Query 005646
Match_columns 686
No_of_seqs 823 out of 4754
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 11:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 7.8E-76 1.7E-80 624.5 45.2 634 6-686 6-712 (712)
2 KOG0271 Notchless-like WD40 re 100.0 1.9E-41 4.1E-46 329.4 25.6 312 242-678 107-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 1.2E-40 2.7E-45 323.8 24.8 269 201-547 113-442 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-39 4.5E-44 319.6 22.1 260 205-542 179-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 8.8E-37 1.9E-41 301.1 20.3 263 248-624 173-458 (459)
6 KOG0279 G protein beta subunit 100.0 4.6E-35 1E-39 274.9 28.9 269 201-544 13-313 (315)
7 KOG0315 G-protein beta subunit 100.0 2.9E-35 6.2E-40 271.7 26.4 262 214-547 11-291 (311)
8 KOG0286 G-protein beta subunit 100.0 8.9E-35 1.9E-39 274.4 28.2 276 244-542 49-343 (343)
9 KOG0319 WD40-repeat-containing 100.0 1.3E-33 2.8E-38 296.0 29.7 427 207-679 68-618 (775)
10 KOG0279 G protein beta subunit 100.0 1.4E-33 3E-38 265.0 26.3 298 243-679 8-312 (315)
11 KOG0263 Transcription initiati 100.0 2.5E-34 5.4E-39 304.8 23.1 245 204-547 381-652 (707)
12 KOG0318 WD40 repeat stress pro 100.0 2.4E-32 5.2E-37 276.2 34.1 423 202-679 60-601 (603)
13 KOG0286 G-protein beta subunit 100.0 1.1E-31 2.3E-36 253.6 30.4 277 201-515 53-343 (343)
14 KOG0293 WD40 repeat-containing 100.0 6.4E-33 1.4E-37 272.5 21.6 236 242-547 216-473 (519)
15 KOG0318 WD40 repeat stress pro 100.0 4.9E-31 1.1E-35 266.7 32.7 311 205-547 194-563 (603)
16 KOG0282 mRNA splicing factor [ 100.0 4.9E-33 1.1E-37 279.1 18.1 236 243-547 207-465 (503)
17 KOG0284 Polyadenylation factor 100.0 5.7E-33 1.2E-37 272.9 16.6 264 205-547 100-383 (464)
18 KOG0291 WD40-repeat-containing 100.0 1.9E-30 4.1E-35 272.3 35.7 380 205-679 100-549 (893)
19 KOG0265 U5 snRNP-specific prot 100.0 9.6E-32 2.1E-36 255.0 22.7 234 244-547 41-299 (338)
20 KOG0291 WD40-repeat-containing 100.0 5.1E-31 1.1E-35 276.5 29.5 260 209-547 315-615 (893)
21 KOG0273 Beta-transducin family 100.0 1.7E-30 3.6E-35 259.8 29.8 271 207-516 241-522 (524)
22 KOG0645 WD40 repeat protein [G 100.0 4.6E-30 9.9E-35 240.3 30.0 262 202-544 13-311 (312)
23 KOG0265 U5 snRNP-specific prot 100.0 6.4E-31 1.4E-35 249.4 23.6 272 201-542 45-336 (338)
24 KOG0295 WD40 repeat-containing 100.0 4.5E-31 9.6E-36 256.3 20.9 284 182-543 87-405 (406)
25 KOG0315 G-protein beta subunit 100.0 1.6E-30 3.5E-35 240.3 22.7 271 263-679 11-287 (311)
26 KOG0281 Beta-TrCP (transducin 100.0 1.8E-31 3.9E-36 256.8 16.5 257 203-547 197-480 (499)
27 KOG0645 WD40 repeat protein [G 100.0 1.4E-29 3.1E-34 237.1 28.1 209 242-544 6-225 (312)
28 KOG0266 WD40 repeat-containing 100.0 1.4E-29 3E-34 276.1 30.2 267 205-544 163-454 (456)
29 KOG0306 WD40-repeat-containing 100.0 3.9E-29 8.4E-34 262.4 31.3 416 202-679 106-663 (888)
30 KOG0285 Pleiotropic regulator 100.0 5.9E-30 1.3E-34 247.5 21.9 230 244-547 145-392 (460)
31 KOG0316 Conserved WD40 repeat- 100.0 2E-29 4.3E-34 231.3 24.2 228 244-547 11-260 (307)
32 PLN00181 protein SPA1-RELATED; 100.0 9.2E-29 2E-33 289.3 36.4 259 222-546 457-740 (793)
33 KOG0285 Pleiotropic regulator 100.0 9.6E-30 2.1E-34 246.1 22.9 264 201-545 149-440 (460)
34 KOG0276 Vesicle coat complex C 100.0 6E-29 1.3E-33 255.9 30.0 261 206-545 18-299 (794)
35 KOG0319 WD40-repeat-containing 100.0 5.9E-29 1.3E-33 261.1 30.0 430 207-679 25-576 (775)
36 KOG0266 WD40 repeat-containing 100.0 6.9E-29 1.5E-33 270.6 30.6 291 249-681 158-455 (456)
37 KOG0296 Angio-associated migra 100.0 5.7E-29 1.2E-33 241.9 25.0 306 244-624 58-396 (399)
38 PLN00181 protein SPA1-RELATED; 100.0 2E-28 4.4E-33 286.4 34.8 270 207-543 489-792 (793)
39 KOG0263 Transcription initiati 100.0 7.9E-30 1.7E-34 270.7 20.6 200 199-468 447-651 (707)
40 KOG0273 Beta-transducin family 100.0 1.9E-28 4.1E-33 245.2 26.7 274 201-547 176-485 (524)
41 KOG0306 WD40-repeat-containing 100.0 7.5E-28 1.6E-32 252.7 32.0 374 205-678 67-620 (888)
42 KOG0295 WD40 repeat-containing 100.0 7.1E-29 1.5E-33 241.0 20.3 234 243-547 101-367 (406)
43 KOG0293 WD40 repeat-containing 100.0 6E-29 1.3E-33 244.6 19.6 273 201-546 222-515 (519)
44 cd00200 WD40 WD40 domain, foun 100.0 3.3E-27 7.2E-32 240.5 33.1 262 202-542 8-289 (289)
45 KOG0292 Vesicle coat complex C 100.0 1.8E-28 3.9E-33 260.9 23.5 264 205-546 13-323 (1202)
46 KOG0296 Angio-associated migra 100.0 3.2E-27 7E-32 229.7 29.4 305 201-544 62-398 (399)
47 KOG0284 Polyadenylation factor 100.0 2.4E-29 5.2E-34 247.4 14.4 233 206-517 143-380 (464)
48 KOG0275 Conserved WD40 repeat- 100.0 2.8E-29 6.1E-34 239.5 14.0 274 200-542 212-507 (508)
49 cd00200 WD40 WD40 domain, foun 100.0 7.8E-27 1.7E-31 237.8 32.3 232 244-547 3-252 (289)
50 KOG0313 Microtubule binding pr 100.0 8.6E-28 1.9E-32 234.7 23.2 270 202-544 104-418 (423)
51 KOG0281 Beta-TrCP (transducin 100.0 1.6E-28 3.4E-33 236.6 14.3 219 249-548 196-432 (499)
52 KOG0640 mRNA cleavage stimulat 100.0 9.9E-28 2.1E-32 228.1 19.4 223 242-547 104-338 (430)
53 KOG0275 Conserved WD40 repeat- 100.0 4.7E-28 1E-32 231.2 14.9 240 248-548 211-471 (508)
54 KOG0277 Peroxisomal targeting 100.0 7.6E-27 1.7E-31 216.7 21.9 269 202-543 9-308 (311)
55 KOG0282 mRNA splicing factor [ 100.0 1.4E-27 3.1E-32 240.0 17.3 255 212-542 226-503 (503)
56 PTZ00421 coronin; Provisional 100.0 7.2E-26 1.6E-30 246.0 31.9 207 207-469 26-248 (493)
57 KOG0276 Vesicle coat complex C 100.0 9.3E-26 2E-30 232.5 29.4 260 244-574 7-289 (794)
58 KOG0643 Translation initiation 99.9 3E-26 6.5E-31 214.2 23.3 295 201-545 8-318 (327)
59 KOG0316 Conserved WD40 repeat- 99.9 2.4E-26 5.2E-31 211.1 22.0 235 202-518 16-258 (307)
60 KOG0288 WD40 repeat protein Ti 99.9 4.8E-27 1E-31 231.7 16.3 266 202-542 174-459 (459)
61 KOG1446 Histone H3 (Lys4) meth 99.9 4.7E-25 1E-29 211.9 29.5 240 243-550 7-268 (311)
62 PTZ00420 coronin; Provisional 99.9 3.3E-25 7.1E-30 241.8 32.3 186 219-467 50-249 (568)
63 KOG0292 Vesicle coat complex C 99.9 1.5E-26 3.4E-31 246.3 21.0 237 247-547 6-283 (1202)
64 KOG0310 Conserved WD40 repeat- 99.9 1.1E-25 2.3E-30 227.0 25.8 267 204-548 27-313 (487)
65 KOG0264 Nucleosome remodeling 99.9 3E-26 6.5E-31 229.5 20.6 263 199-516 120-403 (422)
66 KOG0643 Translation initiation 99.9 1.2E-25 2.6E-30 210.2 22.8 205 245-547 5-223 (327)
67 KOG0278 Serine/threonine kinas 99.9 2.1E-26 4.5E-31 213.1 15.5 241 201-547 57-300 (334)
68 KOG0289 mRNA splicing factor [ 99.9 1.1E-24 2.3E-29 216.3 27.1 261 205-543 221-505 (506)
69 KOG0313 Microtubule binding pr 99.9 2.2E-25 4.8E-30 217.9 22.0 254 215-518 161-419 (423)
70 KOG0973 Histone transcription 99.9 4.5E-25 9.8E-30 242.3 26.8 288 207-547 19-358 (942)
71 KOG0268 Sof1-like rRNA process 99.9 1E-25 2.2E-30 218.9 18.7 265 201-548 64-349 (433)
72 KOG0274 Cdc4 and related F-box 99.9 8.1E-25 1.7E-29 238.0 27.1 261 203-547 208-485 (537)
73 KOG1407 WD40 repeat protein [F 99.9 6.9E-25 1.5E-29 204.6 22.6 234 244-547 14-264 (313)
74 KOG0278 Serine/threonine kinas 99.9 5.8E-26 1.2E-30 210.2 15.3 230 244-547 8-257 (334)
75 KOG0277 Peroxisomal targeting 99.9 8E-26 1.7E-30 210.0 16.3 229 213-516 73-308 (311)
76 KOG0294 WD40 repeat-containing 99.9 1.5E-24 3.2E-29 207.5 25.2 255 216-547 4-284 (362)
77 KOG0640 mRNA cleavage stimulat 99.9 2.6E-25 5.7E-30 211.6 19.2 275 205-544 116-426 (430)
78 KOG0288 WD40 repeat protein Ti 99.9 4.7E-26 1E-30 224.7 14.0 230 245-547 170-420 (459)
79 KOG0299 U3 snoRNP-associated p 99.9 3.5E-25 7.6E-30 221.6 20.1 312 172-547 65-413 (479)
80 KOG0310 Conserved WD40 repeat- 99.9 1.2E-24 2.7E-29 219.3 23.8 229 206-515 73-307 (487)
81 KOG0772 Uncharacterized conser 99.9 9E-25 2E-29 220.8 21.9 260 245-576 162-468 (641)
82 KOG0641 WD40 repeat protein [G 99.9 4.6E-23 1E-27 188.1 30.1 271 205-496 36-329 (350)
83 KOG0772 Uncharacterized conser 99.9 1.3E-24 2.8E-29 219.7 20.2 277 207-542 173-485 (641)
84 KOG0299 U3 snoRNP-associated p 99.9 2.9E-24 6.2E-29 215.1 22.6 267 201-532 140-443 (479)
85 KOG0283 WD40 repeat-containing 99.9 2.7E-24 5.8E-29 230.8 22.8 245 201-517 265-576 (712)
86 KOG0305 Anaphase promoting com 99.9 4.8E-24 1E-28 223.6 23.5 238 204-547 218-464 (484)
87 KOG0647 mRNA export protein (c 99.9 3.3E-23 7.3E-28 197.2 26.5 238 206-515 32-279 (347)
88 KOG1036 Mitotic spindle checkp 99.9 1.7E-23 3.6E-28 200.2 24.3 247 249-576 12-287 (323)
89 KOG0308 Conserved WD40 repeat- 99.9 5.6E-24 1.2E-28 220.8 22.5 239 211-547 35-288 (735)
90 KOG2106 Uncharacterized conser 99.9 2.3E-22 5E-27 203.0 31.5 323 206-574 249-607 (626)
91 KOG0647 mRNA export protein (c 99.9 4.5E-23 9.7E-28 196.3 24.3 228 249-547 26-284 (347)
92 KOG0274 Cdc4 and related F-box 99.9 4E-23 8.6E-28 224.8 27.5 263 249-590 207-490 (537)
93 PTZ00420 coronin; Provisional 99.9 1.8E-22 3.9E-27 220.4 32.0 169 346-546 66-250 (568)
94 PTZ00421 coronin; Provisional 99.9 6.4E-23 1.4E-27 223.0 28.2 226 201-496 73-313 (493)
95 KOG2055 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 203.4 25.1 371 159-679 118-511 (514)
96 KOG1407 WD40 repeat protein [F 99.9 2E-22 4.3E-27 188.2 24.9 251 207-535 26-293 (313)
97 KOG1332 Vesicle coat complex C 99.9 2E-23 4.2E-28 193.1 18.0 240 209-545 19-287 (299)
98 KOG0264 Nucleosome remodeling 99.9 4.2E-23 9.1E-28 207.0 21.3 239 248-545 122-405 (422)
99 KOG0294 WD40 repeat-containing 99.9 1.1E-22 2.4E-27 194.8 22.3 238 201-518 41-282 (362)
100 KOG0301 Phospholipase A2-activ 99.9 8.2E-23 1.8E-27 213.8 22.0 262 200-545 11-289 (745)
101 KOG2096 WD40 repeat protein [G 99.9 4.9E-22 1.1E-26 190.2 24.6 288 243-545 79-403 (420)
102 KOG0305 Anaphase promoting com 99.9 2.7E-22 5.9E-27 210.4 24.9 227 213-547 187-422 (484)
103 KOG0300 WD40 repeat-containing 99.9 1.3E-22 2.9E-27 193.6 19.8 232 244-547 142-431 (481)
104 KOG0639 Transducin-like enhanc 99.9 7.8E-23 1.7E-27 205.9 18.3 258 210-543 428-703 (705)
105 KOG1273 WD40 repeat protein [G 99.9 8.6E-22 1.9E-26 188.3 24.5 225 253-547 26-283 (405)
106 KOG0268 Sof1-like rRNA process 99.9 1.8E-23 3.8E-28 203.4 13.1 270 347-680 59-345 (433)
107 KOG1539 WD repeat protein [Gen 99.9 8.1E-22 1.8E-26 210.1 26.3 379 214-680 173-648 (910)
108 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-20 2.3E-25 195.9 33.4 260 214-547 2-282 (300)
109 KOG1036 Mitotic spindle checkp 99.9 1.9E-21 4E-26 186.2 25.2 252 207-534 19-294 (323)
110 KOG0300 WD40 repeat-containing 99.9 2.8E-22 6E-27 191.4 19.4 293 215-547 162-479 (481)
111 KOG0973 Histone transcription 99.9 8.1E-22 1.8E-26 216.8 24.7 246 201-517 67-355 (942)
112 KOG0269 WD40 repeat-containing 99.9 1.3E-22 2.8E-27 214.6 17.6 279 204-549 40-345 (839)
113 KOG0289 mRNA splicing factor [ 99.9 1.4E-21 3.1E-26 194.2 23.6 223 251-545 220-463 (506)
114 KOG1446 Histone H3 (Lys4) meth 99.9 2.6E-20 5.6E-25 179.4 31.3 264 205-547 18-306 (311)
115 KOG1063 RNA polymerase II elon 99.9 1.7E-21 3.7E-26 203.9 23.9 409 215-683 161-651 (764)
116 KOG2055 WD40 repeat protein [G 99.9 8.9E-22 1.9E-26 197.2 20.9 273 203-544 213-512 (514)
117 KOG0646 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 197.2 21.3 228 223-547 61-310 (476)
118 KOG0269 WD40 repeat-containing 99.9 1.5E-22 3.2E-27 214.1 15.8 233 210-516 97-339 (839)
119 KOG0650 WD40 repeat nucleolar 99.9 1.5E-21 3.2E-26 200.9 22.4 286 244-541 394-732 (733)
120 KOG4283 Transcription-coupled 99.9 1.2E-21 2.5E-26 185.7 19.7 300 247-625 40-364 (397)
121 KOG0308 Conserved WD40 repeat- 99.9 1.8E-21 3.8E-26 202.4 21.8 267 211-547 83-396 (735)
122 KOG1332 Vesicle coat complex C 99.9 5E-22 1.1E-26 183.9 15.7 210 247-545 8-242 (299)
123 KOG1063 RNA polymerase II elon 99.9 9.7E-21 2.1E-25 198.2 27.2 308 214-546 207-650 (764)
124 KOG0270 WD40 repeat-containing 99.9 9.7E-22 2.1E-26 196.3 18.5 241 212-547 191-452 (463)
125 KOG0302 Ribosome Assembly prot 99.9 2.8E-21 6E-26 189.1 20.5 221 246-517 147-378 (440)
126 KOG4283 Transcription-coupled 99.9 4.1E-21 8.9E-26 182.1 20.9 283 198-543 38-364 (397)
127 KOG0646 WD40 repeat protein [G 99.9 2.5E-21 5.4E-26 194.6 20.2 222 206-496 86-329 (476)
128 KOG1539 WD repeat protein [Gen 99.9 2.2E-20 4.7E-25 199.3 28.2 326 204-545 245-649 (910)
129 KOG2445 Nuclear pore complex c 99.9 1.5E-20 3.3E-25 179.6 24.0 214 247-547 10-259 (361)
130 KOG0270 WD40 repeat-containing 99.9 2.6E-21 5.7E-26 193.2 19.7 158 350-515 239-402 (463)
131 KOG2445 Nuclear pore complex c 99.9 1.3E-20 2.9E-25 179.9 23.4 257 206-547 18-321 (361)
132 KOG0301 Phospholipase A2-activ 99.9 5.3E-21 1.2E-25 200.3 20.3 218 212-517 70-288 (745)
133 KOG1408 WD40 repeat protein [F 99.9 7.9E-21 1.7E-25 198.6 21.4 279 214-545 393-714 (1080)
134 KOG1274 WD40 repeat protein [G 99.9 3.3E-20 7.1E-25 200.2 26.8 236 247-546 10-264 (933)
135 KOG0641 WD40 repeat protein [G 99.9 5.1E-20 1.1E-24 168.3 23.9 215 248-546 30-305 (350)
136 KOG2106 Uncharacterized conser 99.9 2.7E-19 5.9E-24 181.0 31.3 282 220-544 177-521 (626)
137 KOG0302 Ribosome Assembly prot 99.9 6E-21 1.3E-25 186.8 18.5 232 215-509 167-431 (440)
138 KOG0321 WD40 repeat-containing 99.9 6.8E-21 1.5E-25 197.7 19.8 239 254-549 53-352 (720)
139 KOG1408 WD40 repeat protein [F 99.9 1.9E-20 4E-25 195.9 21.2 305 209-548 332-675 (1080)
140 KOG0267 Microtubule severing p 99.8 1.5E-21 3.2E-26 205.1 9.4 236 216-536 7-260 (825)
141 KOG0267 Microtubule severing p 99.8 1.5E-21 3.2E-26 205.1 9.2 221 210-509 37-260 (825)
142 KOG4328 WD40 protein [Function 99.8 6.5E-20 1.4E-24 183.8 20.2 273 205-544 190-495 (498)
143 KOG0321 WD40 repeat-containing 99.8 1.4E-19 3E-24 188.0 21.2 265 215-548 66-395 (720)
144 KOG2048 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 175.3 35.4 302 207-542 31-351 (691)
145 KOG1273 WD40 repeat protein [G 99.8 3.4E-19 7.4E-24 170.7 20.4 271 204-547 26-325 (405)
146 KOG2096 WD40 repeat protein [G 99.8 7.7E-19 1.7E-23 168.4 22.4 191 347-547 79-311 (420)
147 KOG2048 WD40 repeat protein [G 99.8 1.7E-17 3.8E-22 173.9 33.7 235 249-547 24-278 (691)
148 KOG1274 WD40 repeat protein [G 99.8 1.2E-18 2.5E-23 188.3 25.4 257 207-541 19-297 (933)
149 KOG0639 Transducin-like enhanc 99.8 6.7E-20 1.4E-24 185.0 14.7 232 207-516 471-703 (705)
150 KOG0303 Actin-binding protein 99.8 8.6E-19 1.9E-23 172.6 19.9 169 245-469 76-252 (472)
151 KOG4378 Nuclear protein COP1 [ 99.8 2.8E-19 6E-24 180.4 16.6 208 214-496 92-303 (673)
152 KOG4328 WD40 protein [Function 99.8 1.6E-18 3.5E-23 173.9 21.0 245 239-547 175-453 (498)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.7E-17 3.7E-22 171.8 29.6 181 356-547 32-240 (300)
154 KOG4378 Nuclear protein COP1 [ 99.8 1.4E-18 3E-23 175.4 20.1 280 216-575 5-305 (673)
155 KOG1188 WD40 repeat protein [G 99.8 2.3E-18 5E-23 167.0 20.7 265 214-546 41-348 (376)
156 KOG1009 Chromatin assembly com 99.8 3.4E-18 7.3E-23 169.4 20.9 287 207-547 19-375 (434)
157 KOG1445 Tumor-specific antigen 99.8 6E-18 1.3E-22 175.1 21.2 134 415-549 601-755 (1012)
158 KOG1034 Transcriptional repres 99.8 9.7E-19 2.1E-23 168.7 12.8 228 214-515 106-381 (385)
159 KOG1034 Transcriptional repres 99.8 1.3E-17 2.7E-22 161.1 18.9 262 215-544 56-383 (385)
160 KOG0307 Vesicle coat complex C 99.8 2.1E-18 4.5E-23 190.9 13.7 235 215-518 82-328 (1049)
161 KOG0650 WD40 repeat nucleolar 99.8 9.7E-17 2.1E-21 165.7 23.9 193 345-547 391-640 (733)
162 KOG4227 WD40 repeat protein [G 99.8 3.3E-17 7.2E-22 160.9 18.9 310 243-630 49-391 (609)
163 KOG1963 WD40 repeat protein [G 99.8 4.7E-16 1E-20 168.2 29.2 318 207-547 22-378 (792)
164 KOG2919 Guanine nucleotide-bin 99.8 1.3E-16 2.9E-21 153.6 21.8 234 253-547 52-330 (406)
165 KOG0303 Actin-binding protein 99.8 6.8E-17 1.5E-21 159.4 20.2 193 345-547 72-297 (472)
166 KOG0642 Cell-cycle nuclear pro 99.7 8E-18 1.7E-22 173.2 12.9 245 245-547 289-564 (577)
167 KOG1188 WD40 repeat protein [G 99.7 1.4E-16 3.1E-21 154.7 20.5 176 367-548 42-246 (376)
168 KOG0307 Vesicle coat complex C 99.7 1.1E-17 2.3E-22 185.4 13.1 263 220-547 36-330 (1049)
169 KOG1538 Uncharacterized conser 99.7 1.4E-16 3E-21 165.9 20.3 256 206-546 17-295 (1081)
170 KOG0642 Cell-cycle nuclear pro 99.7 6.4E-17 1.4E-21 166.6 15.1 249 207-517 300-561 (577)
171 KOG0322 G-protein beta subunit 99.7 5E-16 1.1E-20 145.9 18.6 268 201-496 12-303 (323)
172 KOG1517 Guanine nucleotide bin 99.7 2.2E-15 4.7E-20 164.8 26.4 283 205-547 1068-1384(1387)
173 KOG1445 Tumor-specific antigen 99.7 2.2E-16 4.8E-21 163.6 16.9 218 189-467 569-799 (1012)
174 PRK11028 6-phosphogluconolacto 99.7 1.9E-14 4.1E-19 151.6 31.6 262 217-545 6-305 (330)
175 KOG0649 WD40 repeat protein [G 99.7 8E-15 1.7E-19 136.2 24.8 244 207-518 16-275 (325)
176 KOG1587 Cytoplasmic dynein int 99.7 2.2E-15 4.7E-20 163.2 24.0 253 223-546 222-518 (555)
177 KOG1538 Uncharacterized conser 99.7 9.8E-16 2.1E-20 159.7 19.5 221 252-545 14-253 (1081)
178 KOG0644 Uncharacterized conser 99.7 3.1E-17 6.7E-22 174.9 8.0 234 239-547 179-471 (1113)
179 KOG2919 Guanine nucleotide-bin 99.7 5.9E-15 1.3E-19 142.4 22.3 265 206-535 54-361 (406)
180 KOG1963 WD40 repeat protein [G 99.7 1.5E-14 3.2E-19 156.7 27.4 316 217-627 175-539 (792)
181 KOG1007 WD repeat protein TSSC 99.7 2.8E-15 6.2E-20 142.4 18.7 235 223-515 93-359 (370)
182 KOG0290 Conserved WD40 repeat- 99.7 1.7E-15 3.7E-20 144.1 17.2 226 219-507 117-356 (364)
183 KOG1240 Protein kinase contain 99.7 1.4E-14 3.1E-19 161.0 26.3 275 196-547 1041-1337(1431)
184 KOG0771 Prolactin regulatory e 99.7 8.1E-16 1.8E-20 153.8 15.0 193 254-545 148-355 (398)
185 KOG1007 WD repeat protein TSSC 99.7 5.3E-15 1.2E-19 140.6 19.1 230 221-516 38-288 (370)
186 KOG1310 WD40 repeat protein [G 99.7 6.1E-16 1.3E-20 158.3 13.5 239 240-548 40-307 (758)
187 COG2319 FOG: WD40 repeat [Gene 99.7 1.3E-13 2.8E-18 148.3 32.3 251 219-547 130-403 (466)
188 KOG4227 WD40 repeat protein [G 99.7 7.3E-15 1.6E-19 144.6 19.9 275 206-545 61-388 (609)
189 KOG0290 Conserved WD40 repeat- 99.6 2.1E-14 4.5E-19 136.8 20.8 231 222-518 72-319 (364)
190 COG2319 FOG: WD40 repeat [Gene 99.6 5.5E-13 1.2E-17 143.3 33.9 277 245-547 60-362 (466)
191 KOG0649 WD40 repeat protein [G 99.6 8.8E-14 1.9E-18 129.3 22.6 198 201-467 60-275 (325)
192 KOG1334 WD40 repeat protein [G 99.6 8E-15 1.7E-19 148.6 16.2 289 244-547 136-469 (559)
193 KOG1587 Cytoplasmic dynein int 99.6 6.2E-14 1.3E-18 152.0 22.0 255 201-468 240-518 (555)
194 KOG1009 Chromatin assembly com 99.6 1.3E-14 2.7E-19 144.3 15.1 167 250-470 13-199 (434)
195 KOG1523 Actin-related protein 99.6 9.1E-14 2E-18 134.3 19.9 208 249-517 9-236 (361)
196 PRK01742 tolB translocation pr 99.6 1.5E-13 3.3E-18 149.6 23.5 211 221-544 182-401 (429)
197 KOG1523 Actin-related protein 99.6 1.6E-13 3.5E-18 132.6 20.6 201 205-469 14-239 (361)
198 KOG2110 Uncharacterized conser 99.6 2E-12 4.3E-17 127.5 28.5 154 353-516 86-247 (391)
199 KOG1524 WD40 repeat-containing 99.6 3.6E-14 7.8E-19 145.1 15.3 206 214-515 76-284 (737)
200 KOG2110 Uncharacterized conser 99.6 2E-12 4.3E-17 127.5 26.6 191 208-469 51-251 (391)
201 KOG0322 G-protein beta subunit 99.6 6.5E-14 1.4E-18 131.8 15.1 242 245-624 9-321 (323)
202 KOG2321 WD40 repeat protein [G 99.6 5.3E-13 1.2E-17 137.9 22.7 265 248-545 49-344 (703)
203 KOG1524 WD40 repeat-containing 99.6 1.6E-13 3.6E-18 140.3 18.3 181 346-541 96-283 (737)
204 KOG0771 Prolactin regulatory e 99.5 1.6E-13 3.4E-18 137.6 14.7 202 205-426 148-355 (398)
205 KOG1517 Guanine nucleotide bin 99.5 4.3E-13 9.3E-18 147.2 19.0 238 214-518 1124-1382(1387)
206 PRK11028 6-phosphogluconolacto 99.5 1.1E-11 2.4E-16 130.5 28.7 187 355-546 35-260 (330)
207 KOG1310 WD40 repeat protein [G 99.5 9.2E-14 2E-18 142.5 11.4 177 346-523 42-237 (758)
208 KOG2139 WD40 repeat protein [G 99.5 4.7E-12 1E-16 124.3 21.9 283 251-544 99-431 (445)
209 KOG2394 WD40 protein DMR-N9 [G 99.5 9.6E-13 2.1E-17 135.1 17.1 198 211-446 183-384 (636)
210 PRK03629 tolB translocation pr 99.5 1.2E-11 2.5E-16 134.6 26.7 215 222-546 178-408 (429)
211 PRK05137 tolB translocation pr 99.5 1.2E-11 2.7E-16 135.0 27.0 175 223-469 182-369 (435)
212 PRK04922 tolB translocation pr 99.5 8.3E-12 1.8E-16 136.2 25.0 177 222-470 183-372 (433)
213 KOG2394 WD40 protein DMR-N9 [G 99.5 2.8E-12 6.1E-17 131.7 19.5 185 354-547 219-455 (636)
214 KOG0644 Uncharacterized conser 99.5 5E-14 1.1E-18 150.8 7.0 275 346-678 182-466 (1113)
215 PF08662 eIF2A: Eukaryotic tra 99.5 5.2E-12 1.1E-16 121.3 19.7 112 353-468 58-181 (194)
216 KOG1240 Protein kinase contain 99.5 1E-11 2.3E-16 138.7 24.5 217 244-547 1042-1276(1431)
217 KOG4497 Uncharacterized conser 99.4 3.7E-13 7.9E-18 130.3 10.2 185 354-545 48-241 (447)
218 KOG1272 WD40-repeat-containing 99.4 3.5E-13 7.6E-18 136.0 9.0 228 250-514 129-359 (545)
219 KOG4497 Uncharacterized conser 99.4 8.3E-11 1.8E-15 114.2 22.9 188 206-465 13-239 (447)
220 PRK01742 tolB translocation pr 99.4 1E-11 2.2E-16 135.3 18.1 208 207-496 209-425 (429)
221 KOG3881 Uncharacterized conser 99.4 7E-11 1.5E-15 117.5 21.2 205 246-547 101-323 (412)
222 PF08662 eIF2A: Eukaryotic tra 99.4 5.1E-11 1.1E-15 114.5 19.8 148 358-546 9-181 (194)
223 KOG2111 Uncharacterized conser 99.4 3.7E-10 8E-15 109.7 25.2 178 222-426 74-257 (346)
224 PRK02889 tolB translocation pr 99.4 1.5E-10 3.3E-15 126.0 25.8 176 223-470 176-364 (427)
225 TIGR02800 propeller_TolB tol-p 99.4 1.9E-10 4.2E-15 125.3 25.9 175 223-469 170-357 (417)
226 KOG3881 Uncharacterized conser 99.3 5.2E-11 1.1E-15 118.4 18.6 224 206-496 108-341 (412)
227 KOG2111 Uncharacterized conser 99.3 3.3E-10 7.2E-15 110.0 22.8 157 353-547 93-259 (346)
228 PRK03629 tolB translocation pr 99.3 2.1E-10 4.6E-15 124.7 22.7 208 207-496 204-427 (429)
229 KOG1334 WD40 repeat protein [G 99.3 2.2E-11 4.7E-16 124.0 13.4 291 346-679 134-465 (559)
230 KOG2315 Predicted translation 99.3 1.3E-09 2.8E-14 113.4 26.0 296 207-547 40-393 (566)
231 KOG1354 Serine/threonine prote 99.3 8.2E-11 1.8E-15 115.0 16.3 290 206-547 30-362 (433)
232 PF02239 Cytochrom_D1: Cytochr 99.3 1.7E-09 3.6E-14 114.4 27.6 255 217-547 10-305 (369)
233 KOG1272 WD40-repeat-containing 99.3 1.2E-11 2.5E-16 125.2 9.8 286 205-544 133-421 (545)
234 PRK04922 tolB translocation pr 99.2 5.3E-10 1.1E-14 122.1 21.6 188 208-468 210-413 (433)
235 KOG0974 WD-repeat protein WDR6 99.2 2.1E-10 4.5E-15 127.0 17.6 146 210-426 142-289 (967)
236 KOG2321 WD40 repeat protein [G 99.2 2.5E-09 5.3E-14 111.2 23.8 268 206-517 56-343 (703)
237 PF10282 Lactonase: Lactonase, 99.2 3.8E-08 8.3E-13 104.1 33.8 258 223-545 13-323 (345)
238 PRK00178 tolB translocation pr 99.2 2.9E-09 6.2E-14 116.5 25.9 175 224-470 180-367 (430)
239 KOG0280 Uncharacterized conser 99.2 1.3E-09 2.9E-14 104.7 19.7 235 221-471 44-289 (339)
240 KOG2139 WD40 repeat protein [G 99.2 3.4E-09 7.3E-14 104.5 23.0 245 205-517 144-431 (445)
241 PRK02889 tolB translocation pr 99.2 1E-09 2.3E-14 119.4 22.0 189 207-466 201-403 (427)
242 PRK05137 tolB translocation pr 99.2 1.2E-09 2.5E-14 119.6 21.9 191 207-470 207-416 (435)
243 PF02239 Cytochrom_D1: Cytochr 99.2 2.8E-09 6.1E-14 112.7 23.7 263 207-496 42-325 (369)
244 KOG1409 Uncharacterized conser 99.2 8.4E-10 1.8E-14 108.1 17.7 248 244-517 18-270 (404)
245 KOG0974 WD-repeat protein WDR6 99.2 2.7E-10 5.9E-15 126.1 15.7 189 208-468 94-290 (967)
246 PRK04792 tolB translocation pr 99.2 5.2E-09 1.1E-13 114.4 25.5 175 224-470 199-386 (448)
247 COG5354 Uncharacterized protei 99.1 2E-08 4.4E-13 103.4 25.5 298 207-547 38-398 (561)
248 KOG4547 WD40 repeat-containing 99.1 3.3E-09 7.2E-14 111.2 20.2 201 260-515 3-218 (541)
249 KOG1354 Serine/threonine prote 99.1 1.4E-09 3.1E-14 106.5 15.3 222 250-547 25-304 (433)
250 KOG4190 Uncharacterized conser 99.1 5.1E-10 1.1E-14 115.3 12.1 232 212-515 746-986 (1034)
251 KOG1409 Uncharacterized conser 99.1 3.2E-09 6.9E-14 104.2 16.0 194 205-428 72-273 (404)
252 KOG2041 WD40 repeat protein [G 99.1 2.8E-09 6.2E-14 113.0 15.2 240 249-536 13-280 (1189)
253 TIGR02800 propeller_TolB tol-p 99.0 3.1E-08 6.7E-13 108.0 22.6 160 350-547 185-357 (417)
254 PRK01029 tolB translocation pr 99.0 9E-08 2E-12 103.9 25.8 154 356-547 232-406 (428)
255 COG2706 3-carboxymuconate cycl 99.0 7.7E-07 1.7E-11 88.8 29.2 260 222-547 15-324 (346)
256 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.3E-06 2.9E-11 90.5 32.3 256 223-547 27-333 (352)
257 KOG2041 WD40 repeat protein [G 99.0 8.3E-08 1.8E-12 102.2 23.1 313 205-547 18-372 (1189)
258 PRK00178 tolB translocation pr 99.0 4.4E-08 9.6E-13 107.2 22.4 188 208-468 205-408 (430)
259 PF04762 IKI3: IKI3 family; I 99.0 4.7E-07 1E-11 106.2 31.9 313 204-547 76-459 (928)
260 KOG1064 RAVE (regulator of V-A 99.0 1.1E-09 2.4E-14 126.7 9.6 181 211-471 2218-2403(2439)
261 KOG2314 Translation initiation 99.0 1.6E-07 3.5E-12 97.7 24.4 306 206-547 215-576 (698)
262 PRK04792 tolB translocation pr 99.0 5.6E-08 1.2E-12 106.3 22.0 188 207-467 223-426 (448)
263 PRK01029 tolB translocation pr 99.0 9.4E-08 2E-12 103.7 23.2 114 356-470 282-407 (428)
264 PLN02919 haloacid dehalogenase 98.9 5.3E-07 1.2E-11 107.7 30.3 164 358-547 686-891 (1057)
265 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.4E-06 3E-11 90.3 27.4 243 209-472 53-336 (352)
266 KOG1064 RAVE (regulator of V-A 98.9 1.2E-08 2.6E-13 118.4 13.2 185 351-547 2205-2401(2439)
267 KOG4190 Uncharacterized conser 98.9 6.3E-09 1.4E-13 107.3 9.6 232 244-542 729-986 (1034)
268 KOG4547 WD40 repeat-containing 98.9 1.6E-07 3.5E-12 98.8 19.6 114 351-467 99-221 (541)
269 KOG2315 Predicted translation 98.8 7.8E-07 1.7E-11 93.1 23.2 148 356-517 219-390 (566)
270 PF10282 Lactonase: Lactonase, 98.8 4.5E-06 9.8E-11 88.3 29.6 250 207-516 42-321 (345)
271 COG5170 CDC55 Serine/threonine 98.8 4E-08 8.8E-13 95.1 12.4 214 250-551 26-316 (460)
272 KOG4532 WD40-like repeat conta 98.8 6.1E-07 1.3E-11 85.6 20.0 222 219-517 48-282 (344)
273 KOG0280 Uncharacterized conser 98.8 3.6E-08 7.7E-13 95.0 11.6 184 207-455 127-320 (339)
274 KOG0309 Conserved WD40 repeat- 98.8 8.9E-09 1.9E-13 109.9 7.7 249 214-546 82-341 (1081)
275 TIGR03300 assembly_YfgL outer 98.8 2.2E-06 4.7E-11 92.1 25.5 180 365-547 105-300 (377)
276 KOG0309 Conserved WD40 repeat- 98.8 3E-08 6.5E-13 105.9 9.9 155 356-517 69-232 (1081)
277 KOG4714 Nucleoporin [Nuclear s 98.7 1.3E-07 2.9E-12 89.6 12.5 160 347-517 82-254 (319)
278 TIGR03300 assembly_YfgL outer 98.7 4.8E-06 1.1E-10 89.4 26.6 249 211-547 63-341 (377)
279 PRK04043 tolB translocation pr 98.7 8.6E-06 1.9E-10 88.0 27.3 113 355-470 233-361 (419)
280 KOG3914 WD repeat protein WDR4 98.7 8E-08 1.7E-12 96.6 10.1 86 348-435 145-233 (390)
281 COG4946 Uncharacterized protei 98.7 1.6E-05 3.6E-10 81.6 26.4 144 248-455 357-507 (668)
282 KOG1912 WD40 repeat protein [G 98.7 1.2E-05 2.6E-10 87.1 26.4 177 409-591 439-708 (1062)
283 COG5170 CDC55 Serine/threonine 98.7 3.2E-07 7E-12 88.9 13.1 237 208-470 33-313 (460)
284 KOG3914 WD repeat protein WDR4 98.6 3.2E-07 6.9E-12 92.4 12.4 100 370-471 127-228 (390)
285 PF04762 IKI3: IKI3 family; I 98.6 8.1E-05 1.8E-09 87.7 34.3 330 200-547 119-567 (928)
286 COG5354 Uncharacterized protei 98.6 8.3E-06 1.8E-10 84.6 22.2 241 206-469 136-398 (561)
287 KOG4714 Nucleoporin [Nuclear s 98.6 5.6E-07 1.2E-11 85.5 11.6 94 375-468 159-256 (319)
288 PLN02919 haloacid dehalogenase 98.6 1.3E-05 2.8E-10 96.1 26.2 114 356-470 741-892 (1057)
289 COG2706 3-carboxymuconate cycl 98.6 6.8E-05 1.5E-09 75.2 26.4 249 207-516 45-320 (346)
290 KOG1912 WD40 repeat protein [G 98.6 3.4E-06 7.4E-11 91.2 18.2 233 207-516 19-303 (1062)
291 PF13360 PQQ_2: PQQ-like domai 98.5 3.4E-05 7.3E-10 76.9 24.1 179 364-547 35-233 (238)
292 KOG0882 Cyclophilin-related pe 98.5 1E-06 2.2E-11 89.7 12.7 243 209-471 16-310 (558)
293 KOG4532 WD40-like repeat conta 98.5 1.7E-05 3.7E-10 75.9 18.8 190 212-472 83-288 (344)
294 PF00400 WD40: WD domain, G-be 98.5 3.7E-07 8E-12 62.6 5.6 35 244-278 5-39 (39)
295 KOG2695 WD40 repeat protein [G 98.5 7.3E-07 1.6E-11 87.9 9.5 158 213-439 225-390 (425)
296 PF08450 SGL: SMP-30/Gluconola 98.5 0.00023 4.9E-09 71.5 28.0 156 357-517 42-213 (246)
297 PRK04043 tolB translocation pr 98.5 4.3E-05 9.4E-10 82.5 24.0 178 356-546 189-402 (419)
298 COG4946 Uncharacterized protei 98.4 4.1E-05 8.9E-10 78.7 21.5 137 207-414 365-507 (668)
299 PF15492 Nbas_N: Neuroblastoma 98.4 0.00017 3.6E-09 70.4 24.1 70 211-283 7-76 (282)
300 KOG2695 WD40 repeat protein [G 98.4 1.2E-06 2.6E-11 86.4 8.6 140 353-496 251-402 (425)
301 PF07433 DUF1513: Protein of u 98.3 0.00027 5.8E-09 71.1 23.8 226 208-496 11-267 (305)
302 KOG2314 Translation initiation 98.3 2.8E-05 6.1E-10 81.4 17.0 134 358-504 214-363 (698)
303 PF08450 SGL: SMP-30/Gluconola 98.3 0.00071 1.5E-08 67.9 27.3 142 354-506 85-244 (246)
304 PF00400 WD40: WD domain, G-be 98.3 2.1E-06 4.5E-11 58.8 5.7 37 345-381 2-39 (39)
305 KOG1275 PAB-dependent poly(A) 98.3 1.6E-05 3.4E-10 87.9 14.6 182 211-464 145-340 (1118)
306 PF11768 DUF3312: Protein of u 98.3 0.00022 4.8E-09 76.2 22.8 112 356-469 207-332 (545)
307 PRK11138 outer membrane biogen 98.2 0.00025 5.4E-09 76.6 23.8 170 365-547 160-356 (394)
308 KOG1920 IkappaB kinase complex 98.2 0.00051 1.1E-08 78.8 25.1 307 203-547 68-395 (1265)
309 PRK11138 outer membrane biogen 98.2 0.00085 1.8E-08 72.5 26.2 252 212-543 119-393 (394)
310 KOG1832 HIV-1 Vpr-binding prot 98.1 1.6E-06 3.4E-11 94.8 4.3 201 237-471 1088-1296(1516)
311 KOG0882 Cyclophilin-related pe 98.1 1.9E-05 4.1E-10 80.7 11.5 188 352-547 7-234 (558)
312 PRK02888 nitrous-oxide reducta 98.1 0.00014 3.1E-09 79.5 18.9 154 362-518 200-405 (635)
313 KOG2066 Vacuolar assembly/sort 98.1 4.7E-05 1E-09 83.3 14.8 106 363-472 80-193 (846)
314 KOG2066 Vacuolar assembly/sort 98.1 8.1E-05 1.8E-09 81.5 16.0 175 207-466 43-233 (846)
315 PF13360 PQQ_2: PQQ-like domai 98.1 0.0013 2.8E-08 65.4 24.1 184 260-520 34-233 (238)
316 KOG1275 PAB-dependent poly(A) 98.1 6.4E-05 1.4E-09 83.2 14.6 141 367-542 189-340 (1118)
317 KOG1645 RING-finger-containing 98.0 0.00025 5.4E-09 71.9 15.9 82 346-427 185-268 (463)
318 PF07433 DUF1513: Protein of u 98.0 0.0032 7E-08 63.4 23.4 143 254-457 8-183 (305)
319 KOG2114 Vacuolar assembly/sort 98.0 0.0028 6E-08 70.4 24.4 187 348-544 58-273 (933)
320 PF04053 Coatomer_WDAD: Coatom 97.9 0.0009 1.9E-08 72.3 19.5 171 355-545 69-263 (443)
321 PF08596 Lgl_C: Lethal giant l 97.9 0.011 2.4E-07 63.0 27.3 239 252-519 3-292 (395)
322 KOG1008 Uncharacterized conser 97.9 8.7E-06 1.9E-10 86.7 3.6 239 214-516 71-334 (783)
323 KOG1645 RING-finger-containing 97.9 0.00048 1E-08 69.9 15.2 46 243-288 186-232 (463)
324 KOG1920 IkappaB kinase complex 97.8 0.0039 8.4E-08 71.8 22.5 199 249-518 67-323 (1265)
325 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0047 1E-07 59.4 19.5 105 367-473 25-130 (354)
326 KOG1832 HIV-1 Vpr-binding prot 97.8 2E-05 4.2E-10 86.6 3.9 124 345-472 1092-1220(1516)
327 PF15492 Nbas_N: Neuroblastoma 97.8 0.0043 9.4E-08 60.8 19.5 147 359-507 2-167 (282)
328 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.017 3.7E-07 55.7 22.0 69 212-288 62-131 (354)
329 KOG3617 WD40 and TPR repeat-co 97.7 0.00063 1.4E-08 74.8 13.7 68 357-425 62-131 (1416)
330 PF06977 SdiA-regulated: SdiA- 97.6 0.0074 1.6E-07 59.9 19.7 166 348-515 15-199 (248)
331 KOG2114 Vacuolar assembly/sort 97.6 0.0094 2E-07 66.4 22.0 208 205-471 27-248 (933)
332 PF11768 DUF3312: Protein of u 97.6 0.0024 5.2E-08 68.6 16.7 117 392-546 203-331 (545)
333 KOG1008 Uncharacterized conser 97.5 3.3E-05 7.1E-10 82.4 1.4 161 351-516 99-274 (783)
334 KOG3621 WD40 repeat-containing 97.5 0.0082 1.8E-07 65.5 18.8 137 205-403 37-179 (726)
335 PF04841 Vps16_N: Vps16, N-ter 97.5 0.085 1.8E-06 57.0 26.7 125 406-544 189-314 (410)
336 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.006 1.3E-07 51.6 13.7 70 397-469 2-74 (111)
337 KOG3617 WD40 and TPR repeat-co 97.4 0.00025 5.4E-09 77.8 6.7 184 358-545 19-221 (1416)
338 PF00780 CNH: CNH domain; Int 97.4 0.045 9.8E-07 55.8 23.3 111 356-470 37-169 (275)
339 PF06977 SdiA-regulated: SdiA- 97.4 0.062 1.3E-06 53.4 22.8 204 245-463 16-247 (248)
340 PF08596 Lgl_C: Lethal giant l 97.4 0.031 6.6E-07 59.7 21.9 188 356-547 3-293 (395)
341 PF06433 Me-amine-dh_H: Methyl 97.4 0.17 3.6E-06 52.0 25.6 258 223-547 17-323 (342)
342 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.02 4.3E-07 48.5 15.0 99 357-461 2-109 (111)
343 PF03178 CPSF_A: CPSF A subuni 97.3 0.12 2.6E-06 54.1 24.7 110 353-467 87-203 (321)
344 cd00216 PQQ_DH Dehydrogenases 97.2 0.17 3.6E-06 56.3 26.7 172 373-547 173-427 (488)
345 KOG3621 WD40 repeat-containing 97.1 0.0024 5.3E-08 69.5 10.2 147 393-545 32-180 (726)
346 smart00320 WD40 WD40 repeats. 97.1 0.00083 1.8E-08 44.3 4.2 35 244-278 6-40 (40)
347 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.58 1.3E-05 49.6 27.7 265 220-504 20-344 (353)
348 PF06433 Me-amine-dh_H: Methyl 97.0 0.32 6.9E-06 50.0 23.6 143 367-519 149-322 (342)
349 KOG4640 Anaphase-promoting com 97.0 0.0027 5.9E-08 68.3 9.2 96 393-496 19-115 (665)
350 PRK02888 nitrous-oxide reducta 97.0 0.095 2.1E-06 58.0 21.2 102 363-467 285-405 (635)
351 PF03178 CPSF_A: CPSF A subuni 97.0 0.13 2.8E-06 53.8 21.8 130 375-545 62-203 (321)
352 KOG4640 Anaphase-promoting com 97.0 0.0029 6.4E-08 68.0 9.1 91 354-446 20-115 (665)
353 PF00780 CNH: CNH domain; Int 96.9 0.5 1.1E-05 48.0 25.2 161 211-433 5-173 (275)
354 smart00320 WD40 WD40 repeats. 96.9 0.0028 6E-08 41.6 5.4 37 386-423 3-40 (40)
355 PF08553 VID27: VID27 cytoplas 96.8 0.021 4.6E-07 65.2 14.7 96 367-465 544-646 (794)
356 COG0823 TolB Periplasmic compo 96.8 0.08 1.7E-06 57.2 18.4 110 358-469 241-361 (425)
357 PF04841 Vps16_N: Vps16, N-ter 96.7 0.26 5.6E-06 53.3 21.6 164 376-546 62-248 (410)
358 PF05096 Glu_cyclase_2: Glutam 96.7 0.65 1.4E-05 46.1 22.2 182 252-498 46-242 (264)
359 COG0823 TolB Periplasmic compo 96.7 0.12 2.7E-06 55.7 18.8 121 348-469 186-317 (425)
360 PF05694 SBP56: 56kDa selenium 96.6 0.57 1.2E-05 49.5 22.2 155 363-518 138-343 (461)
361 PF08553 VID27: VID27 cytoplas 96.6 0.044 9.6E-07 62.7 15.2 129 368-506 497-637 (794)
362 COG3391 Uncharacterized conser 96.5 0.62 1.3E-05 49.9 22.8 184 358-547 77-286 (381)
363 PF04053 Coatomer_WDAD: Coatom 96.5 0.19 4.1E-06 54.5 18.5 133 366-517 117-262 (443)
364 cd00216 PQQ_DH Dehydrogenases 96.4 0.78 1.7E-05 51.0 23.8 107 366-475 111-273 (488)
365 KOG4441 Proteins containing BT 96.4 0.27 5.8E-06 55.5 19.8 181 358-547 326-549 (571)
366 COG3391 Uncharacterized conser 96.3 1.1 2.5E-05 47.9 23.4 154 356-518 117-284 (381)
367 PF14583 Pectate_lyase22: Olig 96.3 1.9 4E-05 45.3 27.0 96 376-471 169-277 (386)
368 COG3204 Uncharacterized protei 96.2 0.48 1E-05 47.2 17.7 166 351-517 82-263 (316)
369 PRK13616 lipoprotein LpqB; Pro 95.9 0.58 1.3E-05 52.9 19.4 104 357-465 399-524 (591)
370 COG3204 Uncharacterized protei 95.9 2 4.4E-05 42.9 20.3 165 243-469 78-266 (316)
371 PRK13616 lipoprotein LpqB; Pro 95.8 0.18 4E-06 56.8 15.0 106 353-462 348-472 (591)
372 COG3386 Gluconolactonase [Carb 95.7 1.6 3.5E-05 44.9 20.2 101 363-467 75-194 (307)
373 PHA02713 hypothetical protein; 95.7 0.21 4.5E-06 56.4 14.8 170 367-547 306-536 (557)
374 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.7 4.8 0.0001 45.1 27.7 54 418-471 272-338 (527)
375 COG3490 Uncharacterized protei 95.7 0.31 6.7E-06 48.1 13.6 208 208-465 120-347 (366)
376 KOG1897 Damage-specific DNA bi 95.6 6 0.00013 45.9 28.1 317 210-546 266-615 (1096)
377 COG3386 Gluconolactonase [Carb 95.6 2.1 4.5E-05 44.1 20.4 141 357-507 113-275 (307)
378 PF05694 SBP56: 56kDa selenium 95.6 2.3 4.9E-05 45.2 20.5 105 373-477 220-354 (461)
379 COG3490 Uncharacterized protei 95.5 0.75 1.6E-05 45.5 15.7 190 216-473 83-317 (366)
380 PF12894 Apc4_WD40: Anaphase-p 95.3 0.05 1.1E-06 38.6 5.2 33 250-283 11-43 (47)
381 KOG2395 Protein involved in va 95.3 0.74 1.6E-05 49.3 15.8 95 369-466 398-500 (644)
382 KOG2444 WD40 repeat protein [G 95.2 0.027 5.9E-07 53.6 4.6 101 367-469 32-135 (238)
383 PF02897 Peptidase_S9_N: Proly 95.2 5.9 0.00013 42.9 27.7 200 252-466 125-357 (414)
384 KOG2395 Protein involved in va 95.1 0.35 7.5E-06 51.7 12.7 130 367-507 348-491 (644)
385 PF10647 Gmad1: Lipoprotein Lp 95.0 1.2 2.6E-05 44.6 16.5 148 356-505 25-183 (253)
386 KOG2079 Vacuolar assembly/sort 94.9 0.23 5E-06 57.2 11.6 97 367-466 101-203 (1206)
387 KOG4441 Proteins containing BT 94.8 0.64 1.4E-05 52.5 15.2 170 367-547 287-502 (571)
388 PF14583 Pectate_lyase22: Olig 94.8 6.4 0.00014 41.4 25.5 234 207-453 41-299 (386)
389 PF15390 DUF4613: Domain of un 94.7 0.74 1.6E-05 50.1 14.2 112 353-465 55-185 (671)
390 PF10168 Nup88: Nuclear pore c 94.7 4.7 0.0001 46.6 21.8 34 352-385 144-181 (717)
391 PF12894 Apc4_WD40: Anaphase-p 94.5 0.13 2.7E-06 36.5 5.6 33 434-466 9-41 (47)
392 PF05096 Glu_cyclase_2: Glutam 94.5 5.8 0.00013 39.5 22.4 134 355-495 45-183 (264)
393 TIGR03074 PQQ_membr_DH membran 94.3 5.4 0.00012 46.6 21.3 111 365-475 194-353 (764)
394 KOG2444 WD40 repeat protein [G 94.2 0.13 2.8E-06 49.1 6.7 101 367-467 72-178 (238)
395 KOG4499 Ca2+-binding protein R 94.2 4.4 9.4E-05 39.1 16.6 142 356-506 110-273 (310)
396 KOG3630 Nuclear pore complex, 94.0 0.26 5.7E-06 57.0 9.6 136 356-496 102-253 (1405)
397 PF14727 PHTB1_N: PTHB1 N-term 93.9 11 0.00024 40.6 28.3 57 367-424 147-203 (418)
398 KOG2079 Vacuolar assembly/sort 93.8 0.33 7.1E-06 56.1 9.9 102 406-515 98-201 (1206)
399 PF00930 DPPIV_N: Dipeptidyl p 93.7 5 0.00011 42.5 18.5 96 359-455 239-346 (353)
400 PF14781 BBS2_N: Ciliary BBSom 93.5 2.9 6.2E-05 36.8 13.1 107 361-469 5-128 (136)
401 KOG1897 Damage-specific DNA bi 93.5 19 0.00041 42.0 31.7 184 356-545 489-702 (1096)
402 PF14655 RAB3GAP2_N: Rab3 GTPa 93.5 6.9 0.00015 42.0 18.8 94 207-301 7-117 (415)
403 PHA02713 hypothetical protein; 93.4 4.8 0.0001 45.5 18.6 140 367-517 354-533 (557)
404 KOG1916 Nuclear protein, conta 93.3 0.013 2.8E-07 65.6 -2.0 61 222-282 152-215 (1283)
405 KOG3630 Nuclear pore complex, 93.1 0.87 1.9E-05 53.0 11.8 138 437-580 101-258 (1405)
406 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.7 9.9 0.00021 42.6 19.6 106 365-474 69-197 (527)
407 PF14870 PSII_BNR: Photosynthe 92.7 11 0.00023 38.8 18.1 167 226-463 125-301 (302)
408 PF14727 PHTB1_N: PTHB1 N-term 92.6 4.9 0.00011 43.2 16.1 136 406-545 36-205 (418)
409 PF14761 HPS3_N: Hermansky-Pud 92.2 7.4 0.00016 37.4 15.0 60 205-270 19-79 (215)
410 PHA03098 kelch-like protein; P 92.2 5.3 0.00011 45.0 17.0 104 367-472 345-470 (534)
411 TIGR02604 Piru_Ver_Nterm putat 92.0 4 8.6E-05 43.5 14.9 98 356-455 73-202 (367)
412 KOG2377 Uncharacterized conser 91.6 8.6 0.00019 40.8 15.7 153 214-430 34-190 (657)
413 KOG1916 Nuclear protein, conta 91.5 0.14 2.9E-06 57.8 3.0 121 416-544 110-265 (1283)
414 TIGR03074 PQQ_membr_DH membran 91.1 37 0.00079 39.9 23.2 66 366-431 261-350 (764)
415 PHA02790 Kelch-like protein; P 91.0 8 0.00017 42.9 16.5 104 367-472 274-390 (480)
416 PF02897 Peptidase_S9_N: Proly 90.8 27 0.00059 37.7 27.9 247 207-472 129-410 (414)
417 KOG4499 Ca2+-binding protein R 90.7 14 0.0003 35.9 14.9 89 357-446 160-263 (310)
418 PF08728 CRT10: CRT10; InterP 90.6 12 0.00025 42.8 17.0 109 356-465 102-245 (717)
419 PF10313 DUF2415: Uncharacteri 90.4 0.9 1.9E-05 31.3 5.1 32 251-282 1-35 (43)
420 PF14781 BBS2_N: Ciliary BBSom 90.2 9.8 0.00021 33.6 12.5 86 399-495 3-101 (136)
421 COG3823 Glutamine cyclotransfe 90.0 11 0.00024 35.8 13.5 61 355-428 101-161 (262)
422 PF10168 Nup88: Nuclear pore c 89.5 6.1 0.00013 45.7 14.1 28 437-465 85-112 (717)
423 PF12234 Rav1p_C: RAVE protein 89.4 9.6 0.00021 43.0 15.1 108 356-465 31-155 (631)
424 PF07569 Hira: TUP1-like enhan 89.3 2.6 5.6E-05 41.2 9.5 73 394-470 12-99 (219)
425 PHA03098 kelch-like protein; P 89.2 13 0.00027 42.0 16.5 93 375-471 406-516 (534)
426 PF10313 DUF2415: Uncharacteri 89.0 1.2 2.6E-05 30.7 4.8 32 395-426 1-34 (43)
427 PF12234 Rav1p_C: RAVE protein 88.9 15 0.00033 41.6 16.1 68 397-465 32-103 (631)
428 KOG1983 Tomosyn and related SN 87.9 20 0.00044 43.3 17.5 74 351-429 195-268 (993)
429 PRK13684 Ycf48-like protein; P 87.9 28 0.0006 36.5 16.9 107 354-464 214-329 (334)
430 PLN00033 photosystem II stabil 86.9 46 0.00099 35.8 17.8 105 354-463 280-396 (398)
431 PHA02790 Kelch-like protein; P 86.8 42 0.00092 37.2 18.4 103 365-472 318-429 (480)
432 KOG2280 Vacuolar assembly/sort 86.8 36 0.00077 38.7 17.0 37 434-470 214-250 (829)
433 TIGR02604 Piru_Ver_Nterm putat 85.9 24 0.00052 37.6 15.3 108 395-506 14-142 (367)
434 PF10647 Gmad1: Lipoprotein Lp 84.9 23 0.00049 35.5 13.8 99 396-503 25-127 (253)
435 PLN00033 photosystem II stabil 84.9 42 0.00091 36.1 16.4 105 357-465 241-355 (398)
436 COG5167 VID27 Protein involved 84.7 15 0.00032 39.6 12.3 130 367-507 482-623 (776)
437 KOG2280 Vacuolar assembly/sort 84.1 46 0.001 37.9 16.2 222 205-455 85-314 (829)
438 PRK13684 Ycf48-like protein; P 83.7 61 0.0013 34.0 17.6 105 354-462 172-284 (334)
439 PF14761 HPS3_N: Hermansky-Pud 83.3 45 0.00097 32.2 17.3 110 358-469 21-166 (215)
440 PRK10115 protease 2; Provision 83.3 98 0.0021 36.1 23.8 67 358-424 175-254 (686)
441 PF11635 Med16: Mediator compl 83.2 1E+02 0.0023 36.3 21.7 68 393-461 258-345 (753)
442 KOG2247 WD40 repeat-containing 83.2 0.18 4E-06 53.2 -2.1 96 354-452 74-175 (615)
443 PF07569 Hira: TUP1-like enhan 82.8 4.5 9.7E-05 39.5 7.4 76 205-281 14-96 (219)
444 PF15390 DUF4613: Domain of un 82.8 55 0.0012 36.3 15.8 89 359-448 117-214 (671)
445 KOG1900 Nuclear pore complex, 81.5 20 0.00043 43.2 13.0 164 249-426 77-273 (1311)
446 PF07995 GSDH: Glucose / Sorbo 81.1 75 0.0016 33.2 23.2 52 207-261 7-59 (331)
447 KOG4460 Nuclear pore complex, 80.5 94 0.002 34.0 17.9 37 355-391 166-206 (741)
448 PF03022 MRJP: Major royal jel 79.9 75 0.0016 32.5 15.8 57 376-432 35-103 (287)
449 PF12768 Rax2: Cortical protei 79.7 39 0.00085 34.3 13.1 89 375-464 16-121 (281)
450 KOG1896 mRNA cleavage and poly 79.4 1.5E+02 0.0034 35.8 19.4 155 367-532 1048-1228(1366)
451 TIGR03118 PEPCTERM_chp_1 conse 78.4 83 0.0018 32.1 20.5 152 367-547 102-282 (336)
452 PF12657 TFIIIC_delta: Transcr 78.1 14 0.00031 34.5 9.0 30 355-384 86-122 (173)
453 PF07995 GSDH: Glucose / Sorbo 77.5 28 0.00061 36.4 11.9 110 396-509 3-135 (331)
454 KOG4460 Nuclear pore complex, 77.1 31 0.00068 37.4 11.6 81 438-518 105-199 (741)
455 TIGR03548 mutarot_permut cycli 76.8 70 0.0015 33.2 14.7 104 366-471 74-199 (323)
456 TIGR03606 non_repeat_PQQ dehyd 76.6 63 0.0014 35.3 14.3 54 394-448 29-90 (454)
457 PF11715 Nup160: Nucleoporin N 76.6 9.3 0.0002 43.2 8.6 80 212-291 157-259 (547)
458 COG3823 Glutamine cyclotransfe 76.4 74 0.0016 30.5 13.7 117 359-478 50-170 (262)
459 KOG2247 WD40 repeat-containing 75.8 0.39 8.4E-06 50.9 -2.6 146 353-511 33-182 (615)
460 PF11715 Nup160: Nucleoporin N 75.6 24 0.00051 39.9 11.5 68 367-434 160-257 (547)
461 PF12657 TFIIIC_delta: Transcr 75.3 24 0.00053 32.9 9.7 32 437-468 86-123 (173)
462 COG4257 Vgb Streptogramin lyas 74.7 98 0.0021 31.1 16.3 169 356-545 63-263 (353)
463 PF08728 CRT10: CRT10; InterP 74.4 32 0.00069 39.5 11.7 106 406-516 113-245 (717)
464 COG4590 ABC-type uncharacteriz 71.5 17 0.00037 38.5 8.0 102 367-470 282-390 (733)
465 KOG1900 Nuclear pore complex, 71.4 27 0.00059 42.1 10.5 90 372-465 96-204 (1311)
466 KOG3616 Selective LIM binding 70.8 7.5 0.00016 43.5 5.5 79 384-465 4-82 (1636)
467 TIGR03606 non_repeat_PQQ dehyd 70.7 1.7E+02 0.0037 32.1 18.8 34 249-282 28-61 (454)
468 KOG2377 Uncharacterized conser 69.3 92 0.002 33.4 12.6 113 352-467 64-186 (657)
469 COG5167 VID27 Protein involved 68.7 69 0.0015 34.8 11.7 93 373-466 535-632 (776)
470 PF02333 Phytase: Phytase; In 68.6 1.7E+02 0.0036 31.2 20.8 91 375-466 127-237 (381)
471 PF14655 RAB3GAP2_N: Rab3 GTPa 68.5 49 0.0011 35.7 11.0 86 347-432 300-405 (415)
472 PLN02153 epithiospecifier prot 68.3 1.6E+02 0.0034 30.8 20.2 93 376-471 51-172 (341)
473 PLN02193 nitrile-specifier pro 66.5 2.1E+02 0.0046 31.6 17.2 102 367-472 231-357 (470)
474 PRK14131 N-acetylneuraminic ac 66.2 1.9E+02 0.004 30.8 15.3 90 367-457 42-149 (376)
475 KOG1983 Tomosyn and related SN 65.5 1.5E+02 0.0032 36.2 15.4 25 523-547 243-267 (993)
476 PF15477 SMAP: Small acidic pr 64.8 4.2 9E-05 31.5 1.6 16 51-66 10-25 (69)
477 PF07676 PD40: WD40-like Beta 64.8 25 0.00053 23.3 5.3 35 429-463 1-38 (39)
478 PF13449 Phytase-like: Esteras 64.8 1.1E+02 0.0024 31.9 12.8 108 395-505 20-164 (326)
479 PF13449 Phytase-like: Esteras 63.7 1.9E+02 0.0041 30.1 22.1 96 356-453 86-231 (326)
480 TIGR02276 beta_rpt_yvtn 40-res 63.1 23 0.00051 23.6 5.1 39 406-444 2-41 (42)
481 PF07250 Glyoxal_oxid_N: Glyox 63.0 82 0.0018 31.3 10.6 79 378-457 49-138 (243)
482 PF08801 Nucleoporin_N: Nup133 60.9 1.9E+02 0.0041 31.3 14.4 33 437-469 190-222 (422)
483 PF10395 Utp8: Utp8 family; I 59.1 3.3E+02 0.0071 31.3 17.0 31 250-280 129-159 (670)
484 PF07250 Glyoxal_oxid_N: Glyox 58.9 81 0.0018 31.3 9.8 121 420-547 49-200 (243)
485 TIGR03547 muta_rot_YjhT mutatr 57.5 2.5E+02 0.0053 29.4 16.5 178 359-537 58-333 (346)
486 COG5290 IkappaB kinase complex 57.5 1.5E+02 0.0033 34.2 12.3 107 398-514 250-364 (1243)
487 PRK14131 N-acetylneuraminic ac 55.9 2.8E+02 0.006 29.5 18.5 39 375-415 189-230 (376)
488 TIGR02276 beta_rpt_yvtn 40-res 55.6 48 0.0011 22.0 5.7 39 364-402 1-41 (42)
489 PF03088 Str_synth: Strictosid 55.3 32 0.00068 28.2 5.3 41 414-454 34-74 (89)
490 PF12768 Rax2: Cortical protei 54.8 1.5E+02 0.0034 30.1 11.3 98 417-518 16-124 (281)
491 PF05935 Arylsulfotrans: Aryls 52.9 2.9E+02 0.0063 30.5 14.2 129 339-472 132-307 (477)
492 smart00036 CNH Domain found in 52.8 2.8E+02 0.006 28.5 21.0 113 353-465 41-182 (302)
493 PF10214 Rrn6: RNA polymerase 51.8 4.8E+02 0.01 30.9 23.2 145 352-503 77-263 (765)
494 COG1520 FOG: WD40-like repeat 50.1 3.4E+02 0.0073 28.7 19.1 108 363-473 66-178 (370)
495 COG4247 Phy 3-phytase (myo-ino 49.8 2.7E+02 0.0059 27.6 12.8 145 396-544 57-232 (364)
496 PF08801 Nucleoporin_N: Nup133 48.2 1.6E+02 0.0035 31.9 11.2 21 525-545 200-220 (422)
497 PF12341 DUF3639: Protein of u 48.0 44 0.00095 20.6 3.7 26 437-464 2-27 (27)
498 KOG1898 Splicing factor 3b, su 47.2 5.9E+02 0.013 30.7 16.7 102 361-467 940-1049(1205)
499 PF10214 Rrn6: RNA polymerase 46.8 5.6E+02 0.012 30.4 25.2 120 345-468 133-278 (765)
500 PF10395 Utp8: Utp8 family; I 46.3 5.1E+02 0.011 29.8 17.0 117 354-473 129-266 (670)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-76 Score=624.53 Aligned_cols=634 Identities=43% Similarity=0.718 Sum_probs=454.1
Q ss_pred CCCcccccccccccccCCCCCCCCCCcCCCCCCccccccccCCCcHHHHHHHHHHhhcCCC-CCCCCCCCCCC-CCCCCc
Q 005646 6 EDEECPFFDASEDIASISGATSDSNDMFDSYYGFNSEVWVRTPKSVKERRSKFLDWMEAGL-DGLSGNKPVDM-GSFGGE 83 (686)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 83 (686)
+||||+|||+.|+|++ . |+||+..|+||.|||+|||++|||+. +.+.+..+... .....+
T Consensus 6 ~ee~~~f~~~~~~~~~----------------~--~~~w~~~p~sv~err~~~l~~mgls~~~~~~~~~~~~~~~~~~~~ 67 (712)
T KOG0283|consen 6 EEEEDRFFDASERVSP----------------D--YDLWTSSPGSVSERRRKFLNGMGLSSKKTLSRSETVDRLSSSSVE 67 (712)
T ss_pred ccccccccccccccCc----------------c--hhhhhcCccchhHHHHHHhhhhccccccccccccccccccccccc
Confidence 3555999999999972 1 99999999999999999999999996 34443333211 000000
Q ss_pred cccccccccccccccccccccccccccccccCCCCCCCCCCCCCcccCcCCCcceEEeccCCC-Cc-----ccccCceE-
Q 005646 84 DDGLCKSSGAVLRIAGIEEEFRSIRSVRSGRSNDNVELPEENFPCKDGNYDREMACDVDQMGP-DG-----QISNCREI- 156 (686)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-----~~~~~~~~- 156 (686)
+... .++-.+.++...+ ++..++.++ ..+ ...-..+.. .+.+.+.+|++... ++ +++++..+
T Consensus 68 ~~~~------~~~~~~v~~~~~~-~~~~~~~~s-~~~-~~~~~~~~~--~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~ 136 (712)
T KOG0283|consen 68 SNVD------ESNHNSVEDTDSE-QCRPSSSSS-KSR-VSQSSSSIE--LDTGDEFSVSENPEDGSVNRLSDVGTGASST 136 (712)
T ss_pred cccc------ccccccccccccc-cCCcccccc-ccc-cccccccee--ecccceeeEeeccCccccccccCCCcccccc
Confidence 0000 0000011111111 111110000 000 000001111 24555555566643 22 45554444
Q ss_pred --EEEEeccccchhHHHHHhhccc-----------------hhhHHHHHHhHHhhcccceeeecccCc--ceeeecCCC-
Q 005646 157 --YLENTSELLPLMDEIVEKESSA-----------------AGKAERVKKRWFSRLRSLACVVDKQGE--GERVRLNEE- 214 (686)
Q Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~- 214 (686)
+++...+..+.++++++++... ..+.++..+.|++.++.+++......+ ...+..+..
T Consensus 137 ~e~~e~~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l~~~k~~~~~~s~~~~~~~~~~~~d~~~ 216 (712)
T KOG0283|consen 137 LEELESSPGESSRVKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWLKSLKVVAHSLSSLSENRRSRFDSDSSS 216 (712)
T ss_pred cccccCCcCcccchhhhhhhcccccchhhcccccccccccccchhhhhhhhhhhhccccccccccccccccccccccchh
Confidence 6777777888888887754332 122455566688888887776553311 111111110
Q ss_pred ----cc--ceeec--------cceEEEEEcCCccccccccccCceec-ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 215 ----DA--MFCSK--------VQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 215 ----~l--~~g~~--------d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
++ ..+.. ..++++-...+..+++..++..|+++ +|++.|++|+||+||+||||||+||.||||.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkV 296 (712)
T KOG0283|consen 217 QFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKV 296 (712)
T ss_pred cccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEE
Confidence 10 11111 16789999999999999999999999 99999999999999999999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeecc-ccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK-EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
...+. +........++.+..+....+....... .........++.....++.++.+++.+.++|++.|.||.++|+
T Consensus 297 ie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DIL 373 (712)
T KOG0283|consen 297 IESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADIL 373 (712)
T ss_pred eccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhhe
Confidence 88664 3444455566666666555554444444 2223334445556666689999999999999999999999999
Q ss_pred EEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc
Q 005646 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (686)
Q Consensus 359 ~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~ 438 (686)
+|+||.+++|+++|+|+|||||++.+..|+++|.|.++||||+|+|.|++||++|+.||+||||++...+++.|.+.+..
T Consensus 374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~l 453 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDL 453 (712)
T ss_pred ecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC--
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG-- 516 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~-- 516 (686)
|+++||.|||++.++|+.+|.|++|++...+++...++..+..++....+|++++|.|.+...|+++++|.+|||+|+
T Consensus 454 ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 454 ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred heeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 999999999999999999999999999999999999999988777766699999999988889999999999999999
Q ss_pred Ccce---------------eEcCCCCEEEEEeCCCcEEEEeCCCCCC-CCccccccccccccccC-CcEEEecCCCCcCC
Q 005646 517 PNVI---------------GKYKDGKHIVSAGEDSNVYMWNCIGHEE-PAHDQAKTIRSLERFTT-NASIAIPWCGLKCG 579 (686)
Q Consensus 517 ~~~~---------------~~~~dg~~l~sgs~Dg~V~iWd~~~~~~-~~~~~~~~~~~~~~~~~-~~~v~~s~~g~~~~ 579 (686)
...+ .|..||++|++|++|..||||++..... ......+.++.++.|.+ +.++++.|.|...-
T Consensus 534 ~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~ 613 (712)
T KOG0283|consen 534 KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAH 613 (712)
T ss_pred hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCccccccccccccccccccccccccccccccccccc
Confidence 3333 3555999999999999999999976542 23345667899999999 99999999987553
Q ss_pred CCCCCCcccccCCCCCcccccCCCccccCcccccc-----CCCCCCCCCCCCcCCCccccccccccchhhHHhhhccccc
Q 005646 580 NAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFE-----SFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLC 654 (686)
Q Consensus 580 ~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~-----s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (686)
+...+..-.... +..|. ..+... -.++...+|+++++..... .......++++..+.|+.
T Consensus 614 n~ss~~p~~~~~-------~~~~~-----~~~~~s~~~~~~~~~~s~t~~e~~~~~s~~---~~~~~~~~~~~~~S~~~~ 678 (712)
T KOG0283|consen 614 NPSSNLPPLIKA-------ALRPV-----NEFKLSSPMRSLNSRGSATWPEEKLLDSPG---ASASSRSSIKFLMSGCQR 678 (712)
T ss_pred cccccCCCCccc-------ccCcc-----cccccCCccccccccccccCcccccccccC---cccccccccccccCCCcc
Confidence 321110000000 01111 111111 2336778999988774321 122334444566666664
Q ss_pred Cc--cCCCCceEEEEecCCCeEeEEeecCCCcCC
Q 005646 655 TT--SSHAWGLVIVTAGWDGRIRSFLNYGLPIPV 686 (686)
Q Consensus 655 ~~--~~~~~g~~ivT~~~DG~Ir~w~~~g~p~~~ 686 (686)
.. .+++||++|+||++||.||+|||||||+++
T Consensus 679 ~~~~~~~~wg~vivTs~~~g~Ir~~~n~glp~~~ 712 (712)
T KOG0283|consen 679 SSSSSPHAWGMVIVTSTLDGQIRCFQNYGLPRRV 712 (712)
T ss_pred ccccccCCCcceeeeccccceEEEEEecCCCCCC
Confidence 42 257999999999999999999999999985
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-41 Score=329.45 Aligned_cols=312 Identities=21% Similarity=0.328 Sum_probs=251.8
Q ss_pred cCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 242 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
....+.||.++|.|+.|+|+|.+|+||+.|.++|+||+.+.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--------------------------------------- 147 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--------------------------------------- 147 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---------------------------------------
Confidence 34568899999999999999999999999999999999874
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeee-Eee-CCCCeE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR-VFP-HSNYVT 398 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~-~~~-h~~~V~ 398 (686)
.|.++.++|...|.|++|+||| .||+|+.||+|++||..+++++. .+. |...|+
T Consensus 148 -----------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It 204 (480)
T KOG0271|consen 148 -----------------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWIT 204 (480)
T ss_pred -----------------------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccccee
Confidence 3778889999999999999999 99999999999999999998764 455 999999
Q ss_pred EEEEeec----CCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 399 CVHFNPV----DDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 399 ~v~fsp~----~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
+++|.|. ..++|++++.||.|+|||+..+.++ ...+|..+|+|++|--+| +|++|+.|++|++|+...+.+..
T Consensus 205 ~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r- 282 (480)
T KOG0271|consen 205 ALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCR- 282 (480)
T ss_pred EEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHH-
Confidence 9999883 4579999999999999999998877 677899999999998776 89999999999999998876543
Q ss_pred eeEEeeccccCCCCCeEEEEEeC-----------------------------------CCCCeEEEEeCCCcEEEEeCC-
Q 005646 474 AEICVHSKKKAPCKRITGFQFLP-----------------------------------QDSSKVMVSCADSQVRILQGP- 517 (686)
Q Consensus 474 ~~~~~~~~~~~~~~~I~~l~fsp-----------------------------------~~~~~l~~~s~D~~I~iwd~~- 517 (686)
..++|...|+.++++. +.+..|++++.|.++.+|+..
T Consensus 283 -------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~ 355 (480)
T KOG0271|consen 283 -------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK 355 (480)
T ss_pred -------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc
Confidence 2566778888888772 123358888888888888743
Q ss_pred ---------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCC
Q 005646 518 ---------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAE 582 (686)
Q Consensus 518 ---------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~ 582 (686)
+.+.|+||+++||++|-|..|++|+-.+
T Consensus 356 ~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t------------------------------------- 398 (480)
T KOG0271|consen 356 SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT------------------------------------- 398 (480)
T ss_pred cccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-------------------------------------
Confidence 3467888888888888888888888766
Q ss_pred CCCcccccCCCCC--cccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCC
Q 005646 583 KEPQLHVSDDDSP--ENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHA 660 (686)
Q Consensus 583 ~g~~l~~~~~~~~--~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (686)
|+.+..|.+|-. +.+++|.| ...++++|.|.++++|+..+......+ ++... ..+++- -++
T Consensus 399 -Gk~lasfRGHv~~VYqvawsaD----sRLlVS~SkDsTLKvw~V~tkKl~~DL---pGh~D--------EVf~vD-wsp 461 (480)
T KOG0271|consen 399 -GKFLASFRGHVAAVYQVAWSAD----SRLLVSGSKDSTLKVWDVRTKKLKQDL---PGHAD--------EVFAVD-WSP 461 (480)
T ss_pred -cchhhhhhhccceeEEEEeccC----ccEEEEcCCCceEEEEEeeeeeecccC---CCCCc--------eEEEEE-ecC
Confidence 455666665543 44577888 567788999999999996654422222 11111 223332 345
Q ss_pred CceEEEEecCCCeEeEEe
Q 005646 661 WGLVIVTAGWDGRIRSFL 678 (686)
Q Consensus 661 ~g~~ivT~~~DG~Ir~w~ 678 (686)
+|..+++||.|..+|+|.
T Consensus 462 DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 462 DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceeecCCCceEEEeec
Confidence 699999999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-40 Score=323.77 Aligned_cols=269 Identities=21% Similarity=0.360 Sum_probs=232.1
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|.+.+ ..|++++..+++|+.|.++++||+..... ..+.++|...|.|++|+|||+.||||+.||+|++||
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------ceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 455555 45778888999999999999999877654 467889999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
..+++. ....|.+|...|+
T Consensus 186 pktg~~-------------------------------------------------------------~g~~l~gH~K~It 204 (480)
T KOG0271|consen 186 PKTGQQ-------------------------------------------------------------IGRALRGHKKWIT 204 (480)
T ss_pred CCCCCc-------------------------------------------------------------ccccccCccccee
Confidence 998872 3456789999999
Q ss_pred EEEeeCC-----C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-
Q 005646 359 DLSWSKN-----N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV- 430 (686)
Q Consensus 359 ~l~~s~~-----~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~- 430 (686)
+|+|.|- . +|++++.||+|+|||+..++|+..+. |..+|+|+.|- ...+|++|+.|++|++|+...+.+.
T Consensus 205 ~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r 282 (480)
T KOG0271|consen 205 ALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCR 282 (480)
T ss_pred EEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHH
Confidence 9999873 2 89999999999999999999999988 99999999996 4789999999999999999998876
Q ss_pred EEeccCCcEEEEEEc-----------cCCC-------------------------EEEEEecCCcEEEEeCCCCeeeeee
Q 005646 431 DWVDIRQIVTAVCYR-----------PDGQ-------------------------GGIVGSMMGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 431 ~~~~~~~~V~~v~~s-----------pdg~-------------------------~l~~gs~dg~i~iwd~~~~~~~~~~ 474 (686)
.+.+|...|+.++.+ |.|+ .+++|+.|.++.+|+-...+.
T Consensus 283 ~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk---- 358 (480)
T KOG0271|consen 283 ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK---- 358 (480)
T ss_pred hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc----
Confidence 566788888888776 3333 499999999999999765442
Q ss_pred eEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEE
Q 005646 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVY 539 (686)
Q Consensus 475 ~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~ 539 (686)
...+..+|..-|+.+.|+| ++.++++++.|..|++|++.+. ++|+.|.++|++||.|.+++
T Consensus 359 ---pi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 359 ---PITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLK 434 (480)
T ss_pred ---chhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEE
Confidence 1223567888899999999 8999999999999999997653 67888999999999999999
Q ss_pred EEeCCCCC
Q 005646 540 MWNCIGHE 547 (686)
Q Consensus 540 iWd~~~~~ 547 (686)
||++.+.+
T Consensus 435 vw~V~tkK 442 (480)
T KOG0271|consen 435 VWDVRTKK 442 (480)
T ss_pred EEEeeeee
Confidence 99999865
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-39 Score=319.60 Aligned_cols=260 Identities=22% Similarity=0.377 Sum_probs=233.9
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC--CCEEEEEeCCCcEEEEEeecC
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~vWd~~~~ 282 (686)
..+.|+.+++.++||+-+|.++||..... ...++|.+|...|.++.|+|. +..||||+.||++++|++.+.
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~-------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQC-------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCc-------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 45889999999999999999999976543 335789999999999999996 668999999999999999764
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
. ++..+.+|...|..++|
T Consensus 252 ~--------------------------------------------------------------~l~~l~gH~~RVs~Vaf 269 (459)
T KOG0272|consen 252 T--------------------------------------------------------------PLQDLEGHLARVSRVAF 269 (459)
T ss_pred c--------------------------------------------------------------chhhhhcchhhheeeee
Confidence 3 67788899999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcE
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIV 439 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V 439 (686)
+|+| +|+|++.|.+-++||+.++..+.... |...|.+++|+| +|.+++||+.|..-||||+++++++ .+.+|..+|
T Consensus 270 HPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I 348 (459)
T KOG0272|consen 270 HPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEI 348 (459)
T ss_pred cCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccce
Confidence 9999 99999999999999999998766655 999999999999 9999999999999999999999877 666899999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
.+|+|+|+|..||+|+.|++++|||++...... ...+|..-|+.+.|.|+.+.+|++++.|++++||...+.
T Consensus 349 ~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly--------~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 349 LSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY--------TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred eeEeECCCceEEeecCCCCcEEEeeecccccce--------ecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 999999999999999999999999998776532 245677889999999988999999999999999986542
Q ss_pred ---------------eeEcCCCCEEEEEeCCCcEEEEe
Q 005646 520 ---------------IGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 520 ---------------~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
+..++|+++|+|++.|.++++|.
T Consensus 421 ~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 56888999999999999999996
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.8e-37 Score=301.07 Aligned_cols=263 Identities=21% Similarity=0.361 Sum_probs=230.5
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+-+.+|..+.|++|++.|||||.+|.++||+..+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-------------------------------------------- 208 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-------------------------------------------- 208 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc--------------------------------------------
Confidence 467899999999999999999999999999987754
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEe
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFN 403 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fs 403 (686)
.+++|.||...|.++.|+|. + .|+||+.||+|++|++.+..++..+. |...|..++|+
T Consensus 209 ------------------~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 209 ------------------LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFH 270 (459)
T ss_pred ------------------eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeec
Confidence 46788999999999999997 4 99999999999999999999998887 99999999999
Q ss_pred ecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc
Q 005646 404 PVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (686)
Q Consensus 404 p~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 482 (686)
| +|++|+|++.|.+-|+||++++..+ ...+|...|.+++|+|||..+++|+.|..-+|||+++++.++. .
T Consensus 271 P-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--------L 341 (459)
T KOG0272|consen 271 P-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--------L 341 (459)
T ss_pred C-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--------e
Confidence 9 9999999999999999999998755 6778999999999999999999999999999999999987653 3
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcC-CCCEEEEEeCCCcEEEEeCCCC
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYK-DGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.+|.+.|.+++|+| ++..|++|+.|++++|||+. +.+++.| .|.+|+|++.|++++||.-.+.
T Consensus 342 ~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 342 AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred cccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 45789999999999 99999999999999999954 4578887 8999999999999999998774
Q ss_pred CCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCccc--ccCCCccccCccccccCCCCCCCCCC
Q 005646 547 EEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENL--AFAPARFSLGQEYVFESFPKGCATWP 624 (686)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~--~~spd~~~~~~~~~~~s~d~~~~~W~ 624 (686)
. ++++ +.+|...++ ..+|| ++.+.+.+.|++++.|.
T Consensus 421 ~--------~~ks------------------------------LaGHe~kV~s~Dis~d----~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 S--------PLKS------------------------------LAGHEGKVISLDISPD----SQAIATSSFDRTIKLWR 458 (459)
T ss_pred c--------cchh------------------------------hcCCccceEEEEeccC----CceEEEeccCceeeecc
Confidence 4 3333 333443333 34666 66777889999999996
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-35 Score=274.89 Aligned_cols=269 Identities=20% Similarity=0.402 Sum_probs=225.4
Q ss_pred cccCcceeeec---CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 201 DKQGEGERVRL---NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 201 ~~~~~~~~~s~---~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
.|.+++..++. +.+.+++++.|..+.+|++..... ......+.|.||...|..+..++||++.++++.|+++|+|
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~--~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI--KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc--ccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 46666655542 356889999999999999876533 3333446689999999999999999999999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
|+.+++ +.+.|.||...|
T Consensus 91 Dl~~g~--------------------------------------------------------------~t~~f~GH~~dV 108 (315)
T KOG0279|consen 91 DLATGE--------------------------------------------------------------STRRFVGHTKDV 108 (315)
T ss_pred EecCCc--------------------------------------------------------------EEEEEEecCCce
Confidence 999875 456778999999
Q ss_pred eEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecC-CCEEEEEEcCCcEEEEecCCCcEE-EE
Q 005646 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD-DNYFISGSIDGKVRIWAVLSCHVV-DW 432 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~-~~~l~sgs~Dg~V~iwd~~~~~~~-~~ 432 (686)
++++|++++ .+++||.|++|++|++-......... +.+.|+|+.|+|.. ..+|++++.|++|++||+++.++. .+
T Consensus 109 lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~ 188 (315)
T KOG0279|consen 109 LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF 188 (315)
T ss_pred EEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc
Confidence 999999999 99999999999999986554444333 47999999999942 789999999999999999999887 67
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
.+|...++.++++|||..+++|+.||.+.+||++.++... ...+...|.+++|+| +...| ....+..|+
T Consensus 189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly---------sl~a~~~v~sl~fsp-nrywL-~~at~~sIk 257 (315)
T KOG0279|consen 189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY---------SLEAFDIVNSLCFSP-NRYWL-CAATATSIK 257 (315)
T ss_pred ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE---------eccCCCeEeeEEecC-CceeE-eeccCCceE
Confidence 7899999999999999999999999999999999887543 344668899999999 54444 444555699
Q ss_pred EEeCCc------------------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 513 ILQGPN------------------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 513 iwd~~~------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
|||..+ .++|++||+.|++|-.|+.|++|.+.
T Consensus 258 Iwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 258 IWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999542 26788999999999999999999875
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=271.68 Aligned_cols=262 Identities=20% Similarity=0.381 Sum_probs=229.2
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
-.|++++.|.+|++|+... .....+++...+.|+.+...|++++||+|+. ..||+||+.++.
T Consensus 11 viLvsA~YDhTIRfWqa~t-------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n---------- 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALT-------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN---------- 72 (311)
T ss_pred eEEEeccCcceeeeeehhc-------CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC----------
Confidence 3789999999999996544 3345677777889999999999999999987 689999998875
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s 372 (686)
..|+.++.+|...|+.+.|..+| .+++||
T Consensus 73 --------------------------------------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs 102 (311)
T KOG0315|consen 73 --------------------------------------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGS 102 (311)
T ss_pred --------------------------------------------------CCceeEEeccCCceEEEEEeecCeEEEecC
Confidence 24788999999999999999999 999999
Q ss_pred CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE--EeccCCcEEEEEEccCCCE
Q 005646 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~ 450 (686)
.||+++|||++...|.+.|.|..+|+++..+| +...|++|..+|.|++||+....+.. .......|.++...|||.+
T Consensus 103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred CCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 99999999999999999999999999999999 88899999999999999999875542 2234578999999999999
Q ss_pred EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----------
Q 005646 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV----------- 519 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~----------- 519 (686)
++.+...|++++|++-+... ..++....+.++|...|....++| +.++|+++++|.+++||+..+.
T Consensus 182 l~a~nnkG~cyvW~l~~~~~--~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQT--ASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred EEEecCCccEEEEEccCCCc--cccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 99999999999999977432 233444455788999999999999 8999999999999999987654
Q ss_pred -----eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 -----IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 -----~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+|+.||+||+||+.|+.+++|++..++
T Consensus 259 rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 259 RWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 4577899999999999999999999987
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.9e-35 Score=274.43 Aligned_cols=276 Identities=21% Similarity=0.366 Sum_probs=233.4
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
++|++|.+.|.+|.|++|.++|++++.||.+.|||.-+....+.+..+..-+...+|.|.. ....
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-------------~~VA-- 113 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-------------NFVA-- 113 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-------------CeEE--
Confidence 5789999999999999999999999999999999999988888777665444333443332 2111
Q ss_pred eeccCCceEEEeCCcccc--ccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEE
Q 005646 324 LRRTSESACVVFPPKVFR--ILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v 400 (686)
-++.+..|.+|+...-+ -..+..+++.+|.+.+.|+.|-+|++|+|+|.|.++.+||+++++.+..|. |.+.|.++
T Consensus 114 -cGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 114 -CGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred -ecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 13445666666666432 222456778999999999999998899999999999999999999999998 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
.++|.+++.|++|+-|+..+|||++.+.++ .+.+|...|++|+|.|+|.-+++|+.|+++|+||++..+.....+
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys---- 268 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS---- 268 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec----
Confidence 999999999999999999999999999887 566899999999999999999999999999999999876543222
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
......+|++++|+. .+.+|++|..|.++.+||.. +++..+|||.-|+|||.|.+++||.
T Consensus 269 --~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 269 --HDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --cCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 233457799999999 88999999999999999953 4688999999999999999999995
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=295.97 Aligned_cols=427 Identities=17% Similarity=0.200 Sum_probs=312.2
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecc-cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQA-HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+.+++..|++++..+.+++|++.... ....+++ |++||..|+|+|.|.+|+|||.|+.++|||+..+.+.
T Consensus 68 ~~l~~d~~~L~~a~rs~llrv~~L~tgk-------~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQLLRVWSLPTGK-------LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred eeecCCccEEEEeeccceEEEEEcccch-------HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 4567788899999999999999887652 2344566 9999999999999999999999999999999999999
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
+.+..+...++.+.|.+.....+. ..+..+....+|+...-+ .+++.+..|.+.|++|+++++
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL--------------~sg~~D~~v~vwnl~~~~---tcl~~~~~H~S~vtsL~~~~d 203 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLL--------------ASGATDGTVRVWNLNDKR---TCLHTMILHKSAVTSLAFSED 203 (775)
T ss_pred EEecCCCceEEEEEeCCccchhhe--------------eecCCCceEEEEEcccCc---hHHHHHHhhhhheeeeeeccC
Confidence 999988877777777665543211 122334444444444222 257888899999999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecC-----CCEEEEEEcCCcEEEEe----------------
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVD-----DNYFISGSIDGKVRIWA---------------- 423 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~-----~~~l~sgs~Dg~V~iwd---------------- 423 (686)
+ .+++++.|+.+.|||+.+.+++++++-...+.++.+-+ + +.+++|.+.+|.+++||
T Consensus 204 ~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~-~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~ 282 (775)
T KOG0319|consen 204 SLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLR-EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE 282 (775)
T ss_pred CceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEec-hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch
Confidence 9 99999999999999997766666664444444444444 3 33555555555555554
Q ss_pred ----------------------------------------------------------------------cCCCcEEEEe
Q 005646 424 ----------------------------------------------------------------------VLSCHVVDWV 433 (686)
Q Consensus 424 ----------------------------------------------------------------------~~~~~~~~~~ 433 (686)
+.+..+.-..
T Consensus 283 e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~ 362 (775)
T KOG0319|consen 283 EIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIP 362 (775)
T ss_pred hhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEe
Confidence 4444444456
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
+|.+.|.++....+|-+|++|+.|.++++|.++++.... .......+|...|.+++++......+++++.|.++++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~----~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS----LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh----hhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 788889999977788899999999999999985443322 1222356788999999999888889999999999999
Q ss_pred EeCC------------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccc--cccccccccccCC-
Q 005646 514 LQGP------------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQ--AKTIRSLERFTTN- 566 (686)
Q Consensus 514 wd~~------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~--~~~~~~~~~~~~~- 566 (686)
|+.. ++++..|+.++|||||.|.+.+||++........+. .+.+.+. .|..+
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V-~Fs~~d 517 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV-SFSKND 517 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE-Eecccc
Confidence 9864 457888999999999999999999999655333322 2333333 45553
Q ss_pred -cEEEecCCCC-cCCCCCCCCcccccCCCCCccc--ccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccch
Q 005646 567 -ASIAIPWCGL-KCGNAEKEPQLHVSDDDSPENL--AFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHK 642 (686)
Q Consensus 567 -~~v~~s~~g~-~~~~~~~g~~l~~~~~~~~~~~--~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~ 642 (686)
....-+-|.+ ++|.+.+...+.+|.+|...++ .|-.+ +..++++.+|+-+++|+..+......+. .
T Consensus 518 q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~----~~qliS~~adGliKlWnikt~eC~~tlD------~ 587 (775)
T KOG0319|consen 518 QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN----GKQLISAGADGLIKLWNIKTNECEMTLD------A 587 (775)
T ss_pred ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC----CcEEEeccCCCcEEEEeccchhhhhhhh------h
Confidence 2222233333 7999999999999999988877 45544 6778899999999999987766543331 1
Q ss_pred hhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 643 SQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
|-.-+ .+.+.+ +.+.+|+|||.||.|-+|+.
T Consensus 588 -H~Drv----WaL~~~-~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 588 -HNDRV----WALSVS-PLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred -cccee----EEEeec-CccceeEecCCCeEEEEeec
Confidence 11111 111222 33669999999999999975
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-33 Score=265.01 Aligned_cols=298 Identities=23% Similarity=0.369 Sum_probs=232.4
Q ss_pred CceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 243 GQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
..++.+|++.|+.++..+. .+.|++++.|.++.+|++.....
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------------------------- 50 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------------------------- 50 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc-------------------------------------
Confidence 3568899999999999886 66899999999999999976420
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~ 399 (686)
..+.+++.+.||...|.++..+++| +.++++.|+++++||+.++++.+.|- |...|.+
T Consensus 51 --------------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVls 110 (315)
T KOG0279|consen 51 --------------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLS 110 (315)
T ss_pred --------------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEE
Confidence 0125788899999999999999999 99999999999999999998888887 9999999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc--CCcEEEEEEccC--CCEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI--RQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--~~~V~~v~~spd--g~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
++|+| +...+++|+.|.+|.+|++........... ++.|++++|+|+ ..+|+.++.|++|++||+++.++..
T Consensus 111 va~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~--- 186 (315)
T KOG0279|consen 111 VAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT--- 186 (315)
T ss_pred EEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh---
Confidence 99999 999999999999999999998877766554 788999999997 6799999999999999998876543
Q ss_pred EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccc
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAK 555 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~ 555 (686)
...+|.+.++.+.++| ||..+++|+.||.+.+||++.++
T Consensus 187 -----~~~gh~~~v~t~~vSp----------------------------DGslcasGgkdg~~~LwdL~~~k-------- 225 (315)
T KOG0279|consen 187 -----TFIGHSGYVNTVTVSP----------------------------DGSLCASGGKDGEAMLWDLNEGK-------- 225 (315)
T ss_pred -----ccccccccEEEEEECC----------------------------CCCEEecCCCCceEEEEEccCCc--------
Confidence 2456788899999999 99999999999999999999876
Q ss_pred cccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccc
Q 005646 556 TIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLS 635 (686)
Q Consensus 556 ~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~ 635 (686)
.+.+++++... ..++|+|.++.+. ...+..+++|+.+.....-.+.
T Consensus 226 ~lysl~a~~~v-----------------------------~sl~fspnrywL~-----~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 226 NLYSLEAFDIV-----------------------------NSLCFSPNRYWLC-----AATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred eeEeccCCCeE-----------------------------eeEEecCCceeEe-----eccCCceEEEeccchhhhhhcc
Confidence 34455444332 3356677654444 2234457888866544322211
Q ss_pred cccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 636 SASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
.-..-. .-+.-.-.|...+ .+++|+.|..|-.||.||+|+.
T Consensus 272 ~d~~g~--s~~~~~~~clsla-ws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 272 LDGIGP--SSKAGDPICLSLA-WSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cccccc--ccccCCcEEEEEE-EcCCCcEEEeeecCCcEEEEEe
Confidence 000000 0011111355443 4556999999999999999986
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-34 Score=304.76 Aligned_cols=245 Identities=27% Similarity=0.462 Sum_probs=214.0
Q ss_pred CcceeeecCCCccceeeccceEEEEEcCCcc-------ccc-----------------cccccCceecccCCceEEEEEe
Q 005646 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRS-------KEL-----------------SALYKGQEIQAHDGSILTMKFS 259 (686)
Q Consensus 204 ~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~-------~~~-----------------~~~~~~~~l~~H~~~I~~l~fs 259 (686)
..+..|+.+...+|.|-.|..|++|.+.... ..+ .......++.||.++|..+.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 3567788888999999999999999987311 000 1112224588999999999999
Q ss_pred eCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcc
Q 005646 260 PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV 339 (686)
Q Consensus 260 pdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (686)
|+.++|+++++|++||+|.+.+..
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s-------------------------------------------------------- 484 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWS-------------------------------------------------------- 484 (707)
T ss_pred ccccceeeccCCcceeeeecccce--------------------------------------------------------
Confidence 999999999999999999998765
Q ss_pred ccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCC
Q 005646 340 FRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDG 417 (686)
Q Consensus 340 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg 417 (686)
.+..++||..+|+++.|+|.| ++||+|.|++.++|.....++++.|. |.+.|.|+.|+| +.+|+++||.|.
T Consensus 485 ------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~ 557 (707)
T KOG0263|consen 485 ------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDR 557 (707)
T ss_pred ------eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCc
Confidence 344567899999999999999 99999999999999999999999998 999999999999 999999999999
Q ss_pred cEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 418 KVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 418 ~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+||+||+.++..+ .+.+|+.+|++++|+|+|++|++|+.||.|.+||+.++.+.. ....|.+.|+++.|+.
T Consensus 558 tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~--------~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 558 TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK--------QLKGHTGTIYSLSFSR 629 (707)
T ss_pred eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh--------hhhcccCceeEEEEec
Confidence 9999999999888 456899999999999999999999999999999999887653 2456778999999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 497 QDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 497 ~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||..||+||.|.+|++||+....
T Consensus 630 ----------------------------dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 630 ----------------------------DGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ----------------------------CCCEEEecCCCCeEEEEEchhhc
Confidence 88899999999999999887644
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-32 Score=276.23 Aligned_cols=423 Identities=15% Similarity=0.200 Sum_probs=290.6
Q ss_pred ccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC--CCcEEEEEe
Q 005646 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD--DGVVRLWQV 279 (686)
Q Consensus 202 ~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I~vWd~ 279 (686)
++..+.+++|+|.++++|...|+|+||+......-+ ..+++.-.++|..|+|++|++.|+..|+ ++..+++-.
T Consensus 60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiL-----Knef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHIL-----KNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred ceeEEEEeCCCceEEeecCCcCcEEEEeccCcceee-----eeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 344578899999999999999999999986543322 4667778899999999999999988875 333444444
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+|..+.++..+......+.|.+..+ +.....+.+..+..|.-.-| +...+++.|...|.|
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRP---------------fRi~T~sdDn~v~ffeGPPF----KFk~s~r~HskFV~~ 195 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRP---------------FRIATGSDDNTVAFFEGPPF----KFKSSFREHSKFVNC 195 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCc---------------eEEEeccCCCeEEEeeCCCe----eeeecccccccceee
Confidence 56666666665554443333333222 12222333333333332222 223556789999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE---
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--- 431 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~--- 431 (686)
+.|+||| ++++++.||+|.+||-.++..+..+. |.+.|.++.|+| |+..|+|++.|.+++|||+.+.+++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEee
Confidence 9999999 99999999999999999999998886 999999999999 99999999999999999997754321
Q ss_pred -----------------------------------------EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 432 -----------------------------------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 432 -----------------------------------------~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
..+|...|+++..+||+++|++|+.||.|.-|+...+..
T Consensus 275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 235677899999999999999999999999999977653
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC----------------------------------
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG---------------------------------- 516 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~---------------------------------- 516 (686)
-.. ....|...|.+++-+. ...+++.+.|.++++.+.
T Consensus 355 ~~~-------~g~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 355 DRL-------AGKGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI 425 (603)
T ss_pred ccc-------ccccccceEEEEeecC--CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEec
Confidence 210 0133445555555443 234555555555555532
Q ss_pred --------------------CcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCC
Q 005646 517 --------------------PNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGL 576 (686)
Q Consensus 517 --------------------~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~ 576 (686)
..+++++|+++.++.|+.||.|+||.+...... ......++-.....+++++++.
T Consensus 426 ~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~-----ee~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 426 SDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK-----EEAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred CcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc-----ceeeeecccCCceEEEECCCCc
Confidence 134678889999999999999999999986621 1112222222366777888766
Q ss_pred -----------cCCCCCCCCccc---ccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccch
Q 005646 577 -----------KCGNAEKEPQLH---VSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHK 642 (686)
Q Consensus 577 -----------~~~~~~~g~~l~---~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~ 642 (686)
.+|+..+..... .|+......++|+|+ ...+.+++.|.++.+|+.++.... +....++..
T Consensus 501 yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~----n~~vATGSlDt~Viiysv~kP~~~--i~iknAH~~ 574 (603)
T KOG0318|consen 501 YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN----NKLVATGSLDTNVIIYSVKKPAKH--IIIKNAHLG 574 (603)
T ss_pred EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC----ceEEEeccccceEEEEEccChhhh--eEecccccc
Confidence 256655554421 123333456689999 556668999999999997764421 111111111
Q ss_pred hhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 643 SQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
+. ..+ .=.+...+|++|.|..||+|+.
T Consensus 575 gV--------n~v--~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 575 GV--------NSV--AWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred Cc--------eeE--EEecCceEEeccCcceeEEecc
Confidence 11 111 0113458999999999999974
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=253.63 Aligned_cols=277 Identities=20% Similarity=0.327 Sum_probs=231.8
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|..++ ..++++.+++++++.||++.|||.-+..|+ +.+.--...|..++|+|.|+++|.||-|....||+
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-------haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-------HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-------eEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 455555 456778889999999999999997766553 33455678999999999999999999999999999
Q ss_pred eecC------eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 279 VVED------ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 279 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
+.+. ...+++..+..-.+|+.|..+. ..+..+++..|..|+... .+.+..|.|
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-----------------~ilT~SGD~TCalWDie~----g~~~~~f~G 184 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-----------------HILTGSGDMTCALWDIET----GQQTQVFHG 184 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCC-----------------ceEecCCCceEEEEEccc----ceEEEEecC
Confidence 9865 2334455555555555555422 224567778888877664 357889999
Q ss_pred CCCCeeEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 353 HSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 353 h~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
|.+.|.+|+++| ++ .+++|+.|++.+|||++.+.|.+.|. |...|++|.|.| ++.-|++|+.|++.|+||++..+.
T Consensus 185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcE
Confidence 999999999999 55 99999999999999999999999998 999999999999 999999999999999999999888
Q ss_pred EEEeccC---CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 430 VDWVDIR---QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 430 ~~~~~~~---~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
+..+.+. .+|++++|+..|++|++|..|.++.+||.-.++... ...+|..+|+++..+| ++..+++|+
T Consensus 264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg--------~L~GHeNRvScl~~s~-DG~av~TgS 334 (343)
T KOG0286|consen 264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG--------VLAGHENRVSCLGVSP-DGMAVATGS 334 (343)
T ss_pred EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE--------EeeccCCeeEEEEECC-CCcEEEecc
Confidence 8766654 579999999999999999999999999986665432 2457889999999999 999999999
Q ss_pred CCCcEEEEe
Q 005646 507 ADSQVRILQ 515 (686)
Q Consensus 507 ~D~~I~iwd 515 (686)
.|..+|||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 14
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-33 Score=272.45 Aligned_cols=236 Identities=26% Similarity=0.436 Sum_probs=200.9
Q ss_pred cCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 242 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
..+.++.|+..|+-+.||++|+||||++.|.+..||++.....+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~------------------------------------ 259 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF------------------------------------ 259 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce------------------------------------
Confidence 34678899999999999999999999999999999998654311
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeC--CCCeE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVT 398 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h--~~~V~ 398 (686)
+..+++.+|..+|.-+.||||. +|++++.|..+.+||+.++.+...+.+ ...+.
T Consensus 260 -----------------------kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~ 316 (519)
T KOG0293|consen 260 -----------------------KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS 316 (519)
T ss_pred -----------------------eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc
Confidence 3467888999999999999999 999999999999999999999999984 48999
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC-CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
+++|.| |+..|++|+.|+++..||+.....-.|.+.+ ..|.++++++||+++++.+.|..|++|+..+.....
T Consensus 317 sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~----- 390 (519)
T KOG0293|consen 317 SCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG----- 390 (519)
T ss_pred eeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----
Confidence 999999 9999999999999999999887766777665 459999999999999999999999999987543221
Q ss_pred eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce-----------------eEc-CCCCEEEEEeCCCcEE
Q 005646 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI-----------------GKY-KDGKHIVSAGEDSNVY 539 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~-----------------~~~-~dg~~l~sgs~Dg~V~ 539 (686)
......+|++++.+. +++++++.-.+..|++||..... ||- .+..++++||+|+.||
T Consensus 391 ----lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 391 ----LISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred ----cccccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEE
Confidence 122336799999999 88999999999999999976421 111 1668999999999999
Q ss_pred EEeCCCCC
Q 005646 540 MWNCIGHE 547 (686)
Q Consensus 540 iWd~~~~~ 547 (686)
||+..+++
T Consensus 466 IWhr~sgk 473 (519)
T KOG0293|consen 466 IWHRISGK 473 (519)
T ss_pred EEEccCCc
Confidence 99988755
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.9e-31 Score=266.74 Aligned_cols=311 Identities=19% Similarity=0.280 Sum_probs=239.1
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+.+++++|+.+++++.|++|.+||-+...+.. ....-.+|++.|.+++|+||+..++|++.|.+++|||+.+.++
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDGktge~vg----~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG----ELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcCCCccEEE----EecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 457788999999999999999999876554311 1111348999999999999999999999999999999999998
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+.++.....-. .+...+.|.++....+ +..+.+-.+++.. ..+++.+.||...|++|..+|
T Consensus 270 v~t~~~~~~v~----------dqqvG~lWqkd~lItV-----Sl~G~in~ln~~d----~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 270 VSTWPMGSTVE----------DQQVGCLWQKDHLITV-----SLSGTINYLNPSD----PSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred EEEeecCCchh----------ceEEEEEEeCCeEEEE-----EcCcEEEEecccC----CChhheecccccceeEEEEcC
Confidence 88876554311 1111222221111111 1122222222222 237788999999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-------------
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH------------- 428 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~------------- 428 (686)
++ +|++|+.||.|.-|+..++.+-+... |...|.+++-+. ...+++++.|.+|++.++....
T Consensus 331 d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP 408 (603)
T KOG0318|consen 331 DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP 408 (603)
T ss_pred CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC--CCcEEEEecCCeEEEEecccCcccccceeecCCCc
Confidence 99 99999999999999999998887764 999999999864 4667888999999999774210
Q ss_pred -------------------EEEE--------eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 429 -------------------VVDW--------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 429 -------------------~~~~--------~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
++.+ ....-...+++++|+++.+++|+.||.|+||.+....+.-.. .
T Consensus 409 ~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~------~ 482 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA------K 482 (603)
T ss_pred eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccccee------e
Confidence 0001 112234678999999999999999999999999987653222 2
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC----------------cceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
...|..+|+.++|+| ++.+|+++...+.+-+||.. ++++|+|+.+++||||.|-.|.||+++.
T Consensus 483 ~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred eecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 345778999999999 89999999999999999964 4589999999999999999999999988
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
+.
T Consensus 562 P~ 563 (603)
T KOG0318|consen 562 PA 563 (603)
T ss_pred hh
Confidence 65
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.9e-33 Score=279.12 Aligned_cols=236 Identities=24% Similarity=0.430 Sum_probs=204.0
Q ss_pred CceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 243 GQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
...+.+|+..|.++.|.| .+.+|+++|.|+.|+||++....
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------------------------------------- 248 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------------------------------------- 248 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------------------------------------
Confidence 467899999999999999 89999999999999999997633
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV 400 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v 400 (686)
+++++|.||..+|.+++|+++| .++|+|.|++|++||+++|+++..|.....++|+
T Consensus 249 -----------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv 305 (503)
T KOG0282|consen 249 -----------------------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV 305 (503)
T ss_pred -----------------------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence 4678899999999999999999 9999999999999999999999999999999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
.|+|.+.+.|++|+.|++|+.||+++++++... .|-+.|..+.|-++|+++++.+.|++++||+....-.....
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i----- 380 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI----- 380 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhh-----
Confidence 999955599999999999999999999988544 46688999999999999999999999999998765432211
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------------------cceeEcCCCCEEEEEeCCCcEE
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------------NVIGKYKDGKHIVSAGEDSNVY 539 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------------~~~~~~~dg~~l~sgs~Dg~V~ 539 (686)
...+.....++..+| +++.++.-+.|+.|.++... ..+.|+|||.+|++|+.||.++
T Consensus 381 --~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 381 --ADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred --cchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence 112223477899999 78888888999999988743 2367888999999999999999
Q ss_pred EEeCCCCC
Q 005646 540 MWNCIGHE 547 (686)
Q Consensus 540 iWd~~~~~ 547 (686)
+||.++-+
T Consensus 458 ~wdwkt~k 465 (503)
T KOG0282|consen 458 FWDWKTTK 465 (503)
T ss_pred Eeechhhh
Confidence 99988754
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.7e-33 Score=272.88 Aligned_cols=264 Identities=22% Similarity=0.334 Sum_probs=229.3
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+.++.++|..|++|+..|.+.+|+...... ...+++|..+|++|.|+++|.+++||..+|.|++|+..-..
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn- 171 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN- 171 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeH-------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-
Confidence 4567789999999999999999997532221 13467899999999999999999999999999999975432
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc-CCCCeeEEEee
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSWS 363 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s 363 (686)
++.+++ |...|.+++|+
T Consensus 172 --------------------------------------------------------------Vk~~~ahh~eaIRdlafS 189 (464)
T KOG0284|consen 172 --------------------------------------------------------------VKIIQAHHAEAIRDLAFS 189 (464)
T ss_pred --------------------------------------------------------------hHHhhHhhhhhhheeccC
Confidence 233344 45899999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEE
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~ 440 (686)
|+. .++++|.|++|+|||....+.-..+. |.-.|.|++|+| ...++++|+.|..|++||.+++.++ .+..|+..|.
T Consensus 190 pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl 268 (464)
T KOG0284|consen 190 PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVL 268 (464)
T ss_pred CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEE
Confidence 987 99999999999999999988877777 999999999999 8899999999999999999999988 6678899999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--- 517 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--- 517 (686)
++.|+|++++|++++.|..|++||+++.+..+ ..++|.+.++++.|+|-...++.+++.||.|..|...
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~--------~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF--------TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHHH--------HhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence 99999999999999999999999998544322 2466889999999999999999999999999999854
Q ss_pred -------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 -------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 -------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..++++|=|..|++|+.|.++++|.-..+.
T Consensus 341 p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 341 PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 237889999999999999999999876644
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-30 Score=272.31 Aligned_cols=380 Identities=18% Similarity=0.256 Sum_probs=297.1
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccc-cccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSK-ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~-~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.+..|+++|..+|.+ ..+.+.||...+..+ ++......+++.+|-..|++|.|+.|.++|++|+.|.++|||.+...+
T Consensus 100 ~~i~fSPng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k 178 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK 178 (893)
T ss_pred ceEEECCCCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc
Confidence 446777887776654 567899999877655 566666677889999999999999999999999999999999997654
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
. -..+.+.+|.+.|...-|.
T Consensus 179 ~------------------------------------------------------------~~~~~l~gHkd~VvacfF~ 198 (893)
T KOG0291|consen 179 N------------------------------------------------------------LFTYALNGHKDYVVACFFG 198 (893)
T ss_pred c------------------------------------------------------------cceEeccCCCcceEEEEec
Confidence 1 1245677999999999999
Q ss_pred CCC-EEEEEECCCcEEEEECCC-----------------------Cee-----e--eE----ee-CCCCeEEEEEeecCC
Q 005646 364 KNN-YLLSASIDKTVRLWRVGN-----------------------DHC-----L--RV----FP-HSNYVTCVHFNPVDD 407 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~-----------------------~~~-----~--~~----~~-h~~~V~~v~fsp~~~ 407 (686)
.+. .|++.+.||.+.+|.... ++. . +. +. ....|++.+||+ .-
T Consensus 199 ~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t 277 (893)
T KOG0291|consen 199 ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GT 277 (893)
T ss_pred cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-Cc
Confidence 988 999999999999998761 100 0 01 11 337899999999 88
Q ss_pred CEEEEEEcCCcEEEEecCCCcEEEEecc-CCcEEEEEEccCCCEEEEEecC-CcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 408 NYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIVTAVCYRPDGQGGIVGSMM-GDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 408 ~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~V~~v~~spdg~~l~~gs~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
++|++|-..|...+|.+....++..... ..+|..++|+..|.+||.|+.. |.+-||+......++ +..+|
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl--------KQQgH 349 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL--------KQQGH 349 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee--------ecccc
Confidence 9999999999999999999998866655 4789999999999999998775 899999988766544 24567
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPA 550 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~ 550 (686)
...+++++++| |++++++|+.||.|+|||... .++|...|+.|++.+.||+|+.||+....
T Consensus 350 ~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr--- 425 (893)
T KOG0291|consen 350 SDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR--- 425 (893)
T ss_pred ccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc---
Confidence 88999999999 899999999999999999654 46677799999999999999999998765
Q ss_pred ccccccccccccccC--CcEEEecCCCC------------cCCCCCCCCcccccCCCCCccc--ccCCCccccCcccccc
Q 005646 551 HDQAKTIRSLERFTT--NASIAIPWCGL------------KCGNAEKEPQLHVSDDDSPENL--AFAPARFSLGQEYVFE 614 (686)
Q Consensus 551 ~~~~~~~~~~~~~~~--~~~v~~s~~g~------------~~~~~~~g~~l~~~~~~~~~~~--~~spd~~~~~~~~~~~ 614 (686)
..+++..-.+ -..+++.++|. .+|+..||+.+-.+.+|.+++. +|+|+ ++.+.++
T Consensus 426 -----NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~----~~~LaS~ 496 (893)
T KOG0291|consen 426 -----NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD----GSLLASG 496 (893)
T ss_pred -----eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc----cCeEEec
Confidence 2222222111 13445554443 4899999999999999998876 59999 5667789
Q ss_pred CCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 615 SFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 615 s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
|.|+++++|+.=.... . ...+.. .+....+ .++++|.-|+.+..||.|-+|.-
T Consensus 497 SWDkTVRiW~if~s~~--~---vEtl~i------~sdvl~v-sfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSG--T---VETLEI------RSDVLAV-SFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred cccceEEEEEeeccCc--e---eeeEee------ccceeEE-EEcCCCCeEEEEEecceEEEEEh
Confidence 9999999999321100 0 111111 1123333 45667999999999999999974
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.6e-32 Score=255.00 Aligned_cols=234 Identities=25% Similarity=0.447 Sum_probs=208.3
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+.+|++.|..+.|+|+|.+|||||.|..|.+|++....
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------- 80 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------- 80 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence 3578999999999999999999999999999999975432
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
+-...+++|+++|..+.|.+++ .|++++.|++|+.||++++++++.++ |..-|++++
T Consensus 81 ---------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~ 139 (338)
T KOG0265|consen 81 ---------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD 139 (338)
T ss_pred ---------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC
Confidence 2234566899999999999999 99999999999999999999999998 999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
-+..+..++.+|+.||++++||+++...+.++..+.+++++.|..++..+++|+.|+.|++||++.+.... .
T Consensus 140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~--------~ 211 (338)
T KOG0265|consen 140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY--------T 211 (338)
T ss_pred ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE--------E
Confidence 65555678889999999999999999999888889999999999999999999999999999998776543 2
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----------------------ceeEcCCCCEEEEEeCCCcE
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-----------------------VIGKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-----------------------~~~~~~dg~~l~sgs~Dg~V 538 (686)
..+|..+|+++..+| ++..+++-+.|.++++||... ..+|+|++..+..|+.|..|
T Consensus 212 lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 212 LSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV 290 (338)
T ss_pred eecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE
Confidence 567889999999999 889999999999999999642 14688899999999999999
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
++||.....
T Consensus 291 yvwd~~~r~ 299 (338)
T KOG0265|consen 291 YVWDTTSRR 299 (338)
T ss_pred EEeeccccc
Confidence 999987643
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-31 Score=276.52 Aligned_cols=260 Identities=22% Similarity=0.412 Sum_probs=222.9
Q ss_pred eecCCCccceeec-cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005646 209 VRLNEEDAMFCSK-VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (686)
Q Consensus 209 ~s~~~~~l~~g~~-d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~ 287 (686)
+...|++++.|+. -|++.||++.....- -..++|...|++++++|||+++|||++||.|+|||...+-
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsEsYV-------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf---- 383 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSESYV-------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF---- 383 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeecccee-------eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce----
Confidence 3344899988764 489999988765432 3367899999999999999999999999999999998875
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~- 366 (686)
++.+|..|+..|+.+.|+..|
T Consensus 384 ----------------------------------------------------------C~vTFteHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 384 ----------------------------------------------------------CFVTFTEHTSGVTAVQFTARGN 405 (893)
T ss_pred ----------------------------------------------------------EEEEeccCCCceEEEEEEecCC
Confidence 456777899999999999999
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC-cEEEEecCCCcEEE-EeccCCcEEEE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVLSCHVVD-WVDIRQIVTAV 442 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg-~V~iwd~~~~~~~~-~~~~~~~V~~v 442 (686)
.|+++|.||+||.||+...++.++|. ......|++..| .+.++..|+.|. .|.+|++.+|+++. +.+|.++|.++
T Consensus 406 ~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l 484 (893)
T KOG0291|consen 406 VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL 484 (893)
T ss_pred EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee
Confidence 99999999999999999999999998 445567899988 899999999886 59999999999995 56899999999
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-----
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----- 517 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----- 517 (686)
+|+|+|..|++|+.|.+||+||+-......+. ..+...+.++.|.| +++.|+++.-||+|.+||..
T Consensus 485 ~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt--------l~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 485 SFSPDGSLLASGSWDKTVRIWDIFSSSGTVET--------LEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred EEccccCeEEeccccceEEEEEeeccCceeee--------EeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceee
Confidence 99999999999999999999998655322211 11235699999999 89999999999999999853
Q ss_pred ------------------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 ------------------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 ------------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.+++++||++|++||+...|+||++.++-
T Consensus 556 ~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 556 GSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred ccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 226777899999999999999999999875
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-30 Score=259.85 Aligned_cols=271 Identities=19% Similarity=0.323 Sum_probs=214.1
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
.+++.+|..||+|..+|.++||+..... ..+|..|+++|.+++|+..|.||++++.|+++.+||..++....
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 4455669999999999999999865432 24577799999999999999999999999999999999999888
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
.+.++..+.--+.+..+. ..+.-+.++...+..+. ...|+.++.||.++|.+|.|+|.+
T Consensus 313 ~f~~~s~~~lDVdW~~~~----~F~ts~td~~i~V~kv~-----------------~~~P~~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND----EFATSSTDGCIHVCKVG-----------------EDRPVKTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred eeeeccCCccceEEecCc----eEeecCCCceEEEEEec-----------------CCCcceeeecccCceEEEEECCCC
Confidence 888776652222221111 00001111111111111 126889999999999999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec--------CCCEEEEEEcCCcEEEEecCCCcEE-EEecc
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV--------DDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~--------~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~ 435 (686)
+|+++|.|+|++||.+....+...+. |...|..+.|+|. .+..+++++.|++|++||+..+.++ .+..|
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH 451 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH 451 (524)
T ss_pred ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence 99999999999999999999988888 9999999999983 3468999999999999999999887 45599
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
..+|.+++|+|+|+++|+|+.||.|.+|++.++++... ....+.|..++|+. ++.+|..+..|+.+++.|
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s---------~~~~~~Ifel~Wn~-~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS---------YQGTGGIFELCWNA-AGDKLGACASDGSVCVLD 521 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe---------ecCCCeEEEEEEcC-CCCEEEEEecCCCceEEE
Confidence 99999999999999999999999999999999886542 12335699999999 556777777777776665
Q ss_pred C
Q 005646 516 G 516 (686)
Q Consensus 516 ~ 516 (686)
.
T Consensus 522 l 522 (524)
T KOG0273|consen 522 L 522 (524)
T ss_pred e
Confidence 4
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=4.6e-30 Score=240.33 Aligned_cols=262 Identities=20% Similarity=0.363 Sum_probs=214.0
Q ss_pred ccCcceeee--cC-CCccceeeccceEEEEEcCC-ccccccccccCcee-cccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 202 KQGEGERVR--LN-EEDAMFCSKVQRVKVYHCKK-RSKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 202 ~~~~~~~~s--~~-~~~l~~g~~d~~v~vw~~~~-~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
|.+.+-.+. +. |..+++++.|+.|+||+... ..... ...+ .+|+..|+.++|+|.|+|||+|+.|.++.|
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~c-----k~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTC-----KTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEE-----EEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 444444444 43 44799999999999998773 22111 1122 379999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|.-..++- +.+..+.||..+
T Consensus 88 w~k~~~ef------------------------------------------------------------ecv~~lEGHEnE 107 (312)
T KOG0645|consen 88 WKKEDGEF------------------------------------------------------------ECVATLEGHENE 107 (312)
T ss_pred eecCCCce------------------------------------------------------------eEEeeeeccccc
Confidence 98654430 356788999999
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCC---eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC---c
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGND---HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC---H 428 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~---~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~---~ 428 (686)
|.+++|+++| +||+++.|+.|-||.+..+ .|+..++ |...|..+.|+| ...+|++++.|.+|++|+-... .
T Consensus 108 VK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~ 186 (312)
T KOG0645|consen 108 VKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWE 186 (312)
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCee
Confidence 9999999999 9999999999999999754 5777787 999999999999 9999999999999999987732 2
Q ss_pred EE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 429 VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 429 ~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
++ .+.+|...|.+++|+|.|..|++++.|++++||-....- ...|..+++.+.|. ...|++++.
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------~~~~sr~~Y~v~W~---~~~IaS~gg 251 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------SGMHSRALYDVPWD---NGVIASGGG 251 (312)
T ss_pred EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------chhcccceEeeeec---ccceEeccC
Confidence 33 566777899999999999999999999999999865221 23355779999998 368999999
Q ss_pred CCcEEEEeC----------------------CcceeEcCC-CCEEEEEeCCCcEEEEeCC
Q 005646 508 DSQVRILQG----------------------PNVIGKYKD-GKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 508 D~~I~iwd~----------------------~~~~~~~~d-g~~l~sgs~Dg~V~iWd~~ 544 (686)
|+.|+++.. .+.+++.|. ..+|++|+.||.|++|.+.
T Consensus 252 D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 252 DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999999952 245788884 7899999999999999875
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=6.4e-31 Score=249.40 Aligned_cols=272 Identities=18% Similarity=0.296 Sum_probs=228.3
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|.+++ ..|.|+|..+++|+.|..|.+|+.....+.. -.+++|+++|..+.|.+|++.|+++|.|++|+.||
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~------~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF------WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce------eeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 456665 5688888999999999999999966544433 34679999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+++|++ ++.+++|..-|+
T Consensus 119 ~~tG~~--------------------------------------------------------------~rk~k~h~~~vN 136 (338)
T KOG0265|consen 119 AETGKR--------------------------------------------------------------IRKHKGHTSFVN 136 (338)
T ss_pred ccccee--------------------------------------------------------------eehhccccceee
Confidence 999873 455667999999
Q ss_pred EEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEecc
Q 005646 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (686)
Q Consensus 359 ~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~ 435 (686)
.+.-+.-| ++.+++.|++++|||+++..+++++...-.++++.|.. .+..+++|+.|+.|++||++..... .+.+|
T Consensus 137 s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh 215 (338)
T KOG0265|consen 137 SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGH 215 (338)
T ss_pred ecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecc
Confidence 99865556 77899999999999999999999999999999999998 8999999999999999999988766 67789
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
..+|+.+..+|+|.++.+-+.|.++++||++.............+....-.......+|+| ++..+.+++.|..+++||
T Consensus 216 ~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 216 ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWD 294 (338)
T ss_pred cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEee
Confidence 9999999999999999999999999999997543322211112222222234456778999 889999999999999999
Q ss_pred CC---------------cceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 516 GP---------------NVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 516 ~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
.. +.+.|+|...+|.+++.|.+|++=.
T Consensus 295 ~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 295 TTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 54 4588999999999999999998743
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4.5e-31 Score=256.31 Aligned_cols=284 Identities=21% Similarity=0.397 Sum_probs=243.6
Q ss_pred HHHHHHhHHhhcccceeeecccCcceeeecCCC--ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEe
Q 005646 182 AERVKKRWFSRLRSLACVVDKQGEGERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFS 259 (686)
Q Consensus 182 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs 259 (686)
.++....|..+...+.+...+...+.++-+.+. .+++++.|.+|++||+.+... ...++||...|.+|+|+
T Consensus 87 ~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-------e~~LrGHt~sv~di~~~ 159 (406)
T KOG0295|consen 87 SKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-------ERSLRGHTDSVFDISFD 159 (406)
T ss_pred CccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------hhhhhccccceeEEEEe
Confidence 344456677776666666677777777666665 566777899999999876544 25688999999999999
Q ss_pred eCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcc
Q 005646 260 PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV 339 (686)
Q Consensus 260 pdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (686)
..|++|||++.|=.+++||..+..
T Consensus 160 a~Gk~l~tcSsDl~~~LWd~~~~~-------------------------------------------------------- 183 (406)
T KOG0295|consen 160 ASGKYLATCSSDLSAKLWDFDTFF-------------------------------------------------------- 183 (406)
T ss_pred cCccEEEecCCccchhheeHHHHH--------------------------------------------------------
Confidence 999999999999999999987632
Q ss_pred ccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCC
Q 005646 340 FRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDG 417 (686)
Q Consensus 340 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg 417 (686)
..+..+.+|...|.++.|-|.| ++++++.|.+|+.|++.++-|+++|. |...|..++.+. |+.++++++.|.
T Consensus 184 -----~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dq 257 (406)
T KOG0295|consen 184 -----RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQ 257 (406)
T ss_pred -----HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCc
Confidence 2455667899999999999999 99999999999999999999999998 999999999998 999999999999
Q ss_pred cEEEEecCCCcEE-EEeccCCcEEEEEEccC---------------CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 418 KVRIWAVLSCHVV-DWVDIRQIVTAVCYRPD---------------GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 418 ~V~iwd~~~~~~~-~~~~~~~~V~~v~~spd---------------g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
+|++|-+.++++. .+..|..+|.+++|.|. ++++.+++.|++|++||+.++.+.+.
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t-------- 329 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT-------- 329 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE--------
Confidence 9999999999766 56678889999999762 35899999999999999999987653
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..+|...|.+++|+| .+++|+++..|+++++||..+. +.|..+..+++||+-|.++++|..
T Consensus 330 L~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 456889999999999 8999999999999999997643 456668889999999999999974
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=240.35 Aligned_cols=271 Identities=22% Similarity=0.361 Sum_probs=210.7
Q ss_pred CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccc
Q 005646 263 QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI 342 (686)
Q Consensus 263 ~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (686)
-+|+|+|.|.+||+|...+|.+...+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi------------------------------------------------------ 36 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI------------------------------------------------------ 36 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE------------------------------------------------------
Confidence 48999999999999999999865544
Q ss_pred cCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCc
Q 005646 343 LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGK 418 (686)
Q Consensus 343 ~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~ 418 (686)
+...+.|+.|...|++ .|++++ ...||+||++++. ++.+|. |...|+++.|.. +++.+++|+.||+
T Consensus 37 --------qh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt 106 (311)
T KOG0315|consen 37 --------QHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGT 106 (311)
T ss_pred --------ecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCce
Confidence 3345689999999999 555554 6789999999875 567776 999999999999 9999999999999
Q ss_pred EEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC
Q 005646 419 VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 419 V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~ 498 (686)
++|||++...+...+.+..+|+++..+|+...|++|..+|.|++||+..+.+... ........|.++...|
T Consensus 107 ~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-------liPe~~~~i~sl~v~~-- 177 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-------LIPEDDTSIQSLTVMP-- 177 (311)
T ss_pred EEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-------cCCCCCcceeeEEEcC--
Confidence 9999999988888899999999999999999999999999999999987643221 1112235688888888
Q ss_pred CCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcC
Q 005646 499 SSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKC 578 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~ 578 (686)
||.+|+.+..-|+.++|++-+.... ...+++.
T Consensus 178 --------------------------dgsml~a~nnkG~cyvW~l~~~~~~--s~l~P~~-------------------- 209 (311)
T KOG0315|consen 178 --------------------------DGSMLAAANNKGNCYVWRLLNHQTA--SELEPVH-------------------- 209 (311)
T ss_pred --------------------------CCcEEEEecCCccEEEEEccCCCcc--ccceEhh--------------------
Confidence 9999999999999999999874411 1111221
Q ss_pred CCCCCCCcccccCCCCCccc--ccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCc
Q 005646 579 GNAEKEPQLHVSDDDSPENL--AFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTT 656 (686)
Q Consensus 579 ~~~~~g~~l~~~~~~~~~~~--~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (686)
.+..|....+ .+||| +..+.+.++|+++++|+.++...+ .. ...++.++... .
T Consensus 210 ----------k~~ah~~~il~C~lSPd----~k~lat~ssdktv~iwn~~~~~kl-e~-----~l~gh~rWvWd-----c 264 (311)
T KOG0315|consen 210 ----------KFQAHNGHILRCLLSPD----VKYLATCSSDKTVKIWNTDDFFKL-EL-----VLTGHQRWVWD-----C 264 (311)
T ss_pred ----------heecccceEEEEEECCC----CcEEEeecCCceEEEEecCCceee-EE-----EeecCCceEEe-----e
Confidence 1233343433 46999 566778999999999998887311 11 12222233332 2
Q ss_pred cCCCCceEEEEecCCCeEeEEee
Q 005646 657 SSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 657 ~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
.++++|..||||+.|+++|+|..
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred eeccCccEEEecCCCCceeeccc
Confidence 37788999999999999999975
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.8e-31 Score=256.76 Aligned_cols=257 Identities=19% Similarity=0.399 Sum_probs=216.1
Q ss_pred cCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 203 ~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
...+-++.++++.+++|..|++|+|||.... .....+.||++.|.|+.|. .+.|++|+.|.+|+|||++++
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~-------~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL-------ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccH-------HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC
Confidence 3356678899999999999999999976533 3346688999999999995 569999999999999999998
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
+ ++.++-+|...|..+.|
T Consensus 268 e--------------------------------------------------------------~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 268 E--------------------------------------------------------------PLNTLIHHCEAVLHLRF 285 (499)
T ss_pred c--------------------------------------------------------------hhhHHhhhcceeEEEEE
Confidence 7 45566789999999999
Q ss_pred eCCCEEEEEECCCcEEEEECCCCeee---eEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCC
Q 005646 363 SKNNYLLSASIDKTVRLWRVGNDHCL---RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQ 437 (686)
Q Consensus 363 s~~~~L~s~s~Dg~V~iWd~~~~~~~---~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~ 437 (686)
+ +|+++++|.|.++.+||+....-+ +++. |...|+.+.| +.+++++++.|.+|++|++.+++.+ .+.+|+.
T Consensus 286 ~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gHkR 361 (499)
T KOG0281|consen 286 S-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR 361 (499)
T ss_pred e-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccceEEEecCCceEEEEeccceeeehhhhcccc
Confidence 6 469999999999999999876533 3333 9999999999 5579999999999999999999988 4557888
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.|.|+.| .|+++++|+.|.+|++||+..+.+.. ...+|..-|.++.|.. +.+++|+.||+|+|||..
T Consensus 362 GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR--------vLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 362 GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR--------VLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred cceehhc--cCeEEEecCCCceEEEEeccccHHHH--------HHhchHHhhhheeecC---ceeeeccccceEEEEecc
Confidence 8877776 68899999999999999999987653 2455677799999955 899999999999999976
Q ss_pred ccee----------------------EcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 NVIG----------------------KYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 ~~~~----------------------~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+. ..-|...|++.+.|.+|.|||+.++.
T Consensus 429 aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 429 AALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred cccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 4321 11178889999999999999998876
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=237.08 Aligned_cols=209 Identities=26% Similarity=0.455 Sum_probs=169.9
Q ss_pred cCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeecccccee
Q 005646 242 KGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (686)
Q Consensus 242 ~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (686)
..+.+++|++.|+.++|+|- |..|||||.|+.||||+...+....
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~---------------------------------- 51 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT---------------------------------- 51 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE----------------------------------
Confidence 34678899999999999998 8899999999999999987532110
Q ss_pred EEEeeccCCceEEEeCCccccccCCCeEEe-ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC--eeeeEee-CCC
Q 005646 321 LKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSN 395 (686)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~~~~~-h~~ 395 (686)
....+ .+|+..|..++|+|.| +|+++|.|.++.||.-..+ +|+.++. |.+
T Consensus 52 -------------------------ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 52 -------------------------CKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN 106 (312)
T ss_pred -------------------------EEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence 11111 3799999999999999 9999999999999987644 6788887 999
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc---EE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCC-CCee
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH---VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHL 470 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~---~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~-~~~~ 470 (686)
.|.|++|++ ++++||+++.|..|-||.+.... +. .+..|...|..+.|+|....|++++.|++|++|+-. ....
T Consensus 107 EVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW 185 (312)
T KOG0645|consen 107 EVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDW 185 (312)
T ss_pred ceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCe
Confidence 999999999 99999999999999999998543 33 456788999999999999999999999999999876 4433
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
... .....|...|.+++|.+ .|..|+++++|++|+||...
T Consensus 186 ~c~------~tl~g~~~TVW~~~F~~----------------------------~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 186 ECV------QTLDGHENTVWSLAFDN----------------------------IGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred eEE------EEecCccceEEEEEecC----------------------------CCceEEEecCCcceEeeeec
Confidence 322 22445667899999999 66667777777777777644
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=276.06 Aligned_cols=267 Identities=21% Similarity=0.388 Sum_probs=218.9
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+..|+++|..+++++.++.+++|+...... ...+++.+|...|.+++|+|+|++|++++.|++|+|||+....
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~- 236 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG- 236 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-
Confidence 3468999999999999999999998844332 1234568899999999999999999999999999999994332
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
..++++.+|...|++++|+|
T Consensus 237 ------------------------------------------------------------~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 237 ------------------------------------------------------------RNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred ------------------------------------------------------------eEEEEecCCCCceEEEEecC
Confidence 24677889999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--EE-EEeccCC--
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VV-DWVDIRQ-- 437 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~-~~~~~~~-- 437 (686)
++ ++++|+.|++|+|||+++++++..+. |.+.|++++|++ ++++|++++.|+.|+|||+.++. ++ ....+..
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA 335 (456)
T ss_pred CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC
Confidence 99 99999999999999999999999999 999999999999 99999999999999999999999 33 3334433
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
+++.++|+|++.++++++.|+.+++||+.......... .+... ...+....+++ .+..+++++.|+.|++|+..
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~----~~~~~-~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT----GHSNL-VRCIFSPTLST-GGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec----ccCCc-ceeEecccccC-CCCeEEEEeCCceEEEEeCC
Confidence 59999999999999999999999999999776543211 11111 12344455566 77888999999999999865
Q ss_pred cc----------------eeEcCCCCEEEEEe--CCCcEEEEeCC
Q 005646 518 NV----------------IGKYKDGKHIVSAG--EDSNVYMWNCI 544 (686)
Q Consensus 518 ~~----------------~~~~~dg~~l~sgs--~Dg~V~iWd~~ 544 (686)
+. +.+++..+++++++ .|+.|++|..+
T Consensus 410 s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 410 SGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 31 34566888888888 68889988764
No 29
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.9e-29 Score=262.36 Aligned_cols=416 Identities=18% Similarity=0.278 Sum_probs=289.6
Q ss_pred ccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 202 KQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 202 ~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
|+..++ .|...|..+++|+.|+.|.|||+-.... ...++||+..|+.+-|..+.++|++.|.|+.|++||+
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-------l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL 178 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-------LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDL 178 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEecccee-------eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEec
Confidence 555665 6667788999999999999999765433 2358899999999999998889999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeec------CCCCcee--eeecccc--------------------ceeEEEeeccCCc-
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVN------HLSELKP--LFMDKEK--------------------ISILKSLRRTSES- 330 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~--------------------~~~~~~~~~~~~~- 330 (686)
.+..+....-.+......+.+..+ ....+.. +.+..+. ...+.......+.
T Consensus 179 ~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~ 258 (888)
T KOG0306|consen 179 ETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRF 258 (888)
T ss_pred ccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccE
Confidence 998887766655554443332220 0000000 0000000 0000000000000
Q ss_pred ------------------------------------------------------------------------------eE
Q 005646 331 ------------------------------------------------------------------------------AC 332 (686)
Q Consensus 331 ------------------------------------------------------------------------------~~ 332 (686)
..
T Consensus 259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~l 338 (888)
T KOG0306|consen 259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTL 338 (888)
T ss_pred EEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeE
Confidence 00
Q ss_pred EEeCCc---cccccC-CC---------eEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEE
Q 005646 333 VVFPPK---VFRILE-KP---------LHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC 399 (686)
Q Consensus 333 ~~~~~~---~~~~~~-~~---------~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~ 399 (686)
+..... .+.+.. .. ..++.||...|.+++++.+..++.++..+.|++|+..+.+|++++... ++.|
T Consensus 339 v~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~ 417 (888)
T KOG0306|consen 339 VLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILA 417 (888)
T ss_pred EEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEE
Confidence 000000 000000 11 145679999999999999995555555789999999999999999865 9999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee---ee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD---AE 475 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~---~~ 475 (686)
..|.| .++++++|...|.+.+||+.....+. ...|.+.|..++.+||++.+++|+.|.+|++||..--.-... ..
T Consensus 418 ~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 418 SKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred EEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 99999 99999999999999999999988874 446899999999999999999999999999999641111000 00
Q ss_pred EEeec-cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEEEeCCCcEE
Q 005646 476 ICVHS-KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVSAGEDSNVY 539 (686)
Q Consensus 476 ~~~~~-~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs~Dg~V~ 539 (686)
+.+.. ....-...|.++.++| ++.+|+++--|++++||-+. .++..+||++.|+|||.|.+|+
T Consensus 497 lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceE
Confidence 11111 1112246799999999 89999999999999999643 3477889999999999999999
Q ss_pred EEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCC
Q 005646 540 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKG 619 (686)
Q Consensus 540 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~ 619 (686)
||-++=|... +++-.+ ..+...+.|-|+ ...|++.+-|+.
T Consensus 576 iWGLdFGDCH--------KS~fAH----------------------------dDSvm~V~F~P~----~~~FFt~gKD~k 615 (888)
T KOG0306|consen 576 IWGLDFGDCH--------KSFFAH----------------------------DDSVMSVQFLPK----THLFFTCGKDGK 615 (888)
T ss_pred Eeccccchhh--------hhhhcc----------------------------cCceeEEEEccc----ceeEEEecCcce
Confidence 9999887621 111000 112234467776 678899999999
Q ss_pred CCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 620 CATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 620 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
++-|+.++......+. + ++ ..+ -|.++ .+.|.++||+|.|-.||+|.-
T Consensus 616 vKqWDg~kFe~iq~L~---~---H~-~ev--~cLav---~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 616 VKQWDGEKFEEIQKLD---G---HH-SEV--WCLAV---SPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred EEeechhhhhhheeec---c---ch-hee--eeeEE---cCCCCeEEeccCCceeEeeec
Confidence 9999988887544431 1 11 111 14433 455999999999999999975
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=5.9e-30 Score=247.53 Aligned_cols=230 Identities=19% Similarity=0.408 Sum_probs=199.9
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+++|.+.|.|+++.|..++++||+.|++|+|||+.++++
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--------------------------------------- 185 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--------------------------------------- 185 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE---------------------------------------
Confidence 56889999999999999999999999999999999999873
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
..++.||...|..+++|+-. +|++++.|+.|+-||+...+.++.+. |-..|.|++
T Consensus 186 -----------------------kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~ 242 (460)
T KOG0285|consen 186 -----------------------KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD 242 (460)
T ss_pred -----------------------EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence 45667899999999999988 99999999999999999999999887 999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 480 (686)
.+| .-+.|++|+.|.++|+||+++...+ .+.+|..+|..+.+.|-...+++|+.|++|++||+..++-...
T Consensus 243 lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t------- 314 (460)
T KOG0285|consen 243 LHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT------- 314 (460)
T ss_pred ccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe-------
Confidence 999 8899999999999999999998766 5667999999999999888899999999999999998874321
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
...|...+.+++.+| ....+++++.| .|+-|+.+.. +... ...++++|++.|.+.+||..+
T Consensus 315 -lt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n-sD~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 315 -LTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN-SDGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred -eecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhccccccceeeeeeec-cCceEEEcCCceEEEEEecCc
Confidence 234667899999999 66677777666 5778876532 2222 456889999999999999998
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
+.
T Consensus 391 g~ 392 (460)
T KOG0285|consen 391 GH 392 (460)
T ss_pred Cc
Confidence 76
No 31
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=231.25 Aligned_cols=228 Identities=27% Similarity=0.475 Sum_probs=199.2
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+..|+++|..+.|+-||+|.+|+|.|++|++|+...+.
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------------------- 50 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------------------- 50 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc----------------------------------------
Confidence 4577899999999999999999999999999999987765
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
.++++.+|..+|.+++.+.++ .+++|+.|+.|.+||+.+|+.++.|. |.+.|+.++
T Consensus 51 ----------------------liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 51 ----------------------LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVR 108 (307)
T ss_pred ----------------------eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEE
Confidence 467778999999999999998 99999999999999999999999998 999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCc--EEE-EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCH--VVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~-~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
|+. +...+++|+.|.+||+||.++.. .++ +......|.++..+ +..|++|+.||++|.||++.+.+..
T Consensus 109 fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s------ 179 (307)
T KOG0316|consen 109 FNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS------ 179 (307)
T ss_pred ecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh------
Confidence 998 89999999999999999998764 333 33456778888775 5689999999999999999887642
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----------------eeEcCCCCEEEEEeCCCcEEEE
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-----------------IGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-----------------~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
..-..+|+++.|++ +++.+++++-|+++|+.|-.+. .++.....++++|++||.|++|
T Consensus 180 ----Dy~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 180 ----DYFGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred ----hhcCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence 22346799999999 8999999999999999996542 3455577899999999999999
Q ss_pred eCCCCC
Q 005646 542 NCIGHE 547 (686)
Q Consensus 542 d~~~~~ 547 (686)
|+.+..
T Consensus 255 dLvd~~ 260 (307)
T KOG0316|consen 255 DLVDET 260 (307)
T ss_pred Eeccce
Confidence 998865
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=9.2e-29 Score=289.34 Aligned_cols=259 Identities=19% Similarity=0.343 Sum_probs=205.3
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEe
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFT 301 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~ 301 (686)
+|.+++|+...... ........+..|.+.|++++|+|+|++|||||.|+.|+||++........ ..
T Consensus 457 ~gl~~~~~~~~~~~--~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~----------- 522 (793)
T PLN00181 457 EGLCKYLSFSKLRV--KADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DI----------- 522 (793)
T ss_pred hhhhhhhcccceEE--EEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-cc-----------
Confidence 56678887654322 22233345677999999999999999999999999999999754210000 00
Q ss_pred ecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC-C-EEEEEECCCcEEE
Q 005646 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTVRL 379 (686)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~-~L~s~s~Dg~V~i 379 (686)
..+...+. +...|.+++|++. + +|++++.|++|++
T Consensus 523 ------------------------------------------~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 523 ------------------------------------------HYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred ------------------------------------------ccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 01222233 3457899999885 4 9999999999999
Q ss_pred EECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEc-cCCCEEEEEecC
Q 005646 380 WRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR-PDGQGGIVGSMM 457 (686)
Q Consensus 380 Wd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~s-pdg~~l~~gs~d 457 (686)
||+.+++.+..+. |...|++++|+|.++.+|++|+.||+|++||++++..+....+...+.++.|+ ++|.+|++|+.|
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCC
Confidence 9999999888887 99999999999867899999999999999999999887666667789999995 579999999999
Q ss_pred CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------------------
Q 005646 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------------------- 517 (686)
Q Consensus 458 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-------------------- 517 (686)
|.|++||+++.+.... ...+|...|+.+.|. ++..+++++.|+.|++||..
T Consensus 640 g~I~iwD~~~~~~~~~-------~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 640 HKVYYYDLRNPKLPLC-------TMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred CeEEEEECCCCCccce-------EecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 9999999986542110 123577889999996 46789999999999999964
Q ss_pred -cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 518 -NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 518 -~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+.+++++++++|++|+.|+.|+||+...+
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 12567889999999999999999997654
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=9.6e-30 Score=246.06 Aligned_cols=264 Identities=18% Similarity=0.282 Sum_probs=226.3
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|.+-+ .++.+...++++|+.|++|+|||+..... ..++.||...|..+++|+--.||++++.|+.|+.||
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-------kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-------KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-------EEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 444444 45556668999999999999999876543 346889999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+...+ .++.+.||-..|.
T Consensus 222 Le~nk--------------------------------------------------------------vIR~YhGHlS~V~ 239 (460)
T KOG0285|consen 222 LEYNK--------------------------------------------------------------VIRHYHGHLSGVY 239 (460)
T ss_pred chhhh--------------------------------------------------------------hHHHhccccceeE
Confidence 98765 4667789999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEecc
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~ 435 (686)
+|+.+|.- .|++|+.|.++||||+++...+.++. |..+|..+.+.| .+..+++|+.|++|++||++.++.. ....|
T Consensus 240 ~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 240 CLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred EEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 99999987 99999999999999999999999998 999999999999 6778999999999999999998865 67778
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+..|.+++.+|....+|+++.| .|+-|++..+..... ...|..-|+.+.... ...+++|+..|.|.+||
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n--------lsgh~~iintl~~ns--D~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN--------LSGHNAIINTLSVNS--DGVLVSGGDNGSIMFWD 387 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhc--------cccccceeeeeeecc--CceEEEcCCceEEEEEe
Confidence 8999999999999999988776 599999988765432 345667788888876 36899999999999999
Q ss_pred CCc-----------------------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 516 GPN-----------------------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 516 ~~~-----------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
..+ ..+|.+.|..|+||..|.+|++|.-+.
T Consensus 388 wksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 388 WKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 543 245666899999999999999998655
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6e-29 Score=255.89 Aligned_cols=261 Identities=21% Similarity=0.310 Sum_probs=224.5
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
...+.|...+++++-.+|.|.||+++++.. .+.+.--..+|++.+|-+-.+++++|+.|..||||+..+++
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyetqtm-------VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-- 88 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYETQTM-------VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-- 88 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEeccccee-------eeeeeecccchhhheeeeccceEEEecCCceEEEEecccce--
Confidence 356677778999999999999999987654 34466678899999999999999999999999999999886
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
.++.|.+|.+.|.+++.+|.
T Consensus 89 ------------------------------------------------------------kV~~FeAH~DyIR~iavHPt 108 (794)
T KOG0276|consen 89 ------------------------------------------------------------KVKTFEAHSDYIRSIAVHPT 108 (794)
T ss_pred ------------------------------------------------------------eeEEeeccccceeeeeecCC
Confidence 46778899999999999999
Q ss_pred C-EEEEEECCCcEEEEECCCC-eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEE
Q 005646 366 N-YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTA 441 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~ 441 (686)
. +++|+|.|-+|++||.+.. .|.++|. |..+|.+++|+|.|.+.|++++.|++|++|.+....+. ++.+|...|++
T Consensus 109 ~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~ 188 (794)
T KOG0276|consen 109 LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNC 188 (794)
T ss_pred CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcce
Confidence 9 9999999999999999866 6888888 99999999999999999999999999999999887655 67789999999
Q ss_pred EEEccCC--CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 442 VCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 442 v~~spdg--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
++|-+-| .+|++|+.|.+++|||..+..+.+. ..+|...|..+.|+| .-.++++|+.||++|||+..+.
T Consensus 189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T--------LeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT--------LEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred EEeccCCCcceEEecCCCceEEEeecchHHHHHH--------hhcccccceEEEecC-CCcEEEEecCCccEEEecCcce
Confidence 9998844 6999999999999999998876542 456778899999999 7889999999999999986542
Q ss_pred ---------------eeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 520 ---------------IGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 520 ---------------~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
++..+.++.++.|.+.|.|.| ++-.
T Consensus 260 ~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgr 299 (794)
T KOG0276|consen 260 KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGR 299 (794)
T ss_pred ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccC
Confidence 445567777888887776654 4433
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.9e-29 Score=261.12 Aligned_cols=430 Identities=18% Similarity=0.240 Sum_probs=290.8
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..++.+|+.|++...+. |.+-|.......+. ..-..-...|++++..||+++|++++..+.+++|++.+++.+.
T Consensus 25 ~~~s~nG~~L~t~~~d~-Vi~idv~t~~~~l~-----s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~ir 98 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-VIIIDVATGSIALP-----SGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIR 98 (775)
T ss_pred eeECCCCCEEEEecCce-EEEEEccCCceecc-----cCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhH
Confidence 67889999988877654 44555544332111 1112345689999999999999999999999999999999998
Q ss_pred eecc-CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 287 EVDI-PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 287 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
.++. ++.++..+.|.+.. ..... ++.+....+|+... +...+.|+||.+.|..+.|+|+
T Consensus 99 swKa~He~Pvi~ma~~~~g---~LlAt-------------ggaD~~v~VWdi~~----~~~th~fkG~gGvVssl~F~~~ 158 (775)
T KOG0319|consen 99 SWKAIHEAPVITMAFDPTG---TLLAT-------------GGADGRVKVWDIKN----GYCTHSFKGHGGVVSSLLFHPH 158 (775)
T ss_pred hHhhccCCCeEEEEEcCCC---ceEEe-------------ccccceEEEEEeeC----CEEEEEecCCCceEEEEEeCCc
Confidence 8887 55444444443322 11111 22233333333321 2578999999999999999998
Q ss_pred C---EEEEEECCCcEEEEECCCCe-eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEE
Q 005646 366 N---YLLSASIDKTVRLWRVGNDH-CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT 440 (686)
Q Consensus 366 ~---~L~s~s~Dg~V~iWd~~~~~-~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~ 440 (686)
- .|++|..|++|++||+.... |+.++. |.+.|++++|.+ ++..+++++.|..+.|||+.+.+..........+.
T Consensus 159 ~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E 237 (775)
T KOG0319|consen 159 WNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLE 237 (775)
T ss_pred cchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhhee
Confidence 6 78999999999999999554 566666 999999999999 89999999999999999998888888888888899
Q ss_pred EEEEccC-----CCEEEEEecCCcEEEEeCCCCeeeeee-----------------------------------eEEeec
Q 005646 441 AVCYRPD-----GQGGIVGSMMGDCRFYNVSDNHLELDA-----------------------------------EICVHS 480 (686)
Q Consensus 441 ~v~~spd-----g~~l~~gs~dg~i~iwd~~~~~~~~~~-----------------------------------~~~~~~ 480 (686)
++.+-++ |.++++.+.+|.+++||..++++.... .+.+..
T Consensus 238 ~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k 317 (775)
T KOG0319|consen 238 SVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK 317 (775)
T ss_pred eEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh
Confidence 9999887 779999999999999998765432110 111111
Q ss_pred cccCCCCCeEEEEEeCCCCC-----------------------------------------eEEEEeCCCcEEEEeCC--
Q 005646 481 KKKAPCKRITGFQFLPQDSS-----------------------------------------KVMVSCADSQVRILQGP-- 517 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~-----------------------------------------~l~~~s~D~~I~iwd~~-- 517 (686)
...+....|.++.|...+.+ +|++++.|.++++|...
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence 12223344555554433334 45555555555555321
Q ss_pred -----------------cceeEcC-CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccc-cccC-CcEEEecCCCC-
Q 005646 518 -----------------NVIGKYK-DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE-RFTT-NASIAIPWCGL- 576 (686)
Q Consensus 518 -----------------~~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~s~~g~- 576 (686)
..++++. ...+|+++|.|+++++|++...++.........+.-+ .+.. ...++++++-.
T Consensus 398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL 477 (775)
T KOG0319|consen 398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL 477 (775)
T ss_pred cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence 1122222 2356666677777777766653221111111111111 1222 45666666522
Q ss_pred ----------cCCCCCCCCcccccCCCCCcc--cccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhh
Q 005646 577 ----------KCGNAEKEPQLHVSDDDSPEN--LAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQ 644 (686)
Q Consensus 577 ----------~~~~~~~g~~l~~~~~~~~~~--~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~ 644 (686)
++|+.+....+.++.+|...+ +.|+|. .+.+.+.|+|+++++|+.++...+.++. ++..+
T Consensus 478 iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~----dq~laT~SgD~TvKIW~is~fSClkT~e---GH~~a- 549 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN----DQLLATCSGDKTVKIWSISTFSCLKTFE---GHTSA- 549 (775)
T ss_pred EEecccccceeeecccCceEEEEeeCCccceEEEEeccc----cceeEeccCCceEEEEEeccceeeeeec---Cccce-
Confidence 699999999999999998665 467886 4566689999999999999888766652 11111
Q ss_pred HHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 645 YKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 645 ~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
... +.+-..|..|++||.||-||+|..
T Consensus 550 -------Vlr-a~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 550 -------VLR-ASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred -------eEe-eeeeeCCcEEEeccCCCcEEEEec
Confidence 111 234556999999999999999974
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.9e-29 Score=270.60 Aligned_cols=291 Identities=29% Similarity=0.457 Sum_probs=223.2
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
|...|.++.|+++|++|++++.|+.+++|+......
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------------------------- 193 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------------------------- 193 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------------------------
Confidence 478999999999999999999999999999855431
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEEC-CCCeeeeEee-CCCCeEEEEEeec
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV-GNDHCLRVFP-HSNYVTCVHFNPV 405 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~-~~~~~~~~~~-h~~~V~~v~fsp~ 405 (686)
...+.+.+|...|.+++|+|++ ++++++.|++|+|||+ ..+.+++++. |..+|++++|+|
T Consensus 194 ----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p- 256 (456)
T KOG0266|consen 194 ----------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP- 256 (456)
T ss_pred ----------------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-
Confidence 0234457899999999999999 9999999999999999 5668999997 999999999999
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 484 (686)
.++++++|+.|++|||||+++++++ .+..|...|++++|+++|++|++++.||.|+|||+.++.... .........
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~~~~~~ 333 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC---LKLLSGAEN 333 (456)
T ss_pred CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee---eecccCCCC
Confidence 7799999999999999999998887 566788999999999999999999999999999999887430 001111122
Q ss_pred CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccccccccc
Q 005646 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFT 564 (686)
Q Consensus 485 ~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~ 564 (686)
.. .++.++|+| ++++|++++.|+.+++||+..+... ..+..+.
T Consensus 334 ~~-~~~~~~fsp----------------------------~~~~ll~~~~d~~~~~w~l~~~~~~--------~~~~~~~ 376 (456)
T KOG0266|consen 334 SA-PVTSVQFSP----------------------------NGKYLLSASLDRTLKLWDLRSGKSV--------GTYTGHS 376 (456)
T ss_pred CC-ceeEEEECC----------------------------CCcEEEEecCCCeEEEEEccCCcce--------eeecccC
Confidence 22 689999999 9999999999999999999987622 1111111
Q ss_pred CCcEEEecCCCCcCCCCCCCCcccccCCCCCccc-ccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchh
Q 005646 565 TNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENL-AFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKS 643 (686)
Q Consensus 565 ~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~-~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 643 (686)
. ... .|++.....+.++++.+.|..+..|+.+.......+. +....
T Consensus 377 ~------------------------------~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~---~h~~~ 423 (456)
T KOG0266|consen 377 N------------------------------LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE---GHSKA 423 (456)
T ss_pred C------------------------------cceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc---CCCCC
Confidence 1 001 1233333447788889999999999977644322221 00000
Q ss_pred hHHhhhcccccCccCCCCceEEEEec--CCCeEeEEeecC
Q 005646 644 QYKFLKSSCLCTTSSHAWGLVIVTAG--WDGRIRSFLNYG 681 (686)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~g~~ivT~~--~DG~Ir~w~~~g 681 (686)
.......|+...+|++++ .|+.||+|..-+
T Consensus 424 --------~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 424 --------AVSDLSSHPTENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred --------ceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence 111123455578999998 799999998643
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=5.7e-29 Score=241.92 Aligned_cols=306 Identities=15% Similarity=0.191 Sum_probs=246.6
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.|..|+.+|.+++.+|+.++++|||.|....||++.++.
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---------------------------------------- 97 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---------------------------------------- 97 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----------------------------------------
Confidence 4577899999999999999999999999999999998876
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
...++.+|...|+++.|+.+| +||||.++|.|+||+..++.....+. .-..+.-+.
T Consensus 98 ----------------------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 98 ----------------------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred ----------------------ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence 345667899999999999999 99999999999999999999888876 667888999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCC-CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLS-CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 480 (686)
|+| ...+|+.|+.||.|.+|.+.+ +.+..+.+|..++++-.|.|||+.++++..||+|++||+.++.+....
T Consensus 156 WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~------ 228 (399)
T KOG0296|consen 156 WHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKI------ 228 (399)
T ss_pred ecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEe------
Confidence 999 999999999999999999999 555677789999999999999999999999999999999998754322
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc--------------------------eeEcCCCCEEEEEeC
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--------------------------IGKYKDGKHIVSAGE 534 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~--------------------------~~~~~dg~~l~sgs~ 534 (686)
........+++.++. .+..++.+..++.+++.+..+. +.++..=.+.|+|+-
T Consensus 229 -~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v 306 (399)
T KOG0296|consen 229 -TQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV 306 (399)
T ss_pred -cccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence 222234567777777 7788888888888887764322 223336678999999
Q ss_pred CCcEEEEeCCCCCCCCcc-ccccccccccccCCcEEEecCCCC-cCCCCCCCCcccccCCCCCccccc--CCCccccCcc
Q 005646 535 DSNVYMWNCIGHEEPAHD-QAKTIRSLERFTTNASIAIPWCGL-KCGNAEKEPQLHVSDDDSPENLAF--APARFSLGQE 610 (686)
Q Consensus 535 Dg~V~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~s~~g~-~~~~~~~g~~l~~~~~~~~~~~~~--spd~~~~~~~ 610 (686)
||+|.|||+......... +...+..+.-..+....+-.-+|. +.||..+|+.+....+|...++.| +|+ ...
T Consensus 307 dG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~----~~~ 382 (399)
T KOG0296|consen 307 DGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ----KRL 382 (399)
T ss_pred cceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC----CcE
Confidence 999999999876522211 122233332222233444444554 799999999999999999888866 887 778
Q ss_pred ccccCCCCCCCCCC
Q 005646 611 YVFESFPKGCATWP 624 (686)
Q Consensus 611 ~~~~s~d~~~~~W~ 624 (686)
+++.+.|+++++..
T Consensus 383 vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 383 VVTVSDDNTALVFE 396 (399)
T ss_pred EEEecCCCeEEEEe
Confidence 88999999887765
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2e-28 Score=286.43 Aligned_cols=270 Identities=15% Similarity=0.228 Sum_probs=216.3
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccc-cccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSA-LYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+|+++++++++|+.|+.|+||+.......... .+....+. +...|.+++|++ ++.+||+++.||+|+|||+.+++
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~- 566 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ- 566 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-
Confidence 456678889999999999999997542111100 01112233 456899999987 47899999999999999998765
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
.+..+.+|.+.|++++|+|
T Consensus 567 -------------------------------------------------------------~~~~~~~H~~~V~~l~~~p 585 (793)
T PLN00181 567 -------------------------------------------------------------LVTEMKEHEKRVWSIDYSS 585 (793)
T ss_pred -------------------------------------------------------------EEEEecCCCCCEEEEEEcC
Confidence 3445668999999999997
Q ss_pred -CC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--EEEEeccCCcEE
Q 005646 365 -NN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVT 440 (686)
Q Consensus 365 -~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~ 440 (686)
++ +|++|+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.||.|++||+++.. ...+..|...|+
T Consensus 586 ~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~ 665 (793)
T PLN00181 586 ADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665 (793)
T ss_pred CCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE
Confidence 55 99999999999999999999998888778899999976589999999999999999998765 345668889999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--- 517 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--- 517 (686)
++.|. ++.+|++++.|++|++||+......... .......+|...+..+.|+| ++.+|++++.|+.|++|+..
T Consensus 666 ~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~--~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 666 YVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINE--TPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEEEe-CCCEEEEEECCCEEEEEeCCCCccccCC--cceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCC
Confidence 99997 7889999999999999999753211000 00112345677899999999 67899999999999999842
Q ss_pred -------------------------cceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 518 -------------------------NVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 518 -------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..++|++++.+|++|+.||.|+||++
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 23678899999999999999999996
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=7.9e-30 Score=270.66 Aligned_cols=200 Identities=26% Similarity=0.486 Sum_probs=183.1
Q ss_pred eecccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 199 VVDKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 199 ~~~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
...|.+.| ++|+++.++|++++.|.+|++|.+..... ...++||..+|+++.|+|.|-|+||||.|++.++
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-------~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-------LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeeccccee-------EEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 45677766 77888899999999999999998766543 3457899999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|..... +|++.+.||.+.
T Consensus 520 Ws~d~~--------------------------------------------------------------~PlRifaghlsD 537 (707)
T KOG0263|consen 520 WSTDHN--------------------------------------------------------------KPLRIFAGHLSD 537 (707)
T ss_pred eecccC--------------------------------------------------------------Cchhhhcccccc
Confidence 987653 477888999999
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEe
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWV 433 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~ 433 (686)
|.|++|+|+. ++++||.|++||+||+.+|..++.|. |.++|++++|+| +|.+|++|+.||.|.|||+.++..+ .+.
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhhh
Confidence 9999999999 99999999999999999999999998 999999999999 9999999999999999999998776 778
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
+|.+.|.++.|+.||..||+|+.|.+|++||+...
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 89999999999999999999999999999998653
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.9e-28 Score=245.21 Aligned_cols=274 Identities=19% Similarity=0.290 Sum_probs=221.5
Q ss_pred cccCcc--eeeecCCC-ccceeeccceEEEEEcCCc-ccccc--ccccCceecc----cCCceEEEEEeeCCCEEEEEeC
Q 005646 201 DKQGEG--ERVRLNEE-DAMFCSKVQRVKVYHCKKR-SKELS--ALYKGQEIQA----HDGSILTMKFSPDGQYLASAGD 270 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~-~l~~g~~d~~v~vw~~~~~-~~~~~--~~~~~~~l~~----H~~~I~~l~fspdg~~Lasgs~ 270 (686)
.|..++ +++++..+ .+++|+.+-..++|++... ..... .+.....+-+ -...|++++|+.+|.+||||+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 345555 44555555 7889999999999998641 11111 1111111112 2357999999999999999999
Q ss_pred CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 271 Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
||.++||+.... .+.+|
T Consensus 256 ~G~~riw~~~G~---------------------------------------------------------------l~~tl 272 (524)
T KOG0273|consen 256 DGEARIWNKDGN---------------------------------------------------------------LISTL 272 (524)
T ss_pred CcEEEEEecCch---------------------------------------------------------------hhhhh
Confidence 999999997543 34556
Q ss_pred ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
..|.++|.+|.|+..| +|++++.|+++.|||..++.+.+.|. |..+-..|.|- +..-|++++.|+.|+++.+....
T Consensus 273 ~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~ 350 (524)
T KOG0273|consen 273 GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR 350 (524)
T ss_pred hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCC
Confidence 6799999999999999 99999999999999999999999998 77776788886 57789999999999999997655
Q ss_pred E-EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC--------CC
Q 005646 429 V-VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--------DS 499 (686)
Q Consensus 429 ~-~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~--------~~ 499 (686)
. ..+.+|++.|.++.|.|.|..|++++.|++++||++....... ....|...|+.+.|+|. .+
T Consensus 351 P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~--------~l~~Hskei~t~~wsp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 351 PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH--------DLQAHSKEIYTIKWSPTGPVTSNPNMN 422 (524)
T ss_pred cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh--------hhhhhccceeeEeecCCCCccCCCcCC
Confidence 4 4788899999999999999999999999999999986654322 24567788999999884 34
Q ss_pred CeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 500 SKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+++++.|++|++||... .++|+|+|+|||+|+.||.|.||+..+++
T Consensus 423 ~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred ceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 5899999999999999653 36789999999999999999999999876
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.5e-28 Score=252.74 Aligned_cols=374 Identities=17% Similarity=0.258 Sum_probs=275.1
Q ss_pred cceeeecCCC--ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 205 EGERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~~--~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
++++....++ .+|.|..||.|+||+...... .-++.||+.+|++|.|...|..|||||.|+.|.+||+...
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-------~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E 139 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-------LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE 139 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCce-------eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc
Confidence 4555554444 569999999999998764422 2457889999999999999999999999999999998653
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
. -...++||...|+.+-|
T Consensus 140 ~--------------------------------------------------------------Gl~rL~GHkd~iT~~~F 157 (888)
T KOG0306|consen 140 E--------------------------------------------------------------GLFRLRGHKDSITQALF 157 (888)
T ss_pred e--------------------------------------------------------------eeEEeecchHHHhHHhc
Confidence 2 34667899999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC--------------
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-------------- 426 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-------------- 426 (686)
..+. +|++.+.|++|++||+.+..|..+.- |.+.|+.+++.+ +.+++++.|+.+++|++..
T Consensus 158 ~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~ 234 (888)
T KOG0306|consen 158 LNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTK 234 (888)
T ss_pred cCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceee
Confidence 8855 99999999999999999999998877 999999999975 8899999999999998810
Q ss_pred --------------------------------------------------------------------------------
Q 005646 427 -------------------------------------------------------------------------------- 426 (686)
Q Consensus 427 -------------------------------------------------------------------------------- 426 (686)
T Consensus 235 ~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~ 314 (888)
T KOG0306|consen 235 LRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRL 314 (888)
T ss_pred ccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHH
Confidence
Q ss_pred ------------------C-c------------------------------EEEEeccCCcEEEEEEccCCCEEEEEecC
Q 005646 427 ------------------C-H------------------------------VVDWVDIRQIVTAVCYRPDGQGGIVGSMM 457 (686)
Q Consensus 427 ------------------~-~------------------------------~~~~~~~~~~V~~v~~spdg~~l~~gs~d 457 (686)
+ . .+...+|+..|.+++++.+...+++| ..
T Consensus 315 ~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~ 393 (888)
T KOG0306|consen 315 ETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AG 393 (888)
T ss_pred HheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CC
Confidence 0 0 01122455668889999887666665 56
Q ss_pred CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeE
Q 005646 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGK 522 (686)
Q Consensus 458 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~ 522 (686)
+.++||+..+.++.... ....+.+..|.| +..++++|...|.+.++|... .++.
T Consensus 394 ~SikiWn~~t~kciRTi----------~~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTI----------TCGYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred CcEEEEEccCcceeEEe----------ccccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 78999999988776432 224688999999 789999999999999999653 2678
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCC-----CccccccccccccccCCcEEEecCCCCc----CCC-------CCCCCc
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHEEP-----AHDQAKTIRSLERFTTNASIAIPWCGLK----CGN-------AEKEPQ 586 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~s~~g~~----~~~-------~~~g~~ 586 (686)
.||++.++|||.|.+|++|++.--... .....+..++++--.....+.++++|.- .-| ..+=..
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF 542 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF 542 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence 899999999999999999998643320 1122233445544444678888888762 111 111122
Q ss_pred ccccCCCCCcccc--cCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceE
Q 005646 587 LHVSDDDSPENLA--FAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLV 664 (686)
Q Consensus 587 l~~~~~~~~~~~~--~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 664 (686)
...+=+|.-++++ .||| +..++++++|+++++|-..-..+-.++. ++. ....++ .+-+....
T Consensus 543 flsLYGHkLPV~smDIS~D----SklivTgSADKnVKiWGLdFGDCHKS~f---AHd--------DSvm~V-~F~P~~~~ 606 (888)
T KOG0306|consen 543 FLSLYGHKLPVLSMDISPD----SKLIVTGSADKNVKIWGLDFGDCHKSFF---AHD--------DSVMSV-QFLPKTHL 606 (888)
T ss_pred eeeecccccceeEEeccCC----cCeEEeccCCCceEEeccccchhhhhhh---ccc--------CceeEE-EEccccee
Confidence 2233367766665 4999 6788899999999999965544222110 000 011122 22234679
Q ss_pred EEEecCCCeEeEEe
Q 005646 665 IVTAGWDGRIRSFL 678 (686)
Q Consensus 665 ivT~~~DG~Ir~w~ 678 (686)
+.|+|.||.||-|.
T Consensus 607 FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 607 FFTCGKDGKVKQWD 620 (888)
T ss_pred EEEecCcceEEeec
Confidence 99999999999993
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.1e-29 Score=241.03 Aligned_cols=234 Identities=20% Similarity=0.349 Sum_probs=206.2
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+.+|..+|+.+-|+|+-..++++++|++|++||..+++
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~--------------------------------------- 141 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE--------------------------------------- 141 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh---------------------------------------
Confidence 35677899999999999999999999999999999999987
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCC-CeeeeEee-CCCCeEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHCLRVFP-HSNYVTC 399 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~-~~~~~~~~-h~~~V~~ 399 (686)
....++||...|.+++|+..| +|++++.|-.+++||..+ .+|++.+. |...|.+
T Consensus 142 -----------------------~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~ 198 (406)
T KOG0295|consen 142 -----------------------LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSS 198 (406)
T ss_pred -----------------------hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceee
Confidence 345678999999999999999 999999999999999987 56666655 9999999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
++|-| .++++++++.|.+|++|++.++.++ .+.+|.+.|..+..+.||..+++++.|.++++|-+.+..+...
T Consensus 199 V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~----- 272 (406)
T KOG0295|consen 199 VFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE----- 272 (406)
T ss_pred EEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh-----
Confidence 99999 8999999999999999999999888 5667889999999999999999999999999999988754331
Q ss_pred eccccCCCCCeEEEEEeCC--------------CCCeEEEEeCCCcEEEEeCCcc---------------eeEcCCCCEE
Q 005646 479 HSKKKAPCKRITGFQFLPQ--------------DSSKVMVSCADSQVRILQGPNV---------------IGKYKDGKHI 529 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~--------------~~~~l~~~s~D~~I~iwd~~~~---------------~~~~~dg~~l 529 (686)
...|..+|.+++|.|. .+..+.+++.|++|++||+.++ ++|+|.|+||
T Consensus 273 ---lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 273 ---LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred ---hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEE
Confidence 3446677888888763 2358999999999999998754 6788999999
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 005646 530 VSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 530 ~sgs~Dg~V~iWd~~~~~ 547 (686)
+++.+|+++++||+++..
T Consensus 350 ~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 350 LSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred EEEecCCcEEEEEeccce
Confidence 999999999999999876
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6e-29 Score=244.62 Aligned_cols=273 Identities=18% Similarity=0.269 Sum_probs=224.6
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
+|..|+ ..|+.+|.+||+++.|.+..+|.+..... .....++.+|..+|..+.||||.+||++||.|..+++||
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 455565 67899999999999999999998765332 233467899999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+|.....+. .+|...+.
T Consensus 298 v~tgd~~~~y~-------------------------------------------------------------~~~~~S~~ 316 (519)
T KOG0293|consen 298 VDTGDLRHLYP-------------------------------------------------------------SGLGFSVS 316 (519)
T ss_pred CCcchhhhhcc-------------------------------------------------------------cCcCCCcc
Confidence 99987443322 23567889
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
+++|.||| .+++|+.|+++..||++... +.... ....|.+++..+ |+.++++...|..|++++..+.........
T Consensus 317 sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise 394 (519)
T KOG0293|consen 317 SCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISE 394 (519)
T ss_pred eeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccc
Confidence 99999999 99999999999999997543 33333 446799999999 999999999999999999998877777888
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
..+|++++++.||+++++.-.+..+++||+..++++.. ..+++.+ .-|..-+|--.+..++++|+.|++|+||+
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k----Y~Ghkq~--~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK----YFGHKQG--HFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH----hhccccc--ceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 89999999999999999999999999999997765542 2222222 23555667776778999999999999998
Q ss_pred CC---------------cceeEcC-CCCEEEEEeCCCcEEEEeCCCC
Q 005646 516 GP---------------NVIGKYK-DGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 516 ~~---------------~~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.. +++++.| +-..+|+||+||+||||.....
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 43 4677888 6778999999999999998653
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=3.3e-27 Score=240.53 Aligned_cols=262 Identities=24% Similarity=0.449 Sum_probs=218.3
Q ss_pred ccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 202 KQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 202 ~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
|...+. .++++++.+++++.++.+++|+..... ....+..|...+..+.|+|++++|++++.||.|++|++
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 444444 455666899999999999999987543 13456789999999999999999999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+++ .+..+..|...|.+
T Consensus 81 ~~~~--------------------------------------------------------------~~~~~~~~~~~i~~ 98 (289)
T cd00200 81 ETGE--------------------------------------------------------------CVRTLTGHTSYVSS 98 (289)
T ss_pred Cccc--------------------------------------------------------------ceEEEeccCCcEEE
Confidence 7653 23445578889999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccC
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIR 436 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~ 436 (686)
+.|++++ ++++++.|+.|++||+.+++....+. |...|++++|+| ++.++++++.|+.|++||+++++.+ .+..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 177 (289)
T cd00200 99 VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177 (289)
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCc
Confidence 9999998 77777779999999999998888887 899999999999 7888888888999999999987765 444566
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..+.+++|+|+++.+++++.+|.+++||+..++.... ...|...+.++.|+| ++.++++++.|+.|++|+.
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--------LRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred cccceEEECCCcCEEEEecCCCcEEEEECCCCceecc--------hhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEc
Confidence 7899999999999999999999999999987554321 224556899999999 5777777777999999996
Q ss_pred Cc---------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 517 PN---------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 517 ~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
.+ .+++++++++|++++.||.|++|+
T Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 52 366888999999999999999996
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-28 Score=260.93 Aligned_cols=264 Identities=18% Similarity=0.372 Sum_probs=221.9
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
...+|.|.-.+++++-..|.|++||++-... ...|..|.++|..++|+|.+.+++|||.|..|+||+..+.+
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tl-------i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr- 84 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTL-------IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR- 84 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhH-------HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce-
Confidence 4467777778999999999999999865432 45688899999999999999999999999999999998765
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
++.++.||.+.|..+.|++
T Consensus 85 -------------------------------------------------------------clftL~GHlDYVRt~~FHh 103 (1202)
T KOG0292|consen 85 -------------------------------------------------------------CLFTLLGHLDYVRTVFFHH 103 (1202)
T ss_pred -------------------------------------------------------------ehhhhccccceeEEeeccC
Confidence 4567789999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--------------
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-------------- 428 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-------------- 428 (686)
.- .++|+|.|.||+||+..+++|+..+. |+.+|.|.+|+| ...+++++|.|.+||+||+..-+
T Consensus 104 eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 104 EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 88 99999999999999999999999998 999999999999 89999999999999999985310
Q ss_pred --------------EE--EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEE
Q 005646 429 --------------VV--DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 429 --------------~~--~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l 492 (686)
++ .+.+|...|+-++|+|.-..+++|+.|..|++|.++..+.- .. ....+|...|+++
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-----Ev-DtcrgH~nnVssv 256 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-----EV-DTCRGHYNNVSSV 256 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce-----ee-hhhhcccCCcceE
Confidence 11 23468888999999999999999999999999998754421 11 1246788999999
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEeCCc--c-------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 493 QFLPQDSSKVMVSCADSQVRILQGPN--V-------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 493 ~fsp~~~~~l~~~s~D~~I~iwd~~~--~-------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
-|+| ...++++.+.|++|||||+.. . ++.+|..++++.| .|+-+.||.++..
T Consensus 257 lfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 257 LFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE 323 (1202)
T ss_pred EecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEccc
Confidence 9999 889999999999999999753 2 4555666666654 5666777777643
No 46
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=3.2e-27 Score=229.74 Aligned_cols=305 Identities=15% Similarity=0.165 Sum_probs=237.7
Q ss_pred cccCcceeee--cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~~~s--~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+-+++ |+.+++++|+.|....||+...... ..++.+|+..|+++.|+.||.|||||+.+|.|+||+
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-------~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-------AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-------eeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 4666665554 5556899999999999998876542 356889999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
..++.....+.... .-+.+...++.....++...++..-++.+.. +...+.+.||..+++
T Consensus 135 ~stg~~~~~~~~e~---~dieWl~WHp~a~illAG~~DGsvWmw~ip~-----------------~~~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEV---EDIEWLKWHPRAHILLAGSTDGSVWMWQIPS-----------------QALCKVMSGHNSPCT 194 (399)
T ss_pred cccCceEEEeeccc---CceEEEEecccccEEEeecCCCcEEEEECCC-----------------cceeeEecCCCCCcc
Confidence 99998776665222 2223333333333333333333222222211 145678899999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD- 434 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~- 434 (686)
+=.|.|+| +++++..||+|++||..+++++..+. .....+|+.++. .+..++.|+.++.+++-...+++++....
T Consensus 195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 195 CGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred cccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCC
Confidence 99999999 99999999999999999999998887 556788999998 89999999999999999999998875443
Q ss_pred --------cCCcEEE---EEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 435 --------IRQIVTA---VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 435 --------~~~~V~~---v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
+...+.+ +.++..=.++|+|+.||+|.|||+...++.. .-.|...|+.+.|.+ ..+|+
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~---------~c~he~~V~~l~w~~--t~~l~ 342 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH---------ICEHEDGVTKLKWLN--TDYLL 342 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe---------eccCCCceEEEEEcC--cchhe
Confidence 2233444 4445566788999999999999998765542 334667799999998 57999
Q ss_pred EEeCCCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 504 VSCADSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 504 ~~s~D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
+++.+|.|++||..+. ++.+|+.++++|+|.|++.+|+++.
T Consensus 343 t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 343 TACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999998754 4567899999999999999999874
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=2.4e-29 Score=247.42 Aligned_cols=233 Identities=21% Similarity=0.346 Sum_probs=201.1
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccC-CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
...++.++.++++|..+|.||+|+..-+. .+.+++|. ..|++++|+|+...++|++.||+|+|||....+
T Consensus 143 ~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k- 213 (464)
T KOG0284|consen 143 TMKWSHNGTWMISGDKGGMIKYWQPNMNN--------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK- 213 (464)
T ss_pred eEEEccCCCEEEEcCCCceEEecccchhh--------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-
Confidence 45678899999999999999999754322 23345554 999999999999999999999999999987654
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+-..+.||.-.|.+++|+|
T Consensus 214 -------------------------------------------------------------ee~vL~GHgwdVksvdWHP 232 (464)
T KOG0284|consen 214 -------------------------------------------------------------EERVLRGHGWDVKSVDWHP 232 (464)
T ss_pred -------------------------------------------------------------hhheeccCCCCcceeccCC
Confidence 3345689999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEeccCCcEEE
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWVDIRQIVTA 441 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~~~~V~~ 441 (686)
.. +|+++|.|..|++||.+++.|+.++. |...|..+.|+| ++++|+|+|.|..++++|+++.+- ..+.+|+..|++
T Consensus 233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence 88 99999999999999999999999998 999999999999 889999999999999999996554 466679999999
Q ss_pred EEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 442 VCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 442 v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
+.|+| ...+|.+|+.||.|..|.+...+.+ .....+|...|.+++|+| -+.+|++|+.|.++++|.-.
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-------~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-------GEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccc-------cCCCcccccceeeeeccc-cceeEeecCCCcceeeeccC
Confidence 99999 5567888999999999999743322 223567889999999999 89999999999999999743
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.8e-29 Score=239.51 Aligned_cols=274 Identities=22% Similarity=0.328 Sum_probs=217.9
Q ss_pred ecccCcceeeecCCCccceeeccceEEEEEcCCccccccccccC-ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 200 VDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKG-QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 200 ~~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~-~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
...+.++..|+++++++++|+.||.|.||++-.....-.-.|+. ..|--|..+|.||.|+.|...||||+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 45567899999999999999999999999986543211111222 24556889999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+|.+++.+. ++|+..|+
T Consensus 292 i~tG~ClRrFd-------------------------------------------------------------rAHtkGvt 310 (508)
T KOG0275|consen 292 IETGQCLRRFD-------------------------------------------------------------RAHTKGVT 310 (508)
T ss_pred EecchHHHHhh-------------------------------------------------------------hhhccCee
Confidence 99998655443 36999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec--
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-- 434 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-- 434 (686)
++.|+.|+ .+++++.|.++||.-+.+|++++.|. |..+|+...|.+ +++++++++.||+|++|+..+.+++..+.
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence 99999999 99999999999999999999999998 999999999999 99999999999999999999999885553
Q ss_pred -cCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 435 -IRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 435 -~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
...+|+++-.-| +...++++...++++|-++...-.. .....+...+...+..++| .+.++...+.|+.++
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr------sfsSGkREgGdFi~~~lSp-kGewiYcigED~vlY 462 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR------SFSSGKREGGDFINAILSP-KGEWIYCIGEDGVLY 462 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe------eeccCCccCCceEEEEecC-CCcEEEEEccCcEEE
Confidence 355688888777 5568888999999999998753321 1111233445666777888 667777777777777
Q ss_pred EEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 513 ILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 513 iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
-+...+ .+.-+|..+.||+-++||.+++|.
T Consensus 463 CF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 463 CFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 665432 244566777777777777777774
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=7.8e-27 Score=237.77 Aligned_cols=232 Identities=27% Similarity=0.548 Sum_probs=197.6
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+++|.++|++++|+|++++|++++.||.|++|++.+++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------------------- 42 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---------------------------------------- 42 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----------------------------------------
Confidence 4577899999999999999999999999999999997654
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
....+.+|...+..+.|+|++ +|++++.|+.|++||+.+++.+..+. |...|.++.
T Consensus 43 ----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~ 100 (289)
T cd00200 43 ----------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100 (289)
T ss_pred ----------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEE
Confidence 234455688889999999999 99999999999999999987777776 888999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEE-eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 480 (686)
|+| ++.++++++.||.|++||+.+++.... ..+...+++++|+|+++++++++.+|.|++||+..++.....
T Consensus 101 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~------ 173 (289)
T cd00200 101 FSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL------ 173 (289)
T ss_pred EcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeE------
Confidence 999 788888888899999999997776644 457788999999999999999888999999999866543321
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
..|...|.++.|+| ++..+++++.|+.|++||..+ .+.+.+++.++++++.||.|++|++.+
T Consensus 174 --~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 174 --TGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred --ecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 24556799999999 677888888899999999652 256777889999998899999999986
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
+.
T Consensus 251 ~~ 252 (289)
T cd00200 251 GE 252 (289)
T ss_pred ce
Confidence 44
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=8.6e-28 Score=234.68 Aligned_cols=270 Identities=18% Similarity=0.263 Sum_probs=221.4
Q ss_pred ccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC---CEEEEEeCCCcEEEEE
Q 005646 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG---QYLASAGDDGVVRLWQ 278 (686)
Q Consensus 202 ~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~vWd 278 (686)
|..-+.++...++++++|+.||.++||+...... .++.||.++|.+++|.-.. ..|+++|.|.++++|.
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~--------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSI--------KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecCCceE--------EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 4444555655688999999999999999765433 5678999999988885433 3599999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
++.++... +.++.-+||...|-
T Consensus 176 ~~~~~~~~----------------------------------------------------------~~~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 176 WNVGENKV----------------------------------------------------------KALKVCRGHKRSVD 197 (423)
T ss_pred ecCchhhh----------------------------------------------------------hHHhHhccccccee
Confidence 98766221 12333359999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECC-------------------------CCeeeeEee-CCCCeEEEEEeecCCCEEE
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVG-------------------------NDHCLRVFP-HSNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~-------------------------~~~~~~~~~-h~~~V~~v~fsp~~~~~l~ 411 (686)
+++..+++ .+++||.|.+|.||+.. ++.++.++. |..+|.++.|++ ...++
T Consensus 198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~y 275 (423)
T KOG0313|consen 198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIY 275 (423)
T ss_pred EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceE
Confidence 99999999 99999999999999931 122444444 999999999986 77899
Q ss_pred EEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEE
Q 005646 412 SGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG 491 (686)
Q Consensus 412 sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~ 491 (686)
+++.|.+|+.||+.++..+........++++.++|..++|++|+.|..+++||.+++.-.. ......+|...|.+
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-----v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-----VSQSLIGHKNWVSS 350 (423)
T ss_pred eecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCce-----eEEeeecchhhhhh
Confidence 9999999999999999999888889999999999999999999999999999998764322 11224567789999
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEeCCcce---------------eEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 492 FQFLPQDSSKVMVSCADSQVRILQGPNVI---------------GKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 492 l~fsp~~~~~l~~~s~D~~I~iwd~~~~~---------------~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
+.|+|.+...|++++.|+++++||..+.- .-..++.+|++||.|.+|+|+.-.
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 99999999999999999999999987542 122378899999999999998754
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=236.59 Aligned_cols=219 Identities=21% Similarity=0.343 Sum_probs=184.9
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
....|.|+.+. ...+++|..|.+|+|||.++-.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~--------------------------------------------- 228 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE--------------------------------------------- 228 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH---------------------------------------------
Confidence 45679999884 5579999999999999987654
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCC
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD 407 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~ 407 (686)
.+..+.||++.|.|+.|... .|++||.|.+|++||++++++++++- |...|..+.|+ .
T Consensus 229 -----------------c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---n 287 (499)
T KOG0281|consen 229 -----------------CLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---N 287 (499)
T ss_pred -----------------HHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---C
Confidence 44567899999999998543 89999999999999999999999876 89999999996 4
Q ss_pred CEEEEEEcCCcEEEEecCCCcEE----EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 408 NYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 408 ~~l~sgs~Dg~V~iwd~~~~~~~----~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
+++++++.|.++++||+....-+ .+.+|...|+.+.|+ .+++++++.|.+|++|++.+..... ...
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR--------tl~ 357 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR--------TLN 357 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh--------hhh
Confidence 89999999999999999876533 355889999999995 4599999999999999999987654 245
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee-------------EcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-------------KYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~-------------~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
+|...|.++++ .+.++++|+.|.+||+||...+.+ .--|.+.|++|+.||+|+|||+..+..
T Consensus 358 gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 358 GHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred cccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccC
Confidence 56677888877 458999999999999999875422 222889999999999999999998763
No 52
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=9.9e-28 Score=228.06 Aligned_cols=223 Identities=21% Similarity=0.342 Sum_probs=181.3
Q ss_pred cCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee---eeeccCCCCCcceEEeecCCCCceeeeeccccc
Q 005646 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL---TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKI 318 (686)
Q Consensus 242 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (686)
....+..|++++.+-+|+|||.++|||+.|..|+|.|+...-.. .++.....
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~------------------------- 158 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT------------------------- 158 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc-------------------------
Confidence 34457789999999999999999999999999999998632110 00000000
Q ss_pred eeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe---eeeEeeCC
Q 005646 319 SILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH---CLRVFPHS 394 (686)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~---~~~~~~h~ 394 (686)
...-..+++|..|..+|++|.|+|.. .|++++.|++|+++|+.... ..+.|...
T Consensus 159 ----------------------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~ 216 (430)
T KOG0640|consen 159 ----------------------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT 216 (430)
T ss_pred ----------------------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhcc
Confidence 00012468889999999999999988 99999999999999997654 34556678
Q ss_pred CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE----EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD----WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~----~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
.+|.+|.|+| .|.+|+.|....++|+||+.+.++.. -.+|.+.|+++.|++.|++.++|+.||.|++||--.+++
T Consensus 217 ~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 217 EPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred ceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH
Confidence 8999999999 99999999999999999999998763 335788999999999999999999999999999877775
Q ss_pred eeeeeEEeeccccCC-CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 471 ELDAEICVHSKKKAP-CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~-~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.. ..++| ...|.+..|.. +|+||++.+.|..|++|.+.++.
T Consensus 296 v~t-------~~~AH~gsevcSa~Ftk----------------------------n~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 296 VRT-------IGNAHGGSEVCSAVFTK----------------------------NGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred HHH-------HHhhcCCceeeeEEEcc----------------------------CCeEEeecCCcceeeeeeecCCc
Confidence 432 23334 35688888888 99999999999999999999976
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.7e-28 Score=231.19 Aligned_cols=240 Identities=23% Similarity=0.417 Sum_probs=209.3
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+.+.-+-|..|+|||+||++|+.||.|.|||+.+|+....++..
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ------------------------------------ 254 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ------------------------------------ 254 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh------------------------------------
Confidence 45677889999999999999999999999999999865544422
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEee
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNP 404 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp 404 (686)
....|.-+..+|.|+.|+.|. .|++|+.||.|++|.+.+|.|++.|. |...|+|+.|+.
T Consensus 255 ------------------Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr 316 (508)
T KOG0275|consen 255 ------------------AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR 316 (508)
T ss_pred ------------------hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence 122344588999999999999 99999999999999999999999997 999999999999
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
|+..+++++.|.++||.-+.+++++ .+.+|...|+.+.|++||..+++++.||+|++|+..+..+..... ..
T Consensus 317 -D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk------~~ 389 (508)
T KOG0275|consen 317 -DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK------PL 389 (508)
T ss_pred -CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc------CC
Confidence 9999999999999999999999987 677899999999999999999999999999999999877654332 22
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-----------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-----------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+...+|+.+...|.++..++++-..++|.|.++... .+.+|.|.++.+.++|+.+|.+.+.++
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 344679999999988999999999999999986422 457789999999999999999999998
Q ss_pred CC
Q 005646 547 EE 548 (686)
Q Consensus 547 ~~ 548 (686)
+.
T Consensus 470 ~L 471 (508)
T KOG0275|consen 470 KL 471 (508)
T ss_pred ce
Confidence 74
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.6e-27 Score=216.74 Aligned_cols=269 Identities=20% Similarity=0.338 Sum_probs=215.0
Q ss_pred ccCcceeeecC-CCcccee-------eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCC
Q 005646 202 KQGEGERVRLN-EEDAMFC-------SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDG 272 (686)
Q Consensus 202 ~~~~~~~~s~~-~~~l~~g-------~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg 272 (686)
.++....|+|- +++|+.+ ...|++.|.+..... .+...+.+ .-...+..++|+++ .+.+++++.||
T Consensus 9 f~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~----gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDG 83 (311)
T KOG0277|consen 9 FHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK----GIQECQSY-DTEDGLFDVAWSENHENQVIAASGDG 83 (311)
T ss_pred cccceeEecccccchhheeehhhcccccCceEEEEecCCCC----CeEEEEee-ecccceeEeeecCCCcceEEEEecCc
Confidence 55666677754 3455443 346788888764211 11111112 23568999999995 55788999999
Q ss_pred cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 273 ~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
+++|||+... .+|++.++.
T Consensus 84 SLrl~d~~~~-------------------------------------------------------------s~Pi~~~kE 102 (311)
T KOG0277|consen 84 SLRLFDLTMP-------------------------------------------------------------SKPIHKFKE 102 (311)
T ss_pred eEEEeccCCC-------------------------------------------------------------CcchhHHHh
Confidence 9999995332 258899999
Q ss_pred CCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-Cc
Q 005646 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CH 428 (686)
Q Consensus 353 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~ 428 (686)
|..+|.++.|++.. .++++|.|++|++|+...++.+.+|. |+.-|...+|+|..+++|+++|.|+++++||++. ++
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 99999999999865 78888999999999999999999998 9999999999999999999999999999999985 45
Q ss_pred EEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 429 VVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 429 ~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
.+.+..|...|.++.|+. +.+.+++|+.|+.|+.||++.-+... ....+|.-.|..+.|+|.....|++++.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl-------~eL~gh~~AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL-------FELNGHGLAVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc-------eeecCCceEEEEEecCcchhhHhhhccc
Confidence 556677888999999998 66789999999999999998765331 1235677889999999988899999999
Q ss_pred CCcEEEEeCCcc----------------eeEcC-CCCEEEEEeCCCcEEEEeC
Q 005646 508 DSQVRILQGPNV----------------IGKYK-DGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 508 D~~I~iwd~~~~----------------~~~~~-dg~~l~sgs~Dg~V~iWd~ 543 (686)
|-++||||.... +.+++ ++.++|+++-|+.++||+.
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999996521 22333 7899999999999999984
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1.4e-27 Score=239.98 Aligned_cols=255 Identities=16% Similarity=0.246 Sum_probs=210.3
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
.+..+++++.|+.|+||++..... ..+++.+|..+|.+++|+++|..++|+|.|+.|++||+++|+++..+.
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~------~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-- 297 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRR------CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-- 297 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcc------eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe--
Confidence 556889999999999999866332 246788999999999999999999999999999999999998665543
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLL 369 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~ 369 (686)
-...+.|+.|+|++ .++
T Consensus 298 -------------------------------------------------------------~~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 298 -------------------------------------------------------------LDKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred -------------------------------------------------------------cCCCceeeecCCCCCcEEE
Confidence 22466899999988 889
Q ss_pred EEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc--CCcEEEEEEcc
Q 005646 370 SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI--RQIVTAVCYRP 446 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--~~~V~~v~~sp 446 (686)
+|+.|+.|+.||+++++.++.+. |-+.|..|.|-| ++.+|++.+.|+.|+||+.+..-.+..+.. .....++..+|
T Consensus 317 ~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P 395 (503)
T KOG0282|consen 317 VGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP 395 (503)
T ss_pred EecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence 99999999999999999999988 889999999999 999999999999999999998876644432 23456789999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC--CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----
Q 005646 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP--CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV----- 519 (686)
Q Consensus 447 dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~----- 519 (686)
++.++++-+.|+.|.+|.+...- .+. ......+| .+.-..+.|+| |+.+|++|..||.+.+||..+.
T Consensus 396 ~~~~~~aQs~dN~i~ifs~~~~~-r~n----kkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 396 NGKWFAAQSMDNYIAIFSTVPPF-RLN----KKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred CCCeehhhccCceEEEEeccccc-ccC----HhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhc
Confidence 99999999999999999965322 111 11112233 24456789999 9999999999999999996542
Q ss_pred ----------eeEcC-CCCEEEEEeCCCcEEEEe
Q 005646 520 ----------IGKYK-DGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 520 ----------~~~~~-dg~~l~sgs~Dg~V~iWd 542 (686)
+.|+| ....+||++-||.|++|+
T Consensus 470 lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 470 LKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 45666 557899999999999996
No 56
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=7.2e-26 Score=245.99 Aligned_cols=207 Identities=18% Similarity=0.278 Sum_probs=159.3
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccc-----ccc-ccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEe
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKEL-----SAL-YKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~-----~~~-~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~ 279 (686)
...++++..++++..+.....|+.......+ ..+ .....+.+|.+.|++++|+| ++++||||+.|++|+|||+
T Consensus 26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred ccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 3444555566666666666666543321110 000 11235789999999999999 8899999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.++..... ...++..+.+|...|.+
T Consensus 106 ~~~~~~~~-------------------------------------------------------~~~~l~~L~gH~~~V~~ 130 (493)
T PTZ00421 106 PEEGLTQN-------------------------------------------------------ISDPIVHLQGHTKKVGI 130 (493)
T ss_pred CCCccccc-------------------------------------------------------cCcceEEecCCCCcEEE
Confidence 76431100 01356778899999999
Q ss_pred EEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-Eecc
Q 005646 360 LSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDI 435 (686)
Q Consensus 360 l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~ 435 (686)
++|+|++ +|++++.|++|+|||+.+++++..+. |...|++++|+| ++++|++++.|++|+|||+++++.+. ...|
T Consensus 131 l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 131 VSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 9999975 89999999999999999999988887 999999999999 99999999999999999999988764 4455
Q ss_pred CCc-EEEEEEccCCCEEEEEe----cCCcEEEEeCCCCe
Q 005646 436 RQI-VTAVCYRPDGQGGIVGS----MMGDCRFYNVSDNH 469 (686)
Q Consensus 436 ~~~-V~~v~~spdg~~l~~gs----~dg~i~iwd~~~~~ 469 (686)
... +..+.|.+++..+++++ .|+.|++||+++..
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 543 45678999887777654 47899999997644
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.3e-26 Score=232.52 Aligned_cols=260 Identities=14% Similarity=0.283 Sum_probs=213.7
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+..|...|.++.|+|...+++++-..|.|.|||.++...++.+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf----------------------------------- 51 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF----------------------------------- 51 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-----------------------------------
Confidence 346669999999999999999999999999999999887644433
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
.-..-+|.+..|-+.. .+++|+.|..||||+..++..++.|. |.++|.||+
T Consensus 52 ---------------------------eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~ia 104 (794)
T KOG0276|consen 52 ---------------------------EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIA 104 (794)
T ss_pred ---------------------------eecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeee
Confidence 3345577788887766 99999999999999999999999999 999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCc--EEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
.+| ...+++|+|.|-+|++||....= ...+.+|...|.+++|.| |.+.+|+++-|++|++|.+........
T Consensus 105 vHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT----- 178 (794)
T KOG0276|consen 105 VHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT----- 178 (794)
T ss_pred ecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee-----
Confidence 999 88999999999999999998763 336778999999999999 778999999999999999977654432
Q ss_pred eccccCCCCCeEEEEEeCC-CCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 479 HSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~-~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
..+|...|+++.|-+. +..+|++|+.|..|+|||..+ .++|+|.-..|+|||+||+|+||+
T Consensus 179 ---l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 179 ---LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred ---eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 3457788999999884 346999999999999999643 477899999999999999999999
Q ss_pred CCCCCCC--CccccccccccccccCCcEEEecCC
Q 005646 543 CIGHEEP--AHDQAKTIRSLERFTTNASIAIPWC 574 (686)
Q Consensus 543 ~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~s~~ 574 (686)
-.+-+.. .......++++........+++-.|
T Consensus 256 s~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 256 SKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred CcceehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 8875522 2233345555554444444555555
No 58
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=3e-26 Score=214.23 Aligned_cols=295 Identities=18% Similarity=0.220 Sum_probs=219.0
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .++..+|+.|.++++|..+.||-...... .-++.||++.|+|+..+.+.++|+||+.|.++++||
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-------lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCce-------eeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 344444 45567889999999999999996533322 357889999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEE--EeCCcc---ccccCCCeEEeccC
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV--VFPPKV---FRILEKPLHEFHGH 353 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~l~~h 353 (686)
+.+|+.+..++.+. .+..+.++..+...+....+.-...+. +++.+. -...+.|+..+..+
T Consensus 81 v~tGk~la~~k~~~--------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 81 VETGKQLATWKTNS--------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred cCCCcEEEEeecCC--------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 99999888877543 233334444444444444333222222 222211 11124578888889
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe-e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~-~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
...++.+-|.|-+ .|++|..||.|.+||+++++.+..- . |...|+.|+++| +..+|++++.|.+-++||.++-+++
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVL 225 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceeeE
Confidence 9999999999999 9999999999999999998655444 3 999999999999 9999999999999999999999999
Q ss_pred EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEe--CCCCeeeeeee----EEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN--VSDNHLELDAE----ICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 431 ~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd--~~~~~~~~~~~----~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
.......+|++.+++|-...++.|+....--|=- .+.++.....- -.-.+..++|.++|++++|+|
T Consensus 226 Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-------- 297 (327)
T KOG0643|consen 226 KTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-------- 297 (327)
T ss_pred EEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC--------
Confidence 9999999999999999877777765433322222 22222111000 001234678999999999999
Q ss_pred EeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 505 SCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 505 ~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+|+..++|++||.|++.-++.
T Consensus 298 --------------------dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 298 --------------------DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred --------------------CCcccccCCCCceEEEEEecc
Confidence 788888888888888876654
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=211.05 Aligned_cols=235 Identities=19% Similarity=0.329 Sum_probs=196.2
Q ss_pred ccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 202 KQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 202 ~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
+++.+ .++..+|++.++++.|.+|++|+..... ..+++.+|...|..++.+.|...+++||.|+.|.+||+
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 44444 4566678899999999999999754432 35778999999999999999999999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+|+ .++.|.+|.+.|+.
T Consensus 89 ~TGk--------------------------------------------------------------v~Rr~rgH~aqVNt 106 (307)
T KOG0316|consen 89 NTGK--------------------------------------------------------------VDRRFRGHLAQVNT 106 (307)
T ss_pred ccCe--------------------------------------------------------------eeeecccccceeeE
Confidence 9987 45677899999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCC--eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
++|+.+. .+++|+.|.++++||.++. ++++.+. ..+.|.+|.. .+..|++|+.||++|.||++.++... -..
T Consensus 107 V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v---~~heIvaGS~DGtvRtydiR~G~l~s-Dy~ 182 (307)
T KOG0316|consen 107 VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV---AEHEIVAGSVDGTVRTYDIRKGTLSS-DYF 182 (307)
T ss_pred EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe---cccEEEeeccCCcEEEEEeecceeeh-hhc
Confidence 9999988 9999999999999999865 5777777 7789999998 46889999999999999999998752 224
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEE--EEEeCCCCCeEEEEeCCCcEEE
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG--FQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~--l~fsp~~~~~l~~~s~D~~I~i 513 (686)
..+|++++|++||+..++++.|+++++.|-.++++... .++|...=.. .+++. ....+++|+.||.|.+
T Consensus 183 g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s--------YkGhkn~eykldc~l~q-sdthV~sgSEDG~Vy~ 253 (307)
T KOG0316|consen 183 GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS--------YKGHKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYF 253 (307)
T ss_pred CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH--------hcccccceeeeeeeecc-cceeEEeccCCceEEE
Confidence 57899999999999999999999999999999886542 3344443333 34444 5578999999999999
Q ss_pred EeCCc
Q 005646 514 LQGPN 518 (686)
Q Consensus 514 wd~~~ 518 (686)
||+.+
T Consensus 254 wdLvd 258 (307)
T KOG0316|consen 254 WDLVD 258 (307)
T ss_pred EEecc
Confidence 99764
No 60
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=4.8e-27 Score=231.68 Aligned_cols=266 Identities=22% Similarity=0.311 Sum_probs=226.9
Q ss_pred ccCcceee--ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 202 KQGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 202 ~~~~~~~~--s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
|.+++..+ -++.+.+++|+.|..|++|+......+ ...+|.|-.++|+.++|.++++++++++.|+.+++|++
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-----~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-----LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhh-----hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 44555544 455579999999999999987655432 24668888999999999999999999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
...+ ..++|.||++.|++
T Consensus 249 d~~r--------------------------------------------------------------~~~TLsGHtdkVt~ 266 (459)
T KOG0288|consen 249 DSLR--------------------------------------------------------------LRHTLSGHTDKVTA 266 (459)
T ss_pred cchh--------------------------------------------------------------hhhhhcccccceee
Confidence 8765 45778899999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~ 438 (686)
+.|.... .+++|+.|.+|++||+....|.+++-....+..|..+ ...+++|..|++||+||+++..+.......+.
T Consensus 267 ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~ 343 (459)
T KOG0288|consen 267 AKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGR 343 (459)
T ss_pred ehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcc
Confidence 9998877 6999999999999999999999998888888888875 46799999999999999999999988888999
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP- 517 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~- 517 (686)
|+++..+++|..+++++.|.++.+.|+++........ ..+.+.+ ...+.+.|+| ++.++++|+.||.|+||+..
T Consensus 344 vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s--A~g~k~a--sDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 344 VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS--AEGFKCA--SDWTRVVFSP-DGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred eeeEeeccCCeEEeeecCCCceeeeecccccEEEEee--ccccccc--cccceeEECC-CCceeeeccCCCcEEEEEccC
Confidence 9999999999999999999999999999876554322 2222333 3389999999 88999999999999999853
Q ss_pred ----------------cceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 518 ----------------NVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 518 ----------------~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
+.+.|.|.|.+|++++.++.+.+|.
T Consensus 419 gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 419 GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 3477889999999999999999994
No 61
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.7e-25 Score=211.90 Aligned_cols=240 Identities=19% Similarity=0.368 Sum_probs=191.6
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+..-.+.|++|.|+++|.+|++++.|.+|+|||..+++.+..+.
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--------------------------------- 53 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------------------------------- 53 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---------------------------------
Confidence 44555567899999999999999999999999999999887544443
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC--CCcEEEEECCCCeeeeEee-CCCCeE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI--DKTVRLWRVGNDHCLRVFP-HSNYVT 398 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~--Dg~V~iWd~~~~~~~~~~~-h~~~V~ 398 (686)
.+.-.|..+.|.... .++.++. |.+||.-++.+.+.++.|. |...|+
T Consensus 54 -----------------------------skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~ 104 (311)
T KOG1446|consen 54 -----------------------------SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVN 104 (311)
T ss_pred -----------------------------cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEE
Confidence 344455555554433 4555554 8999999999999999998 999999
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
+|..+| -++.|++++.|++||+||++..++......... ..++|.|.|-++|++...+.|++||++.-.......+.+
T Consensus 105 sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i 182 (311)
T KOG1446|consen 105 SLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI 182 (311)
T ss_pred EEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc
Confidence 999999 679999999999999999998877765554443 347899999999999988899999998643222111111
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc------------------eeEcCCCCEEEEEeCCCcEEE
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------------------IGKYKDGKHIVSAGEDSNVYM 540 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------------------~~~~~dg~~l~sgs~Dg~V~i 540 (686)
........+.+.|+| +++.|+++...+.+.+.|..++ .++.||++++++|+.||+|++
T Consensus 183 ---~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 183 ---TDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHV 258 (311)
T ss_pred ---CCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEE
Confidence 224457799999999 8999999999999999985432 457799999999999999999
Q ss_pred EeCCCCCCCC
Q 005646 541 WNCIGHEEPA 550 (686)
Q Consensus 541 Wd~~~~~~~~ 550 (686)
|+++++....
T Consensus 259 w~~~tg~~v~ 268 (311)
T KOG1446|consen 259 WNLETGKKVA 268 (311)
T ss_pred EEcCCCcEee
Confidence 9999987433
No 62
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3.3e-25 Score=241.81 Aligned_cols=186 Identities=15% Similarity=0.312 Sum_probs=151.5
Q ss_pred eeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCee-eeeeccCCCCCc
Q 005646 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDER-LTEVDIPEIDPS 296 (686)
Q Consensus 219 g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~-~~~~~~~~~~~~ 296 (686)
|+.++.|++|+..+.. ....+.+|.++|++++|+|+ +++||||+.|++|+|||+.++.. ...+
T Consensus 50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i-------- 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI-------- 114 (568)
T ss_pred CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------
Confidence 6678899999865431 23567899999999999996 78999999999999999976431 0000
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECC
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID 374 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~D 374 (686)
..++..+.+|...|.+++|+|++ .|++++.|
T Consensus 115 -----------------------------------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 115 -----------------------------------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred -----------------------------------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 02455677899999999999988 56799999
Q ss_pred CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCCcEEE-----EEEccCC
Q 005646 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTA-----VCYRPDG 448 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~-----v~~spdg 448 (686)
++|+|||+.+++.+..+.|...|.+++|+| ++.+|++++.|++|+|||+++++.+. +..|.+.+.. ..|++++
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence 999999999999888888888999999999 99999999999999999999998774 4556655433 3456899
Q ss_pred CEEEEEecCC----cEEEEeCCC
Q 005646 449 QGGIVGSMMG----DCRFYNVSD 467 (686)
Q Consensus 449 ~~l~~gs~dg----~i~iwd~~~ 467 (686)
.+|++++.++ .|+|||++.
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCC
Confidence 9999987774 799999985
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.5e-26 Score=246.26 Aligned_cols=237 Identities=18% Similarity=0.351 Sum_probs=207.4
Q ss_pred cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
...+..|..++|+|...+++++-..|.|++||.+-+.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t------------------------------------------- 42 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT------------------------------------------- 42 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhh-------------------------------------------
Confidence 3456789999999999999999999999999997765
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEee
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP 404 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp 404 (686)
.++.|..|.++|..+.|+|++ +++||+.|..|++|+..+.+|+.++. |-++|..+.|++
T Consensus 43 -------------------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh 103 (1202)
T KOG0292|consen 43 -------------------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH 103 (1202)
T ss_pred -------------------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC
Confidence 466778899999999999999 99999999999999999999998887 999999999999
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee----------
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD---------- 473 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~---------- 473 (686)
...+++++|.|.+||||+..+++++ ...+|...|.|..|+|....+++++-|-+|||||+..-+....
T Consensus 104 -eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 104 -EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred -CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 8999999999999999999999988 6678999999999999999999999999999999864321110
Q ss_pred -----------eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-----------------cceeEcCC
Q 005646 474 -----------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-----------------NVIGKYKD 525 (686)
Q Consensus 474 -----------~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-----------------~~~~~~~d 525 (686)
....+.....+|...|+-++|+| .-.++++|+.|..|++|... +++-|+|.
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH 261 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc
Confidence 01122233467889999999999 77899999999999999743 45778999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCC
Q 005646 526 GKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 526 g~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+|+|.|+|++|+|||++...
T Consensus 262 q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred cceeEecCCCccEEEEeccccc
Confidence 9999999999999999998765
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=226.98 Aligned_cols=267 Identities=20% Similarity=0.330 Sum_probs=216.3
Q ss_pred CcceeeecCC--CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeec
Q 005646 204 GEGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (686)
Q Consensus 204 ~~~~~~s~~~--~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~ 281 (686)
..+.++++++ .+-+..+..-++.||+...... ..++.-.+..|.++.|..||++||.|...|.|+|+|..+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~-------~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV-------RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhh-------hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 3444444444 3333344456788887654321 233444677899999999999999999999999999544
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
. ..++.+++|+.+|....
T Consensus 100 r--------------------------------------------------------------~iLR~~~ah~apv~~~~ 117 (487)
T KOG0310|consen 100 R--------------------------------------------------------------VILRQLYAHQAPVHVTK 117 (487)
T ss_pred H--------------------------------------------------------------HHHHHHhhccCceeEEE
Confidence 2 14567788999999999
Q ss_pred eeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC-cEEEEeccCC
Q 005646 362 WSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDIRQ 437 (686)
Q Consensus 362 ~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~~~ 437 (686)
|+|.+ .|++|+.|+.+++||+.+......+. |+++|.|.+|+|.++.+++||+.||+||+||++.. ..+...+|..
T Consensus 118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~ 197 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC 197 (487)
T ss_pred ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC
Confidence 99987 89999999999999999998754555 99999999999988899999999999999999987 6778889999
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
+|..+.+-|.|..+++++. ..|++||+.++..... ....|.+.|||+.+.. ++..|++++-|+.+++||..
T Consensus 198 pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~-------~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 198 PVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT-------SMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred ceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh-------hhhcccceEEEEEeec-CCceEeecccccceEEEEcc
Confidence 9999999999999998754 5799999986553321 2334788999999999 78999999999999999955
Q ss_pred cc--------------eeEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 518 NV--------------IGKYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 518 ~~--------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
+. ++.+|+++.++.|-.||.+-+=+....++
T Consensus 269 ~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 269 NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred ceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhcccC
Confidence 42 67888999999999999988876665553
No 65
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=3e-26 Score=229.53 Aligned_cols=263 Identities=18% Similarity=0.286 Sum_probs=200.0
Q ss_pred eecccCcceeeecCCC---ccceeeccceEEEEEcCCcccccc---ccccCceecccCCceEEEEEeeC-CCEEEEEeCC
Q 005646 199 VVDKQGEGERVRLNEE---DAMFCSKVQRVKVYHCKKRSKELS---ALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDD 271 (686)
Q Consensus 199 ~~~~~~~~~~~s~~~~---~l~~g~~d~~v~vw~~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D 271 (686)
.+.|.+++++.++.++ .+++.+..+.|.|||+.+...... ...+.-.|.+|+..-.+|+|++. .-+|++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 3578899999887654 677788999999999977543222 22334478999999999999985 3479999999
Q ss_pred CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec
Q 005646 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (686)
Q Consensus 272 g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (686)
++|.+||+........ ...+...+.
T Consensus 200 ~~i~lwdi~~~~~~~~-------------------------------------------------------~~~p~~~~~ 224 (422)
T KOG0264|consen 200 HTICLWDINAESKEDK-------------------------------------------------------VVDPKTIFS 224 (422)
T ss_pred CcEEEEeccccccCCc-------------------------------------------------------cccceEEee
Confidence 9999999976541100 013567788
Q ss_pred cCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCC--CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 352 GHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGN--DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~--~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
+|...|.+++|++-. ++++++.|+.+.|||+++ .++..... |.+.|+|++|+|.++.+||||+.|++|++||+|+
T Consensus 225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 999999999999977 899999999999999995 44444444 9999999999999999999999999999999997
Q ss_pred Cc--EEEEeccCCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeee------eeeEEeeccccCCCCCeEEEEEeCC
Q 005646 427 CH--VVDWVDIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLEL------DAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 427 ~~--~~~~~~~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
-. +..+..|...|..|.|+|. ...||+++.|+.+.+||+..-...+ ..+..+.-...+|...|..+.|+|.
T Consensus 305 L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ 384 (422)
T KOG0264|consen 305 LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN 384 (422)
T ss_pred cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC
Confidence 54 5578899999999999995 4578888999999999997432221 1111222235678899999999996
Q ss_pred CCCeEEEEeCCCcEEEEeC
Q 005646 498 DSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~ 516 (686)
.+..+++.+.|+.++||.+
T Consensus 385 ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 385 EPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCeEEEEecCCceEEEeec
Confidence 4444444444444444443
No 66
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-25 Score=210.21 Aligned_cols=205 Identities=20% Similarity=0.347 Sum_probs=179.7
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
-++||+.+|+.++|+.+|.+|+|++.|.++.||--.+|+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe----------------------------------------- 43 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE----------------------------------------- 43 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------------------------
Confidence 378999999999999999999999999999999877776
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEe
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fs 403 (686)
.+-++.||.+.|+++....+. +|++|+.|.+++|||+.+|+++..+..+.+|..+.|+
T Consensus 44 ---------------------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 44 ---------------------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFS 102 (327)
T ss_pred ---------------------eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeec
Confidence 355678999999999998887 9999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEEcC-----CcEEEEecCCC-------c-EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 404 PVDDNYFISGSID-----GKVRIWAVLSC-------H-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 404 p~~~~~l~sgs~D-----g~V~iwd~~~~-------~-~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
+ ++++++....+ +.|.++|++.. . ......+...++.+-|.|-+++|++|..||.|.+||++++..
T Consensus 103 ~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~ 181 (327)
T KOG0643|consen 103 F-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE 181 (327)
T ss_pred c-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce
Confidence 9 88888877643 67999999843 3 445566678899999999999999999999999999998764
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
... ....|...|+.++++| |..+++|++.|.+-++||+.+-.
T Consensus 182 ~v~-------s~~~h~~~Ind~q~s~----------------------------d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 182 LVD-------SDEEHSSKINDLQFSR----------------------------DRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred eee-------chhhhccccccccccC----------------------------CcceEEecccCccceeeecccee
Confidence 322 2344667899999999 89999999999999999998754
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=2.1e-26 Score=213.10 Aligned_cols=241 Identities=21% Similarity=0.347 Sum_probs=207.0
Q ss_pred cccCcceeeecCCC--ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEGERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~~~s~~~~--~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|++.+-....+.+ ..++++.|=+.+||+.-.... + +.| .|+.-|.+++|+.|.++|+|||.++.+||+|
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgde-l------hsf-~hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE-L------HSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh-h------hhh-hhhheeeeEEecccchhhhccchHHHhhhhh
Confidence 56676655555544 667889999999998654322 1 112 3888999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
++..+ .+..++.+|.+.|.
T Consensus 129 ln~p~-------------------------------------------------------------App~E~~ghtg~Ir 147 (334)
T KOG0278|consen 129 LNRPK-------------------------------------------------------------APPKEISGHTGGIR 147 (334)
T ss_pred ccCCC-------------------------------------------------------------CCchhhcCCCCcce
Confidence 97654 36677889999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
.+.|.... .+++++.|++||+||.++++.++.+..+.+|+++..++ ++++|.+ ...+.|.+||..+-.++.......
T Consensus 148 ~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~ 225 (334)
T KOG0278|consen 148 TVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLKSYKMPC 225 (334)
T ss_pred eEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEE-ecCceeEEeccccccceeeccCcc
Confidence 99998776 89999999999999999999999999999999999999 8876655 557789999999999999999999
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.|.+.+++|+...+++|+.|+.++.||..++..+- ...++|.++|.++.|+|
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~-------~~nkgh~gpVhcVrFSP--------------------- 277 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG-------SYNKGHFGPVHCVRFSP--------------------- 277 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceee-------ecccCCCCceEEEEECC---------------------
Confidence 99999999999999999999999999999887432 13578899999999999
Q ss_pred cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 ~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||...++||+||+|+||....++
T Consensus 278 -------dGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 278 -------DGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred -------CCceeeccCCCceEEEEEecCCC
Confidence 89999999999999999988765
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=216.28 Aligned_cols=261 Identities=19% Similarity=0.235 Sum_probs=219.7
Q ss_pred cceeeecCC--CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 205 EGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~--~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
.+.++...+ +..++|+.|..+.++|...... ...|.||...|+.+.|+|+...+++++.|-.|+||.+...
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~-------l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQI-------LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhh-------hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 345555444 7899999999999998765433 3568899999999999999999999999999999987543
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
. .......|..+|+.+..
T Consensus 294 s--------------------------------------------------------------~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 294 S--------------------------------------------------------------EPTSSRPHEEPVTGLSL 311 (506)
T ss_pred c--------------------------------------------------------------Cccccccccccceeeee
Confidence 3 12334569999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEeeCC---CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCC
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQ 437 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~---~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~ 437 (686)
+|.| ||++++.|++..+.|++++.++....+. -.+++.+||| |+.+|.+|..||.|+|||+..+..+ .+.+|.+
T Consensus 312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred ccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 9999 9999999999999999999999888864 4589999999 9999999999999999999988766 6668999
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe--
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ-- 515 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd-- 515 (686)
+|.+++|+.+|-+|++++.|+.|++||++..+.... +.+. ....+.++.|.+ .+.+|++++.|=+|++++
T Consensus 391 ~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt--~~l~-----~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT--IQLD-----EKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred ceeEEEeccCceEEEEEecCCeEEEEEehhhcccce--eecc-----ccccceeEEEcC-CCCeEEeecceeEEEEEecc
Confidence 999999999999999999999999999986653222 2221 224699999999 889999998888888876
Q ss_pred ---------------CCcceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 516 ---------------GPNVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 516 ---------------~~~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..+++.|....++++++|.|..++++.+
T Consensus 463 ~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 463 TKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 2356777889999999999999998865
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=2.2e-25 Score=217.90 Aligned_cols=254 Identities=19% Similarity=0.344 Sum_probs=200.7
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
.+++++.|+++++|.++........... -+||+..|-+++..++|..+++|+.|.+|+||+..+.. ..++.....
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~---~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~- 235 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKV---CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSN- 235 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhH---hcccccceeEEEecCCCCeEEeecccceeeecccCCCc-cccccccch-
Confidence 6899999999999999876554443332 34999999999999999999999999999999943221 111110000
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECC
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASID 374 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~D 374 (686)
...+..... --.....|+..+.||..+|.++.|++.+.++++|.|
T Consensus 236 -------------------~rrk~~~~~----------------~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwD 280 (423)
T KOG0313|consen 236 -------------------RRRKKQKRE----------------KEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWD 280 (423)
T ss_pred -------------------hhhhhhhhh----------------hcccccCceEEecccccceeeEEEcCCCceEeeccc
Confidence 000000000 000012588899999999999999997799999999
Q ss_pred CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--E--EEEeccCCcEEEEEEccC-CC
Q 005646 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--V--VDWVDIRQIVTAVCYRPD-GQ 449 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~--~~~~~~~~~V~~v~~spd-g~ 449 (686)
.+|+.||+.+++++..+..+..++|+..+| ..++|++|+.|..||+||.+++. + ..+.+|+..|.++.|+|. ..
T Consensus 281 HTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~ 359 (423)
T KOG0313|consen 281 HTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF 359 (423)
T ss_pred ceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce
Confidence 999999999999999999999999999999 99999999999999999999764 3 378899999999999995 45
Q ss_pred EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 450 GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 450 ~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
.|++|+.|+++++||++..+-.+. ...+|..+|.++.|.. +..+++|++|++|+|+....
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~ply-------dI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLY-------DIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcce-------eeccCCceEEEEeccC--CceEEeccCcceEEEecccc
Confidence 688899999999999998763221 1345778999999985 67999999999999987653
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=4.5e-25 Score=242.26 Aligned_cols=288 Identities=20% Similarity=0.323 Sum_probs=218.5
Q ss_pred eeeecCCCccceee--ccceEEEEEcCCcccccc---c--cccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 207 ERVRLNEEDAMFCS--KVQRVKVYHCKKRSKELS---A--LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 207 ~~~s~~~~~l~~g~--~d~~v~vw~~~~~~~~~~---~--~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
.++++++..+++|+ .|+.++||+.+.-..+.. . ..+..+...|.+.|+|+.|+|||+|||+||+|+.|.||..
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 45567788899999 899999998754321111 1 1122356789999999999999999999999999999998
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.... .... .....+...+ .- -+.+..+.+|...|.+
T Consensus 99 ~~~~-~~~~-----------------------fgs~g~~~~v----------------E~----wk~~~~l~~H~~DV~D 134 (942)
T KOG0973|consen 99 AEIG-SGTV-----------------------FGSTGGAKNV----------------ES----WKVVSILRGHDSDVLD 134 (942)
T ss_pred cccC-Cccc-----------------------cccccccccc----------------ce----eeEEEEEecCCCccce
Confidence 6410 0000 0000000000 00 1356788899999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec---
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--- 434 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--- 434 (686)
+.|+|++ +|++++.|++|.||+..+.++++++. |.+.|..+.|.| -++||++-+.|++|+||++.+-.+...+.
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 9999999 99999999999999999999999998 999999999999 99999999999999999987755554332
Q ss_pred ----cCCcEEEEEEccCCCEEEEEec----CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC----CCC--
Q 005646 435 ----IRQIVTAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ----DSS-- 500 (686)
Q Consensus 435 ----~~~~V~~v~~spdg~~l~~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~----~~~-- 500 (686)
.......+.|+|||++|++... ..++.|.+-.+.+. .....+|.+++.++.|+|. ..+
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~--------~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV--------DKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee--------eeeeecCCCceEEEEeChHHhccccccC
Confidence 2345788999999999998533 22466665433321 1224567789999999983 111
Q ss_pred ----------eEEEEeCCCcEEEEeCC----------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 501 ----------KVMVSCADSQVRILQGP----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 501 ----------~l~~~s~D~~I~iwd~~----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+++|+.|++|-||... .-++|+|||..|+.+|.||+|.+..++..+
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 68899999999999853 237899999999999999999999998754
No 71
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1e-25 Score=218.91 Aligned_cols=265 Identities=17% Similarity=0.319 Sum_probs=217.3
Q ss_pred cccCcceeeecCCC---ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 201 DKQGEGERVRLNEE---DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 201 ~~~~~~~~~s~~~~---~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
.|+.-+.++..+++ .+++|+.||.|+||++..... ...+++|.+.|..|++.. ..++|+|.|.+|+.|
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-------~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-------IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-------hheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 56666777776665 578999999999998765432 467899999999999987 679999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
.+... +++++.+ ...+
T Consensus 135 k~~~~---------------------------------------------------------------p~~tilg-~s~~ 150 (433)
T KOG0268|consen 135 KIDGP---------------------------------------------------------------PLHTILG-KSVY 150 (433)
T ss_pred eccCC---------------------------------------------------------------cceeeec-cccc
Confidence 87541 2233322 2345
Q ss_pred eEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc
Q 005646 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
+.+.-+..+ .++|++. .|.|||.....++..+. ..+.|.++.|+|....+|++|+.|+.|.|||+++...+...-.
T Consensus 151 ~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~ 228 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL 228 (433)
T ss_pred cccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee
Confidence 566555544 7888875 59999999999999998 7788999999998888999999999999999999998876666
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
.-.-+.|+|+|.+-.+++|+.|..++.||++.-... ....+.|...|.++.|+| .++.+++|+.|.+||||.
T Consensus 229 ~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p-------~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 229 TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP-------LNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred eccccceecCccccceeeccccccceehhhhhhccc-------chhhcccceeEEEeccCC-CcchhccccccceEEEee
Confidence 667789999998888999999999999999765432 223567889999999999 899999999999999997
Q ss_pred CC----------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 516 GP----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 516 ~~----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
.. .++.++-|.+|+++||+|++|++|.-...+.
T Consensus 301 ~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 301 VNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred cCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 54 2477889999999999999999999876553
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=8.1e-25 Score=238.04 Aligned_cols=261 Identities=18% Similarity=0.331 Sum_probs=216.3
Q ss_pred cCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 203 ~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
...+......++++++++.+++|++|+...... ....+.||.+.|++++|..-+.+|++|+.|.+++|||..++
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~------i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYL------ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEEeecccceE------EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 334555566788999999999999998654332 12348899999999999887889999999999999999888
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
+ ..+.+.+|...|.++..
T Consensus 282 ~--------------------------------------------------------------C~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 282 E--------------------------------------------------------------CTHSLQGHTSSVRCLTI 299 (537)
T ss_pred c--------------------------------------------------------------EEEEecCCCceEEEEEc
Confidence 7 45667789999999976
Q ss_pred eCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEE
Q 005646 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (686)
Q Consensus 363 s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~ 440 (686)
.+ .++++|+.|.+|++|++.++.++.++. |.++|+++..+ +.++++|+.|++|++||+.+++++ .+.+|...|+
T Consensus 300 ~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 300 DP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY 375 (537)
T ss_pred cC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence 43 278889999999999999999999999 99999999984 799999999999999999999988 5668999999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCC-eeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
++.+.+. ..+++|+.|++|++||+.+. ++.. ....|..-+.++.+.. +.|+++++|++|++||..+.
T Consensus 376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~--------tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH--------TLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEEecCc-ceEEeeeeccceEeecCCchhhhhh--------hhcCCccccccccccc---ceeEeccccccEEEeecccC
Confidence 9988765 79999999999999999987 4432 2345666677777654 79999999999999986542
Q ss_pred --e-----------eEcCC-CCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 --I-----------GKYKD-GKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 --~-----------~~~~d-g~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+ .+..- ...+++++.||.+++||+.++.
T Consensus 444 ~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 444 ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCc
Confidence 1 11112 3788999999999999999877
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=6.9e-25 Score=204.60 Aligned_cols=234 Identities=20% Similarity=0.319 Sum_probs=205.7
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+++++|...|.+++|+.+|.+|++|+.|+++++|++.......
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~------------------------------------- 56 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK------------------------------------- 56 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-------------------------------------
Confidence 6788999999999999999999999999999999997654211
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
-...++|.+.|-.++|+|.. .|++++.|++|++||+++++|.........=.-+.
T Consensus 57 -----------------------~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~ 113 (313)
T KOG1407|consen 57 -----------------------ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT 113 (313)
T ss_pred -----------------------hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE
Confidence 12346899999999999977 99999999999999999999999998666667789
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
|+| ++++++.++.|..|.+.|.++.+.+........+..++|+-++.+++..+..|.|.|.....-+.++ .
T Consensus 114 wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~--------s 184 (313)
T KOG1407|consen 114 WSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ--------S 184 (313)
T ss_pred EcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc--------c
Confidence 999 9999999999999999999999999888888889999999888888888888999999887544432 2
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.++|.....++.|+| +++++++|++|..+.+||+... +.|+-||++||+||+|..|-|=++.+|
T Consensus 185 i~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 466778899999999 8999999999999999997643 567779999999999999999999998
Q ss_pred C
Q 005646 547 E 547 (686)
Q Consensus 547 ~ 547 (686)
.
T Consensus 264 d 264 (313)
T KOG1407|consen 264 D 264 (313)
T ss_pred C
Confidence 7
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=5.8e-26 Score=210.21 Aligned_cols=230 Identities=21% Similarity=0.330 Sum_probs=197.8
Q ss_pred ceecccCCceEEEEEee---CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeecccccee
Q 005646 244 QEIQAHDGSILTMKFSP---DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fsp---dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (686)
.+..+|+.+|..++||| +|-+|++++.|+.-.+-+=.+|.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd------------------------------------- 50 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD------------------------------------- 50 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-------------------------------------
Confidence 45779999999999986 78899999999987665544443
Q ss_pred EEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEE
Q 005646 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC 399 (686)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~ 399 (686)
-+-+|.||.+.|+....+.+- ..++++.|-+.+|||.-++..+..|.|..-|..
T Consensus 51 -------------------------wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~ 105 (334)
T KOG0278|consen 51 -------------------------WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKA 105 (334)
T ss_pred -------------------------cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeee
Confidence 456788999999999998887 888999999999999999999999999999999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCc--EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
++|+. |.++|++|+.+..+||||++..+ ...+.+|.+.|..+.|....+.|++++.|++||+||.++++.....+.
T Consensus 106 ~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~- 183 (334)
T KOG0278|consen 106 VAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF- 183 (334)
T ss_pred EEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-
Confidence 99999 99999999999999999998764 457788999999999999889999999999999999999987654332
Q ss_pred eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc--------------eeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--------------IGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~--------------~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..+|+++.+++ ++ .+++....+.|.+||..+. ...+|+...+++|++|..++.||+
T Consensus 184 --------~s~VtSlEvs~-dG-~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 184 --------NSPVTSLEVSQ-DG-RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred --------CCCCcceeecc-CC-CEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEec
Confidence 25699999998 44 4556667788999996542 456778899999999999999999
Q ss_pred CCCC
Q 005646 544 IGHE 547 (686)
Q Consensus 544 ~~~~ 547 (686)
.+++
T Consensus 254 ~Tge 257 (334)
T KOG0278|consen 254 NTGE 257 (334)
T ss_pred cCCc
Confidence 9987
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8e-26 Score=209.98 Aligned_cols=229 Identities=17% Similarity=0.309 Sum_probs=192.6
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
.+.+++++.||.+++||.....+ +.+.++.|+..|.++.|++ +++.+++++-|++|++|+.....
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-------- 138 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-------- 138 (311)
T ss_pred cceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc--------
Confidence 45788899999999999654433 3567889999999999998 56678888999999999976543
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLL 369 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~ 369 (686)
.++++.||..-|...+|+|.. .++
T Consensus 139 ------------------------------------------------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 139 ------------------------------------------------------SVQTFNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred ------------------------------------------------------ceEeecCCccEEEEEecCCCCCCeEE
Confidence 467788999999999999976 999
Q ss_pred EEECCCcEEEEECCCC-eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EEEeccCCcEEEEEEcc
Q 005646 370 SASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRP 446 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~sp 446 (686)
++|.|+++++||++.. +.+....|...|.|+.|+.-+.++++||+.|+.||+||+++-+. ..+.+|.-.|..++|+|
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 9999999999999864 44443339999999999998999999999999999999998653 36678899999999999
Q ss_pred C-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 447 D-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 447 d-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
. ...|++++.|-+++|||...+.-. ......|..-+.++.|++.++..++.++-|..++||+.
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~-------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSA-------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhh-------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 5 457899999999999998754321 12234566779999999999999999999999999984
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-24 Score=207.49 Aligned_cols=255 Identities=22% Similarity=0.334 Sum_probs=204.7
Q ss_pred cceeeccceEEEEEcCCcccc-----ccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 216 AMFCSKVQRVKVYHCKKRSKE-----LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~-----~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
++.|+....|.=+++....+. ...+.+.-.+++|.++|++++.+ |.|+||||.|-+|+|||+....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~------- 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK------- 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh-------
Confidence 456777777776766543311 11222334578999999999986 8899999999999999997754
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC---E
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---Y 367 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~ 367 (686)
.+..+-.|.+.|+++.|.++- +
T Consensus 75 -------------------------------------------------------qlg~ll~HagsitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 75 -------------------------------------------------------QLGILLSHAGSITALKFYPPLSKSH 99 (362)
T ss_pred -------------------------------------------------------hhcceeccccceEEEEecCCcchhh
Confidence 234445699999999999876 9
Q ss_pred EEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc
Q 005646 368 LLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP 446 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp 446 (686)
|++|+.||.|.+|+...-.++..+. |.+.|+.++.+| .+++-++.+.|+.+|+||+-+++.-.........+.|.|+|
T Consensus 100 LlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~ 178 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP 178 (362)
T ss_pred eeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC
Confidence 9999999999999999999999998 999999999999 99999999999999999999998877777777777899999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-------
Q 005646 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------- 519 (686)
Q Consensus 447 dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------- 519 (686)
.|.+++++..+ .|-+|.+.+.++...... ..++.++.|. ++..|++|..|+.|++||....
T Consensus 179 ~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~---------~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~ 246 (362)
T KOG0294|consen 179 QGDHFVVSGRN-KIDIYQLDNASVFREIEN---------PKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFL 246 (362)
T ss_pred CCCEEEEEecc-EEEEEecccHhHhhhhhc---------cccceeeeec--CCceEEEecCCceEEEeccCCCccceeee
Confidence 99999888664 699999887665432211 1346666665 5789999999999999997632
Q ss_pred --------eeE--cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 --------IGK--YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 --------~~~--~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.+ .|++.||+|+|.||.|+|||++...
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred cchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 111 2378899999999999999998764
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.6e-25 Score=211.64 Aligned_cols=275 Identities=14% Similarity=0.220 Sum_probs=211.0
Q ss_pred cceeeecCCCccceeeccceEEEEEcCC-----ccc------cccccccCceecccCCceEEEEEeeCCCEEEEEeCCCc
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKK-----RSK------ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV 273 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~-----~~~------~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 273 (686)
.+.+|+++|..+++|+.|-.|+|.|+.. ..+ ........++|..|..+|+++.|+|....|++|+.|++
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence 3567999999999999999999999862 011 11122334678899999999999999999999999999
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
|+++|+......+.++ ....
T Consensus 196 vKlFDfsK~saKrA~K------------------------------------------------------------~~qd 215 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFK------------------------------------------------------------VFQD 215 (430)
T ss_pred EEEEecccHHHHHHHH------------------------------------------------------------Hhhc
Confidence 9999986543211111 1123
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
..+|.+++|+|.| +|+.|..-.++++||+.+.+|...-. |.+.|+++.+++ ++++.++|+.||.|+|||--+++
T Consensus 216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHH
Confidence 4689999999999 99999999999999999999976653 999999999999 99999999999999999999999
Q ss_pred EEEEec--c-CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 429 VVDWVD--I-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 429 ~~~~~~--~-~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
++..++ | ...|.+..|+.+|+++++.+.|..+++|.+.+++....-.-.... +...--+...|+. ...+++.-
T Consensus 295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t---grq~~rtqAvFNh-tEdyVl~p 370 (430)
T KOG0640|consen 295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT---GRQKHRTQAVFNH-TEDYVLFP 370 (430)
T ss_pred HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcc---cchhhhhhhhhcC-ccceEEcc
Confidence 886553 3 456999999999999999999999999999998875432111000 1111123334554 33444433
Q ss_pred -eCCCcEEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 506 -CADSQVRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 506 -s~D~~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
-..+.+.-||..+ .+.-+|.+.-++|++.|..+++|--.
T Consensus 371 DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 371 DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 3456777787543 25567899999999999999999753
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=4.7e-26 Score=224.75 Aligned_cols=230 Identities=21% Similarity=0.422 Sum_probs=200.1
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
.+..|.+.+..+.|-++...|+|||.|..|++|++...+.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------------------------- 209 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------------------------- 209 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh----------------------------------------
Confidence 4678999999999999988999999999999999865541
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEE
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~f 402 (686)
..+.++.|..+.|+.+.|.+++ ++++++.|+.+++|++...+...++. |.+.|+++.|
T Consensus 210 --------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 210 --------------------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF 269 (459)
T ss_pred --------------------hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehh
Confidence 2345677888999999999999 99999999999999999999999998 9999999999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 482 (686)
.. ....+++|+.|.+|++||+....+....-....+..|+.+ +..+++|-.|++|++||.+........+
T Consensus 270 ~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~------- 339 (459)
T KOG0288|consen 270 KL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP------- 339 (459)
T ss_pred hc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEee-------
Confidence 87 6666999999999999999998888766666777777776 5578899999999999998877654322
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-------------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-------------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-------------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
-.+.|+++..++ ++..|++.+.|..+.++|+.+ -+.|+|++.|+++||.||.|+||++
T Consensus 340 --~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 340 --LGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred --cCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 225799999999 888888999999999999753 3779999999999999999999999
Q ss_pred CCCC
Q 005646 544 IGHE 547 (686)
Q Consensus 544 ~~~~ 547 (686)
.+++
T Consensus 417 ~tgK 420 (459)
T KOG0288|consen 417 FTGK 420 (459)
T ss_pred cCce
Confidence 9987
No 79
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.5e-25 Score=221.61 Aligned_cols=312 Identities=19% Similarity=0.278 Sum_probs=230.4
Q ss_pred HHhhccchhhHHHHHHhHHhhcccceeeecccCcceeeecCCCccce------eeccceEEEEEcCCccccccccccCce
Q 005646 172 VEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMF------CSKVQRVKVYHCKKRSKELSALYKGQE 245 (686)
Q Consensus 172 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~------g~~d~~v~vw~~~~~~~~~~~~~~~~~ 245 (686)
+...++..+|++|+.+.|+.+++...- .+.+... .+.+.++. .-..|+++-.-..+-..... ...+.
T Consensus 65 e~~~Eta~ekr~RlA~e~L~~i~e~~E---~~~d~~~--~~~e~va~rLked~le~~Gr~~r~~a~~v~~~~s--~~~~~ 137 (479)
T KOG0299|consen 65 EFEEETAGEKRLRLAEEYLDEIREIEE---DNFDADD--LDDELVASRLKEDVLEQSGRVRRLVADKVQAPES--SDFRV 137 (479)
T ss_pred cchhcchhHHHHHHHHHHHHHHHhhhh---cccccch--hhHHHHHHHHHHHHHHhcceeehhhhhhcccccc--cccee
Confidence 334577889999999999999862111 1111111 11111111 11233343332222111111 11345
Q ss_pred ecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
+..|.-+|++|+++|++.++++++.||+|.-|++.+++....+--..
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--------------------------------- 184 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--------------------------------- 184 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc---------------------------------
Confidence 67899999999999999999999999999999999887442111000
Q ss_pred ccCCceEEEeCCccccccCCCeEEe-ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEE
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~f 402 (686)
.+......+...- ++|...|.+++.+++| +|++|+.|..|.||+.++.+.++.+. |.+.|.+++|
T Consensus 185 ------------ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~f 252 (479)
T KOG0299|consen 185 ------------EVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAF 252 (479)
T ss_pred ------------hhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeee
Confidence 0000000111111 4899999999999999 99999999999999999999999988 9999999999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
-. ..+.+++++.|++|++|++.....+ .+++|+..|.+|....-++.+-+|+.|+++++|++...... .
T Consensus 253 r~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql---------i 322 (479)
T KOG0299|consen 253 RK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL---------I 322 (479)
T ss_pred ec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee---------e
Confidence 88 7788999999999999999987766 78899999999999988989999999999999999544322 1
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------------------cceeEcCCCCEEEEEeC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------------------NVIGKYKDGKHIVSAGE 534 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------------------~~~~~~~dg~~l~sgs~ 534 (686)
..++.+.+-+++|-. ...+++|+.+|.|.+|+.. +.++..|...++++|+.
T Consensus 323 frg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~ 400 (479)
T KOG0299|consen 323 FRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW 400 (479)
T ss_pred eeCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCC
Confidence 344567899999985 5799999999999999843 23556668899999999
Q ss_pred CCcEEEEeCCCCC
Q 005646 535 DSNVYMWNCIGHE 547 (686)
Q Consensus 535 Dg~V~iWd~~~~~ 547 (686)
+|.|++|.+..+-
T Consensus 401 ~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 401 SGCVRLWKIEDGL 413 (479)
T ss_pred CCceEEEEecCCc
Confidence 9999999999874
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=219.32 Aligned_cols=229 Identities=21% Similarity=0.296 Sum_probs=193.9
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
-.+|+.||..+++|...|.|+|+|++.... ...+++|+.+|..+.|+|. +..|++|+.|+.+++||+.+...
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i-------LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVI-------LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHH-------HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 357888999999999999999999543211 2567889999999999994 66788999999999999987651
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
...+.+|++.|.|.+|+|
T Consensus 146 --------------------------------------------------------------~~~l~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 146 --------------------------------------------------------------QAELSGHTDYVRCGDISP 163 (487)
T ss_pred --------------------------------------------------------------EEEecCCcceeEeecccc
Confidence 245678999999999999
Q ss_pred CC--EEEEEECCCcEEEEECCCC-eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-EE-EEeccCCcE
Q 005646 365 NN--YLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VV-DWVDIRQIV 439 (686)
Q Consensus 365 ~~--~L~s~s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-~~-~~~~~~~~V 439 (686)
.. .++|||.||+|++||++.. ..+..+.|..+|..+.|-| .+.+|++++. ..|++||+.+|. .+ ....|...|
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTV 241 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceE
Confidence 76 8999999999999999987 7888899999999999999 8899999884 579999999554 44 344599999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
||+++..+++.|++|+-|+.+++||+.+.+...... -.++|.+++.+| +...+++|-.||.+.+-+
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~---------~~~pvLsiavs~-dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK---------YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceEEEEeee---------cccceeeEEecC-CCceEEEecccceeeeeh
Confidence 999999999999999999999999987766554221 236799999999 789999999999887764
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=9e-25 Score=220.80 Aligned_cols=260 Identities=18% Similarity=0.295 Sum_probs=197.5
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
.+++|+..|.++++.|.|..|+|||.|.+|++||++.......
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~------------------------------------- 204 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR------------------------------------- 204 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccch-------------------------------------
Confidence 4678999999999999999999999999999999976431000
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe------------
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF------------ 391 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~------------ 391 (686)
.| +.+... ....|.+++|++.+ .|+..+.....+|+|-.....+...
T Consensus 205 --------------~f----r~l~P~--E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT 264 (641)
T KOG0772|consen 205 --------------SF----RQLQPC--ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT 264 (641)
T ss_pred --------------hh----hccCcc--cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence 00 112222 33478999999999 8888888889999997655443332
Q ss_pred -eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEe------ccCCcEEEEEEccCCCEEEEEecCCcEEEE
Q 005646 392 -PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463 (686)
Q Consensus 392 -~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~------~~~~~V~~v~~spdg~~l~~gs~dg~i~iw 463 (686)
.|...++|.+|+|.+.+.|+|++.||++||||+.+.+. ...+ +.+-+++.++|+|||+.||+|+.||.|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 38889999999998889999999999999999986542 2222 234568999999999999999999999999
Q ss_pred eCCCCeeeeeeeEEeeccccCCCC--CeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc------------------ceeEc
Q 005646 464 NVSDNHLELDAEICVHSKKKAPCK--RITGFQFLPQDSSKVMVSCADSQVRILQGPN------------------VIGKY 523 (686)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~--~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------------~~~~~ 523 (686)
+........ ....+.+|.. .|+++.|++ ++++|++-+.|+++++||+.+ .++|+
T Consensus 345 ~~~~~~v~p-----~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 345 DKGSRTVRP-----VMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ecCCccccc-----ceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 985433221 1122456655 899999999 999999999999999999753 37899
Q ss_pred CCCCEEEEEeC------CCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCC
Q 005646 524 KDGKHIVSAGE------DSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGL 576 (686)
Q Consensus 524 ~dg~~l~sgs~------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~ 576 (686)
|+.++|+||.. -|++++||..+-. .+..+ .+....++.+.|+..
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d--------~v~ki-~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLD--------TVYKI-DISTASVVRCLWHPK 468 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEecccee--------eEEEe-cCCCceEEEEeecch
Confidence 99999999963 5789999987644 12111 122355677777743
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.6e-23 Score=188.11 Aligned_cols=271 Identities=17% Similarity=0.227 Sum_probs=194.6
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCcccc----ccccc----cCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKE----LSALY----KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~----~~~~~----~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
....|.+.|...+.|+...+.+|..+....+. ....+ ....-+.|++.|.|.+|+|+|++||||+.|++|++
T Consensus 36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~ 115 (350)
T KOG0641|consen 36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKV 115 (350)
T ss_pred eeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEE
Confidence 34678899999999999999999877542211 01111 12234679999999999999999999999999999
Q ss_pred EEeecCeee-----eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec
Q 005646 277 WQVVEDERL-----TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (686)
Q Consensus 277 Wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (686)
-.++...+. .+++.++..+.-+.|.......- .+....+.++..+++.+.. .+++++.+.
T Consensus 116 l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~-----------~il~s~gagdc~iy~tdc~----~g~~~~a~s 180 (350)
T KOG0641|consen 116 LPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGG-----------AILASAGAGDCKIYITDCG----RGQGFHALS 180 (350)
T ss_pred EecccccccccCcceeeeecCCceeeeEEecCCCcCc-----------eEEEecCCCcceEEEeecC----CCCcceeec
Confidence 876543321 23333333333333333322221 1111122222222222222 146789999
Q ss_pred cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---C-----CCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---H-----SNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h-----~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
||++.|..+- +=++ .+++|+.|++|++||++-..|+.++. | ...|.+++..| .+++|++|..|....+|
T Consensus 181 ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 181 GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLY 258 (350)
T ss_pred CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCceEEE
Confidence 9999999984 3345 99999999999999999999998885 3 36799999999 99999999999999999
Q ss_pred ecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 423 AVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 423 d~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
|++.++.+ .+..|...|.++.|+|.-.++++++.|..|++-|+...-. ....+.+ ...|..++..+.|+|
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla-~el~~~v---v~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA-HELPIMV---VAEHKDKAIQCRWHP 329 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh-hcCceEE---EEeccCceEEEEecC
Confidence 99999887 5667899999999999999999999999999999975422 1111111 123556778888988
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=219.73 Aligned_cols=277 Identities=17% Similarity=0.196 Sum_probs=207.8
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..+.+.|..+++|+.|..|+.||+..-...+......+.. -...|.++.|++.|..|+..+....++|+|-...+...
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e 250 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE 250 (641)
T ss_pred eeecCCCceeeeccccceEEEEecccccccchhhhccCcc--cccccceeeecCCCCeEEEEecCcceeEEccCCceeee
Confidence 4456778899999999999999998765544443333333 34469999999999988888888899999965444222
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
..+.... + .-+..-+||...++|.+|+|..
T Consensus 251 ~~KGDQY---------------------------I-----------------------~Dm~nTKGHia~lt~g~whP~~ 280 (641)
T KOG0772|consen 251 FSKGDQY---------------------------I-----------------------RDMYNTKGHIAELTCGCWHPDN 280 (641)
T ss_pred eeccchh---------------------------h-----------------------hhhhccCCceeeeeccccccCc
Confidence 2221100 0 1123447899999999999987
Q ss_pred --EEEEEECCCcEEEEECCCC-eeeeEee------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE----EEe
Q 005646 367 --YLLSASIDKTVRLWRVGND-HCLRVFP------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV----DWV 433 (686)
Q Consensus 367 --~L~s~s~Dg~V~iWd~~~~-~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~----~~~ 433 (686)
.++|++.||++||||+... +.+.++. ..-.++.++|+| ++++||+|..||.|.+|+.....+. ...
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeee
Confidence 9999999999999999765 3455554 335789999999 9999999999999999998654321 222
Q ss_pred ccCC--cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC----
Q 005646 434 DIRQ--IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA---- 507 (686)
Q Consensus 434 ~~~~--~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~---- 507 (686)
.|.. .|++|+|++||++|++-+.|+++++||++..+..+.....+. ...+-+.++|+| +.++|++|..
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-----t~~~~tdc~FSP-d~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-----TPFPGTDCCFSP-DDKLILTGTSAPNG 433 (641)
T ss_pred ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC-----ccCCCCccccCC-CceEEEecccccCC
Confidence 4544 799999999999999999999999999987665443222222 224567899999 7788888753
Q ss_pred --CCcEEEEeCCcc---------------eeEcCCCCEEEEEeCCCcEEEEe
Q 005646 508 --DSQVRILQGPNV---------------IGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 508 --D~~I~iwd~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
.+.+.+||..+. +.|+|.-+.|+.|+.||+++||=
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 467899985532 56888888899999999999973
No 84
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.9e-24 Score=215.09 Aligned_cols=267 Identities=21% Similarity=0.299 Sum_probs=213.2
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCcccc---ccc------cccCcee--cccCCceEEEEEeeCCCEEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKE---LSA------LYKGQEI--QAHDGSILTMKFSPDGQYLAS 267 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~---~~~------~~~~~~l--~~H~~~I~~l~fspdg~~Las 267 (686)
.|+-.++ .+++++.+.++++.+++|.=|+.....+. ... .+..-.. ++|...|.+++.++||+||||
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 4455554 45677789999999999999998654322 111 1111111 389999999999999999999
Q ss_pred EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCe
Q 005646 268 AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (686)
Q Consensus 268 gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (686)
|+.|..|.||+..+.+ ++
T Consensus 220 gg~d~~v~Iw~~~t~e--------------------------------------------------------------hv 237 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLE--------------------------------------------------------------HV 237 (479)
T ss_pred cCCCceEEEecCcccc--------------------------------------------------------------hh
Confidence 9999999999998876 55
Q ss_pred EEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+.+.+|.+.|.+++|-..- .|++++.|++|++|+++....+.++- |++.|..|.-.. -++.+-+|+.|+++++|++.
T Consensus 238 ~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ 316 (479)
T KOG0299|consen 238 KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIP 316 (479)
T ss_pred hcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecc
Confidence 6678999999999997665 99999999999999999888777655 999999998876 67777777799999999998
Q ss_pred CCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc----cCCCCCeEEEEEeCCCCCe
Q 005646 426 SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK----KAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 426 ~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~I~~l~fsp~~~~~ 501 (686)
....+.+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...++.+.....-.-.. ..+..+|++++..| ...+
T Consensus 317 eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL 394 (479)
T KOG0299|consen 317 EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDL 394 (479)
T ss_pred ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCce
Confidence 8878888889889999999765 4789999999999999988877664433211111 11224899999999 8899
Q ss_pred EEEEeCCCcEEEEeCC------------------cceeEcCCCCEEEEE
Q 005646 502 VMVSCADSQVRILQGP------------------NVIGKYKDGKHIVSA 532 (686)
Q Consensus 502 l~~~s~D~~I~iwd~~------------------~~~~~~~dg~~l~sg 532 (686)
+++|+.+|.||+|-.. +.++|+++|++|++|
T Consensus 395 ~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 395 LASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 9999999999999743 346788899977665
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=230.78 Aligned_cols=245 Identities=19% Similarity=0.295 Sum_probs=193.1
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCcc----------------------------c--------------c
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRS----------------------------K--------------E 236 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~----------------------------~--------------~ 236 (686)
.|++.+ ..|+++|.+||+|+.|+.|+||.+.... . +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 345554 6789999999999999999999976500 0 0
Q ss_pred ccc-----------cccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCC
Q 005646 237 LSA-----------LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305 (686)
Q Consensus 237 ~~~-----------~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (686)
... -.+.+.|.||.+.|.+|.||.++ +|+|++.|.+||+|++...+++..+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----------------- 406 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----------------- 406 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-----------------
Confidence 000 01224678999999999999875 8999999999999999876654433
Q ss_pred CCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECC
Q 005646 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVG 383 (686)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~ 383 (686)
.|...|+|++|+|-+ ++++|+-|+.||||++.
T Consensus 407 ----------------------------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 407 ----------------------------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred ----------------------------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 299999999999965 99999999999999999
Q ss_pred CCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec---c------CCcEEEEEEccC-CCEEEE
Q 005646 384 NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---I------RQIVTAVCYRPD-GQGGIV 453 (686)
Q Consensus 384 ~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---~------~~~V~~v~~spd-g~~l~~ 453 (686)
..+.+.-..-..-|++++|.| +|++.+.|+.+|.+++|+....+++.... + ...||.+.|.|. ...+++
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred cCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 888776666669999999999 99999999999999999999887663221 1 226999999984 346888
Q ss_pred EecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 454 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.+.|..|||||.++..+..... + ......-...+|+. +++.|++++.|..|+||+..
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfK----G--~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFK----G--FRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ecCCCceEEEeccchhhhhhhc----c--cccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence 8999999999997766543221 1 11122345678888 99999999999999999963
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.8e-24 Score=223.56 Aligned_cols=238 Identities=18% Similarity=0.315 Sum_probs=203.1
Q ss_pred Ccceee--ecCCCccceeeccceEEEEEcCCccccccccccCceecc-cCCceEEEEEeeCCCEEEEEeCCCcEEEEEee
Q 005646 204 GEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQA-HDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 204 ~~~~~~--s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~ 280 (686)
..++++ +++|.+|++|..+|.|.|||...... ...+.+ |...|-+++|. +..|.+|+.|+.|..+|+.
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-------~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-------TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccc-------cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 345444 56688999999999999998765433 345666 99999999998 6689999999999999998
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
..+.. ...+.+|...|..+
T Consensus 289 ~~~~~-------------------------------------------------------------~~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 289 ISQHV-------------------------------------------------------------VSTLQGHRQEVCGL 307 (484)
T ss_pred cchhh-------------------------------------------------------------hhhhhcccceeeee
Confidence 76521 12367899999999
Q ss_pred EeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEE--cCCcEEEEecCCCcEEEEeccC
Q 005646 361 SWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 361 ~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~~~ 436 (686)
+|++++ +||+|+.|+.+.|||.....++..+. |...|.+++|+|....+||+|+ .|++|++||..++..+......
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC
Confidence 999999 99999999999999997777776666 9999999999998899999975 6999999999999999999999
Q ss_pred CcEEEEEEccCCCEEEE--EecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 437 QIVTAVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
..|+.|.|++..+.|++ |..++.|.||+..+.+... ...+|..+|..++++|
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~--------~l~gH~~RVl~la~SP------------------ 441 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA--------ELLGHTSRVLYLALSP------------------ 441 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee--------eecCCcceeEEEEECC------------------
Confidence 99999999999877776 5567889999998744332 3567889999999999
Q ss_pred eCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 515 QGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 515 d~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||..|++|+.|.++++|++-+..
T Consensus 442 ----------dg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 442 ----------DGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred ----------CCCEEEEecccCcEEeccccCCC
Confidence 89999999999999999998853
No 87
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.3e-23 Score=197.20 Aligned_cols=238 Identities=15% Similarity=0.241 Sum_probs=184.1
Q ss_pred ceeeecCC-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
..+|++.. ..++.++-|++|++|++..... +.......|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q- 105 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ- 105 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-
Confidence 45677744 4556899999999998876321 2234456799999999999999999999999999999999876
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+..+..|.++|.++.|-+
T Consensus 106 --------------------------------------------------------------~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 106 --------------------------------------------------------------VSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred --------------------------------------------------------------eeeeeecccceeEEEEec
Confidence 344567999999999987
Q ss_pred CC---EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE---EEeccCCc
Q 005646 365 NN---YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV---DWVDIRQI 438 (686)
Q Consensus 365 ~~---~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~~~~ 438 (686)
.. .|+|||.|++|+.||++...++.++.....|.++.. -..+++.+..++.|.+|+++++... .....+-.
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv---~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q 200 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV---LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQ 200 (347)
T ss_pred CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc---cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccce
Confidence 54 899999999999999999999999999999999886 4578899999999999999877543 12235667
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC---CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA---PCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+.+|+..+|....+.|+..|.+-|..+..+.......+..|..... ....|++++|+| .-..|++++.||++.+||
T Consensus 201 ~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 201 TRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred eeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEec
Confidence 8999999999999999999999999998865444444444443221 123567788888 444445555555555554
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.7e-23 Score=200.21 Aligned_cols=247 Identities=19% Similarity=0.329 Sum_probs=203.0
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
-+..|..|.|+|.++.|+.++.||++++|++........
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~----------------------------------------- 50 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK----------------------------------------- 50 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-----------------------------------------
Confidence 356899999999999999999999999999976542221
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCC
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDN 408 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~ 408 (686)
..|..++++++|.++..+++|+.||.|+++|+.++.....-.|..+|.||.+++ ..+
T Consensus 51 ----------------------~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~ 107 (323)
T KOG1036|consen 51 ----------------------FKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVG 107 (323)
T ss_pred ----------------------eecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCC
Confidence 138899999999998899999999999999999999888888999999999999 888
Q ss_pred EEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 409 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
.+++|+.|++|++||.+....+........|.++.. .|..|++|+.+..+.+||+++....... ....-.-.
T Consensus 108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~------reS~lkyq 179 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR------RESSLKYQ 179 (323)
T ss_pred eEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh------ccccceeE
Confidence 999999999999999998777766666677877665 5679999999999999999887654311 11122245
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEe----------------------------CCcceeEcCCCCEEEEEeCCCcEEE
Q 005646 489 ITGFQFLPQDSSKVMVSCADSQVRILQ----------------------------GPNVIGKYKDGKHIVSAGEDSNVYM 540 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~~I~iwd----------------------------~~~~~~~~~dg~~l~sgs~Dg~V~i 540 (686)
+.++++.| ++.-.++++-||+|.+=. ..+.++|+|-.+.||||+.||.|.+
T Consensus 180 tR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~ 258 (323)
T KOG1036|consen 180 TRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI 258 (323)
T ss_pred EEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE
Confidence 88999999 888889999999988743 2355889999999999999999999
Q ss_pred EeCCCCCCCCccccccccccccccC-CcEEEecCCCC
Q 005646 541 WNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCGL 576 (686)
Q Consensus 541 Wd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~ 576 (686)
||+.+.+ .++.+..+.. +.+++|+-+|.
T Consensus 259 Wd~~~rK--------rl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 259 WDLFNRK--------RLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred ccCcchh--------hhhhccCCCCceEEEEeccCCC
Confidence 9998865 6666666644 67777777644
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.6e-24 Score=220.78 Aligned_cols=239 Identities=18% Similarity=0.315 Sum_probs=199.3
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
+++++|++|+.||.|++|+......+.+..+ ...++.|...|..|....+|+.|+++|.|-+|++|+...+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~-~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------ 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPY-IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------ 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccch-hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc------
Confidence 4566899999999999999876555443332 356888999999999999999999999999999999865420
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe-eCCC-EE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW-SKNN-YL 368 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~-s~~~-~L 368 (686)
-...++..|.+.|.||++ .++. ++
T Consensus 108 ------------------------------------------------------~c~stir~H~DYVkcla~~ak~~~lv 133 (735)
T KOG0308|consen 108 ------------------------------------------------------FCMSTIRTHKDYVKCLAYIAKNNELV 133 (735)
T ss_pred ------------------------------------------------------hhHhhhhcccchheeeeecccCceeE
Confidence 133456679999999999 6666 99
Q ss_pred EEEECCCcEEEEECCCCe--eeeEe----------eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEecc
Q 005646 369 LSASIDKTVRLWRVGNDH--CLRVF----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWVDI 435 (686)
Q Consensus 369 ~s~s~Dg~V~iWd~~~~~--~~~~~----------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~ 435 (686)
|+|+-|+.|.|||+.++. .+..+ ++...|++++.++ ++..|++|+..+.||+||.++++. +.+.+|
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGH 212 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH 212 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeecc
Confidence 999999999999999873 23222 2678899999999 889999999999999999999864 478899
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
...|.++..++||+.+++++.||+|++||+...+++.. ...|...|.+++.+|
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T--------~~vH~e~VWaL~~~~------------------- 265 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT--------YIVHKEGVWALQSSP------------------- 265 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee--------EEeccCceEEEeeCC-------------------
Confidence 99999999999999999999999999999988777653 223446699999888
Q ss_pred CCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 516 GPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 516 ~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+-.++.+|+.||.|+.=|+.+..
T Consensus 266 ---------sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 266 ---------SFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ---------CcceEEecCCCCcEEecccCCch
Confidence 77889999999999998888753
No 90
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=2.3e-22 Score=202.99 Aligned_cols=323 Identities=19% Similarity=0.256 Sum_probs=234.9
Q ss_pred ceeeecCC-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
+.++.+.+ ..+++|..+|.|.||+-..... .+...+|.+.|.+++.-.+|. |+||+.|+.|..|| ..-+.
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~-------~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k 319 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTNRI-------SKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRK 319 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCceE-------EeEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccc
Confidence 44444444 3678999999999998643221 223348999999999999996 55599999999999 55566
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+++.++++.....-....+... +........++.. .+.........+|....+.++.+|
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~d----i~vGTtrN~iL~G-----------------t~~~~f~~~v~gh~delwgla~hp 378 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGD----ILVGTTRNFILQG-----------------TLENGFTLTVQGHGDELWGLATHP 378 (626)
T ss_pred cccccCchhcCCeeEEecCCCc----EEEeeccceEEEe-----------------eecCCceEEEEecccceeeEEcCC
Confidence 6666666543322222222221 1111111111100 011123456678999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEE
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVC 443 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~ 443 (686)
+. +|++++.|+.++||+ ..+++.+..-..++.|+.|+| .+ .++.|...|...+.|.++..++......++++++.
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ 454 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVR 454 (626)
T ss_pred ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceEEEE
Confidence 98 999999999999999 677777777889999999999 77 99999999999999999988887766699999999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc----
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---- 519 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---- 519 (686)
|+|+|.+||+|+.|+.|+||-++.+....... .+-+..+|+.+.|++ |++++.+.+.|-.|-.|....+
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~------~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~~t 527 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV------GKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKPSECKQIT 527 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEe------eeecCceeEEeeecC-CCceEEeccCceEEEEEccccCcccc
Confidence 99999999999999999999998776544322 222338899999999 8999999999999999954322
Q ss_pred -----------------------------eeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccC-CcEE
Q 005646 520 -----------------------------IGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTT-NASI 569 (686)
Q Consensus 520 -----------------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v 569 (686)
++.+.+.+.||+|.+.|.|++|...--. ...+...+..+.. ...+
T Consensus 528 s~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s-----~rA~~he~~ghs~~vt~V 602 (626)
T KOG2106|consen 528 SVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS-----PRAPSHEYGGHSSHVTNV 602 (626)
T ss_pred eecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCC-----CcccceeeccccceeEEE
Confidence 1222378899999999999999875432 1122333444444 5566
Q ss_pred EecCC
Q 005646 570 AIPWC 574 (686)
Q Consensus 570 ~~s~~ 574 (686)
+|.|.
T Consensus 603 ~Fl~~ 607 (626)
T KOG2106|consen 603 AFLCK 607 (626)
T ss_pred EEeeC
Confidence 66555
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.5e-23 Score=196.33 Aligned_cols=228 Identities=23% Similarity=0.380 Sum_probs=186.3
Q ss_pred cCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecC-eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 249 HDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVED-ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 249 H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
-...|.+|+||| ...+|+.++.|++||+|+++.. ...
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----------------------------------------- 64 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----------------------------------------- 64 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc-----------------------------------------
Confidence 467899999999 5567778999999999999863 210
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeec
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV 405 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~ 405 (686)
+ .....|.++|++++|+.+| .+++|+.|+.+++||+.+++....-.|.++|.++.|-+
T Consensus 65 -------------------~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~- 123 (347)
T KOG0647|consen 65 -------------------P-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP- 123 (347)
T ss_pred -------------------c-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-
Confidence 1 2234599999999999999 99999999999999999998877777999999999988
Q ss_pred CCC--EEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 406 DDN--YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 406 ~~~--~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
... .|+|||.|.+|+.||.+....+....+.+.+.++..-. .+++++..++.|.+|+++++..++.... .
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~vynL~n~~te~k~~~------S 195 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAVYNLENPPTEFKRIE------S 195 (347)
T ss_pred CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEEEEcCCCcchhhhhc------C
Confidence 555 89999999999999999999999999999988876543 4888999999999999987654332211 1
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------------------------cceeEcCCCCEEEEEeCCCc
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------------------NVIGKYKDGKHIVSAGEDSN 537 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------------------~~~~~~~dg~~l~sgs~Dg~ 537 (686)
...-.+.+++..+ +....+.|+-+|++.|..+. +.++|+|.-..|+|+|.||+
T Consensus 196 pLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 196 PLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT 274 (347)
T ss_pred cccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence 1123478888888 66666999999998887532 34789999999999999999
Q ss_pred EEEEeCCCCC
Q 005646 538 VYMWNCIGHE 547 (686)
Q Consensus 538 V~iWd~~~~~ 547 (686)
+.+||-+...
T Consensus 275 f~FWDkdar~ 284 (347)
T KOG0647|consen 275 FSFWDKDART 284 (347)
T ss_pred EEEecchhhh
Confidence 9999977654
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=4e-23 Score=224.84 Aligned_cols=263 Identities=17% Similarity=0.314 Sum_probs=212.3
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
|...|.+..|. +.++++++.|++|++|+..++..
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~-------------------------------------------- 240 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL-------------------------------------------- 240 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE--------------------------------------------
Confidence 56788899888 55899999999999999988762
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecC
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~ 406 (686)
....+.||.+.|.++++...+ +|++|+.|+++++||+.+++|...+. |.+.|.++...
T Consensus 241 -----------------i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--- 300 (537)
T KOG0274|consen 241 -----------------ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--- 300 (537)
T ss_pred -----------------EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc---
Confidence 223378999999999997644 99999999999999999999999999 99999999984
Q ss_pred CCEEEEEEcCCcEEEEecCCCcEEEEec-cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 407 DNYFISGSIDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
+.++++|+.|.+|++|++.++.++.+.. |..+|.++.++ +.++++|+.||+|++||+.++++.. ...+|
T Consensus 301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~--------sl~gH 370 (537)
T KOG0274|consen 301 PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK--------SLSGH 370 (537)
T ss_pred CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee--------eecCC
Confidence 4788999999999999999999998777 99999999997 7799999999999999999777543 24558
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-eeE-------------cCCCCEEEEEeCCCcEEEEeCCCCCCCCc
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGK-------------YKDGKHIVSAGEDSNVYMWNCIGHEEPAH 551 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-~~~-------------~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~ 551 (686)
..+|+++.+.+ . ..+++|+.|+.|++||..+. .+. ...+++|++++.|++|++||..+++....
T Consensus 371 ~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 371 TGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred cceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee
Confidence 89999998876 3 89999999999999998876 221 12789999999999999999999874433
Q ss_pred cccc---cccccccccCCcEEEecCCCC-cCCCCCCCCccccc
Q 005646 552 DQAK---TIRSLERFTTNASIAIPWCGL-KCGNAEKEPQLHVS 590 (686)
Q Consensus 552 ~~~~---~~~~~~~~~~~~~v~~s~~g~-~~~~~~~g~~l~~~ 590 (686)
.... .+..+ .+.....++-.-+|. ..|++.++.....+
T Consensus 449 ~~~~~~~~v~~l-~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 449 LEGRHVGGVSAL-ALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eccCCcccEEEe-ecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 3332 11111 111112223333343 78999998888766
No 93
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.8e-22 Score=220.39 Aligned_cols=169 Identities=17% Similarity=0.274 Sum_probs=131.5
Q ss_pred CeEEeccCCCCeeEEEeeCC-C-EEEEEECCCcEEEEECCCCe--------eeeEee-CCCCeEEEEEeecCCC-EEEEE
Q 005646 346 PLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGNDH--------CLRVFP-HSNYVTCVHFNPVDDN-YFISG 413 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~--------~~~~~~-h~~~V~~v~fsp~~~~-~l~sg 413 (686)
++..+.+|.+.|.+++|+|+ + +|++|+.|++|+|||+.++. ++..+. |...|++++|+| ++. +|+++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSg 144 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSS 144 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEE
Confidence 45677899999999999997 4 99999999999999997642 233444 999999999999 555 56799
Q ss_pred EcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 414 s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
+.|++|+|||+++++.+....+...|.+++|+|+|++|++++.|+.|+|||++++..... ...|.+.+....
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t--------l~gH~g~~~s~~ 216 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS--------FHIHDGGKNTKN 216 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE--------EecccCCceeEE
Confidence 999999999999998776566778899999999999999999999999999998765431 122333333222
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCC----cEEEEeCCCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDS----NVYMWNCIGH 546 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg----~V~iWd~~~~ 546 (686)
+.. ..+++++++|+|++.|+ +|+|||+.+.
T Consensus 217 v~~-----------------------~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 217 IWI-----------------------DGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEe-----------------------eeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 211 01223788888888764 7999999863
No 94
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=6.4e-23 Score=223.00 Aligned_cols=226 Identities=17% Similarity=0.258 Sum_probs=173.1
Q ss_pred cccCcceeee--c-CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC-CEEEEEeCCCcEEE
Q 005646 201 DKQGEGERVR--L-NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~~~s--~-~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~v 276 (686)
.|.+.+.++. + +++.+++|+.|++|+||++...............+.+|...|.+++|+|++ ++|++|+.|++|+|
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 4666665554 4 556899999999999999865422111112235688999999999999975 69999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++ .+..+.+|...
T Consensus 153 WDl~tg~--------------------------------------------------------------~~~~l~~h~~~ 170 (493)
T PTZ00421 153 WDVERGK--------------------------------------------------------------AVEVIKCHSDQ 170 (493)
T ss_pred EECCCCe--------------------------------------------------------------EEEEEcCCCCc
Confidence 9998765 23455679999
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCC-eEEEEEeecCCCEEEEEE----cCCcEEEEecCCCc-
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY-VTCVHFNPVDDNYFISGS----IDGKVRIWAVLSCH- 428 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~-V~~v~fsp~~~~~l~sgs----~Dg~V~iwd~~~~~- 428 (686)
|.+++|+|++ +|++++.|++|+|||+++++.+..+. |.+. +..+.|.| +++.+++++ .|+.|++||+++..
T Consensus 171 V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred eEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999 99999999999999999999888776 7654 45778888 667777654 47999999998754
Q ss_pred EEEEe--ccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 429 VVDWV--DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 429 ~~~~~--~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.+... .....+....|++++++|++++ .||.|++||+.++++.... ...+..++.+++|.|
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~-------~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS-------SYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe-------eccCCCCCcceEecc
Confidence 33322 2334566678999999999887 4999999999987654321 122345678888888
No 95
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=203.38 Aligned_cols=371 Identities=15% Similarity=0.186 Sum_probs=257.3
Q ss_pred EEeccccchhHHHHHhhccchhhHHHHHHhHHhhcccceeeecccCc-------cee----eecCCCccceeec---cce
Q 005646 159 ENTSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGE-------GER----VRLNEEDAMFCSK---VQR 224 (686)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~----~s~~~~~l~~g~~---d~~ 224 (686)
....+...+++.+.+-...+.++..|++..+.+..+.++|+.....+ ..+ +....+++.+-+. .++
T Consensus 118 ~~~nr~rk~r~~e~e~~~~~~~Y~~RLr~~F~k~~~~PkWA~~~~~~~~~DDe~e~s~d~lL~tt~~yi~s~s~~Lp~~t 197 (514)
T KOG2055|consen 118 KMTNRLRKLRTTENEGLLSGKEYKGRLREQFQKRYPVPKWAKKASGKDSEDDEEEGSLDDLLKTTVGYIDSRSKLLPPGT 197 (514)
T ss_pred hhhhhhhhccccccccccchHHHHHHHHHHHHHhcCCCcccccccccccccccccccHHHHHHhhhcccccccccCCCce
Confidence 33445566666655556677789999999999999988887654331 111 1112222221110 122
Q ss_pred EEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecC
Q 005646 225 VKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNH 304 (686)
Q Consensus 225 v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (686)
+.+-.++. .+.-..-.+.|++|.|+|...+|++||.|++++||.+.....
T Consensus 198 l~~krlkD----------aNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------- 247 (514)
T KOG2055|consen 198 LNIKRLKD----------ANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------- 247 (514)
T ss_pred eeeEeecc----------cccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------
Confidence 22222111 111122357899999999999999999999999999865331
Q ss_pred CCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEEC
Q 005646 305 LSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRV 382 (686)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~ 382 (686)
..++.+.--..+|.+..|.|+| .+++++..+.++.||+
T Consensus 248 ----------------------------------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 248 ----------------------------------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred ----------------------------------------hhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 1234444456789999999999 7999999999999999
Q ss_pred CCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC
Q 005646 383 GNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG 458 (686)
Q Consensus 383 ~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg 458 (686)
.+.+..+.-. ....+.....+| ++++|+..+..|.|.|....+++.+..+...+.|..++|+.||+.|++.+.+|
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred cccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCc
Confidence 9887655433 335677888899 99999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCeeeeeeeEEeeccccCCCCCe--EEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCC
Q 005646 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRI--TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 459 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I--~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg 536 (686)
.|++||++.+.++....- .+.| +.++.++ +|.|||+||.-|
T Consensus 367 eV~v~nl~~~~~~~rf~D---------~G~v~gts~~~S~----------------------------ng~ylA~GS~~G 409 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVD---------DGSVHGTSLCISL----------------------------NGSYLATGSDSG 409 (514)
T ss_pred eEEEEecCCcceEEEEee---------cCccceeeeeecC----------------------------CCceEEeccCcc
Confidence 999999998865432211 1223 3334444 899999999999
Q ss_pred cEEEEeCCCCCCCCccccccccccccccC-CcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccC
Q 005646 537 NVYMWNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES 615 (686)
Q Consensus 537 ~V~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s 615 (686)
.|.|||.++.- ....++++.++..+.+ +..+.|+.++. .|+..... .++ +-.++--.
T Consensus 410 iVNIYd~~s~~--~s~~PkPik~~dNLtt~Itsl~Fn~d~q---------iLAiaS~~-------~kn----alrLVHvP 467 (514)
T KOG2055|consen 410 IVNIYDGNSCF--ASTNPKPIKTVDNLTTAITSLQFNHDAQ---------ILAIASRV-------KKN----ALRLVHVP 467 (514)
T ss_pred eEEEeccchhh--ccCCCCchhhhhhhheeeeeeeeCcchh---------hhhhhhhc-------ccc----ceEEEecc
Confidence 99999987743 4456788888888877 77888877743 22211111 111 11222223
Q ss_pred CCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 616 FPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 616 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
+......||....+. . ...|+ .+++.|..++.|-.+|++++|+-
T Consensus 468 S~TVFsNfP~~n~~v-g------------------~vtc~-aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTKV-G------------------HVTCM-AFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ceeeeccCCCCCCcc-c------------------ceEEE-EecCCCceEEeecCCCceeeEee
Confidence 445567899665441 1 12233 24555889999999999999974
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=2e-22 Score=188.21 Aligned_cols=251 Identities=16% Similarity=0.197 Sum_probs=208.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+..+|..+++|+.|++++||++... ........++|.+.|-.++|+| ...+|++++.|.+|++||+..++++
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT 100 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence 345678899999999999999998765 2233456788999999999998 5679999999999999999998865
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
..+. ..+.-.-+.|+|+
T Consensus 101 ~~i~---------------------------------------------------------------~~~eni~i~wsp~ 117 (313)
T KOG1407|consen 101 ARIE---------------------------------------------------------------TKGENINITWSPD 117 (313)
T ss_pred EEee---------------------------------------------------------------ccCcceEEEEcCC
Confidence 5443 1223346789999
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEE
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVC 443 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~ 443 (686)
| +++.++.|..|...|.++.+.+...+....++-+.|+- ++++|+.....|+|.|.....-+.+ ....|.....||.
T Consensus 118 g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~ 196 (313)
T KOG1407|consen 118 GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIE 196 (313)
T ss_pred CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecC-CCCEEEEecCCceEEEEeccccccccccccCCcceEEEE
Confidence 9 99999999999999999999999998888999999996 8888888888899999999887766 5667888899999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----- 518 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~----- 518 (686)
|+|+|+++|+|+.|-.+.+||+..--+... ...+.-+|..+.|+. ++++|++++.|..|-|-+..+
T Consensus 197 f~p~GryfA~GsADAlvSLWD~~ELiC~R~--------isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 197 FDPDGRYFATGSADALVSLWDVDELICERC--------ISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred ECCCCceEeeccccceeeccChhHhhhhee--------eccccCceEEEEecc-CcceeeccCccceEEeEecccCCeEE
Confidence 999999999999999999999975433221 223456799999999 899999999999998876543
Q ss_pred ---------ceeEcCCCCEEEEEeCC
Q 005646 519 ---------VIGKYKDGKHIVSAGED 535 (686)
Q Consensus 519 ---------~~~~~~dg~~l~sgs~D 535 (686)
.++|+|...+||-+..|
T Consensus 268 eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 268 EIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EeeccCCceeEEecCCCceeeEEecC
Confidence 38899999999988765
No 97
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2e-23 Score=193.14 Aligned_cols=240 Identities=19% Similarity=0.277 Sum_probs=187.7
Q ss_pred eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
+.+.|..++|++.|++|||+....... .+...+|.||.++|+.++|.. -|.+||+++.||.|.||.-.+++-
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-- 92 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-- 92 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch--
Confidence 457789999999999999999876543 233468999999999999976 799999999999999999877641
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
...++...|...|++++|.|.+
T Consensus 93 ----------------------------------------------------------~k~~e~~~h~~SVNsV~waphe 114 (299)
T KOG1332|consen 93 ----------------------------------------------------------TKAYEHAAHSASVNSVAWAPHE 114 (299)
T ss_pred ----------------------------------------------------------hhhhhhhhhcccceeecccccc
Confidence 2345567899999999999986
Q ss_pred ---EEEEEECCCcEEEEECCCC-e-eeeE--eeCCCCeEEEEEeecC--C-----------CEEEEEEcCCcEEEEecCC
Q 005646 367 ---YLLSASIDKTVRLWRVGND-H-CLRV--FPHSNYVTCVHFNPVD--D-----------NYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 367 ---~L~s~s~Dg~V~iWd~~~~-~-~~~~--~~h~~~V~~v~fsp~~--~-----------~~l~sgs~Dg~V~iwd~~~ 426 (686)
.|++++.||.|.|.+.+.. . .... +.|.-.|+++.|.|.. + ..|++|+.|..|+||+..+
T Consensus 115 ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 115 YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence 8999999999999998765 2 2222 2399999999999931 2 5699999999999999988
Q ss_pred CcEE---EEeccCCcEEEEEEccCC----CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 427 CHVV---DWVDIRQIVTAVCYRPDG----QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 427 ~~~~---~~~~~~~~V~~v~~spdg----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
++-+ .+.+|..-|..++|.|.- .+||++++||+|.||-........... + ...-...+..+.|+.
T Consensus 195 ~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t--l---l~~f~~~~w~vSWS~--- 266 (299)
T KOG1332|consen 195 DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKT--L---LEEFPDVVWRVSWSL--- 266 (299)
T ss_pred cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccc--c---cccCCcceEEEEEec---
Confidence 6432 467899999999999953 479999999999999887332222111 1 111335688899998
Q ss_pred CeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 500 SKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.|+.|+.++.|+.|.+|.-+.
T Consensus 267 -------------------------sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 267 -------------------------SGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred -------------------------cccEEEEecCCcEEEEEEeCC
Confidence 677777777777777776544
No 98
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=4.2e-23 Score=207.04 Aligned_cols=239 Identities=21% Similarity=0.345 Sum_probs=192.2
Q ss_pred ccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 248 AHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 248 ~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
-|.+.|+.+.+.|. ...+||.+..+.|.|||..+.........
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~------------------------------------ 165 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG------------------------------------ 165 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc------------------------------------
Confidence 39999999999995 56788889999999999876431111000
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCee-------eeEee-CCCC
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVFP-HSNY 396 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~-------~~~~~-h~~~ 396 (686)
...|-..+.||.+.-.+|+|++.. .|++++.|++|++||+..... ...+. |...
T Consensus 166 ----------------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~ 229 (422)
T KOG0264|consen 166 ----------------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDV 229 (422)
T ss_pred ----------------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcc
Confidence 013566788999988999999976 999999999999999975432 23344 9999
Q ss_pred eEEEEEeecCCCEEEEEEcCCcEEEEecCC--CcEE-EEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLS--CHVV-DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~--~~~~-~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
|..++|+|.+.++|++++.|+.+.|||+|+ .+.. ....|...|.+++|+| ++..||+|+.|++|.+||+++-+..+
T Consensus 230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l 309 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL 309 (422)
T ss_pred eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc
Confidence 999999999999999999999999999995 3332 4557899999999999 66788999999999999998765421
Q ss_pred eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----------------------------eeEc
Q 005646 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-----------------------------IGKY 523 (686)
Q Consensus 473 ~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-----------------------------~~~~ 523 (686)
+ ....|...|..+.|+|.....|++++.|+++.|||.... +.|.
T Consensus 310 ------h-~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 310 ------H-TFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred ------e-eccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCC
Confidence 2 256788999999999999999999999999999996532 3344
Q ss_pred CC-CCEEEEEeCCCcEEEEeCCC
Q 005646 524 KD-GKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 524 ~d-g~~l~sgs~Dg~V~iWd~~~ 545 (686)
|+ .-.|+|.++|+.+.||++..
T Consensus 383 p~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 383 PNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCeEEEEecCCceEEEeeccc
Confidence 44 45678899999999999874
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=194.77 Aligned_cols=238 Identities=20% Similarity=0.286 Sum_probs=197.1
Q ss_pred cccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC--EEEEEeCCCcEEEEE
Q 005646 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ--YLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~I~vWd 278 (686)
-|.+.+.++..++.++|+|+.|.+|+|||..++.. ...+-.|.+.|+++.|.++-. .|++|+.||.|.+|+
T Consensus 41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q-------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ-------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccceeEEEecceeEeccCCCCcEEEEeccchhh-------hcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 35667889999999999999999999999876543 355677999999999998764 899999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.... .+..+++|.+.|+
T Consensus 114 ~~~W~--------------------------------------------------------------~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 114 VGSWE--------------------------------------------------------------LLKSLKAHKGQVT 131 (362)
T ss_pred cCCeE--------------------------------------------------------------Eeeeecccccccc
Confidence 87654 4567788999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
.++.+|.+ +-++.+.|+.+++||+-+|+.-..+.-...-+.|.|+| .+.+|+.++.+ .|-||.+.+..+........
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~ 209 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASVFREIENPK 209 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhHhhhhhccc
Confidence 99999999 77799999999999999998877777555556699999 89988888866 68999999888776666666
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe-CCCCCeEEEEeCCCcEEEEeC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-PQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs-p~~~~~l~~~s~D~~I~iwd~ 516 (686)
.+.++.|. ++..+++|..|+.|.+||........ ...+|..+|.++.+- ..++.+|++++.||.|++||.
T Consensus 210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~--------~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 210 RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLT--------EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred cceeeeec-CCceEEEecCCceEEEeccCCCccce--------eeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 67677665 55689999999999999998744322 256788999999843 336679999999999999997
Q ss_pred Cc
Q 005646 517 PN 518 (686)
Q Consensus 517 ~~ 518 (686)
..
T Consensus 281 ~~ 282 (362)
T KOG0294|consen 281 DM 282 (362)
T ss_pred cc
Confidence 64
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=8.2e-23 Score=213.77 Aligned_cols=262 Identities=18% Similarity=0.299 Sum_probs=207.1
Q ss_pred ecccCcceeeecC-CCccceeeccceEEEEEcCCccccccccccCceecccCCceEE-EEEee-CCCEEEEEeCCCcEEE
Q 005646 200 VDKQGEGERVRLN-EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILT-MKFSP-DGQYLASAGDDGVVRL 276 (686)
Q Consensus 200 ~~~~~~~~~~s~~-~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fsp-dg~~Lasgs~Dg~I~v 276 (686)
..|+.++..+... +..++.++.|++++||.-... .+.....+++|.+-|.+ +++-+ ++..|++|+.|.+|.+
T Consensus 11 ~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~-----~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGK-----QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred ccCccchheeEecCCeEEeecCCCCceeeeeccCc-----ccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 3466666555443 446889999999999974322 22233567789998888 88886 5557999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|.+.+.. |+..|+||...
T Consensus 86 ~~~~~~~--------------------------------------------------------------P~~~LkgH~sn 103 (745)
T KOG0301|consen 86 FKLSQAE--------------------------------------------------------------PLYTLKGHKSN 103 (745)
T ss_pred EecCCCC--------------------------------------------------------------chhhhhccccc
Confidence 9987654 77888999999
Q ss_pred eeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEec
Q 005646 357 ILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWVD 434 (686)
Q Consensus 357 V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~ 434 (686)
|.+++...++.|+|||.|.++++|.. +++...+. |+..|+++++-| .. .++||+.|.+|++|.- +++ ..+.+
T Consensus 104 VC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~g 177 (745)
T KOG0301|consen 104 VCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSG 177 (745)
T ss_pred eeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--Cchhhhhcc
Confidence 99999888889999999999999975 44555566 999999999998 44 8999999999999976 443 36678
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
|...|..+++-|++ .+++++.||.|++|++....+. ...+|..-|+++...+ +...+++++.|+++|||
T Consensus 178 HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~---------~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW 246 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLL---------EMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIW 246 (745)
T ss_pred chhheeeeEEecCC-CeEeecCCceEEEEeccCceee---------eeeccceEEEEEEecC-CCCeEEEecCCceEEEe
Confidence 99999999999886 5778899999999999554332 1456778899999666 67899999999999999
Q ss_pred eCCcceeE--cC----------CCCEEEEEeCCCcEEEEeCCC
Q 005646 515 QGPNVIGK--YK----------DGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 515 d~~~~~~~--~~----------dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+...+.+. .| ...-|++|+.||.||||....
T Consensus 247 ~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 247 KKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 97644321 11 345578899999999998873
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.9e-22 Score=190.21 Aligned_cols=288 Identities=19% Similarity=0.311 Sum_probs=194.6
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee----eeeeccCCCCCcceEEeecCCCCceeeeeccccc
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER----LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKI 318 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (686)
...|++|.+.|++|+|+.||++|||++.|++|+||++..-.. ....+.....+..+.|.++....+..+. ..+..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~-~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK-RGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc-cCCEE
Confidence 457899999999999999999999999999999999876331 1122233345556666665544333332 22222
Q ss_pred eeEEEeeccC---CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-C
Q 005646 319 SILKSLRRTS---ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-H 393 (686)
Q Consensus 319 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h 393 (686)
..+....... ....+-++ .++--+.|.-.|..+-...++ +|++++.|.+|.||++. |+.+..+. .
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D---------~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHID---------NLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEEEeeecccCCCCccccccc---------ccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 2222211111 11111111 111123477777777776666 99999999999999998 88888877 5
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecC---CC------cEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEe
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL---SC------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~---~~------~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd 464 (686)
...-+..+.+| +|+++++++.---|++|.+- .| ++..+.+|...|+.++|+|+.+.+++.+.||+++|||
T Consensus 228 q~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 228 QSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred cccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 56667788999 99999999999999999873 22 2446778999999999999999999999999999999
Q ss_pred CCCCeee-eeeeEE--eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC----------------cceeEcCC
Q 005646 465 VSDNHLE-LDAEIC--VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----------------NVIGKYKD 525 (686)
Q Consensus 465 ~~~~~~~-~~~~~~--~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----------------~~~~~~~d 525 (686)
+.-.-.. +...+. ..............+.++| +++.|+ .+....++++... +++.+.++
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA-~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLA-VSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEE-eecCCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 8632111 000000 0001112233445899999 555544 4455677777533 45889999
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 005646 526 GKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 526 g~~l~sgs~Dg~V~iWd~~~ 545 (686)
|++++|++ |..+++..-..
T Consensus 385 g~~~atcG-dr~vrv~~ntp 403 (420)
T KOG2096|consen 385 GKYIATCG-DRYVRVIRNTP 403 (420)
T ss_pred CcEEeeec-ceeeeeecCCC
Confidence 99999987 66788876433
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.7e-22 Score=210.42 Aligned_cols=227 Identities=22% Similarity=0.342 Sum_probs=178.9
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCC
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
...++..+-...|.+|+..... +..+ ...+...|+++.|+++|.+||+|..+|.|.|||..+.+
T Consensus 187 s~n~laValg~~vylW~~~s~~--v~~l-----~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--------- 250 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASSGS--VTEL-----CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--------- 250 (484)
T ss_pred cCCeEEEEecceEEEEecCCCc--eEEe-----EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc---------
Confidence 3345555667789999865443 1111 22248899999999999999999999999999998765
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc-CCCCeeEEEeeCCCEEEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSWSKNNYLLSA 371 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~L~s~ 371 (686)
.+..+.+ |...|.+++|. ...+.+|
T Consensus 251 -----------------------------------------------------~~~~~~~~h~~rvg~laW~-~~~lssG 276 (484)
T KOG0305|consen 251 -----------------------------------------------------KTRTLRGSHASRVGSLAWN-SSVLSSG 276 (484)
T ss_pred -----------------------------------------------------ccccccCCcCceeEEEecc-CceEEEe
Confidence 2344455 99999999998 4489999
Q ss_pred ECCCcEEEEECCCCeeeeE-ee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-EEEEeccCCcEEEEEEcc-C
Q 005646 372 SIDKTVRLWRVGNDHCLRV-FP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQIVTAVCYRP-D 447 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~-~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~~~~V~~v~~sp-d 447 (686)
+.|+.|..+|++..+.... +. |...|..+.|++ ++++|++|+.|+.+.|||..... .+.+..|...|.+++|+| .
T Consensus 277 sr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 277 SRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred cCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc
Confidence 9999999999998876554 55 999999999999 99999999999999999996554 457889999999999999 5
Q ss_pred CCEEEEE--ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCC
Q 005646 448 GQGGIVG--SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKD 525 (686)
Q Consensus 448 g~~l~~g--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~d 525 (686)
...||+| +.|+.|++||+.++..... ......|..|.|++ .
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~---------vdtgsQVcsL~Wsk----------------------------~ 398 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDS---------VDTGSQVCSLIWSK----------------------------K 398 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEecc---------cccCCceeeEEEcC----------------------------C
Confidence 5677775 5599999999998876542 22336699999999 3
Q ss_pred CCEEEE--EeCCCcEEEEeCCCCC
Q 005646 526 GKHIVS--AGEDSNVYMWNCIGHE 547 (686)
Q Consensus 526 g~~l~s--gs~Dg~V~iWd~~~~~ 547 (686)
.+-|++ |-.++.|.||++.+.+
T Consensus 399 ~kEi~sthG~s~n~i~lw~~ps~~ 422 (484)
T KOG0305|consen 399 YKELLSTHGYSENQITLWKYPSMK 422 (484)
T ss_pred CCEEEEecCCCCCcEEEEeccccc
Confidence 333333 3456789999998743
No 103
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-22 Score=193.59 Aligned_cols=232 Identities=18% Similarity=0.302 Sum_probs=195.6
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
++|.||+..|+.++.......+.|++.|.+.+||.++++.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~---------------------------------------- 181 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA---------------------------------------- 181 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeecccc----------------------------------------
Confidence 5678899999999998877799999999999999999886
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEEC------CC------------
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV------GN------------ 384 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~------~~------------ 384 (686)
++..+.||.+.|++++|++.+ ++++++.|++..||.. ..
T Consensus 182 ----------------------CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 182 ----------------------CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred ----------------------ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 456677999999999999999 9999999999999973 10
Q ss_pred ------------------C----eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEE
Q 005646 385 ------------------D----HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (686)
Q Consensus 385 ------------------~----~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~ 440 (686)
+ .++..+. |...|.+..|.. .++.+++++.|.+..+||++++.++ .+.+|....+
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT 318 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence 0 1223333 889999999998 8999999999999999999999988 5668999999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV- 519 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~- 519 (686)
.++-+|..+++++++.|-+.++||++..- .......+|...|++..|.. ...+++++.|.+|+|||+.+.
T Consensus 319 HcstHptQrLVvTsSrDtTFRLWDFReaI-------~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSSRDTTFRLWDFREAI-------QSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred ccccCCcceEEEEeccCceeEeccchhhc-------ceeeeecccccceeEEEEec--CCceeecCCCceEEEeeecccc
Confidence 99999999999999999999999997321 12223567889999999997 368999999999999997643
Q ss_pred --------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 --------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 --------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++.+..++.|+.--++..|++||++...
T Consensus 390 splATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 390 SPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred CcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 5566677788888888899999998765
No 104
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=7.8e-23 Score=205.94 Aligned_cols=258 Identities=18% Similarity=0.276 Sum_probs=208.9
Q ss_pred ecCCCccceeeccceEEEEEcCCcccc--ccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKE--LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~--~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~ 287 (686)
+....++.||+ .|.|+|||+...... ...+ ....-..-|+++.+.|||+.|++||+-.++.|||+......-
T Consensus 428 S~~trhVyTgG-kgcVKVWdis~pg~k~PvsqL----dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpri- 501 (705)
T KOG0639|consen 428 SNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQL----DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI- 501 (705)
T ss_pred cCCcceeEecC-CCeEEEeeccCCCCCCccccc----cccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcch-
Confidence 34445666665 577999998654221 1111 112345679999999999999999999999999997654211
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~- 366 (686)
..++....-....|+.+||.
T Consensus 502 -----------------------------------------------------------kaeltssapaCyALa~spDak 522 (705)
T KOG0639|consen 502 -----------------------------------------------------------KAELTSSAPACYALAISPDAK 522 (705)
T ss_pred -----------------------------------------------------------hhhcCCcchhhhhhhcCCccc
Confidence 11222233467788999998
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEc
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~s 445 (686)
..+++..||.|.|||+.+...++.|. |.+.+.||..++ ++..|-||+.|.+||-||+++++.+...+....|.++.++
T Consensus 523 vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~c 601 (705)
T KOG0639|consen 523 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYC 601 (705)
T ss_pred eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccC
Confidence 88899999999999999999999998 999999999999 9999999999999999999999988888889999999999
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc------
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------ 519 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------ 519 (686)
|++.++++|..++.+.|-........+ ...|...|.++.|.+ -++++++++.|+-+..|...-.
T Consensus 602 P~~dWlavGMens~vevlh~skp~kyq---------lhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 602 PTGDWLAVGMENSNVEVLHTSKPEKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred CCccceeeecccCcEEEEecCCcccee---------ecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeec
Confidence 999999999999999998876543211 233567899999999 8899999999999999986532
Q ss_pred --------eeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 520 --------IGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 520 --------~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..++.|.+||+||+.|....||.+
T Consensus 672 kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 345569999999999998888875
No 105
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.6e-22 Score=188.33 Aligned_cols=225 Identities=16% Similarity=0.225 Sum_probs=184.6
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceE
Q 005646 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (686)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (686)
-.|+.|++.|.+||+|..||.|.|||+.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~------------------------------------------------- 56 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR------------------------------------------------- 56 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------------------------------------------------
Confidence 7899999999999999999999999998753
Q ss_pred EEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEE
Q 005646 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~ 411 (686)
+-..+.+|..+|.+++||++| .|+|+|.|..|.+||+..+.+++.+....+|+.++|+|.+.+.++
T Consensus 57 -------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 57 -------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV 123 (405)
T ss_pred -------------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence 234567899999999999999 999999999999999999999999999999999999998778777
Q ss_pred EEEcCCcEEEEecCCCcEEEEe-----ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCC
Q 005646 412 SGSIDGKVRIWAVLSCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (686)
Q Consensus 412 sgs~Dg~V~iwd~~~~~~~~~~-----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 486 (686)
+.-.+..-.+-++..+....+. +......+..|.+.|+++++|+..|.+.+||..+.++.....+.. .
T Consensus 124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-------~ 196 (405)
T KOG1273|consen 124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-------V 196 (405)
T ss_pred EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-------h
Confidence 7776666666666553322111 112223345699999999999999999999999887766544432 2
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------------------------cceeEcCCCCEEEEEeC-CCcEE
Q 005646 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------------------NVIGKYKDGKHIVSAGE-DSNVY 539 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------------------~~~~~~~dg~~l~sgs~-Dg~V~ 539 (686)
..|..+.|+. .+..+++.+.|..||.|+.. +.++|+.+|.|++.|+. ...+|
T Consensus 197 ~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 197 QAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 4588889988 88999999999999999854 23678889999998874 46799
Q ss_pred EEeCCCCC
Q 005646 540 MWNCIGHE 547 (686)
Q Consensus 540 iWd~~~~~ 547 (686)
||.-..|.
T Consensus 276 IWE~~~Gs 283 (405)
T KOG1273|consen 276 IWEKSIGS 283 (405)
T ss_pred EEecCCcc
Confidence 99998876
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.8e-23 Score=203.36 Aligned_cols=270 Identities=17% Similarity=0.288 Sum_probs=208.9
Q ss_pred eEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 347 LHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 347 ~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
+..+.||.+.|.+|+=+|.. .+++|+.||.|+|||+.+..|+..|. |.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeee
Confidence 56779999999999999988 89999999999999999999999999 999999999964 7789999999999999
Q ss_pred cCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 424 ~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
+... .+..+.....+..+.-+..+..+++++. .|.|||.....+.....+ ....|.++.|+|.....|+
T Consensus 136 ~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smsw--------G~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSW--------GADSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeeeccccccccccccccccccccCc--eeeecccccCCccceeec--------CCCceeEEecCCCcchhee
Confidence 8764 5566666777888888777788888764 599999976665543332 2255999999998888889
Q ss_pred EEeCCCcEEEEeCC--------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEE
Q 005646 504 VSCADSQVRILQGP--------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASI 569 (686)
Q Consensus 504 ~~s~D~~I~iwd~~--------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v 569 (686)
++..|+.|.+||.. +.++|.|.+-.+++|++|.++|.+|+..-. .++..+..|.+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-------~p~~v~~dhvs---- 273 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-------RPLNVHKDHVS---- 273 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhc-------ccchhhcccce----
Confidence 99999999999964 458999999999999999999999998754 22222222211
Q ss_pred EecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhh
Q 005646 570 AIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLK 649 (686)
Q Consensus 570 ~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (686)
....+.|||- |++|++++-|+++++.+...... ..+-+...|.
T Consensus 274 ------------------------AV~dVdfspt----G~EfvsgsyDksIRIf~~~~~~S-RdiYhtkRMq-------- 316 (433)
T KOG0268|consen 274 ------------------------AVMDVDFSPT----GQEFVSGSYDKSIRIFPVNHGHS-RDIYHTKRMQ-------- 316 (433)
T ss_pred ------------------------eEEEeccCCC----cchhccccccceEEEeecCCCcc-hhhhhHhhhh--------
Confidence 1122356776 88999999999999999665542 1111111111
Q ss_pred cccccCccCCCCceEEEEecCCCeEeEEeec
Q 005646 650 SSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 680 (686)
Q Consensus 650 ~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~~ 680 (686)
...++..+ .+.+.|++|++||.||+|+-+
T Consensus 317 -~V~~Vk~S-~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 317 -HVFCVKYS-MDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred -eeeEEEEe-ccccEEEecCCCcceeeeecc
Confidence 12333333 458999999999999999875
No 107
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=8.1e-22 Score=210.10 Aligned_cols=379 Identities=15% Similarity=0.183 Sum_probs=278.1
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
+.++.|+..|.+++|++++... ..+++++...|+++.=+|-=..+|.|..+|+|.|+++..++.+..+
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~-------v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF----- 240 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKV-------VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF----- 240 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcE-------EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE-----
Confidence 4678899999999999876544 4678899999999999998789999999999999999988754433
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~ 371 (686)
+...+.|+.++|.-|| .|++|
T Consensus 241 ---------------------------------------------------------k~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 241 ---------------------------------------------------------KQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred ---------------------------------------------------------EccccceeEEEeccCCCeeEEec
Confidence 3234899999999999 88999
Q ss_pred ECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC--C--cEE-EEeccCCcEEEEEE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS--C--HVV-DWVDIRQIVTAVCY 444 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~--~--~~~-~~~~~~~~V~~v~~ 444 (686)
+..|.+-+||++..+.+.... |.+.|+.+.|.| ....+++.+.|..+++|=..+ + +.+ ...+|..+..++.|
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRF 342 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheee
Confidence 999999999999998887776 999999999999 899999999999998884443 3 223 44578888888888
Q ss_pred c-cCCCEEEEEecCCcEEEEeCCCCee--------------------------eee------------------------
Q 005646 445 R-PDGQGGIVGSMMGDCRFYNVSDNHL--------------------------ELD------------------------ 473 (686)
Q Consensus 445 s-pdg~~l~~gs~dg~i~iwd~~~~~~--------------------------~~~------------------------ 473 (686)
. .+|..+.+++.|++.+.|++..... ...
T Consensus 343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 7 6888888888888888777631100 000
Q ss_pred --eeEEeecc-----------ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee------------------E
Q 005646 474 --AEICVHSK-----------KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG------------------K 522 (686)
Q Consensus 474 --~~~~~~~~-----------~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~------------------~ 522 (686)
..+..... .+.....+++++.++ -++..+.|...|.|-+|++.+.+. .
T Consensus 423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~ 501 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV 501 (910)
T ss_pred eEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe
Confidence 00000000 011225678888888 789999999999999999876543 2
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCCcccccc-ccccccccCCcEEEecCC--CCcCCCCCCCCcccccCCCCCc--c
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKT-IRSLERFTTNASIAIPWC--GLKCGNAEKEPQLHVSDDDSPE--N 597 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~s~~--g~~~~~~~~g~~l~~~~~~~~~--~ 597 (686)
..-++.+++++.||.+++||+............. +...-.+.....+++..+ .....|..|....+.|.+|... .
T Consensus 502 D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 502 DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 2256789999999999999998866222222111 111111111222333333 4466777788888888888754 5
Q ss_pred cccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCC-CeEeE
Q 005646 598 LAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWD-GRIRS 676 (686)
Q Consensus 598 ~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~D-G~Ir~ 676 (686)
+.|||| +.|+++++.|.++++|+..+...+-.+ .+.+.|..+ .+++.|.+|||+-.| .-|-+
T Consensus 582 ~~FS~D----grWlisasmD~tIr~wDlpt~~lID~~------------~vd~~~~sl-s~SPngD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 582 MTFSPD----GRWLISASMDSTIRTWDLPTGTLIDGL------------LVDSPCTSL-SFSPNGDFLATVHVDQNGIYL 644 (910)
T ss_pred eEeCCC----CcEEEEeecCCcEEEEeccCcceeeeE------------ecCCcceee-EECCCCCEEEEEEecCceEEE
Confidence 688999 788899999999999996655432222 112346665 455669999999999 78999
Q ss_pred Eeec
Q 005646 677 FLNY 680 (686)
Q Consensus 677 w~~~ 680 (686)
|-|.
T Consensus 645 WsNk 648 (910)
T KOG1539|consen 645 WSNK 648 (910)
T ss_pred EEch
Confidence 9984
No 108
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1e-20 Score=195.93 Aligned_cols=260 Identities=14% Similarity=0.167 Sum_probs=188.6
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCeeeeeeccCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
+.+++++.++.+++|+...... .+.+..|. .+.+++|+|+|++| ++++.++.|++||+.+++....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~-------~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----- 68 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEV-------TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT----- 68 (300)
T ss_pred cEEEEecCCCEEEEEECCCCce-------EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-----
Confidence 4567888999999999765321 23344444 46789999999976 5677889999999987653221
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-E
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-S 370 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s 370 (686)
+..+. .+..++|+|++ .|+ +
T Consensus 69 ---------------------------------------------------------~~~~~-~~~~~~~~~~g~~l~~~ 90 (300)
T TIGR03866 69 ---------------------------------------------------------LPSGP-DPELFALHPNGKILYIA 90 (300)
T ss_pred ---------------------------------------------------------ccCCC-CccEEEECCCCCEEEEE
Confidence 11122 24568899998 554 4
Q ss_pred EECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC-cEEEEecCCCcEEEEeccCCcEEEEEEccCCC
Q 005646 371 ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ 449 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg-~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~ 449 (686)
++.|+.|++||+.+.+.+..+.+...+.+++|+| ++.++++++.++ .+.+||..+++..........+..++|+|+|+
T Consensus 91 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 91 NEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGK 169 (300)
T ss_pred cCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCC
Confidence 5668999999999998888887666688999999 999999988775 46778999887765544555678899999999
Q ss_pred EEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE-EeCCCcEEEEeCCc---------
Q 005646 450 GGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV-SCADSQVRILQGPN--------- 518 (686)
Q Consensus 450 ~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~-~s~D~~I~iwd~~~--------- 518 (686)
++++++ .++.|++||+.+++............. .......++.|+| +++.+++ ...++.|.+||..+
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 247 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDYLLV 247 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEe
Confidence 886554 589999999998765432221111100 0112345788999 5665444 45677899998642
Q ss_pred -----ceeEcCCCCEEEEE-eCCCcEEEEeCCCCC
Q 005646 519 -----VIGKYKDGKHIVSA-GEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 -----~~~~~~dg~~l~sg-s~Dg~V~iWd~~~~~ 547 (686)
.+.++|+|++|+++ +.+|.|+|||+.+++
T Consensus 248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 36688999999986 468999999999876
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.9e-21 Score=186.23 Aligned_cols=252 Identities=19% Similarity=0.277 Sum_probs=199.6
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
.+|++..+.|+.++-||.+++|+...... . + .-.|..++++++|.++ ..+++|+.||.|+.+|+.++.
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l--~-----~-~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~--- 86 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSL--K-----L-KFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN--- 86 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhh--h-----h-heecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc---
Confidence 45666678999999999999999876632 1 1 2238999999999974 479999999999999998875
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
...+..|...|.++.+++-.
T Consensus 87 ------------------------------------------------------------~~~igth~~~i~ci~~~~~~ 106 (323)
T KOG1036|consen 87 ------------------------------------------------------------EDQIGTHDEGIRCIEYSYEV 106 (323)
T ss_pred ------------------------------------------------------------ceeeccCCCceEEEEeeccC
Confidence 22344699999999999765
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE---EeccCCcEEEE
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD---WVDIRQIVTAV 442 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~---~~~~~~~V~~v 442 (686)
.+++||.|++|++||.+...+...+.....|.|+.. .++.|+.|+.|..|.+||+++..... ....+-.+.+|
T Consensus 107 ~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v 183 (323)
T KOG1036|consen 107 GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCV 183 (323)
T ss_pred CeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEE
Confidence 999999999999999999878888887889999987 67899999999999999999876543 34566789999
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE--eecccc---CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC--VHSKKK---APCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~--~~~~~~---~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
++-|++..+++++.||.|.+=.+......+..... .|.... ....+|++++|+| -...+++|+.||.|.+||+.
T Consensus 184 ~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 184 ALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred EEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCc
Confidence 99999999999999999888766654222222222 222111 1234799999999 57899999999999999975
Q ss_pred c---------------ceeEcCCCCEEEEEeC
Q 005646 518 N---------------VIGKYKDGKHIVSAGE 534 (686)
Q Consensus 518 ~---------------~~~~~~dg~~l~sgs~ 534 (686)
+ .++|+.||..||+|+.
T Consensus 263 ~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 263 NRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred chhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 3 2567778888888864
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.8e-22 Score=191.45 Aligned_cols=293 Identities=17% Similarity=0.277 Sum_probs=213.1
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
.+.+++.|.+.+||.+..... ..++.||.+.|++|+|++.+.+++|++.|++.+||...-.-.+..-..+...
T Consensus 162 i~gtASADhTA~iWs~Esg~C-------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~h 234 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGAC-------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDH 234 (481)
T ss_pred ceeecccccceeEEeeccccc-------eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCC
Confidence 567789999999997765432 4568899999999999999999999999999999984321111100000000
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~ 373 (686)
..- ... ... +............++..+ ..|+..|.+|.+.|.+..|...+ .+++++.
T Consensus 235 SsE--------eE~---e~s-De~~~d~d~~~~sD~~ti----------RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 235 SSE--------EEE---EHS-DEHNRDTDSSEKSDGHTI----------RVPLMRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred Cch--------hhh---hcc-cccccccccccccCCcee----------eeeeeeeeccccceEehhhhcCcceeeeeec
Confidence 000 000 000 000000000000011011 14788999999999999999988 9999999
Q ss_pred CCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC--cEEEEeccCCcEEEEEEccCCCE
Q 005646 374 DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--HVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~--~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
|.+..+||++++..+..+. |....+.++-+| +.+++++.+.|.+.|+||.+.. .+-.+.+|...|+++.|.-|. .
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~ 370 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-R 370 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-c
Confidence 9999999999999999988 999999999999 9999999999999999999843 233677899999999999876 6
Q ss_pred EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc------------
Q 005646 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN------------ 518 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------ 518 (686)
+++|+.|.+|++||+++..-.+.. + ....+++.++.+. ....++.--.+.+||+||+..
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplAT---I-----RtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLAT---I-----RTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred eeecCCCceEEEeeeccccCccee---e-----ecCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCccccc
Confidence 789999999999999876543211 1 1235688889988 667888888889999999642
Q ss_pred -------ceeEcCC--CCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 -------VIGKYKD--GKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 -------~~~~~~d--g~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.+|..+ -.-|++++.|..+.-|+++.+.
T Consensus 442 gHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 2334332 2457788899999999988754
No 111
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=8.1e-22 Score=216.83 Aligned_cols=246 Identities=20% Similarity=0.288 Sum_probs=200.7
Q ss_pred cccC--cceeeecCCCccceeeccceEEEEEcCC-----------ccccccccccCceecccCCceEEEEEeeCCCEEEE
Q 005646 201 DKQG--EGERVRLNEEDAMFCSKVQRVKVYHCKK-----------RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLAS 267 (686)
Q Consensus 201 ~~~~--~~~~~s~~~~~l~~g~~d~~v~vw~~~~-----------~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las 267 (686)
+|.+ .+.+|++||.+||+|+.|+.|.||.... ..+....+.....|.+|.+.|..++|+|++.+|++
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence 4444 4466789999999999999999999873 12233444455678999999999999999999999
Q ss_pred EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCe
Q 005646 268 AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (686)
Q Consensus 268 gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (686)
+|.|++|.|||..+.+ .+
T Consensus 147 ~s~DnsViiwn~~tF~--------------------------------------------------------------~~ 164 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFE--------------------------------------------------------------LL 164 (942)
T ss_pred ecccceEEEEccccce--------------------------------------------------------------ee
Confidence 9999999999987764 45
Q ss_pred EEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-------CCCCeEEEEEeecCCCEEEEEEc----
Q 005646 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSI---- 415 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-------h~~~V~~v~fsp~~~~~l~sgs~---- 415 (686)
..+.+|.+.|..+.|.|-| +|++-+.|++|+||++..-.+.+.+. ....+..+.|+| ||.+|++...
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~ 243 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGG 243 (942)
T ss_pred eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecchhhccCC
Confidence 6678999999999999999 99999999999999988766666654 346789999999 9999999753
Q ss_pred CCcEEEEecCCCc-EEEEeccCCcEEEEEEcc-----CCC------------EEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 416 DGKVRIWAVLSCH-VVDWVDIRQIVTAVCYRP-----DGQ------------GGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 416 Dg~V~iwd~~~~~-~~~~~~~~~~V~~v~~sp-----dg~------------~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
-.++.|.+-.+-+ -..+.+|..+++++.|+| ..+ .+|+|+.|++|-||.....++.+..
T Consensus 244 ~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--- 320 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--- 320 (942)
T ss_pred cceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh---
Confidence 2468888876666 458899999999999998 111 6788999999999998766554321
Q ss_pred eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
+.-....|.+++|+| ++..|++++.||+|.++...
T Consensus 321 ----~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 321 ----HNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred ----hhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcc
Confidence 222346799999999 89999999999999999743
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.3e-22 Score=214.56 Aligned_cols=279 Identities=17% Similarity=0.245 Sum_probs=207.4
Q ss_pred Ccceeeec--CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEee
Q 005646 204 GEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 204 ~~~~~~s~--~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~ 280 (686)
...++++. +-..++.++ ....+||.+........-......-+.-.-.+..++|.. +.++|||++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 33344443 334444444 445777776554332211111000011112456677865 57799999999999999996
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
.... .+.+..|..|...+.++
T Consensus 119 k~~r-----------------------------------------------------------nk~l~~f~EH~Rs~~~l 139 (839)
T KOG0269|consen 119 KSIR-----------------------------------------------------------NKLLTVFNEHERSANKL 139 (839)
T ss_pred cccc-----------------------------------------------------------chhhhHhhhhccceeee
Confidence 5210 13456677899999999
Q ss_pred EeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EEEecc
Q 005646 361 SWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDI 435 (686)
Q Consensus 361 ~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~ 435 (686)
.|++.. +|++||.||+|++||++..+...++. ....|..|+|+|..+++|+++...|.|++||++.... ..+..|
T Consensus 140 dfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH 219 (839)
T KOG0269|consen 140 DFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH 219 (839)
T ss_pred eeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc
Confidence 999977 99999999999999999988887776 7789999999999999999999999999999997653 467789
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe--CCCcEEE
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC--ADSQVRI 513 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s--~D~~I~i 513 (686)
.++|.++.|+|++.+||+|+.|++|+|||+.+.+......+ + ...+|..+.|-|.....|++++ .|-.|+|
T Consensus 220 ~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--n-----Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 220 NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--N-----TIAPVGRVKWRPARSYHLATCSMVVDTSVHV 292 (839)
T ss_pred cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--e-----ecceeeeeeeccCccchhhhhhccccceEEE
Confidence 99999999999999999999999999999987654433222 2 2267999999997777777766 5889999
Q ss_pred EeCC----------------cceeEcC-CCCEEEEEeCCCcEEEEeCCCCCCC
Q 005646 514 LQGP----------------NVIGKYK-DGKHIVSAGEDSNVYMWNCIGHEEP 549 (686)
Q Consensus 514 wd~~----------------~~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~~~ 549 (686)
||+. +.++|-. |...|.+++.||+|..-.+++...+
T Consensus 293 WDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 293 WDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTP 345 (839)
T ss_pred EeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccCh
Confidence 9965 2344433 6778899999999887777765533
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=194.18 Aligned_cols=223 Identities=19% Similarity=0.279 Sum_probs=193.3
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
..|+++...|....++|||.|..+.++|...++
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q----------------------------------------------- 252 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ----------------------------------------------- 252 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------------------------------
Confidence 468888888877799999999999999987664
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCC
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDN 408 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~ 408 (686)
.+..|.||...|+.+.++|+. .+++++.|..|+||......+..... |..+|+.+..+| ++.
T Consensus 253 ---------------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tge 316 (506)
T KOG0289|consen 253 ---------------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGE 316 (506)
T ss_pred ---------------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCc
Confidence 456778999999999999998 99999999999999998877766666 999999999999 999
Q ss_pred EEEEEEcCCcEEEEecCCCcEEEEeccC---CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 409 YFISGSIDGKVRIWAVLSCHVVDWVDIR---QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 409 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~~---~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
||++++.||+..+.|++++..+....+. -.+++++|+|||..|.+|+.||.++|||+....... +..+|
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a--------~Fpgh 388 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA--------KFPGH 388 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc--------cCCCC
Confidence 9999999999999999999988665553 358999999999999999999999999998765322 34568
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.++|..++|+. ++.+|++++.|+.|++||+.. .+.|.+.|++|+.++.|=+|++++-.+
T Consensus 389 t~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 389 TGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred CCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 89999999999 999999999999999999753 356777999999998887777666443
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.6e-20 Score=179.35 Aligned_cols=264 Identities=17% Similarity=0.215 Sum_probs=202.5
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC--CCcEEEEEeecC
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD--DGVVRLWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I~vWd~~~~ 282 (686)
....|+.+|+.+++++.|..++||+...... ..++..++-.|..++|......++.++. |.+||.-++.+.
T Consensus 18 ~sl~fs~~G~~litss~dDsl~LYd~~~g~~-------~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 18 NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-------VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred eEEEecCCCCEEEEecCCCeEEEEEcCCCce-------eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 3456677888999999999999998765432 3445556778999999877666666665 889999998876
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
+ .++-|.||...|..|+.
T Consensus 91 k--------------------------------------------------------------ylRYF~GH~~~V~sL~~ 108 (311)
T KOG1446|consen 91 K--------------------------------------------------------------YLRYFPGHKKRVNSLSV 108 (311)
T ss_pred c--------------------------------------------------------------eEEEcCCCCceEEEEEe
Confidence 5 56778899999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--EEEEe----cc
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWV----DI 435 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~----~~ 435 (686)
+|-+ .+++++.|++|++||++..+|...+.-.. -..++|.| .|-+||++.....|+|||++.-. ....+ ..
T Consensus 109 sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~ 186 (311)
T KOG1446|consen 109 SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND 186 (311)
T ss_pred cCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC
Confidence 9988 99999999999999999988887776333 24588999 99999999988899999998642 11111 33
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
....+.+.|+|||++++.++..+.+++.|.-++.++........ .... -....|.| +++.+++++.||+|.+|+
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~----~~~~-~~~a~ftP-ds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN----AGNL-PLSATFTP-DSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC----CCCc-ceeEEECC-CCcEEEEecCCCcEEEEE
Confidence 56789999999999999999999999999998886554332211 1111 25678899 899999999999999999
Q ss_pred CCcc----------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 516 GPNV----------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 516 ~~~~----------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+. +.|.| ++..-++.+..+-+|=....+
T Consensus 261 ~~tg~~v~~~~~~~~~~~~~~~fnP--~~~mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 261 LETGKKVAVLRGPNGGPVSCVRFNP--RYAMFVSASSNLVFWLPDEDA 306 (311)
T ss_pred cCCCcEeeEecCCCCCCccccccCC--ceeeeeecCceEEEEeccccc
Confidence 7643 22333 444444556678888766443
No 115
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.7e-21 Score=203.85 Aligned_cols=409 Identities=17% Similarity=0.232 Sum_probs=249.6
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC---EEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ---YLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~---~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
.++.|+.+..|.++.-... ......++.||...|.+|+|..-+. +|||+|+|.+||||.+.-+.......-.
T Consensus 161 lla~Ggs~~~v~~~s~~~d-----~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e 235 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSAD-----SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERE 235 (764)
T ss_pred EEEecCcceEEEEeccCCc-----ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccc
Confidence 4566778888888864421 2233467899999999999987543 8999999999999998755422211100
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS 370 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s 370 (686)
.. .....+ ......+. .-.+++ ..-..+.||.+.|.++.|+|.+ .|++
T Consensus 236 ~~----~t~~~~--------------~~~f~~l~-----------~i~~~i--s~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 236 DS----LTTLSN--------------LPVFMILE-----------EIQYRI--SFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred cc----cccccC--------------Cceeeeee-----------eEEEEE--ehhhhhcCcccceEEEEEccchhhhee
Confidence 00 000000 00000000 000000 0112345999999999999999 9999
Q ss_pred EECCCcEEEEECCCCeee--eE--ee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc----EEEEeccCCc
Q 005646 371 ASIDKTVRLWRVGNDHCL--RV--FP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQI 438 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~~--~~--~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~~~~~ 438 (686)
+|+|+++.+|...+..-+ .. +. .........|+| +++.+++-+.-|-.++|...... .....+|...
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~ 363 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG 363 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence 999999999988765322 22 22 245688999999 99999999999999999843321 2234578899
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
|+.++|+|.|.++++.+.|-+-|+|---..+.. ..-..+.+-|...+++++|-+ ....+++|....-+|+++.+.
T Consensus 364 V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~----wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE----WHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred ceeeeecCCCCEEEEeccccceeeecccccccc----eeeecccccccccceeeehcc-CCceeeecccceeeeeecCcH
Confidence 999999999999999999999999976532221 222334556788899999998 456777777788899998653
Q ss_pred ce----------e-----EcCCCC----------EEEE-EeCCCcE-EEEeCCCC---------CCCCc--cc-------
Q 005646 519 VI----------G-----KYKDGK----------HIVS-AGEDSNV-YMWNCIGH---------EEPAH--DQ------- 553 (686)
Q Consensus 519 ~~----------~-----~~~dg~----------~l~s-gs~Dg~V-~iWd~~~~---------~~~~~--~~------- 553 (686)
.+ + -.|+|- -+.- -.++|.. .+|- ++. +.|.. ++
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~-et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA-ETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee-ecccccCchhccCCChHHHHHHhccchh
Confidence 21 0 011110 0000 0111111 0010 000 00000 00
Q ss_pred ccccc--ccccccCCcEEEecCCCC----------------cCCCCCCCCcccccCCCCC--cccccCCCccccCccccc
Q 005646 554 AKTIR--SLERFTTNASIAIPWCGL----------------KCGNAEKEPQLHVSDDDSP--ENLAFAPARFSLGQEYVF 613 (686)
Q Consensus 554 ~~~~~--~~~~~~~~~~v~~s~~g~----------------~~~~~~~g~~l~~~~~~~~--~~~~~spd~~~~~~~~~~ 613 (686)
.+.+. .+|-| .++++.+|. .+|+..+=.....+.+|+- ..+.|||| +..+++
T Consensus 518 v~KLYGHGyEv~----~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd----g~~LLs 589 (764)
T KOG1063|consen 518 VHKLYGHGYEVY----ALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD----GRYLLS 589 (764)
T ss_pred hHHhccCceeEE----EEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC----CcEEEE
Confidence 01111 12222 222332222 3566555555566777764 46789999 677889
Q ss_pred cCCCCCCCCCCCCcCCC-ccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEeecCCC
Q 005646 614 ESFPKGCATWPEEKLPA-LSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLP 683 (686)
Q Consensus 614 ~s~d~~~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~~g~p 683 (686)
.+.|++..+|...+... ..+. ...+.|.+++.+ |.. +++++.+|||++|-+|++|...-+|
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~f----a~~k~HtRIIWd-csW----~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFRF----ACLKAHTRIIWD-CSW----SPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eecCceEEeeeeecccchhhhh----ccccccceEEEE-ccc----CcccceeEEecCCceEEEEeccCch
Confidence 99999999999543321 1111 112233334443 432 3558889999999999999876554
No 116
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.9e-22 Score=197.17 Aligned_cols=273 Identities=14% Similarity=0.207 Sum_probs=215.1
Q ss_pred cCcceeee--cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEe
Q 005646 203 QGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQV 279 (686)
Q Consensus 203 ~~~~~~~s--~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~ 279 (686)
++.+.+++ +.-..+++++.|++++||.++...... .+.+.--..+|.+.+|.|+|. .++++|.-..++.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-----lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-----LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-----heeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 34455554 455688999999999999998765432 344555678999999999999 9999999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC-CCee
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS-GEIL 358 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~ 358 (686)
.+.+.. ++..+.|+. ..+.
T Consensus 288 e~ak~~------------------------------------------------------------k~~~~~g~e~~~~e 307 (514)
T KOG2055|consen 288 ETAKVT------------------------------------------------------------KLKPPYGVEEKSME 307 (514)
T ss_pred cccccc------------------------------------------------------------cccCCCCcccchhh
Confidence 877621 122223332 3456
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
....++++ +|+..+..|.|.|....+++.+..+..++.|..++|+. ++..|++++.+|.|.+||++...++....-.+
T Consensus 308 ~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G 386 (514)
T KOG2055|consen 308 RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDG 386 (514)
T ss_pred eeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecC
Confidence 67788988 99999999999999999999999999999999999998 89999999999999999999998886555455
Q ss_pred cE--EEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC--CCcEEE
Q 005646 438 IV--TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA--DSQVRI 513 (686)
Q Consensus 438 ~V--~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~--D~~I~i 513 (686)
.| +++|.+++|.+||+|+..|.|.|||..+....... ........-...|+.++|+| +..+|+.++. ...+|+
T Consensus 387 ~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P--kPik~~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 387 SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP--KPIKTVDNLTTAITSLQFNH-DAQILAIASRVKKNALRL 463 (514)
T ss_pred ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC--CchhhhhhhheeeeeeeeCc-chhhhhhhhhccccceEE
Confidence 44 67888899999999999999999997543211110 00001112235699999999 8888887774 678999
Q ss_pred EeCC------------------cceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 514 LQGP------------------NVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 514 wd~~------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.+.+ ++++|+|.+.+||.|.++|.|.+|.+.
T Consensus 464 VHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 464 VHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 8754 458999999999999999999999874
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=197.16 Aligned_cols=228 Identities=18% Similarity=0.257 Sum_probs=181.7
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEee
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTV 302 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 302 (686)
..+.+|.+.+...... .---.++|.+++-+|+|.||+.|+..|.|++|.+.+|..
T Consensus 61 p~l~vw~i~k~~~~~q-------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L------------------ 115 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQ-------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL------------------ 115 (476)
T ss_pred ccccccccCchhhhhh-------hcccccceeeeecCCCceEEEeecccCcEEEEEeccccH------------------
Confidence 3788998876543221 111357899999999999999998999999999999873
Q ss_pred cCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEE
Q 005646 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWR 381 (686)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd 381 (686)
+..+.+|-..|++|.|+.|+ +|+|||.||.|.+|.
T Consensus 116 --------------------------------------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 116 --------------------------------------------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred --------------------------------------------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 33446799999999999999 999999999999998
Q ss_pred CC---------CCeeeeEee-CCCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE
Q 005646 382 VG---------NDHCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 382 ~~---------~~~~~~~~~-h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
+. +-+++..|. |.-+|+.+...+. ...+++|+|.|.++++||+..+.++..+..+..+.+++.+|-++.
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccE
Confidence 73 335677777 9999999998873 357899999999999999999999999999999999999999999
Q ss_pred EEEEecCCcEEEEeCCCCeeeee--------eeEEeeccccCCCC--CeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce
Q 005646 451 GIVGSMMGDCRFYNVSDNHLELD--------AEICVHSKKKAPCK--RITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~~~~~~--------~~~~~~~~~~~~~~--~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~ 520 (686)
+++|+.+|.|.+.++.+-..+.. ..........+|.. .|++++++-
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~------------------------ 287 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST------------------------ 287 (476)
T ss_pred EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec------------------------
Confidence 99999999999998864331110 00000111233433 677777666
Q ss_pred eEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 521 GKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 521 ~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||..|++|++||+|.|||+.+.+
T Consensus 288 ----DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 288 ----DGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred ----CccEEEeeCCCCCEEEEecchHH
Confidence 89999999999999999998765
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.5e-22 Score=214.13 Aligned_cols=233 Identities=19% Similarity=0.305 Sum_probs=188.4
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~ 288 (686)
....+++++++..|.|.+||+.+...+ ...+.|..|+..|+++.|++ ...+|+|||.||+|++||+...+
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rn----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~----- 167 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRN----KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK----- 167 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccc----hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-----
Confidence 456678999999999999999873221 11345778999999999998 46789999999999999998754
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-- 366 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-- 366 (686)
...++.+....|.+++|+|..
T Consensus 168 ---------------------------------------------------------S~~t~~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 168 ---------------------------------------------------------SKSTFRSNSESIRDVKFSPGYGN 190 (839)
T ss_pred ---------------------------------------------------------ccccccccchhhhceeeccCCCc
Confidence 234455677899999999965
Q ss_pred EEEEEECCCcEEEEECCCC-eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EEEeccCCcEEEE
Q 005646 367 YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAV 442 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v 442 (686)
+++++...|.+++||++.. +|...+. |.++|.|+.|+| ++.+||||+.|++|+|||+.+.+. +..+....+|..|
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rV 269 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRV 269 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeee
Confidence 9999999999999999865 5666666 999999999999 999999999999999999987654 3556677899999
Q ss_pred EEccCCCE-EEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 443 CYRPDGQG-GIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 443 ~~spdg~~-l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
.|.|..++ |++++. |-.|+|||++..-+... ....|..-++.++|-..+...+++++.|+.|..-..
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~-------t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA-------TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeeccccccce-------eeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 99997765 444443 67899999986543321 134467789999999888889999999999876543
No 119
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.5e-21 Score=200.93 Aligned_cols=286 Identities=18% Similarity=0.317 Sum_probs=221.4
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..++||++.|.+|...|.|.+||+|+.||+||||.+.++.++..+.+.. .+.|+.|.+.....+.+++.... ..++..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGEC-VLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCc-eEEeCc
Confidence 3578999999999999999999999999999999999999999887765 67788888877776666655544 111111
Q ss_pred eec-------------------cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECC---CcEEEE
Q 005646 324 LRR-------------------TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID---KTVRLW 380 (686)
Q Consensus 324 ~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~D---g~V~iW 380 (686)
..+ ..+...+.|.....+-.++-++..-.|...|..+.|+..| +|++...+ ..|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 100 1112233343332222333456666799999999999999 99887654 679999
Q ss_pred ECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCC
Q 005646 381 RVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMG 458 (686)
Q Consensus 381 d~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg 458 (686)
++.......-|. ..+.|.++.|+| ...+|+.++. ..|||||+..+.++ .+......|..++++|.|..|++|+.|+
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred ecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 998887777775 778999999999 7777777774 57999999987765 4445566789999999999999999999
Q ss_pred cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------------
Q 005646 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------------- 517 (686)
Q Consensus 459 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------------- 517 (686)
.+..||+.-..-. ....+.|...++.++|++ .-.++++++.|+++.|+.+.
T Consensus 630 k~~WfDldlsskP-------yk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 630 KMCWFDLDLSSKP-------YKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred eeEEEEcccCcch-------hHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 9999999755322 122456778899999999 67899999999999998632
Q ss_pred -c------ceeEcCCCCEEEEEeCCCcEEEE
Q 005646 518 -N------VIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 518 -~------~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
+ ...|+|...+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 0 13489999999999999999999
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.2e-21 Score=185.74 Aligned_cols=300 Identities=18% Similarity=0.318 Sum_probs=212.7
Q ss_pred cccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 247 QAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 247 ~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
+.|.+.|+++...+ .|+|+++|+.||.|.|||++.......-.. +.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-----------------------------i~---- 86 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-----------------------------IA---- 86 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-----------------------------ee----
Confidence 34899999999988 699999999999999999976541110000 00
Q ss_pred ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEe
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fs 403 (686)
...|++ ....-.+|.-.|.++.|-|-. .+.++|.|.++++||..+.+....|..++.|.+-+++
T Consensus 87 ---k~~c~v-----------~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamS 152 (397)
T KOG4283|consen 87 ---KHKCIV-----------AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMS 152 (397)
T ss_pred ---heeeec-----------cccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcC
Confidence 000000 011224799999999999954 9999999999999999999999999999999999999
Q ss_pred ecC--CCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCE-EEEEecCCcEEEEeCCCCe--eee-e---
Q 005646 404 PVD--DNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQG-GIVGSMMGDCRFYNVSDNH--LEL-D--- 473 (686)
Q Consensus 404 p~~--~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~-l~~gs~dg~i~iwd~~~~~--~~~-~--- 473 (686)
|.. ..++++|..|-+||+-|+.++..- .+.+|+..|.++.|+|...+ |++|+.||.|++||++... +.. .
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 943 357888888999999999999876 67789999999999997775 6779999999999997541 110 0
Q ss_pred -eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCcc
Q 005646 474 -AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHD 552 (686)
Q Consensus 474 -~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~ 552 (686)
..........+|.+.+.+++|.. ||.++++.+.|..+++|+...++.....
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tS----------------------------d~~~l~~~gtd~r~r~wn~~~G~ntl~~ 284 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTS----------------------------DARYLASCGTDDRIRVWNMESGRNTLRE 284 (397)
T ss_pred CccCccccccccccceeeeeeecc----------------------------cchhhhhccCccceEEeecccCcccccc
Confidence 00111112456778888888888 8999999999999999998887743332
Q ss_pred ccccccc--------cccccCCcEEEecCCCC-cCCCCCCCCcccccCCCCCccc--ccCCCccccCccccccCCCCCCC
Q 005646 553 QAKTIRS--------LERFTTNASIAIPWCGL-KCGNAEKEPQLHVSDDDSPENL--AFAPARFSLGQEYVFESFPKGCA 621 (686)
Q Consensus 553 ~~~~~~~--------~~~~~~~~~v~~s~~g~-~~~~~~~g~~l~~~~~~~~~~~--~~spd~~~~~~~~~~~s~d~~~~ 621 (686)
..+.++. .........+.++.++. .+.+.-.|..+..+..|...+. +|-|+ =+..++...+..+.
T Consensus 285 ~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~----fq~~~tg~~d~ni~ 360 (397)
T KOG4283|consen 285 FGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPD----FEQCFTGDMNGNIY 360 (397)
T ss_pred cccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCc----hhhhhccccCCccc
Confidence 2211111 01111134445555433 4455566888888887765554 35666 34456777888888
Q ss_pred CCCC
Q 005646 622 TWPE 625 (686)
Q Consensus 622 ~W~~ 625 (686)
.|.-
T Consensus 361 ~w~p 364 (397)
T KOG4283|consen 361 MWSP 364 (397)
T ss_pred cccc
Confidence 8873
No 121
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.8e-21 Score=202.37 Aligned_cols=267 Identities=19% Similarity=0.333 Sum_probs=210.3
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEE-eeCCCEEEEEeCCCcEEEEEeecCee--eee
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKF-SPDGQYLASAGDDGVVRLWQVVEDER--LTE 287 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~Lasgs~Dg~I~vWd~~~~~~--~~~ 287 (686)
.+++.+++++.|-+|++|+..+.. .....++..|+.-|.|+++ -++..++||||-|+.|.|||++++.. +..
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s 157 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS 157 (735)
T ss_pred cCCCceEEecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh
Confidence 456789999999999999876543 1234568889999999999 78899999999999999999998742 111
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec-cCCCCeeEEEeeCCC
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~ 366 (686)
+.. .....+. |+...|++++-++.+
T Consensus 158 ~n~------------------------------------------------------~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 158 FNN------------------------------------------------------VTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred ccc------------------------------------------------------cccccCCCCCccceeeeecCCcc
Confidence 110 1122223 799999999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEE
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVC 443 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~ 443 (686)
.+++|+..+.+++||.++++.+..+. |...|.++..++ ++..+++++.||+|++||+...+++ .+..|...|.++.
T Consensus 184 t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~ 262 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ 262 (735)
T ss_pred eEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence 99999999999999999998877776 999999999999 9999999999999999999999887 5667888999999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCe-eeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee-
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNH-LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG- 521 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~- 521 (686)
.+|+=+.+++|+.||.|..=|+++.. ..+ ++ ....+|..+..+..+ +-+-+++.|+.|+-|-..-..+
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tl---ic------k~daPv~~l~~~~~~-~~~WvtTtds~I~rW~~~~~~~l 332 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTDLRNPAKSTL---IC------KEDAPVLKLHLHEHD-NSVWVTTTDSSIKRWKLEPDIAL 332 (735)
T ss_pred eCCCcceEEecCCCCcEEecccCCchhheE---ee------cCCCchhhhhhcccc-CCceeeeccccceecCCcccccc
Confidence 99999999999999999999998742 111 11 112445556665422 3347777888888885431111
Q ss_pred --------------------------------------EcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 522 --------------------------------------KYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 522 --------------------------------------~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.-.|.++++|=..+|++.+||+-...
T Consensus 333 ~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~ 396 (735)
T KOG0308|consen 333 SVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACV 396 (735)
T ss_pred ccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeee
Confidence 11188999999999999999997654
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5e-22 Score=183.87 Aligned_cols=210 Identities=22% Similarity=0.371 Sum_probs=171.8
Q ss_pred cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
..|+..|..+...--|+.|||++.|++|+|+.+..+..
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 46999999998888899999999999999999876541
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC--CC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEE
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCV 400 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v 400 (686)
.+++.+|.||.++|..++|.. -| +|++++.||.|.||.-.+++-.+... |...|++|
T Consensus 46 -----------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV 108 (299)
T KOG1332|consen 46 -----------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSV 108 (299)
T ss_pred -----------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceee
Confidence 136788999999999999976 45 99999999999999998886544433 99999999
Q ss_pred EEeecC-CCEEEEEEcCCcEEEEecCCC-c---EEEEeccCCcEEEEEEccC---C-----------CEEEEEecCCcEE
Q 005646 401 HFNPVD-DNYFISGSIDGKVRIWAVLSC-H---VVDWVDIRQIVTAVCYRPD---G-----------QGGIVGSMMGDCR 461 (686)
Q Consensus 401 ~fsp~~-~~~l~sgs~Dg~V~iwd~~~~-~---~~~~~~~~~~V~~v~~spd---g-----------~~l~~gs~dg~i~ 461 (686)
+|.|.. +-.|++++.||+|.|.+.++. . ......|.-.|++++|.|. | +.|++|+.|..|+
T Consensus 109 ~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 109 AWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK 188 (299)
T ss_pred cccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence 999943 457889999999999998765 1 2234568888999999995 5 5699999999999
Q ss_pred EEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEE
Q 005646 462 FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 462 iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
||+...+..... .....|...|..++|.|..+- -..+||++|.||+|.||
T Consensus 189 iW~~~~~~w~~e------~~l~~H~dwVRDVAwaP~~gl------------------------~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 189 IWKFDSDSWKLE------RTLEGHKDWVRDVAWAPSVGL------------------------PKSTIASCSQDGTVIIW 238 (299)
T ss_pred eeecCCcchhhh------hhhhhcchhhhhhhhccccCC------------------------CceeeEEecCCCcEEEE
Confidence 999988754432 225668899999999994211 23689999999999999
Q ss_pred eCCC
Q 005646 542 NCIG 545 (686)
Q Consensus 542 d~~~ 545 (686)
....
T Consensus 239 t~~~ 242 (299)
T KOG1332|consen 239 TKDE 242 (299)
T ss_pred EecC
Confidence 9874
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=9.7e-21 Score=198.21 Aligned_cols=308 Identities=18% Similarity=0.243 Sum_probs=213.2
Q ss_pred CccceeeccceEEEEEcCCccccc-----------------cccccC-------ceecccCCceEEEEEeeCCCEEEEEe
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKEL-----------------SALYKG-------QEIQAHDGSILTMKFSPDGQYLASAG 269 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~-----------------~~~~~~-------~~l~~H~~~I~~l~fspdg~~Lasgs 269 (686)
-++++++.|..|+||.+.-...+- ..+... ..+.||+..|.++.|+|.+..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 378899999999999875432100 000000 12459999999999999999999999
Q ss_pred CCCcEEEEEeecCe--eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeC---CccccccC
Q 005646 270 DDGVVRLWQVVEDE--RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP---PKVFRILE 344 (686)
Q Consensus 270 ~Dg~I~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 344 (686)
.|.++.+|...+.. -...+...+..... .......+.+.....+. .+..+....|. ...|
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a--------~GF~g~lw~~n~~~ii~---~g~~Gg~hlWkt~d~~~w---- 351 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSA--------GGFWGGLWSPNSNVIIA---HGRTGGFHLWKTKDKTFW---- 351 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccccc--------cceeeEEEcCCCCEEEE---ecccCcEEEEeccCccce----
Confidence 99999999876542 22222222111111 01111222222211111 11112222222 1111
Q ss_pred CCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe-eeeEee----CCCCeEEEEEeecCCCEEEEEEcCCc
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-CLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGK 418 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~-~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~ 418 (686)
.+...+.||.+.|.+++|+|.| +|++.|.|.|-||+-.-..+ .-..+. |...++|++|-+ ....|++|.....
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKV 430 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeeccccee
Confidence 2344567999999999999999 99999999999998654221 122222 899999999998 6888999999999
Q ss_pred EEEEecCC-------------------------------------------C----------------------------
Q 005646 419 VRIWAVLS-------------------------------------------C---------------------------- 427 (686)
Q Consensus 419 V~iwd~~~-------------------------------------------~---------------------------- 427 (686)
+|+|+... +
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 99997632 0
Q ss_pred ------cEEEEeccCCcEEEEEEccCCCEEEEEecCC-----cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 428 ------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG-----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 428 ------~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
++..+++|...|++++.+|+|+.+|+++... .|++|+..+-.... ....|.-.|+.++|+|
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~--------~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ--------ELEGHSLTVTRLAFSP 582 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh--------eecccceEEEEEEECC
Confidence 0112446677799999999999999987654 49999987655432 2345677899999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCcc-------------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 497 QDSSKVMVSCADSQVRILQGPNV-------------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 497 ~~~~~l~~~s~D~~I~iwd~~~~-------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
++++|++.+.|.++.+|..... ..|.|++++++|+|.|.+|+||.....
T Consensus 583 -dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 583 -DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred -CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 8999999999999999975321 357889999999999999999999876
No 124
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=9.7e-22 Score=196.28 Aligned_cols=241 Identities=17% Similarity=0.253 Sum_probs=183.9
Q ss_pred CCCccceeeccceEEEEEcCCccccccccc--------------cCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEE
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALY--------------KGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRL 276 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~--------------~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~v 276 (686)
.|+++|.|+.+..|.|||+.-...-+..+. ....-.+|+..|..|+|+.+ .+.|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 467999999999999999864332211111 11223579999999999885 568999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++ |...+..|.+.
T Consensus 271 WD~~~g~--------------------------------------------------------------p~~s~~~~~k~ 288 (463)
T KOG0270|consen 271 WDVDTGK--------------------------------------------------------------PKSSITHHGKK 288 (463)
T ss_pred EEcCCCC--------------------------------------------------------------cceehhhcCCc
Confidence 9999986 44555679999
Q ss_pred eeEEEeeCCC--EEEEEECCCcEEEEECCCC-eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC-cEE-E
Q 005646 357 ILDLSWSKNN--YLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVV-D 431 (686)
Q Consensus 357 V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~-~~~-~ 431 (686)
|.+++|+|.. .|++|+.|++|.+.|.+.. ..-..++..+.|-.++|+|.....|+++..||+|+-+|+|.. +.+ .
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence 9999999987 9999999999999999843 334456678999999999988899999999999999999976 444 6
Q ss_pred EeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 432 WVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 432 ~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
...|..+|.+|++++.- .++++++.|+.|++|++.......... +....++..|+++.|+.
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~------~~~~~~rl~c~~~~~~~------------ 430 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE------HSFKLGRLHCFALDPDV------------ 430 (463)
T ss_pred EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc------ccccccceeecccCCCc------------
Confidence 77899999999999854 468889999999999997654432111 11112346778888853
Q ss_pred EEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 511 VRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 511 I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.-+|+.|+..+.++|||+.+..
T Consensus 431 ---------------a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 431 ---------------AFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ---------------ceEEEecCccceEEEeecccCh
Confidence 3445556666666666666543
No 125
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2.8e-21 Score=189.11 Aligned_cols=221 Identities=24% Similarity=0.346 Sum_probs=176.6
Q ss_pred ecccCCceEEEEEeeCC--CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 246 IQAHDGSILTMKFSPDG--QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+|.+.|+.+.-++-| .+.|+-++.|.|+||++...- ..+..+...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~~~~~~----------------------------- 195 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALSEPGLE----------------------------- 195 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhcCcccc-----------------------------
Confidence 34688888888887754 477778899999999986422 111100000
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--CEEEEEECCCcEEEEECCCCeeee----EeeCCCCe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGNDHCLR----VFPHSNYV 397 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~L~s~s~Dg~V~iWd~~~~~~~~----~~~h~~~V 397 (686)
+-+...+|+.++.+|.+.=+.|.|||- |.|++|..-+.|++|...++.... ...|+..|
T Consensus 196 ---------------~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SV 260 (440)
T KOG0302|consen 196 ---------------VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSV 260 (440)
T ss_pred ---------------ccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccch
Confidence 000113689999999999999999994 489999999999999999876432 22399999
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEecCCC---cEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeee
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSC---HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~---~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~ 474 (686)
..++|+|.....|++||-||+|+|||+|.+ .++....|...|+.|.|+.+-.+||+|+.||+++|||++.-+...
T Consensus 261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~-- 338 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ-- 338 (440)
T ss_pred hhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC--
Confidence 999999988899999999999999999988 567778899999999999988899999999999999998755431
Q ss_pred eEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 475 ~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.....+.|..+|+++.|+|.+...+++++.|.+|.|||+.
T Consensus 339 ---pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 339 ---PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ---cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 1112456789999999999999999999999999999953
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=4.1e-21 Score=182.07 Aligned_cols=283 Identities=18% Similarity=0.261 Sum_probs=206.2
Q ss_pred eeecccCcceeeecC---CCccceeeccceEEEEEcCCcc-ccccccc-------cCceecccCCceEEEEEee-CCCEE
Q 005646 198 CVVDKQGEGERVRLN---EEDAMFCSKVQRVKVYHCKKRS-KELSALY-------KGQEIQAHDGSILTMKFSP-DGQYL 265 (686)
Q Consensus 198 ~~~~~~~~~~~~s~~---~~~l~~g~~d~~v~vw~~~~~~-~~~~~~~-------~~~~l~~H~~~I~~l~fsp-dg~~L 265 (686)
..-.|.+.++++..+ +.++++|+.||.|.|||++... .+.+.+. ..+.-.+|+-.|.++.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 334677778777644 5799999999999999997654 1211111 1223357889999999999 66688
Q ss_pred EEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCC
Q 005646 266 ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (686)
Q Consensus 266 asgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (686)
.+++.|.+++|||.++.+....++
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-------------------------------------------------------- 141 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-------------------------------------------------------- 141 (397)
T ss_pred ecccccceEEEeecccceeeEEee--------------------------------------------------------
Confidence 999999999999999877444333
Q ss_pred CeEEeccCCCCeeEEEeeCC---C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 346 PLHEFHGHSGEILDLSWSKN---N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~---~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
-.+.|..-+++|- . ++|+|..|-.|++-|+.+|.+...+. |.+.|.++.|+|...-.|++|+.||.||
T Consensus 142 -------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 142 -------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred -------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence 2234555556653 2 78888899999999999999999998 9999999999997777899999999999
Q ss_pred EEecCCC-cEE---------------EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE-eecccc
Q 005646 421 IWAVLSC-HVV---------------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC-VHSKKK 483 (686)
Q Consensus 421 iwd~~~~-~~~---------------~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~-~~~~~~ 483 (686)
+||++.. -+. .-..|.+.|..++|+.||.++++.+.|..+++|+...+.-....... .+....
T Consensus 215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~ 294 (397)
T KOG4283|consen 215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT 294 (397)
T ss_pred EEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc
Confidence 9999854 111 12346677999999999999999999999999999876543221111 111111
Q ss_pred CCC-----CCeEEEEEeCCCCC-eEEEEeCCCcEEEEeCC----cceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 484 APC-----KRITGFQFLPQDSS-KVMVSCADSQVRILQGP----NVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 484 ~~~-----~~I~~l~fsp~~~~-~l~~~s~D~~I~iwd~~----~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
... ..-.-+.+.|.++. .|+.......|+.|+.. ++..+-++-+...+|..|+.|+.|-.
T Consensus 295 ~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 295 SFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 110 11122445564443 45556677788999865 34556678889999999999999987
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=194.57 Aligned_cols=222 Identities=20% Similarity=0.266 Sum_probs=182.2
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
+...++.|.+++.|+..+.+++|.+.... ....+.+|=.+|+|+.|+-||.+|+|||.||.|++|.+..--.
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~-------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~- 157 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGI-------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS- 157 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEecccc-------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc-
Confidence 34445677788888899999999665543 3456788999999999999999999999999999999854210
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
.+. +...+|++.|..|.-+|+++...+.
T Consensus 158 ----------------a~~------------------------------------~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 158 ----------------ADN------------------------------------DHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred ----------------ccc------------------------------------CCCccceeeeccCcceeEEEEecCC
Confidence 000 0012689999999999999999876
Q ss_pred C---EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--------------
Q 005646 366 N---YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-------------- 428 (686)
Q Consensus 366 ~---~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-------------- 428 (686)
+ +|+|+|.|.++++||+..+..+.++.....+++++..| .+..++.|+.+|.|.+.++.+-.
T Consensus 186 g~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 186 GTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE 264 (476)
T ss_pred CccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence 5 99999999999999999999999999999999999999 89999999999999998875322
Q ss_pred ---EEEEeccCC--cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 429 ---VVDWVDIRQ--IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 429 ---~~~~~~~~~--~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
...+.+|.. .|+|++++-||..|++|+.||.++|||+...++..... ...++|+-+++.|
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~--------~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ--------TSKGPVTNLQINP 329 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh--------hhccccceeEeec
Confidence 224556776 89999999999999999999999999998776543221 1337799999977
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=2.2e-20 Score=199.33 Aligned_cols=326 Identities=16% Similarity=0.203 Sum_probs=241.3
Q ss_pred Ccc--eeeecCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee
Q 005646 204 GEG--ERVRLNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 204 ~~~--~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~ 280 (686)
+.+ .+|+.||. .+++|+..|.+.+||+++.... .+...+|.+.|..+.|-|....|+|++.|..+++|=.+
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~------~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI------NVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee------eeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 444 45666786 6677888899999999876542 23344799999999999999999999999999999777
Q ss_pred cCe----eeeeeccCCCCCcceEEeecCCCCceeeeecc--------------ccce----------e-----------E
Q 005646 281 EDE----RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK--------------EKIS----------I-----------L 321 (686)
Q Consensus 281 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~----------~-----------~ 321 (686)
++. .++....+..++.|+.|.......+.....+. .... . +
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 543 34455667778888876533222111111110 0000 0 0
Q ss_pred EEee--ccC-----CceEEEeCC---ccccccCCCe--EEe-----ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECC
Q 005646 322 KSLR--RTS-----ESACVVFPP---KVFRILEKPL--HEF-----HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG 383 (686)
Q Consensus 322 ~~~~--~~~-----~~~~~~~~~---~~~~~~~~~~--~~l-----~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~ 383 (686)
..+. ... +..+...+. ..|+...+.. +.+ +.-...+++++.++.| +.+.|+..|+|-+|+++
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 0000 000 000000000 1122222221 111 1234678899999999 88899999999999999
Q ss_pred CCeeeeEe----eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCc
Q 005646 384 NDHCLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD 459 (686)
Q Consensus 384 ~~~~~~~~----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~ 459 (686)
+|-....| .|..+|+.++... .++.+++++.+|-+.+||..+...+........++++.++.....++++..|-.
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~ 557 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFS 557 (910)
T ss_pred cCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCcee
Confidence 99988888 3999999999987 788999999999999999999998888888999999999999999999999999
Q ss_pred EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc--------------eeEcCC
Q 005646 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--------------IGKYKD 525 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~--------------~~~~~d 525 (686)
|+++|+.+.+... ...+|..+|+++.|+| ++++|++++.|++||+||+++. +.++|+
T Consensus 558 I~vvD~~t~kvvR--------~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn 628 (910)
T KOG1539|consen 558 IRVVDVVTRKVVR--------EFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN 628 (910)
T ss_pred EEEEEchhhhhhH--------HhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence 9999998876543 3567889999999999 9999999999999999998753 679999
Q ss_pred CCEEEEEeCC-CcEEEEeCCC
Q 005646 526 GKHIVSAGED-SNVYMWNCIG 545 (686)
Q Consensus 526 g~~l~sgs~D-g~V~iWd~~~ 545 (686)
|.+|||...| .-|++|.-.+
T Consensus 629 gD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCEEEEEEecCceEEEEEchh
Confidence 9999999999 6699997554
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.5e-20 Score=179.58 Aligned_cols=214 Identities=19% Similarity=0.268 Sum_probs=159.2
Q ss_pred cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
.+|..-|+++.|.+.|+.+|||+.|++|+|||.......-
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---------------------------------------- 49 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---------------------------------------- 49 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce----------------------------------------
Confidence 4699999999999999999999999999999975433100
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC---EEEEEECCCcEEEEECCCC-------e--eeeEee-C
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGND-------H--CLRVFP-H 393 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~-------~--~~~~~~-h 393 (686)
......+.|.+.|..+.|.+.. .+|+++.|+++.||.-... + ...++. .
T Consensus 50 ------------------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds 111 (361)
T KOG2445|consen 50 ------------------SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS 111 (361)
T ss_pred ------------------EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC
Confidence 1234567899999999997653 8999999999999976211 1 122333 6
Q ss_pred CCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCCCcEE-E-------------EeccCCcEEEEEEcc---CCCEEEEEe
Q 005646 394 SNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVV-D-------------WVDIRQIVTAVCYRP---DGQGGIVGS 455 (686)
Q Consensus 394 ~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~-~-------------~~~~~~~V~~v~~sp---dg~~l~~gs 455 (686)
...|+.|.|.|. -+-.|++++.||.||||+....--+ . .-.+..+..|+.|+| ...+||+|+
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs 191 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS 191 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence 789999999994 3668999999999999988654211 1 112456678999998 456888887
Q ss_pred cC-----CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEE
Q 005646 456 MM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIV 530 (686)
Q Consensus 456 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~ 530 (686)
.+ +.++||....+........ ....|..+|++++|.|.-+. ....||
T Consensus 192 ~e~a~~~~~~~Iye~~e~~rKw~kva----~L~d~~dpI~di~wAPn~Gr------------------------~y~~lA 243 (361)
T KOG2445|consen 192 DEDAPHLNKVKIYEYNENGRKWLKVA----ELPDHTDPIRDISWAPNIGR------------------------SYHLLA 243 (361)
T ss_pred ccCCccccceEEEEecCCcceeeeeh----hcCCCCCcceeeeeccccCC------------------------ceeeEE
Confidence 76 5788998766543222111 23367899999999994322 457899
Q ss_pred EEeCCCcEEEEeCCCCC
Q 005646 531 SAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 531 sgs~Dg~V~iWd~~~~~ 547 (686)
+++.|| |+||++....
T Consensus 244 vA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVAR 259 (361)
T ss_pred EeecCc-EEEEEEeecc
Confidence 999999 9999998643
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.6e-21 Score=193.21 Aligned_cols=158 Identities=24% Similarity=0.362 Sum_probs=127.8
Q ss_pred eccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 350 FHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 350 l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
..+|+..|.+|+|+..- .|||||.|++|++||+.+++|...+. |.+.|.+++|+|....+|++|+.|++|++.|.|.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 45799999999998765 99999999999999999999999999 8999999999998999999999999999999995
Q ss_pred CcE-EEEeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCe-eeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 427 CHV-VDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNH-LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 427 ~~~-~~~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
... -......+.|..++|.|.. ..+++++.||+++-+|++... +.. ..++|...|.++.+++..+.+++
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw--------t~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW--------TLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee--------EEEeccCCcceEEecCCCCccee
Confidence 332 2445567889999999954 567788899999999998763 222 24568889999999996444444
Q ss_pred EEeCCCcEEEEe
Q 005646 504 VSCADSQVRILQ 515 (686)
Q Consensus 504 ~~s~D~~I~iwd 515 (686)
+++.|+.|++|+
T Consensus 391 t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 391 TASTDKVVKLWK 402 (463)
T ss_pred eccccceEEEEe
Confidence 444444444443
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.3e-20 Score=179.94 Aligned_cols=257 Identities=20% Similarity=0.276 Sum_probs=188.4
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEEEEeecCe
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
...|.+.|+++++++.|++|+||+..+.. .........++|.+.|+.+.|.+ -|+.+|+++.|+++.||.-....
T Consensus 18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s---~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 18 DVSFDFYGRRMATCSSDQTVKIWDSTSDS---GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeecccCceeeeccCCCcEEEEeccCCC---CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 35677889999999999999999975533 23344556789999999999965 49999999999999999753211
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
++.+.. . -....++......|+++.|.
T Consensus 95 ----~~~~~~------------------------~-------------------------Wv~~ttl~DsrssV~DV~Fa 121 (361)
T KOG2445|consen 95 ----EEAHGR------------------------R-------------------------WVRRTTLVDSRSSVTDVKFA 121 (361)
T ss_pred ----cccccc------------------------e-------------------------eEEEEEeecCCcceeEEEec
Confidence 000000 0 01234556678899999999
Q ss_pred CCC---EEEEEECCCcEEEEECCCCeeee------Eee--------CCCCeEEEEEeec--CCCEEEEEEcC-----CcE
Q 005646 364 KNN---YLLSASIDKTVRLWRVGNDHCLR------VFP--------HSNYVTCVHFNPV--DDNYFISGSID-----GKV 419 (686)
Q Consensus 364 ~~~---~L~s~s~Dg~V~iWd~~~~~~~~------~~~--------h~~~V~~v~fsp~--~~~~l~sgs~D-----g~V 419 (686)
|.. .|++++.||+||||+.-.---+. .++ +.....|+.|+|. ...+|+.|+.+ +.+
T Consensus 122 P~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~ 201 (361)
T KOG2445|consen 122 PKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV 201 (361)
T ss_pred chhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccce
Confidence 975 89999999999999875433222 222 5667899999983 34678888866 589
Q ss_pred EEEecCCCc-----EEEEeccCCcEEEEEEccC----CCEEEEEecCCcEEEEeCCCCe------------eeeeeeEEe
Q 005646 420 RIWAVLSCH-----VVDWVDIRQIVTAVCYRPD----GQGGIVGSMMGDCRFYNVSDNH------------LELDAEICV 478 (686)
Q Consensus 420 ~iwd~~~~~-----~~~~~~~~~~V~~v~~spd----g~~l~~gs~dg~i~iwd~~~~~------------~~~~~~~~~ 478 (686)
.||...... +-.+.+|..+|+.++|.|+ -..||+++.|| |+||++.... .....++..
T Consensus 202 ~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~ 280 (361)
T KOG2445|consen 202 KIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEK 280 (361)
T ss_pred EEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEE
Confidence 999775432 2256689999999999994 35799999999 9999987421 122233334
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
......|.+.|..+.|.- .|..|++.|.||.||+|..+-..
T Consensus 281 vs~~~~H~~~VWrv~wNm----------------------------tGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 281 VSELDDHNGEVWRVRWNM----------------------------TGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred eeeccCCCCceEEEEEee----------------------------eeeEEeecCCCceeeehhhhhhh
Confidence 444556777888888877 78999999999999999876543
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=5.3e-21 Score=200.27 Aligned_cols=218 Identities=18% Similarity=0.311 Sum_probs=183.5
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
++..+++|+.|..|.+|..... .+...|++|+..|.|+....++. |+|||.|.+++||....
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~-------~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---------- 131 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQA-------EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---------- 131 (745)
T ss_pred cCcceEeecccceEEEEecCCC-------CchhhhhccccceeeeecCCcCc-eEecccccceEEecchh----------
Confidence 3346899999999999965543 33567999999999999888887 99999999999998743
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA 371 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~ 371 (686)
....+.+|...|++++.-|.+.++||
T Consensus 132 ------------------------------------------------------l~~~l~gH~asVWAv~~l~e~~~vTg 157 (745)
T KOG0301|consen 132 ------------------------------------------------------LVYSLQGHTASVWAVASLPENTYVTG 157 (745)
T ss_pred ------------------------------------------------------hhcccCCcchheeeeeecCCCcEEec
Confidence 23446799999999999999999999
Q ss_pred ECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
|.|++|++|.- ++++++|. |.+.|..+++-| +..|++++.||.|++|++....+....+|..-|.++++.+++..
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCe
Confidence 99999999975 88889998 999999999986 56799999999999999966667789999999999998888899
Q ss_pred EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
+++++.|++++||+.. .+.+.. .+ +...|.++.+.+ ..-+++|+.||.||||...
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I--~l------PttsiWsa~~L~--NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVI--TL------PTTSIWSAKVLL--NGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEE--ec------CccceEEEEEee--CCCEEEeccCceEEEEEec
Confidence 9999999999999986 333221 21 224588888887 2578899999999999643
No 133
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=7.9e-21 Score=198.63 Aligned_cols=279 Identities=19% Similarity=0.283 Sum_probs=208.4
Q ss_pred CccceeeccceEEEEEcCCccc-----------cccc-cccC------------------ceecccCCceEEEEEeeCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSK-----------ELSA-LYKG------------------QEIQAHDGSILTMKFSPDGQ 263 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~-----------~~~~-~~~~------------------~~l~~H~~~I~~l~fspdg~ 263 (686)
..+++++.|++|++|++..... ++.. .+.. ...-+....|.+++.+|+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 4578999999999999865111 1100 0000 01123445799999999999
Q ss_pred EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccccc
Q 005646 264 YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343 (686)
Q Consensus 264 ~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (686)
+||+|..-|++|||++.+.+....+..++..+.|+.++..............+. .+. +++.+- .
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR--lIH-----------V~Dv~r---n 536 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR--LIH-----------VYDVKR---N 536 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCc--eEE-----------EEeccc---c
Confidence 999999999999999999998888888888888877765443322111222221 111 111111 0
Q ss_pred CCCeEEeccCCCCeeEEEeeCCC---EEEEEECCCcEEEEECCCCeeeeEee------CCCCeEEEEEeecCCCEEEEEE
Q 005646 344 EKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 344 ~~~~~~l~~h~~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs 414 (686)
-.+++++.+|...|+++.|..+| .+++++.|+.|.+--.+...-...|. ....+..|+..| +.+++++++
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~c 615 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVC 615 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEe
Confidence 13678899999999999998877 89999999988654333221122222 246789999999 999999999
Q ss_pred cCCcEEEEecCCCcEEEEe----ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 415 IDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 415 ~Dg~V~iwd~~~~~~~~~~----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
.|..|||||+.+++.+..+ ++.+....+...|.|.|+++.+.|.++.+||..++.+.. ...+|...|+
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA--------~m~GHsE~VT 687 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA--------QMTGHSEAVT 687 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh--------hhcCcchhee
Confidence 9999999999999988655 355678889999999999999999999999999998764 2456778899
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
++.|.+ |.++|++.+.||.|.||.+..
T Consensus 688 G~kF~n----------------------------DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLN----------------------------DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecc----------------------------cchhheeecCCceEEEEECch
Confidence 999999 899999999999999999865
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.3e-20 Score=200.18 Aligned_cols=236 Identities=19% Similarity=0.295 Sum_probs=190.1
Q ss_pred cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
.+|+..-+.|+|.|+|++|.|++.||.|++|+......
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------------------------ 47 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------------------------ 47 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------------------------
Confidence 36999999999999999999999999999998765420
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV 405 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~ 405 (686)
.| ..+.-+...|.+++... ++|++++.+++|.+|.+.++..-..+. ..-++++++|+-
T Consensus 48 ------------------~P-~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g- 106 (933)
T KOG1274|consen 48 ------------------EP-ETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG- 106 (933)
T ss_pred ------------------CC-chhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-
Confidence 00 11112666777777533 389999999999999999887665554 678899999998
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcE-EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 484 (686)
++++++.||.|-.|++-++.+... ..+.+|.++|.++.|+|.+++||+.+.||.|+|||+.++.+.....-........
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 999999999999999999987654 4788999999999999999999999999999999999876543221111110111
Q ss_pred CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-----------------cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 485 ~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
....+..++|+| ++..+++.+.|+.|.+|+.. +.++|+|+|+|||+++.||.|.|||+++-
T Consensus 187 ~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 187 LSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred ccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 134577899999 77888899999999999743 35789999999999999999999999973
No 135
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.1e-20 Score=168.32 Aligned_cols=215 Identities=21% Similarity=0.337 Sum_probs=156.1
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee-eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT-EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
.....|.+++|+|.|.+.|.|+..+++||-....-..+. ..+....++. +
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~-v---------------------------- 80 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS-V---------------------------- 80 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCe-E----------------------------
Confidence 356789999999999999999999999987653221110 0000111110 0
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeee-----Eee-CCCCeEE
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR-----VFP-HSNYVTC 399 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~-----~~~-h~~~V~~ 399 (686)
....-+.|.+.|.|.+|+|+| +|++|+.|++|++.-++...|.. .|. |.+.|..
T Consensus 81 -------------------~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtird 141 (350)
T KOG0641|consen 81 -------------------LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRD 141 (350)
T ss_pred -------------------EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceee
Confidence 112224578888888888888 88888888888877665443321 122 5555555
Q ss_pred EEEee---------------------------------------------cCCCEEEEEEcCCcEEEEecCCCcEEEEec
Q 005646 400 VHFNP---------------------------------------------VDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 400 v~fsp---------------------------------------------~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~ 434 (686)
++|-. -++-+|++|+.|.+||+||++-..++...+
T Consensus 142 l~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 142 LAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred eEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 55532 046789999999999999999888775543
Q ss_pred c--------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 435 I--------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 435 ~--------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
. ...|.+++..|.|++|++|-.|..+.+||++.++.++. ...|...|.++.|+|
T Consensus 222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~--------f~phsadir~vrfsp---------- 283 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR--------FHPHSADIRCVRFSP---------- 283 (350)
T ss_pred CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee--------eCCCccceeEEEeCC----------
Confidence 2 25699999999999999999999999999999886542 445778899999999
Q ss_pred CCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 507 ADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 507 ~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
...||++++.|..|++=|++..
T Consensus 284 ------------------~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 284 ------------------GAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred ------------------CceEEEEecccceEEEeecccc
Confidence 6788999999999999998764
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=2.7e-19 Score=180.99 Aligned_cols=282 Identities=20% Similarity=0.336 Sum_probs=213.1
Q ss_pred eccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC----
Q 005646 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID---- 294 (686)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~---- 294 (686)
+.+..+.|||+.+..+. ...+.-...|....|+| +.++++|+|. +.+.+|+...+...+...+-+..
T Consensus 177 s~~h~lSVWdWqk~~~~-------~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~ 248 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKL-------GPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKF 248 (626)
T ss_pred CCccccchhhchhhhcc-------CcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceE
Confidence 55667889999876552 23445667899999999 5667788876 89999999888766655433222
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECC
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASID 374 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~D 374 (686)
+.|+.|..+. . .+.+.+.+.+.+|.....++. +....|.+.|.+|....+|.|++|+.|
T Consensus 249 Vl~v~F~eng-------------d----viTgDS~G~i~Iw~~~~~~~~----k~~~aH~ggv~~L~~lr~GtllSGgKD 307 (626)
T KOG2106|consen 249 VLCVTFLENG-------------D----VITGDSGGNILIWSKGTNRIS----KQVHAHDGGVFSLCMLRDGTLLSGGKD 307 (626)
T ss_pred EEEEEEcCCC-------------C----EEeecCCceEEEEeCCCceEE----eEeeecCCceEEEEEecCccEeecCcc
Confidence 1222232222 1 123455667777777665543 333389999999999999999999999
Q ss_pred CcEEEEECCCC-----------------------------------------eeeeEeeCCCCeEEEEEeecCCCEEEEE
Q 005646 375 KTVRLWRVGND-----------------------------------------HCLRVFPHSNYVTCVHFNPVDDNYFISG 413 (686)
Q Consensus 375 g~V~iWd~~~~-----------------------------------------~~~~~~~h~~~V~~v~fsp~~~~~l~sg 413 (686)
..|..||-.-. -.+.++.|......++.+| +.++|+|+
T Consensus 308 Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~ 386 (626)
T KOG2106|consen 308 RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTC 386 (626)
T ss_pred ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-Chhheeec
Confidence 99999984111 0111223778889999999 89999999
Q ss_pred EcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 414 s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
+.|+.|+||+ ..++.-......++.++.|+|.| .+|+|+..|...+.|..+..+... + . ...+++.+.
T Consensus 387 gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~-----~---~-d~~~ls~v~ 454 (626)
T KOG2106|consen 387 GQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI-----H---T-DNEQLSVVR 454 (626)
T ss_pred cCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE-----E---e-cCCceEEEE
Confidence 9999999999 55666556678889999999999 999999999999999988554321 1 1 147799999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCC-----------------cceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGP-----------------NVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~-----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
|+| ++.++++++.|+.|+||-+. +-+.|++|+++|.+-+-|-.|..|...
T Consensus 455 ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 455 YSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 999 89999999999999999643 236788899999999999999999433
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=6e-21 Score=186.80 Aligned_cols=232 Identities=19% Similarity=0.284 Sum_probs=174.2
Q ss_pred ccceeeccceEEEEEcCCccc---------cccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCee
Q 005646 215 DAMFCSKVQRVKVYHCKKRSK---------ELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~---------~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
..++-+..|+|+||++...-. ......+..++.+|.+.=++|+|||- ...|+||..-+.|++|...++.-
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W 246 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW 246 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCce
Confidence 556678889999999754221 11223344577899999999999993 22588888888999999887651
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
.. -...|.+|+..|-+|+|||
T Consensus 247 ~v-----------------------------------------------------------d~~Pf~gH~~SVEDLqWSp 267 (440)
T KOG0302|consen 247 KV-----------------------------------------------------------DQRPFTGHTKSVEDLQWSP 267 (440)
T ss_pred ee-----------------------------------------------------------cCccccccccchhhhccCC
Confidence 00 1133457999999999999
Q ss_pred CC--EEEEEECCCcEEEEECCCC---eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc---EE-EEecc
Q 005646 365 NN--YLLSASIDKTVRLWRVGND---HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH---VV-DWVDI 435 (686)
Q Consensus 365 ~~--~L~s~s~Dg~V~iWd~~~~---~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~---~~-~~~~~ 435 (686)
.. .|+|||.||+|+|||++.+ .++.+-.|++.|+.|.|+. ...+|++|+.||+++|||+++-+ .+ .+..|
T Consensus 268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H 346 (440)
T KOG0302|consen 268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH 346 (440)
T ss_pred ccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEec
Confidence 76 9999999999999999988 5666656999999999998 77799999999999999998654 33 67789
Q ss_pred CCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCee------e-------eeeeEEeeccccCCCCCeEEEEEeCCCCCe
Q 005646 436 RQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHL------E-------LDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 436 ~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~------~-------~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
+.+|++|.|+| +...|++++.|.+|.|||+.-..- . ...++.+. ..-.+.|..+.|+++.+.+
T Consensus 347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV---HqGQke~KevhWH~QiPG~ 423 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV---HQGQKEVKEVHWHRQIPGL 423 (440)
T ss_pred cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE---ecchhHhhhheeccCCCCe
Confidence 99999999999 456788889999999999863221 0 00001000 0123557788898877777
Q ss_pred EEEEeCCC
Q 005646 502 VMVSCADS 509 (686)
Q Consensus 502 l~~~s~D~ 509 (686)
+++++.||
T Consensus 424 lvsTa~dG 431 (440)
T KOG0302|consen 424 LVSTAIDG 431 (440)
T ss_pred EEEecccc
Confidence 77777665
No 138
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=6.8e-21 Score=197.66 Aligned_cols=239 Identities=22% Similarity=0.349 Sum_probs=178.3
Q ss_pred EEEEEeeC---CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 254 LTMKFSPD---GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 254 ~~l~fspd---g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
.+..|++. ...||.+.+||.|.++|.....
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~----------------------------------------------- 85 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIV----------------------------------------------- 85 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhh-----------------------------------------------
Confidence 34667652 4579999999999999976532
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeE---eeCCCCeEEEEEeecC
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV---FPHSNYVTCVHFNPVD 406 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~---~~h~~~V~~v~fsp~~ 406 (686)
|++.+..+..+..|...|.++.|.|.. .|++++.|.++++||+.+.++... +.|...|.+++|.|.+
T Consensus 86 ---------fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n 156 (720)
T KOG0321|consen 86 ---------FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN 156 (720)
T ss_pred ---------cchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC
Confidence 111122345567899999999999944 999999999999999999988766 4599999999999999
Q ss_pred CCEEEEEEcCCcEEEEecCCCcE----------------------------EEEeccCCcEEE---EEEccCCCEEEEEe
Q 005646 407 DNYFISGSIDGKVRIWAVLSCHV----------------------------VDWVDIRQIVTA---VCYRPDGQGGIVGS 455 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~~~~~----------------------------~~~~~~~~~V~~---v~~spdg~~l~~gs 455 (686)
...|++|+.||.|.|||++-..+ ..+..+...|.+ +.+..|...||+++
T Consensus 157 ~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSag 236 (720)
T KOG0321|consen 157 PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAG 236 (720)
T ss_pred CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeecc
Confidence 99999999999999999974320 011122233444 55556778888877
Q ss_pred c-CCcEEEEeCCCCeeeeeeeEEeeccccCC---CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc------------
Q 005646 456 M-MGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------------ 519 (686)
Q Consensus 456 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------------ 519 (686)
. |+.|+|||++.+......+.........| ...+++|.... .+.+|++.+.|+.|+.|++...
T Consensus 237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~ 315 (720)
T KOG0321|consen 237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL 315 (720)
T ss_pred CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence 7 99999999998765443322222222222 23466676666 6788888889999999997642
Q ss_pred -------eeEcCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005646 520 -------IGKYKDGKHIVSAGEDSNVYMWNCIGHEEP 549 (686)
Q Consensus 520 -------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~ 549 (686)
-..+||+.+|++|+.|..+++|.+...+.+
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 235669999999999999999999987743
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=1.9e-20 Score=195.86 Aligned_cols=305 Identities=15% Similarity=0.169 Sum_probs=211.9
Q ss_pred eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-----------CCEEEEEeCCCcEEEE
Q 005646 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-----------GQYLASAGDDGVVRLW 277 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-----------g~~Lasgs~Dg~I~vW 277 (686)
|.+..+.+.+...|..++|||++.-.+ .-+...+--|...||.+.--|- ...+.|++.|++||+|
T Consensus 332 Fdet~~klscVYndhSlYvWDvrD~~k----vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLYVWDVRDVNK----VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred ecCCCceEEEEEcCceEEEEecccccc----ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 444557888899999999999985443 2233445569999999987661 2358999999999999
Q ss_pred EeecCeeeeeec--cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCC
Q 005646 278 QVVEDERLTEVD--IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (686)
Q Consensus 278 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 355 (686)
++..+..-..+. +...+...+. +.......+. .....+..+......+..-
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~-------------y~d~~~q~~~--------------d~~~~~fdka~~s~~d~r~ 460 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIP-------------YEDSTQQIMH--------------DASAGIFDKALVSTCDSRF 460 (1080)
T ss_pred ecccccccceeecccchhhhhcCc-------------cccCchhhhh--------------hccCCcccccchhhcCccc
Confidence 997643111111 0000000000 0000000000 0000111233333445566
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec--CCCEEEEEEcCCcEEEEecCCCcE-E
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV--DDNYFISGSIDGKVRIWAVLSCHV-V 430 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~--~~~~l~sgs~Dg~V~iwd~~~~~~-~ 430 (686)
.+.+++.+|++ +|++|..-|+++||++..-.....+. |...|.|+.|+.. ..++|++++.|.-|.|||+...-. +
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 89999999999 99999999999999999888777776 9999999999852 347899999999999999976543 3
Q ss_pred -EEeccCCcEEEEEEccCC--CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 431 -DWVDIRQIVTAVCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 431 -~~~~~~~~V~~v~~spdg--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
.+-+|...|+++.|.-.| ..+++++.|..|.+--..... ...+-...........++.++..| ..+++++++.
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~---~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQ 616 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS---SGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQ 616 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc---CceeccccccccccceEEEeeeCC-CcceEEEEec
Confidence 566789999999999877 678888888877653322110 001111122223346799999999 8899999999
Q ss_pred CCcEEEEeCCcc------------------eeEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 508 DSQVRILQGPNV------------------IGKYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 508 D~~I~iwd~~~~------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
|..||||+..+. +...|.|.||||...|.++.++|+-+++.
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh
Confidence 999999997643 44567899999999999999999999873
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.5e-21 Score=205.12 Aligned_cols=236 Identities=21% Similarity=0.412 Sum_probs=198.5
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCC
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 295 (686)
++.+...-.++||+.+ ++.+|...|.++..-..++.+++||.|..+-+|.+....
T Consensus 7 ~m~~~~~t~Lr~~~~~-------------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~------------ 61 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTR-------------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN------------ 61 (825)
T ss_pred cceeeeeeccccccch-------------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc------------
Confidence 3444555566777643 355699999999987789999999999999999875432
Q ss_pred cceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECC
Q 005646 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID 374 (686)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~D 374 (686)
++..|.+|..+|.++.|++.. +|++|+.+
T Consensus 62 --------------------------------------------------~i~S~~~hespIeSl~f~~~E~Llaagsas 91 (825)
T KOG0267|consen 62 --------------------------------------------------AITSLTGHESPIESLTFDTSERLLAAGSAS 91 (825)
T ss_pred --------------------------------------------------hhheeeccCCcceeeecCcchhhhcccccC
Confidence 334578899999999999988 99999999
Q ss_pred CcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEeccCCcEEEEEEccCCCEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~~~~V~~v~~spdg~~l~ 452 (686)
|+|++||+..++.++++. |...+.+++|+| -+.++++|+.|+.+++||++..-+ ..+..|...|..+.|+|+|++++
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~ 170 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVA 170 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceee
Confidence 999999999999888887 999999999999 899999999999999999995444 45566888899999999999999
Q ss_pred EEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------
Q 005646 453 VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-------------- 518 (686)
Q Consensus 453 ~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-------------- 518 (686)
.|+.|..++|||+..+++.. ....|...+..+.|+| ..-++..|+.|+++++||+.+
T Consensus 171 ~g~ed~tvki~d~~agk~~~--------ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v 241 (825)
T KOG0267|consen 171 SGGEDNTVKIWDLTAGKLSK--------EFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGV 241 (825)
T ss_pred ccCCcceeeeeccccccccc--------ccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCCccCCc
Confidence 99999999999998887643 2456778899999999 778899999999999999874
Q ss_pred -ceeEcCCCCEEEEEeCCC
Q 005646 519 -VIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 519 -~~~~~~dg~~l~sgs~Dg 536 (686)
+..|.++++.+++|-.+.
T Consensus 242 ~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 242 RSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeecCCceeeecCchhh
Confidence 256778888888886553
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.5e-21 Score=205.13 Aligned_cols=221 Identities=19% Similarity=0.382 Sum_probs=192.1
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
......+++|+.+..+-+|.+.+..... .|.+|..+|-++.|+++..+|++|+.+|+|++||+.+++
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk------ 103 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPNAIT-------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK------ 103 (825)
T ss_pred eccceeeccCCCceeeccccccCCchhh-------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh------
Confidence 3456788999999999999887654432 378999999999999999999999999999999998764
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL 368 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L 368 (686)
.++++.||...+..+.|+|-+ +.
T Consensus 104 --------------------------------------------------------~vrtLtgh~~~~~sv~f~P~~~~~ 127 (825)
T KOG0267|consen 104 --------------------------------------------------------IVRTLTGHLLNITSVDFHPYGEFF 127 (825)
T ss_pred --------------------------------------------------------hhhhhhccccCcceeeeccceEEe
Confidence 567788999999999999999 88
Q ss_pred EEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCCcEEEEEEcc
Q 005646 369 LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRP 446 (686)
Q Consensus 369 ~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~sp 446 (686)
++++.|+.+++||++...|...+. |...|.++.|+| +|.++++|+.|.+++|||+..+++.. +..|.+.+.++.|+|
T Consensus 128 a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp 206 (825)
T KOG0267|consen 128 ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP 206 (825)
T ss_pred ccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCc
Confidence 999999999999999999999998 999999999999 99999999999999999999999885 445899999999999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 005646 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 447 dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~ 509 (686)
..-.++.|+.|+++++||+++...+-. .+.....|.++.|.| ++..+++|....
T Consensus 207 ~e~Lla~Gs~d~tv~f~dletfe~I~s--------~~~~~~~v~~~~fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 207 LEVLLAPGSSDRTVRFWDLETFEVISS--------GKPETDGVRSLAFNP-DGKIVLSGEQIS 260 (825)
T ss_pred hhhhhccCCCCceeeeeccceeEEeec--------cCCccCCceeeeecC-CceeeecCchhh
Confidence 999999999999999999986554321 223356799999999 777777776554
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=6.5e-20 Score=183.79 Aligned_cols=273 Identities=16% Similarity=0.237 Sum_probs=199.8
Q ss_pred cceeeecCCC--ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeec
Q 005646 205 EGERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVE 281 (686)
Q Consensus 205 ~~~~~s~~~~--~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~ 281 (686)
-+..|.+..+ .+++|...|+|-+|+++.+.++....+ -+..|.++|.+|.|+| +...+++.+.||+||+-|++.
T Consensus 190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---LFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---EeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 3445555443 678899999999999975555444333 3567999999999999 566899999999999999987
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
+..- .+..+..-...+..+.
T Consensus 267 ~i~e------------------------------------------------------------~v~s~~~d~~~fs~~d 286 (498)
T KOG4328|consen 267 NISE------------------------------------------------------------EVLSLDTDNIWFSSLD 286 (498)
T ss_pred hhhH------------------------------------------------------------HHhhcCccceeeeecc
Confidence 5411 1111112334556777
Q ss_pred eeCCC-EEEEEECCCcEEEEECCCCee-eeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-----EEEEe
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-----VVDWV 433 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~~~~-~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-----~~~~~ 433 (686)
|+.+. .++.+..=|...+||++++.. ...+. |...|++|+++|....+|+|++.|++++|||++.-. .+...
T Consensus 287 ~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~ 366 (498)
T KOG4328|consen 287 FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL 366 (498)
T ss_pred ccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc
Confidence 77766 677777767999999998765 44444 888999999999999999999999999999998532 46788
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC--CeeeeeeeEEeeccccCCCCC--eEEEEEeCCCCCeEEEEeCCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKR--ITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~--I~~l~fsp~~~~~l~~~s~D~ 509 (686)
.|...|.++.|+|.|-.|++.+.|..|+|||..- .+......+ .| ...+... .....|.| +..+++++-.-.
T Consensus 367 ~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~H--n~~t~RwlT~fKA~W~P-~~~li~vg~~~r 442 (498)
T KOG4328|consen 367 PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PH--NNRTGRWLTPFKAAWDP-DYNLIVVGRYPR 442 (498)
T ss_pred cccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-ec--cCcccccccchhheeCC-CccEEEEeccCc
Confidence 8999999999999888899999999999999841 111111111 11 2222222 33457999 788999998888
Q ss_pred cEEEEeCCc-----------------ceeEcCCCCEEEE-EeCCCcEEEEeCC
Q 005646 510 QVRILQGPN-----------------VIGKYKDGKHIVS-AGEDSNVYMWNCI 544 (686)
Q Consensus 510 ~I~iwd~~~-----------------~~~~~~dg~~l~s-gs~Dg~V~iWd~~ 544 (686)
.|-|+|... ...++|-+..+++ ++.-|.|+||--+
T Consensus 443 ~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 443 PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 899998542 2457777774554 5567889998654
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.4e-19 Score=187.98 Aligned_cols=265 Identities=17% Similarity=0.243 Sum_probs=190.7
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
.|+.+-.+|.|.+++.......+.. .......+|.+.|..++|-|....|++++.|.++++||+.+++...
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G-------- 136 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG-------- 136 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec--------
Confidence 5788899999999998765443211 1123467899999999999966689999999999999998876321
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEE
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSAS 372 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s 372 (686)
...+.||.+.|.+++|.|.+ .+++|+
T Consensus 137 ----------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGg 164 (720)
T KOG0321|consen 137 ----------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGG 164 (720)
T ss_pred ----------------------------------------------------ceeecccccccchhhhccCCCcceeecc
Confidence 12456899999999999988 899999
Q ss_pred CCCcEEEEECCCCee--------------------eeEe--------eCCC----CeEEEEEeecCCCEEEEEEc-CCcE
Q 005646 373 IDKTVRLWRVGNDHC--------------------LRVF--------PHSN----YVTCVHFNPVDDNYFISGSI-DGKV 419 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~--------------------~~~~--------~h~~----~V~~v~fsp~~~~~l~sgs~-Dg~V 419 (686)
.||.|.|||++.... .+.+ .+.. .|+.+.| . |...||+++. |+.|
T Consensus 165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~i 242 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTI 242 (720)
T ss_pred CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcce
Confidence 999999999964430 0000 1333 3555555 4 8899999888 9999
Q ss_pred EEEecCCCcEEE---------Eecc---CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 420 RIWAVLSCHVVD---------WVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 420 ~iwd~~~~~~~~---------~~~~---~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
++||+++..... +..+ .-.+++++....|.+|++.+.|+.|++|++.............+ ...
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~-----~~~ 317 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK-----LNS 317 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc-----ccc
Confidence 999999765331 1112 23578888888899999999999999999986543322111100 001
Q ss_pred CeE-EEEEeCCCCCeEEEEeCCCcEEEEeCCc----------------ceeEcC-CCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 488 RIT-GFQFLPQDSSKVMVSCADSQVRILQGPN----------------VIGKYK-DGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 488 ~I~-~l~fsp~~~~~l~~~s~D~~I~iwd~~~----------------~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
.++ .-..+| ++..+++|+.|....+|.+.+ .++|.| .-.-++|+++|..++||++.++-+
T Consensus 318 sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 318 SFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred eeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 111 223566 889999999999999998643 355655 233455669999999999977653
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-17 Score=175.35 Aligned_cols=302 Identities=15% Similarity=0.239 Sum_probs=216.7
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceeccc-CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAH-DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
.+++...+.||.+-.+|.|.||+... ..+...++.+| ...|-+++|++ +..|++.+.+|.|.-||+.+++.+
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~------~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSN------NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCC------CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCcee
Confidence 45566677899999999999998765 33444566666 45899999995 557889999999999999999998
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
..+......+..+...+.. ..+..+.+.. .+..+..+. +.. ..-..|.-..+.|.+++|+|+
T Consensus 104 ~~~d~~gg~IWsiai~p~~----~~l~IgcddG-vl~~~s~~p---------~~I----~~~r~l~rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPEN----TILAIGCDDG-VLYDFSIGP---------DKI----TYKRSLMRQKSRVLSLSWNPT 165 (691)
T ss_pred EEecCCCcceeEEEeCCcc----ceEEeecCCc-eEEEEecCC---------ceE----EEEeecccccceEEEEEecCC
Confidence 8887766665555444332 2222221111 111111111 100 011233345789999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEee---------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEec
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP---------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVD 434 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~ 434 (686)
+ .|++|+.||.|++||+..++.+.... ...-|+++.|-. ...|++|..-|+|.+||...+.++ ....
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhhhh
Confidence 9 79999999999999999998776221 234588888874 678999999999999999999887 4556
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
|...|.+++..+++.++++++.|+.|..|...+++-. .........|...|.+++..+ ..+++|+.|..+.+-
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~----wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE----WVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAIC 316 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc----eeeeccccCCcccceeeeeec---ceEEecceeeEEEEc
Confidence 8889999999999999999999999999998876542 233344567788899999988 389999999988876
Q ss_pred eCCc-------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 515 QGPN-------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 515 d~~~-------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
-... ....+|.+..+.++.++..+.+|.
T Consensus 317 ~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~ 351 (691)
T KOG2048|consen 317 SSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWK 351 (691)
T ss_pred cccccCchhhhccccccccceeecCccceEEEEec
Confidence 4332 223344555555555555444453
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.4e-19 Score=170.68 Aligned_cols=271 Identities=17% Similarity=0.220 Sum_probs=195.5
Q ss_pred CcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 204 ~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.+++.|++.|.++|.|..+|+|.|||..+.. ..+.|.+|..+|++++||+||+.|+|++.|..|.+||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 5778999999999999999999999877654 356788999999999999999999999999999999999887
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
+++.+. ...+|+...|+
T Consensus 99 ~l~rir---------------------------------------------------------------f~spv~~~q~h 115 (405)
T KOG1273|consen 99 PLKRIR---------------------------------------------------------------FDSPVWGAQWH 115 (405)
T ss_pred ceeEEE---------------------------------------------------------------ccCccceeeec
Confidence 555443 34678888888
Q ss_pred CCC--EEEEEECCCcEEEEECCCCe--eeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC
Q 005646 364 KNN--YLLSASIDKTVRLWRVGNDH--CLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 364 ~~~--~L~s~s~Dg~V~iWd~~~~~--~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~ 436 (686)
|.. ..+..-++..-.+-++...+ ++..-. .+..-.+..|.+ .++++++|...|.+.++|..+.+++......
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rit 194 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRIT 194 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeec
Confidence 865 45555555555555555422 111111 112223346788 8999999999999999999999998665543
Q ss_pred --CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee-eeeeEEeeccc--cCCCCCeEEEEEeCCCCCeEEEEeC-CCc
Q 005646 437 --QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE-LDAEICVHSKK--KAPCKRITGFQFLPQDSSKVMVSCA-DSQ 510 (686)
Q Consensus 437 --~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~-~~~~~~~~~~~--~~~~~~I~~l~fsp~~~~~l~~~s~-D~~ 510 (686)
..|..+-++..|+.|++-+.|..||.|+++.-.-. ...+.....+. .-....-.++.|+. ++.+++.+++ -..
T Consensus 195 s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHA 273 (405)
T ss_pred hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEecccccee
Confidence 57889999999999999999999999998631111 00000000000 00112345678888 7777777664 466
Q ss_pred EEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 511 VRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 511 I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++||.... -+.|+|-...|++- ..|.|+||.....+
T Consensus 274 LYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 274 LYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred EEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 88887432 14577777788887 78899999987654
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.7e-19 Score=168.45 Aligned_cols=191 Identities=16% Similarity=0.210 Sum_probs=145.6
Q ss_pred eEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC-----eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 347 ~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~-----~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
+..+++|.+.|++++|+.+| +|++++.|++|+||+++.. ++++.--..+..+.+.|.|....+++++....+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35678999999999999999 9999999999999999753 23332223456789999995555666666777899
Q ss_pred EEecCCCc-------EEEE------eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 421 IWAVLSCH-------VVDW------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 421 iwd~~~~~-------~~~~------~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
+|.+...+ .+.+ ..|.-.+..+-....+++|++++.|..|.+|++.. ++... ......
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~L~~--------idtnq~ 229 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QLLQS--------IDTNQS 229 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ceeee--------eccccc
Confidence 99875322 1111 12445677777778899999999999999999984 33221 111223
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-----------------------cceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 488 RITGFQFLPQDSSKVMVSCADSQVRILQGP-----------------------NVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-----------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.-+..+.+| ++.++++++---.|++|+.. ...+|+++...++|.|.||+++|||.+
T Consensus 230 ~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 230 SNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 356678999 89999999999999999742 347899999999999999999999987
Q ss_pred CCC
Q 005646 545 GHE 547 (686)
Q Consensus 545 ~~~ 547 (686)
-..
T Consensus 309 VrY 311 (420)
T KOG2096|consen 309 VRY 311 (420)
T ss_pred ceE
Confidence 643
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.7e-17 Score=173.92 Aligned_cols=235 Identities=15% Similarity=0.250 Sum_probs=193.3
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
-..+|++|+|+...+.||.+=.||.|-||++..+=.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-------------------------------------------- 59 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-------------------------------------------- 59 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCce--------------------------------------------
Confidence 346899999999999999999999999999976321
Q ss_pred CceEEEeCCccccccCCCeEEec-cCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecC
Q 005646 329 ESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~ 406 (686)
....+. +....|.+|+|++.+.|++.+.+|.|.-||+.+.+.+..+. ..+.|++++.+| .
T Consensus 60 -----------------~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~ 121 (691)
T KOG2048|consen 60 -----------------LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-E 121 (691)
T ss_pred -----------------eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-c
Confidence 112222 34568999999988899999999999999999999999888 789999999999 8
Q ss_pred CCEEEEEEcCCcEEEEecCCCcEEEE---eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 407 DNYFISGSIDGKVRIWAVLSCHVVDW---VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~~~~~~~~---~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
+..++.|+.||.+..+++..+.+... ...++.|.+++|+|++..++.|+.||.|++||...+.......+.+....+
T Consensus 122 ~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k 201 (691)
T KOG2048|consen 122 NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK 201 (691)
T ss_pred cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccccc
Confidence 89999999999888888888776532 234578999999999999999999999999999887765533333333334
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
....-|.++.|.. ...+++|..-|.|.+||... +++..+++.++++++.|+.|.-+...+.+
T Consensus 202 ~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 202 REPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred CCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 3455688899885 47899999999999999753 35667789999999999999999988764
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=188.33 Aligned_cols=257 Identities=16% Similarity=0.226 Sum_probs=202.3
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
.++.++|+.+++++.|+.|++|+......+ ...+.-|...|.+++.. +.+|++|+.+++|.+|.+.+++.-
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~------P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~- 89 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEE------PETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED- 89 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccC------CchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc-
Confidence 466778889999999999999986544221 12233377788888764 559999999999999999876521
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
..+...+-++.+++++.+|
T Consensus 90 -------------------------------------------------------------~iL~Rftlp~r~~~v~g~g 108 (933)
T KOG1274|consen 90 -------------------------------------------------------------TILARFTLPIRDLAVSGSG 108 (933)
T ss_pred -------------------------------------------------------------ceeeeeeccceEEEEecCC
Confidence 1112244688999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec---------c
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---------I 435 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---------~ 435 (686)
+++.||.|-.|++-++......+++. |.++|.++.|+| .+++||+.+.||+|++||+.++.+..+.. .
T Consensus 109 ~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~ 187 (933)
T KOG1274|consen 109 KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL 187 (933)
T ss_pred cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc
Confidence 99999999999999999888888877 999999999999 99999999999999999999887653321 1
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
...++.++|+|+|..+++-..|+.|.+|+..+...+.... . +.+...+..++|+| .+++|++++.||.|-|||
T Consensus 188 s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr----~--~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 188 SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR----D--KLSSSKFSDLQWSP-NGKYIAASTLDGQILVWN 260 (933)
T ss_pred cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec----c--cccccceEEEEEcC-CCcEEeeeccCCcEEEEe
Confidence 3457889999998888888899999999998877654322 2 22334499999999 799999999999999999
Q ss_pred CC-----------cceeEcCCCCEEEEEeCCCcEEEE
Q 005646 516 GP-----------NVIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 516 ~~-----------~~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
.. .+++|.|++..|-.-..-|...+|
T Consensus 261 v~t~~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 261 VDTHERHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cccchhccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 76 356777877666555555555444
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=6.7e-20 Score=184.97 Aligned_cols=232 Identities=12% Similarity=0.211 Sum_probs=201.0
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
+.+.+++..|++|+...++.|||+......+. .++..-.-...+++.+||.+..+++..||.|.|||+.+..
T Consensus 471 ckL~pdgrtLivGGeastlsiWDLAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--- 542 (705)
T KOG0639|consen 471 CKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--- 542 (705)
T ss_pred eEecCCCceEEeccccceeeeeeccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---
Confidence 45678999999999999999999876554332 2343344567889999999999999999999999997643
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
.++.|+||.+.+.||..+++|
T Consensus 543 -----------------------------------------------------------~VrqfqGhtDGascIdis~dG 563 (705)
T KOG0639|consen 543 -----------------------------------------------------------LVRQFQGHTDGASCIDISKDG 563 (705)
T ss_pred -----------------------------------------------------------eeecccCCCCCceeEEecCCC
Confidence 567889999999999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEc
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~s 445 (686)
.|.||+-|.+||-||+++++.+........|.++-.+| ++.+++.|-.++.|.|-.....+...+..|...|.++.|.
T Consensus 564 tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa 642 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFA 642 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccccEEEEEEec
Confidence 99999999999999999999988888889999999999 9999999999999999988888877888899999999999
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
+.|+++++.+.|+-+..|.+.-+.-++.. .....|.+...+. +.+++++|+.|..-.||.+
T Consensus 643 ~cGkwfvStGkDnlLnawrtPyGasiFqs---------kE~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 643 YCGKWFVSTGKDNLLNAWRTPYGASIFQS---------KESSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCceeeecCchhhhhhccCccccceeec---------cccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 99999999999999999998776644321 1236699999998 7799999999998888864
No 150
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=8.6e-19 Score=172.64 Aligned_cols=169 Identities=23% Similarity=0.372 Sum_probs=143.3
Q ss_pred eecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 245 EIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 245 ~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
.+.||+++|..++|+| +.+.|||||+|.+|.||++-.+.....+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------- 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------- 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------------------------------
Confidence 4679999999999999 67789999999999999997765332221
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
.|+..|.||...|--++|+|.- .|++++.|.+|.+||+.++..+.++.|.+.|+++.
T Consensus 122 ---------------------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~s 180 (472)
T KOG0303|consen 122 ---------------------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMS 180 (472)
T ss_pred ---------------------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEE
Confidence 5788999999999999999976 99999999999999999999999999999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-ccCC-cEEEEEEccCCCEEEEEe---cCCcEEEEeCCCCe
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQ-IVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNH 469 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~-~V~~v~~spdg~~l~~gs---~dg~i~iwd~~~~~ 469 (686)
|+- ++.+|++.+.|.+|||||.++++++... .|.+ ....+.|-.+|..+-+|- .+..+-+||..+-.
T Consensus 181 fn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 181 FNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred ecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccccc
Confidence 999 9999999999999999999999998544 4443 345667888898555553 36779999976543
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.8e-19 Score=180.38 Aligned_cols=208 Identities=18% Similarity=0.272 Sum_probs=176.3
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
-++++|+..+.|+|||++.. ...+.+++|+..|+++.++....|||+++..|.|.|..+.++.....+..
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~k-------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--- 161 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAK-------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI--- 161 (673)
T ss_pred eeeeccCcCceeeehhhHHH-------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec---
Confidence 67889999999999987632 22456889999999999999999999999999999999988764333321
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~ 371 (686)
+....|.-|.|++.. +|.++
T Consensus 162 ----------------------------------------------------------~sgqsvRll~ys~skr~lL~~a 183 (673)
T KOG4378|consen 162 ----------------------------------------------------------DSGQSVRLLRYSPSKRFLLSIA 183 (673)
T ss_pred ----------------------------------------------------------CCCCeEEEeecccccceeeEee
Confidence 123345688999987 88899
Q ss_pred ECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCC
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ 449 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~ 449 (686)
+.+|.|.+||+....++..+. |..+...|+|+|.+..+|++.+.|.+|.+||++..+.........+.++++|.++|.
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGT 263 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCce
Confidence 999999999999888887776 999999999999999999999999999999999988888888889999999999999
Q ss_pred EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 450 GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 450 ~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+|++|+..|.|..||++..+.... ...+|...|++++|-|
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~-------v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVA-------VRSAHDASVTRVAFQP 303 (673)
T ss_pred EEEeecCCceEEEEecccCCCCce-------EeeecccceeEEEeee
Confidence 999999999999999987654321 1344667799999988
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=1.6e-18 Score=173.88 Aligned_cols=245 Identities=16% Similarity=0.244 Sum_probs=191.2
Q ss_pred ccccCceecccCCceEEEEEeeCC--CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccc
Q 005646 239 ALYKGQEIQAHDGSILTMKFSPDG--QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKE 316 (686)
Q Consensus 239 ~~~~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (686)
.....+.++-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+..
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d------------------------------- 223 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD------------------------------- 223 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-------------------------------
Confidence 344456777899999999999953 58999999999999999632210
Q ss_pred cceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee--
Q 005646 317 KISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-- 392 (686)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-- 392 (686)
..-+..+..|.++|.+|.|+|.+ .+++.|+||+|++-|++....-..+.
T Consensus 224 ---------------------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~ 276 (498)
T KOG4328|consen 224 ---------------------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD 276 (498)
T ss_pred ---------------------------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC
Confidence 01345567899999999999988 99999999999999999876544444
Q ss_pred -CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EEEeccCCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCC
Q 005646 393 -HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 393 -h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~ 468 (686)
....+..++|+. ....++.+..=|...+||+++... -.+.-|...|+.++++|. ..+||+++.|++.+|||++.-
T Consensus 277 ~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l 355 (498)
T KOG4328|consen 277 TDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQL 355 (498)
T ss_pred ccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhh
Confidence 345677888888 666666676667999999998754 345567779999999994 567899999999999999754
Q ss_pred eeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC----c--------------------ceeEcC
Q 005646 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----N--------------------VIGKYK 524 (686)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----~--------------------~~~~~~ 524 (686)
...... .-....|...|.+..|+|.++. |++++.|..|||||.. . -..|.|
T Consensus 356 ~~K~sp----~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P 430 (498)
T KOG4328|consen 356 RGKASP----FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP 430 (498)
T ss_pred cCCCCc----ceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC
Confidence 332221 1123457788999999996665 9999999999999973 0 035777
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 525 DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 525 dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+..+|++|-.-..|-|+|-+.++
T Consensus 431 ~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 431 DYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CccEEEEeccCcceeEEcCCCCE
Confidence 99999999999999999988776
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=1.7e-17 Score=171.75 Aligned_cols=181 Identities=17% Similarity=0.175 Sum_probs=136.4
Q ss_pred CeeEEEeeCCC-EE-EEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEE-EEcCCcEEEEecCCCcEEEE
Q 005646 356 EILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 356 ~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~s-gs~Dg~V~iwd~~~~~~~~~ 432 (686)
.+..++|+|++ .+ ++++.++.|++||+.+++.+..+.....+..++|+| +++.+++ ++.|+.|++||+.+.+.+..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 35679999998 55 567789999999999998887776444567899999 7776654 55689999999999887766
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCC-cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE-eCCCc
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQ 510 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~-s~D~~ 510 (686)
......+.+++|+|+|++++++..++ .+.+||..+.+...... ....+..++|+| ++..++++ ..++.
T Consensus 111 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~~~~~~~~s~-dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 111 IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL---------VDQRPRFAEFTA-DGKELWVSSEIGGT 180 (300)
T ss_pred eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE---------cCCCccEEEECC-CCCEEEEEcCCCCE
Confidence 66556678999999999999988765 46778987765432110 112357799999 66666554 46999
Q ss_pred EEEEeCCcc----------------------eeEcCCCCEEEE-EeCCCcEEEEeCCCCC
Q 005646 511 VRILQGPNV----------------------IGKYKDGKHIVS-AGEDSNVYMWNCIGHE 547 (686)
Q Consensus 511 I~iwd~~~~----------------------~~~~~dg~~l~s-gs~Dg~V~iWd~~~~~ 547 (686)
|++||..+. +.++|++++++. .+.++.|.+||+.+++
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 999996531 446789998655 4556789999998765
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.4e-18 Score=175.43 Aligned_cols=280 Identities=16% Similarity=0.215 Sum_probs=204.9
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
+..++....+++||....... ..+..++ -.-.|.+++|+.... .+|+.+.|..|++|.-.. + ..++.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~--~~~~~~t---~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g-~-~~~Vp----- 72 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETK--SEYVHQT---AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG-K-TPEVP----- 72 (673)
T ss_pred eeeeccCCceEEeecccccCc--cccccCC---CCCcceeeeccccceEEEeecCCceeEEEecccC-C-CCccc-----
Confidence 455677778999987653321 1111111 122489999987653 244456788999997432 2 11100
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~ 373 (686)
.+....+. .-.|++..... ++++|+.
T Consensus 73 ---------------------------------------------------~~~k~~gd--~~~Cv~~~s~S~y~~sgG~ 99 (673)
T KOG4378|consen 73 ---------------------------------------------------RVRKLTGD--NAFCVACASQSLYEISGGQ 99 (673)
T ss_pred ---------------------------------------------------eeeccccc--hHHHHhhhhcceeeeccCc
Confidence 11122222 33455554555 9999999
Q ss_pred CCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC--CcEEEEEEccCCCE
Q 005646 374 DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR--QIVTAVCYRPDGQG 450 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~--~~V~~v~~spdg~~ 450 (686)
.++|+|||++...+.+.+. |...|+++.++- .+.||++++..|.|.|..+.++.....+.+. ..|.-+.|+|..+.
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce
Confidence 9999999999877887777 999999999998 8999999999999999999998877655554 44668999997765
Q ss_pred -EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC------------
Q 005646 451 -GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP------------ 517 (686)
Q Consensus 451 -l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~------------ 517 (686)
|.+++.+|.|.+||+....... .....|..+..+++|+|.+..++++.+.|..|.+||..
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~-------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~ 251 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIF-------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH 251 (673)
T ss_pred eeEeeccCCeEEEEeccCCCccc-------chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC
Confidence 5568899999999998765432 23567888999999999999999999999999999964
Q ss_pred --cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccC-CcEEEecCCC
Q 005646 518 --NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCG 575 (686)
Q Consensus 518 --~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g 575 (686)
+.++|.++|.+|+.|+..|.|+.||+...+ .++.....|.. ...++|-...
T Consensus 252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-------~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-------APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CcceeeecCCceEEEeecCCceEEEEecccCC-------CCceEeeecccceeEEEeeecc
Confidence 347899999999999999999999998765 34444544544 4455554443
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.3e-18 Score=167.04 Aligned_cols=265 Identities=18% Similarity=0.283 Sum_probs=188.8
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
..+|++-..|.|++|+...... .+++++|...+..++|.. .+..+.+|+.||+||+||++.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~-------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~---- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL-------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR---- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh-------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh----
Confidence 4578899999999998765322 467899999999999987 467899999999999999987663322
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC-CCeeEEEeeCCC-EEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS-GEILDLSWSKNN-YLL 369 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~~~-~L~ 369 (686)
..+.+|. .+-.+++.+..+ .++
T Consensus 110 --------------------------------------------------------~~~~~~~~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 110 --------------------------------------------------------ISWTQQSGTPFICLDLNCKKNIIA 133 (376)
T ss_pred --------------------------------------------------------eeccCCCCCcceEeeccCcCCeEE
Confidence 2233343 345566655444 555
Q ss_pred EEE----CCCcEEEEECCCCee-eeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc----EEEEeccCCc
Q 005646 370 SAS----IDKTVRLWRVGNDHC-LRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQI 438 (686)
Q Consensus 370 s~s----~Dg~V~iWd~~~~~~-~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~~~~~ 438 (686)
+|. .|-.|.+||++..+. +..+. |.+.||++.|+|.+.++|+|||.||.|.|||+.... ++..+.+...
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS 213 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS 213 (376)
T ss_pred eccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence 554 367899999998776 77766 999999999999999999999999999999997642 4567778888
Q ss_pred EEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeec----cccCCCCCeEEEEEeCCCCCeEEEEeC-CCcEE
Q 005646 439 VTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHS----KKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVR 512 (686)
Q Consensus 439 V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~I~~l~fsp~~~~~l~~~s~-D~~I~ 512 (686)
|..+.|..++ +.|.+-+..++..+|++..+......+..... ........+.. ..+|.+....++++. -+...
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~ 292 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGT 292 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCcee
Confidence 9999999887 45778889999999999887754322211000 00011111111 234656666666655 45555
Q ss_pred EEeCCc--------c--------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 513 ILQGPN--------V--------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 513 iwd~~~--------~--------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
++-... . +.|...+..+.|||+||.+.+|...+.
T Consensus 293 ~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 293 IFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred EEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCc
Confidence 553221 1 223347889999999999999997543
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=3.4e-18 Score=169.36 Aligned_cols=287 Identities=21% Similarity=0.327 Sum_probs=199.0
Q ss_pred eeeecCCC-ccceeeccceEEEEEcCCccccc--cccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 207 ERVRLNEE-DAMFCSKVQRVKVYHCKKRSKEL--SALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 207 ~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
..|..+.. .+++|+.|..|++|.+......- ..+.-...|..|...|+++.|+|+|++||||+.+|.|.+|....-.
T Consensus 19 ~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~ 98 (434)
T KOG1009|consen 19 VDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVR 98 (434)
T ss_pred EEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcC
Confidence 34444544 88999999999999986644332 2333345688899999999999999999999999999999865411
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
+. .... + ....+ .. -.....+.+|..+|.+++|+
T Consensus 99 -~~-----~~d~-e-------------~~~~k----------------------e~----w~v~k~lr~h~~diydL~Ws 132 (434)
T KOG1009|consen 99 -IF-----DADT-E-------------ADLNK----------------------EK----WVVKKVLRGHRDDIYDLAWS 132 (434)
T ss_pred -Cc-----cccc-h-------------hhhCc----------------------cc----eEEEEEecccccchhhhhcc
Confidence 00 0000 0 00000 00 01235667899999999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-------
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD------- 434 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~------- 434 (686)
|++ ++++++.|.++++||+..|+.+..+. |..+|..++|.| -.+++++-+.|...+.+++...+.+....
T Consensus 133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 999 99999999999999999999999888 999999999999 89999999999988888876554332111
Q ss_pred -------------c----CCcEEEEEEccCCCEEEEEec----CC-----cEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 435 -------------I----RQIVTAVCYRPDGQGGIVGSM----MG-----DCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 435 -------------~----~~~V~~v~~spdg~~l~~gs~----dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
| +.-...++|+|||..+++... .+ ..++|+-..-+. .... ......+
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r---P~~~----lp~~~k~ 284 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR---PAAR----LPSPKKP 284 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC---ceee----cCCCCcc
Confidence 1 111456899999999987532 22 234554321111 1111 1122344
Q ss_pred eEEEEEeCC-------C---------CCeEEEEeCCCcEEEEeCCc----------------ceeEcCCCCEEEEEeCCC
Q 005646 489 ITGFQFLPQ-------D---------SSKVMVSCADSQVRILQGPN----------------VIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 489 I~~l~fsp~-------~---------~~~l~~~s~D~~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg 536 (686)
...+.|+|- . -.++++...-+.|.|||..+ -++|++||.+|+..|.||
T Consensus 285 ~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 285 ALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred eEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 445555441 1 12344445567899998754 478999999999999999
Q ss_pred cEEEEeCCCCC
Q 005646 537 NVYMWNCIGHE 547 (686)
Q Consensus 537 ~V~iWd~~~~~ 547 (686)
..-+-.++..+
T Consensus 365 yCS~vtfe~~e 375 (434)
T KOG1009|consen 365 FCSLVTFEPWE 375 (434)
T ss_pred ceEEEEEcchh
Confidence 98888887765
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=6e-18 Score=175.08 Aligned_cols=134 Identities=20% Similarity=0.297 Sum_probs=104.9
Q ss_pred cCCcEEEEecCCC-c----EEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 415 IDGKVRIWAVLSC-H----VVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 415 ~Dg~V~iwd~~~~-~----~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
.-|.|-||+++.. + ++........|+.+.|.| |.+.||+++.||.|++|.+..+.+... ..........|..+
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~-~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN-EMTPEKILTIHGEK 679 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc-cCCcceeeecccce
Confidence 3567777777542 2 122223456699999999 888999999999999999987654321 12233345668889
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005646 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHEEP 549 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~ 549 (686)
|+.+.|+|-....|++++.|.+|++||+.+ .++|+|||+.+||.+.||+|+||+...++.+
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 999999998888999999999999999764 2789999999999999999999999887744
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=9.7e-19 Score=168.65 Aligned_cols=228 Identities=21% Similarity=0.365 Sum_probs=166.3
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
-++|.|+.-|.|+|.|+.+... ...+.+|...|+.|+|.|+ .++|++|+.|..||+|++++..++..+.
T Consensus 106 p~la~~G~~GvIrVid~~~~~~-------~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG--- 175 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQC-------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG--- 175 (385)
T ss_pred eeEEeecceeEEEEEecchhhh-------ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec---
Confidence 3788889999999998765433 3557889999999999996 5799999999999999999987654442
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~ 371 (686)
-+.||.+.|+++.|++++ +|+++
T Consensus 176 --------------------------------------------------------G~egHrdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 176 --------------------------------------------------------GVEGHRDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred --------------------------------------------------------ccccccCcEEEEEEcCCCCeeecc
Confidence 235799999999999999 99999
Q ss_pred ECCCcEEEEECCCCe-------------------------eeeEe----eCCCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 372 SIDKTVRLWRVGNDH-------------------------CLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~-------------------------~~~~~----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
++|.++++|++...+ .+..| .|..+|-|+.|- ++++++-+-++.|..|
T Consensus 200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w 276 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCW 276 (385)
T ss_pred CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEE
Confidence 999999999997321 11112 188899999984 6899999999999999
Q ss_pred ecC-CCc-------------EEEEecc-CCcEE--EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 423 AVL-SCH-------------VVDWVDI-RQIVT--AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 423 d~~-~~~-------------~~~~~~~-~~~V~--~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
..- -.+ ++..+.. ...|. ..+|.|-+++||.|...|.|++||++.........+. ....
T Consensus 277 ~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~----~s~~ 352 (385)
T KOG1034|consen 277 KPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT----HSKS 352 (385)
T ss_pred ecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE----eccc
Confidence 761 111 1111121 12233 3566788899999999999999999987664322221 1123
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
...|...+|+. ++..|+..+.|+.|--||
T Consensus 353 ~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 353 GSTVRQTSFSR-DGSILVLVCDDGTVWRWD 381 (385)
T ss_pred cceeeeeeecc-cCcEEEEEeCCCcEEEEE
Confidence 46688888888 444444444444444444
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=1.3e-17 Score=161.06 Aligned_cols=262 Identities=23% Similarity=0.351 Sum_probs=190.0
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC----CCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
.+++....+++.+|.+..... ...+... .=..|...-..++|+-+ ..+||.||.-|.|+|.|+.+++
T Consensus 56 ~vfatvG~~rvtiy~c~~d~~-ir~lq~y-~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~------- 126 (385)
T KOG1034|consen 56 QVFATVGGNRVTIYECPGDGG-IRLLQSY-ADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ------- 126 (385)
T ss_pred ceEEEeCCcEEEEEEECCccc-eeeeeec-cCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh-------
Confidence 344444556788887755431 1111110 01248888999999875 3489999999999999998876
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YL 368 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L 368 (686)
....+.+|...|+.|.++|.. +|
T Consensus 127 -------------------------------------------------------~~~~~~ghG~sINeik~~p~~~qlv 151 (385)
T KOG1034|consen 127 -------------------------------------------------------CSKNYRGHGGSINEIKFHPDRPQLV 151 (385)
T ss_pred -------------------------------------------------------hccceeccCccchhhhcCCCCCcEE
Confidence 334567899999999999998 99
Q ss_pred EEEECCCcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-------------
Q 005646 369 LSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD------------- 431 (686)
Q Consensus 369 ~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~------------- 431 (686)
+++|.|.+||+|++++..|+..|. |.+.|.++.|++ ++.+|++++.|.+|.+|++...+...
T Consensus 152 ls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 152 LSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred EEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 999999999999999999999997 999999999999 99999999999999999998532110
Q ss_pred ----------------EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe-e-----eeeeeEEeeccccCCCCCe
Q 005646 432 ----------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH-L-----ELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 432 ----------------~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~-~-----~~~~~~~~~~~~~~~~~~I 489 (686)
..-|+..|-|+.|- |.++++=+.++.|..|..-.-. - ..................|
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i 308 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI 308 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence 11233344444443 5688888899999999872111 0 1111112222233344556
Q ss_pred EEEEE--eCCCCCeEEEEeCCCcEEEEeCCc-------------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 490 TGFQF--LPQDSSKVMVSCADSQVRILQGPN-------------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 490 ~~l~f--sp~~~~~l~~~s~D~~I~iwd~~~-------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.-+.| .| -.+.|+.|...|.|.+||+.+ ..+|+.||..|+...+|++|.-||.-
T Consensus 309 Wfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 309 WFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 65554 45 467889999999999999653 24677799999999999999999853
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.1e-18 Score=190.93 Aligned_cols=235 Identities=15% Similarity=0.202 Sum_probs=183.9
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
.++.|..||.|.+|+..+... -.......++..|++.|..+.|++. +++||+|+.||.|.|||+...+.-....
T Consensus 82 lIaGG~edG~I~ly~p~~~~~-~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---- 156 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIA-NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---- 156 (1049)
T ss_pred eeeccccCCceEEecchhhcc-CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----
Confidence 478899999999999876311 1111223456779999999999996 5599999999999999997644111000
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~ 371 (686)
-..-.+.|.+|+|+..- .|+++
T Consensus 157 --------------------------------------------------------~~~~~~eI~~lsWNrkvqhILAS~ 180 (1049)
T KOG0307|consen 157 --------------------------------------------------------SQAPPSEIKCLSWNRKVSHILASG 180 (1049)
T ss_pred --------------------------------------------------------CCCCcccceEeccchhhhHHhhcc
Confidence 01245789999998865 89999
Q ss_pred ECCCcEEEEECCCCeeeeEee-CC--CCeEEEEEeecCCCEEEEEEcCC---cEEEEecCCCc--EEEEeccCCcEEEEE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP-HS--NYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCH--VVDWVDIRQIVTAVC 443 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~-h~--~~V~~v~fsp~~~~~l~sgs~Dg---~V~iwd~~~~~--~~~~~~~~~~V~~v~ 443 (686)
+.+|.+.|||++..+.+..+. +. ..+..++|||.+...+++++.|. .|.+||+|... +..+..|...|.++.
T Consensus 181 s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gilsls 260 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLS 260 (1049)
T ss_pred CCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeec
Confidence 999999999999998887777 33 34889999997778888888764 59999998643 334568999999999
Q ss_pred EccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 444 YRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 444 ~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
|++.+ .++++++.|++|.+|+..+++.... .......+..+.|+|.++..+++++-||.|.|+.+..
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~--------~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGE--------LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCCceEeee--------cCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 99965 8999999999999999999875542 2234578999999998888999999999999987653
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=9.7e-17 Score=165.75 Aligned_cols=193 Identities=17% Similarity=0.242 Sum_probs=148.3
Q ss_pred CCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
.+-..+.||++.|.+|+..|.| .|++|+.||+|+||.+.++.|++++...+.|.||+|+|.....++..+....+.|.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 3456778999999999999999 999999999999999999999999999999999999995444444444444455543
Q ss_pred cCCC--------------------------------------cEEEEeccCCcEEEEEEccCCCEEEEEecC---CcEEE
Q 005646 424 VLSC--------------------------------------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRF 462 (686)
Q Consensus 424 ~~~~--------------------------------------~~~~~~~~~~~V~~v~~spdg~~l~~gs~d---g~i~i 462 (686)
..-| .+...+.|...|..+.|+..|.||++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 3111 122345677789999999999999997654 45999
Q ss_pred EeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCC
Q 005646 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGK 527 (686)
Q Consensus 463 wd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~ 527 (686)
+++...+.+.. .....+.|.++.|+| ...+|++++ ...|||||+. +.++++|.|.
T Consensus 551 HQLSK~~sQ~P--------F~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 551 HQLSKRKSQSP--------FRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred EecccccccCc--------hhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 99987654321 122336699999999 445555444 4679999965 3477889999
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005646 528 HIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 528 ~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.|+.|+.|+.+..+|++-..
T Consensus 621 nli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred eEEEecCCCeeEEEEcccCc
Confidence 99999999999999998754
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.3e-17 Score=160.89 Aligned_cols=310 Identities=17% Similarity=0.206 Sum_probs=205.1
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
...+.+|.+.|.+|.|+.++++|++||.|..+++|++...-.-+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k------------------------------------ 92 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK------------------------------------ 92 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc------------------------------------
Confidence 35678999999999999999999999999999999986532100
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEec-cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCC---Ce
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSN---YV 397 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~---~V 397 (686)
..||+.... .|...|.||+|...+ +|++|..+++|.+.|+.+.+.+.++.|.+ .|
T Consensus 93 --------------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~V 152 (609)
T KOG4227|consen 93 --------------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDV 152 (609)
T ss_pred --------------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccce
Confidence 013444443 466899999998877 99999999999999999999999999765 99
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEecCCCc----EEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
..+..+| ..+.|++.+.++.|.+||++..+ ++...........+.|+| ...+|++.+..+-+.+||.+......
T Consensus 153 Y~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~ 231 (609)
T KOG4227|consen 153 YHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 231 (609)
T ss_pred eecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence 9999999 68999999999999999998765 344445566788899999 45678889999999999987644221
Q ss_pred eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc---------------------eeEcCCCCEEEE
Q 005646 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---------------------IGKYKDGKHIVS 531 (686)
Q Consensus 473 ~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---------------------~~~~~dg~~l~s 531 (686)
...-...+ .......-.++.|+| ++..+++--....-.+||.... -+.+.+..-++|
T Consensus 232 ~~~~~~~~-L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~t 309 (609)
T KOG4227|consen 232 YQRSMFKG-LPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVAT 309 (609)
T ss_pred Hhhhcccc-CcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeec
Confidence 10000000 011112235677888 5555554433333333333221 112225556999
Q ss_pred EeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCC--CcccccCCCccccCc
Q 005646 532 AGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDS--PENLAFAPARFSLGQ 609 (686)
Q Consensus 532 gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~--~~~~~~spd~~~~~~ 609 (686)
|+.+=.|++|.+......-. ..+.-+.-+...+ .+--...+.++.+|- .+.+.|+|. ..
T Consensus 310 GSD~~~i~~WklP~~~ds~G-~~~IG~~~~~~~~--------------~~~i~~~~~VLrGHRSv~NQVRF~~H----~~ 370 (609)
T KOG4227|consen 310 GSDHWGIHIWKLPRANDSYG-FTQIGHDEEEMPS--------------EIFIEKELTVLRGHRSVPNQVRFSQH----NN 370 (609)
T ss_pred cCcccceEEEecCCCccccC-ccccCcchhhCch--------------hheecceeEEEecccccccceeecCC----cc
Confidence 99999999999865432110 0000000000000 000012233444443 445667776 34
Q ss_pred cccccCCCCCCCCCCCCcCCC
Q 005646 610 EYVFESFPKGCATWPEEKLPA 630 (686)
Q Consensus 610 ~~~~~s~d~~~~~W~~~~~~~ 630 (686)
.+.+....+.+++|+.-++|-
T Consensus 371 ~l~SSGVE~~~KlWS~~r~P~ 391 (609)
T KOG4227|consen 371 LLVSSGVENSFKLWSDHRLPW 391 (609)
T ss_pred eEeccchhhheeccccccCCc
Confidence 445666778889999777763
No 163
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.7e-16 Score=168.22 Aligned_cols=318 Identities=15% Similarity=0.209 Sum_probs=211.0
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC---CEEEEEeCCCcEEEEEeecCe
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG---QYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
..|+.++..++ +..+..|+||...+. .+...+.+|..+++.+.+.|.. .|+++++.||+|++||...+.
T Consensus 22 avfSnD~k~l~-~~~~~~V~VyS~~Tg-------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 22 AVFSNDAKFLF-LCTGNFVKVYSTATG-------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred cccccCCcEEE-EeeCCEEEEEecchH-------hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 34555655544 456788999965543 2345788999999999998853 478899999999999999999
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+..+...-...... +.+.....-..+....+....+.............+....+ ...+...+..|.. -..+.++
T Consensus 94 Llkt~~~~~~v~~~~-~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~--~~~~~d~~~~~~~-~~~I~~~ 169 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALV-YKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATF--DSAKGDFLKEHQE-PKSIVDN 169 (792)
T ss_pred EEEEEecCCceeEEE-echhHhCccceeEeecccceeeeecccccccceeeeEeeec--cccchhhhhhhcC-CccEEEc
Confidence 888776543322111 11111100011111111111111111111000000000000 0111122223333 3567788
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeeeE-----eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-----CcEEEEe
Q 005646 364 KNNYLLSASIDKTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-----CHVVDWV 433 (686)
Q Consensus 364 ~~~~L~s~s~Dg~V~iWd~~~~~~~~~-----~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-----~~~~~~~ 433 (686)
+.+.+...-.+..+.+|+...+..... ..|.-.++|.+++| +++++++|..||+|.+|.--. ..+..+.
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 888666666677899999987651111 12777799999999 999999999999999995432 2233444
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
=|...|++++|+++|.+|++|+..|.+-+|.+.+++.++.. .-..+|..+.++| ++...++...|++|.+
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP---------RLgs~I~~i~vS~-ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLP---------RLGSPILHIVVSP-DSDLYSLVLEDNQIHL 318 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCCccccc---------ccCCeeEEEEEcC-CCCeEEEEecCceEEE
Confidence 57889999999999999999999999999999998854422 2347799999999 8899999999999999
Q ss_pred EeCCc--------------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 514 LQGPN--------------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 514 wd~~~--------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
....+ .+++.|.-+.++-.+.-|.|.+||+-+..
T Consensus 319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred EeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 97532 24555555677777889999999998866
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=1.3e-16 Score=153.57 Aligned_cols=234 Identities=18% Similarity=0.311 Sum_probs=171.7
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceE
Q 005646 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (686)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (686)
...+.|+|||..|++-+.|..+++|++...-.-...... +. +
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~------~~-------------~------------------- 93 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP------LN-------------F------------------- 93 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc------cc-------------c-------------------
Confidence 456899999999999999999999998542210000000 00 0
Q ss_pred EEeCCccccccCCCeEEec-cCCCCeeEEEee-------CCC-EEEEEECCCcEEEEECCCCeeeeEee---CCC---Ce
Q 005646 333 VVFPPKVFRILEKPLHEFH-GHSGEILDLSWS-------KNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSN---YV 397 (686)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s-------~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~---~V 397 (686)
+...+++ .....|.+.+|- |+. ++++.+.+.-|++||.-+|+....+. |.+ ..
T Consensus 94 ------------~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taA 161 (406)
T KOG2919|consen 94 ------------SKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAA 161 (406)
T ss_pred ------------ccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhh
Confidence 0001111 123456666664 444 88999999999999999999887776 544 45
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEec-CCCc---EEEE-----eccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCC
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAV-LSCH---VVDW-----VDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~-~~~~---~~~~-----~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~ 467 (686)
.+++|+| |+.+|++|. ...|+++|+ +.++ +... .+..+.|.+++|+| +.+.+++|+...++-||.-..
T Consensus 162 hsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 162 HSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred eeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 6899999 999998775 679999999 5553 2222 23367799999999 556999999999999998776
Q ss_pred CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC-CCcEEEEeCCcc-------------------eeEcCCCC
Q 005646 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNV-------------------IGKYKDGK 527 (686)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~-D~~I~iwd~~~~-------------------~~~~~dg~ 527 (686)
..+.+. ..+|.+.|+.++|++ +++.|++|+. |..|..||+... ....|+++
T Consensus 240 ~~pl~l--------lggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 240 RRPLQL--------LGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGE 310 (406)
T ss_pred CCceee--------ecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCc
Confidence 654331 336789999999999 7788888874 889999997532 23456999
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005646 528 HIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 528 ~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|++|+.||.|++||+++..
T Consensus 311 ~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred eeeccCCCccEEEEecCCCC
Confidence 99999999999999999843
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=6.8e-17 Score=159.38 Aligned_cols=193 Identities=19% Similarity=0.299 Sum_probs=153.9
Q ss_pred CCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCe-------eeeEee-CCCCeEEEEEeecCCCEEEEEE
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDH-------CLRVFP-HSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~-------~~~~~~-h~~~V~~v~fsp~~~~~l~sgs 414 (686)
+..-.+.||+++|++++|+|-+ .|||||.|.+|.||++..+. ++..+. |...|.-|+|+|.-.+.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 3445678999999999999976 99999999999999997553 333444 9999999999998899999999
Q ss_pred cCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC-CCCeEEEE
Q 005646 415 IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP-CKRITGFQ 493 (686)
Q Consensus 415 ~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~I~~l~ 493 (686)
.|.+|.||++.+++.+....|...|.+++|+.||.++++.+.|..|||||.+++++.... .+| ..+-..+.
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--------~~heG~k~~Rai 223 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--------VAHEGAKPARAI 223 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec--------ccccCCCcceeE
Confidence 999999999999998877889999999999999999999999999999999999876543 112 22344556
Q ss_pred EeCCCCCeEEEEe----CCCcEEEEeCCcc----------------eeEc-CCCCEEE-EEeCCCcEEEEeCCCCC
Q 005646 494 FLPQDSSKVMVSC----ADSQVRILQGPNV----------------IGKY-KDGKHIV-SAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 494 fsp~~~~~l~~~s----~D~~I~iwd~~~~----------------~~~~-~dg~~l~-sgs~Dg~V~iWd~~~~~ 547 (686)
|.. ++. +++++ .+.++-+||..+. +.|+ +|.+.|. +|-.|+.||-|.+.+..
T Consensus 224 fl~-~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 224 FLA-SGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred Eec-cCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 666 556 55544 4788999986542 2333 3555554 55689999999998765
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=8e-18 Score=173.17 Aligned_cols=245 Identities=19% Similarity=0.307 Sum_probs=177.4
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
++..|...|+.+.|.|....|++|+.||+|++|+++....-.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~-------------------------------------- 330 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA-------------------------------------- 330 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc--------------------------------------
Confidence 677899999999999998999999999999999994311000
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe----------eeeEe-e
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH----------CLRVF-P 392 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~----------~~~~~-~ 392 (686)
...-+++.+|++|.++|.|+++.+++ ++++|+.||+|+.|++.... ....+ +
T Consensus 331 ----------------~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G 394 (577)
T KOG0642|consen 331 ----------------EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG 394 (577)
T ss_pred ----------------ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceec
Confidence 00015889999999999999999999 99999999999999664211 11222 3
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec--cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
|.+.|+.+++++ ....|++++.||+||+|+........+.. ..+..+.+.+.... .+....+.....+++.+...
T Consensus 395 htdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 395 HTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred cccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch--hHhhhhhcccccccchhhhh
Confidence 999999999999 88889999999999999988776632222 22334555554332 22222334555555544333
Q ss_pred eeeeeEEeecc--ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEEEe
Q 005646 471 ELDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVSAG 533 (686)
Q Consensus 471 ~~~~~~~~~~~--~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs 533 (686)
.....+..... .......+.-+..+| ...+.+++..|+.|+++|.. +.+++-|+|-+|++++
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence 33222211111 111224577788888 67899999999999999843 5578889999999999
Q ss_pred CCCcEEEEeCCCCC
Q 005646 534 EDSNVYMWNCIGHE 547 (686)
Q Consensus 534 ~Dg~V~iWd~~~~~ 547 (686)
.|+.|++|++....
T Consensus 551 ~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 551 HDGSVRLWKLDVKT 564 (577)
T ss_pred CCceeehhhccchh
Confidence 99999999997654
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.4e-16 Score=154.74 Aligned_cols=176 Identities=18% Similarity=0.256 Sum_probs=142.5
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCCCcEE---EEeccC-CcEE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVV---DWVDIR-QIVT 440 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~~-~~V~ 440 (686)
.+|++-..|+|++||..+++.+..|. ++..++.+.|... .+..+++|+.||+||+||+|..... .+..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 67888889999999999999999998 8889999999763 4678999999999999999987644 344444 4566
Q ss_pred EEEEccCCCEEEEEec----CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 441 AVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
+++..-.++.+++|+. +-.+.+||++..+.. +......|...|++++|+|.++++|++|+.||.|.++|.
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 6666667788888754 567999999876642 233456788999999999999999999999999999996
Q ss_pred Cc------------------ceeEcCCC-CEEEEEeCCCcEEEEeCCCCCC
Q 005646 517 PN------------------VIGKYKDG-KHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 517 ~~------------------~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
.. .+.|..++ +.|.+-+...+.++|+++.+.+
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 42 24555554 5799999999999999998873
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.1e-17 Score=185.40 Aligned_cols=263 Identities=16% Similarity=0.232 Sum_probs=194.9
Q ss_pred eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCE----EEEEeCCCcEEEEEeecCeeeeeeccCCCCC
Q 005646 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQY----LASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (686)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~----Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 295 (686)
+.+.++-||.+.....+. .+.....+. -...-+.++|.+.|.. ||.|.+||.|.+||...-..-.
T Consensus 36 st~~slEifeld~~~~~~-dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~--------- 104 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESS-DLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA--------- 104 (1049)
T ss_pred ccccccceeeecccCccc-ccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCc---------
Confidence 445666777665443321 011111111 2346788999987665 9999999999999976421000
Q ss_pred cceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEEC
Q 005646 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASI 373 (686)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~ 373 (686)
....+..+..|.+.|..|.|++.+ .||+|+.
T Consensus 105 -----------------------------------------------~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 105 -----------------------------------------------SEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred -----------------------------------------------chHHHhhhcccCCceeeeeccccCCceeeccCC
Confidence 012345566799999999999976 9999999
Q ss_pred CCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccC--CcEEEEEEccC
Q 005646 374 DKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIR--QIVTAVCYRPD 447 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~--~~V~~v~~spd 447 (686)
||.|.|||+..-+.-..+. ..+.|.+++|+.....+|++++.+|++.|||++..+.+ .+..+. ..+..+.|+|+
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 9999999998765544442 56889999999877889999999999999999988654 443332 45889999997
Q ss_pred C-CEEEEEecCC---cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc----
Q 005646 448 G-QGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---- 519 (686)
Q Consensus 448 g-~~l~~gs~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~---- 519 (686)
. ..+++++.|. .|.+||++...-.. .....|...|.++.|++.|..+|++++.|++|.+|+..+.
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~assP~-------k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFASSPL-------KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccCCch-------hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 6 4566666654 39999987544221 1235688899999999999999999999999999998762
Q ss_pred -----------eeEcC-CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 -----------IGKYK-DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 -----------~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.|.| +-..++.++-||.|-||.+.+..
T Consensus 291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 45666 44588999999999999998865
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=1.4e-16 Score=165.92 Aligned_cols=256 Identities=16% Similarity=0.281 Sum_probs=198.6
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
-.+|.++|..++.+. +.++.|||...... .+++++|+..|.|++|+.||+.+|+|+.|+.|.+|+-+-...
T Consensus 17 d~afkPDGsqL~lAA-g~rlliyD~ndG~l-------lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTL-------LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred eeEECCCCceEEEec-CCEEEEEeCCCccc-------ccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-
Confidence 367889999888765 56789998765543 578999999999999999999999999999999998532110
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
.-..|.+.|.|+.|+|-
T Consensus 88 ---------------------------------------------------------------LkYSH~D~IQCMsFNP~ 104 (1081)
T KOG1538|consen 88 ---------------------------------------------------------------LKYSHNDAIQCMSFNPI 104 (1081)
T ss_pred ---------------------------------------------------------------eeeccCCeeeEeecCch
Confidence 01259999999999998
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe---ccCCcEEE
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTA 441 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V~~ 441 (686)
. .|++++-. -.-+|..... .+........|.+.+|.. ||.+|+.|-.||+|.|-+-...+.+... +..++|.+
T Consensus 105 ~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiws 181 (1081)
T KOG1538|consen 105 THQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWS 181 (1081)
T ss_pred HHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceE
Confidence 8 88888764 3567866543 233334567789999998 9999999999999999876554444333 35788999
Q ss_pred EEEccCC-----CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 442 VCYRPDG-----QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 442 v~~spdg-----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
++|+|.. ..+++.....++.+|.++..... +.+.-.-...++++.+ ++.++++|+.|+.+.+|.-
T Consensus 182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig---------k~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG---------KDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred EEecCCCCCCccceEEEEeccceeEEEEecceeec---------ccccCCCCchhheecc-CCcEEEEccCCCceEEEee
Confidence 9999953 46888888899999988754322 1222334467899999 8999999999999999853
Q ss_pred C--------------cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 517 P--------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 517 ~--------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
. -.++..|++++++.|..||+|..|++...
T Consensus 252 ~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 252 DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 2 13678899999999999999999998543
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.4e-17 Score=166.58 Aligned_cols=249 Identities=19% Similarity=0.232 Sum_probs=182.0
Q ss_pred eeeecCCCccceeeccceEEEEEcCCcccc-ccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKE-LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..|.+....+++++.++.+++|.+.+..+. .....+..+|++|.++|.|+++.++++++++||.||+|+.|++....--
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 345566678999999999999999553221 2233455689999999999999999999999999999999988532200
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
... +++ ......+.||.+.|+.+++|+.
T Consensus 380 --~ds--------------------------------------------~dp------~vl~~~l~Ghtdavw~l~~s~~ 407 (577)
T KOG0642|consen 380 --DDS--------------------------------------------YDP------SVLSGTLLGHTDAVWLLALSST 407 (577)
T ss_pred --ccc--------------------------------------------cCc------chhccceeccccceeeeeeccc
Confidence 000 000 0234567899999999999998
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc------
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI------ 435 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~------ 435 (686)
. .|++++.||+|++|+.....+ .+|. ..++-+++.|-.....+.++...-+.--++++...+.+.++..
T Consensus 408 ~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~ 486 (577)
T KOG0642|consen 408 KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP 486 (577)
T ss_pred ccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence 8 999999999999999877666 4444 4566677777542223333333333333444444433333221
Q ss_pred --CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 436 --RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 436 --~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
...+..+.++|.+...+++..|+.|+++|..++++... ..+|...++++++.| ++.+|++++.|+++++
T Consensus 487 ~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s--------~~a~~~svtslai~~-ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 487 RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS--------MVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRL 557 (577)
T ss_pred cccCccceEEecCCCCeeEecccCCceecccccccccchh--------eeeccceecceeecC-CCceEEeecCCceeeh
Confidence 23477889999999999999999999999998876543 345667799999999 8999999999999999
Q ss_pred EeCC
Q 005646 514 LQGP 517 (686)
Q Consensus 514 wd~~ 517 (686)
|...
T Consensus 558 ~kld 561 (577)
T KOG0642|consen 558 WKLD 561 (577)
T ss_pred hhcc
Confidence 9763
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=5e-16 Score=145.86 Aligned_cols=268 Identities=15% Similarity=0.134 Sum_probs=170.6
Q ss_pred cccCcceeeecCC-CccceeeccceEEEEEcCCccccccccccCceec-ccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEGERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~~~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
++...++++-++. ++|..|...|.|++|.+..... ...++ .|...|+.+.--|+ ..|.|-+.|+.+.+|+
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~-------~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD-------LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCcc-------chhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4455555555443 4689999999999998876543 23345 57889999999987 4688999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCce--eeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELK--PLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
+..+..+..-.+.........|+........ .+.....+..............+.+-+ ..-.+..+.
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d-----------d~~~~Klgs 152 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD-----------DSERSKLGS 152 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC-----------chhccccCc
Confidence 9876544433322222221122111111111 111111111110000000000000000 011235567
Q ss_pred eeEEEeeCC-C---EEEEEECCCcEEEEECCCCeeeeEe-----------eCCCCeEEEEEeecCCCEEEEEEcCCcEEE
Q 005646 357 ILDLSWSKN-N---YLLSASIDKTVRLWRVGNDHCLRVF-----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421 (686)
Q Consensus 357 V~~l~~s~~-~---~L~s~s~Dg~V~iWd~~~~~~~~~~-----------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~i 421 (686)
+++..|... + +|+.|-.+|.|.+||+.++..+..+ .|..+|.++.|.+ .-+.=++|+.+.++..
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~ 231 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVM 231 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcccccee
Confidence 888876433 2 7778889999999999997333222 2899999999998 6666778888999999
Q ss_pred EecCCC--cEE---EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 422 WAVLSC--HVV---DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 422 wd~~~~--~~~---~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
|.+... .+. ...-.+..|..+.+.||++.+|+++.|++||||+.++..... ..+.|...|++++|+|
T Consensus 232 ~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA--------VLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 232 YSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA--------VLKYHSAGVNAVAFSP 303 (323)
T ss_pred eeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh--------hhhhhhcceeEEEeCC
Confidence 988643 222 222234568899999999999999999999999998876543 2455778899999999
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.2e-15 Score=164.83 Aligned_cols=283 Identities=19% Similarity=0.323 Sum_probs=201.4
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEEEEeecC
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
....|++-...++++....+|.|||+.+... +.....+ . .-...|+.|.+-. |..+|++|+.||.||||+--..
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~n~-~--~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFDNG-A--FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCce-eccccCC-C--CCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 4556777778888888889999999987643 1111111 0 2345799999865 5668999999999999974322
Q ss_pred e-eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 283 E-RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 283 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
. ...++ +..+.. .--.+.+-.+.=.-+.
T Consensus 1144 ~~~~~eL--------------------------------VTaw~~-------------------Ls~~~~~~r~~~~v~d 1172 (1387)
T KOG1517|consen 1144 KWKKPEL--------------------------------VTAWSS-------------------LSDQLPGARGTGLVVD 1172 (1387)
T ss_pred ccCCcee--------------------------------EEeecc-------------------ccccCccCCCCCeeee
Confidence 1 00000 000000 0000111112224567
Q ss_pred eeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc----EEEEec
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVD 434 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~ 434 (686)
|.... +|++++.-..|+|||....+++..+. ...-|+++.-+-..+++|+.|..||.||+||.+... +..+..
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 77655 88888888999999999999988877 567788887766578999999999999999998653 235566
Q ss_pred cCCc--EEEEEEccCCCE-EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 435 IRQI--VTAVCYRPDGQG-GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 435 ~~~~--V~~v~~spdg~~-l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
|... |..+.+.+.|-. |++|+.+|.|++||++.........+..+ ...++..+++..++ ....+++|+. +.|
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~---~~yGs~lTal~VH~-hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH---WEYGSALTALTVHE-HAPIIASGSA-QLI 1327 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec---cccCccceeeeecc-CCCeeeecCc-ceE
Confidence 6665 999999997765 99999999999999987533222222111 11123589999999 7889999999 999
Q ss_pred EEEeCC---------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 512 RILQGP---------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 512 ~iwd~~---------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.||+.. .+++|+|-.-+||+|+.|.+|.||....+.
T Consensus 1328 kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999853 457899999999999999999999987654
No 173
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=2.2e-16 Score=163.58 Aligned_cols=218 Identities=20% Similarity=0.319 Sum_probs=162.4
Q ss_pred HHhhcccceeeecccCcceeeecCCCccce--eeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEE
Q 005646 189 WFSRLRSLACVVDKQGEGERVRLNEEDAMF--CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYL 265 (686)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~L 265 (686)
++.+++.+.. .-.+|.+.|..+...++. .+..|.|-||++....+-....... +. ....|+.+.|.| |.+.|
T Consensus 569 hi~NLrnln~--~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~--l~-Ngt~vtDl~WdPFD~~rL 643 (1012)
T KOG1445|consen 569 HISNLRNLNT--RLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPG--LF-NGTLVTDLHWDPFDDERL 643 (1012)
T ss_pred hhhhhhcccc--cCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccc--cc-cCceeeecccCCCChHHe
Confidence 4444444332 223466667777776654 5678999999987654422222111 11 346799999999 78899
Q ss_pred EEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCC
Q 005646 266 ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (686)
Q Consensus 266 asgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (686)
|.++.||.|++|.+..+...... ..
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~-------------------------------------------------------~t 668 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENE-------------------------------------------------------MT 668 (1012)
T ss_pred eecccCceEEEEEeccCCCCccc-------------------------------------------------------CC
Confidence 99999999999999876522111 13
Q ss_pred CeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 346 PLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
|-..+.+|...|+.|.|+|-- .|++++.|.+|+|||+.+++....+. |.+.|..++|+| +++.+++.+.||+|++|
T Consensus 669 Pe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy 747 (1012)
T KOG1445|consen 669 PEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVY 747 (1012)
T ss_pred cceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEe
Confidence 556778899999999999965 99999999999999999998877776 999999999999 99999999999999999
Q ss_pred ecCCCcEEEEec---cCCcEEEEEEccCCCEEEEEecCC----cEEEEeCCC
Q 005646 423 AVLSCHVVDWVD---IRQIVTAVCYRPDGQGGIVGSMMG----DCRFYNVSD 467 (686)
Q Consensus 423 d~~~~~~~~~~~---~~~~V~~v~~spdg~~l~~gs~dg----~i~iwd~~~ 467 (686)
..+.++.-...+ ....--.|.|.-||+++++.+.|. .|.+||..+
T Consensus 748 ~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 748 EPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 998876432221 112234577888999998877654 588888754
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=1.9e-14 Score=151.63 Aligned_cols=262 Identities=15% Similarity=0.196 Sum_probs=171.7
Q ss_pred ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEEEEEeecCeeeeeeccCCCCC
Q 005646 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVEDERLTEVDIPEIDP 295 (686)
Q Consensus 217 ~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~vWd~~~~~~~~~~~~~~~~~ 295 (686)
++...++.|.+|++... ..+ ...+.+. +.+....|+++|++++|+.++ .++.|.+|++.....+...
T Consensus 6 ~~~~~~~~I~~~~~~~~-g~l---~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~------- 73 (330)
T PRK11028 6 IASPESQQIHVWNLNHE-GAL---TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA------- 73 (330)
T ss_pred EEcCCCCCEEEEEECCC-Cce---eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe-------
Confidence 34467899999998532 111 1123333 345677899999999987764 4788999998632111000
Q ss_pred cceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE-C
Q 005646 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-I 373 (686)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s-~ 373 (686)
... ...+....++++|++ +|++++ .
T Consensus 74 ----------------------------------------------------~~~-~~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 74 ----------------------------------------------------AES-PLPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred ----------------------------------------------------eee-cCCCCceEEEECCCCCEEEEEEcC
Confidence 000 012235689999999 666665 4
Q ss_pred CCcEEEEECCCC----eeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCcEEE-------EeccCCcEEE
Q 005646 374 DKTVRLWRVGND----HCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVVD-------WVDIRQIVTA 441 (686)
Q Consensus 374 Dg~V~iWd~~~~----~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~~~~-------~~~~~~~V~~ 441 (686)
++.|.+|++.+. +.+..+.+.....+++++| +++++++++ .++.|++||+.+...+. ..........
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~ 179 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH 179 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCce
Confidence 899999999743 2233333445678899999 888776554 56999999997633221 1122345678
Q ss_pred EEEccCCCEEEEEec-CCcEEEEeCCC--CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEeCC
Q 005646 442 VCYRPDGQGGIVGSM-MGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGP 517 (686)
Q Consensus 442 v~~spdg~~l~~gs~-dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D~~I~iwd~~ 517 (686)
+.|+|+|+++++++. +++|.+|++.. +.+.....+........+......+.++| ++++++++. .++.|.+|+..
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEe
Confidence 999999999988876 89999999974 33322212111111111222345688999 777777765 47899999742
Q ss_pred ------------------cceeEcCCCCEEEEEeC-CCcEEEEeCCC
Q 005646 518 ------------------NVIGKYKDGKHIVSAGE-DSNVYMWNCIG 545 (686)
Q Consensus 518 ------------------~~~~~~~dg~~l~sgs~-Dg~V~iWd~~~ 545 (686)
..+.++|||++|+++.. +++|.+|+++.
T Consensus 259 ~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 259 EDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 23678889999998875 89999999864
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=8e-15 Score=136.19 Aligned_cols=244 Identities=19% Similarity=0.254 Sum_probs=170.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccc---cccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSK---ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~---~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.++++.+++++.|..+|.|.+..++.... +.......-..++|.++|..|+|. ..+|++|+. |.|+=|...+..
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 36677888999999999999998764321 111112223458999999999998 447888875 999999887644
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.....+ ..|+.. .|.+.-.-.-.+|++|...
T Consensus 93 es~~~K------------------------------------------------~lwe~~-~P~~~~~~evPeINam~ld 123 (325)
T KOG0649|consen 93 ESLATK------------------------------------------------RLWEVK-IPMQVDAVEVPEINAMWLD 123 (325)
T ss_pred hhccch------------------------------------------------hhhhhc-CccccCcccCCccceeEec
Confidence 210000 000000 0111101123478899888
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC-----
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR----- 436 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~----- 436 (686)
|.. -++.++.|+.++-||+++|+..+++. |.++|.++.--. ....+++|+.||++|+||.++++.+..+...
T Consensus 124 P~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~ 202 (325)
T KOG0649|consen 124 PSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL 202 (325)
T ss_pred cCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhh
Confidence 876 66666789999999999999999998 999999999854 5667899999999999999999988665421
Q ss_pred ------CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 437 ------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 437 ------~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
..|.+++. +..++++|+ .-.+.+|+++.........+. .++..+.|.. ..+++++..+.
T Consensus 203 lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpip---------a~v~~v~F~~---d~vl~~G~g~~ 267 (325)
T KOG0649|consen 203 LRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIP---------ARVHLVDFVD---DCVLIGGEGNH 267 (325)
T ss_pred cCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEecc---------cceeEeeeec---ceEEEeccccc
Confidence 23555555 444888774 457999999887665443332 4577777865 57888887778
Q ss_pred EEEEeCCc
Q 005646 511 VRILQGPN 518 (686)
Q Consensus 511 I~iwd~~~ 518 (686)
|.-|....
T Consensus 268 v~~~~l~G 275 (325)
T KOG0649|consen 268 VQSYTLNG 275 (325)
T ss_pred eeeeeecc
Confidence 88877554
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=2.2e-15 Score=163.22 Aligned_cols=253 Identities=18% Similarity=0.194 Sum_probs=187.5
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEe
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFT 301 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~ 301 (686)
+.+.||+++..... ... ..-...|+|++|+| +..+||.|..+|.|.+||+..+.... ..
T Consensus 222 ~~~~vW~~~~p~~P-e~~------~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------~s----- 281 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTP-ELV------LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------PS----- 281 (555)
T ss_pred ceEEEEecCCCCCc-eEE------EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------Cc-----
Confidence 47999998765321 111 12357899999999 67789999999999999998766311 00
Q ss_pred ecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC---EEEEEECCCcEE
Q 005646 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVR 378 (686)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~L~s~s~Dg~V~ 378 (686)
..-.....|..+|+.+.|..+- .+++++.||.|.
T Consensus 282 -------------------------------------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 282 -------------------------------------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred -------------------------------------------ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 0011123599999999997754 599999999999
Q ss_pred EEECCCCeee------eEe-------eCCCCeEEEEEeecCCCEEEEEEcCCcEEEE---ecCCCc------EEEEeccC
Q 005646 379 LWRVGNDHCL------RVF-------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIW---AVLSCH------VVDWVDIR 436 (686)
Q Consensus 379 iWd~~~~~~~------~~~-------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw---d~~~~~------~~~~~~~~ 436 (686)
.|+++.-.+. ... .....++++.|.|.+.+.|+.|+.+|.|.-= +.+... ......|.
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 9988754321 111 1345789999999999999999999998772 333332 22455678
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCC-CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
++|+++.++|-+..++..+.|-+++||... .....+. ...+...+++++|+|..+..++++..||.|.+||
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~--------~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS--------LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCcchh--------hhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 999999999977766666669999999986 3333221 2234456999999998888999999999999999
Q ss_pred CC-----------------cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 516 GP-----------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 516 ~~-----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+. +.+.+.++|+.|++|...|++++|++...
T Consensus 471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 54 23556678999999999999999999753
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=9.8e-16 Score=159.69 Aligned_cols=221 Identities=19% Similarity=0.326 Sum_probs=175.1
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
.|..++|-|||..|+.+.. ..+.|||.+.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~------------------------------------------------ 44 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT------------------------------------------------ 44 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcc------------------------------------------------
Confidence 7999999999998877754 478999998875
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l 410 (686)
.++++++|.+.|.+++|+.+| .+++|+.|+.|.+|.-. .+-+..+.|++.|.|+.|+| -...|
T Consensus 45 --------------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP-~~h~L 108 (1081)
T KOG1538|consen 45 --------------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYSHNDAIQCMSFNP-ITHQL 108 (1081)
T ss_pred --------------cccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeeccCCeeeEeecCc-hHHHh
Confidence 467788999999999999999 99999999999999753 33445677999999999999 78889
Q ss_pred EEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
++++.. ..-+|......+.. ......+.+.+|..||++++.|-.+|+|.|-+-...... .+ ....+...+|.
T Consensus 109 asCsLs-dFglWS~~qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~-----~I-~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 109 ASCSLS-DFGLWSPEQKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV-----KI-ERPGGSNSPIW 180 (1081)
T ss_pred hhcchh-hccccChhhhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce-----EE-eCCCCCCCCce
Confidence 999865 46789876554432 233456889999999999999999999999865432211 11 12455778999
Q ss_pred EEEEeCCCC----CeEEEEeCCCcEEEEeCC--------------cceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 491 GFQFLPQDS----SKVMVSCADSQVRILQGP--------------NVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 491 ~l~fsp~~~----~~l~~~s~D~~I~iwd~~--------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+++|+|..+ ..+++.....++.++... -++..+++|.|+..|+.|+.+++|..+.
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC
Confidence 999999533 367777777888877642 2567788999999999999999998665
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=3.1e-17 Score=174.93 Aligned_cols=234 Identities=23% Similarity=0.370 Sum_probs=179.2
Q ss_pred ccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccc
Q 005646 239 ALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKI 318 (686)
Q Consensus 239 ~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (686)
.+.....|.+|..+|.|..|...|.|++||+.|..++||...++.
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~----------------------------------- 223 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR----------------------------------- 223 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----------------------------------
Confidence 334455688999999999999999999999999999999977765
Q ss_pred eeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCC
Q 005646 319 SILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY 396 (686)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~ 396 (686)
++....||.+.|++++.+.++ +++++|.|..|++|.+.++.++.++. |++.
T Consensus 224 ---------------------------~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga 276 (1113)
T KOG0644|consen 224 ---------------------------CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA 276 (1113)
T ss_pred ---------------------------hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc
Confidence 445667999999999999888 99999999999999999999998887 9999
Q ss_pred eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-----EeccCCcEEEEEEccCCCEEEEEecCCc------------
Q 005646 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-----WVDIRQIVTAVCYRPDGQGGIVGSMMGD------------ 459 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-----~~~~~~~V~~v~~spdg~~l~~gs~dg~------------ 459 (686)
|++|+|+| +.+.+.||++++||.+-...+. .......+.++.|-..+..+++|+.|+.
T Consensus 277 vtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 277 VTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred eeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh
Confidence 99999999 3378899999999998211110 0011122333444444444444444444
Q ss_pred -------------------------EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 460 -------------------------CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 460 -------------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
+.+|++.++.+. .....|...+..+.++|-+....++++.||..-||
T Consensus 352 ~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~--------H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iw 423 (1113)
T KOG0644|consen 352 SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL--------HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIW 423 (1113)
T ss_pred ccceEEEeccccccccceeeeeeeEeeeeecccchhh--------hhhcccccceeeeeecCCCcHhhhhccCCCceEee
Confidence 444444444321 12456778899999999999999999999999999
Q ss_pred eCCcc---------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 515 QGPNV---------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 515 d~~~~---------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|.... -.|++||..++....-|.++|.....++
T Consensus 424 di~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 424 DIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 96533 3577899999998888999998876554
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=5.9e-15 Score=142.35 Aligned_cols=265 Identities=13% Similarity=0.147 Sum_probs=186.1
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCcccccc----c-cccCceec-ccCCceEEEEEe-------eCCCEEEEEeCCC
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELS----A-LYKGQEIQ-AHDGSILTMKFS-------PDGQYLASAGDDG 272 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~----~-~~~~~~l~-~H~~~I~~l~fs-------pdg~~Lasgs~Dg 272 (686)
.+.++++|..+++-+.|+.+.+|++........ . ..+..+++ .-...|...+|- |+..++|+.+.|.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 467899999999999999999999753211100 0 00011111 123567788886 5678999999999
Q ss_pred cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 273 ~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
-|++||.-+|+....+.. ..
T Consensus 134 PIh~wdaftG~lraSy~~------------------------------------------------------------yd 153 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRA------------------------------------------------------------YD 153 (406)
T ss_pred ceeeeeccccccccchhh------------------------------------------------------------hh
Confidence 999999999874433321 11
Q ss_pred CCC---CeeEEEeeCCCEEEEEECCCcEEEEEC-CCCeeee---Eee-----CCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 353 HSG---EILDLSWSKNNYLLSASIDKTVRLWRV-GNDHCLR---VFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 353 h~~---~V~~l~~s~~~~L~s~s~Dg~V~iWd~-~~~~~~~---~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
|.. .-.+|+|+|||.-+.++...+|+++|+ +.|.--. ++. ..+-|.|++|+|.+...++.|+.-..+-
T Consensus 154 h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~g 233 (406)
T KOG2919|consen 154 HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVG 233 (406)
T ss_pred hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceee
Confidence 322 235899999994444566789999999 4443222 222 3678999999998888999999999999
Q ss_pred EEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC
Q 005646 421 IWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 421 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~ 498 (686)
||.-..+..+ .+.+|.+.|+.++|.++|+.|++|.. +..|..||++.-+.... .+..+......+ .-+...| .
T Consensus 234 iy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~---~L~rhv~~TNQR-I~FDld~-~ 308 (406)
T KOG2919|consen 234 IYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY---ALERHVGDTNQR-ILFDLDP-K 308 (406)
T ss_pred eEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh---hhhhhccCccce-EEEecCC-C
Confidence 9988777665 55678999999999999999999876 77899999986543221 111111101111 2244556 7
Q ss_pred CCeEEEEeCCCcEEEEeCC----------------cceeEcCCCCEEEEEeCC
Q 005646 499 SSKVMVSCADSQVRILQGP----------------NVIGKYKDGKHIVSAGED 535 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~----------------~~~~~~~dg~~l~sgs~D 535 (686)
+..|++|+.||.|++||.. +.+++.|-=..++|++..
T Consensus 309 ~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 309 GEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 7899999999999999964 346677776777777654
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.5e-14 Score=156.74 Aligned_cols=316 Identities=16% Similarity=0.243 Sum_probs=217.6
Q ss_pred ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCc
Q 005646 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296 (686)
Q Consensus 217 ~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~ 296 (686)
.....+..+.+|...+..+... ....-..|...+++.++||+++++|+|..||.|.+|.--..+. .
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~---~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~--------~--- 240 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTS---SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD--------D--- 240 (792)
T ss_pred EEEEEeeeEEEEEecccceeec---cchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc--------c---
Confidence 3344566688888766442111 1112235788899999999999999999999999997432110 0
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCC
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK 375 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg 375 (686)
....+.++-|...|++++|+++| +|+||+..+
T Consensus 241 -----------------------------------------------~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 241 -----------------------------------------------SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred -----------------------------------------------cccceEEEecccccceeEEecCCceEeecccce
Confidence 01235566799999999999999 999999999
Q ss_pred cEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec------------cCCcEEEE
Q 005646 376 TVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD------------IRQIVTAV 442 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~------------~~~~V~~v 442 (686)
.+.+|.+.+++ .+.++ -.++|..+.++| ++++.+....|..|.+....+......+. ...-.+.+
T Consensus 274 VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 274 VLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred EEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 99999999999 33444 889999999999 99999999999999999886654332211 23446889
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC---CCCCeEEEEEeCCCCCeEEEEe--------CC--C
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA---PCKRITGFQFLPQDSSKVMVSC--------AD--S 509 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~I~~l~fsp~~~~~l~~~s--------~D--~ 509 (686)
+++|.-+.++..+..|.|.+||+.+.......++..+..... +...++.++.+. .+.++++.- .| -
T Consensus 352 ~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~ 430 (792)
T KOG1963|consen 352 SIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEV 430 (792)
T ss_pred EEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceE
Confidence 999977788888899999999999888877666665543322 234567777777 477777753 23 3
Q ss_pred cEEEEeCCc--------------------ceeE-cC-CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCc
Q 005646 510 QVRILQGPN--------------------VIGK-YK-DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNA 567 (686)
Q Consensus 510 ~I~iwd~~~--------------------~~~~-~~-dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (686)
.+++|.... ..++ .+ .....+|++.||.++||-+.+.+...+ ....++|..
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k--~~s~W~c~~----- 503 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK--KSSNWTCKA----- 503 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc--CccceEEee-----
Confidence 567785321 0112 22 223899999999999999977552111 111222211
Q ss_pred EEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCc
Q 005646 568 SIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 627 (686)
Q Consensus 568 ~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~ 627 (686)
+..+...+...++|+.|| .+++.+.+.++.+|+-.+
T Consensus 504 -------------------i~sy~k~~i~a~~fs~dG-----slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 504 -------------------IGSYHKTPITALCFSQDG-----SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred -------------------eeccccCcccchhhcCCC-----cEEEEecCCEEEEecCCC
Confidence 111233345567788885 334467888888888444
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=2.8e-15 Score=142.41 Aligned_cols=235 Identities=19% Similarity=0.233 Sum_probs=166.7
Q ss_pred ceEEEEEcCCcccc--ccccccCceec-ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee-eeeeccCCCCCcce
Q 005646 223 QRVKVYHCKKRSKE--LSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER-LTEVDIPEIDPSCI 298 (686)
Q Consensus 223 ~~v~vw~~~~~~~~--~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~-~~~~~~~~~~~~~~ 298 (686)
..+.||.+...... ..++.....|. .|-+.|.|+.|.|++..||+-. |..|.+|++..+.. ..++....
T Consensus 93 ~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~------ 165 (370)
T KOG1007|consen 93 TGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE------ 165 (370)
T ss_pred eeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc------
Confidence 35779988654322 22233333343 5667999999999999999876 78999999988764 22221110
Q ss_pred EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--CEEEEEECCCc
Q 005646 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKT 376 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~L~s~s~Dg~ 376 (686)
-.+|....++-+|+|. +..+....|++
T Consensus 166 ---------------------------------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~t 194 (370)
T KOG1007|consen 166 ---------------------------------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDST 194 (370)
T ss_pred ---------------------------------------------------cccccceecccccCCCCccceEEEeCCCc
Confidence 0125566778889984 45555566999
Q ss_pred EEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--EEEEeccCCcEEEEEEcc-CCCEE
Q 005646 377 VRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRP-DGQGG 451 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~v~~sp-dg~~l 451 (686)
++.||+++.++...+. |...|..+.|+|....+|++|+.||.|||||.+..+ +....+|...|.+|.|+| ..+++
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 9999999999988887 999999999999667789999999999999998654 446778899999999999 45788
Q ss_pred EEEecCCcEEEEeCCCCeeeee---------------------eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 452 IVGSMMGDCRFYNVSDNHLELD---------------------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 452 ~~gs~dg~i~iwd~~~~~~~~~---------------------~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
++|+.|..|.+|....-.-... .+-........|...|++++|+..++-++++-+.||+
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 9999999999998642210000 0000011234577889999999876666666666666
Q ss_pred EEEEe
Q 005646 511 VRILQ 515 (686)
Q Consensus 511 I~iwd 515 (686)
+-|=.
T Consensus 355 viIs~ 359 (370)
T KOG1007|consen 355 VIISS 359 (370)
T ss_pred EEeec
Confidence 55533
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=1.7e-15 Score=144.07 Aligned_cols=226 Identities=12% Similarity=0.206 Sum_probs=168.7
Q ss_pred eeccceEEEEEcCCc--cccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCC
Q 005646 219 CSKVQRVKVYHCKKR--SKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (686)
Q Consensus 219 g~~d~~v~vw~~~~~--~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 295 (686)
++.+..+++|.+... ..+.........-..|..++++..|+. +.++|.|.+-|-+..|||++++..
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----------- 185 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----------- 185 (364)
T ss_pred hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----------
Confidence 455667999998743 222223333333445778999999987 788999999999999999988631
Q ss_pred cceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEEC
Q 005646 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASI 373 (686)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~ 373 (686)
......+-+|..+|.+++|...+ .+++.+.
T Consensus 186 ------------------------------------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga 217 (364)
T KOG0290|consen 186 ------------------------------------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA 217 (364)
T ss_pred ------------------------------------------------cceeeEEEecCcceeEEEeccCccceEEEecC
Confidence 01224456799999999999976 9999999
Q ss_pred CCcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCc--EEEEeccCCcEEEEEEcc
Q 005646 374 DKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCH--VVDWVDIRQIVTAVCYRP 446 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~--~~~~~~~~~~V~~v~~sp 446 (686)
||.||++|++...-...+- ...+...++|++.+.+++++-..| ..|.|.|++... +..+.+|...|++++|.|
T Consensus 218 DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 218 DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAP 297 (364)
T ss_pred CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecC
Confidence 9999999998765433332 256889999999999999997766 569999998654 457889999999999999
Q ss_pred C-CCEEEEEecCCcEEEEeCCCCee-eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 447 D-GQGGIVGSMMGDCRFYNVSDNHL-ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 447 d-g~~l~~gs~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
. ...|++++.|..+.+||+..... .....+. .......|+.++|++..+..++++..
T Consensus 298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPil----ay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPIL----AYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCCceeeecCCcceEEEEecccccccCCCCchh----hhhccceeeeeeecccCCCEEEEEec
Confidence 4 56889999999999999975432 1111111 11244679999999976666666544
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-14 Score=161.00 Aligned_cols=275 Identities=14% Similarity=0.198 Sum_probs=178.9
Q ss_pred ceeeecccCcceee---ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCC
Q 005646 196 LACVVDKQGEGERV---RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG 272 (686)
Q Consensus 196 ~~~~~~~~~~~~~~---s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 272 (686)
++.+..|...+.+. +.++.++++|+.||+||||+..+...+........++.--.+.+.++.+.+.++.+|.++.||
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 44555666655443 345578999999999999999876655443444445554578899999999999999999999
Q ss_pred cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 273 ~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
.|++.++......+.. ..+. .+...+
T Consensus 1121 ~v~~~~id~~~~~~~~------~~~~-----------------------------------------------ri~n~~- 1146 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRV------ATQV-----------------------------------------------RIPNLK- 1146 (1431)
T ss_pred eEEEEEccccccccce------eeee-----------------------------------------------eccccc-
Confidence 9999998653100000 0000 000001
Q ss_pred CCCCeeEE-EeeCC--C-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 353 HSGEILDL-SWSKN--N-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 353 h~~~V~~l-~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
..+.+.+| ++... . .|+.+..-+.|..||++.......++ ..+.|++++.+| .++++++|...|.+.+||++
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEee
Confidence 11222222 22221 2 67788888999999999988777766 458999999999 89999999999999999999
Q ss_pred CCcEEEEe--ccCCcEEEEEEccCC---CEEEEE-e-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEE-eCC
Q 005646 426 SCHVVDWV--DIRQIVTAVCYRPDG---QGGIVG-S-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF-LPQ 497 (686)
Q Consensus 426 ~~~~~~~~--~~~~~V~~v~~spdg---~~l~~g-s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~f-sp~ 497 (686)
-+..+... .+..+++.++.+|-. ...+++ + ..+.|.+|++.++..+...-.. ..+..+.+ .|.
T Consensus 1226 F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s---------~~~p~ls~~~Ps 1296 (1431)
T KOG1240|consen 1226 FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS---------DGAPILSYALPS 1296 (1431)
T ss_pred cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC---------CCCcchhhhccc
Confidence 88777433 345778888888733 344444 3 4778999999988654422111 01111111 110
Q ss_pred C----CCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 498 D----SSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 498 ~----~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+ +..+. +. ..++-.-+.++.+|+.|..|+.||...++
T Consensus 1297 ~~~~kp~~~~-~~------------~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1297 NDARKPDSLA-GI------------SCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ccCCCCCccc-ce------------eeecccCCceeeecCCccceeeccCCCcc
Confidence 0 00000 00 00111156788999999999999998866
No 184
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=8.1e-16 Score=153.83 Aligned_cols=193 Identities=23% Similarity=0.352 Sum_probs=147.1
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEE
Q 005646 254 LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV 333 (686)
Q Consensus 254 ~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (686)
.+++|+++|..|+||+.||++|||++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-------------------------------------------------- 177 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-------------------------------------------------- 177 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--------------------------------------------------
Confidence 789999999999999999999999976543
Q ss_pred EeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCC--
Q 005646 334 VFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDD-- 407 (686)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~-- 407 (686)
.+.....|.++|.+|.|+||+ .|++-+.| ..+||+++++.++.... ..-....+.|+. ++
T Consensus 178 ------------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~ 243 (398)
T KOG0771|consen 178 ------------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQ 243 (398)
T ss_pred ------------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCC
Confidence 233445689999999999999 99999999 99999999997776655 334456677776 54
Q ss_pred -CEEE--EEEcCCcEEEEecCCCc---E---EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 408 -NYFI--SGSIDGKVRIWAVLSCH---V---VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 408 -~~l~--sgs~Dg~V~iwd~~~~~---~---~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
.+++ .-..-+.|+.||+.... . .........|++++.++||++++.|+.||.|-||+..+.+..
T Consensus 244 ~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~------- 316 (398)
T KOG0771|consen 244 ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL------- 316 (398)
T ss_pred ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee-------
Confidence 3333 33344667777764321 1 123334567999999999999999999999999999765543
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+-.+++|..-|+++.|+| |.+++++.+.|..+.|-.+.-
T Consensus 317 ~~vk~aH~~~VT~ltF~P----------------------------dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 317 QYVKEAHLGFVTGLTFSP----------------------------DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeehhhheeeeeeEEEcC----------------------------CcCcccccccCCceeEEEEee
Confidence 233677888999999999 666777777777777766654
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=5.3e-15 Score=140.58 Aligned_cols=230 Identities=18% Similarity=0.287 Sum_probs=166.9
Q ss_pred ccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCC-------CcEEEEEeecCeeeeeeccCC
Q 005646 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDD-------GVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~D-------g~I~vWd~~~~~~~~~~~~~~ 292 (686)
.++.|.+-++......+ ....|..|.+.|+.|+-+| +.+.|+|+-.| ..+.||.+..........
T Consensus 38 ~dNqVhll~~d~e~s~l----~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~--- 110 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSEL----LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS--- 110 (370)
T ss_pred CcceeEEEEecCccchh----hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccc---
Confidence 45778888776544333 2456778999999999999 55667776432 236678775433110000
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec-cCCCCeeEEEeeCCC-EEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN-YLLS 370 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~-~L~s 370 (686)
.-..+..+. .+-+.|.|+.|.|++ .|++
T Consensus 111 --------------------------------------------------tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 111 --------------------------------------------------TLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred --------------------------------------------------hhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 001222232 455699999999998 7766
Q ss_pred EECCCcEEEEECCCCee-eeEee------CCCCeEEEEEee-cCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEE
Q 005646 371 ASIDKTVRLWRVGNDHC-LRVFP------HSNYVTCVHFNP-VDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVT 440 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~-~~~~~------h~~~V~~v~fsp-~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~ 440 (686)
-. |..|.+|++..+.. +..+. +....++-+|+| .+++.+++.+ |++++.||+++......+ .|...|.
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vr 218 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVR 218 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceee
Confidence 65 89999999987765 33332 567889999999 5677777765 899999999987765332 4677899
Q ss_pred EEEEccCCC-EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 441 AVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 441 ~v~~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
.+.|+|+-+ +|++++.||.|+|||++..+.... ....|...|.++.|+|....++++++.|..|.+|..
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~-------el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ-------ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCcccc-------ccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 999999876 567788999999999987654321 245678899999999988899999999999999963
No 186
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=6.1e-16 Score=158.25 Aligned_cols=239 Identities=20% Similarity=0.333 Sum_probs=164.7
Q ss_pred cccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccce
Q 005646 240 LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKIS 319 (686)
Q Consensus 240 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (686)
+-..++|.||++.|+|+.|+.+|.+||+|+.|-.+.|||.-..+.
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------------------- 84 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------------------- 84 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce-----------------------------------
Confidence 344578999999999999999999999999999999999875543
Q ss_pred eEEEeeccCCceEEEeCCccccccCCCeEEe-ccCCCCeeEEEeeCCC---EEEEEECCCcEEEEECCC----------C
Q 005646 320 ILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGN----------D 385 (686)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~----------~ 385 (686)
++.+ .||...|.++.|-|.. ++++|+.|+.|+++|+.. .
T Consensus 85 ---------------------------lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~ 137 (758)
T KOG1310|consen 85 ---------------------------LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGME 137 (758)
T ss_pred ---------------------------eeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCcc
Confidence 3333 4899999999999853 899999999999999984 2
Q ss_pred eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-----------EEeccCCcEEEEEEcc-CCCEEE
Q 005646 386 HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-----------DWVDIRQIVTAVCYRP-DGQGGI 452 (686)
Q Consensus 386 ~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-----------~~~~~~~~V~~v~~sp-dg~~l~ 452 (686)
.....+. |...|..|+-.|...+.|.+++.||+||-+|++....- .....--...++.++| +..+|+
T Consensus 138 ~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~la 217 (758)
T KOG1310|consen 138 ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLA 217 (758)
T ss_pred chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEE
Confidence 3444455 99999999999955699999999999999999874211 1111123467889999 456899
Q ss_pred EEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE-EeCCCCCeEEEEeCCCcEE-EEeCCcceeEcCCCCEEE
Q 005646 453 VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ-FLPQDSSKVMVSCADSQVR-ILQGPNVIGKYKDGKHIV 530 (686)
Q Consensus 453 ~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~-fsp~~~~~l~~~s~D~~I~-iwd~~~~~~~~~dg~~l~ 530 (686)
+|+.|-..++||.+.......... .....+.....+++ |+|. . + ...++.+. ..-..+.+.|+|+|.-|+
T Consensus 218 VGgsdpfarLYD~Rr~lks~~s~~---~~~~~pp~~~~cv~yf~p~-h--l--kn~~gn~~~~~~~~t~vtfnpNGtElL 289 (758)
T KOG1310|consen 218 VGGSDPFARLYDRRRVLKSFRSDG---TMNTCPPKDCRCVRYFSPG-H--L--KNSQGNLDRYITCCTYVTFNPNGTELL 289 (758)
T ss_pred ecCCCchhhhhhhhhhccCCCCCc---cccCCCCcccchhheecCc-c--c--cCcccccccceeeeEEEEECCCCcEEE
Confidence 999999999999643221110000 00011111222332 4441 1 1 22233222 222345677888886665
Q ss_pred EEeCCCcEEEEeCCCCCC
Q 005646 531 SAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 531 sgs~Dg~V~iWd~~~~~~ 548 (686)
..-.--.||++|++.++.
T Consensus 290 vs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 290 VSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred EeeCCeEEEEEeecCCCC
Confidence 544445788888887663
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.66 E-value=1.3e-13 Score=148.26 Aligned_cols=251 Identities=27% Similarity=0.474 Sum_probs=190.3
Q ss_pred eeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeecCeeeeeeccCCCCCcc
Q 005646 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEVDIPEIDPSC 297 (686)
Q Consensus 219 g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~~~ 297 (686)
...++.+.+|+.... ......+..|...|..++|+|++.++++++. |+.+++|++..+.
T Consensus 130 ~~~d~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 189 (466)
T COG2319 130 SSLDGTVKLWDLSTP------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-------------- 189 (466)
T ss_pred CCCCccEEEEEecCC------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--------------
Confidence 344899999987651 1123457789999999999999999999986 9999999997633
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCC
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDK 375 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg 375 (686)
.+..+.+|...|.+++|+|++ .+++++.|+
T Consensus 190 ------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 190 ------------------------------------------------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred ------------------------------------------------eEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 345556699999999999988 444459999
Q ss_pred cEEEEECCCCeeee-Eee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-E-EEeccCCcEEEEEEccCCCEE
Q 005646 376 TVRLWRVGNDHCLR-VFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-V-DWVDIRQIVTAVCYRPDGQGG 451 (686)
Q Consensus 376 ~V~iWd~~~~~~~~-~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~-~~~~~~~~V~~v~~spdg~~l 451 (686)
+|++||...+..+. .+. |...+ ...|+| ++.++++++.|+.+++|++..... + ....|...+.++.|.|++..+
T Consensus 222 ~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred cEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 99999999888777 455 77765 448999 778999999999999999987664 3 334678899999999999999
Q ss_pred EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE-eCCCcEEEEeCCcc-----------
Q 005646 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQGPNV----------- 519 (686)
Q Consensus 452 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~-s~D~~I~iwd~~~~----------- 519 (686)
++++.|+.+.+||+.......... ...|...+..+.| +.+...++.+ ..|+.+++|+....
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 372 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEee------ecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce
Confidence 889999999999887766443222 2344457999999 5343555555 68889999986532
Q ss_pred ---eeEcCCCCEEEE-EeCCCcEEEEeCCCCC
Q 005646 520 ---IGKYKDGKHIVS-AGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 ---~~~~~dg~~l~s-gs~Dg~V~iWd~~~~~ 547 (686)
+.+.+ ...++. +..++.+.+|+.....
T Consensus 373 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 373 VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS 403 (466)
T ss_pred EEEEEECC-CCCEEEEecCCCceEEEecccCe
Confidence 23333 223333 6788999999988765
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=7.3e-15 Score=144.59 Aligned_cols=275 Identities=12% Similarity=0.133 Sum_probs=196.4
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCcee--cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI--QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l--~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
...|+.++.+|++|+.|..++||++..... .+..+.-.+ ..|...|.|++|....++|++|+.+++|.+.|+.+.+
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~--~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q 138 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMV--RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ 138 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHh--hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccce
Confidence 345778889999999999999998754211 111111112 2466899999999999999999999999999999877
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+..+.. ....+.|..|..+
T Consensus 139 si~V~~~------------------------------------------------------------~~~~~~VY~m~~~ 158 (609)
T KOG4227|consen 139 SIYVANE------------------------------------------------------------NNNRGDVYHMDQH 158 (609)
T ss_pred eeeeecc------------------------------------------------------------cCcccceeecccC
Confidence 4332210 1244689999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCe-ee---eEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--E---Ee
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDH-CL---RVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--D---WV 433 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~-~~---~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~---~~ 433 (686)
|.. .|++.+.+|.|.+||.+..+ .+ ..-........+.|+|....+|++.+..+-+.+||++..+-- . ..
T Consensus 159 P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~ 238 (609)
T KOG4227|consen 159 PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK 238 (609)
T ss_pred CCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccc
Confidence 977 99999999999999998665 22 222256778899999999999999999999999999875421 1 11
Q ss_pred ccCC---cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 434 DIRQ---IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 434 ~~~~---~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
.... .-..+.|+|.|+.+.+--....-.+||+....+.... ...........+.|.+++|.. ...+++|+.+-.
T Consensus 239 ~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k-~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~ 315 (609)
T KOG4227|consen 239 GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK-SDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWG 315 (609)
T ss_pred cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe-ccCCCCcceeeeeeeeeeeec--ceeeeccCcccc
Confidence 2222 2367889999998887655555667787664432210 000000111235577888876 345999999999
Q ss_pred EEEEeCC--------------------------------------cceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 511 VRILQGP--------------------------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 511 I~iwd~~--------------------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
|.+|.++ +.+.|++...+|++.+-...++||.--.
T Consensus 316 i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 316 IHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred eEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 9999642 3467888889999999999999997543
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=2.1e-14 Score=136.79 Aligned_cols=231 Identities=17% Similarity=0.285 Sum_probs=163.4
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC-----CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCc
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG-----QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-----~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~ 296 (686)
.++|.|-.++....++... .. ..|.-+++.+.|.|+. .+|||.+. .+|+|.+...+.......
T Consensus 72 ~Nkvqiv~ld~~s~e~~~~---a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~------ 139 (364)
T KOG0290|consen 72 NNKVQIVQLDEDSGELVED---AN-FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQS------ 139 (364)
T ss_pred CCeeEEEEEccCCCceecc---CC-CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhh------
Confidence 4677777776544433221 11 3589999999999975 46887764 799999874321111100
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECC
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID 374 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~D 374 (686)
+. ....-..+.+++++..|+.-. +|.++|-|
T Consensus 140 -~L----------------------------------------------~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 140 -VL----------------------------------------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred -hh----------------------------------------------ccCcccccCCcccccccccCCcceeEeeccc
Confidence 00 000112366799999998765 89999999
Q ss_pred CcEEEEECCCCee----eeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe---cc-CCcEEEEEEcc
Q 005646 375 KTVRLWRVGNDHC----LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DI-RQIVTAVCYRP 446 (686)
Q Consensus 375 g~V~iWd~~~~~~----~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~-~~~V~~v~~sp 446 (686)
.|..|||++++.. .+.+.|...|..|+|.....+.|++.+.||.||+||++...--+.+ .. ..+...++|++
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 9999999999733 3344599999999999856789999999999999999976533222 22 56788899998
Q ss_pred -CCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 447 -DGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 447 -dg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
|-+++|+-.. ...|.|.|++..... ......|...|++++|.|.....+++++.|.++.+||+..
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tp-------va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTP-------VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCcc-------eehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 5567776444 456999999765432 1235668899999999998777777777777777777543
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.64 E-value=5.5e-13 Score=143.34 Aligned_cols=277 Identities=23% Similarity=0.410 Sum_probs=193.4
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe-eeeeeccCCC-CCcceEEeecCCCCceeeeeccccceeEE
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE-RLTEVDIPEI-DPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+..... ....+... .... . ...
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~-~~~ 126 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDG-----------N-SIL 126 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCc-----------c-eEE
Confidence 456799999999999999999999999999999998876 4444443221 11111111 1111 1 001
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC-CCcEEEEECCCCeeeeEee-CCCCeEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWd~~~~~~~~~~~-h~~~V~~ 399 (686)
......+..+.+|+... .......+..|...|..++|+|++ .+++++. |+.+++|++..+..+..+. |...|.+
T Consensus 127 ~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 127 LASSSLDGTVKLWDLST---PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred eccCCCCccEEEEEecC---CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence 11111122222222221 124567788999999999999999 7888885 9999999999988888887 8999999
Q ss_pred EEEeecCCC-EEEEEEcCCcEEEEecCCCcEEE--EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeE
Q 005646 400 VHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 400 v~fsp~~~~-~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 476 (686)
++|+| ++. ++++++.|+.|++||...+.... ...|.... ...|+|++..+++++.|+.+++|++.......
T Consensus 204 ~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---- 277 (466)
T COG2319 204 LAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL---- 277 (466)
T ss_pred EEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEE----
Confidence 99998 776 56666999999999999777765 44555554 33899999999999999999999998655411
Q ss_pred EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-----------------eeEcCCCCEEEEE-eCCCcE
Q 005646 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-----------------IGKYKDGKHIVSA-GEDSNV 538 (686)
Q Consensus 477 ~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-----------------~~~~~dg~~l~sg-s~Dg~V 538 (686)
... ..|...|.++.|.| ++..+++++.|+.+++|+..+. +.+.+++..++.+ ..|+.+
T Consensus 278 ~~~---~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 278 RTL---SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EEE---ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 111 34568899999999 6677777888888999975432 2221222445554 577788
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
++|++....
T Consensus 354 ~~~~~~~~~ 362 (466)
T COG2319 354 RLWDLRTGK 362 (466)
T ss_pred EeeecCCCc
Confidence 888877643
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=8.8e-14 Score=129.34 Aligned_cols=198 Identities=16% Similarity=0.280 Sum_probs=153.2
Q ss_pred cccCcceeeecCCCccceeeccceEEEEEcCCccc-----cccccccCcee-cccCCceEEEEEeeCCCEEEEEeCCCcE
Q 005646 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSK-----ELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVV 274 (686)
Q Consensus 201 ~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~-----~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (686)
.|++.+..+.+.+++|++++. |.|+-|.+....+ ++..+...+.. .----.|++|-..|..+-|++++.|+.+
T Consensus 60 ahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~ 138 (325)
T KOG0649|consen 60 AHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVI 138 (325)
T ss_pred ccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEE
Confidence 467778888888888888775 9999998864322 22222211111 0112368999999988888888899999
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
+-||+++|+ ..++++||+
T Consensus 139 y~~dlE~G~--------------------------------------------------------------i~r~~rGHt 156 (325)
T KOG0649|consen 139 YQVDLEDGR--------------------------------------------------------------IQREYRGHT 156 (325)
T ss_pred EEEEecCCE--------------------------------------------------------------EEEEEcCCc
Confidence 999999986 346778999
Q ss_pred CCeeEEEe-eCCCEEEEEECCCcEEEEECCCCeeeeEee---C--------CCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 355 GEILDLSW-SKNNYLLSASIDKTVRLWRVGNDHCLRVFP---H--------SNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 355 ~~V~~l~~-s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~---h--------~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
+.|.++.- +.++.+++|+.||++||||.++++++..+. | ...|-+++- +..++++|+ ...+.+|
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLW 232 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEE
Confidence 99999987 445599999999999999999999998875 2 234666665 567887776 5689999
Q ss_pred ecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 423 d~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
.++..+....+..+..+..+.|-.| .+++++..+.|.-|.+..
T Consensus 233 hLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 233 HLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 9999999999999999999999665 677787888899998753
No 192
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=8e-15 Score=148.61 Aligned_cols=289 Identities=18% Similarity=0.213 Sum_probs=199.2
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc-CCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI-PEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
..|..|.+.|..+.|+..|..|+|||.|..|.+||+..+.....+.. +...+....|.+..... ..+.-..++.....
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~-ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR-TIVTSSRDGQVRVS 214 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc-CceeccccCceeee
Confidence 34778999999999999999999999999999999998876655542 22222222222222111 11111112221111
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee----CCC-
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP----HSN- 395 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~- 395 (686)
.+..+.. ......+..|.+.|.-++.-|+. .|++++.|+.+.-.|++++.+-..+. +..
T Consensus 215 ~i~~t~~--------------~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 215 EILETGY--------------VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred eeccccc--------------eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 1111100 01234456799999999999987 89999999999999999886554443 344
Q ss_pred --CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-------EEe------ccCCcEEEEEEccCCCEEEEEecCCcE
Q 005646 396 --YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-------DWV------DIRQIVTAVCYRPDGQGGIVGSMMGDC 460 (686)
Q Consensus 396 --~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-------~~~------~~~~~V~~v~~spdg~~l~~gs~dg~i 460 (686)
....|+.+|.+.++|++|+.|..+|+||.+.-... .+. ...-.|++++|+.++.-++++..|-.|
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 67899999988889999999999999999753211 111 234569999999999899999999999
Q ss_pred EEEeCCCCee---eeee--eEEeeccccCC--CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC---------------Cc
Q 005646 461 RFYNVSDNHL---ELDA--EICVHSKKKAP--CKRITGFQFLPQDSSKVMVSCADSQVRILQG---------------PN 518 (686)
Q Consensus 461 ~iwd~~~~~~---~~~~--~~~~~~~~~~~--~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~---------------~~ 518 (686)
++|.-..+.- .... ........++| ...|.++.|--....++++|+.-|.|.||+- ++
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVN 440 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVN 440 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEe
Confidence 9995432221 0000 00111112333 3458888887557889999999999999983 45
Q ss_pred ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++.-+|--..|||.|-|..|+||...+.+
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ccCCCCCCchhhccCCccceeeecCCccc
Confidence 67778888999999999999999986654
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=6.2e-14 Score=152.00 Aligned_cols=255 Identities=19% Similarity=0.214 Sum_probs=168.7
Q ss_pred cccCccee--ee-cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC--CEEEEEeCCCcEE
Q 005646 201 DKQGEGER--VR-LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG--QYLASAGDDGVVR 275 (686)
Q Consensus 201 ~~~~~~~~--~s-~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~ 275 (686)
..+.++.+ |+ .+++.++.|..+|+|.+||..+........ .......|..+|+.+.|..+- .-+++++.||.|.
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-cccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 34444444 44 355788999999999999998765532111 122345699999999997753 4499999999999
Q ss_pred EEEeecCeeeeeeccCCC------------CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccccc
Q 005646 276 LWQVVEDERLTEVDIPEI------------DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343 (686)
Q Consensus 276 vWd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (686)
.|+++.-....+....+. ...++.|.+. ......++.+.+......+++...... ..
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~---~p~~FiVGTe~G~v~~~~r~g~~~~~~--------~~ 387 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT---DPNHFIVGTEEGKVYKGCRKGYTPAPE--------VS 387 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccC---CCceEEEEcCCcEEEEEeccCCccccc--------cc
Confidence 998765433221111111 1111111111 111222222333333322222221110 11
Q ss_pred CCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECC-CCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcE
Q 005646 344 EKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVG-NDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKV 419 (686)
Q Consensus 344 ~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~-~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V 419 (686)
-+++..+..|.+.|.++.++|=+ .+++++ |-+|+||... ...++..+. +..+|++++|+|.....|+++..||.|
T Consensus 388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred ccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 14455677899999999999987 455555 9999999987 566666665 788899999999888999999999999
Q ss_pred EEEecCCCcE---EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 420 RIWAVLSCHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 420 ~iwd~~~~~~---~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
.|||+..... ....-.....+.+.|+++|+.|++|...|++++|++...
T Consensus 467 ~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 467 DIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 9999976432 222223556778889999999999999999999999643
No 194
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.60 E-value=1.3e-14 Score=144.25 Aligned_cols=167 Identities=23% Similarity=0.369 Sum_probs=136.2
Q ss_pred CCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 250 DGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 250 ~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
..+|..+.|.++.. .|||||.|..|+||.+..+..-. +...+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~------------------------------~~~~V------- 55 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG------------------------------GDMKV------- 55 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC------------------------------CceeE-------
Confidence 45899999999766 99999999999999998765110 00000
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECC--------C-----C---eeeeEe
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG--------N-----D---HCLRVF 391 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~--------~-----~---~~~~~~ 391 (686)
..+..+..|...|+++.|+|+| +|+||+.+|.|.+|... + . ...+.+
T Consensus 56 ----------------~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l 119 (434)
T KOG1009|consen 56 ----------------EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL 119 (434)
T ss_pred ----------------EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEe
Confidence 2345667899999999999999 99999999999999876 2 1 122333
Q ss_pred e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 392 P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 392 ~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
. |...|..++|+| +++++++++.|..+++||+..+++.. ..+|...+..++|.|-++++++-+.|...+.+.+...+
T Consensus 120 r~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred cccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence 3 899999999999 99999999999999999999999884 55688899999999999999999999988888775444
Q ss_pred e
Q 005646 470 L 470 (686)
Q Consensus 470 ~ 470 (686)
.
T Consensus 199 ~ 199 (434)
T KOG1009|consen 199 V 199 (434)
T ss_pred e
Confidence 3
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=9.1e-14 Score=134.32 Aligned_cols=208 Identities=18% Similarity=0.296 Sum_probs=159.5
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
-..+|+|.+|++|+..+|.+-....|.||.....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------- 44 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------- 44 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence 457999999999999999999999999998765441
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECC-CCee---eeEeeCCCCeEEEEEe
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG-NDHC---LRVFPHSNYVTCVHFN 403 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~-~~~~---~~~~~h~~~V~~v~fs 403 (686)
-++.+++..|...|+.+.|+|.. .|++++.|..-++|... .++- +..+.++..++||.|+
T Consensus 45 ---------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws 109 (361)
T KOG1523|consen 45 ---------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS 109 (361)
T ss_pred ---------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence 13678889999999999999988 99999999999999984 4433 3334599999999999
Q ss_pred ecCCCEEEEEEcCCcEEEEecCCCcEE-----EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeee------
Q 005646 404 PVDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL------ 472 (686)
Q Consensus 404 p~~~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~------ 472 (686)
| .++.|++|+.-..|.||-.+...-- ....++..|+++.|+|++-++++|+.|+.+|+|..--.....
T Consensus 110 P-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~p 188 (361)
T KOG1523|consen 110 P-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTP 188 (361)
T ss_pred C-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCC
Confidence 9 9999999999999999988765422 233467789999999999999999999999999853111100
Q ss_pred -eeeEEe---eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 473 -DAEICV---HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 473 -~~~~~~---~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
...+.+ ........+.|.++.|+| .+..|+-.+.|+.+.+-|..
T Consensus 189 Wgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 189 WGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecC
Confidence 000000 000114567889999999 66777777777777766643
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.5e-13 Score=149.62 Aligned_cols=211 Identities=15% Similarity=0.147 Sum_probs=144.1
Q ss_pred ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeecCeeeeeeccCCCCCcc
Q 005646 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSC 297 (686)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~~~~~~~~~~~~~~~~~ 297 (686)
.+..|.|||.+.... +.+..|...+...+|+|||++|+.++.+ ..|++||+.+++..
T Consensus 182 ~~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~------------ 241 (429)
T PRK01742 182 QPYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK------------ 241 (429)
T ss_pred ceEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE------------
Confidence 357899998765432 4466788899999999999999988754 36999999776421
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE-ECCC
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA-SIDK 375 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~-s~Dg 375 (686)
.+..+.+|. ..++|+|+| .|+.+ +.++
T Consensus 242 ------------------------------------------------~l~~~~g~~---~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 242 ------------------------------------------------VVASFRGHN---GAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ------------------------------------------------EEecCCCcc---CceeECCCCCEEEEEEecCC
Confidence 111222332 368999999 66665 4688
Q ss_pred cEEEE--ECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCC-cEEEEeccCCcEEEEEEccCCCEE
Q 005646 376 TVRLW--RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSC-HVVDWVDIRQIVTAVCYRPDGQGG 451 (686)
Q Consensus 376 ~V~iW--d~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~-~~~~~~~~~~~V~~v~~spdg~~l 451 (686)
.+.|| |+.++.......+...+...+|+| +++.|+..+ .+|..+||++... .......+.. ....|+|||+.|
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTL 347 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEE
Confidence 76655 666666554444777788999999 888766555 5788888877532 2222233333 457899999999
Q ss_pred EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEE
Q 005646 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVS 531 (686)
Q Consensus 452 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~s 531 (686)
++.+.++ +.+||+.++...... .. .....+.|+| ||++|+.
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~~lt-----~~-----~~~~~~~~sP----------------------------dG~~i~~ 388 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTEVLS-----ST-----FLDESPSISP----------------------------NGIMIIY 388 (429)
T ss_pred EEEcCCC-EEEEECCCCCeEEec-----CC-----CCCCCceECC----------------------------CCCEEEE
Confidence 8887754 666999877543210 00 0123455666 8999999
Q ss_pred EeCCCcEEEEeCC
Q 005646 532 AGEDSNVYMWNCI 544 (686)
Q Consensus 532 gs~Dg~V~iWd~~ 544 (686)
++.++.+++|.+.
T Consensus 389 ~s~~g~~~~l~~~ 401 (429)
T PRK01742 389 SSTQGLGKVLQLV 401 (429)
T ss_pred EEcCCCceEEEEE
Confidence 9989988888764
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=1.6e-13 Score=132.58 Aligned_cols=201 Identities=14% Similarity=0.218 Sum_probs=161.8
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+.++..+...+|++.....|.||...+... ....++++.|...|++++|+|..+.|+||+.|..-+||....+..
T Consensus 14 tchAwn~drt~iAv~~~~~evhiy~~~~~~~----w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNNHEVHIYSMLGADL----WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred eeeeecCCCceEEeccCCceEEEEEecCCCC----ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 3467788888999999999999998765441 234578899999999999999999999999999999998743321
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
-++...+..|....+++.|+|
T Consensus 90 -----------------------------------------------------------WkptlvLlRiNrAAt~V~WsP 110 (361)
T KOG1523|consen 90 -----------------------------------------------------------WKPTLVLLRINRAATCVKWSP 110 (361)
T ss_pred -----------------------------------------------------------eccceeEEEeccceeeEeecC
Confidence 135556667889999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeE-----eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC------------
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS------------ 426 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~-----~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~------------ 426 (686)
.. .+++||.-+.|.||-++...--.+ ..+...|+++.|+| ++-+|++|+.|++.|++..--
T Consensus 111 ~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pW 189 (361)
T KOG1523|consen 111 KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPW 189 (361)
T ss_pred cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCC
Confidence 98 999999999999998876553322 22678899999999 999999999999999996521
Q ss_pred ------CcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 427 ------CHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 427 ------~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
++++ .+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 190 gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 190 GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 1222 122445679999999999999999999999999987654
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=2e-12 Score=127.54 Aligned_cols=154 Identities=16% Similarity=0.238 Sum_probs=119.2
Q ss_pred CCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEE--cCCcEEEEecCC
Q 005646 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLS 426 (686)
Q Consensus 353 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs--~Dg~V~iwd~~~ 426 (686)
....|.++.++.+. |+.+-.+. |.|||+.+.+.+.++. +...+.++.+++ .+.+++-=+ ..|.|.|||+.+
T Consensus 86 fpt~IL~VrmNr~R-LvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRMNRKR-LVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEEccce-EEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence 34578888887664 44444443 9999999999998886 344455555555 455666432 358999999999
Q ss_pred CcEE-EEeccCCcEEEEEEccCCCEEEEEecCCc-EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 427 CHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 427 ~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
-+.+ ....|++.+.+++|+|+|.+||+++..|+ ||||.+.+++...+... ......|.+++|+| ++++|.+
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------G~~~~~IySL~Fs~-ds~~L~~ 235 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------GTYPVSIYSLSFSP-DSQFLAA 235 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------CceeeEEEEEEECC-CCCeEEE
Confidence 8877 45579999999999999999999999998 89999999887654321 11246699999999 8899999
Q ss_pred EeCCCcEEEEeC
Q 005646 505 SCADSQVRILQG 516 (686)
Q Consensus 505 ~s~D~~I~iwd~ 516 (686)
.+..++|.|+.+
T Consensus 236 sS~TeTVHiFKL 247 (391)
T KOG2110|consen 236 SSNTETVHIFKL 247 (391)
T ss_pred ecCCCeEEEEEe
Confidence 999999999964
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=3.6e-14 Score=145.07 Aligned_cols=206 Identities=19% Similarity=0.361 Sum_probs=158.4
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
+.++.++.||++.|-+-..+- .+.+.+|.+.|.+-.|+|||.-|+|+|+||.|++|.-. |..
T Consensus 76 d~~~i~s~DGkf~il~k~~rV--------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GML--------- 137 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARV--------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GML--------- 137 (737)
T ss_pred ceEEEEcCCceEEEecccchh--------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chH---------
Confidence 467888999999888533221 13467899999999999999999999999999999843 321
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~ 371 (686)
..++.....+|.|++|.|+. .|++.
T Consensus 138 -----------------------------------------------------RStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 138 -----------------------------------------------------RSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred -----------------------------------------------------HHHHhhcCceeEEEEECCCCCceEEec
Confidence 01112245689999999987 55554
Q ss_pred ECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
+ +.+.|=-+.....+..+. |.+-|.|+.|+| ..+++++|+.|-+.+|||.....+.....|..+|++++|.|+ +.
T Consensus 165 g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 165 G--GHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred C--CeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cc
Confidence 4 455555555544444444 999999999999 899999999999999999988877788889999999999999 77
Q ss_pred EEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+++++. ++.|+= +...+.|..++|++ |+..++.|+..|.+.+-.
T Consensus 241 ~~v~S~-nt~R~~-------------------~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 241 YLLWSY-NTARFS-------------------SPRVGSIFNLSWSA-DGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeee-eeeeec-------------------CCCccceEEEEEcC-CCceeeccccCceEEEee
Confidence 777764 244421 22336699999999 899999999999887754
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=2e-12 Score=127.53 Aligned_cols=191 Identities=16% Similarity=0.244 Sum_probs=144.7
Q ss_pred eeecCCCccceeecc--ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 208 RVRLNEEDAMFCSKV--QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d--~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..-++...+|..+.+ +.+++.+.++...-..-. ...+|.++.++.+ .|+.+=++. |.|||+.+.+.+
T Consensus 51 EmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--------fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklL 119 (391)
T KOG2110|consen 51 EMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF--------FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLL 119 (391)
T ss_pred EeecccceeEEEecCCCceEEEEEcccCceEEEEe--------cCCceEEEEEccc--eEEEEEccc-EEEEecccceee
Confidence 334555666555444 458888877654321111 3457999998754 677776654 999999998876
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
+.+... ..+...+.+++.++.
T Consensus 120 hTI~t~-----------------------------------------------------------~~n~~gl~AlS~n~~ 140 (391)
T KOG2110|consen 120 HTIETT-----------------------------------------------------------PPNPKGLCALSPNNA 140 (391)
T ss_pred hhhhcc-----------------------------------------------------------CCCccceEeeccCCC
Confidence 655422 124556777777776
Q ss_pred C-EEEE--EECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCc-EEEEecCCCcEEEEecc---CC
Q 005646 366 N-YLLS--ASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGK-VRIWAVLSCHVVDWVDI---RQ 437 (686)
Q Consensus 366 ~-~L~s--~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~-V~iwd~~~~~~~~~~~~---~~ 437 (686)
+ +|+- ....|.|.|||+.+-+.+..+. |.+.+.|++|+| +|.+|||+|..|+ ||++.+.+++.+..+.- ..
T Consensus 141 n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~ 219 (391)
T KOG2110|consen 141 NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPV 219 (391)
T ss_pred CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceee
Confidence 6 6663 2346899999999999999998 999999999999 9999999999998 79999999988754432 34
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
.|.+++|+||+++|++.+..++|++|.+....
T Consensus 220 ~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 220 SIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 58899999999999999999999999997544
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.56 E-value=6.5e-14 Score=131.76 Aligned_cols=242 Identities=20% Similarity=0.329 Sum_probs=160.6
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
.+++|.+.|+++.|..++ +|.+|..-|.|++|++++......+..
T Consensus 9 vLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~---------------------------------- 53 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRL---------------------------------- 53 (323)
T ss_pred Eeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhh----------------------------------
Confidence 467899999999999877 499999999999999998764443331
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCC-------------------
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGND------------------- 385 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~------------------- 385 (686)
.|...|+.+.--|++.|.+-+.|..+.+|++.-+
T Consensus 54 ---------------------------~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfS 106 (323)
T KOG0322|consen 54 ---------------------------FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFS 106 (323)
T ss_pred ---------------------------hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccce
Confidence 1333444444444444444444444444444321
Q ss_pred ------------------------------eeeeEe-----eCCCCeEEEEEeecCCC--EEEEEEcCCcEEEEecCCCc
Q 005646 386 ------------------------------HCLRVF-----PHSNYVTCVHFNPVDDN--YFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 386 ------------------------------~~~~~~-----~h~~~V~~v~fsp~~~~--~l~sgs~Dg~V~iwd~~~~~ 428 (686)
..+... ...+.+.|..+...++. +++.|..+|.|.+||+.++.
T Consensus 107 l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~ 186 (323)
T KOG0322|consen 107 LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGD 186 (323)
T ss_pred eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCc
Confidence 111111 13355666664332333 56778899999999999873
Q ss_pred EE-----------EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC--eeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 429 VV-----------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN--HLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 429 ~~-----------~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
.+ ....|.++|.++.|.+.-..=++|+.+..+..|++... .++....+++.. ..|.++..-
T Consensus 187 ~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn------pGv~gvrIR 260 (323)
T KOG0322|consen 187 KIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN------PGVSGVRIR 260 (323)
T ss_pred eeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC------CCccceEEc
Confidence 22 33457889999999987777788889999999998643 343333333322 347777777
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCC
Q 005646 496 PQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCG 575 (686)
Q Consensus 496 p~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g 575 (686)
| |++.+||++.|+.||||+..+...
T Consensus 261 p----------------------------D~KIlATAGWD~RiRVyswrtl~p--------------------------- 285 (323)
T KOG0322|consen 261 P----------------------------DGKILATAGWDHRIRVYSWRTLNP--------------------------- 285 (323)
T ss_pred c----------------------------CCcEEeecccCCcEEEEEeccCCc---------------------------
Confidence 7 999999999999999999988652
Q ss_pred CcCCCCCCCCcccccCCC--CCcccccCCCccccCccccccCCCCCCCCCC
Q 005646 576 LKCGNAEKEPQLHVSDDD--SPENLAFAPARFSLGQEYVFESFPKGCATWP 624 (686)
Q Consensus 576 ~~~~~~~~g~~l~~~~~~--~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~ 624 (686)
|+++..| ..+.++|+|| ...+.+++.|..+..|.
T Consensus 286 -----------LAVLkyHsagvn~vAfspd----~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 286 -----------LAVLKYHSAGVNAVAFSPD----CELMAAASKDARISLWK 321 (323)
T ss_pred -----------hhhhhhhhcceeEEEeCCC----CchhhhccCCceEEeee
Confidence 2222222 2345678888 34444678888888886
No 202
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=5.3e-13 Score=137.90 Aligned_cols=265 Identities=18% Similarity=0.176 Sum_probs=183.2
Q ss_pred ccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 248 AHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
.|...-+.|..+|||+|| |||..--.|++||+.+-....+-.+....+....++.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsD------------------------ 104 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSD------------------------ 104 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEecc------------------------
Confidence 477888999999999985 6677788999999987654443332222111111111
Q ss_pred cCCceEEEeCCccccccCCC--eEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEE
Q 005646 327 TSESACVVFPPKVFRILEKP--LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~--~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~f 402 (686)
.....+++-..+...+..+. -..+ --...-.+|+++.-. -|+.++....|.-.++..|+.+..|. ..+.+++|..
T Consensus 105 D~SK~v~L~~DR~IefHak~G~hy~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKYGRHYRT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSI 183 (703)
T ss_pred chhhheEeecCceeeehhhcCeeeee-ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeee
Confidence 11111111111111100000 0000 011233466666544 56666666778889999999999998 5699999999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC-------C-----cEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-------Q-----IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-------~-----~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
++ -..+|++|+.+|.|-.||.++...+...... + .|+++.|+.+|-.+++|+.+|.+.|||++..+.
T Consensus 184 n~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 184 NE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred cC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 99 7889999999999999999988765443322 2 399999999999999999999999999998776
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------------cceeEcCCCCEEEEEeCCC
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------NVIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~--------------~~~~~~~dg~~l~sgs~Dg 536 (686)
.+.. ......+|..+.|.+.+....++......++|||-. +.+|+.|++.++++|-+++
T Consensus 263 l~~k-------dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 263 LLVK-------DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred eeec-------ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 5422 222346799999988666666667777889999843 3488999999999999999
Q ss_pred cEEEEeCCC
Q 005646 537 NVYMWNCIG 545 (686)
Q Consensus 537 ~V~iWd~~~ 545 (686)
.+..|=+..
T Consensus 336 ~m~~yyiP~ 344 (703)
T KOG2321|consen 336 KMHTYYIPS 344 (703)
T ss_pred cceeEEccc
Confidence 888876654
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.56 E-value=1.6e-13 Score=140.33 Aligned_cols=181 Identities=14% Similarity=0.246 Sum_probs=139.6
Q ss_pred CeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
.-..+.+|.+.|.+-.|+|+| -|++++.||.|++|.- +|-...++. ...+|.|++|.|...+.+++.+ +.+.|=-
T Consensus 96 VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKp 172 (737)
T KOG1524|consen 96 VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKP 172 (737)
T ss_pred hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEee
Confidence 345567899999999999999 9999999999999974 444333333 7789999999995555665544 4555555
Q ss_pred cC-CCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 424 VL-SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 424 ~~-~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
+. +.+++.|..|.+.|.++.|+|....+++|+.|-..+|||.....+- ....|..+|++++|.| + ..+
T Consensus 173 L~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf---------~S~~~ey~ITSva~np-d-~~~ 241 (737)
T KOG1524|consen 173 LAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF---------TSAAEEYAITSVAFNP-E-KDY 241 (737)
T ss_pred cccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc---------cCChhccceeeeeecc-c-cce
Confidence 54 4467899999999999999999999999999999999998755432 1345778899999999 4 555
Q ss_pred EEEeCCCcEEEEeCCc----ceeEcCCCCEEEEEeCCCcEEEE
Q 005646 503 MVSCADSQVRILQGPN----VIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 503 ~~~s~D~~I~iwd~~~----~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
++++ -+++|+=.+.. .++|++||..+++|...|.|.+=
T Consensus 242 ~v~S-~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 242 LLWS-YNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeee-eeeeeecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 5554 34566433332 37899999999999999987653
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.6e-13 Score=137.63 Aligned_cols=202 Identities=20% Similarity=0.223 Sum_probs=141.6
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+.+|..+|..+++|+.||.++||++..... ..+..+|.+.|.+|.|+|||++|++-+.| ..+||+++++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 6788999999999999999999998654333 23466799999999999999999999999 899999999965
Q ss_pred eeeeccCCC--CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccccc-CCCeEEeccCCCCeeEEE
Q 005646 285 LTEVDIPEI--DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL-EKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 285 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~l~ 361 (686)
+......+. ....+.|..+.......+........ .+..+....|+-. --+..+...-...|.+++
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~-----------~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGG-----------GVRLCDISLWSGSNFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCC-----------ceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence 555442111 12223333332222222211111111 1111111111110 001111122335799999
Q ss_pred eeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
.+++| +++.|++||.|-|++..+.++++..+ |...|+.+.|+| +.+++++.+.|.+.++..+.-
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 99999 99999999999999999999998887 999999999999 999999999999888887654
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=4.3e-13 Score=147.17 Aligned_cols=238 Identities=16% Similarity=0.222 Sum_probs=163.2
Q ss_pred CccceeeccceEEEEEcCCcc---ccccccccCceecc----cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 214 EDAMFCSKVQRVKVYHCKKRS---KELSALYKGQEIQA----HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~---~~~~~~~~~~~l~~----H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..+++|+.||.|+||+-.... .++.+.. ..+.+ -.+.=.-+.|.....+|+++|.-..|||||........
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw--~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAW--SSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEee--ccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 468899999999999753321 1222111 11222 22222456777765577777777999999998766444
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-C
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-N 365 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~ 365 (686)
.+.. +...-|++|.-+. .
T Consensus 1202 diP~-------------------------------------------------------------~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1202 DIPY-------------------------------------------------------------GSSTLVTALSADLVH 1220 (1387)
T ss_pred eccc-------------------------------------------------------------CCCccceeecccccC
Confidence 3321 1233445554332 2
Q ss_pred C-EEEEEECCCcEEEEECCCCe---eeeEee-CCCC--eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE---EEecc
Q 005646 366 N-YLLSASIDKTVRLWRVGNDH---CLRVFP-HSNY--VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV---DWVDI 435 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~---~~~~~~-h~~~--V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~ 435 (686)
| .++.|-.||.|++||.+... .+..+. |+.. |..+.+.+..-..|++|+.||.|++||++..... ....+
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 3 89999999999999998654 344555 7777 9999999844456999999999999999984322 22222
Q ss_pred ---CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 436 ---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 436 ---~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
.+..+++..+++...+|+|+. +.|.||++...++..... ...........+.+++|+| ..-++++|+.|+.|.
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~--n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKY--NPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVS 1376 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhccccc--CcccccCcCCCcceeeecc-hhHhhhhccCCceEE
Confidence 235999999999999999988 999999998765433211 1111223346679999999 677889999999999
Q ss_pred EEeCCc
Q 005646 513 ILQGPN 518 (686)
Q Consensus 513 iwd~~~ 518 (686)
||...+
T Consensus 1377 iYs~~k 1382 (1387)
T KOG1517|consen 1377 IYSCEK 1382 (1387)
T ss_pred EeecCC
Confidence 997653
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=1.1e-11 Score=130.51 Aligned_cols=187 Identities=14% Similarity=0.148 Sum_probs=128.9
Q ss_pred CCeeEEEeeCCC-EEEEE-ECCCcEEEEECCC-Cee--eeEeeCCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCC-C
Q 005646 355 GEILDLSWSKNN-YLLSA-SIDKTVRLWRVGN-DHC--LRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLS-C 427 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~-s~Dg~V~iWd~~~-~~~--~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~-~ 427 (686)
+....++++|++ +|+++ ..++.|.+|++.. ++. +......+....++|+| ++++|++++. ++.|.+|++.+ +
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCC
Confidence 456678999999 66555 4588999999973 332 23333455678899999 8888887764 88999999964 2
Q ss_pred c---EEEEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeee-eeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 428 H---VVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELD-AEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 428 ~---~~~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
. .+...........++++|+|+++++++ .++.|.+||+.+...... ...... .........+.|+| +++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~---~~~g~~p~~~~~~p-dg~~l 189 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT---TVEGAGPRHMVFHP-NQQYA 189 (330)
T ss_pred CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee---cCCCCCCceEEECC-CCCEE
Confidence 2 223233334567889999999886654 569999999976332110 000000 01123467899999 77777
Q ss_pred EEEeC-CCcEEEEeCCc-------------------------ceeEcCCCCEEEEEeC-CCcEEEEeCCCC
Q 005646 503 MVSCA-DSQVRILQGPN-------------------------VIGKYKDGKHIVSAGE-DSNVYMWNCIGH 546 (686)
Q Consensus 503 ~~~s~-D~~I~iwd~~~-------------------------~~~~~~dg~~l~sgs~-Dg~V~iWd~~~~ 546 (686)
+++.. +++|.+|+... .+.++|+|++|+++.. ++.|.+|+++..
T Consensus 190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 66665 89999998631 1457799999999864 789999999754
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=9.2e-14 Score=142.50 Aligned_cols=177 Identities=20% Similarity=0.309 Sum_probs=139.1
Q ss_pred CeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeec-CCCEEEEEEcCCcEEE
Q 005646 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPV-DDNYFISGSIDGKVRI 421 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~i 421 (686)
.-.++.||.+-|.+|.|+.+| +|++||.|-.+.|||.-..+.+..+. |...|.|+.|-|. +..++++|+.|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 346788999999999999999 99999999999999999989988887 9999999999995 4568889999999999
Q ss_pred EecCCCc-----------EEEEeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeee---EEeeccccCCC
Q 005646 422 WAVLSCH-----------VVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAE---ICVHSKKKAPC 486 (686)
Q Consensus 422 wd~~~~~-----------~~~~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~ 486 (686)
+|+...+ ...+..|...|..++..|++ ..+.+++.||+|+-||++....-.... ..+.. .....
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n-y~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN-YNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH-hchhh
Confidence 9998521 12455677888899999988 789999999999999998643211110 00000 01112
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEc
Q 005646 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY 523 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~ 523 (686)
-...++..+|.++.+|++|+.|--.|+||....+.-+
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~ 237 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSF 237 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCC
Confidence 3467899999999999999999999999965444333
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=4.7e-12 Score=124.34 Aligned_cols=283 Identities=15% Similarity=0.252 Sum_probs=180.9
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec-cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD-IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
-.+..++|++.-..+|++..|-+|++|+-.. .....++ ....++.|+.+.+..... +.+.......++.......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsase---lavgCr~gIciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASE---LAVGCRAGICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcce---eeeeecceeEEEEcCcccc
Confidence 4577889998777789999999999999766 4333333 334566777777665542 2333333333333322222
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC-CCcEEEEECCCCeeeeEee-CCCCeEEEEEeecC
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~ 406 (686)
....+- ........+..-.|| .+|+.|+|.+|| .|++++. |..|+|||..++.++.... ..+.++-+.|+| |
T Consensus 175 ~~r~~~---~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-d 249 (445)
T KOG2139|consen 175 ANRNIR---MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-D 249 (445)
T ss_pred cccccc---cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-C
Confidence 111000 000001123334466 789999999999 8888875 6789999999998887764 668899999999 9
Q ss_pred CCEEEEEEcCCcEEEEecC-CCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe--eeee-----eeEE-
Q 005646 407 DNYFISGSIDGKVRIWAVL-SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH--LELD-----AEIC- 477 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~--~~~~-----~~~~- 477 (686)
+.+|+++.-|+..++|... +-....+.-..+.|...+|+|+|++|+.... |.-++|.+.-.. .... ....
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred CCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeee
Confidence 9999999999999999544 4445567777779999999999998877643 455666653111 1100 0000
Q ss_pred ---e-----eccccCCCCCeEEEEEeCCCCCeEEEEeCCCc--------EEEEeCCc------------------ceeEc
Q 005646 478 ---V-----HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ--------VRILQGPN------------------VIGKY 523 (686)
Q Consensus 478 ---~-----~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~--------I~iwd~~~------------------~~~~~ 523 (686)
+ .....--.+.+.+++|.| .+.+|++.-..+. |.+||... .++|.
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~ 407 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFG 407 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEee
Confidence 0 001111256788899999 7777777655433 55565432 23343
Q ss_pred C---CCCEEEEEeCCCcEEEEeCC
Q 005646 524 K---DGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 524 ~---dg~~l~sgs~Dg~V~iWd~~ 544 (686)
| +|.+|..+-.-|.+.-|.+.
T Consensus 408 pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 408 PLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ecccCCcEEEEEeccCceEeeeeE
Confidence 3 66677777777777766654
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=9.6e-13 Score=135.11 Aligned_cols=198 Identities=21% Similarity=0.361 Sum_probs=138.8
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
..+-.+++|-..|.|.+.+-.. .++..++....+ -.+..|+|++|-|.+. .++.+-.+|.+.++|..-..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~--~~~sklfne~r~-i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------ 253 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEERL-INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------ 253 (636)
T ss_pred CCCcceEEeeccCceEEecchh--hHHHHhhhhccc-ccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------
Confidence 4455788888889998887654 344444433222 2457899999999544 45555678999999872111
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL 368 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L 368 (686)
....+....+.. ++...+.....+. ...|+..+.--.+.|...+|+||| +|
T Consensus 254 -~~t~p~~~~~k~------------~~~f~i~t~ksk~---------------~rNPv~~w~~~~g~in~f~FS~DG~~L 305 (636)
T KOG2394|consen 254 -GATAPSYQALKD------------GDQFAILTSKSKK---------------TRNPVARWHIGEGSINEFAFSPDGKYL 305 (636)
T ss_pred -cCCCCcccccCC------------CCeeEEeeeeccc---------------cCCccceeEeccccccceeEcCCCceE
Confidence 111111100000 0000000000000 013555555556699999999999 99
Q ss_pred EEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE-eccCCcEEEEEEcc
Q 005646 369 LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCYRP 446 (686)
Q Consensus 369 ~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~~~~V~~v~~sp 446 (686)
|+.|.||.+||+|..+.+.+..++ .-+...|++|+| |++||++|+.|--|.||.+..++++.. .+|+..|+.|+|.|
T Consensus 306 A~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 306 ATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999998887777 668899999999 999999999999999999999999854 67999999999998
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.2e-11 Score=134.58 Aligned_cols=215 Identities=12% Similarity=0.055 Sum_probs=143.2
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC---CCcEEEEEeecCeeeeeeccCCCCCcce
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~vWd~~~~~~~~~~~~~~~~~~~~ 298 (686)
...|.++|++.... +.+..+...+...+|+|||+.|+..+. +..|.+|++.+++..
T Consensus 178 ~~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~------------- 236 (429)
T PRK03629 178 PYELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR------------- 236 (429)
T ss_pred ceeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------
Confidence 34688887765432 334457778999999999999987642 357888888766421
Q ss_pred EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEE-EECCC-
Q 005646 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS-ASIDK- 375 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s-~s~Dg- 375 (686)
.+..+.+| +..++|+|+| .|+. .+.++
T Consensus 237 -----------------------------------------------~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 237 -----------------------------------------------QVASFPRH---NGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred -----------------------------------------------EccCCCCC---cCCeEECCCCCEEEEEEcCCCC
Confidence 11112222 3468999999 5654 34455
Q ss_pred -cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC-Cc--EEEEecCCCcEEEEeccCCcEEEEEEccCCCEE
Q 005646 376 -TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-GK--VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG 451 (686)
Q Consensus 376 -~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-g~--V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l 451 (686)
.|.+||+.+++......+...+....|+| +++.|+..+.+ +. |.++|+.++...............+|+|||++|
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 58899999887766555666788999999 99988777654 44 555577777665554444456678999999999
Q ss_pred EEEecC---CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCE
Q 005646 452 IVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKH 528 (686)
Q Consensus 452 ~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~ 528 (686)
+..+.+ ..|++||+.++..... .. . .......|+| ||++
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~L-----t~---~--~~~~~p~~Sp----------------------------DG~~ 387 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVL-----TD---T--FLDETPSIAP----------------------------NGTM 387 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEe-----CC---C--CCCCCceECC----------------------------CCCE
Confidence 886553 3488889877653321 10 0 1122345666 8888
Q ss_pred EEEEeCCCc---EEEEeCCCC
Q 005646 529 IVSAGEDSN---VYMWNCIGH 546 (686)
Q Consensus 529 l~sgs~Dg~---V~iWd~~~~ 546 (686)
|+.++.|+. +++++++..
T Consensus 388 i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 388 VIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEEEEcCCCceEEEEEECCCC
Confidence 888887764 677777543
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.2e-11 Score=135.02 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=126.5
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC---CCcEEEEEeecCeeeeeeccCCCCCcceE
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~ 299 (686)
..|.++|.+... .+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.
T Consensus 182 ~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------------- 238 (435)
T PRK05137 182 KRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------------- 238 (435)
T ss_pred eEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---------------
Confidence 467777764332 2346678889999999999999988764 46899999977652
Q ss_pred EeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE-EEEECCCc-
Q 005646 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKT- 376 (686)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L-~s~s~Dg~- 376 (686)
..+..+.+.+...+|+|+| .| ++.+.++.
T Consensus 239 ------------------------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 239 ------------------------------------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred ------------------------------------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 1122344566788999999 55 46666665
Q ss_pred -EEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEE
Q 005646 377 -VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 377 -V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~ 452 (686)
|.+||+.++.......+....+...|+| +++.|+..+. +| .|++||+.++....+......+....|+|||+.|+
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEE
Confidence 7777988887655544666778899999 8988887764 33 68888988877666555555677789999999998
Q ss_pred EEecC---CcEEEEeCCCCe
Q 005646 453 VGSMM---GDCRFYNVSDNH 469 (686)
Q Consensus 453 ~gs~d---g~i~iwd~~~~~ 469 (686)
....+ ..|.+||+.++.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred EEEcCCCceEEEEEECCCCc
Confidence 87653 257888875543
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=8.3e-12 Score=136.23 Aligned_cols=177 Identities=19% Similarity=0.158 Sum_probs=124.3
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeecCeeeeeeccCCCCCcce
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCI 298 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~~~~~~~~~~~~~~~~~~ 298 (686)
...|.+||..... .+.+..|...+.+.+|+|||++|+..+.+ ..|.+||+.+++..
T Consensus 183 ~~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~------------- 241 (433)
T PRK04922 183 RYALQVADSDGYN--------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE------------- 241 (433)
T ss_pred eEEEEEECCCCCC--------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-------------
Confidence 3468888765432 23455678889999999999999988743 46999998776521
Q ss_pred EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE-EEEECCC-
Q 005646 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDK- 375 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L-~s~s~Dg- 375 (686)
.+..+.+....++|+|+| .| ++.+.++
T Consensus 242 --------------------------------------------------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 242 --------------------------------------------------LVASFRGINGAPSFSPDGRRLALTLSRDGN 271 (433)
T ss_pred --------------------------------------------------EeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence 111123334578999999 55 4556665
Q ss_pred -cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CCc--EEEEecCCCcEEEEeccCCcEEEEEEccCCCEE
Q 005646 376 -TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGK--VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG 451 (686)
Q Consensus 376 -~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~--V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l 451 (686)
.|.+||+.+++......+.......+|+| +++.|+..+. +|. |.++|+.+++.............++|+|||++|
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred ceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 59999999887655444656667899999 8988887764 444 677777777665444333445578999999999
Q ss_pred EEEecCC---cEEEEeCCCCee
Q 005646 452 IVGSMMG---DCRFYNVSDNHL 470 (686)
Q Consensus 452 ~~gs~dg---~i~iwd~~~~~~ 470 (686)
+..+.++ .|.+||+.++..
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred EEEECCCCceeEEEEECCCCCe
Confidence 8875543 599999977654
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.47 E-value=2.8e-12 Score=131.75 Aligned_cols=185 Identities=16% Similarity=0.220 Sum_probs=130.9
Q ss_pred CCCeeEEEeeCCC--EEEEEECCCcEEEEECCCC----------------------------eeeeEee-CCCCeEEEEE
Q 005646 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGND----------------------------HCLRVFP-HSNYVTCVHF 402 (686)
Q Consensus 354 ~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~----------------------------~~~~~~~-h~~~V~~v~f 402 (686)
...|+++.|-|.+ .++.+-.+|.+.+||..-. .++..+. -.+.|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4789999999976 7888888999999976210 0111111 3457888999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
+| |+.+||+.+.||.+||||..+.+++... ..-+...|++|+|||++|++|+.|.-|.||.+...+++. .
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA--------R 369 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA--------R 369 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE--------e
Confidence 99 9999999999999999999998877433 345678999999999999999999999999999887654 3
Q ss_pred ccCCCCCeEEEEEeCCCCC---eEEEEeCCCcEEE----EeCC-----c--ceeEcC------CCCEEEEEeCCCcEEEE
Q 005646 482 KKAPCKRITGFQFLPQDSS---KVMVSCADSQVRI----LQGP-----N--VIGKYK------DGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~---~l~~~s~D~~I~i----wd~~-----~--~~~~~~------dg~~l~sgs~Dg~V~iW 541 (686)
-.+|..+|+.++|.|..-. ..-..+.|++..= .... + ....++ ..-.|.+.+.|-++.+|
T Consensus 370 GqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLW 449 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLW 449 (636)
T ss_pred ccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEE
Confidence 4678899999999972100 0000111111110 0000 0 000000 23478899999999999
Q ss_pred eCCCCC
Q 005646 542 NCIGHE 547 (686)
Q Consensus 542 d~~~~~ 547 (686)
|+....
T Consensus 450 DlteD~ 455 (636)
T KOG2394|consen 450 DLTEDV 455 (636)
T ss_pred ecchhh
Confidence 998755
No 214
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=5e-14 Score=150.84 Aligned_cols=275 Identities=15% Similarity=0.173 Sum_probs=183.4
Q ss_pred CeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
.+..+.||...|.|..|...| ++++|+.|..|+||.+.++.|+.... |.+.|+.++.+. +.-++++++.|..||+|-
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEe
Confidence 455678999999999999999 99999999999999999999999998 999999999987 888999999999999999
Q ss_pred cCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 424 VLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 424 ~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
++++..+ .+.+|.+.|++++|+|-- +.+.||++++||.+-...... ...........+..+.|..
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~----prp~~~~~~~~~~s~~~~~------ 326 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV----PRPLKFTEKDLVDSILFEN------ 326 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccC----CCCCCcccccceeeeeccc------
Confidence 9999887 567899999999999964 677899999999872111110 0000111123355555555
Q ss_pred EEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc-ccccc----CCcEEEecCCCCc
Q 005646 503 MVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS-LERFT----TNASIAIPWCGLK 577 (686)
Q Consensus 503 ~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~-~~~~~----~~~~v~~s~~g~~ 577 (686)
++..++||+.|+.-..|.+.--. .+.+.. +..+. ...+.+....-..
T Consensus 327 ----------------------~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~ 378 (1113)
T KOG0644|consen 327 ----------------------NGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLC 378 (1113)
T ss_pred ----------------------cccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEee
Confidence 45555555555555555543211 000000 00000 1123333333445
Q ss_pred CCCCCCCCcccccCCCCC--cccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccC
Q 005646 578 CGNAEKEPQLHVSDDDSP--ENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCT 655 (686)
Q Consensus 578 ~~~~~~g~~l~~~~~~~~--~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (686)
+|+..+|..++.+.+|.. .++.+.|-... -..++.-|+...+|+.-...+.... ..++++...+
T Consensus 379 vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r---i~msag~dgst~iwdi~eg~pik~y------~~gh~kl~d~----- 444 (1113)
T KOG0644|consen 379 VWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR---IAMSAGYDGSTIIWDIWEGIPIKHY------FIGHGKLVDG----- 444 (1113)
T ss_pred eeecccchhhhhhcccccceeeeeecCCCcH---hhhhccCCCceEeeecccCCcceee------ecccceeecc-----
Confidence 677777888887776654 45556664211 1234667888899995443322211 1224443332
Q ss_pred ccCCCCceEEEEecCCCeEeEEe
Q 005646 656 TSSHAWGLVIVTAGWDGRIRSFL 678 (686)
Q Consensus 656 ~~~~~~g~~ivT~~~DG~Ir~w~ 678 (686)
.++.+|+.|+-..+-|.+-|+.
T Consensus 445 -kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 445 -KFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred -ccCCCCceEecCCCCCceEEec
Confidence 3566799999888888887763
No 215
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=5.2e-12 Score=121.30 Aligned_cols=112 Identities=19% Similarity=0.382 Sum_probs=91.2
Q ss_pred CCCCeeEEEeeCCC-EEE--EEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCC
Q 005646 353 HSGEILDLSWSKNN-YLL--SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLS 426 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~--s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~ 426 (686)
..++|.+++|+|++ .|+ .|..++.|.+||++ ++.+..+. ...++.|.|+| ++++|++++.+ |.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 34579999999999 543 45578899999996 55555554 56788999999 99999998754 6799999999
Q ss_pred CcEEEEeccCCcEEEEEEccCCCEEEEEec------CCcEEEEeCCCC
Q 005646 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDN 468 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~spdg~~l~~gs~------dg~i~iwd~~~~ 468 (686)
.+.+....+.. ++.++|+|||++|++++. |+.++||+....
T Consensus 135 ~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 135 KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 88887766554 789999999999999864 788999998644
No 216
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.46 E-value=1e-11 Score=138.65 Aligned_cols=217 Identities=16% Similarity=0.222 Sum_probs=150.9
Q ss_pred ceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
..++.|...|..++.++. +.+++|||.||+|++|+...-..-. . .
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~--------------------------s-- 1087 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------G--------------------------S-- 1087 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------c--------------------------e--
Confidence 456779999999999875 5999999999999999986533100 0 0
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe-------eeeEee--
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-------CLRVFP-- 392 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~-------~~~~~~-- 392 (686)
.+...++.-....+.++...+.+ .+|.++.||.|++.+++... +.+...
T Consensus 1088 ---------------------~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~ 1146 (1431)
T KOG1240|consen 1088 ---------------------ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK 1146 (1431)
T ss_pred ---------------------eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc
Confidence 01122333345678888888888 99999999999999987621 111112
Q ss_pred CCC-CeEEEEEeecCCC-EEEEEEcCCcEEEEecCCCcEEE---EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 393 HSN-YVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVD---WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 393 h~~-~V~~v~fsp~~~~-~l~sgs~Dg~V~iwd~~~~~~~~---~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
..+ .|..-+|...... .++.+..-+.|..||++...... .....+.|++++.+|.++++++|+..|.+-+||++-
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 223 3444455543445 77778888999999999876542 233467899999999999999999999999999986
Q ss_pred CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEe--CCCcEEEEeCCC
Q 005646 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAG--EDSNVYMWNCIG 545 (686)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs--~Dg~V~iWd~~~ 545 (686)
+.+... ....+..+|..+..+|-. +.....++++ ..+-|-+|++.+
T Consensus 1227 ~~~i~s-------w~~P~~~~i~~v~~~~~~-------------------------~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1227 RVPILS-------WEHPARAPIRHVWLCPTY-------------------------PQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred Cceeec-------ccCcccCCcceEEeeccC-------------------------CCCceEEEecccCCCceeeeeccc
Confidence 654432 233445778888887722 1223444443 456788888887
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
+.
T Consensus 1275 g~ 1276 (1431)
T KOG1240|consen 1275 GL 1276 (1431)
T ss_pred Cc
Confidence 64
No 217
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.44 E-value=3.7e-13 Score=130.30 Aligned_cols=185 Identities=15% Similarity=0.223 Sum_probs=135.8
Q ss_pred CCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCC-CEEEEEEcCCcEEEEecCCCcE
Q 005646 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD-NYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 354 ~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~-~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
-..|.-+.|..+. .|.....|+.|.+|++....-...+. ....+.++.|+| ++ .+|.+...|-+|.+|.+.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEecccee
Confidence 3567788898888 45566788999999999988887777 778999999999 77 6667777899999999999988
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE--eC
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS--CA 507 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~--s~ 507 (686)
......+..+..++|+|||++.+..+.-.....+++...+ ...+.+..+...-..+++.|+| +++.|++- .-
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~-----~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~L 200 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK-----AWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVL 200 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH-----HHHHHHhcCCCcccccCceECC-CCcEEEEecchh
Confidence 7766667778999999999999988764332222222111 0001111222334578999999 67776663 34
Q ss_pred CCcEEEEeC---CcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 508 DSQVRILQG---PNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 508 D~~I~iwd~---~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+-.|..|+- ...+.++|.+++|+.|+.|+.+||-|--+
T Consensus 201 eykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 201 EYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred hheeeeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 566666664 34678999999999999999999866544
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.43 E-value=3.5e-13 Score=136.04 Aligned_cols=228 Identities=12% Similarity=0.175 Sum_probs=167.2
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
.-.-..+.++.+|++|+.||.-|.|-.+|..++....++...+......++.....-.+ ...
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AV------------------AQK 190 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAV------------------AQK 190 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHh------------------hhh
Confidence 34456789999999999999999999999999999888876654222111111100000 000
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCC
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD 407 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~ 407 (686)
....+ ++-.+..++.++.| ..|..|.|.|.. +|++++..|.++--|+.+|+.+..+. ..+.+..+.-+| -.
T Consensus 191 ~y~yv-----YD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~N 263 (545)
T KOG1272|consen 191 KYVYV-----YDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YN 263 (545)
T ss_pred ceEEE-----ecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-cc
Confidence 01111 22223456666655 578999999999 88899999999999999999999888 778899999999 78
Q ss_pred CEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCC
Q 005646 408 NYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (686)
Q Consensus 408 ~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 486 (686)
..+-+|...|+|.+|.....+.+ .+..|.++|.+|++.++|+++|+.+.|..|+|||++.-.... .... .
T Consensus 264 aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~-------t~~t--p 334 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH-------TYRT--P 334 (545)
T ss_pred ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc-------eeec--C
Confidence 89999999999999999887654 778899999999999999999999999999999998765221 1111 1
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 487 KRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
.+...++|+. .-+++.+....|.||
T Consensus 335 ~~a~~ls~Sq---kglLA~~~G~~v~iw 359 (545)
T KOG1272|consen 335 HPASNLSLSQ---KGLLALSYGDHVQIW 359 (545)
T ss_pred CCcccccccc---ccceeeecCCeeeee
Confidence 3356677776 334444444455555
No 219
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.40 E-value=8.3e-11 Score=114.19 Aligned_cols=188 Identities=18% Similarity=0.199 Sum_probs=134.2
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEE-eCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-GDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~vWd~~~~~~ 284 (686)
-++|+++|+++|+...- ++.|.|.... ++..++.. -..|.-|.|..|..+++.+ ..|+.|.+|++...+-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tl--q~~qlf~c------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETL--QLHQLFLC------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchh--hHHHHHHH------HHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 57899999999998876 8888876543 22222211 3467788999888776654 6788999999987652
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
.. .+......+..+.|||
T Consensus 84 ~c--------------------------------------------------------------kIdeg~agls~~~WSP 101 (447)
T KOG4497|consen 84 YC--------------------------------------------------------------KIDEGQAGLSSISWSP 101 (447)
T ss_pred EE--------------------------------------------------------------EeccCCCcceeeeECC
Confidence 22 2233557889999999
Q ss_pred CC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC--------------------------
Q 005646 365 NN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-------------------------- 416 (686)
Q Consensus 365 ~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-------------------------- 416 (686)
+| .|.+...|-.|.+|.+.+.++...-.....+..++|+| ++++.+.++.-
T Consensus 102 dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D 180 (447)
T KOG4497|consen 102 DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID 180 (447)
T ss_pred CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc
Confidence 99 77788899999999999988766554455668899999 89888777542
Q ss_pred ----------CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 417 ----------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 417 ----------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
..+.+||-.-.-.+....-.-.+..+.|+|.++++++|+.|+.+|+.+-
T Consensus 181 ltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred ccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 1233333221111112222356888999999999999999999998764
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1e-11 Score=135.35 Aligned_cols=208 Identities=15% Similarity=0.174 Sum_probs=137.5
Q ss_pred eeeecCCCccceeecc---ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEEEEEeecC
Q 005646 207 ERVRLNEEDAMFCSKV---QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVED 282 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d---~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~vWd~~~~ 282 (686)
..++++++.++..+.+ ..|++|++....... ...+.+| ...++|+|||++|+.++ .+|.+.||.+...
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-----l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-----VASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-----EecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 4578889988887654 369999886543211 1123334 34689999999888765 6888777755321
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
. .....+..|...+....|
T Consensus 281 ~-------------------------------------------------------------~~~~~lt~~~~~~~~~~w 299 (429)
T PRK01742 281 G-------------------------------------------------------------GTPSQLTSGAGNNTEPSW 299 (429)
T ss_pred C-------------------------------------------------------------CCeEeeccCCCCcCCEEE
Confidence 1 012233445667788999
Q ss_pred eCCC-EEEEE-ECCCcEEEEECCCC-eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcE
Q 005646 363 SKNN-YLLSA-SIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV 439 (686)
Q Consensus 363 s~~~-~L~s~-s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V 439 (686)
+|+| .|+.+ ..++..+||++... .....+.+.. .+..|+| ++++|+..+.++ +.+||+.+++...+... ...
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~ 374 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLD 374 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCC
Confidence 9999 55544 46788899987542 2223334443 4678999 999998888765 56699998876544322 234
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCC--CCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
..+.|+|||++|+.++.+|.+.+|++. ++.... ....|.+.+...+|+|
T Consensus 375 ~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~--------~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA--------RLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCCceE--------EccCCCCCCCCcccCC
Confidence 568899999999999999988888753 232221 1223446678888888
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=7e-11 Score=117.49 Aligned_cols=205 Identities=14% Similarity=0.193 Sum_probs=155.6
Q ss_pred ecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
.....++|..++.. || .|++|-.+|.+.+|....+...
T Consensus 101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h---------------------------------------- 138 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH---------------------------------------- 138 (412)
T ss_pred cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc----------------------------------------
Confidence 33456778888765 34 6888889999999998755411
Q ss_pred ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECC--CcEEEEECCCCeeeeEee---------
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID--KTVRLWRVGNDHCLRVFP--------- 392 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~D--g~V~iWd~~~~~~~~~~~--------- 392 (686)
..++..+..+ ..+..|.-++.. .+++|+.. ..+.|||+.+.+.+..-.
T Consensus 139 ------------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 139 ------------------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred ------------------cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 0122333333 445556555654 67779998 899999999886655433
Q ss_pred -CCCCeEEEEEeecC--CCEEEEEEcCCcEEEEecCCCc-EE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 393 -HSNYVTCVHFNPVD--DNYFISGSIDGKVRIWAVLSCH-VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 393 -h~~~V~~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~~-~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
-.-.++.+.|-| . ...|++++.-+.||+||.+.++ .+ .+.-...+++++...|+|+.+++|...|.+..||++.
T Consensus 200 rVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~ 278 (412)
T KOG3881|consen 200 RVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG 278 (412)
T ss_pred eeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccC
Confidence 234578899998 5 7889999999999999998764 34 4444578899999999999999999999999999998
Q ss_pred CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+++... ..++-.+.|.++..+| .+++|+++|-|..|||+|+++.+
T Consensus 279 ~kl~g~-------~~kg~tGsirsih~hp----------------------------~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 279 GKLLGC-------GLKGITGSIRSIHCHP----------------------------THPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ceeecc-------ccCCccCCcceEEEcC----------------------------CCceEEeeccceeEEEeecccch
Confidence 876431 1344557799999999 78999999999999999999865
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=5.1e-11 Score=114.45 Aligned_cols=148 Identities=20% Similarity=0.376 Sum_probs=103.3
Q ss_pred eEEEeeCCC-E-EEEEEC--C-------CcEEEEECCC-CeeeeEee--CCCCeEEEEEeecCCCEEEEE--EcCCcEEE
Q 005646 358 LDLSWSKNN-Y-LLSASI--D-------KTVRLWRVGN-DHCLRVFP--HSNYVTCVHFNPVDDNYFISG--SIDGKVRI 421 (686)
Q Consensus 358 ~~l~~s~~~-~-L~s~s~--D-------g~V~iWd~~~-~~~~~~~~--h~~~V~~v~fsp~~~~~l~sg--s~Dg~V~i 421 (686)
..+.|+++| + ++.... | +...||.++. +.....+. ..++|.+++|+| +++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 478899999 3 333331 2 3456666633 23344443 556799999999 88876554 46789999
Q ss_pred EecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec---CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC
Q 005646 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 422 wd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~ 498 (686)
||++ ++.+..+. ...++.+.|+|+|++|++++. .|.+.+||+.+.+..... ....++.++|+|
T Consensus 88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~----------~~~~~t~~~WsP-- 153 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF----------EHSDATDVEWSP-- 153 (194)
T ss_pred EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc----------ccCcEEEEEEcC--
Confidence 9997 44443333 467789999999999999875 467999999876654321 123478899999
Q ss_pred CCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeC------CCcEEEEeCCCC
Q 005646 499 SSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGE------DSNVYMWNCIGH 546 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~------Dg~V~iWd~~~~ 546 (686)
||++|+++.. |+.++||++...
T Consensus 154 --------------------------dGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 154 --------------------------DGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred --------------------------CCCEEEEEEeccceeccccEEEEEecCe
Confidence 7777777753 788999998754
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=3.7e-10 Score=109.67 Aligned_cols=178 Identities=13% Similarity=0.206 Sum_probs=118.2
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee-cCeeeeeeccCCCCCcceEE
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV-EDERLTEVDIPEIDPSCIYF 300 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~-~~~~~~~~~~~~~~~~~~~~ 300 (686)
.+.|.|||-.+ .+.+.. + .-..+|.++.+.++ .|+..- .+.|.||.+. +.+.++.+.....+-..+..
T Consensus 74 pNkviIWDD~k-~~~i~e------l-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 74 PNKVIIWDDLK-ERCIIE------L-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred CceEEEEeccc-CcEEEE------E-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEee
Confidence 46899999322 222211 1 14578999999876 566664 4789999988 55556665544332222222
Q ss_pred eecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCc-EE
Q 005646 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT-VR 378 (686)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~-V~ 378 (686)
.+.....+.+.-....+...+..+... ...+...+.+|...|.|++.+.+| ++||+|..|| ||
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~---------------~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLAST---------------KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhc---------------CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 221111111111111111111111100 001346778999999999999999 9999999998 79
Q ss_pred EEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 379 LWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 379 iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
|||..++..+..+. ....|.||+|+| +..+|+++|..|+|.|+.++.
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 99999999999998 567899999999 999999999999999998875
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.5e-10 Score=125.97 Aligned_cols=176 Identities=19% Similarity=0.205 Sum_probs=116.3
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeecCeeeeeeccCCCCCcceE
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~~~~~~~~~~~~~~~~~~~ 299 (686)
..+.++|.+... .+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 176 ~~L~~~D~dG~~--------~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------- 234 (427)
T PRK02889 176 YQLQISDADGQN--------AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------- 234 (427)
T ss_pred cEEEEECCCCCC--------ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-------------
Confidence 456666653322 13345678889999999999999887643 359999998765211
Q ss_pred EeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EEECCCcE
Q 005646 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKTV 377 (686)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~s~Dg~V 377 (686)
+....+.+...+|+|+| .|+ +.+.++..
T Consensus 235 --------------------------------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 235 --------------------------------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred --------------------------------------------------eecCCCCccceEECCCCCEEEEEEccCCCc
Confidence 11122345678999999 554 67778887
Q ss_pred EEEEC--CCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CCcEEEEec--CCCcEEEEeccCCcEEEEEEccCCCEEE
Q 005646 378 RLWRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAV--LSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 378 ~iWd~--~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~--~~~~~~~~~~~~~~V~~v~~spdg~~l~ 452 (686)
.||.+ ..+.......+...+....|+| |++.|+..+. +|...||.+ .++...............+|+|||++|+
T Consensus 265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred eEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 77754 4444333223555667889999 8988776654 466666654 4555433332233345678999999998
Q ss_pred EEecCC---cEEEEeCCCCee
Q 005646 453 VGSMMG---DCRFYNVSDNHL 470 (686)
Q Consensus 453 ~gs~dg---~i~iwd~~~~~~ 470 (686)
..+.++ .|++||+.++..
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred EEEccCCcEEEEEEECCCCCe
Confidence 877654 599999987654
No 225
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=1.9e-10 Score=125.34 Aligned_cols=175 Identities=17% Similarity=0.148 Sum_probs=124.3
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeecCeeeeeeccCCCCCcceE
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~~~~~~~~~~~~~~~~~~~ 299 (686)
..|.+++..... .+.+..+...+...+|+|||++|+.+..+ ..|++||+.+++..
T Consensus 170 ~~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-------------- 227 (417)
T TIGR02800 170 YELQVADYDGAN--------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-------------- 227 (417)
T ss_pred ceEEEEcCCCCC--------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--------------
Confidence 356666654322 23455577789999999999999987654 47999998776421
Q ss_pred EeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EEECCC--
Q 005646 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDK-- 375 (686)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~s~Dg-- 375 (686)
.+..+.+.+..++|+|++ .|+ +.+.++
T Consensus 228 -------------------------------------------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 228 -------------------------------------------------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred -------------------------------------------------EeecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 111233455678999998 554 555444
Q ss_pred cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC-C--cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEE
Q 005646 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-G--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-g--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~ 452 (686)
.|.+||+.+++......+........|+| +++.|+..+.. + .|.++|+.+++...+......+..+.|+|+|++++
T Consensus 259 ~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred cEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence 58899998876655544555566789999 88888766643 3 58888988887666655566677889999999999
Q ss_pred EEecCC---cEEEEeCCCCe
Q 005646 453 VGSMMG---DCRFYNVSDNH 469 (686)
Q Consensus 453 ~gs~dg---~i~iwd~~~~~ 469 (686)
.++.++ .|.+||+.++.
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred EEEccCCceEEEEEeCCCCC
Confidence 988776 78899987654
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=5.2e-11 Score=118.43 Aligned_cols=224 Identities=13% Similarity=0.192 Sum_probs=161.4
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCC--CcEEEEEeecC
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDD--GVVRLWQVVED 282 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D--g~I~vWd~~~~ 282 (686)
+......+..+++|-.+|.+.+|..+.....-..+ ..+..| ..+..|.-++. ...+|+||.. ..+.|||+.+.
T Consensus 108 I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l---~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~ 183 (412)
T KOG3881|consen 108 IKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKL---IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS 183 (412)
T ss_pred ccchhhcCCEEEEEecCCcEEEEeccCCccccccc---eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc
Confidence 34445566788899999999999887433211111 122223 45666666664 4466779998 88999999887
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
+.+..-+....+.-. -. -.-.++++.|
T Consensus 184 ~qiw~aKNvpnD~L~-----------------------------------------------Lr------VPvW~tdi~F 210 (412)
T KOG3881|consen 184 KQIWSAKNVPNDRLG-----------------------------------------------LR------VPVWITDIRF 210 (412)
T ss_pred eeeeeccCCCCcccc-----------------------------------------------ce------eeeeecccee
Confidence 543322211100000 00 1124567777
Q ss_pred eCC--C-EEEEEECCCcEEEEECCCC-eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEecc
Q 005646 363 SKN--N-YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDI 435 (686)
Q Consensus 363 s~~--~-~L~s~s~Dg~V~iWd~~~~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~ 435 (686)
-+. . .|++++.-+.||+||.+.+ +++..|. ...+|+++...| +++++++|..-|.+..||++++++. .+.+.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCc
Confidence 766 4 9999999999999999865 5677777 788999999999 9999999999999999999999887 35678
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.+.|++|..+|.++++++++-|..+||||+.+.++....- -...++++-+.+
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY---------vKs~lt~il~~~ 341 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY---------VKSRLTFILLRD 341 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh---------hhccccEEEecC
Confidence 8999999999999999999999999999999876543211 123466776665
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.34 E-value=3.3e-10 Score=109.98 Aligned_cols=157 Identities=14% Similarity=0.231 Sum_probs=118.3
Q ss_pred CCCCeeEEEeeCCCEEEEEECCCcEEEEECC-CCeeeeEee---CCCCeEEEEEeec-CCCEEEE-EEcCCcEEEEecCC
Q 005646 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVG-NDHCLRVFP---HSNYVTCVHFNPV-DDNYFIS-GSIDGKVRIWAVLS 426 (686)
Q Consensus 353 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~-~~~~~~~~~---h~~~V~~v~fsp~-~~~~l~s-gs~Dg~V~iwd~~~ 426 (686)
-..+|.++.+.++. |+.. ....|.||... ..+.++.+. .+..+-+ ..|. +..+|+. |-.-|.|+|-|+..
T Consensus 93 f~~~I~~V~l~r~r-iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~--~~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDR-IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCS--LCPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred eccceeeEEEcCCe-EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEe--ecCCCCceEEEcCCCccceEEEEEhhh
Confidence 45688999988775 2222 36789999987 455666655 3334333 3342 3334443 34569999999987
Q ss_pred CcE---EEEeccCCcEEEEEEccCCCEEEEEecCCc-EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 427 CHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 427 ~~~---~~~~~~~~~V~~v~~spdg~~l~~gs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
.+. .....|...|.+++.+.+|..+|+++..|+ |||||..++.+..+.. .......|.+++|+|
T Consensus 169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A~iy~iaFSp------ 236 (346)
T KOG2111|consen 169 TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRADIYCIAFSP------ 236 (346)
T ss_pred cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchheEEEEEeCC------
Confidence 665 678899999999999999999999999998 8999999998776432 233446799999999
Q ss_pred EEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 503 MVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 503 ~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|..+|+++|+-|+|+|+.+....
T Consensus 237 ----------------------~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 237 ----------------------NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----------------------CccEEEEEcCCCeEEEEEeecCC
Confidence 88999999999999999988754
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2.1e-10 Score=124.73 Aligned_cols=208 Identities=12% Similarity=0.103 Sum_probs=133.9
Q ss_pred eeeecCCCccceee---ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEE-eCCC--cEEEEEee
Q 005646 207 ERVRLNEEDAMFCS---KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-GDDG--VVRLWQVV 280 (686)
Q Consensus 207 ~~~s~~~~~l~~g~---~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg--~I~vWd~~ 280 (686)
-+++++|+.++..+ ....+.+|++...... .+....+.+...+|+|||++|+.. +.+| .|.+||+.
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--------~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--------EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 45788888887654 2356888887653221 112223334568999999988765 4455 47788887
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
+++. ..+..+...+...
T Consensus 276 tg~~---------------------------------------------------------------~~lt~~~~~~~~~ 292 (429)
T PRK03629 276 SGQI---------------------------------------------------------------RQVTDGRSNNTEP 292 (429)
T ss_pred CCCE---------------------------------------------------------------EEccCCCCCcCce
Confidence 6542 1112233456788
Q ss_pred EeeCCC-EEEEEEC-CCcEEEE--ECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCCCcEEEEe
Q 005646 361 SWSKNN-YLLSASI-DKTVRLW--RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 361 ~~s~~~-~L~s~s~-Dg~V~iW--d~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~~~~~~~~ 433 (686)
.|+|+| .|+..+. ++...|| |+.++.......+.....+..|+| ++++|+..+.+ ..|.+||+.++....+.
T Consensus 293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred EECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence 999999 6766664 3444555 666665443333555667899999 99888776644 35888999988765544
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCc---EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGD---CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.. .......|+|||++|+.++.++. +.++++....... ...+...+...+|+|
T Consensus 372 ~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~---------l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 372 DT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR---------LPATDGQVKFPAWSP 427 (429)
T ss_pred CC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEE---------CccCCCCcCCcccCC
Confidence 32 23456789999999999888765 6777775443221 122445677778877
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.2e-11 Score=124.03 Aligned_cols=291 Identities=15% Similarity=0.200 Sum_probs=199.9
Q ss_pred CeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecC-CCEEEEEEcCCcEEE
Q 005646 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD-DNYFISGSIDGKVRI 421 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~-~~~l~sgs~Dg~V~i 421 (686)
....|.+|.+-|..+.|+..| .|+++|.|..|.+||...++....|. |...|....|-|.. ..-+++++.||.||+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 345678899999999999999 99999999999999999998887776 98889888898853 457899999999999
Q ss_pred EecCCCcE----EEEeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 422 WAVLSCHV----VDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 422 wd~~~~~~----~~~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
=.+..... .....|.++|..++.-|+. .-|.+++.|+.+.-+|++.+....... .........-....++..|
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--CREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--eeccCCccceeeeeEecCC
Confidence 87754332 2566789999999999965 457889999999999998765433221 1111111123578899999
Q ss_pred CCCCeEEEEeCCCcEEEEeCC---------------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCC-
Q 005646 497 QDSSKVMVSCADSQVRILQGP---------------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEE- 548 (686)
Q Consensus 497 ~~~~~l~~~s~D~~I~iwd~~---------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~- 548 (686)
.+...+++++.|..+|+||.. ++++++.++.-|.+.-.|-.||+++-.-+..
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 888899999999999999854 2345554666666666788899995443321
Q ss_pred -CCccccc--ccc-ccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCC
Q 005646 549 -PAHDQAK--TIR-SLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 624 (686)
Q Consensus 549 -~~~~~~~--~~~-~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~ 624 (686)
+.....+ -+. .|.++.+.. .-..+-.|-|- ..+++++|.++.+-+|.
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~-------------------------TVKgVNFfGPr----sEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSR-------------------------TVKGVNFFGPR----SEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhccccccc-------------------------ccceeeeccCc----cceEEecCccceEEEEe
Confidence 1111100 000 011111100 00112235564 56777899999999999
Q ss_pred CCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 625 EEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
..+...+.-. .+ ++. ..+| ..+|++-=+|||.|-|--||||--
T Consensus 423 K~t~eii~~M---eg-Dr~-------VVNC-LEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 423 KKTGEIIRFM---EG-DRH-------VVNC-LEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cchhHHHHHh---hc-ccc-------eEec-cCCCCCCchhhccCCccceeeecC
Confidence 6655421110 00 101 1122 256888889999999999999954
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.3e-09 Score=113.41 Aligned_cols=296 Identities=16% Similarity=0.204 Sum_probs=186.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEE-----eC-----CCcEEE
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-----GD-----DGVVRL 276 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-----s~-----Dg~I~v 276 (686)
..++.+|.. ..-+.++.++|++....... +.--...+.++.|+|-|.||.|- -. ...+++
T Consensus 40 ~~~S~~G~l-fA~~~~~~v~i~~~~~~~~~---------lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 40 FAYSNNGRL-FAYSDNQVVKVFEIATLKVV---------LCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred EEEcCCCcE-EEEEcCCeEEEEEccCCcEE---------EEeccceeeeeeecccccccccccccccccCCCCCCCceee
Confidence 344444444 44566778999987654311 11112268999999999999873 11 245779
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|++.++.....+.......++..|+.+....... .......+....++ .+.+.+ |...
T Consensus 110 ~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-----------------v~nev~f~~~~~f~---~~~~kl--~~~~ 167 (566)
T KOG2315|consen 110 YNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-----------------VSNEVQFYDLGSFK---TIQHKL--SVSG 167 (566)
T ss_pred eeeccceehhheehhhhcCcccccccchhhhhhh-----------------hcceEEEEecCCcc---ceeeee--eccc
Confidence 9999966555555544444444444433211100 00111111111111 122222 5678
Q ss_pred eeEEEeeCCC---EEEE-----EECCCcEEEEECCCCeeee-----EeeCCCCeEEEEEeecCCCEEEEEEc--------
Q 005646 357 ILDLSWSKNN---YLLS-----ASIDKTVRLWRVGNDHCLR-----VFPHSNYVTCVHFNPVDDNYFISGSI-------- 415 (686)
Q Consensus 357 V~~l~~s~~~---~L~s-----~s~Dg~V~iWd~~~~~~~~-----~~~h~~~V~~v~fsp~~~~~l~sgs~-------- 415 (686)
|..+.+||.. .+++ .+.-..|+||.......-. .|-..+. ..+.|++....+|+..+.
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadk-vqm~WN~~gt~LLvLastdVDktn~S 246 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADK-VQMKWNKLGTALLVLASTDVDKTNAS 246 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccce-eEEEeccCCceEEEEEEEeecCCCcc
Confidence 8999999974 4543 4566789999987332222 2222333 346777733344444443
Q ss_pred ---CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEE--EecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 416 ---DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 416 ---Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
..++++.++....+..-....++|.+++|+|+|+.+++ |-+--.+.|||++..- .. ....++-+
T Consensus 247 YYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~----------df~egpRN 315 (566)
T KOG2315|consen 247 YYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VF----------DFPEGPRN 315 (566)
T ss_pred ccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eE----------eCCCCCcc
Confidence 24688888886666666667899999999999987665 6667889999997543 22 12336678
Q ss_pred EEEEeCCCCCeEEEEeCC---CcEEEEeCCc-------------ceeEcCCCCEEEEEeC------CCcEEEEeCCCCC
Q 005646 491 GFQFLPQDSSKVMVSCAD---SQVRILQGPN-------------VIGKYKDGKHIVSAGE------DSNVYMWNCIGHE 547 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~D---~~I~iwd~~~-------------~~~~~~dg~~l~sgs~------Dg~V~iWd~~~~~ 547 (686)
++-|+| .+.+++.++-+ |.|-|||..+ ...|+|||++|+|+.. |+.++||++....
T Consensus 316 ~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 316 TAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred ceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 899999 77877777654 8999999753 4679999999999874 7899999998754
No 231
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=8.2e-11 Score=114.99 Aligned_cols=290 Identities=15% Similarity=0.233 Sum_probs=171.6
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccC------------CceEEEEEeeCCC--EEEEEeCC
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD------------GSILTMKFSPDGQ--YLASAGDD 271 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~Lasgs~D 271 (686)
...|...|++|++|..+|+|.++.-.+..+. ...-..+++.|. ..|..+.|.++++ .++..+.|
T Consensus 30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 30 AVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 4567789999999999999999986554431 111122344454 4689999998654 56667789
Q ss_pred CcEEEEEeecCeeee-eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 272 GVVRLWQVVEDERLT-EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 272 g~I~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
.+|++|.+....... ....+... ....+..+-. - .-+..+..+.. .|.+.+
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~---------~~~~~~~lr~--------p-~~~~~~~~vea----------~prRv~ 159 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEG---------PPGTITSLRL--------P-VEGRHDLEVEA----------SPRRVY 159 (433)
T ss_pred cceeeeeeeccccccccccccccC---------CCCccceeec--------e-eeccccceeee----------eeeeec
Confidence 999999987644222 11111100 0000000000 0 00000111111 233333
Q ss_pred -ccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCC-CeeeeEe--e-C-----CCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 351 -HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVF--P-H-----SNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 351 -~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~-~~~~~~~--~-h-----~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
.+|+--|.+++++.|+..+.++.|=.|.+|++.- .++.... . + ..-|++..|+|...+.|+-.+..|+||
T Consensus 160 aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred cccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 3799999999999999444455688999999873 3332222 1 2 346899999998888999999999999
Q ss_pred EEecCCCcEEE----Ee-------------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe-eeeeeeEEeeccc
Q 005646 421 IWAVLSCHVVD----WV-------------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH-LELDAEICVHSKK 482 (686)
Q Consensus 421 iwd~~~~~~~~----~~-------------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 482 (686)
+-|++...+-. ++ ..-..|..+.|+++|+++++-.. -+|++||+.... ..... .++...
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~--~vh~~l 316 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY--PVHEYL 316 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE--eehHhH
Confidence 99999543211 11 11234788999999999997543 589999995433 22111 111111
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+. .|...-.... |+| .-.++++-++.+++||+....++++++..+.
T Consensus 317 r~----------------kLc~lYEnD~--Ifd-KFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 317 RS----------------KLCSLYENDA--IFD-KFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HH----------------HHHHHhhccc--hhh-eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 00 0000000000 000 0012333478899999999999999977665
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.30 E-value=1.7e-09 Score=114.45 Aligned_cols=255 Identities=16% Similarity=0.170 Sum_probs=157.0
Q ss_pred ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCc
Q 005646 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296 (686)
Q Consensus 217 ~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~ 296 (686)
++-..++.|.|.|...... ..++..+...-..+.|+|||+++++++.||.|.++|+.+.+.+.++..
T Consensus 10 V~~~~~~~v~viD~~t~~~-------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------ 76 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKV-------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV------ 76 (369)
T ss_dssp EEEGGGTEEEEEETTT-SE-------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------
T ss_pred EEecCCCEEEEEECCCCeE-------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec------
Confidence 4566789999998765322 123433333334578999999999999999999999999886554432
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE-ECC
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA-SID 374 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~-s~D 374 (686)
......++++++| +++++ ..+
T Consensus 77 ---------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~~ 99 (369)
T PF02239_consen 77 ---------------------------------------------------------GGNPRGIAVSPDGKYVYVANYEP 99 (369)
T ss_dssp ---------------------------------------------------------SSEEEEEEE--TTTEEEEEEEET
T ss_pred ---------------------------------------------------------CCCcceEEEcCCCCEEEEEecCC
Confidence 2245789999999 66655 578
Q ss_pred CcEEEEECCCCeeeeEeeC--------CCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcE--EEEeccCCcEEEEE
Q 005646 375 KTVRLWRVGNDHCLRVFPH--------SNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHV--VDWVDIRQIVTAVC 443 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h--------~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~--~~~~~~~~~V~~v~ 443 (686)
+.+.++|..+.+.++.+.- ...+..|..+| ....++..-.| +.|.+.|...... ..............
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccc
Confidence 9999999999999988761 24678888888 66766665554 8888888876543 35556667788999
Q ss_pred EccCCCEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC---------CCeEEEEeCCCcEEE
Q 005646 444 YRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD---------SSKVMVSCADSQVRI 513 (686)
Q Consensus 444 ~spdg~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~---------~~~l~~~s~D~~I~i 513 (686)
|+|++++++++ ..++.|-++|..++++...... ....|..++..+ .+|.. +...+..-....+.+
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~----g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT----GKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred cCcccceeeecccccceeEEEeeccceEEEEeec----cccccccccccc-cCCCcceEEeeccccceecccccCCcccc
Confidence 99999988765 5577899999998877543221 223333444433 23311 122212222223333
Q ss_pred EeCCc--------------ceeEcCCCCEEEEE----eCCCcEEEEeCCCCC
Q 005646 514 LQGPN--------------VIGKYKDGKHIVSA----GEDSNVYMWNCIGHE 547 (686)
Q Consensus 514 wd~~~--------------~~~~~~dg~~l~sg----s~Dg~V~iWd~~~~~ 547 (686)
|+..+ .+..+|++++|... ...++|.|+|.++.+
T Consensus 254 ~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred chhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 43221 35678999999998 455899999998854
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.28 E-value=1.2e-11 Score=125.24 Aligned_cols=286 Identities=12% Similarity=0.109 Sum_probs=178.4
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.-..++.+|.+++.|+.-|.+-.+|+.+...... +. -...|.++.|-.+.+++|.+- ...+.|||-..-+.
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E-------i~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE-------IN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTEL 203 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeee-------ee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEE
Confidence 3356777899999999999999998876543211 11 124566777766666666663 35677777655442
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
...-.. .....+.|.+.+.-. +..+..+......+.. ++.+..+..-.+.+..|.-+|
T Consensus 204 HClk~~--~~v~rLeFLPyHfLL---~~~~~~G~L~Y~DVS~-----------------GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 204 HCLKRH--IRVARLEFLPYHFLL---VAASEAGFLKYQDVST-----------------GKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred eehhhc--Cchhhhcccchhhee---eecccCCceEEEeech-----------------hhhhHHHHccCCccchhhcCC
Confidence 211110 011112222222110 0111111111111110 134455555677888888899
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEE
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV 442 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v 442 (686)
-+ .+-+|...|+|.+|......++..+. |.++|.+|++.+ +|.|++|.+.|..|+|||+++...+.......+...+
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~l 340 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNL 340 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeecCCCcccc
Confidence 88 88899999999999999988876665 999999999999 9999999999999999999988766544446778889
Q ss_pred EEccCCCEEEEEecCCcEEEEeCC-CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG 521 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~ 521 (686)
++|..| +|| .+....|.||.-. .+...... ... ...-...|.++.|+| -...|-+|-..|-
T Consensus 341 s~Sqkg-lLA-~~~G~~v~iw~d~~~~s~~~~~--pYm--~H~~~~~V~~l~FcP-~EDvLGIGH~~G~----------- 402 (545)
T KOG1272|consen 341 SLSQKG-LLA-LSYGDHVQIWKDALKGSGHGET--PYM--NHRCGGPVEDLRFCP-YEDVLGIGHAGGI----------- 402 (545)
T ss_pred cccccc-cee-eecCCeeeeehhhhcCCCCCCc--chh--hhccCcccccceecc-HHHeeeccccCCc-----------
Confidence 998776 344 4455679999532 21101000 011 111234799999999 5566666655442
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCC
Q 005646 522 KYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 522 ~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
...|+=|+.+-+.--|..+
T Consensus 403 ----tsilVPGsGePN~Ds~e~n 421 (545)
T KOG1272|consen 403 ----TSILVPGSGEPNYDSLEDN 421 (545)
T ss_pred ----eeEeccCCCCCCcchhccC
Confidence 3456777777665555543
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=5.3e-10 Score=122.09 Aligned_cols=188 Identities=14% Similarity=0.171 Sum_probs=125.1
Q ss_pred eeecCCCccceeec---cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEE-EEeCCC--cEEEEEeec
Q 005646 208 RVRLNEEDAMFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDG--VVRLWQVVE 281 (686)
Q Consensus 208 ~~s~~~~~l~~g~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg--~I~vWd~~~ 281 (686)
.++++++.++..+. ...|.+|++..... +.+..+.+...+.+|+|||+.|+ +.+.+| .|.+||+.+
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~ 281 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQR--------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS 281 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCE--------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC
Confidence 46788888887663 34688898765432 12333444556889999999775 455555 588888876
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
++. ..+..|.......+
T Consensus 282 g~~---------------------------------------------------------------~~lt~~~~~~~~~~ 298 (433)
T PRK04922 282 RQL---------------------------------------------------------------TRLTNHFGIDTEPT 298 (433)
T ss_pred CCe---------------------------------------------------------------EECccCCCCccceE
Confidence 541 12223444456789
Q ss_pred eeCCC-EEEEEE-CCCc--EEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC---cEEEEecCCCcEEEEec
Q 005646 362 WSKNN-YLLSAS-IDKT--VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 362 ~s~~~-~L~s~s-~Dg~--V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg---~V~iwd~~~~~~~~~~~ 434 (686)
|+|+| .|+.++ .++. |.++|+.+++......+......++|+| ++++|+..+.++ .|.+||+.+++...+.
T Consensus 299 ~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt- 376 (433)
T PRK04922 299 WAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT- 376 (433)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCeEECC-
Confidence 99999 676655 3444 6666776766544333445566789999 999888766443 5999999888766443
Q ss_pred cCCcEEEEEEccCCCEEEEEecC---CcEEEEeCCCC
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDN 468 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~ 468 (686)
+........|+|||++++..+.+ +.+.++++...
T Consensus 377 ~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 377 PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 22344567999999988877653 35777787543
No 235
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=2.1e-10 Score=127.03 Aligned_cols=146 Identities=25% Similarity=0.401 Sum_probs=120.3
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
+.+.-++++|+.-+.|.+|......+. ..+.+|++.|..+.|+.||+|++|.|+|.++|+|++.+.+..
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn~p-------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~---- 210 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDNKP-------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL---- 210 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccCCc-------ceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc----
Confidence 344457889999999999987633222 247899999999999999999999999999999999887621
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~ 369 (686)
....-+|+..|..+.+.|+ .++
T Consensus 211 ---------------------------------------------------------~~~~fgHsaRvw~~~~~~n-~i~ 232 (967)
T KOG0974|consen 211 ---------------------------------------------------------GCTGFGHSARVWACCFLPN-RII 232 (967)
T ss_pred ---------------------------------------------------------CcccccccceeEEEEeccc-eeE
Confidence 1233479999999999998 999
Q ss_pred EEECCCcEEEEECCCCeeeeEee-C-CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 370 SASIDKTVRLWRVGNDHCLRVFP-H-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~~-h-~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
|++.|.+.++|+....+ +.++. | ...+..++..+ +....+|++.|+.+++||+..
T Consensus 233 t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeccceEEEEEecccce-ehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 99999999999765444 34555 4 46799999998 888999999999999999864
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=2.5e-09 Score=111.24 Aligned_cols=268 Identities=17% Similarity=0.199 Sum_probs=175.6
Q ss_pred ceeeecCCCcc-ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDA-MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l-~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
-..++++|+++ ++|..--.|++||+......+.... -...|.-.-.+.|-..++---.|.+|-+..-- | .
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------Dae~V~feiLsDD~SK~v~L~~DR~IefHak~-G-~ 126 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G-R 126 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------cccceeEEEeccchhhheEeecCceeeehhhc-C-e
Confidence 35667888864 6788889999999876544333211 12344444445554445555667777765421 1 1
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccccc---CCCeEEeccCCCCeeEEE
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL---EKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~h~~~V~~l~ 361 (686)
...+.++...- . +..-..+.+..+......++++. +..+..|....+.++++.
T Consensus 127 hy~~RIP~~GR---D---------------------m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 127 HYRTRIPKFGR---D---------------------MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS 182 (703)
T ss_pred eeeeecCcCCc---c---------------------ccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence 22222221100 0 00001111122222222333332 234555666778999999
Q ss_pred eeCCC-EEEEEECCCcEEEEECCCCeeeeEee-------CCC-----CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-------HSN-----YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-------h~~-----~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
.++-+ +|++|+.+|.|..||.++...+..+. |.+ .|+++.|+. ++-.+++|..+|.|.|||+++.+
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCC
Confidence 99977 88889999999999999887666654 333 399999997 79999999999999999999998
Q ss_pred EEEEeccC--CcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 429 VVDWVDIR--QIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 429 ~~~~~~~~--~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
.+...+|. -+|..+.|.+.+ +-.++......++|||-.+++.....+ +...++.+++-| ++.+++++
T Consensus 262 pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE---------pt~~lND~C~~p-~sGm~f~A 331 (703)
T KOG2321|consen 262 PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE---------PTSDLNDFCFVP-GSGMFFTA 331 (703)
T ss_pred ceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc---------ccCCcCceeeec-CCceEEEe
Confidence 88766664 578889997753 333444466789999998887654222 235599999999 88899999
Q ss_pred eCCCcEEEEeCC
Q 005646 506 CADSQVRILQGP 517 (686)
Q Consensus 506 s~D~~I~iwd~~ 517 (686)
-.++.+..|-.+
T Consensus 332 ne~~~m~~yyiP 343 (703)
T KOG2321|consen 332 NESSKMHTYYIP 343 (703)
T ss_pred cCCCcceeEEcc
Confidence 998888877644
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=3.8e-08 Score=104.05 Aligned_cols=258 Identities=15% Similarity=0.209 Sum_probs=167.1
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC----CCcEEEEEeecC-eeeeeeccCCCCCcc
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----DGVVRLWQVVED-ERLTEVDIPEIDPSC 297 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----Dg~I~vWd~~~~-~~~~~~~~~~~~~~~ 297 (686)
+.|.+|+++.....+..... + .-......|+++|++++|.++.+ ++.|..|.+... ..+..
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~---~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~---------- 78 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQT---V-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL---------- 78 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEE---E-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE----------
T ss_pred CcEEEEEEcCCCCCceEeee---e-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE----------
Confidence 78999988555444433221 1 13345667889999999999877 468888888764 11111
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE-CCC
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-IDK 375 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s-~Dg 375 (686)
+............++++|++ +|+++. .++
T Consensus 79 -------------------------------------------------~~~~~~~g~~p~~i~~~~~g~~l~vany~~g 109 (345)
T PF10282_consen 79 -------------------------------------------------LNSVPSGGSSPCHIAVDPDGRFLYVANYGGG 109 (345)
T ss_dssp -------------------------------------------------EEEEEESSSCEEEEEECTTSSEEEEEETTTT
T ss_pred -------------------------------------------------eeeeccCCCCcEEEEEecCCCEEEEEEccCC
Confidence 11111123345678899999 777766 589
Q ss_pred cEEEEECCC-Ceeee---EeeC-----------CCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCCCc--EEE----Ee
Q 005646 376 TVRLWRVGN-DHCLR---VFPH-----------SNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCH--VVD----WV 433 (686)
Q Consensus 376 ~V~iWd~~~-~~~~~---~~~h-----------~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~~~--~~~----~~ 433 (686)
+|.++++.. +.... .+.| .....++.|+| +++++++... ...|++|++.... +.. ..
T Consensus 110 ~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 110 SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 999999987 43322 2212 35678999999 8888877653 3579999997654 322 22
Q ss_pred ccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCC--CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE-eCCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADS 509 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~-s~D~ 509 (686)
........++|+|+|+++++.. .+++|.+|++. ++.+.....+...............+.++| ++++|.++ -..+
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~ 267 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSN 267 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTT
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCC
Confidence 4456689999999999886654 47889999988 554444333332222111223688999999 66665554 4678
Q ss_pred cEEEEeCC-------------------cceeEcCCCCEEEEEe-CCCcEEEEeCCC
Q 005646 510 QVRILQGP-------------------NVIGKYKDGKHIVSAG-EDSNVYMWNCIG 545 (686)
Q Consensus 510 ~I~iwd~~-------------------~~~~~~~dg~~l~sgs-~Dg~V~iWd~~~ 545 (686)
.|.+|++. ..+.++|+|++|+++. .++.|.+|+++.
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 89998862 1256788999999887 557899998854
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=2.9e-09 Score=116.49 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=117.7
Q ss_pred eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeecCeeeeeeccCCCCCcceEE
Q 005646 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIYF 300 (686)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~~~~~~~~~~~~~~~~~~~~ 300 (686)
.|.++|.+... .+.+..|...+...+|+|||++|+..+.+ ..|.+|++.+++...
T Consensus 180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-------------- 237 (430)
T PRK00178 180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-------------- 237 (430)
T ss_pred EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------
Confidence 46666655432 13455677889999999999999877644 358888887764211
Q ss_pred eecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EEECCC--c
Q 005646 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDK--T 376 (686)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~s~Dg--~ 376 (686)
+....+.+....|+|+| .|+ +.+.++ .
T Consensus 238 -------------------------------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 238 -------------------------------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred -------------------------------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 11122234468899999 555 555555 5
Q ss_pred EEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEE
Q 005646 377 VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~ 453 (686)
|.+||+.+++......+........|+| +++.|+..+. +| .|+++|+.+++...+...........|+|||+.++.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8888999887655444666677789999 8887766553 33 577788888776544332333456789999999988
Q ss_pred EecC-C--cEEEEeCCCCee
Q 005646 454 GSMM-G--DCRFYNVSDNHL 470 (686)
Q Consensus 454 gs~d-g--~i~iwd~~~~~~ 470 (686)
.+.+ + .|.+||+.++..
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEccCCceEEEEEECCCCCE
Confidence 7653 3 478889887654
No 239
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.22 E-value=1.3e-09 Score=104.70 Aligned_cols=235 Identities=17% Similarity=0.168 Sum_probs=150.1
Q ss_pred ccceEEEEEcCCccccccccccCceecccCCceEEEEEee---CCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCc
Q 005646 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP---DGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296 (686)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~ 296 (686)
..|++.+|++...... .+... ...-...+..|.|.. +|. .|+-+-.+|.|.++..........+..-..
T Consensus 44 R~Gkl~Lys~~d~~~~--~l~~~--q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--- 116 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLS--PLDTL--QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--- 116 (339)
T ss_pred eccceEEEeecccccC--cccee--eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch---
Confidence 4567888877643221 11111 112445688888875 455 567777889999998766554443332111
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECC
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID 374 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~D 374 (686)
...... ....+.++..+...+.....+... ....+... -+.++.+++|.-+.+...|+... .+.+|+.|
T Consensus 117 -~ki~~~---~~lslD~~~~~~~i~vs~s~G~~~---~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD 187 (339)
T KOG0280|consen 117 -KKISVV---EALSLDISTSGTKIFVSDSRGSIS---GVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD 187 (339)
T ss_pred -hhhhhe---eeeEEEeeccCceEEEEcCCCcEE---EEecceee--eeecccccccceeeeeeecccCCCceEEecCCC
Confidence 000000 112233333333333333222221 11111111 13456788999999999998765 89999999
Q ss_pred CcEEEEECC-CCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC-CCcEEEEeccCCcEEEEEEccCCC-
Q 005646 375 KTVRLWRVG-NDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDWVDIRQIVTAVCYRPDGQ- 449 (686)
Q Consensus 375 g~V~iWd~~-~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~~~~V~~v~~spdg~- 449 (686)
+.+.-||++ .++++..-. |...|.+|.-+|..+.+++||+.|-.|++||.+ -++.+......+.|..++.+|--.
T Consensus 188 ~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 188 GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFH 267 (339)
T ss_pred ceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhh
Confidence 999999999 455555533 999999999999889999999999999999999 466666666779999999999432
Q ss_pred EEEEEecCCcEEEEeCCCCeee
Q 005646 450 GGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 450 ~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
.++.++.-+-.+|-+.+.+...
T Consensus 268 ~lL~~CMh~G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 268 RLLAACMHNGAKILDSSDKVLE 289 (339)
T ss_pred HHHHHHHhcCceEEEecccccc
Confidence 3333344445788888776654
No 240
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3.4e-09 Score=104.55 Aligned_cols=245 Identities=13% Similarity=0.169 Sum_probs=150.1
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCcccccc-----ccccCcee--cccCCceEEEEEeeCCCEEEEEeC-CCcEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELS-----ALYKGQEI--QAHDGSILTMKFSPDGQYLASAGD-DGVVRL 276 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~-----~~~~~~~l--~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~v 276 (686)
.+.++++.+...++.+--+-|.+|.......... .....+.+ .+| .+|++|.|.+||..|++++. |..|+|
T Consensus 144 tclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~i 222 (445)
T KOG2139|consen 144 TCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMI 222 (445)
T ss_pred eEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEE
Confidence 3456666665444444455589998754221111 11122223 355 79999999999999999986 578999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.++..+. +. .--.+.
T Consensus 223 Wdpdtg~~~p------------------------------------------------------------L~--~~glgg 240 (445)
T KOG2139|consen 223 WDPDTGQKIP------------------------------------------------------------LI--PKGLGG 240 (445)
T ss_pred EcCCCCCccc------------------------------------------------------------cc--ccCCCc
Confidence 9999887322 11 113467
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCC-CeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC-------
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC------- 427 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~-~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~------- 427 (686)
+.-|.|||++ +|+.+.-|+..++|+... -.+.+-.-..+.|...+|+| +|.+|+-... |.-++|.+.-.
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFL 318 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCCcccc
Confidence 8899999999 999999999999996543 33333333566999999999 7766554442 33455554210
Q ss_pred ------cEEEEe--------c----cCCcEEEEEEccCCCEEEEEecCCc--------EEEEeCCCCeeeeeeeEEeecc
Q 005646 428 ------HVVDWV--------D----IRQIVTAVCYRPDGQGGIVGSMMGD--------CRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 428 ------~~~~~~--------~----~~~~V~~v~~spdg~~l~~gs~dg~--------i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
+..-.. . .-+.+.+++|.|.|.++|+....+. |.+||.+..... +...-+.
T Consensus 319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v---els~cg~ 395 (445)
T KOG2139|consen 319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV---ELSYCGM 395 (445)
T ss_pred CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce---EEEeccc
Confidence 000000 0 1356889999999999999755433 666776533221 1111122
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
..+..-...++.++..++.+|.++=..|.|.-|+..
T Consensus 396 i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 396 IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 222222233444444456677777778888877653
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1e-09 Score=119.39 Aligned_cols=189 Identities=19% Similarity=0.204 Sum_probs=123.6
Q ss_pred eeeecCCCccceeecc---ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEE-EEeCCCcEEEEEeecC
Q 005646 207 ERVRLNEEDAMFCSKV---QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDGVVRLWQVVED 282 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d---~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~vWd~~~~ 282 (686)
.+++++++.++..+.. ..|.+|++..... ..+....+.+.+.+|+|||+.|+ +.+.++...||.+...
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--------RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--------EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 3577888888876643 3588888765432 11223345567899999999886 5677888888876431
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
. .....+..|...+....|
T Consensus 273 ~-------------------------------------------------------------~~~~~lt~~~~~~~~~~w 291 (427)
T PRK02889 273 G-------------------------------------------------------------SGLRRLTQSSGIDTEPFF 291 (427)
T ss_pred C-------------------------------------------------------------CCcEECCCCCCCCcCeEE
Confidence 1 011223334445567789
Q ss_pred eCCC-EEEEEEC-CCcEEEEEC--CCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC---cEEEEecCCCcEEEEecc
Q 005646 363 SKNN-YLLSASI-DKTVRLWRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 363 s~~~-~L~s~s~-Dg~V~iWd~--~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg---~V~iwd~~~~~~~~~~~~ 435 (686)
+|+| .|+..+. ++...||.+ .++.......+.......+|+| ++++|+..+.++ .|.+||+.+++...+...
T Consensus 292 SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~ 370 (427)
T PRK02889 292 SPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVTALTDT 370 (427)
T ss_pred cCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeEEccCC
Confidence 9999 6665553 566677755 4444333322344455789999 999988777654 599999998876654432
Q ss_pred CCcEEEEEEccCCCEEEEEecCC---cEEEEeCC
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMG---DCRFYNVS 466 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg---~i~iwd~~ 466 (686)
.......|+|||+.|+.++.++ .+++.++.
T Consensus 371 -~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 371 -TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred -CCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 3346789999999988877644 25555553
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.2e-09 Score=119.57 Aligned_cols=191 Identities=11% Similarity=0.099 Sum_probs=129.0
Q ss_pred eeeecCCCccceeec---cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEE-EEeCCCc--EEEEEee
Q 005646 207 ERVRLNEEDAMFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDGV--VRLWQVV 280 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~--I~vWd~~ 280 (686)
.+++++++.++..+. +..|.+|++..... +.+..+.+.+...+|+|||+.|+ +.+.++. |.+||+.
T Consensus 207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred eEECCCCCEEEEEEecCCCCEEEEEECCCCcE--------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 456788888887653 46899998865432 23445667788999999998775 5566665 5555665
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
++.. ..+..+.......
T Consensus 279 ~~~~---------------------------------------------------------------~~Lt~~~~~~~~~ 295 (435)
T PRK05137 279 SGTT---------------------------------------------------------------TRLTDSPAIDTSP 295 (435)
T ss_pred CCce---------------------------------------------------------------EEccCCCCccCce
Confidence 5431 2223344456678
Q ss_pred EeeCCC-EEEEEEC-CC--cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCCCcEEEEe
Q 005646 361 SWSKNN-YLLSASI-DK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 361 ~~s~~~-~L~s~s~-Dg--~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~~~~~~~~ 433 (686)
.|+|+| .|+..+. ++ .|.+||+..+.......+...+....|+| ++++|+..+.+ ..|.+||+.++....+.
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGERILT 374 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 999999 6666553 33 68888887766554444566677889999 89988877654 35888898665543332
Q ss_pred ccCCcEEEEEEccCCCEEEEEecC------CcEEEEeCCCCee
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMM------GDCRFYNVSDNHL 470 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~d------g~i~iwd~~~~~~ 470 (686)
....+....|+|||+.|+..+.+ ..++++|+.+...
T Consensus 375 -~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 375 -SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 23356788999999998876543 2578888866543
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.21 E-value=2.8e-09 Score=112.71 Aligned_cols=263 Identities=13% Similarity=0.106 Sum_probs=146.5
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~vWd~~~~~~~ 285 (686)
..+++++.++.+++.|+.|.++|+..... ..+++.. ..-.++++|+||+|++++. .++.+.|+|..+.+.+
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-------v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKV-------VATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSE-------EEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccE-------EEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 35788899999999999999999876542 2233333 3467899999999999876 5799999999999988
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
..+......... ....+..+...+.....+..+........+-+... ..+............+..|.|+
T Consensus 114 ~~I~~~~~~~~~------~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-----~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 114 KTIPTGGMPVDG------PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-----KNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp EEEE--EE-TTT------S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-----SCEEEEEEE--TTEEEEEE-TT
T ss_pred eecccccccccc------cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-----cccceeeecccccccccccCcc
Confidence 877654322211 11122233333333333333333332222222111 0111122223456678999999
Q ss_pred C-EE-EEEECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeec---------CCCEEEEEEcCCcEEEEecCCCcE
Q 005646 366 N-YL-LSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPV---------DDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 366 ~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~---------~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
+ ++ ++...+..|-++|..+++.+..+. |...+..+ .+|. .+...++.-....+.+||..+.++
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 9 54 445667899999999998877653 44444433 2221 222222333334667789999998
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEE----ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVG----SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~g----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+..+...+.-..+..+|+++++.+. ...++|.++|..+.+..... ......++..+.|++
T Consensus 262 v~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i-------~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 262 VKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI-------TPGPGKRVVHMEFNP 325 (369)
T ss_dssp EEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H-------HHHHT--EEEEEE-T
T ss_pred EEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE-------eccCCCcEeccEECC
Confidence 8777766655888999999999998 44588999999887543211 111223488899999
No 244
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=8.4e-10 Score=108.14 Aligned_cols=248 Identities=11% Similarity=0.190 Sum_probs=163.8
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe-ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV-VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
+.+.||...|++...-|-..-+++.+.|.++|||-- +.++....+.... +..| ....+..+...++.
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~-----------~~~~y~~e~~~L~v 85 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPC-----------SAMEYVSESRRLYV 85 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCc-----------eEeeeeccceEEEE
Confidence 457889999999988887778999999999999953 3444333332211 1111 12222222222222
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
.+.........+ .. .|. ....++....|...|..+.|+-.. .+++.+.|+.+.---.+.+..+..+.....-+++.
T Consensus 86 g~~ngtvtefs~-se-dfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 86 GQDNGTVTEFAL-SE-DFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred EEecceEEEEEh-hh-hhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 222221111110 00 010 113455667899999999998777 99999999888765566666665555444455555
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCC---CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLS---CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~---~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
|.- . +...|-..|.|.+-.+.. +.+..+.+|...+++++|.|..+.+.+|..|..+.+||+-.++....
T Consensus 163 ~d~-~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~----- 234 (404)
T KOG1409|consen 163 FDA-L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY----- 234 (404)
T ss_pred eee-E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee-----
Confidence 543 2 566666667766654432 33446778999999999999999999999999999999976654321
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
...+|...|..++..+ --..+++++.||.|-+|+..
T Consensus 235 --el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 235 --ELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred --eeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence 1345667788888877 67889999999999999864
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=2.7e-10 Score=126.13 Aligned_cols=189 Identities=22% Similarity=0.349 Sum_probs=147.2
Q ss_pred eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCC----ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG----SILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~----~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.+......++.+..++.+.+|+......-. .++.-.. ...-+-++++.-|+++|+.-+.|.+|+.....
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~-------~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRDSKNSSVLS-------KIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred chhhhcceEEEEEcCceEEEEecccCceeh-------hcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 444556678889999999999976543211 1111111 12223346667799999999999999986221
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
++. .+.||.+.|..+.|+
T Consensus 167 -------------------------------------------------------------~p~-~l~GHeG~iF~i~~s 184 (967)
T KOG0974|consen 167 -------------------------------------------------------------KPI-RLKGHEGSIFSIVTS 184 (967)
T ss_pred -------------------------------------------------------------Ccc-eecccCCceEEEEEc
Confidence 122 567999999999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeee--EeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc-CCcE
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIV 439 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~--~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~V 439 (686)
.+| ++++.|+|.++|+|++++.+... .|.|...|+.+.|.| + .++|++.|.+.++|+....+...+..| ...+
T Consensus 185 ~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~i 261 (967)
T KOG0974|consen 185 LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGI 261 (967)
T ss_pred cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEecccceehhhhhhhhcce
Confidence 999 99999999999999999988765 567999999999998 4 999999999999997766555444444 3568
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
..+++.++...+++++.||.+++||+...
T Consensus 262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 262 WKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999999999999999999998654
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=5.2e-09 Score=114.35 Aligned_cols=175 Identities=17% Similarity=0.167 Sum_probs=113.7
Q ss_pred eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC-C--cEEEEEeecCeeeeeeccCCCCCcceEE
Q 005646 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD-G--VVRLWQVVEDERLTEVDIPEIDPSCIYF 300 (686)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g--~I~vWd~~~~~~~~~~~~~~~~~~~~~~ 300 (686)
.+.++|.+.... +.+..+...+.+..|+|||++|+..+.+ + .|.+||+.+++...
T Consensus 199 ~l~i~d~dG~~~--------~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-------------- 256 (448)
T PRK04792 199 QLMIADYDGYNE--------QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-------------- 256 (448)
T ss_pred EEEEEeCCCCCc--------eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------
Confidence 566666544322 2344567789999999999998876543 3 57777876654211
Q ss_pred eecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EEECCCc--
Q 005646 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKT-- 376 (686)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~s~Dg~-- 376 (686)
+..+. +.....+|+|+| .|+ +.+.++.
T Consensus 257 ----------------------------------------------lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 257 ----------------------------------------------VTSFP---GINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred ----------------------------------------------ecCCC---CCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 11111 223467999999 554 5566675
Q ss_pred EEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEE
Q 005646 377 VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~ 453 (686)
|.+||+.+++......+.......+|+| +++.|+..+. ++ .|.++|+.+++..............+|+|||++++.
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence 7777888877655444666678899999 8887766553 34 466678877776544323333445789999999888
Q ss_pred EecC-C--cEEEEeCCCCee
Q 005646 454 GSMM-G--DCRFYNVSDNHL 470 (686)
Q Consensus 454 gs~d-g--~i~iwd~~~~~~ 470 (686)
.+.+ + .|.++|+.++..
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred EEecCCceEEEEEECCCCCe
Confidence 6553 3 355667766653
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.15 E-value=2e-08 Score=103.41 Aligned_cols=298 Identities=14% Similarity=0.190 Sum_probs=189.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCC--------------
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG-------------- 272 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-------------- 272 (686)
.++++.|.+++.... ..|.+|......+ +. .+ -...|..+.|+|.++||.|-+...
T Consensus 38 ~~~SP~G~~l~~~~~-~~V~~~~g~~~~~-l~------~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 38 VSESPLGTYLFSEHA-AGVECWGGPSKAK-LV------RF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred eeecCcchheehhhc-cceEEccccchhh-ee------ee--ecCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 467778887776554 4588896543321 11 11 224699999999999999976543
Q ss_pred -cEEEEEeecCeeeeeeccCCCC--Cc-ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeE
Q 005646 273 -VVRLWQVVEDERLTEVDIPEID--PS-CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLH 348 (686)
Q Consensus 273 -~I~vWd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (686)
.+.+||+.++..+..+...... .. .+.|+.++.-... . ....+.++.. .-.+...+.+
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR-------------v----v~~sl~i~e~-t~n~~~~p~~ 169 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVAR-------------V----VGSSLYIHEI-TDNIEEHPFK 169 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhh-------------h----ccCeEEEEec-CCccccCchh
Confidence 4999999999988887766554 22 2222222211000 0 0011111111 1111122333
Q ss_pred EeccCCCCeeEEEeeCCC---EEEE-----EECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEE-----
Q 005646 349 EFHGHSGEILDLSWSKNN---YLLS-----ASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS----- 414 (686)
Q Consensus 349 ~l~~h~~~V~~l~~s~~~---~L~s-----~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs----- 414 (686)
.++ ...|.+.+|+|.+ .|+. ...++++++|.+..+..+.+-. ....=..+.|++ .+++|+.--
T Consensus 170 ~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~k 246 (561)
T COG5354 170 NLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTK 246 (561)
T ss_pred hcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeee
Confidence 333 3568888999974 4442 4678899999999777665544 222223567777 666654321
Q ss_pred ------cCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEE--EecCCcEEEEeCCCCeeeeeeeEEeeccccCCC
Q 005646 415 ------IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (686)
Q Consensus 415 ------~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 486 (686)
....++|++++...+....+..++|...+|.|.++.+++ |.+.-.+.++|++.+ +... .+.
T Consensus 247 snKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~----------~Pe 315 (561)
T COG5354 247 SNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY----------FPE 315 (561)
T ss_pred cccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe----------cCC
Confidence 135688999986665544477899999999998887766 457888999999876 3321 122
Q ss_pred CCeEEEEEeCCCCCeEEEEeCC---CcEEEEeCCc--------------ceeEcCCCCEEEEEe------CCCcEEEEeC
Q 005646 487 KRITGFQFLPQDSSKVMVSCAD---SQVRILQGPN--------------VIGKYKDGKHIVSAG------EDSNVYMWNC 543 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D---~~I~iwd~~~--------------~~~~~~dg~~l~sgs------~Dg~V~iWd~ 543 (686)
.+=+.+.|+| ...++++++-| |.|-+||... ...|+||++++.+.. .|..|.||++
T Consensus 316 ~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 316 QKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cccccccccC-cccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 3345678999 67777776655 6788998542 245889999998874 4889999999
Q ss_pred CCCC
Q 005646 544 IGHE 547 (686)
Q Consensus 544 ~~~~ 547 (686)
....
T Consensus 395 ~g~~ 398 (561)
T COG5354 395 YGAK 398 (561)
T ss_pred cCch
Confidence 8754
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=3.3e-09 Score=111.24 Aligned_cols=201 Identities=16% Similarity=0.243 Sum_probs=145.7
Q ss_pred eCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC-CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCc
Q 005646 260 PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI-DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338 (686)
Q Consensus 260 pdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (686)
|.+.|+|....||.+|||+...++...++..... ...|++. .|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~---------------------------------~w~-- 47 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYT---------------------------------KWG-- 47 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeE---------------------------------EEE--
Confidence 4567999999999999999999887666642211 1111111 111
Q ss_pred cccccCCCeEEeccCCCCeeEEEe----eCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEE
Q 005646 339 VFRILEKPLHEFHGHSGEILDLSW----SKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 339 ~~~~~~~~~~~l~~h~~~V~~l~~----s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l 410 (686)
... ........++.+ +.+. .|+-|...|.|.+|++..++....+. |.+.|+++.++. +-..|
T Consensus 48 -L~~--------~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ci 117 (541)
T KOG4547|consen 48 -LSA--------DYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCI 117 (541)
T ss_pred -EEe--------ccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCce
Confidence 000 000011122222 2233 78888899999999999999988886 999999999998 88899
Q ss_pred EEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 411 ISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
.+++.|+.+..|+...++.+ .+...+..+.+++++|||..+++++ +.|++||+++.+... ...+|.++|
T Consensus 118 yS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~--------~ftgh~s~v 187 (541)
T KOG4547|consen 118 YSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVI--------TFTGHGSPV 187 (541)
T ss_pred EecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEE--------EecCCCcce
Confidence 99999999999999999887 4555677799999999999999886 789999999987654 356788999
Q ss_pred EEEEEeCC----CCCeEE-EEeCCCcEEEEe
Q 005646 490 TGFQFLPQ----DSSKVM-VSCADSQVRILQ 515 (686)
Q Consensus 490 ~~l~fsp~----~~~~l~-~~s~D~~I~iwd 515 (686)
.+++|.-. .+.+++ +...+.-|.+|-
T Consensus 188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEEEEEEeccccccceeeeccccccceeEEE
Confidence 99999873 133443 344556666774
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=1.4e-09 Score=106.48 Aligned_cols=222 Identities=21% Similarity=0.326 Sum_probs=140.1
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
..-|.++.|...|.+||||..+|.|.++.-..... .++... .....+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~-------t~fqshep----------------------- 73 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEYNFQ-------TEFQSHEP----------------------- 73 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc-cceeee-------eeeeccCc-----------------------
Confidence 45689999999999999999999999996443221 011100 00000000
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC---EEEEEECCCcEEEEECCCCe--------------------
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDH-------------------- 386 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~-------------------- 386 (686)
.|+ .+..+ .-...|..+.|.+++ .++..+.|++|++|.+....
T Consensus 74 ---------EFD----YLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~l 139 (433)
T KOG1354|consen 74 ---------EFD----YLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSL 139 (433)
T ss_pred ---------ccc----hhhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCcccee
Confidence 000 00001 123468889999876 78888899999999885321
Q ss_pred ---------------eeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC----cEEEEec-----cCCcEE
Q 005646 387 ---------------CLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVVDWVD-----IRQIVT 440 (686)
Q Consensus 387 ---------------~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~----~~~~~~~-----~~~~V~ 440 (686)
|.+.+. |.--|++|.++. |...++++. |=.|.+|.+.-. .++.... ...-|+
T Consensus 140 r~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVIT 217 (433)
T KOG1354|consen 140 RLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVIT 217 (433)
T ss_pred eceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHh
Confidence 222223 778899999998 888777754 788999988632 2333333 345699
Q ss_pred EEEEccC-CCEEEEEecCCcEEEEeCCCCeeeee-----eeEE-e--eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 441 AVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELD-----AEIC-V--HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 441 ~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~-----~~~~-~--~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
+..|+|. .+.++-.+..|+|++-|++...+-.. .+.. . +.....-...|..+.|++
T Consensus 218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~--------------- 282 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH--------------- 282 (433)
T ss_pred hhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc---------------
Confidence 9999994 45777788999999999985433210 0000 0 000011123466677776
Q ss_pred EEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 512 RILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 512 ~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|+||++-.. -+|+|||++-..
T Consensus 283 -------------sGryilsRDy-ltvk~wD~nme~ 304 (433)
T KOG1354|consen 283 -------------SGRYILSRDY-LTVKLWDLNMEA 304 (433)
T ss_pred -------------CCcEEEEecc-ceeEEEeccccC
Confidence 8999997543 589999996544
No 250
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=5.1e-10 Score=115.26 Aligned_cols=232 Identities=18% Similarity=0.256 Sum_probs=160.0
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
+.+.+++++.|.+|++|.++....+..+....-++++|+.+|.++.|-.+-++++++ ||-|++||.--+..+..+.-.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC
Confidence 456789999999999999988776666666666889999999999999999998875 789999998666543322100
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS 370 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s 370 (686)
+ -.+..+.|.++.--... .++.
T Consensus 824 ------------------------------------------------------p---k~~a~~~ikcl~nv~~~iliAg 846 (1034)
T KOG4190|consen 824 ------------------------------------------------------P---KEGAGGNIKCLENVDRHILIAG 846 (1034)
T ss_pred ------------------------------------------------------c---ccCCCceeEecccCcchheeee
Confidence 0 01223344444321122 4445
Q ss_pred EECCCcEEEEECCCCeeeeEee------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEE
Q 005646 371 ASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVC 443 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~ 443 (686)
++...+|+++|.+.......+. .+..+.|++..| .++.++.+-.+|+|.+.|.++++++ .|.........++
T Consensus 847 csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla 925 (1034)
T KOG4190|consen 847 CSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA 925 (1034)
T ss_pred ccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc
Confidence 5789999999999887665554 346789999999 9999999999999999999999977 5665555554444
Q ss_pred EccCCCEEEEEecCCcEEE-EeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 444 YRPDGQGGIVGSMMGDCRF-YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
.|..+.++....|.++.+ |...++...+... .+ ..-..|...-+.-+++....+.+.+|-
T Consensus 926 -apsdq~L~~saldHslaVnWhaldgimh~q~k--------pp---pepahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 926 -APSDQALAQSALDHSLAVNWHALDGIMHLQDK--------PP---PEPAHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred -CchhHHHHhhcccceeEeeehhcCCeeeeccC--------CC---CcchhhhhccCceeEEeccCcEEEEEe
Confidence 356667777778888888 8766554322111 00 011122222344566666666777774
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.09 E-value=3.2e-09 Score=104.16 Aligned_cols=194 Identities=17% Similarity=0.285 Sum_probs=134.3
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+..+......|+.|-..|.+.-+.+.. ++.++...+.+..|...|..+-|+....++++.+.|..+.---.+.+..
T Consensus 72 ~~~~y~~e~~~L~vg~~ngtvtefs~se---dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~ 148 (404)
T KOG1409|consen 72 SAMEYVSESRRLYVGQDNGTVTEFALSE---DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR 148 (404)
T ss_pred eEeeeeccceEEEEEEecceEEEEEhhh---hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc
Confidence 3444455556788898999998887643 3444445566778999999999999999999999998876544555554
Q ss_pred eeeeccCCC--CCcc---eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 285 LTEVDIPEI--DPSC---IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 285 ~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
+..+..... +..+ ..|...+.+.+..+. ++...-.++..+.+|.+.+.+
T Consensus 149 lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr--------------------------~~~~~~~~i~~~~~h~~~~~~ 202 (404)
T KOG1409|consen 149 LGGYNFETPASALQFDALYAFVGDHSGQITMLK--------------------------LEQNGCQLITTFNGHTGEVTC 202 (404)
T ss_pred ccceEeeccCCCCceeeEEEEecccccceEEEE--------------------------EeecCCceEEEEcCcccceEE
Confidence 333221111 0000 011111111111111 111112567889999999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCe--eeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDH--CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
++|.+.. .|++|..|..|.+||+.-.+ ....+.|.+.|..++..+ .-..+++++.||.|-+|++...+
T Consensus 203 l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 203 LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecccee
Confidence 9999987 99999999999999997554 344455999999999888 78899999999999999997643
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=2.8e-09 Score=113.03 Aligned_cols=240 Identities=17% Similarity=0.254 Sum_probs=170.6
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
......|+.|+....|||.||.||.++|-.+.+...-........ ...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa--------------~sn------------------ 60 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAA--------------ASN------------------ 60 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccc--------------ccc------------------
Confidence 345688999999999999999999999998876541111100000 000
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEee
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNP 404 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp 404 (686)
-..-+++.||.+.|.-+.|+.+. .|-|+..+|.|.+|-+-.+....... ..+.|.+++|+.
T Consensus 61 ---------------LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~ 125 (1189)
T KOG2041|consen 61 ---------------LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL 125 (1189)
T ss_pred ---------------cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC
Confidence 01346789999999999999888 88899999999999998887654433 567899999998
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe---eeeeeeEEeecc
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH---LELDAEICVHSK 481 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~---~~~~~~~~~~~~ 481 (686)
+|..+.....||.|.+=.+...++....-.......+.|++|.+.++.+-.+|.+++||...+- +.....+...+.
T Consensus 126 -dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~ 204 (1189)
T KOG2041|consen 126 -DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI 204 (1189)
T ss_pred -CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeee
Confidence 9999999999998887777665543211122334578999999999999999999999987542 222222222222
Q ss_pred ccCCCCCeEEEEEe-------CCCCCeEEEEeCCCcEEEEeCC--------------cceeEcCCCCEEEEEeCCC
Q 005646 482 KKAPCKRITGFQFL-------PQDSSKVMVSCADSQVRILQGP--------------NVIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 482 ~~~~~~~I~~l~fs-------p~~~~~l~~~s~D~~I~iwd~~--------------~~~~~~~dg~~l~sgs~Dg 536 (686)
......+|..+.|. |.+...++++..+|.++|.... ....|.++|..|+.++.|.
T Consensus 205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcc
Confidence 22233346666654 3367789999999998887422 2357889999999998753
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.02 E-value=3.1e-08 Score=108.03 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=111.4
Q ss_pred eccCCCCeeEEEeeCCC-EEEEEECC---CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEE-EEEcCC--cEEEE
Q 005646 350 FHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDG--KVRIW 422 (686)
Q Consensus 350 l~~h~~~V~~l~~s~~~-~L~s~s~D---g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~-sgs~Dg--~V~iw 422 (686)
+..+...+...+|+|+| +|+.++.+ ..|++||+.+++......+...+.+++|+| +++.|+ +.+.++ .|++|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccEEEE
Confidence 33456678889999999 77766543 479999999887655555667778899999 887665 444444 58999
Q ss_pred ecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec-CC--cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 423 d~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
|+.++....+..+........|+|||+.|+..+. .+ .|+++|+.+++... +. .+...+....|+|
T Consensus 264 d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~---l~------~~~~~~~~~~~sp--- 331 (417)
T TIGR02800 264 DLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR---LT------FRGGYNASPSWSP--- 331 (417)
T ss_pred ECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---ee------cCCCCccCeEECC---
Confidence 9998877666665555667899999998877654 33 57777876654321 11 1123345566777
Q ss_pred CeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCC---cEEEEeCCCCC
Q 005646 500 SKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDS---NVYMWNCIGHE 547 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg---~V~iWd~~~~~ 547 (686)
+|++|+.++.++ .|++||+.++.
T Consensus 332 -------------------------dg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 332 -------------------------DGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred -------------------------CCCEEEEEEccCCceEEEEEeCCCCC
Confidence 777777777665 78888887643
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=9e-08 Score=103.87 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=94.6
Q ss_pred CeeEEEeeCCC-EEEEEEC-----CCcEEEEECCCC---eeeeEeeC-CCCeEEEEEeecCCCEEEEEE-cCCcEEEE--
Q 005646 356 EILDLSWSKNN-YLLSASI-----DKTVRLWRVGND---HCLRVFPH-SNYVTCVHFNPVDDNYFISGS-IDGKVRIW-- 422 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~-----Dg~V~iWd~~~~---~~~~~~~h-~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iw-- 422 (686)
.....+|+||| .|+..+. +-.+.+|++..+ ........ .......+|+| |++.|+..+ .+|...||
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence 34567999999 6665442 334555777653 33333332 23456789999 888777665 46755555
Q ss_pred ecCC--CcEEEEeccCCcEEEEEEccCCCEEEEEecC---CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 423 AVLS--CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 423 d~~~--~~~~~~~~~~~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
++.. +....+......+....|+|||+.|+..+.+ ..|++||+.+++..... .....+....|+|
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---------~~~~~~~~p~wSp- 380 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT---------TSPENKESPSWAI- 380 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc---------CCCCCccceEECC-
Confidence 4432 3333344444567789999999998876553 36999999887653211 0112355677777
Q ss_pred CCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeC---CCcEEEEeCCCCC
Q 005646 498 DSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGE---DSNVYMWNCIGHE 547 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~---Dg~V~iWd~~~~~ 547 (686)
||++|+..+. ...|++|++.+++
T Consensus 381 ---------------------------DG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 381 ---------------------------DSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred ---------------------------CCCEEEEEECCCCCceEEEEECCCCC
Confidence 6665553322 3568888887754
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=7.7e-07 Score=88.84 Aligned_cols=260 Identities=14% Similarity=0.231 Sum_probs=172.6
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---CcEEEEEeec--CeeeeeeccCCCCCc
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVE--DERLTEVDIPEIDPS 296 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~vWd~~~--~~~~~~~~~~~~~~~ 296 (686)
++-|.+|++.+...++... .+-.+.+.++-|+|+|++++|.++..+ |.|..|.+.. |+. ..+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln------- 82 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLN------- 82 (346)
T ss_pred CCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEee-------
Confidence 5679999998665554432 344678899999999999999998665 6666666654 221 0000
Q ss_pred ceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC-C
Q 005646 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-D 374 (686)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-D 374 (686)
...+.++ +-..+++++++ +|+++.. -
T Consensus 83 --------------------------------------------------~~~~~g~--~p~yvsvd~~g~~vf~AnY~~ 110 (346)
T COG2706 83 --------------------------------------------------RQTLPGS--PPCYVSVDEDGRFVFVANYHS 110 (346)
T ss_pred --------------------------------------------------ccccCCC--CCeEEEECCCCCEEEEEEccC
Confidence 0111122 22778899999 7777764 5
Q ss_pred CcEEEEECCC-Cee---eeEeeCCCC----------eEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEE----Eecc
Q 005646 375 KTVRLWRVGN-DHC---LRVFPHSNY----------VTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVD----WVDI 435 (686)
Q Consensus 375 g~V~iWd~~~-~~~---~~~~~h~~~----------V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~----~~~~ 435 (686)
|.|.++-++. |.. +..+.|.+. +.+..|.| ++++|++.... -+|.+|++..+.+.. ....
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 8999999976 332 344447666 89999999 99999887642 469999999876542 2244
Q ss_pred CCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCC--eeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe-CCCcE
Q 005646 436 RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDN--HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQV 511 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D~~I 511 (686)
......|.|+|++++..+.+. +++|.+|..... ++.....+......-........+..+| ++++|.+.- ....|
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg~dsI 268 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRGHDSI 268 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecCCCCeE
Confidence 566889999999999877655 899999998874 3221111111111122335567788888 666665543 23455
Q ss_pred EEEeCC-------------------cceeEcCCCCEEEEEeCC-CcEEEEeCCCCC
Q 005646 512 RILQGP-------------------NVIGKYKDGKHIVSAGED-SNVYMWNCIGHE 547 (686)
Q Consensus 512 ~iwd~~-------------------~~~~~~~dg~~l~sgs~D-g~V~iWd~~~~~ 547 (686)
-++.+. ....+.+.|++|+++.+| .+|.+|.++...
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 555422 124566799999999866 469999887644
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.00 E-value=1.3e-06 Score=90.48 Aligned_cols=256 Identities=11% Similarity=0.082 Sum_probs=156.7
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC----------CCcEEEEEeecCeeeeeeccCC
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----------DGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----------Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
++|.|.|..+... . ..+..-..+- .+ ++|||+.|+.+.. +..|.+||+.+.+.+.++..+.
T Consensus 27 ~~v~ViD~~~~~v--~-----g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRV--L-----GMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEE--E-----EEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 7899998765321 1 1122222222 24 9999998887765 7899999999999888777543
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~ 371 (686)
.+. . . ....-..++++|+| +|+..
T Consensus 98 ~p~----------------------------------------------------~--~-~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 98 GPR----------------------------------------------------F--L-VGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred Cch----------------------------------------------------h--h-ccCccceEEECCCCCEEEEe
Confidence 210 0 0 11233467889999 66655
Q ss_pred E-C-CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-CcEE----EEecc-CCcE-EEE
Q 005646 372 S-I-DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVV----DWVDI-RQIV-TAV 442 (686)
Q Consensus 372 s-~-Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~~----~~~~~-~~~V-~~v 442 (686)
. . +..|-+.|+.+++.+..+.-.+...-...++ .-+..-+.||......+.+ ++.. ..+.. ..++ ..-
T Consensus 123 n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 123 QFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred cCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 5 3 7899999999999999887544333333322 2222334566655544432 1111 11111 0000 000
Q ss_pred EEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc----cCCCCCeEEEEEeCCCCCeEEEEe----------C
Q 005646 443 CYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK----KAPCKRITGFQFLPQDSSKVMVSC----------A 507 (686)
Q Consensus 443 ~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~I~~l~fsp~~~~~l~~~s----------~ 507 (686)
.|.+ +|+++.+... |+|.+.|+..........+...... .-....+..++++| +++.+++.. .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCC
Confidence 4456 8888888766 9999999876554433333222111 11233455599999 566665532 2
Q ss_pred CCcEEEEeCCc--------------ceeEcCCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005646 508 DSQVRILQGPN--------------VIGKYKDGK-HIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 508 D~~I~iwd~~~--------------~~~~~~dg~-~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
.+.|.++|..+ .+++++|++ +|++.. .++.|.|.|..+++
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 25799999654 378999999 888776 57889999998876
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=8.3e-08 Score=102.18 Aligned_cols=313 Identities=15% Similarity=0.160 Sum_probs=197.4
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCcccc--------ccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKE--------LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~--------~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
.+..+.....++++|+.||.++|-.+.....+ .+.+.+.|++.||++.|.-+.|+.+.+.|-|...+|.|.|
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 34556677789999999999999998765432 2345677899999999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|-+-.+.-..++-..... ..+.+..|+.++..+..... ++.+++-...-.++.++.+. +. .
T Consensus 98 WmlykgsW~EEMiNnRnK-----------SvV~SmsWn~dG~kIcIvYe---DGavIVGsvdGNRIwgKeLk---g~--~ 158 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNK-----------SVVVSMSWNLDGTKICIVYE---DGAVIVGSVDGNRIWGKELK---GQ--L 158 (1189)
T ss_pred EeeecccHHHHHhhCcCc-----------cEEEEEEEcCCCcEEEEEEc---cCCEEEEeeccceecchhcc---hh--e
Confidence 998877644333221111 12233444444433333222 22333333333333333322 21 2
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCC-------eeeeEe----e-CCCCeEEEEEee-------cCCCEEEEEEcC
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGND-------HCLRVF----P-HSNYVTCVHFNP-------VDDNYFISGSID 416 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~-------~~~~~~----~-h~~~V~~v~fsp-------~~~~~l~sgs~D 416 (686)
...+.|++|. .++.+-..|.+.++|.... .|.... . ....|..+.|.. .+...|+.+-.+
T Consensus 159 l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 3478899998 7777777899999997643 221111 1 233466666642 267789999999
Q ss_pred CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC---------cEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG---------DCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
|.+.|..-.+......++..-.+..+.|+++|..|++++.+. .|.+|..-... .+..+.+..
T Consensus 239 Gr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i---------~gtlkvpg~ 309 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHI---------VGTLKVPGS 309 (1189)
T ss_pred ceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhh---------eEEEecCCc
Confidence 999987665554444445556788999999999999987643 35555433221 122344567
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEE--eC---CCcEEEEeCCCCC
Q 005646 488 RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSA--GE---DSNVYMWNCIGHE 547 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sg--s~---Dg~V~iWd~~~~~ 547 (686)
.|+++.|-. . .+-+.-..|+.|.+-+..-...|---.+.++-. .. .-.|.+||..+.+
T Consensus 310 ~It~lsWEg-~-gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 310 CITGLSWEG-T-GLRIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNE 372 (1189)
T ss_pred eeeeeEEcC-C-ceEEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccCh
Confidence 899999976 3 344445568888887765433322222222211 12 2358899998876
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=4.4e-08 Score=107.17 Aligned_cols=188 Identities=18% Similarity=0.192 Sum_probs=118.6
Q ss_pred eeecCCCccceeecc---ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEE-EEeCCC--cEEEEEeec
Q 005646 208 RVRLNEEDAMFCSKV---QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDG--VVRLWQVVE 281 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d---~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg--~I~vWd~~~ 281 (686)
.++++++.++..+.. ..|.+|++...... .+....+.+....|+|||++|+ +...++ .|.+||+.+
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~--------~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE--------QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS 276 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEE--------EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 567888888776543 36788887654321 1222334455789999999887 444555 466777766
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
++. ..+..+........
T Consensus 277 ~~~---------------------------------------------------------------~~lt~~~~~~~~~~ 293 (430)
T PRK00178 277 RQL---------------------------------------------------------------SRVTNHPAIDTEPF 293 (430)
T ss_pred CCe---------------------------------------------------------------EEcccCCCCcCCeE
Confidence 541 11222334455678
Q ss_pred eeCCC-EEEEEE-CCC--cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC-C--cEEEEecCCCcEEEEec
Q 005646 362 WSKNN-YLLSAS-IDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-G--KVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 362 ~s~~~-~L~s~s-~Dg--~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-g--~V~iwd~~~~~~~~~~~ 434 (686)
|+|++ .|+..+ .++ .|.++++.+++...............|+| ++++|+..+.+ + .|.+||+.+++...+..
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCCCEEEccC
Confidence 99998 555544 333 57777887776544332333445678999 88888777653 3 58889999887654433
Q ss_pred cCCcEEEEEEccCCCEEEEEecC---CcEEEEeCCCC
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDN 468 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~ 468 (686)
. .......|+|||+.++..+.+ ..+.++++...
T Consensus 373 ~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 373 T-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred C-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2 223356899999999887654 24667777543
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.99 E-value=4.7e-07 Score=106.22 Aligned_cols=313 Identities=14% Similarity=0.160 Sum_probs=192.5
Q ss_pred Ccceeeec--CCCccceeeccceEEEEEc----CCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 204 GEGERVRL--NEEDAMFCSKVQRVKVYHC----KKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 204 ~~~~~~s~--~~~~l~~g~~d~~v~vw~~----~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
..+.++.+ +.+.++.+..+|.|.+... .....+.. ..=...|.+++||||+..||.+..+++|.+-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--------G~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIV--------GSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEE--------EEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 45555553 4557888899999999833 32222221 1235689999999999999999989988876
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
. .+.+.+.+.......... .....+.|++.....-....+.... ..-++.+- ......+. +...-
T Consensus 148 t-~~fd~i~E~~l~~~~~~~--------~~~VsVGWGkKeTQF~Gs~gK~aa~--~~~~p~~~---~~d~~~~s-~dd~~ 212 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFGE--------SKHVSVGWGKKETQFHGSAGKAAAR--QLRDPTVP---KVDEGKLS-WDDGR 212 (928)
T ss_pred e-ccceEEEEeecCccccCC--------CceeeeccCcccCccCcchhhhhhh--hccCCCCC---ccccCccc-cCCCc
Confidence 4 555656555544322110 1112222222211111000000000 00000000 00011223 45566
Q ss_pred eEEEeeCCC-EEEEEEC---C---CcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEc---CCcEEEEecCC
Q 005646 358 LDLSWSKNN-YLLSASI---D---KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLS 426 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~---D---g~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~---Dg~V~iwd~~~ 426 (686)
..++|-.|| ++|..+. . ..+|||+-+ |....+-. -.+--.+++|-| .|++|++... ...|.+|.-+.
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNG 290 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNG 290 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCC
Confidence 789999999 8777664 2 579999865 55443333 334446789999 9999998775 34566666433
Q ss_pred CcEEE----EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 427 CHVVD----WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 427 ~~~~~----~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
-+--. +......|..+.|++|+..||+-..|. |.+|-..+.+.-++.++..... ..+..+.|+|.++..|
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-----~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-----ESVNFVKWDPEKPLRL 364 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-----CCCCceEECCCCCCEE
Confidence 22211 112346799999999999999976554 9999999988777666543322 3345599999888888
Q ss_pred EEEeCCCcEEEEeCC--------------------------------------------------cceeEcCCCCEEEEE
Q 005646 503 MVSCADSQVRILQGP--------------------------------------------------NVIGKYKDGKHIVSA 532 (686)
Q Consensus 503 ~~~s~D~~I~iwd~~--------------------------------------------------~~~~~~~dg~~l~sg 532 (686)
.+.+.++.+..++.. +.++|++++..+++-
T Consensus 365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE
Confidence 888887777665411 125566688779999
Q ss_pred eCCCcEEEEeCCCCC
Q 005646 533 GEDSNVYMWNCIGHE 547 (686)
Q Consensus 533 s~Dg~V~iWd~~~~~ 547 (686)
..||.|.+|......
T Consensus 445 ~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKN 459 (928)
T ss_pred ECCCCEEEEEecCCC
Confidence 999999999976543
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.99 E-value=1.1e-09 Score=126.67 Aligned_cols=181 Identities=18% Similarity=0.289 Sum_probs=138.9
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
+...+.++|+.||.|++|.+........ .+ .+....|+.+.|+.+|+.+..+..||.+.+|.+..
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~----~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--------- 2282 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVC----FR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--------- 2282 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEE----ee--ccCcchhhhhhhcccCCceeeeccCCceeecccCC---------
Confidence 3445779999999999998876443211 11 12338899999999999999999999999998751
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s 370 (686)
++....+.|.....+..|-. ..+++
T Consensus 2283 ------------------------------------------------------k~~~s~qchnk~~~Df~Fi~-s~~~t 2307 (2439)
T KOG1064|consen 2283 ------------------------------------------------------KPYTSWQCHNKALSDFRFIG-SLLAT 2307 (2439)
T ss_pred ------------------------------------------------------cceeccccCCccccceeeee-hhhhc
Confidence 35566677888888888876 34555
Q ss_pred EE---CCCcEEEEECCCCeeeeE--eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEc
Q 005646 371 AS---IDKTVRLWRVGNDHCLRV--FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (686)
Q Consensus 371 ~s---~Dg~V~iWd~~~~~~~~~--~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~s 445 (686)
++ .++.+.+||.--...... .-|.+.++++++-| ...+|++|+.+|.|++||++..++...+.. +.
T Consensus 2308 ag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~ 2378 (2439)
T KOG1064|consen 2308 AGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD 2378 (2439)
T ss_pred cccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh
Confidence 43 578999999754332222 33999999999999 899999999999999999999887644432 33
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
...++++|+..|.++||++....+.
T Consensus 2379 -~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2379 -TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred -hhheeeccCcccceEEEEccccchh
Confidence 4568999999999999999876543
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.6e-07 Score=97.67 Aligned_cols=306 Identities=15% Similarity=0.193 Sum_probs=185.7
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-----------CCcE
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-----------DGVV 274 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-----------Dg~I 274 (686)
..++++.|.+|++-...| |.+|--. .+ .+.+.+ .|. .|.-+.|||+.+||+|=+. -..+
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~----~f---~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGE----SF---DRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCc----cH---HHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence 456889999999887766 7788322 11 112222 254 4889999999999999653 2679
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
+|||+.+|.....+...........+ .-|+.+........ ...+.++....+.+.++.. -..
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~----------frWS~DdKy~Arm~----~~sisIyEtpsf~lld~Ks----lki 346 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPI----------FRWSHDDKYFARMT----GNSISIYETPSFMLLDKKS----LKI 346 (698)
T ss_pred EEEEccccchhcceeccCCCccccce----------EEeccCCceeEEec----cceEEEEecCceeeecccc----cCC
Confidence 99999999988887764332211111 11222211111110 0122222222222222111 123
Q ss_pred CCeeEEEeeCCC-EEEEEEC-----CCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEE----------EcCC
Q 005646 355 GEILDLSWSKNN-YLLSASI-----DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISG----------SIDG 417 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~-----Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sg----------s~Dg 417 (686)
..|....|+|.+ .||-=.. -..+.|-.+.+++.+++-. ++-.=-.+.|.. ++.+|+.- +.-.
T Consensus 347 ~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 347 SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred ccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEe
Confidence 568888999988 5553221 2456777777777776655 322222345554 66666542 2223
Q ss_pred cEEEEecCCCcE-EEEeccCCcEEEEEEccCCCEEEEEec---CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 418 KVRIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 418 ~V~iwd~~~~~~-~~~~~~~~~V~~v~~spdg~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
.+-|+.++...+ +.....+..|.+.+|-|.|..+++-+. ..++.+|.+.+....... .+.-.....+.+.
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l------Vk~~dk~~~N~vf 499 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL------VKELDKKFANTVF 499 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh------hhhhcccccceEE
Confidence 466777776553 466778899999999999998776433 467999988742211110 0111224478899
Q ss_pred EeCCCCCeEEEE---eCCCcEEEEeCC---------------cceeEcCCCCEEEEEeC------CCcEEEEeCCCCC
Q 005646 494 FLPQDSSKVMVS---CADSQVRILQGP---------------NVIGKYKDGKHIVSAGE------DSNVYMWNCIGHE 547 (686)
Q Consensus 494 fsp~~~~~l~~~---s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs~------Dg~V~iWd~~~~~ 547 (686)
|+| .+..++++ +..|.+.++|.. +-+.|.|.|+|++|++. |.--+||++....
T Consensus 500 wsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 500 WSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred EcC-CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 999 66766554 457899999965 33678899999999975 5667888887653
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=5.6e-08 Score=106.32 Aligned_cols=188 Identities=14% Similarity=0.163 Sum_probs=113.4
Q ss_pred eeeecCCCccceeecc-c--eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEE-EeCCCc--EEEEEee
Q 005646 207 ERVRLNEEDAMFCSKV-Q--RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLAS-AGDDGV--VRLWQVV 280 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d-~--~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~--I~vWd~~ 280 (686)
..++++++.++..+.. + .|.+|+....... .+....+.....+|+|||+.|+. .+.++. |.+||+.
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--------~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--------KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--------EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 3678888888876543 2 5777776543221 11111223446899999998765 566665 5555665
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
+++. ..+..+.......
T Consensus 295 tg~~---------------------------------------------------------------~~lt~~~~~~~~p 311 (448)
T PRK04792 295 TKAL---------------------------------------------------------------TRITRHRAIDTEP 311 (448)
T ss_pred CCCe---------------------------------------------------------------EECccCCCCccce
Confidence 5431 1222234455678
Q ss_pred EeeCCC-EEEEEE-CCC--cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCCcEEEEe
Q 005646 361 SWSKNN-YLLSAS-IDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWV 433 (686)
Q Consensus 361 ~~s~~~-~L~s~s-~Dg--~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~ 433 (686)
+|+|++ .|+..+ .++ .|.++|+.+++......+.......+|+| ++++|+..+. ++ .|.++|+.+++...+.
T Consensus 312 ~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 312 SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence 999999 555444 344 46666777776544322333445678999 8888877655 34 4566788887755433
Q ss_pred ccCCcEEEEEEccCCCEEEEEecC-Cc--EEEEeCCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMM-GD--CRFYNVSD 467 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~d-g~--i~iwd~~~ 467 (686)
.. .......|+|||+.|+..+.+ |. +++++...
T Consensus 391 ~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 391 ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 22 122345899999988876654 33 66777643
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=9.4e-08 Score=103.74 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=80.1
Q ss_pred CeeEEEeeCCC-EEEEEE-CCCcEEEEEC--CC-CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCC
Q 005646 356 EILDLSWSKNN-YLLSAS-IDKTVRLWRV--GN-DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLS 426 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s-~Dg~V~iWd~--~~-~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~ 426 (686)
.....+|+||| .|+..+ .++...||.+ .. +.....+. +...+....|+| +++.|+..+.+ ..|.+||+.+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC
Confidence 44567999999 666554 5676666644 32 22333343 456778899999 89988876543 3699999999
Q ss_pred CcEEEEeccCCcEEEEEEccCCCEEEEEec---CCcEEEEeCCCCee
Q 005646 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHL 470 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~spdg~~l~~gs~---dg~i~iwd~~~~~~ 470 (686)
++...+......+....|+|||+.|+.... ...|+++|+.+++.
T Consensus 361 g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 361 GRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 987766554456778999999998876443 34688889877654
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.94 E-value=5.3e-07 Score=107.73 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=104.1
Q ss_pred eEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee---------------CCCCeEEEEEeecCCC-EEEEEEcCCcE
Q 005646 358 LDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP---------------HSNYVTCVHFNPVDDN-YFISGSIDGKV 419 (686)
Q Consensus 358 ~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---------------h~~~V~~v~fsp~~~~-~l~sgs~Dg~V 419 (686)
.+++++| ++ ++++.+.++.|++||..++....... .-...+.|+++| +++ ++++-+.+++|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeE
Confidence 4789999 45 66677788999999998775532111 112456799999 776 56666778999
Q ss_pred EEEecCCCcEEEEec--------------c--------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 420 RIWAVLSCHVVDWVD--------------I--------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 420 ~iwd~~~~~~~~~~~--------------~--------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
++||+.++....... . -.....++++++|+.+++-+.+++|++||..++.......
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-- 842 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-- 842 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec--
Confidence 999998765322110 0 1124689999999988888899999999998765432110
Q ss_pred eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc--EEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ--VRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~--I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+.. +..||. --.++.+..+++.++|+.+++-+.++.|++||+.+++
T Consensus 843 -~G~~----------------------G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 843 -TGKA----------------------GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred -cCCc----------------------CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 0000 000000 0001223344444477777777777888888887754
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.89 E-value=1.4e-06 Score=90.33 Aligned_cols=243 Identities=8% Similarity=0.011 Sum_probs=144.4
Q ss_pred eecCCCccceee----------ccceEEEEEcCCccccccccccCc--eecccCCceEEEEEeeCCCEEEEEeC--CCcE
Q 005646 209 VRLNEEDAMFCS----------KVQRVKVYHCKKRSKELSALYKGQ--EIQAHDGSILTMKFSPDGQYLASAGD--DGVV 274 (686)
Q Consensus 209 ~s~~~~~l~~g~----------~d~~v~vw~~~~~~~~~~~~~~~~--~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I 274 (686)
++++++.+..+. .+..|.|||.......- .+.... +++ ....-..++++|||++|+.... +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i~~p~~p~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DIELPEGPRFL-VGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EEccCCCchhh-ccCccceEEECCCCCEEEEecCCCCCEE
Confidence 777777665554 47899999987654321 111000 000 1223447899999999998763 6899
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
-|.|+.+++.+.++..+. |....+........... ++......+..... ...-+..+|+....++. .
T Consensus 131 ~VvD~~~~kvv~ei~vp~----~~~vy~t~e~~~~~~~~--Dg~~~~v~~d~~g~--~~~~~~~vf~~~~~~v~-----~ 197 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPD----CYHIFPTANDTFFMHCR--DGSLAKVGYGTKGN--PKIKPTEVFHPEDEYLI-----N 197 (352)
T ss_pred EEEECCCCcEEEEEeCCC----CcEEEEecCCccEEEee--cCceEEEEecCCCc--eEEeeeeeecCCccccc-----c
Confidence 999999999999888743 22222211111111111 11111111111111 11111111110000100 1
Q ss_pred CCeeEEEeeC-CC-EEEEEECCCcEEEEECCCC-----eeeeEee--------CCCCeEEEEEeecCCCEEEEEEc----
Q 005646 355 GEILDLSWSK-NN-YLLSASIDKTVRLWRVGND-----HCLRVFP--------HSNYVTCVHFNPVDDNYFISGSI---- 415 (686)
Q Consensus 355 ~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~-----~~~~~~~--------h~~~V~~v~fsp~~~~~l~sgs~---- 415 (686)
.+ .+.+ +| +++.... |+|.+-|+... +.+..+. ..+.+.-++++| +++.++....
T Consensus 198 rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 198 HP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAK 271 (352)
T ss_pred CC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCcc
Confidence 11 3455 66 5555444 99999996443 3333322 234455699999 7777777431
Q ss_pred ------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCC-EEEEEe-cCCcEEEEeCCCCeeee
Q 005646 416 ------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-GGIVGS-MMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 416 ------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~~gs-~dg~i~iwd~~~~~~~~ 472 (686)
.+.|.++|..+++.+..+.....+..++++|||+ .|++.. .++.|.++|+.+++...
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 2479999999999999888888999999999999 777766 57889999999887653
No 266
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.89 E-value=1.2e-08 Score=118.38 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=151.3
Q ss_pred ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
+.|-..|.++.-+|.. +.+||+.||.|++|....++.+..+. -+..|+.+.|+. .|+.+..+..||.+.+|.+...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCc
Confidence 3455678888888888 99999999999999999999888887 458899999999 8999999999999999999977
Q ss_pred cEEEEeccCCcEEEEEEccCCCEEEEEe---cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 428 ~~~~~~~~~~~V~~v~~spdg~~l~~gs---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
....+..|....+.+.|-. ..+++++ .++.+.+||..-..... .+ ...|...++++++.| ..+++++
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s----~v---~~~H~~gaT~l~~~P-~~qllis 2353 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS----LV---HTCHDGGATVLAYAP-KHQLLIS 2353 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc----ee---eeecCCCceEEEEcC-cceEEEe
Confidence 7778888888888888865 4566643 46789999975332211 11 266888999999999 7899999
Q ss_pred EeCCCcEEEEeCCcc------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 505 SCADSQVRILQGPNV------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 505 ~s~D~~I~iwd~~~~------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|+.+|.|++||.... .++. ...++++|+..|.|+||++....
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQALD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhhhh-hhheeeccCcccceEEEEccccc
Confidence 999999999997642 2233 77899999999999999998754
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=6.3e-09 Score=107.35 Aligned_cols=232 Identities=15% Similarity=0.199 Sum_probs=154.1
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+.||+..|..++--.+.+-+++++.|++|++|.+..... +..
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-------~~~----------------------------- 772 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-------EIG----------------------------- 772 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-------ccc-----------------------------
Confidence 46789999999998877888899999999999999864220 000
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTC 399 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~ 399 (686)
...+..+++.|..+|.++-|-.+. +++ +.|+.|.+||.--++.+.... ..+.+..
T Consensus 773 -------------------tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ 831 (1034)
T KOG4190|consen 773 -------------------TSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGN 831 (1034)
T ss_pred -------------------cceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCce
Confidence 012345677899999999998876 554 458999999998887776443 3334444
Q ss_pred EEEeec-CCCEEEEE-EcCCcEEEEecCCCcEEE-Ee-----ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 400 VHFNPV-DDNYFISG-SIDGKVRIWAVLSCHVVD-WV-----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 400 v~fsp~-~~~~l~sg-s~Dg~V~iwd~~~~~~~~-~~-----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
+..-|. +..+++.| +...+|+++|.+.+..+. +. .....+.+++..|.|+.++++-.+|.|.+.|.++++.+
T Consensus 832 ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 832 IKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred eEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 444442 44555555 788999999999887552 22 22355889999999999999999999999999998854
Q ss_pred eeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE-EeCCcceeEcC-------------CCCEEEEEeCCCc
Q 005646 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI-LQGPNVIGKYK-------------DGKHIVSAGEDSN 537 (686)
Q Consensus 472 ~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i-wd~~~~~~~~~-------------dg~~l~sgs~Dg~ 537 (686)
..... ..... +++.....+.++....|.++.+ |...+.+.... -|..|+++.....
T Consensus 912 Nswrp--------mecdl--lqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~ 981 (1034)
T KOG4190|consen 912 NSWRP--------MECDL--LQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNI 981 (1034)
T ss_pred ccCCc--------ccchh--hhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcE
Confidence 32110 01111 1222112344555555666666 65443332221 3556677666666
Q ss_pred EEEEe
Q 005646 538 VYMWN 542 (686)
Q Consensus 538 V~iWd 542 (686)
+.||.
T Consensus 982 lgVYa 986 (1034)
T KOG4190|consen 982 LGVYA 986 (1034)
T ss_pred EEEEe
Confidence 67765
No 268
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.6e-07 Score=98.76 Aligned_cols=114 Identities=13% Similarity=0.225 Sum_probs=96.9
Q ss_pred ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
..|.+.|.++.++.+- .|.|++.|+.+..|+....+.++.+. .+..+.+++.+| |+.++++++ +.|.+||+.+++
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~ke 175 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKE 175 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCce
Confidence 3699999999998776 99999999999999999999999888 778899999999 899999987 689999999999
Q ss_pred EE-EEeccCCcEEEEEEccC-----CCEEEEEe-cCCcEEEEeCCC
Q 005646 429 VV-DWVDIRQIVTAVCYRPD-----GQGGIVGS-MMGDCRFYNVSD 467 (686)
Q Consensus 429 ~~-~~~~~~~~V~~v~~spd-----g~~l~~gs-~dg~i~iwd~~~ 467 (686)
++ .+.+|.++|.++.|.-+ |.+++++. .+..+.+|-+..
T Consensus 176 vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 176 VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 87 66688999999999887 77776643 345577776543
No 269
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=7.8e-07 Score=93.06 Aligned_cols=148 Identities=20% Similarity=0.330 Sum_probs=108.9
Q ss_pred CeeEEEeeCCC--EEE--EEECCC---------cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEE--EcCCcEE
Q 005646 356 EILDLSWSKNN--YLL--SASIDK---------TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG--SIDGKVR 420 (686)
Q Consensus 356 ~V~~l~~s~~~--~L~--s~s~Dg---------~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sg--s~Dg~V~ 420 (686)
.=..+.|++-| +|+ +..-|+ ++++.++....+.-.+...++|.++.|+| ++..|+++ -.=.++.
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSP-SGREFAVVYGFMPAKVT 297 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECC-CCCEEEEEEecccceEE
Confidence 33578898877 433 333344 68899988777777788899999999999 77766654 3557899
Q ss_pred EEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec---CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 421 iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
|||++...+..+. .++=+++-|+|.|++++.++. .|.+-|||+.+.+++.... ...-+-+.|+|
T Consensus 298 ifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----------a~~tt~~eW~P- 364 (566)
T KOG2315|consen 298 IFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----------AANTTVFEWSP- 364 (566)
T ss_pred EEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----------cCCceEEEEcC-
Confidence 9999876554443 455678999999999998765 5789999999866543221 13356789999
Q ss_pred CCCeEEEEeC------CCcEEEEeCC
Q 005646 498 DSSKVMVSCA------DSQVRILQGP 517 (686)
Q Consensus 498 ~~~~l~~~s~------D~~I~iwd~~ 517 (686)
++.+++++.. |+.++||+..
T Consensus 365 dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEec
Confidence 7777776653 7888888864
No 270
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.83 E-value=4.5e-06 Score=88.27 Aligned_cols=250 Identities=16% Similarity=0.237 Sum_probs=153.2
Q ss_pred eeeecCCCccceeec----cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeec
Q 005646 207 ERVRLNEEDAMFCSK----VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVE 281 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~----d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~ 281 (686)
..++++++.|.+... .+.|..|.+......+..+ .........-..++++|++++|+++.. +|.|.++++..
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~---~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL---NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE---EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe---eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 455667777666554 5789999887653222222 222223345567999999999999975 89999999987
Q ss_pred Ceeeeeec-cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 282 DERLTEVD-IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
...+.... ... .... . ..+ -........++
T Consensus 119 ~g~l~~~~~~~~-------------------------------~~g~--------g-------~~~---~rq~~~h~H~v 149 (345)
T PF10282_consen 119 DGSLGEVVQTVR-------------------------------HEGS--------G-------PNP---DRQEGPHPHQV 149 (345)
T ss_dssp TSEEEEEEEEEE-------------------------------SEEE--------E-------SST---TTTSSTCEEEE
T ss_pred Ccccceeeeecc-------------------------------cCCC--------C-------Ccc---cccccccceeE
Confidence 43222110 000 0000 0 000 00123446789
Q ss_pred EeeCCC-EEEEEE-CCCcEEEEECCCCe--ee--eE--eeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecC--CCcE
Q 005646 361 SWSKNN-YLLSAS-IDKTVRLWRVGNDH--CL--RV--FPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVL--SCHV 429 (686)
Q Consensus 361 ~~s~~~-~L~s~s-~Dg~V~iWd~~~~~--~~--~~--~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~--~~~~ 429 (686)
.++|++ +|++.. ....|.+|++.... .. .. +........++|+| ++++++... .+++|.++++. ++..
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCce
Confidence 999998 665543 34579999997665 32 22 23667789999999 887776554 57889999998 4433
Q ss_pred E--EEec-----c--CCcEEEEEEccCCCEEEEEec-CCcEEEEeCC--CCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 430 V--DWVD-----I--RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 430 ~--~~~~-----~--~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
. .... . ......|+++|||++|+++.. .+.|.+|++. ++++.....+... ......++++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~------G~~Pr~~~~s~- 301 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG------GKFPRHFAFSP- 301 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES------SSSEEEEEE-T-
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC------CCCccEEEEeC-
Confidence 2 1111 1 125788999999999888664 6779999994 3455443333222 24478999999
Q ss_pred CCCeEEEEe-CCCcEEEEeC
Q 005646 498 DSSKVMVSC-ADSQVRILQG 516 (686)
Q Consensus 498 ~~~~l~~~s-~D~~I~iwd~ 516 (686)
++++|+++. .++.|.+|+.
T Consensus 302 ~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 302 DGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEecCCCeEEEEEE
Confidence 677777665 5678888864
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.83 E-value=4e-08 Score=95.08 Aligned_cols=214 Identities=22% Similarity=0.420 Sum_probs=138.6
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
..-|+++.|...|.||+||...|.|.++.-.... -.+.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~cey----------------------------------------- 63 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCEY----------------------------------------- 63 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccc-ccch-----------------------------------------
Confidence 4579999999999999999999999999754322 0000
Q ss_pred ceEEEeCCccccccCCCeEEeccC------------CCCeeEEEeeCCC---EEEEEECCCcEEEEECCCCee-------
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGH------------SGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHC------- 387 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h------------~~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~------- 387 (686)
+.+.+|++| ...|..+.|..++ .++..+.|++|++|.+.....
T Consensus 64 ---------------kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nn 128 (460)
T COG5170 64 ---------------KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENN 128 (460)
T ss_pred ---------------hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccc
Confidence 112222223 2357888887665 788888999999998854310
Q ss_pred -----------------------------------eeEe--eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC---
Q 005646 388 -----------------------------------LRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--- 427 (686)
Q Consensus 388 -----------------------------------~~~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~--- 427 (686)
.+.+ .|.--|+++.|+. +...++++ .|=.|.+|++.-.
T Consensus 129 ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~s 206 (460)
T COG5170 129 LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGS 206 (460)
T ss_pred cccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCCc
Confidence 0111 1667788999987 66666664 5788999988632
Q ss_pred -cEEEEecc-----CCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeee----EEeec----cccCCCCCeEEE
Q 005646 428 -HVVDWVDI-----RQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAE----ICVHS----KKKAPCKRITGF 492 (686)
Q Consensus 428 -~~~~~~~~-----~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~----~~~~~----~~~~~~~~I~~l 492 (686)
.++....+ ...|++..|+|.. ..+.-.+..|.|++-|++...+-.... ....+ ....-...|..+
T Consensus 207 FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~ 286 (460)
T COG5170 207 FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDF 286 (460)
T ss_pred eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcce
Confidence 23444333 3458999999954 455567789999999998543321100 00000 001122446667
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCc
Q 005646 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAH 551 (686)
Q Consensus 493 ~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~ 551 (686)
.|++ +|+||++-+. -+|+|||++..+.+..
T Consensus 287 kFs~----------------------------ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 287 KFSD----------------------------NGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred EEcC----------------------------CCcEEEEecc-ceEEEEecccccCCce
Confidence 7776 8999987654 4899999988775433
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=6.1e-07 Score=85.56 Aligned_cols=222 Identities=16% Similarity=0.116 Sum_probs=143.7
Q ss_pred eeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-----CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-----DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 219 g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-----dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
.+....+-+|+.....+.....+. .|.|.| ...+||.||.-|...+|...+.+...
T Consensus 48 i~~t~sv~i~~~y~N~~~iv~~y~------------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~------- 108 (344)
T KOG4532|consen 48 ISKTISVPINSHYSNPKGIVEFYT------------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHL------- 108 (344)
T ss_pred ccceeeeEeccccCCchhhEEeee------------cccccchHhhccccEEEeccccceeeeecccCcccce-------
Confidence 456677888887766554444443 345544 24489999999999999988765211
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC-C-EEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-N-YLLSA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~-~L~s~ 371 (686)
.....|...|.-+.-.-+ . .+..+
T Consensus 109 ------------------------------------------------------~~cd~snn~v~~~~r~cd~~~~~~i~ 134 (344)
T KOG4532|consen 109 ------------------------------------------------------YQCDVSNNDVTLVKRYCDLKFPLNIA 134 (344)
T ss_pred ------------------------------------------------------eeecccccchhhhhhhcccccceeec
Confidence 111112222221111111 2 67888
Q ss_pred ECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EE--EeccCCcEEEEEEcc
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VD--WVDIRQIVTAVCYRP 446 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~--~~~~~~~V~~v~~sp 446 (686)
+.|.++++.++.-+....... .+-.+.+++++| ++.++++.+....|-.|.+..... +. .......-.+..|+.
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred cCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 999999999987654433332 223489999999 999999999999999999875432 22 223344556789999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC-eEEEEeCCCcEEEEeCC
Q 005646 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS-KVMVSCADSQVRILQGP 517 (686)
Q Consensus 447 dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~-~l~~~s~D~~I~iwd~~ 517 (686)
....+|++++||++.|||++........ ....+..|.+.+..+.|++.+.- +|+..-.-+.+.+.|+.
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~---~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMATPMAE---ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CcceEEEEecCCcEEEEEecccccchhh---hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 9999999999999999999865533221 12234458899999999984433 23333333455555544
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.82 E-value=3.6e-08 Score=95.04 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=126.2
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..++..+..++++-.+|.+.+-+.. ...+...|.+++|.-+++..+|+. +.+++.|||.|+.+..||+...+.
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t-----~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~- 200 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYET-----EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT- 200 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecc-----eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-
Confidence 4566667777888888888743321 223445678999999999999986 567999999999999999973220
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
+ ..+..+-|...|.++.-+|.
T Consensus 201 --~---------------------------------------------------------i~~n~kvH~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 201 --F---------------------------------------------------------IWHNSKVHTSGVVSIYSSPP 221 (339)
T ss_pred --e---------------------------------------------------------eeecceeeecceEEEecCCC
Confidence 0 01112348899999998887
Q ss_pred C--EEEEEECCCcEEEEECC-CCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE------EEeccC
Q 005646 366 N--YLLSASIDKTVRLWRVG-NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV------DWVDIR 436 (686)
Q Consensus 366 ~--~L~s~s~Dg~V~iWd~~-~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~------~~~~~~ 436 (686)
. ++++|+.|-.|++||.+ -++++..-.-.+.|+.+.++|.....++.++.-.-.+|-++...... ....|.
T Consensus 222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 222 KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccccc
Confidence 5 99999999999999998 57788777778999999999955444444444444677777654322 122334
Q ss_pred CcEEEEEEccCCCEEEEEe
Q 005646 437 QIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs 455 (686)
+.+..-.|......|++++
T Consensus 302 Sl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 302 SLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred ceeeccccccccceeeeee
Confidence 4444444433324566643
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=8.9e-09 Score=109.86 Aligned_cols=249 Identities=17% Similarity=0.253 Sum_probs=163.5
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
++-++......-.||.+.+....... -.+.+|...|+.|.|.|. ...|||++.|-.++.||+.+..
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss~~aIe----f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--------- 148 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSSSNAIE----FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--------- 148 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCCccceE----EEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---------
Confidence 34455666777778887654432211 236789999999999985 5589999999999999997654
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~ 371 (686)
.++..+......-..++|+-.. .+++.
T Consensus 149 ----------------------------------------------------~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 149 ----------------------------------------------------RPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred ----------------------------------------------------cceeeeecccccCceeeecccCcchhhh
Confidence 2333333344455788898765 77777
Q ss_pred ECCCcEEEEECCCCe-eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--EEEEeccCCcEEEEEEccC
Q 005646 372 SIDKTVRLWRVGNDH-CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRPD 447 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~-~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~~~~V~~v~~spd 447 (686)
+..+.|++||++.+. ++..++ |...|+.++|+......+.+++.||+|+.||..... .........+|..-+|.|-
T Consensus 177 shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF 256 (1081)
T ss_pred ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccccc
Confidence 888899999998764 555555 889999999987667789999999999999987543 3345556778888889997
Q ss_pred CCEEEEEec--CCcEEEEeCCCCeeeee---eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeE
Q 005646 448 GQGGIVGSM--MGDCRFYNVSDNHLELD---AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK 522 (686)
Q Consensus 448 g~~l~~gs~--dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~ 522 (686)
|...++--. +..+.+++.++...... ....+ ....+|...|..+.|-.... ..+..|
T Consensus 257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pV-h~F~GH~D~V~eFlWR~r~e---~~~d~d-------------- 318 (1081)
T KOG0309|consen 257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPV-HTFVGHDDVVLEFLWRKRKE---CDGDYD-------------- 318 (1081)
T ss_pred CceeEeccccCCeeeeeccccchhhhhccccCCcce-eeecCcchHHHHHhhhhccc---ccCCCC--------------
Confidence 665544322 23555665544332211 00011 11344555555555543110 000000
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
...-.|+|-|.|.++++|-+.+.
T Consensus 319 -~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 319 -SRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred -ccceeEEEeecCCceEeeeccHH
Confidence 02246888899999999988663
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.78 E-value=2.2e-06 Score=92.11 Aligned_cols=180 Identities=11% Similarity=0.050 Sum_probs=111.4
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEE-
Q 005646 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVC- 443 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~- 443 (686)
++.++.++.++.|..+|..+++.+........+.+.-.. .++.++.++.+|.|+.||..+++.+-..........+.
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 447888889999999999999998877644444332221 34577778889999999999998774443332211110
Q ss_pred -Ecc--CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC-CCCCeEEEEeCCCcEEEEeCCcc
Q 005646 444 -YRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 444 -~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp-~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
-+| .+..++++..+|.+..+|+.+++........... ..........+.-+| -.+..+++++.++.++.+|..+.
T Consensus 183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~-g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK-GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCC-CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 011 2246788888999999999888765432211000 000000000010011 02356777788888888887653
Q ss_pred ee-E----------cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 520 IG-K----------YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 520 ~~-~----------~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.. | ..++.+|+.++.||.|+.+|..+++
T Consensus 262 ~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 262 RVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred cEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCc
Confidence 11 1 1156778888888999999988775
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.76 E-value=3e-08 Score=105.92 Aligned_cols=155 Identities=19% Similarity=0.331 Sum_probs=106.4
Q ss_pred CeeEEEeeCCC---EEEEEECCCcEEEEECCC--CeeeeE--eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGN--DHCLRV--FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 356 ~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~--~~~~~~--~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
.|-+..|+|.- +-+.......-.+|++.. .+.+.. .+|...|+.+.|+|++...+++++.|-.|..||+++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 45567777654 333333344455788753 233333 23899999999999999999999999999999999865
Q ss_pred E--EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 429 V--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 429 ~--~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
. ..+..-+...+.|+|+--...+.+.+..+.|++||++.+.-.+- ..+.|...|+++.|...-...+++.+
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~-------s~K~~vs~vn~~~fnr~~~s~~~s~~ 221 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC-------SLKGHVSSVNSIDFNRFKYSEIMSSS 221 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceE-------EecccceeeehHHHhhhhhhhhcccC
Confidence 3 24555566778899988555666667888899999987764321 13346777888888875444555555
Q ss_pred CCCcEEEEeCC
Q 005646 507 ADSQVRILQGP 517 (686)
Q Consensus 507 ~D~~I~iwd~~ 517 (686)
.|++|+.||..
T Consensus 222 ~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 222 NDGTVKFWDYS 232 (1081)
T ss_pred CCCceeeeccc
Confidence 55666655543
No 277
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.74 E-value=1.3e-07 Score=89.63 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=100.7
Q ss_pred eEEeccCCCCeeEEEee-CCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeE-----EEEEeecCCCEEEEEE-----c
Q 005646 347 LHEFHGHSGEILDLSWS-KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT-----CVHFNPVDDNYFISGS-----I 415 (686)
Q Consensus 347 ~~~l~~h~~~V~~l~~s-~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~-----~v~fsp~~~~~l~sgs-----~ 415 (686)
.+.+..|.++-.+-+.+ ++..++++..||.+.+.+.+.. ..+.|.-++. +..... .++.+.++. .
T Consensus 82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~ 157 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD---LALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNA 157 (319)
T ss_pred eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHH---Hhhhhhcccccccccccceee-cccEEecCCcceEee
Confidence 34444444433333333 3338899999999999987652 1111211111 111222 344444432 1
Q ss_pred CCcEEEEecCCCcEE-EEeccCCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 416 DGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
-+..++|+++..+.. ........|++++-+|. .+.+++|+.||.+.+||.+.... .....++|..+|..+-
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-------p~S~l~ahk~~i~eV~ 230 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-------PVSLLKAHKAEIWEVH 230 (319)
T ss_pred ccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-------hHHHHHHhhhhhhhee
Confidence 234566666544332 11112233999999994 55677899999999999987632 2234577889999999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
|+|.++..|++++.||.+-.||..
T Consensus 231 FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccCCCchheeEecCCCcEEEEcCC
Confidence 999999999999999999999976
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.74 E-value=4.8e-06 Score=89.42 Aligned_cols=249 Identities=12% Similarity=0.086 Sum_probs=152.1
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
..++.+++++.++.+..+|.............. . ... ... .++..++.++.|+.+..+|..+|+.+.....
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~---~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETGKRLWRVDLDE-R---LSG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCCcEeeeecCCC-C---ccc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence 346677888888888888865443321111110 0 111 111 2466788888999999999988875433321
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s 370 (686)
. +.+.+.-...++.++.
T Consensus 134 ~---------------------------------------------------------------~~~~~~p~v~~~~v~v 150 (377)
T TIGR03300 134 S---------------------------------------------------------------SEVLSPPLVANGLVVV 150 (377)
T ss_pred C---------------------------------------------------------------ceeecCCEEECCEEEE
Confidence 1 0011000012346677
Q ss_pred EECCCcEEEEECCCCeeeeEeeCCCCeEE------EEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc------
Q 005646 371 ASIDKTVRLWRVGNDHCLRVFPHSNYVTC------VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI------ 438 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~------v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~------ 438 (686)
++.++.|..||..+++.+..+........ ... .+..++.+..+|.|..+|+.+++.+-......+
T Consensus 151 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 151 RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCch
Confidence 77899999999999998887764332211 112 234778888899999999999986632221100
Q ss_pred --EEEEEEcc--CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 439 --VTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 439 --V~~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
...+.-+| .+..+++++.+|.++.||..+++....... ........ .+..+++++.|+.+..+
T Consensus 228 ~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----------~~~~~p~~---~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 228 ERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA----------SSYQGPAV---DDNRLYVTDADGVVVAL 294 (377)
T ss_pred hhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc----------CCccCceE---eCCEEEEECCCCeEEEE
Confidence 00111112 355788888999999999998876543221 01112222 34577778888989888
Q ss_pred eCCccee-E-----------c--CCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 515 QGPNVIG-K-----------Y--KDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 515 d~~~~~~-~-----------~--~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|..+... + + ..+.+|++++.||.|+++|..+++
T Consensus 295 d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 295 DRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred ECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 8754311 1 0 156788899999999999988876
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=8.6e-06 Score=87.97 Aligned_cols=113 Identities=13% Similarity=0.020 Sum_probs=73.8
Q ss_pred CCeeEEEeeCCC-EE-EEEECC--CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCC
Q 005646 355 GEILDLSWSKNN-YL-LSASID--KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSC 427 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L-~s~s~D--g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~ 427 (686)
+.+....|+||| .| ++.+.+ ..|.++|+.++.......+........|+| |++.|+-.+. .+ .|.++|+.++
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 445567899999 44 444444 467777888876544433444445668999 8887766653 33 5888888888
Q ss_pred cEEEEeccCCcEEEEEEccCCCEEEEEecC---------CcEEEEeCCCCee
Q 005646 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---------GDCRFYNVSDNHL 470 (686)
Q Consensus 428 ~~~~~~~~~~~V~~v~~spdg~~l~~gs~d---------g~i~iwd~~~~~~ 470 (686)
+.......... ...|+|||+.++..... ..|.+.|+.++..
T Consensus 312 ~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 312 SVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 76543322211 24899999998876654 2577778876653
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.69 E-value=8e-08 Score=96.64 Aligned_cols=86 Identities=24% Similarity=0.528 Sum_probs=73.6
Q ss_pred EEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe--eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
..+-||-..+++++|+||+ +++++..|..||+-....-..+..| +|...|..++.-+ +..|++||.|++|++||+
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEec
Confidence 3446899999999999999 9999999999999888777666555 4999999999976 556899999999999999
Q ss_pred CCCcEEEEecc
Q 005646 425 LSCHVVDWVDI 435 (686)
Q Consensus 425 ~~~~~~~~~~~ 435 (686)
.+++.+...+.
T Consensus 223 ~sgk~L~t~dl 233 (390)
T KOG3914|consen 223 TSGKLLDTCDL 233 (390)
T ss_pred ccCCcccccch
Confidence 99998755543
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.68 E-value=1.6e-05 Score=81.55 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=117.6
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCC-cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDG-VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg-~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------------------------------------------ 394 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------------------------------------------ 394 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------------------------------------------
Confidence 5888899999988888899999998 899999887762
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEee
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP 404 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp 404 (686)
..+...-+.|.++..+++| +++.+.....+.+.|+.++.....-+ ..+-|+.+.|+|
T Consensus 395 ---------------------kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ 453 (668)
T COG4946 395 ---------------------KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP 453 (668)
T ss_pred ---------------------EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC
Confidence 2334456789999999999 78888878889999999997654433 678899999999
Q ss_pred cCCCEEEEEEcCC----cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEe
Q 005646 405 VDDNYFISGSIDG----KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 405 ~~~~~l~sgs~Dg----~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs 455 (686)
+.++||-+--+| .|+++|+.++++.........=.+-+|.|||++|..-+
T Consensus 454 -nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 454 -NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 999998876665 59999999999887766666556778999999887643
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1.2e-05 Score=87.15 Aligned_cols=177 Identities=8% Similarity=0.083 Sum_probs=119.5
Q ss_pred EEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEE---------ecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 409 YFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVG---------SMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 409 ~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~g---------s~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
+++.|...|+|.++|+.++.+. .+.-|...|.++.|.-..+++-.+ ..-+.+.+-|++++.-. .+
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk-----~f 513 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK-----RF 513 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc-----cc
Confidence 6788999999999999998876 455677888888887666554333 23345777888876533 23
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEc-C------------------
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKY-K------------------ 524 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~-~------------------ 524 (686)
++..+....+|..+..+. .+.+|++...|.-+.+||..+ .+.|+ |
T Consensus 514 R~l~~~despI~~irvS~-~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~ 592 (1062)
T KOG1912|consen 514 RGLQKPDESPIRAIRVSS-SGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSE 592 (1062)
T ss_pred ccCCCCCcCcceeeeecc-cCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhh
Confidence 333455668899999998 789999999999999999732 23333 1
Q ss_pred --------------------------------------------CCCEEEEEeCCCcEEEEeCCCCCCCCcccc----cc
Q 005646 525 --------------------------------------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQA----KT 556 (686)
Q Consensus 525 --------------------------------------------dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~----~~ 556 (686)
.+..|+.|..+|++.+||+........... .-
T Consensus 593 n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~ 672 (1062)
T KOG1912|consen 593 NLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWKDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAH 672 (1062)
T ss_pred ceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhccCCeeEeecccCceeEEecccccccCccCCCCchhh
Confidence 577899999999999999876542110000 00
Q ss_pred ccccccccC-CcEEEecCCCCcCCCCCCCCcccccC
Q 005646 557 IRSLERFTT-NASIAIPWCGLKCGNAEKEPQLHVSD 591 (686)
Q Consensus 557 ~~~~~~~~~-~~~v~~s~~g~~~~~~~~g~~l~~~~ 591 (686)
...+..... ...+++--++...|+.+.-+.+..+.
T Consensus 673 ~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~sia 708 (1062)
T KOG1912|consen 673 SLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIA 708 (1062)
T ss_pred heecccCCCCceEEEEecCcceecccccceeeeeec
Confidence 111111111 24566666777888887777766653
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.67 E-value=3.2e-07 Score=88.94 Aligned_cols=237 Identities=17% Similarity=0.269 Sum_probs=140.8
Q ss_pred eeecCCCccceeeccceEEEEEcCCccc-cccccccCceecccC------------CceEEEEEeeCCC--EEEEEeCCC
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSK-ELSALYKGQEIQAHD------------GSILTMKFSPDGQ--YLASAGDDG 272 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~-~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~Lasgs~Dg 272 (686)
.|...|.++++|...|+|.++.-.+... +.. --.++++|. ..|..|.|..++. .++..+.|+
T Consensus 33 efd~tg~YlatGDkgGRVvlfer~~s~~ceyk---f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdk 109 (460)
T COG5170 33 EFDETGLYLATGDKGGRVVLFEREKSYGCEYK---FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDK 109 (460)
T ss_pred EeccccceEeecCCCceEEEeecccccccchh---hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCc
Confidence 3455678999999999999997655431 111 112455665 3588899977643 455566899
Q ss_pred cEEEEEeecCeeee--eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 273 VVRLWQVVEDERLT--EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 273 ~I~vWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
+|++|.+....... +-.+.+ .+.....+.+... +...+. +-+....++. .+|.+..
T Consensus 110 tiKlWKiyeknlk~va~nnls~------~~~~~~~g~~~s~-----~~l~lp--rls~hd~iia---------a~p~rvy 167 (460)
T COG5170 110 TIKLWKIYEKNLKVVAENNLSD------SFHSPMGGPLTST-----KELLLP--RLSEHDEIIA---------AKPCRVY 167 (460)
T ss_pred eeeeeeeecccchhhhcccccc------ccccccCCCcCCH-----HHhhcc--cccccceEEE---------eccceec
Confidence 99999987643111 111000 0000000000000 000000 0000011111 1222333
Q ss_pred -ccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCe-eeeE--ee-CC-----CCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 351 -HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-CLRV--FP-HS-----NYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 351 -~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~-~~~~--~~-h~-----~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
..|.--|.+++++.+...+.++.|=.|.+|++.-.. +... +. |. .-|++..|+|...+.|.-.+..|.|+
T Consensus 168 aNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 468889999999998844445568899999987432 2222 22 32 45899999997778888888899999
Q ss_pred EEecCCCcEE-----------E------EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 421 IWAVLSCHVV-----------D------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 421 iwd~~~~~~~-----------~------~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
+-|++...+. . +......|..+.|+++|+++++-+. -+++|||++..+-
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 9999843221 0 1112345788999999999987654 5899999986553
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.63 E-value=3.2e-07 Score=92.40 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=86.5
Q ss_pred EEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEeccCCcEEEEEEccC
Q 005646 370 SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRPD 447 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~spd 447 (686)
.++....+.+|....+.+...+.|-.-++.|+|+| |+++++++..|.+||+-.......+ ...+|+.-|..++..++
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 45566778888888888888889999999999999 9999999999999999888777666 34578999999999876
Q ss_pred CCEEEEEecCCcEEEEeCCCCeee
Q 005646 448 GQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 448 g~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
. .|++|+.|+++++||+.+++..
T Consensus 206 ~-~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 206 Y-LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred c-eeeecCCCCcEEEEecccCCcc
Confidence 4 5899999999999999998865
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.63 E-value=8.1e-05 Score=87.70 Aligned_cols=330 Identities=18% Similarity=0.223 Sum_probs=190.4
Q ss_pred ecccCcceeeecCCCccceeeccceEEEEEcCC-----------------------cccccc-------c----ccc---
Q 005646 200 VDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKK-----------------------RSKELS-------A----LYK--- 242 (686)
Q Consensus 200 ~~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~-----------------------~~~~~~-------~----~~~--- 242 (686)
++..-.+.+++||++.++..+.++++.+-...- ..++.. . +..
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 444556778899999999999888887654211 001100 0 000
Q ss_pred ----CceecccCCceEEEEEeeCCCEEEEEeC---C---CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeee
Q 005646 243 ----GQEIQAHDGSILTMKFSPDGQYLASAGD---D---GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLF 312 (686)
Q Consensus 243 ----~~~l~~H~~~I~~l~fspdg~~Lasgs~---D---g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (686)
...+. +...-..|+|-.||+|+|+.+. . ..+|||+-+ |.....-.... +.-..+.
T Consensus 199 ~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~-------------gLe~~l~ 263 (928)
T PF04762_consen 199 PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD-------------GLEGALS 263 (928)
T ss_pred CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC-------------CccCCcc
Confidence 01122 4445678999999999998864 2 579999854 54322221111 1123345
Q ss_pred eccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeee--
Q 005646 313 MDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR-- 389 (686)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~-- 389 (686)
|.+.+..+...-+......++.|..+-.+..+ ....+......|..|.|++++ .||..-.|. |.+|-..+.....
T Consensus 264 WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 264 WRPSGNLIASSQRLPDRHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ 341 (928)
T ss_pred CCCCCCEEEEEEEcCCCcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence 55555544444443444444444444332221 111112456688999999999 777666554 9999998876332
Q ss_pred Ee--eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC----C----------------CcEE----------------E
Q 005646 390 VF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL----S----------------CHVV----------------D 431 (686)
Q Consensus 390 ~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~----~----------------~~~~----------------~ 431 (686)
.+ .....+..+.|+|.+...|.....+|.+..++.. . |..+ .
T Consensus 342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~ 421 (928)
T PF04762_consen 342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY 421 (928)
T ss_pred EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce
Confidence 22 2445566799999888888888887877666542 1 1111 1
Q ss_pred EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee------eeeeEEee----ccccCCCCCeEEEEEeCCCCCe
Q 005646 432 WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE------LDAEICVH----SKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 432 ~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~------~~~~~~~~----~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
......+|.+++|++++..+++-..||.+.+|........ ....+... .........+..+.|.. +...
T Consensus 422 ~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 500 (928)
T PF04762_consen 422 ELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTL 500 (928)
T ss_pred EEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEE
Confidence 2234577999999999988999999999999996543221 11111110 01112345678888887 4454
Q ss_pred EEEEeCC---CcEEEEeCCcc------------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 502 VMVSCAD---SQVRILQGPNV------------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 502 l~~~s~D---~~I~iwd~~~~------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+++...+ ..+.+++.... ....++...++.-..||.|...+.....
T Consensus 501 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 501 LVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 4444443 56777765211 1111233335666678888866665543
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.61 E-value=8.3e-06 Score=84.58 Aligned_cols=241 Identities=15% Similarity=0.209 Sum_probs=146.5
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC--CEEEE-----EeCCCcEEEEE
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG--QYLAS-----AGDDGVVRLWQ 278 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~Las-----gs~Dg~I~vWd 278 (686)
+..|+.++.++|-- ....++|+++..+-.+. ....++ ...|....|+|.| .-||. .+.++.++||.
T Consensus 136 ~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~----p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 136 VLKFSIDDKYVARV-VGSSLYIHEITDNIEEH----PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred eeeeeecchhhhhh-ccCeEEEEecCCccccC----chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 56677777776655 56678999863222111 111121 3568888999964 34554 46789999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee---ccCCceEEEeCCccccccCCCeEEeccCCC
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR---RTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 355 (686)
+..+..+....+.......+.+.. .+...+.... ++.....---+..++++.+.-+....+-.+
T Consensus 209 Ip~~s~l~tk~lfk~~~~qLkW~~-------------~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~ 275 (561)
T COG5354 209 IPKNSVLVTKNLFKVSGVQLKWQV-------------LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKD 275 (561)
T ss_pred ccCCCeeeeeeeEeecccEEEEec-------------CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccc
Confidence 987666555444333222222221 1111111111 111111111122233333444444446688
Q ss_pred CeeEEEeeCCC---EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCCCcE
Q 005646 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLSCHV 429 (686)
Q Consensus 356 ~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~~~~ 429 (686)
+|.+..|.|.+ -+++|-++.++.++|++.. +..+.....=+.+.|+| ..++++.++.| |.+-+||......
T Consensus 276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred cceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC-cccEEEEecCCccccceEEeccCCceE
Confidence 99999999987 4455678999999999877 44444455557788999 99999998766 7799999987765
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEEec------CCcEEEEeCCCCe
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNH 469 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~gs~------dg~i~iwd~~~~~ 469 (686)
+...-.....+-+.|+|||+++.+... |..|.|||+....
T Consensus 353 ~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 353 VAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 532222223345679999999888643 7789999987543
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.58 E-value=5.6e-07 Score=85.50 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=74.1
Q ss_pred CcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEeccCCcEEEEEEcc-CCCE
Q 005646 375 KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRP-DGQG 450 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~sp-dg~~ 450 (686)
+..+.|+++..+.+..-. ....|++++-+|...+++++|+.||.+.+||.++.... .+..|+.++..+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 345667665444332222 33559999999977788899999999999999987543 4557889999999999 7889
Q ss_pred EEEEecCCcEEEEeCCCC
Q 005646 451 GIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 451 l~~gs~dg~i~iwd~~~~ 468 (686)
|++++.||.+.-||.++.
T Consensus 239 Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDASTT 256 (319)
T ss_pred eeEecCCCcEEEEcCCCc
Confidence 999999999999998863
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.58 E-value=1.3e-05 Score=96.11 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=86.9
Q ss_pred CeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEe-------------e-C--------CCCeEEEEEeecCCCEEE
Q 005646 356 EILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF-------------P-H--------SNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 356 ~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~-------------~-h--------~~~V~~v~fsp~~~~~l~ 411 (686)
....|+++|++ ++++-+.++.|++||+.++...... . + -.....++++| ++++++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEE
Confidence 45679999998 4455667799999999876532111 0 0 11246889999 889999
Q ss_pred EEEcCCcEEEEecCCCcEEEEeccC--------------CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 412 SGSIDGKVRIWAVLSCHVVDWVDIR--------------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 412 sgs~Dg~V~iwd~~~~~~~~~~~~~--------------~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
+-+.+++|++||..++.+....+.. .....++++++|+.+++-+.++.|++||+.++..
T Consensus 820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999999999988776544321 2467899999999888888999999999988765
No 289
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=6.8e-05 Score=75.21 Aligned_cols=249 Identities=14% Similarity=0.219 Sum_probs=152.8
Q ss_pred eeeecCCCccceeec---cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeecC
Q 005646 207 ERVRLNEEDAMFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVED 282 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~~ 282 (686)
..+.++.+.|.++.. .+.|-.|.++.....+..+-+ +.+.++. -+.++++++|++|+++.. -|.|.++-++..
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-~~~~g~~--p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d 121 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-QTLPGSP--PCYVSVDEDGRFVFVANYHSGSVSVYPLQAD 121 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-cccCCCC--CeEEEECCCCCEEEEEEccCceEEEEEcccC
Confidence 455556655655543 477888887765333332222 2233332 388999999999999976 478999988653
Q ss_pred eeeeee-ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 283 ERLTEV-DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 283 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
..+... ..... . +.-.+. +.-..-+....
T Consensus 122 G~l~~~v~~~~h---------------------------------~----------------g~~p~~-rQ~~~h~H~a~ 151 (346)
T COG2706 122 GSLQPVVQVVKH---------------------------------T----------------GSGPHE-RQESPHVHSAN 151 (346)
T ss_pred Cccccceeeeec---------------------------------C----------------CCCCCc-cccCCccceee
Confidence 211110 00000 0 000000 00112266788
Q ss_pred eeCCC-EEEEEEC-CCcEEEEECCCCeeeeE----eeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCC--CcEEEE
Q 005646 362 WSKNN-YLLSASI-DKTVRLWRVGNDHCLRV----FPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLS--CHVVDW 432 (686)
Q Consensus 362 ~s~~~-~L~s~s~-Dg~V~iWd~~~~~~~~~----~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~--~~~~~~ 432 (686)
+.|++ +|++..- --.|.+|++..++.... +.....-..|.|+| ++++.+... .+++|-+|.... ++...+
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 89999 7666643 34689999997765432 23566789999999 898877665 589999999887 332222
Q ss_pred e---------ccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCC--eeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 433 V---------DIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDN--HLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 433 ~---------~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
. .......+|.++|||++|.++.. ...|-+|.+... ++.+... ...+......+.|.+ .++
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~------~~teg~~PR~F~i~~-~g~ 303 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI------TPTEGQFPRDFNINP-SGR 303 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE------eccCCcCCccceeCC-CCC
Confidence 1 22345778999999999988754 346888877643 4333222 223334477899999 667
Q ss_pred eEEEEeCC-CcEEEEeC
Q 005646 501 KVMVSCAD-SQVRILQG 516 (686)
Q Consensus 501 ~l~~~s~D-~~I~iwd~ 516 (686)
+|+++..+ ..|.+|..
T Consensus 304 ~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 304 FLIAANQKSDNITVFER 320 (346)
T ss_pred EEEEEccCCCcEEEEEE
Confidence 77766654 55776653
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=3.4e-06 Score=91.19 Aligned_cols=233 Identities=15% Similarity=0.187 Sum_probs=160.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC------C------CEEEEEeCCCcE
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------G------QYLASAGDDGVV 274 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g------~~Lasgs~Dg~I 274 (686)
.+...++.-++.-+....|.|-|.. .+...+.+..|...|+.+.|.|- + -+||++...|.|
T Consensus 19 ~A~Dw~~~GLiAygshslV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 19 NAADWSPSGLIAYGSHSLVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccCccceEEEecCceEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 3444455555555566677777643 23335778889999999999873 1 257888888999
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
.+||+..+.. +..+..|.
T Consensus 92 il~d~~~~s~--------------------------------------------------------------~~~l~~~~ 109 (1062)
T KOG1912|consen 92 ILVDFVLASV--------------------------------------------------------------INWLSHSN 109 (1062)
T ss_pred EEEEehhhhh--------------------------------------------------------------hhhhcCCC
Confidence 9999977642 23345578
Q ss_pred CCeeEEEeeCCC-----EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC--
Q 005646 355 GEILDLSWSKNN-----YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-- 426 (686)
Q Consensus 355 ~~V~~l~~s~~~-----~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-- 426 (686)
.+|.++.|-+.. .|+.-....+|.+|+..+|+.+..+. ......|+.+.|-+.+.|..-+..|.|-+-+.-.
T Consensus 110 ~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s 189 (1062)
T KOG1912|consen 110 DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS 189 (1062)
T ss_pred cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC
Confidence 888999997632 67777778899999999999998887 4566778999998888888888888887776532
Q ss_pred -----CcEEE-EeccCC-----------------c--------EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 427 -----CHVVD-WVDIRQ-----------------I--------VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 427 -----~~~~~-~~~~~~-----------------~--------V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
++.+. ..+|.. + ...++|+|.-+.++.......+.++|++-........
T Consensus 190 ep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp 269 (1062)
T KOG1912|consen 190 EPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP 269 (1062)
T ss_pred CCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE
Confidence 11111 111111 0 1236789987777777788899999998665544332
Q ss_pred EEeeccccCCCCCeEEEEEeCC-CCCeEEEEeCCCcEEEEeC
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~-~~~~l~~~s~D~~I~iwd~ 516 (686)
+. .+.+.-+++.|+ ....|+..-.||.+.+|-.
T Consensus 270 ie--------r~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 270 IE--------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred ec--------cCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 21 133445666664 3346778889999999953
No 291
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.53 E-value=3.4e-05 Score=76.92 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=114.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-ccC----Cc
Q 005646 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIR----QI 438 (686)
Q Consensus 364 ~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~----~~ 438 (686)
.++.+++++.++.|..||..+|+.+..+.....+..... . .+..++.++.++.|+.+|..+++++-.. ... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~-~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV-V-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE-E-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceee-e-cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 455888889999999999999999988874433322222 2 5667777888999999999999987542 211 11
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC---CCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
........++..++++..++.|..+|+.+++......... .....+ ...+.+-.... ++ .++++..++.+..+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE-PRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST-T-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEE
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC-CCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEE
Confidence 2233333348889999889999999999998765433211 000000 01112222222 22 666666666422225
Q ss_pred CCcce-----------e-EcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 516 GPNVI-----------G-KYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 516 ~~~~~-----------~-~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+.. . ...++..|+.++.|+.|+.||+.+++
T Consensus 190 ~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 190 LATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 54431 1 34478888888899999999999986
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1e-06 Score=89.68 Aligned_cols=243 Identities=16% Similarity=0.172 Sum_probs=161.2
Q ss_pred eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeecCeeeee
Q 005646 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTE 287 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~~~~~~~ 287 (686)
+....++..+++.||.++.|.-.. .....-...+..|.+.|.+++.+-+|.++.|.+. |..++++|+.+-..+.-
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm 91 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM 91 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence 344557888999999999995322 1122223456789999999999999999999888 99999999988776655
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~- 366 (686)
++....+..+..+... ...+..+..+.... ....+++...- .......-.-|..+|..+.+++.+
T Consensus 92 iKL~~lPg~a~wv~sk-Gd~~s~IAVs~~~s-----------g~i~VvD~~~d--~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 92 IKLVDLPGFAEWVTSK-GDKISLIAVSLFKS-----------GKIFVVDGFGD--FCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred cccccCCCceEEecCC-CCeeeeEEeecccC-----------CCcEEECCcCC--cCccceecccccCceEEEEeecccc
Confidence 5554443333222221 11122222211111 11111111100 011223334599999999999988
Q ss_pred EEEEEECCCcEEEEECCC------CeeeeEee----------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 367 YLLSASIDKTVRLWRVGN------DHCLRVFP----------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~------~~~~~~~~----------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
.+++....|.|.-|.... ......+. .....+++.|+| ++..+.+-+.|.+||+++.++++++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence 888888899999998873 11211221 456789999999 9999999999999999999988654
Q ss_pred EEec---------------------------------cC-CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 431 DWVD---------------------------------IR-QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 431 ~~~~---------------------------------~~-~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
..++ +. ..-+.++|...|++|+-|+.=| |++.++.++...
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 3211 00 1235688999999999887765 889998887754
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.48 E-value=1.7e-05 Score=75.94 Aligned_cols=190 Identities=13% Similarity=0.095 Sum_probs=128.2
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
....++.|+..|...+|........+ +....|...|+-+.=..+ .--+..++.|.++++.++..+....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---- 152 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHL------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---- 152 (344)
T ss_pred cccEEEeccccceeeeecccCcccce------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc----
Confidence 34577888999999999876432211 111223333322211111 2246677889999999886543110
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCC--CeeEEEeeCCC-E
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG--EILDLSWSKNN-Y 367 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~l~~s~~~-~ 367 (686)
.-|.. .+.++++++++ +
T Consensus 153 ------------------------------------------------------------~~h~~~~~~ns~~~snd~~~ 172 (344)
T KOG4532|consen 153 ------------------------------------------------------------AVHNQNLTQNSLHYSNDPSW 172 (344)
T ss_pred ------------------------------------------------------------eeeccccceeeeEEcCCCce
Confidence 11222 37889999999 8
Q ss_pred EEEEECCCcEEEEECCCCe--eeeEe--eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE------EEeccCC
Q 005646 368 LLSASIDKTVRLWRVGNDH--CLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV------DWVDIRQ 437 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~~--~~~~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~------~~~~~~~ 437 (686)
+++.+....|-.|.+.... .++.. ...+.=.+..|+. ....||++..||++.|||++..... ....|.+
T Consensus 173 ~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG 251 (344)
T KOG4532|consen 173 GSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG 251 (344)
T ss_pred EEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC
Confidence 8999999999999987542 22212 2555667888998 8899999999999999999976432 2335788
Q ss_pred cEEEEEEccCCC--EEEEEecCCcEEEEeCCCCeeee
Q 005646 438 IVTAVCYRPDGQ--GGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 438 ~V~~v~~spdg~--~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
.+..+.|+|-|. +|+..-.-+.+.+.|+++.+-.+
T Consensus 252 a~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 252 AFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred ceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 999999998664 45666667889999999876443
No 294
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=3.7e-07 Score=62.61 Aligned_cols=35 Identities=40% Similarity=0.900 Sum_probs=33.5
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
+++++|.+.|++|+|+|++++|+||+.|++|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56889999999999999999999999999999997
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=7.3e-07 Score=87.90 Aligned_cols=158 Identities=13% Similarity=0.233 Sum_probs=113.7
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCC
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
+.+ ++.+.+..|.+-++.+... |.|. -++.|.++.|...++++..|...|.|.+.|+..... .
T Consensus 225 gyh-fs~G~sqqv~L~nvetg~~--------qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq-----G-- 287 (425)
T KOG2695|consen 225 GYH-FSVGLSQQVLLTNVETGHQ--------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ-----G-- 287 (425)
T ss_pred eee-ecccccceeEEEEeecccc--------cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-----C--
Confidence 334 4556666777776654322 2333 677899999999899999999999999999986520 0
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLS 370 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s 370 (686)
. ..+.+.+ -|...|++|..-. ++ +|++
T Consensus 288 -~-------------------------------------------------~~~a~rl-yh~Ssvtslq~Lq~s~q~Lma 316 (425)
T KOG2695|consen 288 -N-------------------------------------------------GWCAQRL-YHDSSVTSLQILQFSQQKLMA 316 (425)
T ss_pred -C-------------------------------------------------CcceEEE-EcCcchhhhhhhccccceEee
Confidence 0 0122222 2888999998776 55 9999
Q ss_pred EECCCcEEEEECCCCee---eeEee-CCCCeE--EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcE
Q 005646 371 ASIDKTVRLWRVGNDHC---LRVFP-HSNYVT--CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV 439 (686)
Q Consensus 371 ~s~Dg~V~iWd~~~~~~---~~~~~-h~~~V~--~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V 439 (686)
.+++|+|++||++.-+| +..+. |-+.-. -+..++ ....+++++.|...|||.++.++++..+.....+
T Consensus 317 S~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~ 390 (425)
T KOG2695|consen 317 SDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSA 390 (425)
T ss_pred ccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCcc
Confidence 99999999999998887 55554 433222 233445 5678888999999999999999998877665543
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.46 E-value=0.00023 Score=71.50 Aligned_cols=156 Identities=13% Similarity=0.114 Sum_probs=100.2
Q ss_pred eeEEEee-CCCEEEEEECCCcEEEEECCCCeeeeEee------CCCCeEEEEEeecCCCEEEEEEcC--------CcEEE
Q 005646 357 ILDLSWS-KNNYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSID--------GKVRI 421 (686)
Q Consensus 357 V~~l~~s-~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs~D--------g~V~i 421 (686)
...+++. +++.|+.+...+ +.++|..+++....+. .....+.+++.| ++++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 5677777 677777777655 4555999886554443 235688999999 89988776644 56777
Q ss_pred EecCCCcEEEEeccCCcEEEEEEccCCCEEE-EEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI-VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 422 wd~~~~~~~~~~~~~~~V~~v~~spdg~~l~-~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
++.. +++......-...+.++|+||++.|+ +-+..+.|..|++............+.. ........-++++.. ++.
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~pDG~~vD~-~G~ 196 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGGPGYPDGLAVDS-DGN 196 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEEBT-TS-
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCCCcCCCcceEcC-CCC
Confidence 8877 66555555556678999999999776 5567888999998643321111111111 111113477888888 666
Q ss_pred eEEEEeCCCcEEEEeCC
Q 005646 501 KVMVSCADSQVRILQGP 517 (686)
Q Consensus 501 ~l~~~s~D~~I~iwd~~ 517 (686)
+.++....+.|.+++..
T Consensus 197 l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEETTTEEEEEETT
T ss_pred EEEEEcCCCEEEEECCC
Confidence 66666677777777643
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=4.3e-05 Score=82.54 Aligned_cols=178 Identities=8% Similarity=0.053 Sum_probs=116.8
Q ss_pred CeeEEEeeCCC-E-EEEEECC---CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEE-EEcC--CcEEEEecCCC
Q 005646 356 EILDLSWSKNN-Y-LLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSID--GKVRIWAVLSC 427 (686)
Q Consensus 356 ~V~~l~~s~~~-~-L~s~s~D---g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~s-gs~D--g~V~iwd~~~~ 427 (686)
.+....|+|+| . ++..+.+ ..|.++|+.+++........+.+....|+| |++.++. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 77889999999 4 5544443 568999999887766655666777889999 8876654 4434 46888898888
Q ss_pred cEEEEeccCCcEEEEEEccCCCEEEEEec-CC--cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 428 ~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
....+...........|+|||+.|+..+. .| .|+++|+.++..... ...+ . ....|+| +++.++.
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl---t~~g------~--~~~~~SP-DG~~Ia~ 335 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV---VFHG------K--NNSSVST-YKNYIVY 335 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC---ccCC------C--cCceECC-CCCEEEE
Confidence 77666555544456789999998877654 23 578888877664321 1111 1 1248999 6666655
Q ss_pred EeCC---------CcEEEEeCCc-------------ceeEcCCCCEEEEEeCC-C--cEEEEeCCCC
Q 005646 505 SCAD---------SQVRILQGPN-------------VIGKYKDGKHIVSAGED-S--NVYMWNCIGH 546 (686)
Q Consensus 505 ~s~D---------~~I~iwd~~~-------------~~~~~~dg~~l~sgs~D-g--~V~iWd~~~~ 546 (686)
.+.. ..|.+.|..+ ...|+|||+.|+-.+.+ + .+.+.+++..
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 5543 3577777432 25688899887766543 2 3555666553
No 298
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.43 E-value=4.1e-05 Score=78.71 Aligned_cols=137 Identities=20% Similarity=0.329 Sum_probs=103.2
Q ss_pred eeeecCCCccceeeccc-eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAMFCSKVQ-RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~-~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
.++..+++.++.|..|| .+-|++.+.... ..+...-+.|.+++.+++|++++.+.....|-+.|+.++...
T Consensus 365 ~r~~~~~e~~vigt~dgD~l~iyd~~~~e~--------kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 365 RRIQVDPEGDVIGTNDGDKLGIYDKDGGEV--------KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred EEEccCCcceEEeccCCceEEEEecCCceE--------EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 34556777889999998 899998876542 234456788999999999999999988888888898887621
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
. .-+...+-|+...|||+
T Consensus 437 ~--------------------------------------------------------------idkS~~~lItdf~~~~n 454 (668)
T COG4946 437 L--------------------------------------------------------------IDKSEYGLITDFDWHPN 454 (668)
T ss_pred E--------------------------------------------------------------ecccccceeEEEEEcCC
Confidence 1 11234568999999999
Q ss_pred C-EEEEEECC----CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE
Q 005646 366 N-YLLSASID----KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 366 ~-~L~s~s~D----g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs 414 (686)
+ ++|-+--+ ..|+++|+..++....-.....=.+-+|.| ++++|.--+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC-CCcEEEEEe
Confidence 9 77765544 468999999998877766666666778888 888776554
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.41 E-value=0.00017 Score=70.39 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=46.0
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.+|+ +++.-.|..|.|...+..-.... .+.+.-+.-.-.-+-++||||+.+||.+...|+|+++|+....
T Consensus 7 ~~Gk-~lAi~qd~~iEiRsa~Ddf~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 7 SDGK-LLAILQDQCIEIRSAKDDFSSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred CCCc-EEEEEeccEEEEEeccCCchhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 3444 44456678888887655322111 1122223333456789999999999999999999999986533
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=1.2e-06 Score=86.43 Aligned_cols=140 Identities=10% Similarity=0.201 Sum_probs=103.7
Q ss_pred CCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC-----eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 353 HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~-----~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
..++|.++.|...+ +++.|...|.|...|++++ .+...+-|...|+|++.-..++.+|++.+.+|+|.+||++-
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 56789999999866 9999999999999999865 57778889999999988776788999999999999999986
Q ss_pred CcE---E-EEeccCCcEE--EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 427 CHV---V-DWVDIRQIVT--AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 427 ~~~---~-~~~~~~~~V~--~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
-++ + ...+|-..-. -+-+.+....+++++.|-..|||.++.+++....+. ........+..++|..
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf----~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF----PYSASEVDIPSVAFDS 402 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC----CCccccccccceehhc
Confidence 655 3 4444432211 123345566788899999999999999887653322 1222333455566554
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.31 E-value=0.00027 Score=71.05 Aligned_cols=226 Identities=15% Similarity=0.211 Sum_probs=133.7
Q ss_pred eeec-CCCccceeeccce-EEEEEcCCcccc-ccccccCceecccCCceEEEEEeeCCCEEEEEe-----CCCcEEEEEe
Q 005646 208 RVRL-NEEDAMFCSKVQR-VKVYHCKKRSKE-LSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-----DDGVVRLWQV 279 (686)
Q Consensus 208 ~~s~-~~~~l~~g~~d~~-v~vw~~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-----~Dg~I~vWd~ 279 (686)
..++ .+..++.+...|+ ..+||....... .......+.|.||- .||+||++|+|.= ..|.|-|||.
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 3344 3345556666664 566777554321 22223455677774 7999999999863 3489999999
Q ss_pred e-cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 280 V-EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 280 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
. +-+.+.++......+.-+.+.++.. .++. -.+.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~-------------tLvV------------------------------ANGG-- 119 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGE-------------TLVV------------------------------ANGG-- 119 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCC-------------EEEE------------------------------EcCC--
Confidence 8 5566666655444333222222110 0000 0011
Q ss_pred EEEeeCCC---EEEEEECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcCCc-------EEEEe
Q 005646 359 DLSWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGK-------VRIWA 423 (686)
Q Consensus 359 ~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~-------V~iwd 423 (686)
|.-+|+. .|=...++-.+.+-|..+++.+.... |...|..+++.+ ++..++..-..|. |-+++
T Consensus 120 -I~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~ 197 (305)
T PF07433_consen 120 -IETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHR 197 (305)
T ss_pred -CccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEc
Confidence 1112322 44455667778888888888876632 778899999998 7766555544332 33333
Q ss_pred cCCC-cEE-----EEeccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 424 VLSC-HVV-----DWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 424 ~~~~-~~~-----~~~~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.... +.+ .+......+-+|+++++|..+++.+- .|.+.+||..++.+..... ...+.+++-.+
T Consensus 198 ~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----------l~D~cGva~~~ 267 (305)
T PF07433_consen 198 RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----------LPDACGVAPTD 267 (305)
T ss_pred CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----------cCceeeeeecC
Confidence 3221 111 13345678999999999998876655 6679999999988754322 23466666665
No 302
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2.8e-05 Score=81.40 Aligned_cols=134 Identities=16% Similarity=0.282 Sum_probs=98.5
Q ss_pred eEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-----------CCcEEEEecC
Q 005646 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-----------DGKVRIWAVL 425 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-----------Dg~V~iwd~~ 425 (686)
+-+.|||.| +|+|-..- -|.+|--.+-..++.|.|++ |.-+.|+| +.+||+|-+. ...++|||++
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 568999999 88777655 48899877777888888875 78899999 9999999764 1579999999
Q ss_pred CCcEEEEecc---CCc-EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCe
Q 005646 426 SCHVVDWVDI---RQI-VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 426 ~~~~~~~~~~---~~~-V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
+|.+...+.. ... -.-+.||.|++++|.-.. ..|.||+...-.+.-...+ ....|..+.|+| .+..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--------ki~gIr~FswsP-~~~l 360 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL--------KISGIRDFSWSP-TSNL 360 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc--------CCccccCcccCC-Ccce
Confidence 9987754432 111 234689999999998765 6799999876443322222 234588899999 5565
Q ss_pred EEE
Q 005646 502 VMV 504 (686)
Q Consensus 502 l~~ 504 (686)
|+-
T Consensus 361 lAY 363 (698)
T KOG2314|consen 361 LAY 363 (698)
T ss_pred EEE
Confidence 554
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.30 E-value=0.00071 Score=67.88 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=93.8
Q ss_pred CCCeeEEEeeCCC-EEEEEECC--------CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEE-EEEcCCcEEEEe
Q 005646 354 SGEILDLSWSKNN-YLLSASID--------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWA 423 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~D--------g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~-sgs~Dg~V~iwd 423 (686)
....+++++.++| +.++.... +.|..++.. ++.......-...+.|+|+| +++.|+ +-+..+.|..++
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~ 162 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFD 162 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC-cchheeecccccceeEEEe
Confidence 3467899999999 44544433 457777776 66555555667789999999 887665 566778899999
Q ss_pred cCCCc--EE---EEecc---CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 424 VLSCH--VV---DWVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 424 ~~~~~--~~---~~~~~---~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
+.... +. .+... ....-.+++..+|++.++....+.|.++|.. +++.....+ ....+++++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~--------p~~~~t~~~fg 233 (246)
T PF08450_consen 163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL--------PVPRPTNCAFG 233 (246)
T ss_dssp EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---------SSSSEEEEEEE
T ss_pred ccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC--------CCCCEEEEEEE
Confidence 86322 21 12222 2247889999999988888889999999987 554432221 12368999996
Q ss_pred CCCCCeEEEEe
Q 005646 496 PQDSSKVMVSC 506 (686)
Q Consensus 496 p~~~~~l~~~s 506 (686)
..+.+.|++++
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 43555555544
No 304
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.28 E-value=2.1e-06 Score=58.85 Aligned_cols=37 Identities=41% Similarity=0.809 Sum_probs=34.8
Q ss_pred CCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEE
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWR 381 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd 381 (686)
++++.+.+|.+.|.+|+|+|++ +|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678899999999999999998 999999999999997
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.25 E-value=1.6e-05 Score=87.85 Aligned_cols=182 Identities=15% Similarity=0.202 Sum_probs=136.1
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
.+++.++.|+-...+..+|..+... .+...-..+.|+-|+. ++++|.+|...|+|.+-|..+.+
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e-------~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~------- 208 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKE-------TRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE------- 208 (1118)
T ss_pred cCCcceeecchhhheeeeeccccee-------eeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-------
Confidence 3566777787777788887665432 1112112333555554 68899999999999999987754
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s 370 (686)
.++++.+|++.|.++.... +.|++
T Consensus 209 -------------------------------------------------------~iht~~aHs~siSDfDv~G-NlLit 232 (1118)
T KOG1275|consen 209 -------------------------------------------------------TIHTFDAHSGSISDFDVQG-NLLIT 232 (1118)
T ss_pred -------------------------------------------------------eeeeeeccccceeeeeccC-CeEEE
Confidence 5778889999999987642 37888
Q ss_pred EEC---------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe---cCCCc--EEEEeccC
Q 005646 371 ASI---------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA---VLSCH--VVDWVDIR 436 (686)
Q Consensus 371 ~s~---------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd---~~~~~--~~~~~~~~ 436 (686)
++. |..|+|||++..+.+.-++......-+.|+|.-...++.++..|...+-| +.+.. +.......
T Consensus 233 CG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~ 312 (1118)
T KOG1275|consen 233 CGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG 312 (1118)
T ss_pred eecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC
Confidence 764 66799999999988887774333477889997678899999999999999 43332 22333345
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEe
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYN 464 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd 464 (686)
..+.+++++++|+.++.|..+|.|.+|-
T Consensus 313 s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 313 SGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CcceeEEecCCCceEEEecccCcEeeec
Confidence 5699999999999999999999999997
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.25 E-value=0.00022 Score=76.23 Aligned_cols=112 Identities=19% Similarity=0.376 Sum_probs=84.1
Q ss_pred CeeEEEeeCCC--EEEEE----ECCCc----EEEEECCCCee--e--eEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEE
Q 005646 356 EILDLSWSKNN--YLLSA----SIDKT----VRLWRVGNDHC--L--RVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421 (686)
Q Consensus 356 ~V~~l~~s~~~--~L~s~----s~Dg~----V~iWd~~~~~~--~--~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~i 421 (686)
...++.|+... .+.+. +.+|. -.+|++...+. + ..+..+..|.|++++| +...|+.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 44667776543 44433 33443 34677665532 2 2344889999999999 9999999999999999
Q ss_pred EecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 422 wd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
||...+... .....-.++.++|+|+|..+++|+..|.+.+||+.-+.
T Consensus 286 yD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999877443 34556678999999999999999999999999986443
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.24 E-value=0.00025 Score=76.64 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=103.3
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEE--EEeec-CCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc---
Q 005646 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV--HFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI--- 438 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v--~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~--- 438 (686)
++.++.+..++.|.-+|..+|+.+..+....+...+ .-+|. .+..++.++.+|.+..+|..+++.+-......+
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 456777788899999999999998887633221100 01110 234577778899999999999886532221110
Q ss_pred -----EEEEEEcc--CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 439 -----VTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 439 -----V~~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
...+..+| .+..+++++.+|.+..+|..+++....... .....+.. .+..+++++.++.+
T Consensus 240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----------~~~~~~~~---~~~~vy~~~~~g~l 306 (394)
T PRK11138 240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----------GSVNDFAV---DGGRIYLVDQNDRV 306 (394)
T ss_pred cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----------CCccCcEE---ECCEEEEEcCCCeE
Confidence 11112233 345677778899999999998876543221 00111122 23566666777777
Q ss_pred EEEeCCcce-eE-----------cC--CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 512 RILQGPNVI-GK-----------YK--DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 512 ~iwd~~~~~-~~-----------~~--dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+|..+.. .| .| .+.+|+.++.||.|++.|..+++
T Consensus 307 ~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 307 YALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred EEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 777765431 11 11 35567778888888888887765
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.19 E-value=0.00051 Score=78.80 Aligned_cols=307 Identities=11% Similarity=0.095 Sum_probs=176.4
Q ss_pred cCcceeee--cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee
Q 005646 203 QGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 203 ~~~~~~~s--~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~ 280 (686)
+.++.++. .+++.++.+...|.|.+-+......+.. ..-.+.|.+++||||++.++-...++++.+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--------GNVDNGISAASWSPDEELLALITGRQTLLFMT-K 138 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee--------eeccCceEEEeecCCCcEEEEEeCCcEEEEEe-c
Confidence 34565554 4567788889999998886554333222 12356899999999999999888877776533 3
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
+-..+.+...... ....+....+.|+......- ++.. .... +--...++......-| ..=..+
T Consensus 139 ~f~~i~E~~L~~d--------~~~~sk~v~VGwGrkeTqfr----gs~g-r~~~---~~~~~~ek~~~~~~~~-~~~~~I 201 (1265)
T KOG1920|consen 139 DFEPIAEKPLDAD--------DERKSKFVNVGWGRKETQFR----GSEG-RQAA---RQKIEKEKALEQIEQD-DHKTSI 201 (1265)
T ss_pred cccchhccccccc--------cccccccceecccccceeee----cchh-hhcc---cccccccccccchhhc-cCCceE
Confidence 3333322222100 00001111111111110000 0000 0000 0000000100101112 122468
Q ss_pred EeeCCC-EEEEEE----CC-CcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEE---cCCcEEEEecCCC---
Q 005646 361 SWSKNN-YLLSAS----ID-KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS---IDGKVRIWAVLSC--- 427 (686)
Q Consensus 361 ~~s~~~-~L~s~s----~D-g~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs---~Dg~V~iwd~~~~--- 427 (686)
.|-.|| ++++.. .+ +.|++||-+ +..-.+-. ..+.=.+++|-| .|..+++-. .|+.|.+|.-+.-
T Consensus 202 sWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 202 SWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred EEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 999999 666532 34 899999987 43222211 344557899999 888888864 3567888875432
Q ss_pred cEEEEeccC-CcEEEEEEccCCCEEEE---EecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 428 HVVDWVDIR-QIVTAVCYRPDGQGGIV---GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 428 ~~~~~~~~~-~~V~~v~~spdg~~l~~---gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
....-.... ..+..++|+.++..|++ ......|++|-+.+.+.-++..+..... .-+.|+|.....+.
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~--------~~~~W~p~~~~~L~ 351 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK--------ALLMWDPVTEKTLH 351 (1265)
T ss_pred ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc--------ccccccCCCceeEE
Confidence 222112222 33899999999999988 4445559999999888776665544431 22899997777888
Q ss_pred EEeCCCcEEEEeCCcceeEcCC--CCEEEEEeCCCcEEEEeCCCCC
Q 005646 504 VSCADSQVRILQGPNVIGKYKD--GKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 504 ~~s~D~~I~iwd~~~~~~~~~d--g~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+-..+|...++|..-...++|+ +...+..+ ..+.+.++.-..
T Consensus 352 v~~~sG~~~v~~~~~~t~~s~~d~S~~~VIDg--s~llvT~ls~~v 395 (1265)
T KOG1920|consen 352 VLRESGQRLVRDFAWTTDRSPNDGSTVYVIDG--SRLLVTPLSLAV 395 (1265)
T ss_pred EEecCCcEEEEEEEEeeeccCCCCceEEEEeC--CEEEEecchhhc
Confidence 8888999999888777777553 44444432 357777765543
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.17 E-value=0.00085 Score=72.47 Aligned_cols=252 Identities=10% Similarity=0.042 Sum_probs=144.1
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
.++.++.++.++.+..+|........... +. +.+.+--.- .+..++.+..++.|..+|..+|+.+-.....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~-----~~---~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTK-----VA---GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCccccc-----CC---CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 45667778888888888876544322211 11 112111111 1346667778899999999999865544321
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA 371 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~ 371 (686)
. +...+.+...++. . ++.++.+
T Consensus 190 ~-----------------------------------------------------~~~~~~~~~sP~v----~-~~~v~~~ 211 (394)
T PRK11138 190 V-----------------------------------------------------PSLTLRGESAPAT----A-FGGAIVG 211 (394)
T ss_pred C-----------------------------------------------------CcccccCCCCCEE----E-CCEEEEE
Confidence 0 0000111112221 1 2456667
Q ss_pred ECCCcEEEEECCCCeeeeEeeCCCC--------eEEEEEee-cCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFPHSNY--------VTCVHFNP-VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV 442 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~h~~~--------V~~v~fsp-~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v 442 (686)
+.++.+...|..+++.+..+....+ ...+.-+| ..++.++.++.+|.+..+|+.+++.+-...... ...+
T Consensus 212 ~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~ 290 (394)
T PRK11138 212 GDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-VNDF 290 (394)
T ss_pred cCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-ccCc
Confidence 7788888888888887665541110 11111122 134567778889999999999998763333222 1112
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee-
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG- 521 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~- 521 (686)
. .++..+++++.+|.+..+|..+++........ .. ....+.... +..|++++.||.|..+|..+...
T Consensus 291 ~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~------~~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 291 A--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-LH------RLLTAPVLY---NGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred E--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-CC------CcccCCEEE---CCEEEEEeCCCEEEEEECCCCCEE
Confidence 2 24667888889999999999988764422110 00 111112222 35777888888888888654311
Q ss_pred -----------EcC--CCCEEEEEeCCCcEEEEeC
Q 005646 522 -----------KYK--DGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 522 -----------~~~--dg~~l~sgs~Dg~V~iWd~ 543 (686)
-.| .+..|+.++.||.|+.+++
T Consensus 359 ~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 359 AQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 111 3457778888998888764
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=1.6e-06 Score=94.81 Aligned_cols=201 Identities=16% Similarity=0.234 Sum_probs=131.9
Q ss_pred ccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccc
Q 005646 237 LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKE 316 (686)
Q Consensus 237 ~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (686)
+++......|+.|...-+|++|+-+.++|+.|+..|.|+++++.+|......+.+......+.-+.+....++...++..
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 44455556788899999999999999999999999999999999998777766665544433322222222221111110
Q ss_pred cceeEEEeeccCCceEEEeCCcccccc--CCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe-e
Q 005646 317 KISILKSLRRTSESACVVFPPKVFRIL--EKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-P 392 (686)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~-~ 392 (686)
.. ..|+.. ..+.|.|. .-.++.|+..- .-+.|..-..+.|||+.++..+.++ .
T Consensus 1168 --------------ls-----aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1168 --------------LS-----ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred --------------hH-----HHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC
Confidence 00 111111 13444444 33578888765 3344455567899999999877763 2
Q ss_pred ----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 393 ----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 393 ----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
.+..=++..|+| ++.+++- ||. +||++..+.+..++.-..-..-.|+|.|..++..+ .|||+++-
T Consensus 1225 ~~~~~~y~~n~a~FsP-~D~LIln---dGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSP-CDTLILN---DGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTF 1293 (1516)
T ss_pred cchhhhhhccccccCC-CcceEee---Cce--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHH
Confidence 222337899999 7777653 664 79999887765444333334457999999999865 58999887
Q ss_pred eee
Q 005646 469 HLE 471 (686)
Q Consensus 469 ~~~ 471 (686)
++.
T Consensus 1294 ~lL 1296 (1516)
T KOG1832|consen 1294 KLL 1296 (1516)
T ss_pred HHH
Confidence 653
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.9e-05 Score=80.71 Aligned_cols=188 Identities=14% Similarity=0.151 Sum_probs=140.7
Q ss_pred cCCCCeeEEEeeCCCEEEEEECCCcEEEEECCC--C-eeeeEee-CCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCC
Q 005646 352 GHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN--D-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLS 426 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~--~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~ 426 (686)
-|.+.|+.+......++++++.||.++.|.-.. + ..+..+. |...|.+++.+- ++.++.|.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 388889988877777999999999999997543 2 2233333 888899999888 9999999887 99999999998
Q ss_pred CcEEEEeccCCcEEEEEEcc-CC---CEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCe
Q 005646 427 CHVVDWVDIRQIVTAVCYRP-DG---QGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~sp-dg---~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
-..+..+......-.++|.- .| ..++++ -.+|.+.|+|-....++. ....+-|..+|..+.+.| -+..
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~------~~fkklH~sPV~~i~y~q-a~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD------GYFKKLHFSPVKKIRYNQ-AGDS 158 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc------ceecccccCceEEEEeec-cccc
Confidence 77664444433333333322 22 134443 457899999976554332 112456788999999999 7778
Q ss_pred EEEEeCCCcEEEEeCC------------------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 502 VMVSCADSQVRILQGP------------------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 502 l~~~s~D~~I~iwd~~------------------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+++....|.|.-|.+. +.+.++|+|..+.+-+.|..|+++.+.+++
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 8888888999999753 236788999999999999999999999987
No 312
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.14 E-value=0.00014 Score=79.55 Aligned_cols=154 Identities=14% Similarity=0.013 Sum_probs=102.7
Q ss_pred eeCCC-EE-EEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-------------------------
Q 005646 362 WSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS------------------------- 414 (686)
Q Consensus 362 ~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs------------------------- 414 (686)
+.|+| .+ .+.-..+.+.+.|..+.+....+.-.+...-++++| ++.++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 34566 33 233345677888888877776666444556667777 666666554
Q ss_pred ---------------cCCcEEEEecCC-----CcEEEEeccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeee
Q 005646 415 ---------------IDGKVRIWAVLS-----CHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELD 473 (686)
Q Consensus 415 ---------------~Dg~V~iwd~~~-----~~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~ 473 (686)
.+++|.+.|.++ ..++..+........+.++|||+++++++. +++|.|+|+.+.+..+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 235688888887 466777778888899999999999887665 89999999987553221
Q ss_pred eeEE----eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 474 AEIC----VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 474 ~~~~----~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
..+. +..... -.......+|.+ ++..+.+-..|++|..|++..
T Consensus 359 ~~~~~~~~vvaeve-vGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAEPE-LGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEeec-cCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 1110 111000 123345677877 677888888999999999654
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=4.7e-05 Score=83.33 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=85.0
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeec----CCCEEEEEEcCCcEEEEecC---CCcEEEEec
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV----DDNYFISGSIDGKVRIWAVL---SCHVVDWVD 434 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~----~~~~l~sgs~Dg~V~iwd~~---~~~~~~~~~ 434 (686)
.-+| +++|||.||+|.|--+.+.+...++....++.+|+++|. ..+.|++|+.-| +.++.-+ ....+....
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 4456 999999999999999999998888888899999999992 257899999988 8777543 223334556
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
..++|.+++|. |+++|-++.+| |+|||+...+...
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT 193 (846)
T ss_pred CccceEEEEec--CcEEEEecCCC-cEEEeccccceee
Confidence 78899999995 66888886665 8999998876544
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=8.1e-05 Score=81.53 Aligned_cols=175 Identities=14% Similarity=0.248 Sum_probs=123.9
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
.+....+..++.|+..|.|.+.+...... ....|... ..+|.|++||+.||+|.|-.+-+.+...
T Consensus 43 s~~av~~~~~~~GtH~g~v~~~~~~~~~~---------~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 43 SCCAVHDKFFALGTHRGAVYLTTCQGNPK---------TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred HHHHhhcceeeeccccceEEEEecCCccc---------cccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 34456778999999999999998654321 11224433 5579999999999999999887766433
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC-
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN- 365 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~- 365 (686)
.+. -..++..++++|+
T Consensus 108 ~~d---------------------------------------------------------------f~rpiksial~Pd~ 124 (846)
T KOG2066|consen 108 QYD---------------------------------------------------------------FKRPIKSIALHPDF 124 (846)
T ss_pred eEe---------------------------------------------------------------cCCcceeEEeccch
Confidence 322 2357788888887
Q ss_pred -----CEEEEEECCCcEEEEECC---CCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 366 -----NYLLSASIDKTVRLWRVG---NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 366 -----~~L~s~s~Dg~V~iWd~~---~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
+++++|+.-| +.++.-+ ....+..-...++|.++.| .++++|-++.+| |++||+.+++.+.......
T Consensus 125 ~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 125 SRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred hhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCC
Confidence 2899999988 7777533 2222212226799999999 578999888776 8999999998876554322
Q ss_pred -------cEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 438 -------IVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 438 -------~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
-...+.|.++.+ |+.| ...+|+|..++
T Consensus 200 ~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 200 QSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred CCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 245678877654 4444 66789999887
No 315
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.10 E-value=0.0013 Score=65.38 Aligned_cols=184 Identities=15% Similarity=0.110 Sum_probs=117.2
Q ss_pred eCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcc
Q 005646 260 PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV 339 (686)
Q Consensus 260 pdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (686)
+++.++++++.++.|..||..+|+.+........
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---------------------------------------------- 67 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---------------------------------------------- 67 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----------------------------------------------
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----------------------------------------------
Confidence 3566788888999999999999986655543110
Q ss_pred ccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEe-eCC----CCeEEEEEeecCCCEEEEEE
Q 005646 340 FRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF-PHS----NYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 340 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~----~~V~~v~fsp~~~~~l~sgs 414 (686)
.... ....++.++.++.++.|..+|..+++.+... ... .......... .++.++.+.
T Consensus 68 -------------~~~~----~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 129 (238)
T PF13360_consen 68 -------------ISGA----PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGT 129 (238)
T ss_dssp -------------GGSG----EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEE
T ss_pred -------------ccce----eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEe
Confidence 0000 1233456677778889999999999999884 311 1223334444 578889999
Q ss_pred cCCcEEEEecCCCcEEEEeccCC-c----------EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 415 IDGKVRIWAVLSCHVVDWVDIRQ-I----------VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 415 ~Dg~V~iwd~~~~~~~~~~~~~~-~----------V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
.++.|..+|+.+++.+-...... . +..-....++ .+++++.+|.+.-+|+.+++... +...
T Consensus 130 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~~~----- 201 (238)
T PF13360_consen 130 SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SKPI----- 201 (238)
T ss_dssp TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EECS-----
T ss_pred ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--EecC-----
Confidence 89999999999999874443322 1 1122222344 77777788864444999988442 1111
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~ 520 (686)
..+..+ ... .+..|++++.++.|..||..+..
T Consensus 202 ---~~~~~~-~~~-~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 202 ---SGIYSL-PSV-DGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ---S-ECEC-EEC-CCTEEEEEETTTEEEEEETTTTE
T ss_pred ---CCccCC-cee-eCCEEEEEeCCCEEEEEECCCCC
Confidence 112221 234 55777777799999999988643
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.07 E-value=6.4e-05 Score=83.19 Aligned_cols=141 Identities=15% Similarity=0.208 Sum_probs=106.1
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEc---------CCcEEEEecCCCcEEEEeccC
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI---------DGKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~---------Dg~V~iwd~~~~~~~~~~~~~ 436 (686)
.|.+|...|+|.+-|..+.+.++++. |.+.|..+.. .|+.|++++. |.-|++||++..+.+.-+...
T Consensus 189 ~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~ 265 (1118)
T KOG1275|consen 189 NLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP 265 (1118)
T ss_pred EEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc
Confidence 89999999999999999999999998 9999988876 6899999985 567899999998877666655
Q ss_pred CcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 437 QIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 437 ~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
....-+.|+|. ...+++.+..|.+.+-|..+-.-....... ...-...+.++.+++
T Consensus 266 ~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~----v~p~~s~i~~fDiSs------------------- 322 (1118)
T KOG1275|consen 266 YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM----VNPNGSGISAFDISS------------------- 322 (1118)
T ss_pred cCchhhhhcccccceEEEEecccceeeccccccCCCccceeE----EccCCCcceeEEecC-------------------
Confidence 55567888884 457888899999999994321111000000 011123377888887
Q ss_pred CCcceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 516 GPNVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 516 ~~~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
+|+.|+-|..+|.|.+|.
T Consensus 323 ---------n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 323 ---------NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ---------CCceEEEecccCcEeeec
Confidence 788888888888888887
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00025 Score=71.86 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=73.1
Q ss_pred CeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 346 PLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
+..-+.+|...|.+|+|+|.. +|..++.+.+|+|.|+++..++..+.-...+++++|.-.+.++++.|-..|.|.|||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence 344566889999999999976 788999999999999999999999986699999999987788999999999999999
Q ss_pred cCCC
Q 005646 424 VLSC 427 (686)
Q Consensus 424 ~~~~ 427 (686)
++..
T Consensus 265 ~R~~ 268 (463)
T KOG1645|consen 265 MRQP 268 (463)
T ss_pred ccCC
Confidence 9864
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.97 E-value=0.0032 Score=63.42 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=98.9
Q ss_pred EEEEEee-CCCEEEEEeCCC-cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 254 LTMKFSP-DGQYLASAGDDG-VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 254 ~~l~fsp-dg~~Lasgs~Dg-~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
..++.+| .+..++.+-.-| ...+||..+++....+..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a----------------------------------------- 46 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA----------------------------------------- 46 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------------------------------------
Confidence 4567777 455666665554 467899988886554432
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC-----CCcEEEEECC-CCeeeeEee-CCCCeEEEEEe
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-----DKTVRLWRVG-NDHCLRVFP-HSNYVTCVHFN 403 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-----Dg~V~iWd~~-~~~~~~~~~-h~~~V~~v~fs 403 (686)
.+-+.|.|| -.||++| +|++.=. .|.|-|||.. +-+.+..|. |.-.-..+.+.
T Consensus 47 -------------~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~ 107 (305)
T PF07433_consen 47 -------------PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM 107 (305)
T ss_pred -------------CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence 234567777 4689999 7776543 4789999999 667777777 66667778899
Q ss_pred ecCCCEEEEEE------------------cCCcEEEEecCCCcEEEEe-----ccCCcEEEEEEccCCCEEEEEecC
Q 005646 404 PVDDNYFISGS------------------IDGKVRIWAVLSCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSMM 457 (686)
Q Consensus 404 p~~~~~l~sgs------------------~Dg~V~iwd~~~~~~~~~~-----~~~~~V~~v~~spdg~~l~~gs~d 457 (686)
| ++..|+.+. .+-.|.+.|..+++++... .++-.|..+++.++|..++..-..
T Consensus 108 p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 108 P-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ 183 (305)
T ss_pred C-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC
Confidence 9 887777763 2345666677888877542 255679999999998766554333
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0028 Score=70.42 Aligned_cols=187 Identities=12% Similarity=0.126 Sum_probs=116.1
Q ss_pred EEeccCCCC-eeEEEeeCCC-EEEEEECCC-----cEEEEECCC------Ceee---eEee-----CCCCeEEEEEeecC
Q 005646 348 HEFHGHSGE-ILDLSWSKNN-YLLSASIDK-----TVRLWRVGN------DHCL---RVFP-----HSNYVTCVHFNPVD 406 (686)
Q Consensus 348 ~~l~~h~~~-V~~l~~s~~~-~L~s~s~Dg-----~V~iWd~~~------~~~~---~~~~-----h~~~V~~v~fsp~~ 406 (686)
+.++++... |..+....+. +|++.+.|+ .|+||+++. .+|+ +.+. ...++.+++.+. +
T Consensus 58 ~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~ 136 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-D 136 (933)
T ss_pred ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-c
Confidence 455556666 4444333333 888887765 489999863 2455 3333 346788999998 8
Q ss_pred CCEEEEEEcCCcEEEEecC---C--CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 407 DNYFISGSIDGKVRIWAVL---S--CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~iwd~~---~--~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
-+.+++|-.+|.|..+.-. . .+.......+++||.+++..+++.++.......|.+|.+.+.. ... . .
T Consensus 137 l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~---~---~ 209 (933)
T KOG2114|consen 137 LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSL---K---V 209 (933)
T ss_pred ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cce---e---e
Confidence 8999999999999998432 1 1223344567899999999999984444456789999998544 111 1 1
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
...++..+.|-.|++... =+.++.+.-+.+|+... +.+|--.++..+....-|.+.+.-.+
T Consensus 210 ld~~G~~lnCss~~~~t~--qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~ 273 (933)
T KOG2114|consen 210 LDNNGISLNCSSFSDGTY--QFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTD 273 (933)
T ss_pred eccCCccceeeecCCCCc--cEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEcc
Confidence 234567788888887322 23334455677777653 23333355555555443444444333
No 320
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.90 E-value=0.0009 Score=72.29 Aligned_cols=171 Identities=16% Similarity=0.205 Sum_probs=89.2
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~ 434 (686)
+.-....|.+.+.+|+-....+|.|+.--.....+.+.....+..|-. |.+|+..+. +.|.+||+.+++++..+.
T Consensus 69 G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i~~i~ 143 (443)
T PF04053_consen 69 GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLIRRID 143 (443)
T ss_dssp EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEES
T ss_pred CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEhhHcceeeEEe
Confidence 344678899977888888889999974333333334544444555543 666666654 489999999999998888
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC------------eeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN------------HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
... |..|.|+++|++++..+. ..+.|++.... ......++ ..+|.+..|.. + .+
T Consensus 144 v~~-vk~V~Ws~~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---------~~~IkSg~W~~-d--~f 209 (443)
T PF04053_consen 144 VSA-VKYVIWSDDGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEI---------SERIKSGCWVE-D--CF 209 (443)
T ss_dssp S-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----------S--SEEEEET-T--EE
T ss_pred cCC-CcEEEEECCCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEe---------cceeEEEEEEc-C--EE
Confidence 765 899999999999999865 47888776543 22211111 14577888876 2 33
Q ss_pred EEEeCCCcEEEEe-CCc-----------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 503 MVSCADSQVRILQ-GPN-----------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 503 ~~~s~D~~I~iwd-~~~-----------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+-+... +|+-+= +.. .+...+..+.|.....|+.|..+.++.
T Consensus 210 iYtT~~-~lkYl~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 210 IYTTSN-HLKYLVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEE-TT-EEEEEETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEcCC-eEEEEEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 333333 444332 111 123334445666666666666666544
No 321
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.88 E-value=0.011 Score=63.02 Aligned_cols=239 Identities=15% Similarity=0.207 Sum_probs=124.0
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee-eeccCCCCCcceEEee-cCCCCceeeeeccccceeEEEeeccCC
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT-EVDIPEIDPSCIYFTV-NHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
.|+.|.|.++..-||.|-..|.|.||.+...+... .......+.....+.. +....+..+.-... . .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~----------~-~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAP----------P-S 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG------------T-T
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCC----------c-c
Confidence 58999999998889999999999999987765322 0000000000000000 00000000000000 0 0
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee---------CCCCeEEE
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---------HSNYVTCV 400 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~---------h~~~V~~v 400 (686)
.+-.-.|...++...++|++++.|.-|+++.|..+|.+.|.|++....+..-. ....|+++
T Consensus 72 ----------~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 72 ----------LKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp -----------SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred ----------cccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 00000355566667899999999988899999999999999998887776532 34579999
Q ss_pred EEeec----CC---CEEEEEEcCCcEEEEecCC---Cc-E---EEEe-ccCCcEEEEE-EccC-C---------------
Q 005646 401 HFNPV----DD---NYFISGSIDGKVRIWAVLS---CH-V---VDWV-DIRQIVTAVC-YRPD-G--------------- 448 (686)
Q Consensus 401 ~fsp~----~~---~~l~sgs~Dg~V~iwd~~~---~~-~---~~~~-~~~~~V~~v~-~spd-g--------------- 448 (686)
.|.-. |+ -.+++|...|.+.+|.+.- +. . .... .+..+|..+. ++.+ |
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred EEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence 99741 22 4788999999999998751 11 1 1222 4455655554 3221 1
Q ss_pred ----CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe----CCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 449 ----QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL----PQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 449 ----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs----p~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
..+++...+..++++...+.+...+. . .......++.+- ...+..|++-..+|.|+++.++..
T Consensus 222 g~~i~g~vVvvSe~~irv~~~~~~k~~~K~-------~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 222 GISIPGYVVVVSESDIRVFKPPKSKGAHKS-------F-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp T----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred CCCcCcEEEEEcccceEEEeCCCCccccee-------e-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 23455556788999998876643211 1 011112233442 124567788889999999987753
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.87 E-value=8.7e-06 Score=86.66 Aligned_cols=239 Identities=15% Similarity=0.256 Sum_probs=142.9
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEe----CCCcEEEEEeecCeeeeee
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAG----DDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs----~Dg~I~vWd~~~~~~~~~~ 288 (686)
..++.|..+|.|.+-..+.....- .....+|....++++|++ |.+.||.|- .|..+.|||+.++-.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs-----~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt---- 141 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSS-----AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT---- 141 (783)
T ss_pred hhhhhccccCceEEeecCCccccc-----ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccC----
Confidence 367889999999998876544321 123456889999999998 667777762 356799999977531
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec-cCCCCeeEEEeeCCC-
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN- 366 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~- 366 (686)
.+. .-..|. +.......++|-.+.
T Consensus 142 -vPk-----------------------------------------------------e~~~fs~~~l~gqns~cwlrd~k 167 (783)
T KOG1008|consen 142 -VPK-----------------------------------------------------ESPLFSSSTLDGQNSVCWLRDTK 167 (783)
T ss_pred -CCc-----------------------------------------------------cccccccccccCccccccccCcc
Confidence 000 000011 122344578888666
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe-cCCCc-EEEE-----eccCCcE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA-VLSCH-VVDW-----VDIRQIV 439 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd-~~~~~-~~~~-----~~~~~~V 439 (686)
++++|...+.++++|++........-.+..|..+...|-.++|+++-. ||.|.+|| .++-+ .+.. ......+
T Consensus 168 lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l 246 (783)
T KOG1008|consen 168 LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQL 246 (783)
T ss_pred hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccce
Confidence 777888888999999974322222224556777888887788888766 99999999 33322 1111 1223358
Q ss_pred EEEEEccC--CCEEEEEecCCcEEEEeCCCCeeee--ee--eEEeec----cccCCCCCeEEEEEeCCC-CCeEEEEeCC
Q 005646 440 TAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLEL--DA--EICVHS----KKKAPCKRITGFQFLPQD-SSKVMVSCAD 508 (686)
Q Consensus 440 ~~v~~spd--g~~l~~gs~dg~i~iwd~~~~~~~~--~~--~~~~~~----~~~~~~~~I~~l~fsp~~-~~~l~~~s~D 508 (686)
..++|.|. |...+..-..++|++||+....-.. .. .+.... ........|..+.|++.. -...+++...
T Consensus 247 ~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~n 326 (783)
T KOG1008|consen 247 FALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVIN 326 (783)
T ss_pred eeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeecc
Confidence 99999994 4344444456889999985321100 00 000111 112224567788888754 2344444444
Q ss_pred CcEEEEeC
Q 005646 509 SQVRILQG 516 (686)
Q Consensus 509 ~~I~iwd~ 516 (686)
-++.-+++
T Consensus 327 l~~~Df~V 334 (783)
T KOG1008|consen 327 LQPKDFSV 334 (783)
T ss_pred CChhhccc
Confidence 44444443
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00048 Score=69.88 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=37.5
Q ss_pred CceecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeee
Q 005646 243 GQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~ 288 (686)
.+-+.+|...|..|+|||..+ +|..++.+.+|+|.|+.+......+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy 232 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY 232 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe
Confidence 345678889999999999776 7888999999999999887644433
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.78 E-value=0.0039 Score=71.85 Aligned_cols=199 Identities=16% Similarity=0.181 Sum_probs=126.2
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
....|.++.|..+++-|+.+..+|.|.+-|..+...
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------------------------- 102 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------------------------- 102 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce--------------------------------------------
Confidence 446899999999999999999999999987766441
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEEC----CCCeee---------------
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV----GNDHCL--------------- 388 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~----~~~~~~--------------- 388 (686)
.....-...|.+++|+||. .++..+..+++.+-.- -..+.+
T Consensus 103 -------------------eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGw 163 (1265)
T KOG1920|consen 103 -------------------EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGW 163 (1265)
T ss_pred -------------------eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecc
Confidence 1111234678899999988 7777777677655432 111111
Q ss_pred ----eEee-------------C---------CCCeEEEEEeecCCCEEEEEE----cC-CcEEEEecCCCcEEEEe-ccC
Q 005646 389 ----RVFP-------------H---------SNYVTCVHFNPVDDNYFISGS----ID-GKVRIWAVLSCHVVDWV-DIR 436 (686)
Q Consensus 389 ----~~~~-------------h---------~~~V~~v~fsp~~~~~l~sgs----~D-g~V~iwd~~~~~~~~~~-~~~ 436 (686)
..|. + .+.=++|.|-- |+.+|++.. .+ .+|++||-. +.+-... ...
T Consensus 164 GrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~ 241 (1265)
T KOG1920|consen 164 GRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVE 241 (1265)
T ss_pred cccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCccc
Confidence 0010 0 11224588876 888998843 23 789999987 4433221 223
Q ss_pred CcEEEEEEccCCCEEEEE---ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE---EeCCCc
Q 005646 437 QIVTAVCYRPDGQGGIVG---SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV---SCADSQ 510 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~g---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~---~s~D~~ 510 (686)
..-.+++|-|.|..+++- +.|+.|.+|.-++-.-. . +.+ ........+..++|+. ++..|++ ......
T Consensus 242 ~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg-~--f~l--~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~ 315 (1265)
T KOG1920|consen 242 GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG-E--FVL--PFPLDEKEVEELAWNS-NSDILAVVTSNLENSL 315 (1265)
T ss_pred ccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc-c--ccc--CCcccccchheeeecC-CCCceeeeecccccce
Confidence 345679999999988874 34667999986542210 0 000 0111223489999999 7788877 445566
Q ss_pred EEEEeCCc
Q 005646 511 VRILQGPN 518 (686)
Q Consensus 511 I~iwd~~~ 518 (686)
|++|...+
T Consensus 316 v~lwt~~N 323 (1265)
T KOG1920|consen 316 VQLWTTGN 323 (1265)
T ss_pred EEEEEecC
Confidence 99998654
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.77 E-value=0.0047 Score=59.44 Aligned_cols=105 Identities=12% Similarity=0.028 Sum_probs=85.1
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcE-EEEEEc
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV-TAVCYR 445 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V-~~v~~s 445 (686)
+++.||..+.+.--|..+|+.+..-.....+.+-+.- -+++++.|...|.+++.+..++.....+..-+.| ......
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 8889999999999999999998877777777776665 4788999999999999999999665433333332 334567
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
+++..+.+|+.|++.+..|..+.....+
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEe
Confidence 8999999999999999999988777654
No 326
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=2e-05 Score=86.55 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=97.9
Q ss_pred CCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCC--cEE
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDG--KVR 420 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg--~V~ 420 (686)
++...|+.|...-+|++|+.+. +|+.|+..|.|+++++.+|....... |+.+|+-+.-+- ++..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 4566788899999999999877 99999999999999999999988888 999999999887 887777665433 467
Q ss_pred EEecCC-CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 421 IWAVLS-CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 421 iwd~~~-~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
+|++.. +.....+ ..-.++.|+..-+.-+.|+......+||+.++....
T Consensus 1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ 1220 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ 1220 (1516)
T ss_pred HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHH
Confidence 899865 2222222 233578888877777778888889999999887543
No 327
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.75 E-value=0.0043 Score=60.77 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=92.7
Q ss_pred EEEeeCCCEEEEEECCCcEEEEECCCC--eeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 359 DLSWSKNNYLLSASIDKTVRLWRVGND--HCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 359 ~l~~s~~~~L~s~s~Dg~V~iWd~~~~--~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
.++.+.+|.|++.-.|..|.|-..+.. .++.... ..-.-..++|+| |+.+||.+...|+|++||+....+...
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEc
Confidence 356677887777778888888765532 2222222 334568899999 999999999999999999987554422
Q ss_pred e-------ccCCcEEEEEEccCC------CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 433 V-------DIRQIVTAVCYRPDG------QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 433 ~-------~~~~~V~~v~~spdg------~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
. .....|..+.|.+-. ..|++-...|.++=|-+..+..+...+.............|+++.++| ..
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h 159 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KH 159 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CC
Confidence 2 223456667675521 246666788888888874332111111111111222346799999999 55
Q ss_pred CeEEEEeC
Q 005646 500 SKVMVSCA 507 (686)
Q Consensus 500 ~~l~~~s~ 507 (686)
++|++|+.
T Consensus 160 ~LLlVgG~ 167 (282)
T PF15492_consen 160 RLLLVGGC 167 (282)
T ss_pred CEEEEecc
Confidence 66666654
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=0.017 Score=55.73 Aligned_cols=69 Identities=9% Similarity=-0.005 Sum_probs=47.2
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEE-EEEeeCCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILT-MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~ 288 (686)
-+++++.|...|.+++-+.+...+-. .+..- +.|.+ -...+++.++..|+.|++.+.-|..+..++.+.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w-------~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIW-------NFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhhee-------eeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 46778999999999998877654311 11111 12222 223568899999999999999999887765543
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00063 Score=74.80 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=59.0
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+.+++|+|.. .|+.|=.-|.+.+|...+.+.-.... |+.+|..+.|+| +|+.++++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 4569999999 88888888999999988776655444 999999999999 99999999999999999764
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.63 E-value=0.0074 Score=59.85 Aligned_cols=166 Identities=13% Similarity=0.181 Sum_probs=96.6
Q ss_pred EEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 348 HEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
..+.+-...+..|+|+|+. +++.....+.|...+. .|+.++.+. --+..-.|++.. ++.++++--.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence 3455666789999999975 5555666778887886 578888877 336678888875 565555554589999999
Q ss_pred cCCC--c--E--EEEe------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC--C-eeeeeeeEEeeccccCCCCC
Q 005646 424 VLSC--H--V--VDWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD--N-HLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 424 ~~~~--~--~--~~~~------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~--~-~~~~~~~~~~~~~~~~~~~~ 488 (686)
+... . . .... .....+-.++|+|.++.|+++-...-..+|.+.. . ....................
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 8432 1 1 1111 1345689999999988888887777777777754 1 11111100000112234456
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 489 ITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+.++.++|..+.+++.......|.++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 899999997777888877777777776
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0094 Score=66.41 Aligned_cols=208 Identities=12% Similarity=0.143 Sum_probs=131.8
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCc-eEEEEEeeCCCEEEEEeCCCc-----EEEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGS-ILTMKFSPDGQYLASAGDDGV-----VRLWQ 278 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~-----I~vWd 278 (686)
.+.+++..+..++.|+.+|.|.+.+-.-. ..+.+++|... |..+.......+|++.++|+. |+||+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~--------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQ--------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccce--------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEec
Confidence 66778889999999999999988853221 12457778777 444444444478999888754 99999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
++..+.- ..+.|+... .+++ ..+.....++.
T Consensus 99 lek~~~n-------~sP~c~~~~-------------------------------ri~~-----------~~np~~~~p~s 129 (933)
T KOG2114|consen 99 LEKVDKN-------NSPQCLYEH-------------------------------RIFT-----------IKNPTNPSPAS 129 (933)
T ss_pred ccccCCC-------CCcceeeee-------------------------------eeec-----------cCCCCCCCcce
Confidence 8754310 001111000 0000 00112356778
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECC--CC-eeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-EEE
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVG--ND-HCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVD 431 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~--~~-~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-~~~ 431 (686)
+++.+.+- .++.|-.+|.|..+.-+ .. .....+. ...+||.+++.. ++..++-...-..|.+|.+.... .+.
T Consensus 130 ~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~ 208 (933)
T KOG2114|consen 130 SLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGRTPSLK 208 (933)
T ss_pred EEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecCCCccee
Confidence 88888877 88899999999988532 11 1122233 568999999987 77663333345579999988554 223
Q ss_pred -EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 432 -WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 432 -~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
.-.+...+.|..+++....+++++ +..+.+|+....+..
T Consensus 209 ~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 209 VLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPC 248 (933)
T ss_pred eeccCCccceeeecCCCCccEEEec-CceEEEEcCCCccee
Confidence 445566788888887655455553 457999998765543
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.60 E-value=0.0024 Score=68.55 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=79.8
Q ss_pred eCCCCeEEEEEeecCCCEEEEEE----cCCc----EEEEecCCCcE----EEEeccCCcEEEEEEccCCCEEEEEecCCc
Q 005646 392 PHSNYVTCVHFNPVDDNYFISGS----IDGK----VRIWAVLSCHV----VDWVDIRQIVTAVCYRPDGQGGIVGSMMGD 459 (686)
Q Consensus 392 ~h~~~V~~v~fsp~~~~~l~sgs----~Dg~----V~iwd~~~~~~----~~~~~~~~~V~~v~~spdg~~l~~gs~dg~ 459 (686)
..+....++.|+-.+++.+.|.. .+|. -.+|++...++ +..+.++..|.+.+++|+...++.|+.||.
T Consensus 203 rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 203 RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS 282 (545)
T ss_pred EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence 34555577888775666666543 2343 34566665543 245678889999999999999999999999
Q ss_pred EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEE
Q 005646 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVY 539 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~ 539 (686)
|.+||...+.-... + ..-..+.++|+| +|..+++|++.|.+.
T Consensus 283 iiLyD~~~~~t~~~-k---------a~~~P~~iaWHp----------------------------~gai~~V~s~qGelQ 324 (545)
T PF11768_consen 283 IILYDTTRGVTLLA-K---------AEFIPTLIAWHP----------------------------DGAIFVVGSEQGELQ 324 (545)
T ss_pred EEEEEcCCCeeeee-e---------ecccceEEEEcC----------------------------CCcEEEEEcCCceEE
Confidence 99999876532211 0 112356677777 777777777777777
Q ss_pred EEeCCCC
Q 005646 540 MWNCIGH 546 (686)
Q Consensus 540 iWd~~~~ 546 (686)
+||+.-.
T Consensus 325 ~FD~ALs 331 (545)
T PF11768_consen 325 CFDMALS 331 (545)
T ss_pred EEEeecC
Confidence 7777554
No 333
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.51 E-value=3.3e-05 Score=82.42 Aligned_cols=161 Identities=14% Similarity=0.181 Sum_probs=102.6
Q ss_pred ccCCCCeeEEEeeCCC--EEEEEE----CCCcEEEEECCCC--eeeeEee----CCCCeEEEEEeecCCCEEEEEEcCCc
Q 005646 351 HGHSGEILDLSWSKNN--YLLSAS----IDKTVRLWRVGND--HCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGK 418 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~--~L~s~s----~Dg~V~iWd~~~~--~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~Dg~ 418 (686)
.+|....++++|++-. .||+|- .|..+.|||+.++ .+..... ......+++|.. +.+++++|.....
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~ 177 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRS 177 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccch
Confidence 3577899999999865 676663 3568999999887 2222211 334566889985 8999999999999
Q ss_pred EEEEecCCCcEEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeC-CCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 419 VRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNV-SDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 419 V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+.++|++........-....+..+...| .+.+++.- .||.|-+||. .+-+-.+ +...+. .....+.+..++|+|
T Consensus 178 ~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl--~~i~~~-~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPL--QIILRN-ENKKPKQLFALAYCP 253 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHH--HHHhhC-CCCcccceeeEEecc
Confidence 9999998432221111233466778888 67777665 5999999994 2211111 011111 112224689999999
Q ss_pred CCCCeEEEEeCC-CcEEEEeC
Q 005646 497 QDSSKVMVSCAD-SQVRILQG 516 (686)
Q Consensus 497 ~~~~~l~~~s~D-~~I~iwd~ 516 (686)
-...++++...| ++|+++++
T Consensus 254 trtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred CCcchhhhhccCcceEEEecc
Confidence 654455555443 45566653
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.0082 Score=65.50 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=96.5
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.-+++...+++++.|+..|.+.+|+....... .....+-.+.+..+..+++..++|.|+..|.|.|+.++....
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhh------cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 45677888999999999999999986544321 122233556777888899888999999999999998876431
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
. ..+++.+. -+.|...|++++|++
T Consensus 111 ~----------~~~~~t~~----------------------------------------------d~~~~~rVTal~Ws~ 134 (726)
T KOG3621|consen 111 R----------DLDYVTPC----------------------------------------------DKSHKCRVTALEWSK 134 (726)
T ss_pred C----------cceeeccc----------------------------------------------cccCCceEEEEEecc
Confidence 1 11111110 023889999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCe-----eeeEeeCCCCeEEEEEe
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDH-----CLRVFPHSNYVTCVHFN 403 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~-----~~~~~~h~~~V~~v~fs 403 (686)
++ .+++|...|+|.+-.+.+.. ....+.....|..+...
T Consensus 135 ~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 135 NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 99 99999999999998888721 11222255677777664
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.085 Score=57.03 Aligned_cols=125 Identities=13% Similarity=0.067 Sum_probs=69.9
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
+....+....++.+.+.+-..... ....+++..+++||+|+++|.-..+|.+.+.+..-.+........ .
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-------~ 258 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-------S 258 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC-------c
Confidence 455555555566666444333211 233568999999999999999999999999876544333222111 2
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
......+.|+-+ . .++..- ...|.++.... .+.+.-++..++..-.|| |||..-+
T Consensus 259 ~~~p~~~~WCG~-d-av~l~~-~~~l~lvg~~~~~~~~~~~~~~~l~~E~DG-~riit~~ 314 (410)
T PF04841_consen 259 KSPPKQMAWCGN-D-AVVLSW-EDELLLVGPDGDSISFWYDGPVILVSEIDG-VRIITST 314 (410)
T ss_pred CCCCcEEEEECC-C-cEEEEe-CCEEEEECCCCCceEEeccCceEEeccCCc-eEEEeCC
Confidence 244667888873 2 222222 34455544322 233433444444444554 6666543
No 336
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.44 E-value=0.006 Score=51.55 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=55.9
Q ss_pred eEEEEEeecCC---CEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 397 VTCVHFNPVDD---NYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 397 V~~v~fsp~~~---~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
|++|++...++ +.|++|+.|..||+|+- ..++..+.....|++++.... ..++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 67888876443 68999999999999964 467777777888999988777 468889999999999875433
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.00025 Score=77.82 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=125.8
Q ss_pred eEEEeeCCC-EEEEEEC----CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 358 LDLSWSKNN-YLLSASI----DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~----Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
+-.+|+|.. +++.++. .|.|.|| .++|.+.+....+-.+++++|+| ..-.|+.|=.-|.+.+|...+.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence 445799988 7776663 5788888 56777766666566678899999 788888898899999999988877644
Q ss_pred -eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC-----CCeEEEEe
Q 005646 433 -VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD-----SSKVMVSC 506 (686)
Q Consensus 433 -~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~-----~~~l~~~s 506 (686)
..|+.+|..+.|+|+|..++++..-|.+.+|........+...+.-+ .....-...++.++++. ..+.++++
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~h--el~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQH--ELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhh--HhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 46889999999999999999999999999998763322221111111 11111224455555531 22455566
Q ss_pred CCCcEE-EEeCCc-------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 507 ADSQVR-ILQGPN-------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 507 ~D~~I~-iwd~~~-------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.++.+- .++... .-.-.|+|..+..++.+|+|+--|-+.
T Consensus 175 De~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred chhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC
Confidence 655554 333221 122345888888889999998877544
No 338
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.42 E-value=0.045 Score=55.76 Aligned_cols=111 Identities=13% Similarity=0.151 Sum_probs=72.4
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeee---------------EeeCCCCeEEEE-EeecCCCEEEEEEcCCc
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR---------------VFPHSNYVTCVH-FNPVDDNYFISGSIDGK 418 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~---------------~~~h~~~V~~v~-fsp~~~~~l~sgs~Dg~ 418 (686)
.|..+...++- .|+.-+ |+.+.++++..-.... .+.....+...+ -....+...+......+
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 38888888866 444433 5999999987654433 222334444444 11224445555566679
Q ss_pred EEEEecCCC-----cEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 419 VRIWAVLSC-----HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 419 V~iwd~~~~-----~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
|.+|..... +....+.....+..++|. ++.+++|..+ ...+.|+.++..
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCc
Confidence 999988653 344566778889999998 5578888654 588889986554
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.40 E-value=0.062 Score=53.36 Aligned_cols=204 Identities=13% Similarity=0.150 Sum_probs=101.1
Q ss_pred eecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCC-CCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 245 EIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPE-IDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+-...+..|+|.|+.+ ++++....+.|...+. +|+.+..+.+.. .+.-.+.+..+.. ..+.-.........
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~---~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR---YVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE---EEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE---EEEEEcCCCcEEEE
Confidence 4445556699999999755 5666667788877775 577777776543 2222222221110 00000111111111
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEe---ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCC---CeeeeEee---
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEF---HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN---DHCLRVFP--- 392 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~---~~~~~~~~--- 392 (686)
...... ............+ ..+...+-.|+|.+.+ .|+.+-...-.+|+.+.. ...+....
T Consensus 92 ~~~~~~---------~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 92 TIDDDT---------TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp EE-------------TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred EEeccc---------cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc
Confidence 110000 0000000000111 2355678999999987 777777777777777654 22221111
Q ss_pred ------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC----------cEEEEEEccCCCEEEEEec
Q 005646 393 ------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ----------IVTAVCYRPDGQGGIVGSM 456 (686)
Q Consensus 393 ------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~----------~V~~v~~spdg~~l~~gs~ 456 (686)
....+.+++++|.++++++.......|.++| .+++++....... ..-.|+|.++|++.+++ .
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-E 240 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-E 240 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-T
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-C
Confidence 3456889999998888888888899999999 6777776554433 47889999999766655 5
Q ss_pred CCcEEEE
Q 005646 457 MGDCRFY 463 (686)
Q Consensus 457 dg~i~iw 463 (686)
-+..++|
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 5555444
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.39 E-value=0.031 Score=59.74 Aligned_cols=188 Identities=14% Similarity=0.211 Sum_probs=112.9
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeee-------------------------------------------eEe
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCL-------------------------------------------RVF 391 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~-------------------------------------------~~~ 391 (686)
.|..+.++++. .|+.+...|.|.||.....+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57888888886 8888988998888865322111 111
Q ss_pred e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC---------CcEEEEEEcc-----CC---CEEEE
Q 005646 392 P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR---------QIVTAVCYRP-----DG---QGGIV 453 (686)
Q Consensus 392 ~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~---------~~V~~v~~sp-----dg---~~l~~ 453 (686)
. ..++|++++.+ +=.+++.|..+|.+.|.|+|...++...... ..|+++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1 46889999987 5779999999999999999998887554332 3578888863 33 46889
Q ss_pred EecCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEE-EeCC-------------------CCCeEEEEeCCCcEE
Q 005646 454 GSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQ-FLPQ-------------------DSSKVMVSCADSQVR 512 (686)
Q Consensus 454 gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~-fsp~-------------------~~~~l~~~s~D~~I~ 512 (686)
|+..|.+.+|.+-- ..-.+.. ........+..+|..+. |..+ .-.-+++.+.+..+|
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v--~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSV--QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEE--EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EeCCCCEEEEEEecCCCCceEE--EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 99999999998741 1111111 11111123345555554 2221 112366677788999
Q ss_pred EEeCCcc---------------eeE-----cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 513 ILQGPNV---------------IGK-----YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 513 iwd~~~~---------------~~~-----~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++...+. .++ ...+..|++-..+|.|+++.+-.-+
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 9886643 122 2256778888899999999997755
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.36 E-value=0.17 Score=51.96 Aligned_cols=258 Identities=14% Similarity=0.133 Sum_probs=146.3
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------CCCcEEEEEeecCeeeeeeccCC
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
+++.|.|.++... . ++.-.+. .-.+..+|||+.+++++ ..-.|.+||..+-....++.++.
T Consensus 17 ~rv~viD~d~~k~--l----Gmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 17 SRVYVIDADSGKL--L----GMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EEEEEEETTTTEE--E----EEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEEECCCCcE--E----EEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence 5788888765432 1 1111122 23466799999888754 24479999999988777776553
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEE-
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS- 370 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s- 370 (686)
.+ ... .......++++.++ +++.
T Consensus 88 k~----------------------------------------------------R~~---~~~~~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 88 KP----------------------------------------------------RAQ---VVPYKNMFALSADGKFLYVQ 112 (342)
T ss_dssp S-----------------------------------------------------B-----BS--GGGEEE-TTSSEEEEE
T ss_pred cc----------------------------------------------------hhe---ecccccceEEccCCcEEEEE
Confidence 20 000 00122344667777 4433
Q ss_pred -EECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC-CCcEEEE----e-ccCCc-EEEE
Q 005646 371 -ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDW----V-DIRQI-VTAV 442 (686)
Q Consensus 371 -~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~-~~~~~~~----~-~~~~~-V~~v 442 (686)
.+--..|.|-|+..++.+..+.-.+ |...-|..++-|.+-+.||++.-..+. .++.... + ....+ ...-
T Consensus 113 N~TPa~SVtVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~ 189 (342)
T PF06433_consen 113 NFTPATSVTVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP 189 (342)
T ss_dssp EESSSEEEEEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--
T ss_pred ccCCCCeEEEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccccc
Confidence 3445679999999999988887655 333345445678899999999999887 4554311 1 11222 2234
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC----CCCCeEEEEEeCCCCCeEEEEe--C-----CC--
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA----PCKRITGFQFLPQDSSKVMVSC--A-----DS-- 509 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~I~~l~fsp~~~~~l~~~s--~-----D~-- 509 (686)
++...+..++.-+.+|.|+--|+..........+.+...... ..+.-.-+++++..+.+++..- . |+
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 555555566667899999999998877665555443211100 0122345677773333333221 1 22
Q ss_pred cEEEEeCCc--------------ceeEcCCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005646 510 QVRILQGPN--------------VIGKYKDGK-HIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 510 ~I~iwd~~~--------------~~~~~~dg~-~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
.|-++|..+ .++.+.+.+ +|++.+ .++.+.|||..+++
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 244445443 355555555 665554 58999999999976
No 342
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.28 E-value=0.02 Score=48.48 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=71.0
Q ss_pred eeEEEee---CCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE
Q 005646 357 ILDLSWS---KNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 357 V~~l~~s---~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~ 431 (686)
|++|++. .+| .|+.||.|..||+|+ ....+..+...+.|++++-.. ...|+-+..+|+|-+|+-... +-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence 4556554 354 899999999999997 457888888889999998876 478999999999999976332 222
Q ss_pred EeccCCcEEEEEEc-cCC---CEEEEEecCCcEE
Q 005646 432 WVDIRQIVTAVCYR-PDG---QGGIVGSMMGDCR 461 (686)
Q Consensus 432 ~~~~~~~V~~v~~s-pdg---~~l~~gs~dg~i~ 461 (686)
. ..+..++++++. .+| .-|++|=.+|.|-
T Consensus 77 i-KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 I-KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e-ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 233345665543 343 2688888888764
No 343
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.26 E-value=0.12 Score=54.10 Aligned_cols=110 Identities=18% Similarity=0.171 Sum_probs=75.4
Q ss_pred CCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCe-eeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC--C
Q 005646 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-CLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS--C 427 (686)
Q Consensus 353 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~-~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~--~ 427 (686)
..++|++++-- +++|+.+. .+.|.+|++...+ .+..-. ....++++... +++++.|.....|.++.... .
T Consensus 87 ~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 87 VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence 46789999876 44544444 5899999998887 544443 44466666654 57999999888888875543 3
Q ss_pred cEEEE--eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 428 HVVDW--VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 428 ~~~~~--~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
++... ......++++.|-++++.++++..+|.+.++....
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 33322 22355689999987778999999999999998863
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.24 E-value=0.17 Score=56.30 Aligned_cols=172 Identities=10% Similarity=0.077 Sum_probs=95.9
Q ss_pred CCCcEEEEECCCCeeeeEeeCC-C--------------------Ce-EEEEEeecCCCEEEEEEcCC-------------
Q 005646 373 IDKTVRLWRVGNDHCLRVFPHS-N--------------------YV-TCVHFNPVDDNYFISGSIDG------------- 417 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~h~-~--------------------~V-~~v~fsp~~~~~l~sgs~Dg------------- 417 (686)
.++.|.-.|..+++.+..+... . .| ...++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 4678888888888888776521 1 01 1234444 467778887665
Q ss_pred -----cEEEEecCCCcEEEEeccC-CcE------EEEEEc----cCCC---EEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 418 -----KVRIWAVLSCHVVDWVDIR-QIV------TAVCYR----PDGQ---GGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 418 -----~V~iwd~~~~~~~~~~~~~-~~V------~~v~~s----pdg~---~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
.|.-+|+.+++.+-..... ... ....+. -+|. .+++++.+|.++.+|..+++.........
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 6889999999887433211 100 001111 2343 67888899999999999998876544321
Q ss_pred eccccCCCCCeEEEEE---------------eCCCCCeEEEEeCCCcEEEEeCCcc-----------e---eEcCCCCEE
Q 005646 479 HSKKKAPCKRITGFQF---------------LPQDSSKVMVSCADSQVRILQGPNV-----------I---GKYKDGKHI 529 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~f---------------sp~~~~~l~~~s~D~~I~iwd~~~~-----------~---~~~~dg~~l 529 (686)
..... ....|.--.. .+.++.+++.--.+|+ .+|..... . .....+.+|
T Consensus 332 ~~~~~-~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~-~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v 409 (488)
T cd00216 332 QPMAY-DPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK-VVWEKREGTIRDSWNIGFPHWGGSLATAGNLV 409 (488)
T ss_pred ccccc-CCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc-EeeEeeCCccccccccCCcccCcceEecCCeE
Confidence 11000 0011111000 0112223333333443 34443222 0 011266788
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 005646 530 VSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 530 ~sgs~Dg~V~iWd~~~~~ 547 (686)
+.++.||.|+.+|..+++
T Consensus 410 ~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 410 FAGAADGYFRAFDATTGK 427 (488)
T ss_pred EEECCCCeEEEEECCCCc
Confidence 888999999999999887
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.0024 Score=69.47 Aligned_cols=147 Identities=13% Similarity=0.147 Sum_probs=101.8
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec--cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
+...|.--++.. ++++++.|+.-|.|++|+-..++...... ....+...+.+++..++|+|+..|.|.+|-+.....
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 444444444555 78999999999999999988887664443 556677888999999999999999999999876322
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
..++....-.+.|...|+++.|++ ++..+.+|...|+|..-.+.....+--.-+.|. ..|+.|---|...
T Consensus 111 --~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il--~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 111 --RDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL--SEDSEIVQLDYLQ 180 (726)
T ss_pred --CcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceee--ccCcceEEeeccc
Confidence 122223333455889999999999 888888888888887776655212212222222 3566655555444
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.08 E-value=0.00083 Score=44.28 Aligned_cols=35 Identities=49% Similarity=1.079 Sum_probs=31.5
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
..+.+|...|+++.|.+++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34567899999999999999999999999999996
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.05 E-value=0.58 Score=49.61 Aligned_cols=265 Identities=14% Similarity=0.173 Sum_probs=127.9
Q ss_pred eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCC-------
Q 005646 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE------- 292 (686)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~------- 292 (686)
+..+.+.|+++.+... . .+......+....|||+|++||-.. ++.|.+++..++...+.-....
T Consensus 20 s~~~~y~i~d~~~~~~--~------~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~ 90 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEI--T------PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGV 90 (353)
T ss_dssp EEEEEEEEEETTTTEE--E------ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB
T ss_pred ccceeEEEEecCCCce--E------ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCc
Confidence 3456788888776432 1 1222256788999999999999885 5789999987774332221110
Q ss_pred ----------CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc------eEEEeC----------CccccccCCC
Q 005646 293 ----------IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES------ACVVFP----------PKVFRILEKP 346 (686)
Q Consensus 293 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----------~~~~~~~~~~ 346 (686)
.....+.++++. ..+..+.++......+....-.... ..+.++ ..++++....
T Consensus 91 ~dwvyeEEv~~~~~~~~WSpd~-~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~ 169 (353)
T PF00930_consen 91 PDWVYEEEVFDRRSAVWWSPDS-KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK 169 (353)
T ss_dssp --HHHHHHTSSSSBSEEE-TTS-SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC
T ss_pred cceeccccccccccceEECCCC-CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc
Confidence 011222222222 2222233332222222211111110 011111 0112222222
Q ss_pred eEEe------ccCCCCeeEEEeeCCC-EEEEEE--CCC---cEEEEECCCCeeeeEee--CCCCe---EEEEEe-ecCCC
Q 005646 347 LHEF------HGHSGEILDLSWSKNN-YLLSAS--IDK---TVRLWRVGNDHCLRVFP--HSNYV---TCVHFN-PVDDN 408 (686)
Q Consensus 347 ~~~l------~~h~~~V~~l~~s~~~-~L~s~s--~Dg---~V~iWd~~~~~~~~~~~--h~~~V---~~v~fs-p~~~~ 408 (686)
...+ ..-...+..+.|.+++ .|+..- .+. .+.+.|..++.+...+. ....| ....|. +.+..
T Consensus 170 ~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~ 249 (353)
T PF00930_consen 170 TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNE 249 (353)
T ss_dssp CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSE
T ss_pred EEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCE
Confidence 2121 1234567889999988 355443 332 46777887776544443 33333 355655 63555
Q ss_pred EEEEEEcCCc--EEEEecCCCcEEEEeccCCcEEE-EEEccCCCEEE-EEecC--Cc--EEEEeCC-CCeeeeeeeEEee
Q 005646 409 YFISGSIDGK--VRIWAVLSCHVVDWVDIRQIVTA-VCYRPDGQGGI-VGSMM--GD--CRFYNVS-DNHLELDAEICVH 479 (686)
Q Consensus 409 ~l~sgs~Dg~--V~iwd~~~~~~~~~~~~~~~V~~-v~~spdg~~l~-~gs~d--g~--i~iwd~~-~~~~~~~~~~~~~ 479 (686)
+|.....||. |.+++..++....+....-.|+. +.++++++.|+ ++..+ +. ++.-++. .+.+.. +.
T Consensus 250 ~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~-----LT 324 (353)
T PF00930_consen 250 FLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC-----LT 324 (353)
T ss_dssp EEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE-----SS
T ss_pred EEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe-----cc
Confidence 6666667775 55556666665555555566755 67888877665 44432 23 4444555 333321 11
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
.....| ..+.|+| +++.++.
T Consensus 325 ~~~~~~----~~~~~Sp-dg~y~v~ 344 (353)
T PF00930_consen 325 CEDGDH----YSASFSP-DGKYYVD 344 (353)
T ss_dssp TTSSTT----EEEEE-T-TSSEEEE
T ss_pred CCCCCc----eEEEECC-CCCEEEE
Confidence 111111 6889999 4444433
No 348
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.03 E-value=0.32 Score=49.97 Aligned_cols=143 Identities=10% Similarity=0.069 Sum_probs=83.5
Q ss_pred EEEEEECCCcEEEEECC-CCeeeeE----ee-CCCCe-EEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE---Eecc-
Q 005646 367 YLLSASIDKTVRLWRVG-NDHCLRV----FP-HSNYV-TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD---WVDI- 435 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~-~~~~~~~----~~-h~~~V-~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~---~~~~- 435 (686)
.+.+-+.||++.-..+. .|+.... |. ..+++ ..-++.. .+..++--+.+|.|+--|+....... +.-.
T Consensus 149 ~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 149 GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 45566667777666665 3333222 11 12222 2233433 55566667889999998887765431 1110
Q ss_pred ---------CCcEEEEEEccCCCEEEEEecCC----------cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 436 ---------RQIVTAVCYRPDGQGGIVGSMMG----------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 436 ---------~~~V~~v~~spdg~~l~~gs~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.+.-.-+++++..+.|++....| .|.+||+.+++......+. ..+.+|+.+.
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---------~~~~Si~Vsq 298 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---------HPIDSIAVSQ 298 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---------EEESEEEEES
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---------CccceEEEcc
Confidence 12233477887666655532221 3888899998877654432 2377999999
Q ss_pred CCCCeEEEE-eCCCcEEEEeCCcc
Q 005646 497 QDSSKVMVS-CADSQVRILQGPNV 519 (686)
Q Consensus 497 ~~~~~l~~~-s~D~~I~iwd~~~~ 519 (686)
++..+|+.. ..++.+.+||..+.
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT-
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCC
Confidence 777777655 45899999999864
No 349
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0027 Score=68.25 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=75.4
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEE-EEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT-AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~-~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
-...|.-+.|+| .-.+||.+..+|.|-+..+.-.++....-+...++ ++||.|||+.+|+|-.||+|++.|+.++...
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 456788899999 89999999999999999998555555554666676 9999999999999999999999999987754
Q ss_pred eeeeEEeeccccCCCCCeEEEEEeC
Q 005646 472 LDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 472 ~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
... .......|+.+-|.+
T Consensus 98 ~~~-------~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSF-------LFSVETDISKGIWDR 115 (665)
T ss_pred ecc-------ccccccchheeeccc
Confidence 332 122234567777754
No 350
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.02 E-value=0.095 Score=58.00 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=78.2
Q ss_pred eCCC-EEEEEECCCcEEEEECCC-----CeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCc-------
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGN-----DHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCH------- 428 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~-----~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~------- 428 (686)
.++| +... .++.|.+.|..+ .+.+..+.-......+.++| |++++++++ .+.+|.|.|+.+.+
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 3456 3333 367899999998 46677777888889999999 888877665 58999999998855
Q ss_pred -----EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 429 -----VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 429 -----~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
++............+|.++|+...+-..|..|-.||+..
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 233334444556789999999888888899999999875
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.00 E-value=0.13 Score=53.84 Aligned_cols=130 Identities=13% Similarity=0.196 Sum_probs=83.0
Q ss_pred CcEEEEECCCC-----ee--eeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-EEEEeccCC--cEEEEEE
Q 005646 375 KTVRLWRVGND-----HC--LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQ--IVTAVCY 444 (686)
Q Consensus 375 g~V~iWd~~~~-----~~--~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~~~--~V~~v~~ 444 (686)
|.|.++++... +. +......++|++|+-- ++ +|+.+. .++|.+|++...+ +.....+.. .++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 22 2223378999999875 33 444444 5899999999888 664444433 4555544
Q ss_pred ccCCCEEEEEecCCcEEEEeCCC--CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeE
Q 005646 445 RPDGQGGIVGSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK 522 (686)
Q Consensus 445 spdg~~l~~gs~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~ 522 (686)
.++++++|.....+.++.... .++... . .......++++.|.+
T Consensus 138 --~~~~I~vgD~~~sv~~~~~~~~~~~l~~v------a-~d~~~~~v~~~~~l~-------------------------- 182 (321)
T PF03178_consen 138 --FKNYILVGDAMKSVSLLRYDEENNKLILV------A-RDYQPRWVTAAEFLV-------------------------- 182 (321)
T ss_dssp --ETTEEEEEESSSSEEEEEEETTTE-EEEE------E-EESS-BEEEEEEEE---------------------------
T ss_pred --cccEEEEEEcccCEEEEEEEccCCEEEEE------E-ecCCCccEEEEEEec--------------------------
Confidence 466999999989998885543 222211 1 111234577888876
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+++.++.+..+|.|.++..+.
T Consensus 183 --d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 183 --DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp --SSSEEEEEETTSEEEEEEE-S
T ss_pred --CCcEEEEEcCCCeEEEEEECC
Confidence 446788888888888888764
No 352
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0029 Score=68.02 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=78.7
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeE-EEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVT-CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~-~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
...|.-+.|+|.- ++|.+..+|.|.+..+. .+.+.++. ++..++ +++|.| ||+.|+.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3467889999987 99999999999999998 88888888 887787 999999 9999999999999999999998877
Q ss_pred EE--eccCCcEEEEEEcc
Q 005646 431 DW--VDIRQIVTAVCYRP 446 (686)
Q Consensus 431 ~~--~~~~~~V~~v~~sp 446 (686)
.- ......|.++-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 54 44566788888864
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.95 E-value=0.5 Score=48.04 Aligned_cols=161 Identities=12% Similarity=0.137 Sum_probs=94.2
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
..++.++.|+.+| +.+++....... . -..+...|..|...|+-+.|+.-+ |+.++++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~-~-------~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKP-T-------RILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccc-e-------eEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 4567889998888 888887221111 1 111334499999999877776664 59999999876542221100
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE--eeCCC-E
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS--WSKNN-Y 367 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~--~s~~~-~ 367 (686)
... . +. .....-......+...+ -...+ .
T Consensus 75 ~~~--------------------~-----------~~-----------------~~~~~~~~~~~~v~~f~~~~~~~~~~ 106 (275)
T PF00780_consen 75 LAF--------------------P-----------KS-----------------RSLPTKLPETKGVSFFAVNGGHEGSR 106 (275)
T ss_pred ccc--------------------c-----------cc-----------------ccccccccccCCeeEEeeccccccce
Confidence 000 0 00 00000001122333333 11223 4
Q ss_pred EEEEECCCcEEEEECCCC-----eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe
Q 005646 368 LLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~-----~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~ 433 (686)
.+.....++|.+|..... +..+.+.....+.+++|. ++.++.|..++ ..+.|+.++....+.
T Consensus 107 ~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~---~~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 107 RLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL---GNKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred EEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe---CCEEEEEeCCc-eEEEecCCCCceEEe
Confidence 444555568888887653 466677788999999997 46787777554 778899987766554
No 354
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.89 E-value=0.0028 Score=41.59 Aligned_cols=37 Identities=38% Similarity=0.770 Sum_probs=32.0
Q ss_pred eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 386 HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 386 ~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
+++..+. |...|+++.|+| .+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 4555555 888999999999 779999999999999996
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.81 E-value=0.021 Score=65.25 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=70.3
Q ss_pred EEEEEECCCcEEEEECCCCe--eee----EeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcE
Q 005646 367 YLLSASIDKTVRLWRVGNDH--CLR----VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIV 439 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~--~~~----~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V 439 (686)
..+.|-.+..+..||.+-.. ++. .+......+|++-. ...+||.|+.+|.||+||-...+.. .+.+...+|
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 45667778889999988542 332 22355667888766 4668999999999999995443333 334668999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
..|..+.||++|++. .+..+.++++
T Consensus 622 ~~iDvt~DGkwilaT-c~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILAT-CKTYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEe-ecceEEEEEE
Confidence 999999999998765 4567888876
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.80 E-value=0.08 Score=57.19 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=68.4
Q ss_pred eEEEeeCCC--EEEEEECCCc--EEEEECCCCeeeeEeeCC-CCeEEEEEeecCCCEEEEEE-cCCc--EEEEecCCCcE
Q 005646 358 LDLSWSKNN--YLLSASIDKT--VRLWRVGNDHCLRVFPHS-NYVTCVHFNPVDDNYFISGS-IDGK--VRIWAVLSCHV 429 (686)
Q Consensus 358 ~~l~~s~~~--~L~s~s~Dg~--V~iWd~~~~~~~~~~~h~-~~V~~v~fsp~~~~~l~sgs-~Dg~--V~iwd~~~~~~ 429 (686)
...+|+|+| ++++...|+. |.+.|+..+...+ +.+. +.-+.=.|+| +|+.++-.+ ..|. |.++++.....
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce
Confidence 456899999 5666777776 4555776666333 4433 2223567889 787776655 3444 66667777665
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEEecC-Cc--EEEEeCCCCe
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMM-GD--CRFYNVSDNH 469 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~gs~d-g~--i~iwd~~~~~ 469 (686)
.........-..-.|+|||++++..+.. |. |.++|+.++.
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 4433333322377899999999887643 44 5566655443
No 357
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.71 E-value=0.26 Score=53.30 Aligned_cols=164 Identities=13% Similarity=0.127 Sum_probs=89.5
Q ss_pred cEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-------c-CCcEEEEEEcc
Q 005646 376 TVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-------I-RQIVTAVCYRP 446 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-------~-~~~V~~v~~sp 446 (686)
.|+||+. .|+.+..+. ..+.|.++.|.. ...|++-..||.+++||+.... ....+ . ...+.+..+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 5899976 455666666 448999999986 4556677789999999997444 11111 0 11122223333
Q ss_pred CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc-CC-CCCeEE-EEEeCCCCCeEEEEeCCCcEEEEeC-------
Q 005646 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK-AP-CKRITG-FQFLPQDSSKVMVSCADSQVRILQG------- 516 (686)
Q Consensus 447 dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~-~~~I~~-l~fsp~~~~~l~~~s~D~~I~iwd~------- 516 (686)
+| +++-+.++.+.+.+-.................. .+ ...... ..++. +....+....++.+.+.+.
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~i~ 214 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQID 214 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccccc
Confidence 44 444455565555432221111000000000000 00 011111 23444 4444555555667774432
Q ss_pred ----CcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 517 ----PNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 517 ----~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
...++.+|+|++||.-..+|.+.|...+-.
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 235789999999999999999999876543
No 358
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.70 E-value=0.65 Score=46.11 Aligned_cols=182 Identities=13% Similarity=0.114 Sum_probs=111.0
Q ss_pred ceEEEEEeeCCCEEEEEeCCC--cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 252 SILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
-...+.|..+|.++-+.|.-| .|+.+|+.+++......++..-
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----------------------------------- 90 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----------------------------------- 90 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------------------------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-----------------------------------
Confidence 345788878898888888766 7999999998866655543210
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCE
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~ 409 (686)
| -.-+.-+.+.+..|.| .++...+||..+.+.+..+...+.=+.++. ++..
T Consensus 91 ----------F------gEGit~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~ 141 (264)
T PF05096_consen 91 ----------F------GEGITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKR 141 (264)
T ss_dssp -----------------EEEEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSC
T ss_pred ----------c------ceeEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCE
Confidence 0 0001113445666666 468899999999999999997777778873 6667
Q ss_pred EEEEEcCCcEEEEecCCCcEEEEecc---CC---cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc--
Q 005646 410 FISGSIDGKVRIWAVLSCHVVDWVDI---RQ---IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK-- 481 (686)
Q Consensus 410 l~sgs~Dg~V~iwd~~~~~~~~~~~~---~~---~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~-- 481 (686)
|+......+|+++|..+.+.+..... .. .++-+.|- +|...|=-=....|..-|..+++......+.....
T Consensus 142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~ 220 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEV 220 (264)
T ss_dssp EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHH
T ss_pred EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcc
Confidence 77776677899999988766543322 22 34556664 66555555556778888888887655332221110
Q ss_pred -----ccCCCCCeEEEEEeCCC
Q 005646 482 -----KKAPCKRITGFQFLPQD 498 (686)
Q Consensus 482 -----~~~~~~~I~~l~fsp~~ 498 (686)
......-.+++++.|..
T Consensus 221 ~~~~~~~~~~dVLNGIAyd~~~ 242 (264)
T PF05096_consen 221 GRDKSRQPDDDVLNGIAYDPET 242 (264)
T ss_dssp TSTTST--TTS-EEEEEEETTT
T ss_pred cccccccccCCeeEeEeEeCCC
Confidence 01113458899999943
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.68 E-value=0.12 Score=55.74 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=81.0
Q ss_pred EEeccCCCCeeEEEeeCCC-EEEEE---ECC-CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEE-EEEcCCc--E
Q 005646 348 HEFHGHSGEILDLSWSKNN-YLLSA---SID-KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGK--V 419 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~-~L~s~---s~D-g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~-sgs~Dg~--V 419 (686)
..+..-...+..-+|+|++ .++-. ... ..+.++++.+++........+.-..-+|+| +++.|+ +...||. |
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~i 264 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccE
Confidence 3333444567778899998 33322 222 359999999998877777666666788999 666555 4556665 6
Q ss_pred EEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec-CCc--EEEEeCCCCe
Q 005646 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGD--CRFYNVSDNH 469 (686)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg~--i~iwd~~~~~ 469 (686)
.++|+.++....+....+.-+.=.|+|||+.++..+. .|. |.+++.....
T Consensus 265 y~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 265 YLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred EEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 6668888776665555555557789999998887654 444 6666665544
No 360
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.63 E-value=0.57 Score=49.51 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=79.6
Q ss_pred eCCC-EEEEEE--CC----CcEEEEECCCCeeeeEee----CCCCeEEEEEeecCCCEEEEEEc----------------
Q 005646 363 SKNN-YLLSAS--ID----KTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSI---------------- 415 (686)
Q Consensus 363 s~~~-~L~s~s--~D----g~V~iWd~~~~~~~~~~~----h~~~V~~v~fsp~~~~~l~sgs~---------------- 415 (686)
-|+| .++|+- .+ |-+.+.|-++...+.... ....-..+-|.| ..+.++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhh
Confidence 3666 555542 22 457778877777766665 234556788888 7888888752
Q ss_pred ----CCcEEEEecCCCcEEEEeccC---CcEEEEEEcc--CCCEEEEEe-cCCcEE-EEeCCCCeeeeeeeEEeeccccC
Q 005646 416 ----DGKVRIWAVLSCHVVDWVDIR---QIVTAVCYRP--DGQGGIVGS-MMGDCR-FYNVSDNHLELDAEICVHSKKKA 484 (686)
Q Consensus 416 ----Dg~V~iwd~~~~~~~~~~~~~---~~V~~v~~sp--dg~~l~~gs-~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~ 484 (686)
..+|.+||+.+.+.++.++.. ..+..|.|.. +..+-++|+ -..+|. +|....+....+..+.+......
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 367999999999999888775 3466677755 444444433 344444 44446677666655555433210
Q ss_pred -------------CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 485 -------------PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 485 -------------~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
-..-|+.|..+.++.-+.++.-.+|.||.||+.+
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 0234789999996655666666789999998653
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.59 E-value=0.044 Score=62.74 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=85.7
Q ss_pred EEEEECCCcEEEEECCCCeeeeEee-CC-CCeEEEEEee----cCCCEEEEEEcCCcEEEEecCCC--cEEE----Eecc
Q 005646 368 LLSASIDKTVRLWRVGNDHCLRVFP-HS-NYVTCVHFNP----VDDNYFISGSIDGKVRIWAVLSC--HVVD----WVDI 435 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~~~~~~~~-h~-~~V~~v~fsp----~~~~~l~sgs~Dg~V~iwd~~~~--~~~~----~~~~ 435 (686)
|........|+-.|+..|+.+..+. |. .+|..++-.. .+...-+.|-.+..|..||.|-. +++. ....
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 3344456889999999999999998 33 3355443211 12445667778889999999864 2342 1223
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
....+|++-+.+| +||+|+.+|.||+||--. +. ......+-+.+|.+|..+. ++++|++++
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~-------AKT~lp~lG~pI~~iDvt~-DGkwilaTc 637 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KR-------AKTALPGLGDPIIGIDVTA-DGKWILATC 637 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeecccc-hh-------hhhcCCCCCCCeeEEEecC-CCcEEEEee
Confidence 4567888888888 889999999999999422 11 1112233458899999999 455544443
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.62 Score=49.92 Aligned_cols=184 Identities=15% Similarity=0.165 Sum_probs=127.4
Q ss_pred eEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc---CCcEEEEecCCCcEEEE
Q 005646 358 LDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 358 ~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~---Dg~V~iwd~~~~~~~~~ 432 (686)
..++.++.+ .+++...+..|.+.|..+.+......-......++++| +++.++.+.. ++++.+.|..+.++...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 466777777 45555567999999998888888887555788999999 7766666554 68999999999988866
Q ss_pred eccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe-CC--
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-AD-- 508 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D-- 508 (686)
.........++++|+|+.+++.. .++.|.+.|........ .... ...........+.+.| ++.++.+.. .+
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~---~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~ 230 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG---SLVGVGTGPAGIAVDP-DGNRVYVANDGSGS 230 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc---cccccCCCCceEEECC-CCCEEEEEeccCCC
Confidence 55443348999999999776665 68899999987765442 1100 0111223456788888 555444443 33
Q ss_pred CcEEEEeCCc----------------ceeEcCCCCEEEEEeCC-CcEEEEeCCCCC
Q 005646 509 SQVRILQGPN----------------VIGKYKDGKHIVSAGED-SNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~~----------------~~~~~~dg~~l~sgs~D-g~V~iWd~~~~~ 547 (686)
+.+...|..+ .+...|+|+++.+.... +.|.+-|..+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 5777777543 24667788888887544 778877776644
No 363
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.47 E-value=0.19 Score=54.51 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=69.2
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC------------cEEEE
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC------------HVVDW 432 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~------------~~~~~ 432 (686)
| +|+..+ ++.|.+||+.+++.++.+.... |..|.|++ ++++++..+.+ .+.|++.... .....
T Consensus 117 G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 6 444444 4489999999999999998664 99999999 89999988855 7888776544 33333
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
......|.+.+|..| .++-.+.. .++. +-.+...... .-..++.=+.+.| ..+.+.....|+.|.
T Consensus 193 ~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~---------~ld~~~yllgy~~-~~~~ly~~Dr~~~v~ 257 (443)
T PF04053_consen 193 HEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA---------HLDKPLYLLGYLP-KENRLYLIDRDGNVI 257 (443)
T ss_dssp EEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE---------E-SS--EEEEEET-TTTEEEEE-TT--EE
T ss_pred EEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE---------EcCCceEEEEEEc-cCCEEEEEECCCCEE
Confidence 334677888888765 33333333 4544 3223321100 0113355555666 445666666666666
Q ss_pred EEeCC
Q 005646 513 ILQGP 517 (686)
Q Consensus 513 iwd~~ 517 (686)
.+.+.
T Consensus 258 ~~~ld 262 (443)
T PF04053_consen 258 SYELD 262 (443)
T ss_dssp EEE--
T ss_pred EEEEC
Confidence 66543
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.44 E-value=0.78 Score=51.01 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=71.6
Q ss_pred CEEEEEECCCcEEEEECCCCeeeeEeeCCCC------eE-EEEEeecCCCEEEEEE---------cCCcEEEEecCCCcE
Q 005646 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNY------VT-CVHFNPVDDNYFISGS---------IDGKVRIWAVLSCHV 429 (686)
Q Consensus 366 ~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~------V~-~v~fsp~~~~~l~sgs---------~Dg~V~iwd~~~~~~ 429 (686)
+.++.++.++.|.-+|..+++.+..+.-... +. +..+ .+.+++.++ .+|.|.-+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 5778888899999999999999988873332 11 1222 224555554 368899999999987
Q ss_pred EEEeccC-C--------------------cE-EEEEEccCCCEEEEEecCC------------------cEEEEeCCCCe
Q 005646 430 VDWVDIR-Q--------------------IV-TAVCYRPDGQGGIVGSMMG------------------DCRFYNVSDNH 469 (686)
Q Consensus 430 ~~~~~~~-~--------------------~V-~~v~~spdg~~l~~gs~dg------------------~i~iwd~~~~~ 469 (686)
+-..... . .+ ...++.+.+..+++++.++ .+.-+|..+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 7333221 1 01 1345555667888887665 68899999988
Q ss_pred eeeeee
Q 005646 470 LELDAE 475 (686)
Q Consensus 470 ~~~~~~ 475 (686)
.....+
T Consensus 268 ~~W~~~ 273 (488)
T cd00216 268 VKWFYQ 273 (488)
T ss_pred EEEEee
Confidence 776443
No 365
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.39 E-value=0.27 Score=55.46 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=105.5
Q ss_pred eEEEeeCCCEEEEEECC------CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCc-----EEEEecCC
Q 005646 358 LDLSWSKNNYLLSASID------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK-----VRIWAVLS 426 (686)
Q Consensus 358 ~~l~~s~~~~L~s~s~D------g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~-----V~iwd~~~ 426 (686)
.+++...+...++|+.| .++..||..+.+....-.-...-........++.+.++|+.||. |-.||..+
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence 45555554577888888 46788898888755433311111112222227889999999965 66777777
Q ss_pred CcEEEEeccCCcEEEEEE-ccCCCEEEEEecCC------cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 427 CHVVDWVDIRQIVTAVCY-RPDGQGGIVGSMMG------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~-spdg~~l~~gs~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
.+-.....+......... .-+|+..++|+.++ ++..||..++.......+..... -.+++.. ++
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-------~~g~a~~--~~ 476 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-------GFGVAVL--NG 476 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-------cceEEEE--CC
Confidence 653332222222222222 23788888888554 47899999988766544332211 1223333 46
Q ss_pred CeEEEEeCCCc-----EEEEeCCcc----ee-----------EcCCCCEEEEEeCCC-----cEEEEeCCCCC
Q 005646 500 SKVMVSCADSQ-----VRILQGPNV----IG-----------KYKDGKHIVSAGEDS-----NVYMWNCIGHE 547 (686)
Q Consensus 500 ~~l~~~s~D~~-----I~iwd~~~~----~~-----------~~~dg~~l~sgs~Dg-----~V~iWd~~~~~ 547 (686)
.++++|+.|+. |..||..+. ++ ..-+++..++|+.|| +|..||..+.+
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 78888887763 666776531 11 111777888888775 45666655543
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=1.1 Score=47.92 Aligned_cols=154 Identities=17% Similarity=0.212 Sum_probs=106.0
Q ss_pred CeeEEEeeCCC-EEEEEEC---CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCcEE
Q 005646 356 EILDLSWSKNN-YLLSASI---DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVV 430 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~---Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~~~ 430 (686)
.-..+++++++ .+..+.. ++++.+.|..+.+.+....-...-..+++.| +++.++... .++.|.+.|..+..+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence 44678899988 5544443 7899999999999888865332238999999 888555554 7899999998777666
Q ss_pred E-----EeccCCcEEEEEEccCCCEEEEEecC---CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 431 D-----WVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 431 ~-----~~~~~~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
. ..........+.++|+|+.+.+.... +.+...|..++....... ..... ....+.+.| ++..+
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~------~~~~~-~~~~v~~~p-~g~~~ 267 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL------PVGSG-APRGVAVDP-AGKAA 267 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc------ccccC-CCCceeECC-CCCEE
Confidence 3 23334445678999999977765544 589999988776543210 11111 356688899 55655
Q ss_pred EEE-eCCCcEEEEeCCc
Q 005646 503 MVS-CADSQVRILQGPN 518 (686)
Q Consensus 503 ~~~-s~D~~I~iwd~~~ 518 (686)
.+. +..+.+.+.|..+
T Consensus 268 yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 268 YVANSQGGTVSVIDGAT 284 (381)
T ss_pred EEEecCCCeEEEEeCCC
Confidence 555 5558888888765
No 367
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.28 E-value=1.9 Score=45.34 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=53.3
Q ss_pred cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc---CC-cEEEEecCC--CcEEEEe--ccCCcEEEEEEccC
Q 005646 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI---DG-KVRIWAVLS--CHVVDWV--DIRQIVTAVCYRPD 447 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~---Dg-~V~iwd~~~--~~~~~~~--~~~~~V~~v~~spd 447 (686)
.|.--|+.+++....+.....+..++|+|.++.+|+-|-. +. .-|||-+++ ....... .....+..=-|.||
T Consensus 169 ~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~D 248 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPD 248 (386)
T ss_dssp EEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TT
T ss_pred eEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCC
Confidence 4566678888887777788899999999977777777664 22 136675543 2222211 22344666678999
Q ss_pred CCEEEEEec-----CCcEEEEeCCCCeee
Q 005646 448 GQGGIVGSM-----MGDCRFYNVSDNHLE 471 (686)
Q Consensus 448 g~~l~~gs~-----dg~i~iwd~~~~~~~ 471 (686)
|..|.--+. +..|.-+|+.++...
T Consensus 249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 249 GSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp SS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 987655222 335777777776543
No 368
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.48 Score=47.16 Aligned_cols=166 Identities=10% Similarity=0.171 Sum_probs=110.4
Q ss_pred ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
.|-...|.+|.|+|+. .|++......-.||=...|+.++++. .-.....|.+.- ++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3455669999999998 88888888888888778899999887 223345566665 6667777667888888877654
Q ss_pred cEE-E---------Eecc-CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe--eccccCCCCCeEEEEE
Q 005646 428 HVV-D---------WVDI-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV--HSKKKAPCKRITGFQF 494 (686)
Q Consensus 428 ~~~-~---------~~~~-~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~I~~l~f 494 (686)
..+ . ...+ ......++|.|..+.|.++=...-+.||.+....-.....+.. .....--...|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 211 1 1112 4567889999999999998887778888776332111100000 0000011245889999
Q ss_pred eCCCCCeEEEEeCCCcEEEEeCC
Q 005646 495 LPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 495 sp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.+..+.+|+.+..++.+.-.|..
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC
Confidence 99777777777777777666643
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.92 E-value=0.58 Score=52.89 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=62.2
Q ss_pred eeEEEeeCCC-EEEEEECC------------CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEE--
Q 005646 357 ILDLSWSKNN-YLLSASID------------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI-- 421 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~D------------g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~i-- 421 (686)
...-.|+|+| .|++.+.. +.+.+.++..+.... .....|..+.|+| |+..++... +|+|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence 6677888886 56555432 223333443333322 3356799999999 999887766 577777
Q ss_pred -EecCCCcEE-----EE-eccCCcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 422 -WAVLSCHVV-----DW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 422 -wd~~~~~~~-----~~-~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
-....+... .. ......+..+.|.+++.++ ++..++...+|.+
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 443444311 11 1233446889999999854 6555555555544
No 370
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=2 Score=42.91 Aligned_cols=165 Identities=11% Similarity=0.176 Sum_probs=104.0
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+.+-...|.++.|+|+.+.|++......-.||=..+|+.+..+.....
T Consensus 78 akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----------------------------- 128 (316)
T COG3204 78 AKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----------------------------- 128 (316)
T ss_pred ccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-----------------------------
Confidence 444566666799999999999999888888888887777877666543211
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCee----------eeEe
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC----------LRVF 391 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~----------~~~~ 391 (686)
..--.+.|..+| +.++--.++.+.+..+..... +...
T Consensus 129 --------------------------------~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~ 176 (316)
T COG3204 129 --------------------------------SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTT 176 (316)
T ss_pred --------------------------------CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEecccc
Confidence 122345555555 444444566666665544321 1122
Q ss_pred eC-CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc-EEE---Eecc-------CCcEEEEEEcc-CCCEEEEEecCC
Q 005646 392 PH-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVD---WVDI-------RQIVTAVCYRP-DGQGGIVGSMMG 458 (686)
Q Consensus 392 ~h-~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-~~~---~~~~-------~~~V~~v~~sp-dg~~l~~gs~dg 458 (686)
.+ +.....++|.| ....|+.+-.-.-++||.+.... .+. ...+ -..|.++.|++ .+..++.+..++
T Consensus 177 ~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr 255 (316)
T COG3204 177 NKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR 255 (316)
T ss_pred CCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCc
Confidence 23 66788999999 66666666666677887765432 111 1111 12367788887 556677777788
Q ss_pred cEEEEeCCCCe
Q 005646 459 DCRFYNVSDNH 469 (686)
Q Consensus 459 ~i~iwd~~~~~ 469 (686)
.+.-.|....-
T Consensus 256 ~l~Evd~~G~~ 266 (316)
T COG3204 256 RLLEVDLSGEV 266 (316)
T ss_pred eEEEEecCCCe
Confidence 88888876553
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.82 E-value=0.18 Score=56.83 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=63.5
Q ss_pred CCCCeeEEEeeCCC-EEEEEE------CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---------
Q 005646 353 HSGEILDLSWSKNN-YLLSAS------IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID--------- 416 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~s~s------~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D--------- 416 (686)
....+...+++|+| .++..- .|..-.||=...+.....+......+.-.|+| ++..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECC-CCCceEEEecCcceEEEecc
Confidence 33467889999999 544433 24444444332222223333333488899999 87777666532
Q ss_pred ---CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEE
Q 005646 417 ---GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF 462 (686)
Q Consensus 417 ---g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~i 462 (686)
+.+.+.++..+.... .....|..+.|+|||..++.-. +|.|++
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 233333444333322 3456799999999999988765 466666
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.72 E-value=1.6 Score=44.92 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=61.1
Q ss_pred eCCCEEEEEECCCcEEEEECCCCeeeeEee------CCCCeEEEEEeecCCCEEEEEEc-----------CCcEEEEecC
Q 005646 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSI-----------DGKVRIWAVL 425 (686)
Q Consensus 363 s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs~-----------Dg~V~iwd~~ 425 (686)
...+.|+++.. -+.+++..++..+..+. .....+.+...| ++.+.++... -|.|+.+|.
T Consensus 75 d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p- 150 (307)
T COG3386 75 DAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP- 150 (307)
T ss_pred cCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-
Confidence 34446666543 45666666555533332 235567788888 7776665444 133444454
Q ss_pred CCcEEEEe-ccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCC
Q 005646 426 SCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSD 467 (686)
Q Consensus 426 ~~~~~~~~-~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~ 467 (686)
.+..+... ++-..-+.|+||||++.|+.+.. .+.|+-|++..
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 45444433 33555678999999988877755 47788887753
No 373
>PHA02713 hypothetical protein; Provisional
Probab=95.68 E-value=0.21 Score=56.42 Aligned_cols=170 Identities=12% Similarity=0.059 Sum_probs=93.5
Q ss_pred EEEEEECC------CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC-----cEEEEecCCCcEEEEe
Q 005646 367 YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSCHVVDWV 433 (686)
Q Consensus 367 ~L~s~s~D------g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg-----~V~iwd~~~~~~~~~~ 433 (686)
.++.|+.+ ..+..||..+......-. ....-.+++.. ++.+++.|+.++ .+..||..+.+-....
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 55666643 347788888775432222 11111122222 678888888764 4788998876533322
Q ss_pred ccCCcEEEE-EEccCCCEEEEEecCC-----------------------cEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 434 DIRQIVTAV-CYRPDGQGGIVGSMMG-----------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 434 ~~~~~V~~v-~~spdg~~l~~gs~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
....+.... +..-+|+..++|+.++ .+..||..+++......+... .. -
T Consensus 384 ~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~------r~-~ 456 (557)
T PHA02713 384 DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG------TI-R 456 (557)
T ss_pred CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc------cc-c
Confidence 222221111 1123678888887653 478899888876543221110 01 1
Q ss_pred EEEEEeCCCCCeEEEEeCC------CcEEEEeCCc--ceeEcC--------------CCCEEEEEeCCC--cEEEEeCCC
Q 005646 490 TGFQFLPQDSSKVMVSCAD------SQVRILQGPN--VIGKYK--------------DGKHIVSAGEDS--NVYMWNCIG 545 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D------~~I~iwd~~~--~~~~~~--------------dg~~l~sgs~Dg--~V~iWd~~~ 545 (686)
.+++.. ++.+.++|+.+ ..+..||..+ .-...+ +|+..++||.|| .+..||..+
T Consensus 457 ~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 457 PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCccc
Confidence 122222 45677777654 2466788775 111111 888888999888 677777766
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
.+
T Consensus 535 ~~ 536 (557)
T PHA02713 535 YE 536 (557)
T ss_pred cc
Confidence 54
No 374
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.68 E-value=4.8 Score=45.12 Aligned_cols=54 Identities=7% Similarity=-0.082 Sum_probs=36.2
Q ss_pred cEEEEecCCCcEEEEec---cC-------CcEEEEEEccCCC---EEEEEecCCcEEEEeCCCCeee
Q 005646 418 KVRIWAVLSCHVVDWVD---IR-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~~~---~~-------~~V~~v~~spdg~---~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
.|.-.|++|++++-.+. |. ....-+.+..+|+ .++.++.+|.+++.|-.+++++
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 46666888888762221 11 1122233335776 7788999999999999998875
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=0.31 Score=48.07 Aligned_cols=208 Identities=15% Similarity=0.162 Sum_probs=115.7
Q ss_pred eeecCCCccceee-----ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE-Eeec
Q 005646 208 RVRLNEEDAMFCS-----KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW-QVVE 281 (686)
Q Consensus 208 ~~s~~~~~l~~g~-----~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW-d~~~ 281 (686)
.|+++|.+|...- .-|.|-|||.... ....-++..|.-.-..|.+.+||+.|+.+. |-|... |.-.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~------fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR 191 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG------FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGR 191 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc------cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCc
Confidence 4677777665432 3367999987632 222356777887888899999999988764 456555 3211
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
- ++++....++.+.+.. ..-.+.+|....-.-+.-.|..++
T Consensus 192 ~----~lNldsMePSlvlld~-----------------------------------atG~liekh~Lp~~l~~lSiRHld 232 (366)
T COG3490 192 T----ELNLDSMEPSLVLLDA-----------------------------------ATGNLIEKHTLPASLRQLSIRHLD 232 (366)
T ss_pred c----ccchhhcCccEEEEec-----------------------------------cccchhhhccCchhhhhcceeeee
Confidence 1 1222222222111110 000111111111113455677788
Q ss_pred eeCCCEEEEEEC-CC-----cEEEEECCCCeeeeEee--------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 362 WSKNNYLLSASI-DK-----TVRLWRVGNDHCLRVFP--------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 362 ~s~~~~L~s~s~-Dg-----~V~iWd~~~~~~~~~~~--------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
.-++|.+..+.. .| --.+=....++.+..+. ..++|-+|+.+-.++-..+|.=..+..-+||..++
T Consensus 233 ~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 233 IGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred eCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 878774444432 11 12222223444444443 45789999998734444444444556789999999
Q ss_pred cEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 428 ~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
.++........ .-.-+....+++.+.+|.|.+|.-
T Consensus 313 ~vv~~a~l~da---aGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 313 AVVSEAALPDA---AGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred cEEeccccccc---ccceeccCceEEecCCceEEeccc
Confidence 99865544332 222345566888889999998853
No 376
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.63 E-value=6 Score=45.87 Aligned_cols=317 Identities=12% Similarity=0.079 Sum_probs=149.2
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
..++...+.+..+|.+.-.-..........+....++-+-..-..|+..-++| .|++|+.-|.=++-.+.+-.......
T Consensus 266 ~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~gsy~ 344 (1096)
T KOG1897|consen 266 DLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVGSYV 344 (1096)
T ss_pred cCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCCCchh
Confidence 34555667777777765554432222222211222333455556677766666 78889887766666554432110000
Q ss_pred cCCCCCcceEEeecCCCC--ceeeeeccccceeEEEeec-cCCceEEEeCCccccccCCCeEEeccCCCCeeEEE--eeC
Q 005646 290 IPEIDPSCIYFTVNHLSE--LKPLFMDKEKISILKSLRR-TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS--WSK 364 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~--~s~ 364 (686)
. .+.-..+-.+. ...+..+..+...+....+ ..++...++... ..+.+.....+.| -..++.+. +.+
T Consensus 345 ~------ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRng-i~I~e~A~i~l~G-ikg~w~lk~~v~~ 416 (1096)
T KOG1897|consen 345 V------ILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNG-IGIDELASIDLPG-IKGMWSLKSMVDE 416 (1096)
T ss_pred h------hhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecc-cccceeeEeecCC-ccceeEeeccccc
Confidence 0 00000000000 0111111112222222221 122222222211 1111222333444 34555665 333
Q ss_pred --CCEEEEEECCCcEEEEECCCC-eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEE
Q 005646 365 --NNYLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTA 441 (686)
Q Consensus 365 --~~~L~s~s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~ 441 (686)
+.+|+.+-.+.| ++..+... +.............+..+-..++.|+=... ..||+++-. +....|.... .++.
T Consensus 417 ~~d~ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~p~-~~ti 492 (1096)
T KOG1897|consen 417 NYDNYLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRPPG-KITI 492 (1096)
T ss_pred cCCcEEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccCCC-ceEE
Confidence 234444433333 33334322 111111123344445555445555444443 358888765 4444554433 3444
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC--CCC---eEEEEeCCCcEEEEe-
Q 005646 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--DSS---KVMVSCADSQVRILQ- 515 (686)
Q Consensus 442 v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~--~~~---~l~~~s~D~~I~iwd- 515 (686)
.+.+.+...+++++.++.+...++....+.... .+.-...|.|+.++|- +.+ .+++|..+..+.+.-
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~-------~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGGLREVS-------HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccceeeee-------eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 444445556777777777777777665533211 1122356999999874 334 788888777666542
Q ss_pred CCcc-------------------eeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 516 GPNV-------------------IGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 516 ~~~~-------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.++. .++..|..+|.++..||.+.-+.++..
T Consensus 566 ~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 566 LPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred CCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 1111 233347899999999999877765543
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.59 E-value=2.1 Score=44.15 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=83.6
Q ss_pred eeEEEeeCCCEEEEEECC----------CcEEEEECC-CCeeeeEee-CCCCeEEEEEeecCCCEEEEEEc-CCcEEEEe
Q 005646 357 ILDLSWSKNNYLLSASID----------KTVRLWRVG-NDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWA 423 (686)
Q Consensus 357 V~~l~~s~~~~L~s~s~D----------g~V~iWd~~-~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd 423 (686)
-+++...|+|.+..+.+. ..-.||-+. .+..++.+. +-..-+.|+|+| +++.|+.+-. .+.|.-|+
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEe
Confidence 346666677744444433 112455555 455555554 456668899999 8866666554 47788887
Q ss_pred cCC--Cc------EEEEeccCCcEEEEEEccCCCEEEEEecCC-cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEE
Q 005646 424 VLS--CH------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (686)
Q Consensus 424 ~~~--~~------~~~~~~~~~~V~~v~~spdg~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~f 494 (686)
+.. +. .+......+..-.++...+|.+.+++...| .|.+|+.. +++..... -+...+++++|
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~--------lP~~~~t~~~F 262 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK--------LPVKRPTNPAF 262 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE--------CCCCCCccceE
Confidence 752 11 112222345566788888998876555554 89999988 55443221 12245778888
Q ss_pred eCCCCCeEEEEeC
Q 005646 495 LPQDSSKVMVSCA 507 (686)
Q Consensus 495 sp~~~~~l~~~s~ 507 (686)
--.+.+.|.+++.
T Consensus 263 gG~~~~~L~iTs~ 275 (307)
T COG3386 263 GGPDLNTLYITSA 275 (307)
T ss_pred eCCCcCEEEEEec
Confidence 6645555555544
No 378
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.56 E-value=2.3 Score=45.16 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCCcEEEEECCCCeeeeEeeCC---CCeEEEEEeec-CCC-EEEEEEcCCcEEEEec-CCCc-----EEEEec-------
Q 005646 373 IDKTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPV-DDN-YFISGSIDGKVRIWAV-LSCH-----VVDWVD------- 434 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~h~---~~V~~v~fsp~-~~~-~l~sgs~Dg~V~iwd~-~~~~-----~~~~~~------- 434 (686)
...++.+||+.+.+.++++... ..+.-|.|... +.. -|+.+....+|..|-- ..++ ++....
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 3468999999999999999833 34556777541 223 3555555666665543 3332 222211
Q ss_pred ---c-------CCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCe-eeeeeeEE
Q 005646 435 ---I-------RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNH-LELDAEIC 477 (686)
Q Consensus 435 ---~-------~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~-~~~~~~~~ 477 (686)
. ..-|+.|.+|.|.++|.+++. .|.|+.||+.+.. ..+..++.
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~ 354 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVF 354 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEE
Confidence 1 345899999999999988765 8999999998743 33333333
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.75 Score=45.49 Aligned_cols=190 Identities=13% Similarity=0.222 Sum_probs=104.4
Q ss_pred cceeeccce-EEEEEcCCccc-cccccccCceecccCCceEEEEEeeCCCEEEEEeCC-----CcEEEEEeecCeeeeee
Q 005646 216 AMFCSKVQR-VKVYHCKKRSK-ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD-----GVVRLWQVVEDERLTEV 288 (686)
Q Consensus 216 l~~g~~d~~-v~vw~~~~~~~-~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----g~I~vWd~~~~~~~~~~ 288 (686)
++.+-..|+ ..|+|...... ........+.|.+|. .|||||.+|...-.| |.|-|||...+-
T Consensus 83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~f----- 151 (366)
T COG3490 83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGF----- 151 (366)
T ss_pred EEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEeccccc-----
Confidence 344444444 34566544332 122223345567775 699999998765333 788899986432
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-E
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y 367 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~ 367 (686)
..+-++..|.-.-..+.|.+|| .
T Consensus 152 --------------------------------------------------------qrvgE~~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 152 --------------------------------------------------------QRVGEFSTHGIGPHEVTLMADGRT 175 (366)
T ss_pred --------------------------------------------------------ceecccccCCcCcceeEEecCCcE
Confidence 1233444455555667777777 4
Q ss_pred EEEEE------------------CCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcCCc-----E
Q 005646 368 LLSAS------------------IDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGK-----V 419 (686)
Q Consensus 368 L~s~s------------------~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~-----V 419 (686)
|+.+. +.-.+.+-|..++..+.... +...|..++..+ ++..++-+-..|. -
T Consensus 176 lvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~pp 254 (366)
T COG3490 176 LVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPP 254 (366)
T ss_pred EEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCc
Confidence 43332 22345555655665554332 455677777776 6665554433221 0
Q ss_pred EEEecCCCcEEEEec--------cCCcEEEEEEccCCCEEEEEecCC-cEEEEeCCCCeeeee
Q 005646 420 RIWAVLSCHVVDWVD--------IRQIVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELD 473 (686)
Q Consensus 420 ~iwd~~~~~~~~~~~--------~~~~V~~v~~spdg~~l~~gs~dg-~i~iwd~~~~~~~~~ 473 (686)
.+=-...++.+...+ ....|-+|+.+.+..+++..+-.| ...+||..++.....
T Consensus 255 Lvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 255 LVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred ceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 000112223333322 234577888887666666666555 467999999887643
No 380
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.29 E-value=0.05 Score=38.56 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=29.6
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
...|.+++|+|...+||.|..||.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 356999999999999999999999999998 554
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.74 Score=49.27 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=65.4
Q ss_pred EEEECCCcEEEEECCCCee--eeEee-----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEE
Q 005646 369 LSASIDKTVRLWRVGNDHC--LRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (686)
Q Consensus 369 ~s~s~Dg~V~iWd~~~~~~--~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~ 440 (686)
+.|-.|..|.-||.+-... +..-. ......|.+-. ...+++.||.+|.||+||--..+.. .+.+...+|.
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK 475 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence 3455678888899873321 21111 23445555543 5679999999999999998443333 4567788999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
.|..+.||++|++. .+..+.+-++.
T Consensus 476 hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 476 HVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred eEEeeccCcEEEEe-cccEEEEEEEe
Confidence 99999999988754 56677777754
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.17 E-value=0.027 Score=53.61 Aligned_cols=101 Identities=21% Similarity=0.167 Sum_probs=61.8
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC-cEEEEe-c-cCCcEEEEE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWV-D-IRQIVTAVC 443 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~-~~~~~~-~-~~~~V~~v~ 443 (686)
.|..-+.|+.|+-++++..+.... ....+.+..--+....-+++|+.+|.|.+|...-. ...... . .....+.|.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~r--se~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCR--SERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hhccccCCcccccchhhhhhhhhh--hhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 455667788998888765432211 11222223223335678999999999999988722 111111 1 122223344
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
-..++.+..+++.+|.||.|++.-++
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred cccccceeEEeccCCceeeeccccCc
Confidence 44566788999999999999987655
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.16 E-value=5.9 Score=42.91 Aligned_cols=200 Identities=16% Similarity=0.134 Sum_probs=94.2
Q ss_pred ceEEEEEeeCCCEEEEE-eCC----CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe-e
Q 005646 252 SILTMKFSPDGQYLASA-GDD----GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL-R 325 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasg-s~D----g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 325 (686)
.+..++++|||++||-+ +.. .+|++.|+.+++.+...- ...... .+.|..++...+..- .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~-------------~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFS-------------SVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESE-------------EEEECTTSSEEEEEECS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccc-------------eEEEeCCCCEEEEEEeC
Confidence 34467899999998865 333 469999999997654321 100011 122333322221111 1
Q ss_pred ccCCc-----eEEEeCCccccccCCCeEEeccCCCC--eeEEEeeCCC-EEE-EEECCC---cEEEEECCCC-----eee
Q 005646 326 RTSES-----ACVVFPPKVFRILEKPLHEFHGHSGE--ILDLSWSKNN-YLL-SASIDK---TVRLWRVGND-----HCL 388 (686)
Q Consensus 326 ~~~~~-----~~~~~~~~~~~~~~~~~~~l~~h~~~--V~~l~~s~~~-~L~-s~s~Dg---~V~iWd~~~~-----~~~ 388 (686)
..... ...++-.++..-.......+...... ...+..++++ +|+ ...... .+.+.++..+ ...
T Consensus 191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred cccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 11010 11111111110111112333333322 5678889998 444 344333 4778888764 333
Q ss_pred eEeeCCCCeEEEEEeecCCCEEEEEE---cCCcEEEEecCCCcE----EEEeccCCcEEEEEEccCCCEEEEEec-CC--
Q 005646 389 RVFPHSNYVTCVHFNPVDDNYFISGS---IDGKVRIWAVLSCHV----VDWVDIRQIVTAVCYRPDGQGGIVGSM-MG-- 458 (686)
Q Consensus 389 ~~~~h~~~V~~v~fsp~~~~~l~sgs---~Dg~V~iwd~~~~~~----~~~~~~~~~V~~v~~spdg~~l~~gs~-dg-- 458 (686)
........+....-+. ++.+++... .++.|.-.++.+... ..+..+...+.-..+...+.+|+.... ++
T Consensus 271 ~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp EEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE
T ss_pred EEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc
Confidence 4444555555544444 444554443 246777778876652 244555554333344444555555433 33
Q ss_pred cEEEEeCC
Q 005646 459 DCRFYNVS 466 (686)
Q Consensus 459 ~i~iwd~~ 466 (686)
.|+++++.
T Consensus 350 ~l~v~~~~ 357 (414)
T PF02897_consen 350 RLRVYDLD 357 (414)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 48889987
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.35 Score=51.66 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=89.5
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCC-------CEEEEEEcCCcEEEEecCCCc--EEEEec---
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDD-------NYFISGSIDGKVRIWAVLSCH--VVDWVD--- 434 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~-------~~l~sgs~Dg~V~iwd~~~~~--~~~~~~--- 434 (686)
+|.++.....++-.|++.|+.+..+.....|+-+.+.| +. ..-+.|-.|..|.-||.+-.. .+.+..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 55667777889999999999999999555588888888 43 223456678889999998432 222222
Q ss_pred --cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 435 --IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 435 --~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
......|++-..+| ++++|+.+|.||+||--.... . ....+-..+|+.+..+. ++++++.++.
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~A--K------TAlPgLG~~I~hVdvta-dGKwil~Tc~ 491 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRA--K------TALPGLGDAIKHVDVTA-DGKWILATCK 491 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhh--h------hcccccCCceeeEEeec-cCcEEEEecc
Confidence 23345666666677 899999999999999632111 1 11233457899999998 6676666654
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.03 E-value=1.2 Score=44.65 Aligned_cols=148 Identities=19% Similarity=0.143 Sum_probs=85.1
Q ss_pred CeeEEEeeCCC-EEEEEE-CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe-cCCCcE---
Q 005646 356 EILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA-VLSCHV--- 429 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s-~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd-~~~~~~--- 429 (686)
.+...++++++ .++... .++.-.||-...+...........++.-.|.+ ++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 68899999999 554444 33444444444444333333445788889999 777777777677777773 333322
Q ss_pred -EEEeccCCcEEEEEEccCCCEEEEEe---cCCcEEEEeCCCCeee-eeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 430 -VDWVDIRQIVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLE-LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 430 -~~~~~~~~~V~~v~~spdg~~l~~gs---~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
+.+......|+++.++|||..++.-. .++.|.+--+....-. .................++.+.|.+ +..+++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~V~ 182 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLVVL 182 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEEEE
Confidence 22332333899999999999988765 3567777655321111 0000001111112346788999998 3344333
Q ss_pred E
Q 005646 505 S 505 (686)
Q Consensus 505 ~ 505 (686)
+
T Consensus 183 ~ 183 (253)
T PF10647_consen 183 G 183 (253)
T ss_pred e
Confidence 3
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.23 Score=57.24 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=72.5
Q ss_pred EEEEEECCCcEEEEECCCCee--eeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-ccCCc---EE
Q 005646 367 YLLSASIDKTVRLWRVGNDHC--LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQI---VT 440 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~--~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~~---V~ 440 (686)
.++.|+..|.|...|+...-+ .+-..-.++|++++|+. ++..++.|-.+|.|.+||+..+++...+ .+..+ |.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 788888899999988876522 22223578999999998 9999999999999999999998776443 33333 44
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
.+.+..++..++++...|. +|.+.
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEEE
Confidence 4555667777888877776 56553
No 387
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.80 E-value=0.64 Score=52.47 Aligned_cols=170 Identities=14% Similarity=0.155 Sum_probs=103.9
Q ss_pred EEEEEECC------CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC------CcEEEEecCCCcEEEE
Q 005646 367 YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVDW 432 (686)
Q Consensus 367 ~L~s~s~D------g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D------g~V~iwd~~~~~~~~~ 432 (686)
+++.|+.+ .++..+|..++....... ....-.+++.. ++.++++|+.| .++..||.++.+-...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 66667666 468889988885544433 44445666665 57889999999 3577888888773332
Q ss_pred eccCCcEEEEEE-ccCCCEEEEEecCCc-----EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 433 VDIRQIVTAVCY-RPDGQGGIVGSMMGD-----CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 433 ~~~~~~V~~v~~-spdg~~l~~gs~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
......-..+.. .-+|...|+|+.||. +-.||..+++......+. ....+.....-++.+.++|+
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---------~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---------TRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC---------cceeeeEEEEECCEEEEEcC
Confidence 222222222222 227888999999875 888898887765433221 12333444443677888888
Q ss_pred CCC------cEEEEeCCcce---------------eEcCCCCEEEEEeCCCc-----EEEEeCCCCC
Q 005646 507 ADS------QVRILQGPNVI---------------GKYKDGKHIVSAGEDSN-----VYMWNCIGHE 547 (686)
Q Consensus 507 ~D~------~I~iwd~~~~~---------------~~~~dg~~l~sgs~Dg~-----V~iWd~~~~~ 547 (686)
.++ ++..||..+.. ...-++...+.||.|+. |..||..+.+
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 654 45667755421 11117788888887763 6667766644
No 388
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.79 E-value=6.4 Score=41.45 Aligned_cols=234 Identities=12% Similarity=0.104 Sum_probs=94.9
Q ss_pred eeeecCCCccceee-ccceEEEEEcCCccccccccccCceecccC-CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 207 ERVRLNEEDAMFCS-KVQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 207 ~~~s~~~~~l~~g~-~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
.+|..+|+.|+.++ .++.-.+|.++-...+...+.. +. .......++|+.+.|+-......|+--|+.+.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd------g~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD------GPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc------CCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 35667787666544 4665555554433333333222 22 1222456678888876665556788888888876
Q ss_pred eeeeccCCCCCcceEEeecCCCC-ceeeeeccccceeEEEee-------ccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSE-LKPLFMDKEKISILKSLR-------RTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
...+..++.-.....+..+.... +..+.........+.... ......++..+ +.......+..-...
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id-----l~tG~~~~v~~~~~w 189 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID-----LKTGERKVVFEDTDW 189 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE-----TTT--EEEEEEESS-
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE-----CCCCceeEEEecCcc
Confidence 55555554322222332222111 111111110000000000 00001111111 112233444445567
Q ss_pred eeEEEeeCCC-E-EEEEEC---CC-cEEEEECCCC-eeeeEe-eC--CCCeEEEEEeecCCCEEEEEE-----cCCcEEE
Q 005646 357 ILDLSWSKNN-Y-LLSASI---DK-TVRLWRVGND-HCLRVF-PH--SNYVTCVHFNPVDDNYFISGS-----IDGKVRI 421 (686)
Q Consensus 357 V~~l~~s~~~-~-L~s~s~---Dg-~V~iWd~~~~-~~~~~~-~h--~~~V~~v~fsp~~~~~l~sgs-----~Dg~V~i 421 (686)
+..+.|+|.. . |.-|-. +. .-|||-+++. ...+.+ .+ ...+..=-|.| +|..|.--+ .+..|.-
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEEE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEEEe
Confidence 7889999987 4 444432 33 2477766532 222222 22 23344456777 666544322 2345777
Q ss_pred EecCCCcEEEEeccCCcEEEEEEccCCCEEEE
Q 005646 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453 (686)
Q Consensus 422 wd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~ 453 (686)
+|+.+++...+.... ....+-.++||++++-
T Consensus 269 ~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 269 YDPDTGERRRLMEMP-WCSHFMSSPDGKLFVG 299 (386)
T ss_dssp E-TTT--EEEEEEE--SEEEEEE-TTSSEEEE
T ss_pred eCCCCCCceEEEeCC-ceeeeEEcCCCCEEEe
Confidence 788887654433333 3456777889988765
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.68 E-value=0.74 Score=50.06 Aligned_cols=112 Identities=16% Similarity=0.225 Sum_probs=73.4
Q ss_pred CCCCeeEEEeeCCC-----EEEEEECCCcEEEEECC-----CCeeeeEe--e--CCC--CeEEEEEeecCCCEEEEEEcC
Q 005646 353 HSGEILDLSWSKNN-----YLLSASIDKTVRLWRVG-----NDHCLRVF--P--HSN--YVTCVHFNPVDDNYFISGSID 416 (686)
Q Consensus 353 h~~~V~~l~~s~~~-----~L~s~s~Dg~V~iWd~~-----~~~~~~~~--~--h~~--~V~~v~fsp~~~~~l~sgs~D 416 (686)
.-..|..+.|.|-+ .|++....+.|.||.+. +.+.+... . ..- --..+.|+| ....|+.-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecC
Confidence 34568899999863 67777888999999985 22222211 1 111 224567999 77777666555
Q ss_pred CcEEEEecC--CCcEEEEeccCCcEEEEEEccCCCEEEEEecC-CcEEEEeC
Q 005646 417 GKVRIWAVL--SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-GDCRFYNV 465 (686)
Q Consensus 417 g~V~iwd~~--~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~d-g~i~iwd~ 465 (686)
..=.+++++ +.++..-+...+.|.|.||.+||+.|+++-.. =.-+|||-
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 444456665 34455555778889999999999998876332 23567764
No 390
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.67 E-value=4.7 Score=46.60 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=28.7
Q ss_pred cCCCCeeEEEeeCCC----EEEEEECCCcEEEEECCCC
Q 005646 352 GHSGEILDLSWSKNN----YLLSASIDKTVRLWRVGND 385 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~----~L~s~s~Dg~V~iWd~~~~ 385 (686)
.+...|..+.|+|.+ +|+.-..|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 456789999999963 8999999999999999753
No 391
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.55 E-value=0.13 Score=36.52 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=29.8
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
.....|..++|+|...++|.++.+|.|.+|.++
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 445679999999999999999999999999984
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.47 E-value=5.8 Score=39.52 Aligned_cols=134 Identities=9% Similarity=0.098 Sum_probs=84.7
Q ss_pred CCeeEEEeeCCC-EEEEEECCC--cEEEEECCCCeeeeEeeCC--CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 355 GEILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVFPHS--NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~Dg--~V~iWd~~~~~~~~~~~h~--~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
.....+.|..++ ++-+.+.-| .|+.+|+.+++.+....-. -.--.++.. ++.++...=.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 445678887777 666776655 7999999999987776622 233444444 445555556789999999999988
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
+..+.....=..++ .||+.|+.+.....++++|..+-+.....++...+ .....++.+.+.
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g---~pv~~LNELE~i 183 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG---RPVSNLNELEYI 183 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT---EE---EEEEEEE
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC---EECCCcEeEEEE
Confidence 87777766667777 57888888888889999998876655443333221 123345556655
No 393
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.28 E-value=5.4 Score=46.55 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=74.1
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeEeeCCCCe---------EEEEEee---------------cCCCEEEEEEcCCcEE
Q 005646 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYV---------TCVHFNP---------------VDDNYFISGSIDGKVR 420 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V---------~~v~fsp---------------~~~~~l~sgs~Dg~V~ 420 (686)
++.|+.++.++.|.-.|..+++.+..+.....+ ..+.+.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457788888899999999999998888633221 1233321 1345788899999999
Q ss_pred EEecCCCcEEEEeccCCcEE-------------EEEEcc--CCCEEEEEec----------CCcEEEEeCCCCeeeeeee
Q 005646 421 IWAVLSCHVVDWVDIRQIVT-------------AVCYRP--DGQGGIVGSM----------MGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 421 iwd~~~~~~~~~~~~~~~V~-------------~v~~sp--dg~~l~~gs~----------dg~i~iwd~~~~~~~~~~~ 475 (686)
-.|..+++.+..+...+.|. .+.-.| .+..+++|+. +|.|+-||+.++++.....
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999885444333221 111222 2345666643 6889999999999876543
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.23 E-value=0.13 Score=49.11 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=66.3
Q ss_pred EEEEEECCCcEEEEECCCCeee-e-EeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC--CcEEEE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCL-R-VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR--QIVTAV 442 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~-~-~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~--~~V~~v 442 (686)
.|+.|+.+|.|.+|........ . ...-...|-++--.-.++.+..+++.||.||.|++.-.+.+....+. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 7999999999999988622111 1 11123344444333335668999999999999999988888665543 344555
Q ss_pred EEccCCCEEEEE--ecCCcEEEEeCCC
Q 005646 443 CYRPDGQGGIVG--SMMGDCRFYNVSD 467 (686)
Q Consensus 443 ~~spdg~~l~~g--s~dg~i~iwd~~~ 467 (686)
.....++.++.+ +.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 555555666666 6666777777643
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.21 E-value=4.4 Score=39.14 Aligned_cols=142 Identities=9% Similarity=0.126 Sum_probs=85.0
Q ss_pred CeeEEEeeCCCEEEEEECC----------CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe--
Q 005646 356 EILDLSWSKNNYLLSASID----------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA-- 423 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~D----------g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd-- 423 (686)
..++-..+|+|....|.+. |.++.|-.. ++....+..-+--+.++|+.....+.++-+.+-.|.-||
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 4456667889855655543 334444322 222222223334467888863344556677788887787
Q ss_pred cCCCcEE------EEecc----CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 424 VLSCHVV------DWVDI----RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 424 ~~~~~~~------~~~~~----~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
..++.+. .+... ....-.+++..+|++.++.-..|+|...|..++++.++..+. ...|++.+
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------t~qitscc 260 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------TPQITSCC 260 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------CCceEEEE
Confidence 5565432 22110 111234566778888888888899999999999987754432 35699999
Q ss_pred EeCCCCCeEEEEe
Q 005646 494 FLPQDSSKVMVSC 506 (686)
Q Consensus 494 fsp~~~~~l~~~s 506 (686)
|--.+-..+.+++
T Consensus 261 FgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 261 FGGKNLDILYVTT 273 (310)
T ss_pred ecCCCccEEEEEe
Confidence 9764434444443
No 396
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=0.26 Score=57.05 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=92.1
Q ss_pred CeeEEEeeCCC---EEEEEECCCcEEEEECCCCe--------eeeEe----eCCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGNDH--------CLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 356 ~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~--------~~~~~----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
.|..+...+|+ .++..+.+-.|..||+++-. +++.- .....+.++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666665 34445556688999987432 11111 14466788999996666778888899999
Q ss_pred EEecCCCc-EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 421 IWAVLSCH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 421 iwd~~~~~-~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+..+.-.. .+........+++++|+|.|+.+++|-..|++.-|...-.. .. .++........+|.++.|..
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei---k~--~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI---KS--EIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccce---ee--cccCCCcCCCcceeEEEEec
Confidence 98776433 33445667789999999999999999999999998754321 11 11111222257799999987
No 397
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.91 E-value=11 Score=40.59 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=44.0
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
+|..-+.||++.+++-+.-.....+..---...+.|.| ..+.|++++.+..|.-|..
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecH
Confidence 88899999999999987766555555333334577888 7788999998989988865
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=0.33 Score=56.06 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=68.7
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcE--EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
-...++.|+..|.|-..|+...-. ..-.....+|++++|+.+|+.++.|-.+|.|.+||+..++....... ..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e-----~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE-----HG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee-----cC
Confidence 456788889899999999876422 22223467899999999999999999999999999998776542211 11
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
++...|..+.+.. +...++++...|. +|.
T Consensus 173 ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 173 APVTGVIFVGRTS-QNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CccceEEEEEEeC-CCcEEEEccCCCc--eEE
Confidence 2222233333444 3446666666665 554
No 399
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.68 E-value=5 Score=42.47 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=56.0
Q ss_pred EEEee-CCC--EEEEEECCCcEEEEE--CCCCeeeeEee-CCCCeEE-EEEeecCCCEEEEEEcC----CcEEEEecC-C
Q 005646 359 DLSWS-KNN--YLLSASIDKTVRLWR--VGNDHCLRVFP-HSNYVTC-VHFNPVDDNYFISGSID----GKVRIWAVL-S 426 (686)
Q Consensus 359 ~l~~s-~~~--~L~s~s~Dg~V~iWd--~~~~~~~~~~~-h~~~V~~-v~fsp~~~~~l~sgs~D----g~V~iwd~~-~ 426 (686)
...+. +++ +|.....||.-+|+- ...+... .+. ..-.|+. +.+++..+.+++++..+ ..|..-++. .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 44443 555 666666887666554 4444433 333 5556755 67777444555566653 356666777 5
Q ss_pred CcEEEEeccCCcEEEEEEccCCCEEEEEe
Q 005646 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~spdg~~l~~gs 455 (686)
+....+......-..+.|+|+|++++..+
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 66655554433336899999999988654
No 400
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.53 E-value=2.9 Score=36.83 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=76.2
Q ss_pred EeeCCC-EEEEEECCCcEEEEECCC--------CeeeeEeeCCCCeEEEEEeec----CCCEEEEEEcCCcEEEEecCCC
Q 005646 361 SWSKNN-YLLSASIDKTVRLWRVGN--------DHCLRVFPHSNYVTCVHFNPV----DDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 361 ~~s~~~-~L~s~s~Dg~V~iWd~~~--------~~~~~~~~h~~~V~~v~fsp~----~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
.|.... .|+.++.-+.|.|++... ...+..+.-+..|++|+-.|- ..+.|+.|+. ..|..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 343444 688888889999998763 345677778888999977662 3567777774 57999999999
Q ss_pred cEEEEeccCCcEEEEEEcc----CCCEEEEEecCCcEEEEeCCCCe
Q 005646 428 HVVDWVDIRQIVTAVCYRP----DGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 428 ~~~~~~~~~~~V~~v~~sp----dg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
.-+.+......|.++.+-. +...+++| .+..|.=||.....
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 8888888888899888754 23345554 45566667765544
No 401
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.53 E-value=19 Score=42.05 Aligned_cols=184 Identities=14% Similarity=0.066 Sum_probs=106.9
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeec--CCC---EEEEEEcCCcEEEE-ecCC
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPV--DDN---YFISGSIDGKVRIW-AVLS 426 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~--~~~---~l~sgs~Dg~V~iw-d~~~ 426 (686)
.++..+.+.+. .++.++.++.+...++..+....... ....|.|+.++|. +.+ +++.|..+..+.+. -..+
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 33444444444 66667767777777776665333333 4678999999984 334 78888887765554 3334
Q ss_pred CcEEEEe--c---cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCe
Q 005646 427 CHVVDWV--D---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 427 ~~~~~~~--~---~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
...+... . .+..|.-.++--|..+|.++..||.+.-|-+.....+.... .+..-...++.=-.|+. .+..
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~----Kk~~lGt~P~~Lr~f~s-k~~t 643 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDR----KKVTLGTQPISLRTFSS-KSRT 643 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccc----cccccCCCCcEEEEEee-CCce
Confidence 4333222 2 22334455566678899999999998877765544332111 11111234555556666 5555
Q ss_pred EEEEeCCCcEEEEeCCcceeEcC----------------CCCEEEEEeCCCcEEEEeCCC
Q 005646 502 VMVSCADSQVRILQGPNVIGKYK----------------DGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 502 l~~~s~D~~I~iwd~~~~~~~~~----------------dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
-+.+..|.-.-+|....-+.++| -...|+++.. +.+++-.++.
T Consensus 644 ~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~ 702 (1096)
T KOG1897|consen 644 AVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDE 702 (1096)
T ss_pred EEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecC-CceEEEEecc
Confidence 56666666666665554444444 2345665543 4577777665
No 402
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.53 E-value=6.9 Score=42.02 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=55.2
Q ss_pred eeeecCCCccceeeccceEEE---EEcCCcc--ccccccccCceecccC-CceEEEEEee-----------CCCEEEEEe
Q 005646 207 ERVRLNEEDAMFCSKVQRVKV---YHCKKRS--KELSALYKGQEIQAHD-GSILTMKFSP-----------DGQYLASAG 269 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~v---w~~~~~~--~~~~~~~~~~~l~~H~-~~I~~l~fsp-----------dg~~Lasgs 269 (686)
.+++++++.++.+..+.-+.+ |+..... .......-...+..-. ..|+++.+-| |...++.|-
T Consensus 7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ 86 (415)
T PF14655_consen 7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT 86 (415)
T ss_pred EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence 467788888888877776655 4332111 1111111111222211 5677777654 356899999
Q ss_pred CCCcEEEEEeecCeeeeeeccCCCCCcceEEe
Q 005646 270 DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFT 301 (686)
Q Consensus 270 ~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~ 301 (686)
.+|.|++|.. +|..+....+++.++..+.+.
T Consensus 87 ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 87 SSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred cccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 9999999985 666666666665555544443
No 403
>PHA02713 hypothetical protein; Provisional
Probab=93.37 E-value=4.8 Score=45.51 Aligned_cols=140 Identities=13% Similarity=0.046 Sum_probs=73.5
Q ss_pred EEEEEECCC-----cEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC----------------------
Q 005646 367 YLLSASIDK-----TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG---------------------- 417 (686)
Q Consensus 367 ~L~s~s~Dg-----~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg---------------------- 417 (686)
..+.|+.++ +|..||..+.+....-. +...-.+++. - ++.+.+.|+.++
T Consensus 354 IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~-~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (557)
T PHA02713 354 IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV-L-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS 431 (557)
T ss_pred EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE-E-CCEEEEEeCCCccccccccccccccccccccccc
Confidence 555666543 48889988775443222 2111112221 1 677888887653
Q ss_pred -cEEEEecCCCcEEEEeccCCc-EEEEEEccCCCEEEEEecCC------cEEEEeCCC-CeeeeeeeEEeeccccCCCCC
Q 005646 418 -KVRIWAVLSCHVVDWVDIRQI-VTAVCYRPDGQGGIVGSMMG------DCRFYNVSD-NHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 418 -~V~iwd~~~~~~~~~~~~~~~-V~~v~~spdg~~l~~gs~dg------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 488 (686)
.|..||..+.+-........+ ..+-+..-+|+..++|+.++ .+..||..+ ++......+.. +..
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~------~r~- 504 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES------RLS- 504 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc------ccc-
Confidence 467788777653322221111 11112233677777787642 467899987 56554332211 111
Q ss_pred eEEEEEeCCCCCeEEEEeCCC--cEEEEeCC
Q 005646 489 ITGFQFLPQDSSKVMVSCADS--QVRILQGP 517 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~--~I~iwd~~ 517 (686)
..+++.. ++.+.++|+.|+ .+..||..
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 1222222 568888888887 55555554
No 404
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.31 E-value=0.013 Score=65.59 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=31.4
Q ss_pred cceEEEEEcCCccccccccccCceecccCCceEEEEEe---eCCCEEEEEeCCCcEEEEEeecC
Q 005646 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFS---PDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs---pdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
-|...||+++-...++..-........-...+.-+.|. ++.-|+..+-.++.|++-.+.+.
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra 215 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA 215 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH
Confidence 45677888764333322221122222222333444444 35567777777788887776543
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=0.87 Score=53.03 Aligned_cols=138 Identities=8% Similarity=-0.021 Sum_probs=88.2
Q ss_pred CcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeee---eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 437 QIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLEL---DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
-++..+...+|+...++... +-.|..||+..-.... ...++.+........-..++.|.|.-....++...|..|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 44566666778776555433 3379999987543322 122222222222334467788999666778888899999
Q ss_pred EEEeC---------------CcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCC
Q 005646 512 RILQG---------------PNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGL 576 (686)
Q Consensus 512 ~iwd~---------------~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~ 576 (686)
++..+ .++++|+|.|+.++.|-..|++.-|...-... +.+..........+..+.|-++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik------~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK------SEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee------ecccCCCcCCCcceeEEEEecc
Confidence 98753 35789999999999999999999998765431 1111111111345778888877
Q ss_pred cCCC
Q 005646 577 KCGN 580 (686)
Q Consensus 577 ~~~~ 580 (686)
+.|-
T Consensus 255 ~efl 258 (1405)
T KOG3630|consen 255 QEFL 258 (1405)
T ss_pred eeEE
Confidence 6544
No 406
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.73 E-value=9.9 Score=42.64 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=69.2
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeEeeCCC--CeEE----------EEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSN--YVTC----------VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~--~V~~----------v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
++.|+.++.++.|.-.|..+++.+..+.... .+.. +++ .+..++.++.|+.|.-.|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4577778888899999999999988876321 1211 222 235677888899999999999998743
Q ss_pred eccCCc--EEEEEEcc---CCCEEEEEec------CCcEEEEeCCCCeeeeee
Q 005646 433 VDIRQI--VTAVCYRP---DGQGGIVGSM------MGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 433 ~~~~~~--V~~v~~sp---dg~~l~~gs~------dg~i~iwd~~~~~~~~~~ 474 (686)
...... -..+.-+| ++ .++++.. +|.|+-+|..+++.....
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 332110 00111122 44 4555542 689999999999876543
No 407
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.67 E-value=11 Score=38.84 Aligned_cols=167 Identities=14% Similarity=0.201 Sum_probs=0.0
Q ss_pred EEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCC
Q 005646 226 KVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305 (686)
Q Consensus 226 ~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (686)
.||............... -.+.+..+..++||+|++++..-....-|+--...
T Consensus 125 ~iy~T~DgG~tW~~~~~~-----~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---------------------- 177 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVVSE-----TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---------------------- 177 (302)
T ss_dssp -EEEESSTTSSEEEEE-S---------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----------------------
T ss_pred cEEEeCCCCCCeeEcccC-----CcceeEeEEECCCCcEEEEECcccEEEEecCCCcc----------------------
Q ss_pred CCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEE-CCC
Q 005646 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWR-VGN 384 (686)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd-~~~ 384 (686)
-...-..-...|..|.|.|++.|......+.|+.=+ ...
T Consensus 178 ----------------------------------------w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 178 ----------------------------------------WQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD 217 (302)
T ss_dssp -----------------------------------------EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE
T ss_pred ----------------------------------------ceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCC
Q ss_pred CeeeeE----eeCCCC-eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc----CCcEEEEEEccCCCEEEEEe
Q 005646 385 DHCLRV----FPHSNY-VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI----RQIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 385 ~~~~~~----~~h~~~-V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~----~~~V~~v~~spdg~~l~~gs 455 (686)
...... +...+. +..++|.+ +...+++|+.. .-+.....++.-..... ...++.|.|.++.+.++.|
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~G--~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGSG--TLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESS-SS-EEEEESTT---EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred ccccccccCCcccCceeeEEEEecC-CCCEEEEeCCc--cEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Q ss_pred cCCcEEEE
Q 005646 456 MMGDCRFY 463 (686)
Q Consensus 456 ~dg~i~iw 463 (686)
.+|.+.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.61 E-value=4.9 Score=43.24 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=87.2
Q ss_pred CCCEEEEEEcCCcEEEEecCCCc-----EEEEeccCCcEEEEEEcc-----CCCEEEEEecCCcEEEEeCCCCeee----
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCH-----VVDWVDIRQIVTAVCYRP-----DGQGGIVGSMMGDCRFYNVSDNHLE---- 471 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~-----~~~~~~~~~~V~~v~~sp-----dg~~l~~gs~dg~i~iwd~~~~~~~---- 471 (686)
+.+.+++|+..|.+|||+..... ++-......+|..+..-+ +...||+ =.-..+.||.+....-.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 45799999999999999986543 445556778888887653 2335555 46678888887321100
Q ss_pred --eeeeEEeeccccCCCCCeEEEEEeCC---C-CCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEE
Q 005646 472 --LDAEICVHSKKKAPCKRITGFQFLPQ---D-SSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVS 531 (686)
Q Consensus 472 --~~~~~~~~~~~~~~~~~I~~l~fsp~---~-~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~s 531 (686)
........... ......+..-|- . ...+.+-+-||.+.+++... .+.+.+.-..|++
T Consensus 115 ~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 115 NQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEE
Confidence 11111111111 111233333332 2 46889999999999998543 3566678889999
Q ss_pred EeCCCcEEEEeCCC
Q 005646 532 AGEDSNVYMWNCIG 545 (686)
Q Consensus 532 gs~Dg~V~iWd~~~ 545 (686)
++.+..|.-|....
T Consensus 192 ~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 192 ASSSWTLECYKYQD 205 (418)
T ss_pred ecCceeEEEecHHH
Confidence 99999999998744
No 409
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.20 E-value=7.4 Score=37.36 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=42.4
Q ss_pred cceeeecCC-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC
Q 005646 205 EGERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD 270 (686)
Q Consensus 205 ~~~~~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 270 (686)
|...+...+ +.|+.+.....|.+|++.....++.. .|. --+.|..|.++..|+||+|-=+
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~-----~F~-Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLC-----TFS-TVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeE-----EEc-chhheeEEEeccccceEEEEEe
Confidence 556666667 77777788889999998843333221 222 2378999999999999999643
No 410
>PHA03098 kelch-like protein; Provisional
Probab=92.20 E-value=5.3 Score=45.02 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=55.2
Q ss_pred EEEEEECC-----CcEEEEECCCCeeeeEe--eCCCCeEEEEEeecCCCEEEEEEcC------CcEEEEecCCCcEEEEe
Q 005646 367 YLLSASID-----KTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~~~~~~--~h~~~V~~v~fsp~~~~~l~sgs~D------g~V~iwd~~~~~~~~~~ 433 (686)
.++.|+.+ ..+..||..+++....- .+...-.+++.. ++.+++.|+.+ ..+..||..+.+-....
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 55556654 35778888776543322 222211222222 67777777742 35788998876533222
Q ss_pred ccCCcE-EEEEEccCCCEEEEEecCC--------cEEEEeCCCCeeee
Q 005646 434 DIRQIV-TAVCYRPDGQGGIVGSMMG--------DCRFYNVSDNHLEL 472 (686)
Q Consensus 434 ~~~~~V-~~v~~spdg~~l~~gs~dg--------~i~iwd~~~~~~~~ 472 (686)
....+. ...+...+++.++.|+.++ .+.+||..+++...
T Consensus 423 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 470 (534)
T PHA03098 423 PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE 470 (534)
T ss_pred CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence 211111 1112223666777776432 38889988776543
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.00 E-value=4 Score=43.52 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=56.0
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCCC-----e---eeeEeeC-----CCCeEEEEEeecCCCEEEEEEcC------
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGND-----H---CLRVFPH-----SNYVTCVHFNPVDDNYFISGSID------ 416 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~-----~---~~~~~~h-----~~~V~~v~fsp~~~~~l~sgs~D------ 416 (686)
....|++.+++ |+.+......++.|.... + .+..+.. ......++|.| ++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 45778888888 444555544444454321 1 1122221 34477899999 88876655521
Q ss_pred -------------CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEe
Q 005646 417 -------------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 417 -------------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs 455 (686)
|.|.-++..+++...+...-.....++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 445555555554433322233356899999998876643
No 412
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=8.6 Score=40.77 Aligned_cols=153 Identities=15% Similarity=0.283 Sum_probs=92.9
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
+.++.+...|.+.=|-.+....+....+. ...+++|.+|+||+|.+.||.--.|++|.+.+....+.....
T Consensus 34 NkqlfavrSggatgvvvkgpndDVpiSfd----m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~----- 104 (657)
T KOG2377|consen 34 NKQLFAVRSGGATGVVVKGPNDDVPISFD----MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY----- 104 (657)
T ss_pred cceEEEEecCCeeEEEEeCCCCCCCceee----ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH-----
Confidence 55666667777777776655443322211 235679999999999999999999999999988544321111
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEEC
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASI 373 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~ 373 (686)
.++.+..+..|....|+.+..+|..+.
T Consensus 105 -----------------------------------------------------~~~ck~k~~~IlGF~W~~s~e~A~i~~ 131 (657)
T KOG2377|consen 105 -----------------------------------------------------TQECKTKNANILGFCWTSSTEIAFITD 131 (657)
T ss_pred -----------------------------------------------------HHHhccCcceeEEEEEecCeeEEEEec
Confidence 122233445688888887665555443
Q ss_pred CCcEEEEECCCC-eeeeEee-CCCCeEEEEEeecCCCEEEEE-E-cCCcEEEEecCCCcEE
Q 005646 374 DKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISG-S-IDGKVRIWAVLSCHVV 430 (686)
Q Consensus 374 Dg~V~iWd~~~~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sg-s-~Dg~V~iwd~~~~~~~ 430 (686)
. -+-+|.+... +.++... |...|+--.|.| +.+.++-+ + ...++.=+-++++.+.
T Consensus 132 ~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 132 Q-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred C-CeEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeeccccccccccEEEeeceee
Confidence 3 3566655432 2333333 788888888888 55543333 3 3444444555554433
No 413
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.53 E-value=0.14 Score=57.80 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=69.9
Q ss_pred CCcEEEEecCCCcE--EEEeccCCcEEEEEEcc----CCCEEEEEecCCcEEEEeCC--CCeeeeeeeEEeeccccCCCC
Q 005646 416 DGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRP----DGQGGIVGSMMGDCRFYNVS--DNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 416 Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~sp----dg~~l~~gs~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~ 487 (686)
.+.+|+-+..+... .-..+..+.|-.+.|-. .+. -.-|.+.|||+. .++++....+....... .
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~g---s 181 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYG---S 181 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH-----HHhhhhheeehHhhccccccceEEeecCcCC---C
Confidence 34566655544322 11224455666666643 333 233678899876 34444433333333322 2
Q ss_pred CeEEEEEeCC--CCCeEEEEeCCCcEEEEeCCc-------------------------ceeEcCCCCEEEEEeCCCcEEE
Q 005646 488 RITGFQFLPQ--DSSKVMVSCADSQVRILQGPN-------------------------VIGKYKDGKHIVSAGEDSNVYM 540 (686)
Q Consensus 488 ~I~~l~fsp~--~~~~l~~~s~D~~I~iwd~~~-------------------------~~~~~~dg~~l~sgs~Dg~V~i 540 (686)
.+.-+.|+|. +..++..+-.++.|++.+... .-..+|||..++.+..||.+++
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 3344555553 445666666788888876431 1236779999999999999999
Q ss_pred EeCC
Q 005646 541 WNCI 544 (686)
Q Consensus 541 Wd~~ 544 (686)
|.+.
T Consensus 262 ~Qiy 265 (1283)
T KOG1916|consen 262 YQIY 265 (1283)
T ss_pred eeee
Confidence 9875
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.14 E-value=37 Score=39.86 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=46.6
Q ss_pred CEEEEEECCCcEEEEECCCCeeeeEeeCCCCeE-------------EEEEee-cCCCEEEEEEc----------CCcEEE
Q 005646 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT-------------CVHFNP-VDDNYFISGSI----------DGKVRI 421 (686)
Q Consensus 366 ~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~-------------~v~fsp-~~~~~l~sgs~----------Dg~V~i 421 (686)
+.++.++.|+.|.-.|..+|+.+..|..++.|. .+.-.| ..++.++.|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 378888899999999999999998876544331 111111 12456666653 688999
Q ss_pred EecCCCcEEE
Q 005646 422 WAVLSCHVVD 431 (686)
Q Consensus 422 wd~~~~~~~~ 431 (686)
+|+++++++-
T Consensus 341 ~Da~TGkl~W 350 (764)
T TIGR03074 341 FDVNTGALVW 350 (764)
T ss_pred EECCCCcEee
Confidence 9999999873
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=91.02 E-value=8 Score=42.87 Aligned_cols=104 Identities=7% Similarity=0.069 Sum_probs=59.0
Q ss_pred EEEEEECC-----CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC--CcEEEEecCCCcEEEEeccCC
Q 005646 367 YLLSASID-----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID--GKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D--g~V~iwd~~~~~~~~~~~~~~ 437 (686)
.++.|+.+ .++..||..+++....-. ....-.+++. - ++.+.+.|+.+ ..+..||..+.+-........
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 56667654 357788888876544332 1111112222 2 67788888864 357788877664333333322
Q ss_pred cEEE-EEEccCCCEEEEEecCC---cEEEEeCCCCeeee
Q 005646 438 IVTA-VCYRPDGQGGIVGSMMG---DCRFYNVSDNHLEL 472 (686)
Q Consensus 438 ~V~~-v~~spdg~~l~~gs~dg---~i~iwd~~~~~~~~ 472 (686)
+... .+..-+|+..++|+.++ .+..||..++....
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~ 390 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF 390 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe
Confidence 2211 22233778888887654 47789988877654
No 416
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.76 E-value=27 Score=37.72 Aligned_cols=247 Identities=11% Similarity=0.057 Sum_probs=116.0
Q ss_pred eeeecCCCcccee-----eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCC---------
Q 005646 207 ERVRLNEEDAMFC-----SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG--------- 272 (686)
Q Consensus 207 ~~~s~~~~~l~~g-----~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--------- 272 (686)
..++++++++|.+ +....++|+|+.+... +.. .+..- .-..+.|.+|++.|+....|.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-l~d-----~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-LPD-----GIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE-EEE-----EEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcC-cCC-----ccccc--ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 4567788877654 3334699999876522 111 11111 122399999988776665443
Q ss_pred --cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCC-ceeeeeccccceeEEEeeccCC-ceEEEeCCccccccCCCeE
Q 005646 273 --VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSE-LKPLFMDKEKISILKSLRRTSE-SACVVFPPKVFRILEKPLH 348 (686)
Q Consensus 273 --~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 348 (686)
.|+.|.+.+...-..+ .|....... ...+..+.++...+........ ..+.+.+............
T Consensus 201 ~~~v~~~~~gt~~~~d~l----------vfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDEL----------VFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp CEEEEEEETTS-GGG-EE----------EEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred CcEEEEEECCCChHhCee----------EEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 2666666554422111 111111111 2233444444444443333333 3444433332101112233
Q ss_pred EeccCCCCee-EEEeeCCC-EEEEEE---CCCcEEEEECCCCee---e-eEeeCCCCeEEEEEeecCCCEEEEEEcCC--
Q 005646 349 EFHGHSGEIL-DLSWSKNN-YLLSAS---IDKTVRLWRVGNDHC---L-RVFPHSNYVTCVHFNPVDDNYFISGSIDG-- 417 (686)
Q Consensus 349 ~l~~h~~~V~-~l~~s~~~-~L~s~s---~Dg~V~iWd~~~~~~---~-~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg-- 417 (686)
.+..+...+. .+... .+ +++... ..+.|...++..... . ..+.+...+.-..+....+.+++....++
T Consensus 271 ~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp EEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE
T ss_pred EEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc
Confidence 3333333343 34333 44 333222 235666677776652 2 33446654433444442344455555554
Q ss_pred cEEEEecC-CCcEEEEec-cCCcEEEEEEccCCCEEEEEec----CCcEEEEeCCCCeeee
Q 005646 418 KVRIWAVL-SCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLEL 472 (686)
Q Consensus 418 ~V~iwd~~-~~~~~~~~~-~~~~V~~v~~spdg~~l~~gs~----dg~i~iwd~~~~~~~~ 472 (686)
.|+++++. +........ ..+.|..+...+++..+..... -++++.||+.+++...
T Consensus 350 ~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 48889998 444433332 2334566666666665544322 3578889998887654
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.69 E-value=14 Score=35.87 Aligned_cols=89 Identities=11% Similarity=0.222 Sum_probs=60.5
Q ss_pred eeEEEeeCCC--EEEEEECCCcEEEEE--CCCCee-----eeEeeC-----CCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 357 ILDLSWSKNN--YLLSASIDKTVRLWR--VGNDHC-----LRVFPH-----SNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 357 V~~l~~s~~~--~L~s~s~Dg~V~iWd--~~~~~~-----~~~~~h-----~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
-+.|+|+.+. +.++-+.+-+|.-|| ..+|.. +..+.. .-..-.++... .++++++.-..++|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence 3567887666 666777788887787 444432 222221 11123344455 78999999999999999
Q ss_pred ecCCCcEEEEecc-CCcEEEEEEcc
Q 005646 423 AVLSCHVVDWVDI-RQIVTAVCYRP 446 (686)
Q Consensus 423 d~~~~~~~~~~~~-~~~V~~v~~sp 446 (686)
|..+++++..+.. ...|+++||--
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999998855544 56799999954
No 418
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.60 E-value=12 Score=42.84 Aligned_cols=109 Identities=10% Similarity=0.056 Sum_probs=75.5
Q ss_pred CeeEEEeeCCC---EEEEEECCCcEEEEECCC-------C-------------eeeeEeeCCCCeEEEEEe--ecCCCEE
Q 005646 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGN-------D-------------HCLRVFPHSNYVTCVHFN--PVDDNYF 410 (686)
Q Consensus 356 ~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~-------~-------------~~~~~~~h~~~V~~v~fs--p~~~~~l 410 (686)
.|+.|....=| .|+.+..||.|.+|.+++ . ++...+.....++.++++ . ..++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence 45555544322 899999999999996621 0 122334456789999998 6 67788
Q ss_pred EEEEcCCcEEEEecCCC--cEE--EEeccCCcEEEEEEccCC---C---EEEEEecCCcEEEEeC
Q 005646 411 ISGSIDGKVRIWAVLSC--HVV--DWVDIRQIVTAVCYRPDG---Q---GGIVGSMMGDCRFYNV 465 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~--~~~--~~~~~~~~V~~v~~spdg---~---~l~~gs~dg~i~iwd~ 465 (686)
|+++....|.||-.... +.. ....+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888865432 211 122356678899997743 2 7888999999999887
No 419
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.43 E-value=0.9 Score=31.30 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=26.4
Q ss_pred CceEEEEEeeC-C--CEEEEEeCCCcEEEEEeecC
Q 005646 251 GSILTMKFSPD-G--QYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 251 ~~I~~l~fspd-g--~~Lasgs~Dg~I~vWd~~~~ 282 (686)
++|.+|+|+|+ + .+|+-+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 57999999984 4 58888877899999999853
No 420
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.18 E-value=9.8 Score=33.59 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=58.5
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCC--------cEEEEeccCCcEEEEEEcc-----CCCEEEEEecCCcEEEEeC
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSC--------HVVDWVDIRQIVTAVCYRP-----DGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~--------~~~~~~~~~~~V~~v~~sp-----dg~~l~~gs~dg~i~iwd~ 465 (686)
.-.|.. ....|++++.-|+|.|++.... ..+.+......|++++-.+ +...|++|+ ...+..||+
T Consensus 3 iGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345555 4557888889999999987633 3456777888888887655 344667765 467999999
Q ss_pred CCCeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 466 SDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
..+.-.+..++ ...|.++.+-
T Consensus 81 ~~N~d~Fyke~---------~DGvn~i~~g 101 (136)
T PF14781_consen 81 ENNSDLFYKEV---------PDGVNAIVIG 101 (136)
T ss_pred ccCchhhhhhC---------ccceeEEEEE
Confidence 98876553332 1446666653
No 421
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.01 E-value=11 Score=35.83 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=44.0
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
..+..+.| .+|...++|.++-+++..+..++.=+.++- ++..|+.+....+++.-|..+-.
T Consensus 101 d~~y~LTw----------~egvaf~~d~~t~~~lg~~~y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 101 DYFYQLTW----------KEGVAFKYDADTLEELGRFSYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred ceEEEEEe----------ccceeEEEChHHhhhhcccccCCcceeeec---CCcceEeeCCceEEEecCHHHhh
Confidence 45566666 467888999999999999997777777775 45556666556677777766543
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.47 E-value=6.1 Score=45.74 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
-.|..|.++|+|++++..+..|-+ |-.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEe
Confidence 358899999999999998886644 4444
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.38 E-value=9.6 Score=43.04 Aligned_cols=108 Identities=8% Similarity=0.061 Sum_probs=72.1
Q ss_pred CeeEEEeeCCCEEEEEE-CCCcEEEEECCCCeeeeEe--eCCCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCC-----
Q 005646 356 EILDLSWSKNNYLLSAS-IDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLS----- 426 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s-~Dg~V~iWd~~~~~~~~~~--~h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~----- 426 (686)
...-+.-+.-+.++... ....+.|||...+.....- ...+.|..+.|... +++.+++.+....|.+|--..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444444445444433 4457999999988755443 35899999999752 678888888999999985421
Q ss_pred C-------cEEEEeccC-CcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 427 C-------HVVDWVDIR-QIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 427 ~-------~~~~~~~~~-~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
. +.+....+. .+|...+|.++|..++.+ .+.+.|||-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 122333443 678999999999666543 367888874
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.31 E-value=2.6 Score=41.23 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=53.1
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe---------------ccCCcEEEEEEccCCCEEEEEecCC
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---------------DIRQIVTAVCYRPDGQGGIVGSMMG 458 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---------------~~~~~V~~v~~spdg~~l~~gs~dg 458 (686)
..++..+. . +++++++-..+|.+++||+.+++.+... .....|..+.++.+|.-+++- .+|
T Consensus 12 gs~~~~l~--~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng 87 (219)
T PF07569_consen 12 GSPVSFLE--C-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNG 87 (219)
T ss_pred CCceEEEE--e-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCC
Confidence 34444444 3 7889999999999999999998765211 244668889999888777665 458
Q ss_pred cEEEEeCCCCee
Q 005646 459 DCRFYNVSDNHL 470 (686)
Q Consensus 459 ~i~iwd~~~~~~ 470 (686)
..+.|+..-...
T Consensus 88 ~~y~y~~~L~~W 99 (219)
T PF07569_consen 88 DSYSYSPDLGCW 99 (219)
T ss_pred CEEEecccccee
Confidence 889998765443
No 425
>PHA03098 kelch-like protein; Provisional
Probab=89.22 E-value=13 Score=41.96 Aligned_cols=93 Identities=16% Similarity=0.248 Sum_probs=52.0
Q ss_pred CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC--------cEEEEecCCCcEEEEeccC---CcEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG--------KVRIWAVLSCHVVDWVDIR---QIVTA 441 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg--------~V~iwd~~~~~~~~~~~~~---~~V~~ 441 (686)
..+..||..+.+....-. ....-.+++. . ++.+++.|+.+. .+.+||..+.+-....... .....
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 483 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGCAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL 483 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCceEEE-E-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE
Confidence 458889988775443222 1111122222 2 567777776532 3888998877543322211 11122
Q ss_pred EEEccCCCEEEEEecC-----CcEEEEeCCCCeee
Q 005646 442 VCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLE 471 (686)
Q Consensus 442 v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~ 471 (686)
+. -+++.++.|+.+ +.+.+||..++...
T Consensus 484 ~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 484 CI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 22 267777787764 46889998887654
No 426
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.99 E-value=1.2 Score=30.72 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=27.1
Q ss_pred CCeEEEEEeecCC--CEEEEEEcCCcEEEEecCC
Q 005646 395 NYVTCVHFNPVDD--NYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 395 ~~V~~v~fsp~~~--~~l~sgs~Dg~V~iwd~~~ 426 (686)
+.|.++.|+|..+ ++|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6888888889999999995
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.89 E-value=15 Score=41.55 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=47.6
Q ss_pred eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEEEEc--cCCCEEEEEecCCcEEEEeC
Q 005646 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYR--PDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~~s--pdg~~l~~gs~dg~i~iwd~ 465 (686)
.+-+.-+. .++.-++-+...++.|||.+.+...... ...+.|..+.|. |+|+.+++-+..+.|.+|--
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 33344443 3444444444567999999988765333 447889999885 58999888889999999964
No 428
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.94 E-value=20 Score=43.29 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=47.5
Q ss_pred ccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 351 HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
.-|..++.+..+...+.++.+..-+.+-+|+.........+.-.+. ..++ ++..++++..||.+..||...++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 195 SLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ----LESR-DGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc----cCcc-CCceEEEEEecCCEEeeecCCCce
Confidence 3445556666555555455566667777777655444333331111 1155 899999999999999999998755
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=87.93 E-value=28 Score=36.51 Aligned_cols=107 Identities=8% Similarity=0.056 Sum_probs=62.8
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
...+.++.+.+++.++..+..|.+++=..+.+..-.... ....+..+.+.| ++..++ ++.+|.|. .....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLL-VSKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEE-EeCCCCC
Confidence 357788888888844455566776542233433222212 124578899988 666555 45577654 3444444
Q ss_pred EEEEe----ccCCcEEEEEEccCCCEEEEEecCCcEEEEe
Q 005646 429 VVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464 (686)
Q Consensus 429 ~~~~~----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd 464 (686)
.-... ......+.+.|..+++.+++| ..|.|.-|+
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 32221 223457788888777776655 678887765
No 430
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.86 E-value=46 Score=35.79 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=64.1
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCe-----eeeEeeC---CCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-----CLRVFPH---SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~-----~~~~~~h---~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
...+..+.+.+++.++.++.+|.+. |....++ ....... ...++.+.|.+ ++..+ .++..|.+... ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~-a~G~~G~v~~s-~D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAW-AAGGSGILLRS-TD 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEE-EEECCCcEEEe-CC
Confidence 3467888888888555566677654 3344443 2222222 23588999986 65554 55567876665 34
Q ss_pred CCcEEEE----eccCCcEEEEEEccCCCEEEEEecCCcEEEE
Q 005646 426 SCHVVDW----VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463 (686)
Q Consensus 426 ~~~~~~~----~~~~~~V~~v~~spdg~~l~~gs~dg~i~iw 463 (686)
.++.-.. .......+.+.|.++++.+++| .+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 4443222 2335568899998888777776 66776554
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=86.84 E-value=42 Score=37.17 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=55.3
Q ss_pred CC-EEEEEECC--CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC---cEEEEecCCCcEEEEeccC
Q 005646 365 NN-YLLSASID--KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 365 ~~-~L~s~s~D--g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg---~V~iwd~~~~~~~~~~~~~ 436 (686)
++ ..+.|+.+ .++..||..+++....-. ..-.-.+++. .++.+.+.|+.++ .+..||..+.+-.......
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 45 55555543 468888887665433222 1111112222 1678888888654 4677888766433222221
Q ss_pred CcEE-EEEEccCCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 437 QIVT-AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 437 ~~V~-~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
.+.. ..+..-+|+..+.| |.+.+||..+++...
T Consensus 396 ~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~ 429 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTL 429 (480)
T ss_pred CccccceEEEECCEEEEEC---CceEEecCCCCcEeE
Confidence 1111 11223467677776 457889998877653
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.82 E-value=36 Score=38.71 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=30.3
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
...+.+..+..||+.++|+.=+.+|.|.+-+....+.
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 3346788899999999999999999999988765543
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=85.88 E-value=24 Score=37.55 Aligned_cols=108 Identities=10% Similarity=0.072 Sum_probs=56.5
Q ss_pred CCeEEEEEeecCCCEEEEEE-----------cCC-cEEEEecCC--CcE---EEEeccCCcEEEEEEccCCCEEEEEecC
Q 005646 395 NYVTCVHFNPVDDNYFISGS-----------IDG-KVRIWAVLS--CHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMM 457 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs-----------~Dg-~V~iwd~~~--~~~---~~~~~~~~~V~~v~~spdg~~l~~gs~d 457 (686)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++. ..+...-...+.+++.++| |++++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4567889998 888777653 223 677776543 221 2222333456889999998 4444444
Q ss_pred CcEEEEeCCCCeeee-eeeEEeecccc---CCCCCeEEEEEeCCCCCeEEEEe
Q 005646 458 GDCRFYNVSDNHLEL-DAEICVHSKKK---APCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 458 g~i~iwd~~~~~~~~-~~~~~~~~~~~---~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
...++.|........ ..+..+..... .+......+.|.| ++.+.++.+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecc
Confidence 333344554221110 11111111111 1234578899999 666655544
No 434
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=84.93 E-value=23 Score=35.49 Aligned_cols=99 Identities=20% Similarity=0.114 Sum_probs=57.5
Q ss_pred CeEEEEEeecCCCEEEEEE---cCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEe-CCCCeee
Q 005646 396 YVTCVHFNPVDDNYFISGS---IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN-VSDNHLE 471 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs---~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd-~~~~~~~ 471 (686)
.+.+.++++ +++.++... ....|+++.......... ....++.-.|+++|...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 789999999 787766655 233455554433222222 334788889999988887777777777774 2222221
Q ss_pred eeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 472 ~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
. ..+.... ....|+.|.++| ++..++
T Consensus 102 ~---~~v~~~~--~~~~I~~l~vSp-DG~RvA 127 (253)
T PF10647_consen 102 P---VEVDWPG--LRGRITALRVSP-DGTRVA 127 (253)
T ss_pred e---EEecccc--cCCceEEEEECC-CCcEEE
Confidence 1 1111100 011799999999 444333
No 435
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.90 E-value=42 Score=36.06 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=60.0
Q ss_pred eeEEEeeCCCEEEEEECCCcE-EEEECCCCe-eeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-----
Q 005646 357 ILDLSWSKNNYLLSASIDKTV-RLWRVGNDH-CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV----- 429 (686)
Q Consensus 357 V~~l~~s~~~~L~s~s~Dg~V-~iWd~~~~~-~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~----- 429 (686)
...+..++++.++..+..|.+ +-||-.... ..........++.+.|.+ ++.+++++ .+|.+. |....++.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccccc
Confidence 445566788844444445543 345433221 112233556789999988 77777665 566643 34444431
Q ss_pred EEEec---cCCcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 430 VDWVD---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 430 ~~~~~---~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
..... ....++++.|.+++..+++| ..|.+..-.-
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D 355 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTD 355 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCC
Confidence 12111 22358999999988776665 6677666543
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.71 E-value=15 Score=39.59 Aligned_cols=130 Identities=14% Similarity=0.174 Sum_probs=78.3
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeec------CCCEEEEEEcCCcEEEEecCC-CcEEEEeccCCc-
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV------DDNYFISGSIDGKVRIWAVLS-CHVVDWVDIRQI- 438 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~------~~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~~~~- 438 (686)
.+..+.....+.--|+..|+.+..+.....| -++|.|. ....-+.|-.+..|.-.|.+- +..+.....+..
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 4556777778888899999999999855555 6888882 112233444455555556653 222222222222
Q ss_pred ----EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 439 ----VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 439 ----V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
..+..-...| ++|+|+..|.|++||--.-.... ...+-...|..+..+. +++.++++|.
T Consensus 561 tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKt--------alP~lG~aIk~idvta-~Gk~ilaTCk 623 (776)
T COG5167 561 TKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKT--------ALPGLGDAIKHIDVTA-NGKHILATCK 623 (776)
T ss_pred ccccccccccccCc-eEEEecCCCceeeehhhcchhhh--------cCcccccceeeeEeec-CCcEEEEeec
Confidence 3333333344 89999999999999954322111 1222345688888888 6666666654
No 437
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.10 E-value=46 Score=37.88 Aligned_cols=222 Identities=17% Similarity=0.142 Sum_probs=111.2
Q ss_pred cceeeecCC-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEE-EEEeecC
Q 005646 205 EGERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR-LWQVVED 282 (686)
Q Consensus 205 ~~~~~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~-vWd~~~~ 282 (686)
+...+..+. ..|++...+|++.||++-....+.. -.+ +......|..+.|..+|-.+++. +|.+. +-++...
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~--svg--~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN--SVG--FESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhccc--ccc--cccccCceeEEEEecCceEEEec--CCcEEEEcCCCcc
Confidence 344455444 4678889999999999866444332 111 12233457777777777555554 34443 3333322
Q ss_pred eeeeee---ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 283 ERLTEV---DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 283 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
. +.++ .....+..|.....++......+.....-...+.....+ ....+.+..-...+..
T Consensus 159 ~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~----------------~~q~~~~~~~~~~~~k 221 (829)
T KOG2280|consen 159 K-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES----------------RVQLHALSWPNSSVVK 221 (829)
T ss_pred h-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc----------------cccccccCCCCceEEE
Confidence 2 1111 112222233333333322222222111000000000000 0112222222356788
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~ 436 (686)
++.||+. +|+-=...|.|.+-.++..+++..+. ...+-..++|.- ++ -++.+.+..|.+..-....+..+.++.
T Consensus 222 i~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg-nd--aVvl~~e~~l~lvgp~gd~V~f~yd~t 298 (829)
T KOG2280|consen 222 ISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG-ND--AVVLSWEVNLMLVGPPGDSVQFYYDET 298 (829)
T ss_pred EEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec-CC--ceEEEEeeeEEEEcCCCCccccccCCC
Confidence 8999988 88888899999999998888887776 333334677754 32 233334444555544444443444333
Q ss_pred CcEEEEEEccCCCEEEEEe
Q 005646 437 QIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs 455 (686)
. + +.--+||-.+++.+
T Consensus 299 ~-~--l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 299 A-I--LSAEVDGVRIITST 314 (829)
T ss_pred c-e--eeeccCeeEEeccc
Confidence 2 1 44555766666543
No 438
>PRK13684 Ycf48-like protein; Provisional
Probab=83.72 E-value=61 Score=33.97 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=61.7
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEE-EECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRL-WRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~i-Wd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
...+.++.+.+++.++..+..|.+.. +|- .++.-.... -...++++.+.| ++..++.| ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45688899999885555555665543 222 222222222 456889999998 77776665 4676653233444322
Q ss_pred EEec-----cCCcEEEEEEccCCCEEEEEecCCcEEE
Q 005646 431 DWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRF 462 (686)
Q Consensus 431 ~~~~-----~~~~V~~v~~spdg~~l~~gs~dg~i~i 462 (686)
.... ....+.++.+.|+++.+++| .+|.+..
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~ 284 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV 284 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE
Confidence 2111 12347889999988766655 5665543
No 439
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.31 E-value=45 Score=32.15 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=69.7
Q ss_pred eEEEeeCCCEEEEEECCCcEEEEECC--CCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---C---cEEEE-ecCCC-
Q 005646 358 LDLSWSKNNYLLSASIDKTVRLWRVG--NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---G---KVRIW-AVLSC- 427 (686)
Q Consensus 358 ~~l~~s~~~~L~s~s~Dg~V~iWd~~--~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g---~V~iw-d~~~~- 427 (686)
..+.-.+.+.|+.+.....|.+|++. ..+.+..|..-+.|..++++. .|+|++|-=.+ . .+|+| +.+..
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 33444454445444666789999988 345677777779999999999 89999996433 2 56775 22111
Q ss_pred ---cE---------------------E--EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 428 ---HV---------------------V--DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 428 ---~~---------------------~--~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
+. + .-.....++.+++..|-.-.|++| .++++.+|.+....
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg-~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG-CGNKLVLFTLKYQT 166 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE-cCCEEEEEEEEEEE
Confidence 00 1 112234567788888844445555 45689999875433
No 440
>PRK10115 protease 2; Provisional
Probab=83.29 E-value=98 Score=36.06 Aligned_cols=67 Identities=9% Similarity=0.178 Sum_probs=37.5
Q ss_pred eEEEeeCCC--EEEEEECC-----CcEEEEECCCC--eeeeEee-CCCCeEEEEEeecCCCEEEEEEc---CCcEEEEec
Q 005646 358 LDLSWSKNN--YLLSASID-----KTVRLWRVGND--HCLRVFP-HSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAV 424 (686)
Q Consensus 358 ~~l~~s~~~--~L~s~s~D-----g~V~iWd~~~~--~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~---Dg~V~iwd~ 424 (686)
..++|.+++ ++++.-.+ ..|..+++.++ +-...+. ......-..+.+.++.+++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458999887 44443322 36888888887 3333444 22223322233336776655443 357888885
No 441
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=83.22 E-value=1e+02 Score=36.29 Aligned_cols=68 Identities=12% Similarity=0.001 Sum_probs=50.3
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe----cc----------------CCcEEEEEEccCCCEEE
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DI----------------RQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~----~~----------------~~~V~~v~~spdg~~l~ 452 (686)
....|.+|+... -+.+++..-.||+|.++|-.+-+.+... .. -..+..++|||.+..++
T Consensus 258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 346677887766 7778999999999999998876544222 11 11234588999999999
Q ss_pred EEecCCcEE
Q 005646 453 VGSMMGDCR 461 (686)
Q Consensus 453 ~gs~dg~i~ 461 (686)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 998999866
No 442
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.21 E-value=0.18 Score=53.22 Aligned_cols=96 Identities=15% Similarity=0.256 Sum_probs=71.0
Q ss_pred CCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeE-ee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRV-FP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 354 ~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~-~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
++...+++|..++ .++.+-..+.+.+||+.+...... +. |.... +.|++ ....++.+...|.++|++..+.+
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchh
Confidence 4566788888877 666777889999999986533221 22 33333 78888 77788888899999999998887
Q ss_pred EEEEec-cCCcEEEEEEccCCCEEE
Q 005646 429 VVDWVD-IRQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 429 ~~~~~~-~~~~V~~v~~spdg~~l~ 452 (686)
.....+ |...++++++.+.+..+.
T Consensus 151 ~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 151 RIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred hhhhhcccccceeEEEecccceeee
Confidence 665555 888899999999775443
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.83 E-value=4.5 Score=39.54 Aligned_cols=76 Identities=11% Similarity=0.077 Sum_probs=55.8
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceec-------ccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-------AHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~-------~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
.+..+...++++++.+.+|.+++||+.+....+...-....+. .....|..+.++.+|.-|++-+ +|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 4556778899999999999999999988655443311111222 4667899999999998887765 4788999
Q ss_pred Eeec
Q 005646 278 QVVE 281 (686)
Q Consensus 278 d~~~ 281 (686)
+..-
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 8654
No 444
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=82.80 E-value=55 Score=36.30 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=56.1
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCC--eeeeEeeCCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcE-----
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFPHSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHV----- 429 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~----- 429 (686)
.+.|+|.. .|+.-.....-.+.++... +....+...+-|.|.+|.+ ||+.|+.+-.. =.-+|||-.....
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~~Csf 195 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLHRCSF 195 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhhhCCc
Confidence 56799988 5554444444455666543 3444556889999999999 88877765433 3467888654322
Q ss_pred EEEeccCCcEEEEEEccCC
Q 005646 430 VDWVDIRQIVTAVCYRPDG 448 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg 448 (686)
-..++..+.|.++.-.-|.
T Consensus 196 cPVFdv~~~Icsi~AT~ds 214 (671)
T PF15390_consen 196 CPVFDVGGYICSIEATVDS 214 (671)
T ss_pred ceeecCCCceEEEEEeccc
Confidence 2345566677776655554
No 445
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.55 E-value=20 Score=43.24 Aligned_cols=164 Identities=13% Similarity=0.158 Sum_probs=87.9
Q ss_pred cCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCc----e-eeeeccccceeEE
Q 005646 249 HDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL----K-PLFMDKEKISILK 322 (686)
Q Consensus 249 H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~ 322 (686)
|...=..|-+-|. ++.=+| .|..+.+|+++++.....+......+-.+.......+.. . .+.........+.
T Consensus 77 ~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL 154 (1311)
T ss_pred CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence 3333344545553 333333 578899999999777666665544443333332222211 1 1111111111111
Q ss_pred Eee-ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECC----CC----eee-----
Q 005646 323 SLR-RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVG----ND----HCL----- 388 (686)
Q Consensus 323 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~----~~----~~~----- 388 (686)
.+. .......-.+.. ...+....-.|.|+....+|.++-++.|| .||.+. .+ +|-
T Consensus 155 gV~~~~~~~~~~~f~~---------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt 223 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNT---------SFKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLT 223 (1311)
T ss_pred EEEeccccCccccccc---------ceeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCc
Confidence 111 111111000000 02222345678899977888777777888 555541 11 111
Q ss_pred ------------eEe-eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 389 ------------RVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 389 ------------~~~-~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
... .+..+|..|.... ..+++++-+..|+|++||+..
T Consensus 224 ~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 224 KSVLSSLVPSLLSVPGSSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhHHHHhhhhhhcCCCCCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence 111 2577999999987 788999999999999999976
No 446
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=81.08 E-value=75 Score=33.21 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=30.4
Q ss_pred eeeecCCCccceeeccceEEEEEcCCcc-ccccccccCceecccCCceEEEEEeeC
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRS-KELSALYKGQEIQAHDGSILTMKFSPD 261 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~-~~~~~~~~~~~l~~H~~~I~~l~fspd 261 (686)
..+.+++.. +++...|+|++++..... ..+.... ............++|+|+
T Consensus 7 ~a~~pdG~l-~v~e~~G~i~~~~~~g~~~~~v~~~~--~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 7 MAFLPDGRL-LVAERSGRIWVVDKDGSLKTPVADLP--EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEETTSCE-EEEETTTEEEEEETTTEECEEEEE-T--TTBTSTTBSEEEEEE-TT
T ss_pred EEEeCCCcE-EEEeCCceEEEEeCCCcCcceecccc--cccccccCCcccceeccc
Confidence 456677654 445669999999833222 1111111 234456678999999995
No 447
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.55 E-value=94 Score=33.98 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=29.5
Q ss_pred CCeeEEEeeCCC----EEEEEECCCcEEEEECCCCeeeeEe
Q 005646 355 GEILDLSWSKNN----YLLSASIDKTVRLWRVGNDHCLRVF 391 (686)
Q Consensus 355 ~~V~~l~~s~~~----~L~s~s~Dg~V~iWd~~~~~~~~~~ 391 (686)
-.+...+|+|+. +|+.-+.|.+||+||+....-+...
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 356788999975 8888899999999999877665443
No 448
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=79.88 E-value=75 Score=32.47 Aligned_cols=57 Identities=9% Similarity=0.251 Sum_probs=40.8
Q ss_pred cEEEEECCCCeeeeEee-------CCCCeEEEEEeecCC----CE-EEEEEcCCcEEEEecCCCcEEEE
Q 005646 376 TVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDD----NY-FISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~-------h~~~V~~v~fsp~~~----~~-l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
.|.+||+.+++.++.+. ..+.++.+.+...++ .+ +++=+..+-|.++|+.+++....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv 103 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRV 103 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEE
Confidence 78899999999988875 246788888877332 23 34444456899999998865443
No 449
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.70 E-value=39 Score=34.31 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=59.0
Q ss_pred CcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEE------cCCcEEEEecCCCcEEEEec-----cCCcEEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS------IDGKVRIWAVLSCHVVDWVD-----IRQIVTAV 442 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs------~Dg~V~iwd~~~~~~~~~~~-----~~~~V~~v 442 (686)
..|++||..+.+....-. -.+.|+.|.|.. +..+++.|. ....+..||..+........ ..++|+++
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 358999998887765554 678899999985 666666665 34568899998876543333 35788888
Q ss_pred EEcc-CCC-EEEEEe-cCCc--EEEEe
Q 005646 443 CYRP-DGQ-GGIVGS-MMGD--CRFYN 464 (686)
Q Consensus 443 ~~sp-dg~-~l~~gs-~dg~--i~iwd 464 (686)
.+.. |+. ..+.|. .+|. |..||
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEc
Confidence 7743 443 444443 3444 55554
No 450
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=79.44 E-value=1.5e+02 Score=35.82 Aligned_cols=155 Identities=14% Similarity=0.202 Sum_probs=81.7
Q ss_pred EEEEEEC---------CCcEEEEECCC-----Ce-----eeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 367 YLLSASI---------DKTVRLWRVGN-----DH-----CLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 367 ~L~s~s~---------Dg~V~iWd~~~-----~~-----~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
+|+.|.. -|.+.|+|+-. ++ .++.+. ..++|..++=- +| +|+++. ..+|.||++
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV--~G-~l~~~~-GqKI~v~~l 1123 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV--RG-HLLSSQ-GQKIIVRKL 1123 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe--cc-EEEEcc-CcEEEEEEe
Confidence 7777642 37899999732 22 222222 66888877743 44 454443 468999999
Q ss_pred -CCCcEE--EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC-
Q 005646 425 -LSCHVV--DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS- 500 (686)
Q Consensus 425 -~~~~~~--~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~- 500 (686)
+...++ .+.+.. +......--+++|+.|..-..|.+.-.......+ .+.. +....-.++++.|.-++++
T Consensus 1124 ~r~~~ligVaFiD~~--~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rl----sL~s-rd~~~l~v~s~EFLVdg~~L 1196 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLP--LYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRL----SLLS-RDFEPLNVYSTEFLVDGSNL 1196 (1366)
T ss_pred ccCCcceeeEEeccc--eeEEehhhhhhheehhhhhhceEEEEEccCceEE----EEee-cCCchhhceeeeeEEcCCee
Confidence 565554 343333 3333334445677877777777776654332211 1111 1222244777777774433
Q ss_pred eEEEEeCCCcEEEEeCCcceeEcCCCCEEEEE
Q 005646 501 KVMVSCADSQVRILQGPNVIGKYKDGKHIVSA 532 (686)
Q Consensus 501 ~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sg 532 (686)
.++++.+|+.|++|-..-...-+-+|+.|+..
T Consensus 1197 ~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~r 1228 (1366)
T KOG1896|consen 1197 SFLVSDADRNIHVYMYAPENIESLSGQRLVRR 1228 (1366)
T ss_pred EEEEEcCCCcEEEEEeCCCCccccCcceeeee
Confidence 23444455555555432222222244444443
No 451
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=78.39 E-value=83 Score=32.11 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=80.3
Q ss_pred EEEEEECCCcEEEEECCCCee-----eeEee--CCCCe-EEEEEeec-CCCEEEEE-EcCCcEEEEecCCCcEEE---Ee
Q 005646 367 YLLSASIDKTVRLWRVGNDHC-----LRVFP--HSNYV-TCVHFNPV-DDNYFISG-SIDGKVRIWAVLSCHVVD---WV 433 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~-----~~~~~--h~~~V-~~v~fsp~-~~~~l~sg-s~Dg~V~iwd~~~~~~~~---~~ 433 (686)
.++.++.||+|.-|...-+.. ...+. ..+.| ..+++.+. .+++|+.+ -..++|.+||-.-.++.. +.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 578899999999998543322 12222 12333 44555541 24555544 467899999865433211 11
Q ss_pred c----------------cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 434 D----------------IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 434 ~----------------~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
+ ..-.|+-..-.++++.=+.|..-|.|-+||+...-++.. ..........+|+..|.
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~-------as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRV-------ASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEe-------ccCCcccCCceeeeChh
Confidence 0 001122222233443444455567899999875433211 12233345667777663
Q ss_pred CCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 498 DSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+-..+ .|.+|+-=-.||+|..+|..++.
T Consensus 255 ~FG~~----------------------sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 255 SFGSL----------------------SGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hhCCC----------------------CCCeEEeecCCceeEEecCCCCc
Confidence 21110 45566655568888888877665
No 452
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=78.10 E-value=14 Score=34.47 Aligned_cols=30 Identities=13% Similarity=0.350 Sum_probs=25.6
Q ss_pred CCeeEEEeeCCC-------EEEEEECCCcEEEEECCC
Q 005646 355 GEILDLSWSKNN-------YLLSASIDKTVRLWRVGN 384 (686)
Q Consensus 355 ~~V~~l~~s~~~-------~L~s~s~Dg~V~iWd~~~ 384 (686)
..|..++|||.| +|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 789999999999998664
No 453
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=77.51 E-value=28 Score=36.41 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=56.1
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE---EEEe-----ccCCcEEEEEEccC----CCEEEEEecC------
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV---VDWV-----DIRQIVTAVCYRPD----GQGGIVGSMM------ 457 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~---~~~~-----~~~~~V~~v~~spd----g~~l~~gs~d------ 457 (686)
..+.|+|.| ++.+|++ -..|.|++++ ..+.. +... ........++++|+ +...++.+..
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 457899999 8877665 6699999999 44443 2211 22456899999994 4333333321
Q ss_pred --CcEEEEeCCCC--eeeeeeeEE-eeccccCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 005646 458 --GDCRFYNVSDN--HLELDAEIC-VHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 458 --g~i~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~ 509 (686)
..|.-|.+... .+.....+. ...........-..|.|.| ++.++++.+..+
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~ 135 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCC
Confidence 23444444443 211111111 1111112334466799999 566555555433
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.12 E-value=31 Score=37.41 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=49.2
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeC---------CCCeeeeeeeEE---eeccccCCCCCeEEEEEeCCC--CCeEE
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNV---------SDNHLELDAEIC---VHSKKKAPCKRITGFQFLPQD--SSKVM 503 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~---------~~~~~~~~~~~~---~~~~~~~~~~~I~~l~fsp~~--~~~l~ 503 (686)
.|..+..++.|..++..+.+|.+.++=. .+++....-... .+-......-.+...+|+|+. ...|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4778889999999999999998776642 222211110000 000011122345667788854 56777
Q ss_pred EEeCCCcEEEEeCCc
Q 005646 504 VSCADSQVRILQGPN 518 (686)
Q Consensus 504 ~~s~D~~I~iwd~~~ 518 (686)
+-+.|+.||+|+...
T Consensus 185 iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSE 199 (741)
T ss_pred EEecCcEEEEEecCC
Confidence 778888888887543
No 455
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=76.82 E-value=70 Score=33.21 Aligned_cols=104 Identities=11% Similarity=0.121 Sum_probs=55.3
Q ss_pred CEEEEEECC-----CcEEEEECCCCeee---eEee---CCCCeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcE
Q 005646 366 NYLLSASID-----KTVRLWRVGNDHCL---RVFP---HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHV 429 (686)
Q Consensus 366 ~~L~s~s~D-----g~V~iWd~~~~~~~---~~~~---h~~~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~ 429 (686)
.+++.|+.+ ..+..+|+.+.+.. ..+. ....-.+++.. ++.+++.|+.. ..+..||+.+.+-
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 355556654 35667777666531 2222 11111222222 56777777742 3588889887654
Q ss_pred EEEeccC--CcEEEEEEccCCCEEEEEecCCc----EEEEeCCCCeee
Q 005646 430 VDWVDIR--QIVTAVCYRPDGQGGIVGSMMGD----CRFYNVSDNHLE 471 (686)
Q Consensus 430 ~~~~~~~--~~V~~v~~spdg~~l~~gs~dg~----i~iwd~~~~~~~ 471 (686)
....... ......+...++++.+.|+.++. +.+||..+++..
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 3322211 11222333446778888876643 568888877654
No 456
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=76.62 E-value=63 Score=35.32 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=37.8
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE------e--ccCCcEEEEEEccCC
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW------V--DIRQIVTAVCYRPDG 448 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~------~--~~~~~V~~v~~spdg 448 (686)
-...+.|+|.| ++++|++--..|+|++++..++..... . ........|+++|+-
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 45678999999 888777765579999998665432211 1 124668899999874
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.56 E-value=9.3 Score=43.17 Aligned_cols=80 Identities=13% Similarity=0.241 Sum_probs=48.4
Q ss_pred CCCccceeeccceEEEEEcCC---ccccccccc-cC----ceec-----------ccCCceEEEEEee----CCCEEEEE
Q 005646 212 NEEDAMFCSKVQRVKVYHCKK---RSKELSALY-KG----QEIQ-----------AHDGSILTMKFSP----DGQYLASA 268 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~---~~~~~~~~~-~~----~~l~-----------~H~~~I~~l~fsp----dg~~Lasg 268 (686)
++..++.+..||.+....... ......... .. +.+. .-.+.+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 777888889999888877665 111111100 00 0011 1134566666666 67899999
Q ss_pred eCCCcEEEEEeecCeeeeeeccC
Q 005646 269 GDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 269 s~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
+.|+++|+||+.+++++......
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999987776554
No 458
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.39 E-value=74 Score=30.51 Aligned_cols=117 Identities=9% Similarity=-0.009 Sum_probs=69.5
Q ss_pred EEEeeCCCEEEEEEC--CCcEEEEECCCCeeeeEeeCC-CCeEEEEEeecCCCE-EEEEEcCCcEEEEecCCCcEEEEec
Q 005646 359 DLSWSKNNYLLSASI--DKTVRLWRVGNDHCLRVFPHS-NYVTCVHFNPVDDNY-FISGSIDGKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 359 ~l~~s~~~~L~s~s~--Dg~V~iWd~~~~~~~~~~~h~-~~V~~v~fsp~~~~~-l~sgs~Dg~V~iwd~~~~~~~~~~~ 434 (686)
.+.+..+.++.+.+. ...|++||+.+++.+..-.-. ..+..=-... -+++ ..-.-.+|.-.++|..+.+++..+.
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-~gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-LGDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-ccceEEEEEeccceeEEEChHHhhhhcccc
Confidence 344433225666654 357999999999887665422 1221111111 1222 2333457888899999998887776
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
..+.=..++. |++.|+.+....++++-|..+-......++..
T Consensus 129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~ 170 (262)
T COG3823 129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTD 170 (262)
T ss_pred cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEE
Confidence 6666666654 56667777767778777776554444334333
No 459
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=75.78 E-value=0.39 Score=50.88 Aligned_cols=146 Identities=12% Similarity=0.132 Sum_probs=97.6
Q ss_pred CCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-
Q 005646 353 HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV- 430 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~- 430 (686)
|-..-....|-+.+ .|+.++.+..|..||-. ++.......++....++|....+..++.+-..+.+.+||+.+....
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 33344456777877 78888888899999853 4444444556666778888733344556667899999999875432
Q ss_pred -EEec-cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 431 -DWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 431 -~~~~-~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
...+ +.... +.|++.+..++.|...|.+.||+..+.+... ....|..+++++++.+. .+.+.++.|
T Consensus 112 LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ii--------v~Gkh~RRgtq~av~lE--d~vil~dcd 179 (615)
T KOG2247|consen 112 LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRII--------VMGKHQRRGTQIAVTLE--DYVILCDCD 179 (615)
T ss_pred HhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhh--------hhcccccceeEEEeccc--ceeeecCcH
Confidence 2211 22222 7899999999999999999999987654322 11226788999999883 455555555
Q ss_pred CcE
Q 005646 509 SQV 511 (686)
Q Consensus 509 ~~I 511 (686)
..+
T Consensus 180 ~~L 182 (615)
T KOG2247|consen 180 NTL 182 (615)
T ss_pred HHH
Confidence 443
No 460
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=75.55 E-value=24 Score=39.93 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=42.2
Q ss_pred EEEEEECCCcEEEEECCC----CeeeeEe--e---------------------CCCCeEEEEEee---cCCCEEEEEEcC
Q 005646 367 YLLSASIDKTVRLWRVGN----DHCLRVF--P---------------------HSNYVTCVHFNP---VDDNYFISGSID 416 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~----~~~~~~~--~---------------------h~~~V~~v~fsp---~~~~~l~sgs~D 416 (686)
.|+.+..||.+....... +...... . ....+..+++++ .+..++++.+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 777778888888777654 1111111 0 123445555554 267899999999
Q ss_pred CcEEEEecCCCcEEEEec
Q 005646 417 GKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~~ 434 (686)
++||+||+.+++++....
T Consensus 240 ~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 240 HTLRIWSLETGQCLATID 257 (547)
T ss_dssp SEEEEEETTTTCEEEEEE
T ss_pred CeEEEEECCCCeEEEEec
Confidence 999999999999965443
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=75.34 E-value=24 Score=32.92 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=26.4
Q ss_pred CcEEEEEEccCC------CEEEEEecCCcEEEEeCCCC
Q 005646 437 QIVTAVCYRPDG------QGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 437 ~~V~~v~~spdg------~~l~~gs~dg~i~iwd~~~~ 468 (686)
..+.+++|||-| ..|++-+.+|.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999944 47888999999999987644
No 462
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.71 E-value=98 Score=31.07 Aligned_cols=169 Identities=10% Similarity=0.038 Sum_probs=109.9
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeE-eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~-~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~ 433 (686)
.-.+++-.||| .-+++...+.|--.|..+++.... +.....-..|..-| ++..-++-+.. -|.-.|-++..+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEee
Confidence 44677788888 777777778888888888876543 33556667788888 77777665444 4555677776665443
Q ss_pred c----cCCcEEEEEEccCCCEEEEEec---------CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 434 D----IRQIVTAVCYRPDGQGGIVGSM---------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 434 ~----~~~~V~~v~~spdg~~l~~gs~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
- .........|.+.|+.-+++.. .+.|++|+... ...-++++..| ++.
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq------------------G~gpyGi~atp-dGs 201 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ------------------GGGPYGICATP-DGS 201 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC------------------CCCCcceEECC-CCc
Confidence 1 2345778899999998888742 12344554432 24467888899 777
Q ss_pred eEEEEeCCCcEEEEeCCcc-----------------eeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 501 KVMVSCADSQVRILQGPNV-----------------IGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 501 ~l~~~s~D~~I~iwd~~~~-----------------~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.-++.-.++.|-..|.... +-..+.|+.-+|....+.++.+|..+
T Consensus 202 vwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 202 VWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred EEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 7777777777777775432 11223555556655556666665544
No 463
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=74.39 E-value=32 Score=39.45 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=69.6
Q ss_pred CCCEEEEEEcCCcEEEEecCC-------C---------c----EEEEeccCCcEEEEEEc--cCCCEEEEEecCCcEEEE
Q 005646 406 DDNYFISGSIDGKVRIWAVLS-------C---------H----VVDWVDIRQIVTAVCYR--PDGQGGIVGSMMGDCRFY 463 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~-------~---------~----~~~~~~~~~~V~~v~~s--pdg~~l~~gs~dg~i~iw 463 (686)
+...|+.|..||.|.+|.+.+ . + ..........+..++++ ...++||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 567899999999999996621 0 0 11223345678899998 888899999998888888
Q ss_pred eCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC--CC---eEEEEeCCCcEEEEeC
Q 005646 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SS---KVMVSCADSQVRILQG 516 (686)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~--~~---~l~~~s~D~~I~iwd~ 516 (686)
-........ .+.....+..-|.++.|.+++ +. +|++++-.|.+-+|+.
T Consensus 193 af~l~~~r~-----~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERF-----YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccc-----ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 664421111 011111245669999999854 22 6666777777777664
No 464
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=71.46 E-value=17 Score=38.53 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=69.6
Q ss_pred EEEEEECCCcEEEE-ECCCCe-----eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcE
Q 005646 367 YLLSASIDKTVRLW-RVGNDH-----CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV 439 (686)
Q Consensus 367 ~L~s~s~Dg~V~iW-d~~~~~-----~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V 439 (686)
-|+.++.||.|.-| |++.+. .++.++ ....+..+.-.. +.+-|++-+..|++.++.....+.+-....-..+
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~ 360 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAP 360 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhhcCc
Confidence 67788888888877 443322 122222 224444443322 5667888899999999887776666555555567
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
.-++++|.+.++++- ..|.++++.+++...
T Consensus 361 ~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 361 QLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 789999999998875 568899999887654
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.38 E-value=27 Score=42.13 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=50.7
Q ss_pred ECCCcEEEEECCCCeeeeEee-CCCCeEEEE--------EeecCCCEEEEEEcCCcEEEEecC----CCcEEEEe-----
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH--------FNPVDDNYFISGSIDGKVRIWAVL----SCHVVDWV----- 433 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~--------fsp~~~~~l~sgs~Dg~V~iwd~~----~~~~~~~~----- 433 (686)
+.|+.+.+|+.+++.....+. ....|..|. |.| .=++++.-+.--.|.|+-+. ++..-.+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh-hhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 458899999999976666655 333444443 233 22333343434456666442 22111111
Q ss_pred -ccCCcEEEEEEccCCCEEEEEecCCcEEEEeC
Q 005646 434 -DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 434 -~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~ 465 (686)
.....|+++.+..+|+.+++| .|| .+|.+
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl 204 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAG-RDG--NLYEL 204 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEee-cCC--CEEEE
Confidence 124568899988899877766 666 44543
No 466
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=70.81 E-value=7.5 Score=43.51 Aligned_cols=79 Identities=10% Similarity=0.204 Sum_probs=54.0
Q ss_pred CCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEE
Q 005646 384 NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463 (686)
Q Consensus 384 ~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iw 463 (686)
+..|.+.......+++++-+| .+.-+++++.||.|++|+....+.........+-..+.|...| +++.+.|..+.-|
T Consensus 4 t~~~s~~~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 4 TFDCSRDPKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAW 80 (1636)
T ss_pred cccccCCccccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhhee
Confidence 334444445567789999999 9999999999999999998765543333333444556666554 5566666776666
Q ss_pred eC
Q 005646 464 NV 465 (686)
Q Consensus 464 d~ 465 (686)
.-
T Consensus 81 ~~ 82 (1636)
T KOG3616|consen 81 KE 82 (1636)
T ss_pred ec
Confidence 54
No 467
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=70.71 E-value=1.7e+02 Score=32.07 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=25.8
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
.-..-+.|+|.|||++|++--..|.|++++..++
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 3456789999999988777644699998875444
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.30 E-value=92 Score=33.44 Aligned_cols=113 Identities=14% Similarity=0.129 Sum_probs=71.1
Q ss_pred cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
...++|.++.||+|+ .||.--.|++|.+.+....+....+. .+..|....|.. + .-++.....| +-+|-..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEc
Confidence 456799999999999 88888999999999986555443333 234578888875 3 4455555433 5566443
Q ss_pred C--CcEEEEeccCCcEEEEEEccCCCEEEEEec--CCcEEEEeCCC
Q 005646 426 S--CHVVDWVDIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSD 467 (686)
Q Consensus 426 ~--~~~~~~~~~~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~ 467 (686)
. ..+.....+...|.-..|.++-+.++.++. .+++.=+.+++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 2 233333445666777788887776554433 33333344443
No 469
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=68.69 E-value=69 Score=34.83 Aligned_cols=93 Identities=13% Similarity=0.199 Sum_probs=61.0
Q ss_pred CCCcEEEEECC-CCeeeeEeeCCCCeEEEEEee---cCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccC
Q 005646 373 IDKTVRLWRVG-NDHCLRVFPHSNYVTCVHFNP---VDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPD 447 (686)
Q Consensus 373 ~Dg~V~iWd~~-~~~~~~~~~h~~~V~~v~fsp---~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spd 447 (686)
.+..|.--|.+ .+..+.......+++--.|+. ....+++.++..|-||+||--..+.. .+.+....|..+..+.+
T Consensus 535 S~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~ 614 (776)
T COG5167 535 SDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTAN 614 (776)
T ss_pred cccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecC
Confidence 34444444544 333444443444444444433 24679999999999999997655443 44566788999999999
Q ss_pred CCEEEEEecCCcEEEEeCC
Q 005646 448 GQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 448 g~~l~~gs~dg~i~iwd~~ 466 (686)
|+++++.+ ...+.+-|+.
T Consensus 615 Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 615 GKHILATC-KNYLLLTDVP 632 (776)
T ss_pred CcEEEEee-cceEEEEecc
Confidence 99887764 4577787875
No 470
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=68.60 E-value=1.7e+02 Score=31.19 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=59.7
Q ss_pred CcEEEEECC--CCeeeeEee--------CCCCeEEEEEe--ecCCC-EEEEEEcCCcEEEEecC---CC----cEEEEec
Q 005646 375 KTVRLWRVG--NDHCLRVFP--------HSNYVTCVHFN--PVDDN-YFISGSIDGKVRIWAVL---SC----HVVDWVD 434 (686)
Q Consensus 375 g~V~iWd~~--~~~~~~~~~--------h~~~V~~v~fs--p~~~~-~l~sgs~Dg~V~iwd~~---~~----~~~~~~~ 434 (686)
.+|++|.+. ++. +..+. ....+..+|+- |.++. +++....+|.+..|-+. .+ +++..+.
T Consensus 127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 468888765 333 33322 12346667764 43444 66677889998888774 33 3466777
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
....+..+........|++|-.+--|.-|+..
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred CCCcceEEEEecccCCEEEecCccEEEEEecC
Confidence 77889999999988899999998888888876
No 471
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=68.51 E-value=49 Score=35.66 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=53.9
Q ss_pred eEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCC---------------C
Q 005646 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDD---------------N 408 (686)
Q Consensus 347 ~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~---------------~ 408 (686)
...+......+.++..+|++ +.++...=|.|.|+|+.++..++.++ -...+.-+....... .
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 44556677789999999999 55555555899999999998877775 111111111111011 1
Q ss_pred E--EEEEEcCCcEEEEecCCCcEEEE
Q 005646 409 Y--FISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 409 ~--l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
+ ++=+-.-|.|-||.++++..+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a 405 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAA 405 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEE
Confidence 1 22234568888999888876543
No 472
>PLN02153 epithiospecifier protein
Probab=68.27 E-value=1.6e+02 Score=30.81 Aligned_cols=93 Identities=10% Similarity=0.098 Sum_probs=50.1
Q ss_pred cEEEEECCCCeeeeEeeCC---C----CeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcEEEEecc-----CC-
Q 005646 376 TVRLWRVGNDHCLRVFPHS---N----YVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVDI-----RQ- 437 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~h~---~----~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~~-----~~- 437 (686)
.+.+||+.+.+-...-... . ....+.+ ++.+++.|+.+ ..|.+||+.+.+-...... ..
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~ 127 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCC
Confidence 5788888876544322111 0 1222222 56777787754 2477888887653322211 11
Q ss_pred cEEEEEEccCCCEEEEEecC-----------CcEEEEeCCCCeee
Q 005646 438 IVTAVCYRPDGQGGIVGSMM-----------GDCRFYNVSDNHLE 471 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~d-----------g~i~iwd~~~~~~~ 471 (686)
.....+..-++++++.|+.+ ..+.+||..+++..
T Consensus 128 R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 128 RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 11112223356777777754 24788998877654
No 473
>PLN02193 nitrile-specifier protein
Probab=66.53 E-value=2.1e+02 Score=31.58 Aligned_cols=102 Identities=10% Similarity=0.150 Sum_probs=55.1
Q ss_pred EEEEEECC-----CcEEEEECCCCeeeeEeeC---C--CCeEEEEEeecCCCEEEEEEcCC-----cEEEEecCCCcEEE
Q 005646 367 YLLSASID-----KTVRLWRVGNDHCLRVFPH---S--NYVTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSCHVVD 431 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~~~~~~~h---~--~~V~~v~fsp~~~~~l~sgs~Dg-----~V~iwd~~~~~~~~ 431 (686)
+++.|+.+ ..+..+|+.+.+....-.. . ..-.+++. .++.+++.|+.++ .+..||+.+.+-..
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 45555544 3578888887765432211 1 11122222 1567777777653 36678877665332
Q ss_pred Eec------cCCcEEEEEEccCCCEEEEEecC----CcEEEEeCCCCeeee
Q 005646 432 WVD------IRQIVTAVCYRPDGQGGIVGSMM----GDCRFYNVSDNHLEL 472 (686)
Q Consensus 432 ~~~------~~~~V~~v~~spdg~~l~~gs~d----g~i~iwd~~~~~~~~ 472 (686)
... .+.....+. -+++.++.++.+ ..+.+||+.+++...
T Consensus 309 ~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 309 CSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred CCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEE
Confidence 111 111111222 367777777765 458999998877643
No 474
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=66.22 E-value=1.9e+02 Score=30.84 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=42.9
Q ss_pred EEEEEECCCcEEEEECCC--Ceee--eEeeCCCCeEEEEEeecCCCEEEEEEcCC-----------cEEEEecCCCcEEE
Q 005646 367 YLLSASIDKTVRLWRVGN--DHCL--RVFPHSNYVTCVHFNPVDDNYFISGSIDG-----------KVRIWAVLSCHVVD 431 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~--~~~~--~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg-----------~V~iwd~~~~~~~~ 431 (686)
+++.|..+..+.++|+.. .+.. ..+............- ++.+++.|+.+. .+..||..+.+-..
T Consensus 42 yv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~-~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~ 120 (376)
T PRK14131 42 YVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFI-DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQK 120 (376)
T ss_pred EEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEE-CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEe
Confidence 444454455677788753 2222 1121111111111222 667778777542 47778887765333
Q ss_pred Eecc-CCcEE-EEEEc-cCCCEEEEEecC
Q 005646 432 WVDI-RQIVT-AVCYR-PDGQGGIVGSMM 457 (686)
Q Consensus 432 ~~~~-~~~V~-~v~~s-pdg~~l~~gs~d 457 (686)
.... ..... ..+.. -+++..+.|+.+
T Consensus 121 ~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 121 LDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 2211 11111 12222 477788888754
No 475
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.48 E-value=1.5e+02 Score=36.19 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.7
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+++..++++..||.+.+||.+.+.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCc
Confidence 4579999999999999999999975
No 476
>PF15477 SMAP: Small acidic protein family
Probab=64.84 E-value=4.2 Score=31.54 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhcCCC
Q 005646 51 VKERRSKFLDWMEAGL 66 (686)
Q Consensus 51 ~~~~~~~~~~~~~~~~ 66 (686)
=.||.+||||-||.-.
T Consensus 10 d~~rk~KFlRLMG~kk 25 (69)
T PF15477_consen 10 DSERKEKFLRLMGGKK 25 (69)
T ss_pred CHHHHHHHHHHhcCCC
Confidence 4799999999999876
No 477
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=64.77 E-value=25 Score=23.30 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred EEEEeccCCcEEEEEEccCCCEEEEEecC---CcEEEE
Q 005646 429 VVDWVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRFY 463 (686)
Q Consensus 429 ~~~~~~~~~~V~~v~~spdg~~l~~gs~d---g~i~iw 463 (686)
+.........-....|+|||+.|+..+.. |...||
T Consensus 1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 478
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=64.76 E-value=1.1e+02 Score=31.91 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=61.1
Q ss_pred CCeEEEEEeecCCCEEEEEEcCCc------EEEEecCC-----CcE-----EEEeccCC--------cEEEEEEccCCCE
Q 005646 395 NYVTCVHFNPVDDNYFISGSIDGK------VRIWAVLS-----CHV-----VDWVDIRQ--------IVTAVCYRPDGQG 450 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~Dg~------V~iwd~~~-----~~~-----~~~~~~~~--------~V~~v~~spdg~~ 450 (686)
+.+..|.+.| ++..+++.+.+|. +..+++.. ..+ +.+....+ ...+|++.++|.+
T Consensus 20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 5667888887 6667777777777 55555543 111 11111111 2447888778887
Q ss_pred EEEEecC------CcEEEEeCCCCeeeeeeeEEeec-------cccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 451 GIVGSMM------GDCRFYNVSDNHLELDAEICVHS-------KKKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 451 l~~gs~d------g~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
+++.-.+ ..|+-++.. ++......+...- ........+-+|+++| ++..|+++
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~ 164 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAA 164 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEE
Confidence 7776556 678888876 4443222111110 2234556788888888 44444443
No 479
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=63.68 E-value=1.9e+02 Score=30.09 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=59.7
Q ss_pred CeeEEEeeCCC-EEEEEECC------CcEEEEECCCCeeeeEe----------------eCCCCeEEEEEeecCCCEEEE
Q 005646 356 EILDLSWSKNN-YLLSASID------KTVRLWRVGNDHCLRVF----------------PHSNYVTCVHFNPVDDNYFIS 412 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~D------g~V~iWd~~~~~~~~~~----------------~h~~~V~~v~fsp~~~~~l~s 412 (686)
..-+|++.+++ ++++.=.+ ..|+.++.. ++.+..+ ..+....+|+++| +++.|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEE
Confidence 44577776677 55555555 678888866 5544333 1456789999999 8887766
Q ss_pred EEc-----CC--c-------EEEE--ecCC-CcEE----EEec------cCCcEEEEEEccCCCEEEE
Q 005646 413 GSI-----DG--K-------VRIW--AVLS-CHVV----DWVD------IRQIVTAVCYRPDGQGGIV 453 (686)
Q Consensus 413 gs~-----Dg--~-------V~iw--d~~~-~~~~----~~~~------~~~~V~~v~~spdg~~l~~ 453 (686)
+.. |+ . +||+ |..+ +... .... ....|+.+.+-+++++++.
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 653 22 1 5555 4443 2111 1112 3456889999999987765
No 480
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=63.12 E-value=23 Score=23.64 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=26.7
Q ss_pred CCCEEEE-EEcCCcEEEEecCCCcEEEEeccCCcEEEEEE
Q 005646 406 DDNYFIS-GSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCY 444 (686)
Q Consensus 406 ~~~~l~s-gs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~ 444 (686)
++++|++ ...+++|.++|..+++.+...........++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5555555 44578999999999888766655554555554
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=62.97 E-value=82 Score=31.26 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=47.7
Q ss_pred EEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEc-C--CcEEEEecCC-CcEEEEe------ccCCcEEEEEEcc
Q 005646 378 RLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI-D--GKVRIWAVLS-CHVVDWV------DIRQIVTAVCYRP 446 (686)
Q Consensus 378 ~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~-D--g~V~iwd~~~-~~~~~~~------~~~~~V~~v~~sp 446 (686)
.+||+.+++...... ......+-+|.| +|++|++|+. + ..+|+++..+ .....|. .....--.+..-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 478888775533221 333444456777 9999999875 2 4588888654 1111122 1222233455668
Q ss_pred CCCEEEEEecC
Q 005646 447 DGQGGIVGSMM 457 (686)
Q Consensus 447 dg~~l~~gs~d 457 (686)
||+.|++|+..
T Consensus 128 DG~vlIvGG~~ 138 (243)
T PF07250_consen 128 DGRVLIVGGSN 138 (243)
T ss_pred CCCEEEEeCcC
Confidence 99999999877
No 482
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=60.92 E-value=1.9e+02 Score=31.31 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=25.4
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
..|.+++..+..+.+++.+.+|.|.+|++..+.
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~ 222 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGG 222 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS-
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCCC
Confidence 448889999988999999999999999997543
No 483
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=59.08 E-value=3.3e+02 Score=31.29 Aligned_cols=31 Identities=23% Similarity=0.575 Sum_probs=28.5
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEee
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~ 280 (686)
...|-.+.|.++++.+++.-.+|.|.+||+.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 5679999999999999999999999999993
No 484
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=58.94 E-value=81 Score=31.28 Aligned_cols=121 Identities=11% Similarity=0.117 Sum_probs=67.9
Q ss_pred EEEecCCCcEEEEecc-CCcEEEEEEccCCCEEEEEec-C--CcEEEEeCCC--CeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 420 RIWAVLSCHVVDWVDI-RQIVTAVCYRPDGQGGIVGSM-M--GDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 420 ~iwd~~~~~~~~~~~~-~~~V~~v~~spdg~~l~~gs~-d--g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
.+||+.+++.....-. ..-..+-.+-|||+++.+|+. + ..+++|+... ..... ............-....
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w----~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDW----TESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCc----eECcccccCCCccccce
Confidence 4788888876543322 222333467789999999866 2 3488888654 01111 00000122334555667
Q ss_pred EeCCCCCeEEEEeCCCc-EEEEeCCc------------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 494 FLPQDSSKVMVSCADSQ-VRILQGPN------------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~-I~iwd~~~------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..| +++.+++|+.... ..+|.... .+...|||+.++.+..++ .|||..+.+
T Consensus 125 ~L~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 125 TLP-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred ECC-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCe
Confidence 777 7788888876643 33443210 123345999998887764 455766653
No 485
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=57.55 E-value=2.5e+02 Score=29.37 Aligned_cols=178 Identities=8% Similarity=0.026 Sum_probs=0.0
Q ss_pred EEEeeCCCEEEEEECC-----------CcEEEEECCCCeeeeEe-eCCCCeEEEEEe-ecCCCEEEEEEcC---------
Q 005646 359 DLSWSKNNYLLSASID-----------KTVRLWRVGNDHCLRVF-PHSNYVTCVHFN-PVDDNYFISGSID--------- 416 (686)
Q Consensus 359 ~l~~s~~~~L~s~s~D-----------g~V~iWd~~~~~~~~~~-~h~~~V~~v~fs-p~~~~~l~sgs~D--------- 416 (686)
.++...+.+.+.|+.+ ..+..||..+.+-...- .......+.+.. -.++.+++.|+.+
T Consensus 58 ~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~ 137 (346)
T TIGR03547 58 VAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFA 137 (346)
T ss_pred eEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHh
Q ss_pred ------------------------------CcEEEEecCCCcEEEEeccC--CcEEEEEEccCCCEEEEEecC------C
Q 005646 417 ------------------------------GKVRIWAVLSCHVVDWVDIR--QIVTAVCYRPDGQGGIVGSMM------G 458 (686)
Q Consensus 417 ------------------------------g~V~iwd~~~~~~~~~~~~~--~~V~~v~~spdg~~l~~gs~d------g 458 (686)
..|.+||..+.+-....... ......+..-++++++.|+.+ .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 217 (346)
T TIGR03547 138 DLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTA 217 (346)
T ss_pred hHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccch
Q ss_pred cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC----------------------CcEEEEeC
Q 005646 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD----------------------SQVRILQG 516 (686)
Q Consensus 459 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D----------------------~~I~iwd~ 516 (686)
.+.+|++............+............+....--++.++++|+.+ ..+.+||.
T Consensus 218 ~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~ 297 (346)
T TIGR03547 218 EVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYAL 297 (346)
T ss_pred heEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEe
Q ss_pred CcceeEcC----------------CCCEEEEEeCCCc
Q 005646 517 PNVIGKYK----------------DGKHIVSAGEDSN 537 (686)
Q Consensus 517 ~~~~~~~~----------------dg~~l~sgs~Dg~ 537 (686)
.+. .|.. ++++++.|+.+..
T Consensus 298 ~~~-~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~~ 333 (346)
T TIGR03547 298 DNG-KWSKVGKLPQGLAYGVSVSWNNGVLLIGGENSG 333 (346)
T ss_pred cCC-cccccCCCCCCceeeEEEEcCCEEEEEeccCCC
No 486
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=57.52 E-value=1.5e+02 Score=34.17 Aligned_cols=107 Identities=11% Similarity=0.122 Sum_probs=68.4
Q ss_pred EEEEEeecCCCEEEEEEcCCc-----EEEEecCC---CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 398 TCVHFNPVDDNYFISGSIDGK-----VRIWAVLS---CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~-----V~iwd~~~---~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
..+.|-| .|..++|-..||. |+.+.-+. |..-...+....+..++|+-....++++ ..+.+.+|-..+-+
T Consensus 250 ~~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH 327 (1243)
T ss_pred hcccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence 3478999 8999999776653 55554332 2221222344556778887766666554 45789999988777
Q ss_pred eeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
.-++.++... .+.-+.|+|.....|+........++.
T Consensus 328 WYLK~e~~ip--------~~s~vkwhpe~~nTl~f~d~~~I~~V~ 364 (1243)
T COG5290 328 WYLKVERQIP--------GISYVKWHPEEKNTLLFRDGERILRVF 364 (1243)
T ss_pred EEEEEeecCC--------CcceeeeccccCcEEEEecCCeEEEEE
Confidence 6655444332 367788999777777776666555543
No 487
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=55.92 E-value=2.8e+02 Score=29.49 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=21.4
Q ss_pred CcEEEEECCCCeeeeEee--C-CCCeEEEEEeecCCCEEEEEEc
Q 005646 375 KTVRLWRVGNDHCLRVFP--H-SNYVTCVHFNPVDDNYFISGSI 415 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~--h-~~~V~~v~fsp~~~~~l~sgs~ 415 (686)
..|.+||..+.+....-. . ...-.++... ++++++.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~--~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK--GNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEE--CCEEEEEeee
Confidence 458899988876544322 1 1112233332 5677777764
No 488
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=55.61 E-value=48 Score=22.01 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=25.9
Q ss_pred CCC-EEE-EEECCCcEEEEECCCCeeeeEeeCCCCeEEEEE
Q 005646 364 KNN-YLL-SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHF 402 (686)
Q Consensus 364 ~~~-~L~-s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~f 402 (686)
|++ +|+ +.-.+++|.++|..+++.+..+.-......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 345 444 444688999999999888887764443444444
No 489
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=55.31 E-value=32 Score=28.20 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=30.2
Q ss_pred EcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEE
Q 005646 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG 454 (686)
Q Consensus 414 s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~g 454 (686)
..+|.+.-||..+++...+...-.-.+.|++++|++.++++
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 34688999999999876555555567899999999988776
No 490
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=54.78 E-value=1.5e+02 Score=30.07 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=60.5
Q ss_pred CcEEEEecCCCcEEEEe-ccCCcEEEEEEccCCCEEEEEe------cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 417 GKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGS------MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~~gs------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
..|++||..+.+-...- +..+.|+++.|..+.+.++.|. ....+..||+.+........ .....-.++|
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~----~~s~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG----GSSNSIPGPV 91 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC----cccccCCCcE
Confidence 46999999887654332 3577899999997777777764 35568899998776532110 0001223678
Q ss_pred EEEEEeCCCCCeEEEEeC----CCcEEEEeCCc
Q 005646 490 TGFQFLPQDSSKVMVSCA----DSQVRILQGPN 518 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~----D~~I~iwd~~~ 518 (686)
+.+.+...+...+.+++. +..|..||+.+
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 888887656555543332 33455666443
No 491
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=52.90 E-value=2.9e+02 Score=30.55 Aligned_cols=129 Identities=13% Similarity=0.001 Sum_probs=0.0
Q ss_pred cccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCe----EEEEEeecCCCEEEEEE
Q 005646 339 VFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYV----TCVHFNPVDDNYFISGS 414 (686)
Q Consensus 339 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V----~~v~fsp~~~~~l~sgs 414 (686)
.++..+.....+.........+...++|.|+.++. ..+..+|+. |+.+..+.....- ..+...| +|++|+.+.
T Consensus 132 ~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~ 208 (477)
T PF05935_consen 132 LIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NGNLLILAS 208 (477)
T ss_dssp EEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEE
T ss_pred EECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECC-CCCEEEEEe
Q ss_pred --------------cCCcEEEEecCCCcEEEEeccCCc----------------------------EEEEEEcc-CCCEE
Q 005646 415 --------------IDGKVRIWAVLSCHVVDWVDIRQI----------------------------VTAVCYRP-DGQGG 451 (686)
Q Consensus 415 --------------~Dg~V~iwd~~~~~~~~~~~~~~~----------------------------V~~v~~sp-dg~~l 451 (686)
.|. |..+| .+++++........ ++++.+.+ ++.++
T Consensus 209 ~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~ii 286 (477)
T PF05935_consen 209 ETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSII 286 (477)
T ss_dssp ETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEE
T ss_pred ecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEE
Q ss_pred EEEecCCcEEEEeCCCCeeee
Q 005646 452 IVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 452 ~~gs~dg~i~iwd~~~~~~~~ 472 (686)
+++-.-..|...|..++++..
T Consensus 287 vSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 287 VSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp EEETTT-EEEEEE-TTS-EEE
T ss_pred EEcCcceEEEEEECCCCcEEE
No 492
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=52.84 E-value=2.8e+02 Score=28.55 Aligned_cols=113 Identities=10% Similarity=0.004 Sum_probs=57.5
Q ss_pred CCCCeeEEEeeCCC-EE-EEEECCCcEEEEECCCCee----------------eeEeeCCCCeEEEEEeecCCCEEEEEE
Q 005646 353 HSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHC----------------LRVFPHSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~----------------~~~~~h~~~V~~v~fsp~~~~~l~sgs 414 (686)
+...|.++...+.. .| +.++....++++++..-.. ...+.|.....-....-.....+++++
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 45688899888766 33 3444444599999843221 122334443333333321223456666
Q ss_pred cCCcEEEEecCCC--cEEEEe-------ccCCcEEEEEEccC--CCEEEEEecCCcEEEEeC
Q 005646 415 IDGKVRIWAVLSC--HVVDWV-------DIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 415 ~Dg~V~iwd~~~~--~~~~~~-------~~~~~V~~v~~spd--g~~l~~gs~dg~i~iwd~ 465 (686)
...+|.++..... +..... ....++..+..+++ ...+++|+..+...++++
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~ 182 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQF 182 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEE
Confidence 6777887655332 111111 11223444444443 567888877644555555
No 493
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=51.75 E-value=4.8e+02 Score=30.95 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=89.7
Q ss_pred cCCCCeeEEEee---C--CC--EEEEEECCCcEEEEEC------CC---------CeeeeEee----CCCCeEEEEEeec
Q 005646 352 GHSGEILDLSWS---K--NN--YLLSASIDKTVRLWRV------GN---------DHCLRVFP----HSNYVTCVHFNPV 405 (686)
Q Consensus 352 ~h~~~V~~l~~s---~--~~--~L~s~s~Dg~V~iWd~------~~---------~~~~~~~~----h~~~V~~v~fsp~ 405 (686)
.-..+|..+.|. . +. .++..-....+.|+.. .. ..++..+. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888887 2 11 3455555566677661 11 12334444 3457889999998
Q ss_pred CCCEEEEEEcCCcEEEEecCCCc------EEEEecc----------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCH------VVDWVDI----------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~------~~~~~~~----------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
+...||.....|.-.||++.... ....... ......+.|.++-+.|++++ ...+.++|+.++.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCC
Confidence 88899999999999999992111 1111011 12234788988888888874 4678999998765
Q ss_pred eeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
.... + .......+|..+.-+|.+...++
T Consensus 236 ~~~~--l----~~~~~~~~IlDv~~~~~~~~~~F 263 (765)
T PF10214_consen 236 QTEY--L----VTAKTWSWILDVKRSPDNPSHVF 263 (765)
T ss_pred ccch--h----ccCCChhheeeEEecCCccceEE
Confidence 4221 0 01123356888888885444433
No 494
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=50.08 E-value=3.4e+02 Score=28.72 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=69.3
Q ss_pred eCCCEEEEEECCCcEEEEECCCCeeeeEeeCC---CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC--
Q 005646 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ-- 437 (686)
Q Consensus 363 s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~---~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~-- 437 (686)
..++.++.+..+|.|.-.|..++..+...... ..+.+-.+.. +++ ++.++.+|.++.+|..+++.+-......
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 34567777788888888888888877655533 2333333433 444 7788889999999998888775544444
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
.+..-..-.++ .+..++.+|.+.-.|..++.....
T Consensus 144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEE
Confidence 12222222243 344444778888888887776554
No 495
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=49.76 E-value=2.7e+02 Score=27.61 Aligned_cols=145 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc----CCCEEEEEec--CCcEEEEeCCCCe
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP----DGQGGIVGSM--MGDCRFYNVSDNH 469 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp----dg~~l~~gs~--dg~i~iwd~~~~~ 469 (686)
.|+--.-+| +...+++.-..+-+++||+...++......+-.--.+.+.- ..--+++++. ...|.+|.+....
T Consensus 57 AIwVh~t~P-~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~ 135 (364)
T COG4247 57 AIWVHATNP-DKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNP 135 (364)
T ss_pred ceEeccCCc-CcceEEEeeccCCeEEEecCCCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCc
Q ss_pred eeeeeeEEeeccccCCCCCeEEEEEeCCCCC----eEEEEeCCCcEEEEeCCcc---------------------eeEcC
Q 005646 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSS----KVMVSCADSQVRILQGPNV---------------------IGKYK 524 (686)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~----~l~~~s~D~~I~iwd~~~~---------------------~~~~~ 524 (686)
..+................+.++++.. +.. .+++...+|.|+-|.+... +....
T Consensus 136 ~~L~sitD~n~p~ss~~s~~YGl~lyr-s~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDd 214 (364)
T COG4247 136 QYLESITDSNAPYSSSSSSAYGLALYR-SPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADD 214 (364)
T ss_pred cceeeccCCCCccccCcccceeeEEEe-cCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeecc
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 005646 525 DGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 525 dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.-..|..+-+| +-||.+.
T Consensus 215 EtG~LYIaeEd--vaiWK~~ 232 (364)
T COG4247 215 ETGFLYIAEED--VAIWKYE 232 (364)
T ss_pred ccceEEEeecc--ceeeecc
No 496
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=48.22 E-value=1.6e+02 Score=31.92 Aligned_cols=21 Identities=10% Similarity=0.306 Sum_probs=16.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 005646 525 DGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 525 dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
..+.|++...+|.|.+|++..
T Consensus 200 ~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 200 SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp TTTEEEEEESSE-EEEEEE-S
T ss_pred CcCEEEEEeCCCcEEEEEEeC
Confidence 558999999999999999975
No 497
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=47.97 E-value=44 Score=20.58 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=20.4
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEe
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYN 464 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd 464 (686)
+.|.+++..+. ++++++..+.+|+|.
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence 35677777654 899999999999984
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=47.22 E-value=5.9e+02 Score=30.75 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=67.8
Q ss_pred EeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--C-CCCeEEEEEeecCCCEEEEEEcCCcEEE--EecCCCcEEEEec
Q 005646 361 SWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--H-SNYVTCVHFNPVDDNYFISGSIDGKVRI--WAVLSCHVVDWVD 434 (686)
Q Consensus 361 ~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h-~~~V~~v~fsp~~~~~l~sgs~Dg~V~i--wd~~~~~~~~~~~ 434 (686)
+..|-+ +++ ++....+++||+...+.++... + ...|+.+++ .+..++.|...-.|.+ |+-...+.+.+.+
T Consensus 940 Ai~~f~~~~L-agvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 940 AICPFQGRVL-AGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred EEeccCCEEE-EecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 345554 444 3456799999999998887665 3 677888887 4577777776656655 4444555555554
Q ss_pred c--CCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 435 I--RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 435 ~--~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
- +..|+++.+- |-..+|.+..=|.+.+-.+..
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 3 3456666554 445788888888888877653
No 499
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=46.83 E-value=5.6e+02 Score=30.35 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=77.7
Q ss_pred CCeEEeccC---CCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCe-----eeeEe-eCC----------CCeEEEEEe
Q 005646 345 KPLHEFHGH---SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDH-----CLRVF-PHS----------NYVTCVHFN 403 (686)
Q Consensus 345 ~~~~~l~~h---~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~-----~~~~~-~h~----------~~V~~v~fs 403 (686)
.++..+..+ ..+..+++|+|.. .||.....|...||++.... .+... .+. +....|.|.
T Consensus 133 ~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~ 212 (765)
T PF10214_consen 133 NPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV 212 (765)
T ss_pred ceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec
Confidence 455555422 2367899999976 99999999999999992111 11111 122 233478888
Q ss_pred ecCCCEEEEEEcCCcEEEEecCCCcEEE---EeccCCcEEEEEEccC--CCEEEEEecCCcEEEEeCCCC
Q 005646 404 PVDDNYFISGSIDGKVRIWAVLSCHVVD---WVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 404 p~~~~~l~sgs~Dg~V~iwd~~~~~~~~---~~~~~~~V~~v~~spd--g~~l~~gs~dg~i~iwd~~~~ 468 (686)
+ +.+.|+.++. ..+.++|+.+..... .......|..+.-+|. +..++. ....|...++...
T Consensus 213 ~-~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 213 S-DSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred C-CCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 7 7777777764 578899999876533 3334567888888886 333333 2357888887763
No 500
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=46.26 E-value=5.1e+02 Score=29.77 Aligned_cols=117 Identities=9% Similarity=0.139 Sum_probs=66.0
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeee--eEee--CCCCeEEEEEeec-----CCCEEEEEEc-C---CcE
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCL--RVFP--HSNYVTCVHFNPV-----DDNYFISGSI-D---GKV 419 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~--~~~~--h~~~V~~v~fsp~-----~~~~l~sgs~-D---g~V 419 (686)
...|..+.+.+++ .++..-.+|.|.+||...+... ..+. +...|.-=.|-+. ..+++++-+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5788999999877 8889999999999999333211 1222 2221111123221 2355555554 3 246
Q ss_pred EEEec--CCCcEEEEe---ccCCc--EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 420 RIWAV--LSCHVVDWV---DIRQI--VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 420 ~iwd~--~~~~~~~~~---~~~~~--V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
+++.+ ....+.... ..... =..+||. +|+.... .+++|.+|++...+.+..
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~t 266 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKT 266 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEE
Confidence 77887 444444332 11111 2234444 6655444 678999999977655443
Done!