Query 005646
Match_columns 686
No_of_seqs 823 out of 4754
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 03:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.8E-44 6.2E-49 411.3 44.5 424 205-679 22-609 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 1.5E-40 5.2E-45 375.6 47.3 431 200-678 13-577 (577)
3 1nr0_A Actin interacting prote 100.0 6.6E-38 2.2E-42 357.1 40.0 382 206-625 64-609 (611)
4 1vyh_C Platelet-activating fac 100.0 6.9E-38 2.4E-42 339.1 34.6 268 197-543 102-409 (410)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-37 5.6E-42 382.5 42.2 437 201-680 613-1157(1249)
6 1got_B GT-beta; complex (GTP-b 100.0 1.1E-36 3.6E-41 321.1 40.1 269 201-542 53-340 (340)
7 1vyh_C Platelet-activating fac 100.0 3E-37 1E-41 334.1 36.1 233 243-546 101-370 (410)
8 3ow8_A WD repeat-containing pr 100.0 3.4E-37 1.2E-41 322.2 35.3 267 201-544 30-320 (321)
9 2ymu_A WD-40 repeat protein; u 100.0 2.8E-36 9.7E-41 340.6 42.2 363 207-624 186-577 (577)
10 3ow8_A WD repeat-containing pr 100.0 1.8E-36 6.2E-41 316.7 36.7 233 245-547 27-281 (321)
11 4gqb_B Methylosome protein 50; 100.0 8.5E-37 2.9E-41 322.2 34.0 276 204-547 33-333 (344)
12 3frx_A Guanine nucleotide-bind 100.0 2.1E-36 7.2E-41 315.9 35.7 272 200-546 14-318 (319)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-36 6.3E-41 320.0 34.2 276 206-547 21-337 (345)
14 1pgu_A Actin interacting prote 100.0 7.6E-36 2.6E-40 339.1 40.6 425 205-679 22-612 (615)
15 2xzm_R RACK1; ribosome, transl 100.0 4.9E-36 1.7E-40 316.4 35.1 275 199-546 17-341 (343)
16 2hes_X YDR267CP; beta-propelle 100.0 6.5E-36 2.2E-40 313.8 35.5 284 199-545 10-328 (330)
17 3frx_A Guanine nucleotide-bind 100.0 1.3E-35 4.3E-40 310.0 36.8 236 243-546 10-268 (319)
18 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-35 5.4E-40 312.8 37.4 238 243-547 8-285 (345)
19 2ynn_A Coatomer subunit beta'; 100.0 1.3E-35 4.4E-40 307.7 35.9 266 201-545 11-302 (304)
20 2ynn_A Coatomer subunit beta'; 100.0 1.3E-35 4.5E-40 307.6 35.5 235 243-547 6-261 (304)
21 2pbi_B Guanine nucleotide-bind 100.0 2.4E-35 8.4E-40 312.6 37.7 273 200-542 61-354 (354)
22 4g56_B MGC81050 protein; prote 100.0 4.2E-36 1.4E-40 318.8 31.7 256 216-547 19-303 (357)
23 3iz6_a 40S ribosomal protein R 100.0 2E-36 6.9E-41 324.1 29.2 283 201-547 64-377 (380)
24 2pbi_B Guanine nucleotide-bind 100.0 3.1E-35 1.1E-39 311.8 37.1 232 244-547 58-317 (354)
25 1got_B GT-beta; complex (GTP-b 100.0 2.3E-35 7.7E-40 310.9 35.1 269 243-624 48-340 (340)
26 4g56_B MGC81050 protein; prote 100.0 1.1E-35 3.7E-40 315.7 32.6 273 205-547 46-345 (357)
27 2oaj_A Protein SNI1; WD40 repe 100.0 5E-36 1.7E-40 354.9 32.2 198 201-471 15-246 (902)
28 1erj_A Transcriptional repress 100.0 5.3E-35 1.8E-39 314.6 37.0 252 248-547 62-343 (393)
29 4ery_A WD repeat-containing pr 100.0 1.2E-34 4.2E-39 301.0 38.0 233 244-547 17-270 (312)
30 3iz6_a 40S ribosomal protein R 100.0 6.7E-36 2.3E-40 320.1 29.0 235 243-547 59-331 (380)
31 2xzm_R RACK1; ribosome, transl 100.0 3.1E-35 1E-39 310.3 32.3 302 243-679 14-338 (343)
32 1erj_A Transcriptional repress 100.0 1.4E-34 4.9E-39 311.2 35.2 281 201-546 62-390 (393)
33 3sfz_A APAF-1, apoptotic pepti 100.0 4.5E-34 1.5E-38 351.9 44.4 433 201-679 697-1247(1249)
34 4gqb_B Methylosome protein 50; 100.0 1.1E-34 3.9E-39 306.0 33.0 241 203-518 82-331 (344)
35 4ery_A WD repeat-containing pr 100.0 6.1E-34 2.1E-38 295.7 37.2 266 201-544 21-311 (312)
36 3dm0_A Maltose-binding peripla 100.0 1.7E-33 5.9E-38 325.6 39.7 271 198-544 377-692 (694)
37 3vl1_A 26S proteasome regulato 100.0 3.5E-34 1.2E-38 309.9 31.1 264 206-547 61-367 (420)
38 2pm9_A Protein WEB1, protein t 100.0 8.5E-34 2.9E-38 306.2 33.4 344 205-627 16-414 (416)
39 2hes_X YDR267CP; beta-propelle 100.0 9.1E-34 3.1E-38 297.4 30.7 303 243-679 7-326 (330)
40 2pm7_B Protein transport prote 100.0 2.4E-33 8.4E-38 289.5 32.9 236 245-545 4-285 (297)
41 1gxr_A ESG1, transducin-like e 100.0 1.3E-32 4.4E-37 287.4 38.6 269 201-543 49-335 (337)
42 1r5m_A SIR4-interacting protei 100.0 2.9E-33 9.9E-38 302.0 33.4 267 206-547 50-363 (425)
43 1gxr_A ESG1, transducin-like e 100.0 9.1E-33 3.1E-37 288.5 34.6 265 205-547 13-298 (337)
44 4aow_A Guanine nucleotide-bind 100.0 1.6E-32 5.3E-37 287.5 35.5 297 200-547 35-339 (340)
45 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-33 4.6E-38 313.3 28.7 244 211-545 171-428 (524)
46 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-31 4.3E-36 315.3 43.5 417 201-680 11-504 (814)
47 4aow_A Guanine nucleotide-bind 100.0 1.3E-32 4.3E-37 288.3 30.9 211 243-547 31-248 (340)
48 2oaj_A Protein SNI1; WD40 repe 100.0 3.8E-33 1.3E-37 330.3 29.7 437 207-681 64-783 (902)
49 3gre_A Serine/threonine-protei 100.0 5.3E-33 1.8E-37 302.8 28.1 262 206-547 32-361 (437)
50 3dm0_A Maltose-binding peripla 100.0 4E-32 1.4E-36 314.2 36.7 236 244-547 376-634 (694)
51 3zwl_B Eukaryotic translation 100.0 1E-31 3.4E-36 284.1 36.8 230 243-544 25-289 (369)
52 4e54_B DNA damage-binding prot 100.0 8.2E-33 2.8E-37 301.6 29.0 310 244-680 113-429 (435)
53 3v7d_B Cell division control p 100.0 3.4E-31 1.2E-35 290.8 40.8 264 199-547 117-423 (464)
54 3mkq_A Coatomer beta'-subunit; 100.0 3.1E-32 1.1E-36 320.4 34.7 235 243-547 6-261 (814)
55 1sq9_A Antiviral protein SKI8; 100.0 4.6E-32 1.6E-36 290.8 31.7 286 200-546 13-396 (397)
56 3ei3_B DNA damage-binding prot 100.0 1.5E-31 5.1E-36 286.0 35.2 276 198-545 68-382 (383)
57 3k26_A Polycomb protein EED; W 100.0 2.5E-32 8.4E-37 288.7 27.9 277 201-545 16-366 (366)
58 3dwl_C Actin-related protein 2 100.0 9.6E-33 3.3E-37 294.3 24.6 241 205-516 15-279 (377)
59 3dwl_C Actin-related protein 2 100.0 1.1E-32 3.8E-37 293.8 24.9 236 246-545 7-281 (377)
60 3bg1_A Protein SEC13 homolog; 100.0 1E-32 3.4E-37 287.6 23.3 236 244-545 7-293 (316)
61 3i2n_A WD repeat-containing pr 100.0 5.7E-32 1.9E-36 285.1 29.0 274 202-547 17-355 (357)
62 4e54_B DNA damage-binding prot 100.0 1.9E-32 6.5E-37 298.7 26.2 277 201-547 117-432 (435)
63 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-31 8.1E-36 282.2 33.2 266 206-547 13-363 (372)
64 3ei3_B DNA damage-binding prot 100.0 4.5E-31 1.5E-35 282.2 33.7 307 244-680 67-381 (383)
65 2pm7_B Protein transport prote 100.0 4.9E-31 1.7E-35 272.2 32.4 247 201-517 7-284 (297)
66 4h5i_A Guanine nucleotide-exch 100.0 6.3E-32 2.2E-36 287.5 26.4 297 205-563 18-361 (365)
67 3vl1_A 26S proteasome regulato 100.0 8.7E-31 3E-35 283.2 35.8 261 207-545 103-419 (420)
68 2pm9_A Protein WEB1, protein t 100.0 3.3E-32 1.1E-36 293.7 24.3 277 206-546 72-415 (416)
69 1k8k_C P40, ARP2/3 complex 41 100.0 6.1E-31 2.1E-35 279.0 33.2 237 246-545 4-274 (372)
70 3k26_A Polycomb protein EED; W 100.0 6.2E-31 2.1E-35 277.9 32.8 242 246-547 14-320 (366)
71 4a11_B DNA excision repair pro 100.0 7.4E-32 2.5E-36 289.5 25.6 348 220-680 20-404 (408)
72 3jrp_A Fusion protein of prote 100.0 5.7E-31 2E-35 279.6 31.9 239 244-547 5-289 (379)
73 3zwl_B Eukaryotic translation 100.0 6.7E-30 2.3E-34 270.1 38.7 290 200-547 29-348 (369)
74 3odt_A Protein DOA1; ubiquitin 100.0 3.1E-30 1.1E-34 266.5 35.1 266 200-547 15-298 (313)
75 4aez_A CDC20, WD repeat-contai 100.0 2.3E-30 7.8E-35 279.0 35.3 280 206-547 96-382 (401)
76 1pgu_A Actin interacting prote 100.0 2.4E-30 8.1E-35 293.8 37.0 388 207-626 70-613 (615)
77 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.3E-29 7.8E-34 275.0 42.8 316 185-546 99-443 (445)
78 3bg1_A Protein SEC13 homolog; 100.0 1.7E-31 6E-36 278.2 23.8 261 201-533 11-313 (316)
79 3v7d_B Cell division control p 100.0 2.9E-30 1E-34 283.4 34.7 306 244-678 115-460 (464)
80 3f3f_A Nucleoporin SEH1; struc 100.0 4.6E-30 1.6E-34 268.3 31.3 239 244-547 5-339 (351)
81 4gga_A P55CDC, cell division c 100.0 2.7E-29 9.4E-34 272.4 37.8 271 215-547 117-397 (420)
82 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-29 4.3E-34 277.0 35.0 312 244-681 112-442 (445)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 2.2E-30 7.7E-35 279.0 28.3 264 216-547 50-344 (402)
84 1r5m_A SIR4-interacting protei 100.0 1.4E-29 4.8E-34 273.0 34.3 293 206-544 113-424 (425)
85 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-29 4.1E-34 276.5 33.5 259 201-547 131-416 (435)
86 1sq9_A Antiviral protein SKI8; 100.0 7.8E-30 2.7E-34 273.4 31.3 238 244-547 10-324 (397)
87 3dw8_B Serine/threonine-protei 100.0 6.9E-30 2.4E-34 278.4 30.9 308 206-543 33-444 (447)
88 4gga_A P55CDC, cell division c 100.0 4.9E-29 1.7E-33 270.4 36.8 227 252-547 107-355 (420)
89 3gre_A Serine/threonine-protei 100.0 3.5E-30 1.2E-34 280.5 27.8 282 202-542 62-437 (437)
90 4ggc_A P55CDC, cell division c 100.0 5.7E-29 2E-33 257.8 34.7 277 206-546 30-316 (318)
91 3i2n_A WD repeat-containing pr 100.0 3.4E-30 1.2E-34 271.5 25.8 291 244-628 12-354 (357)
92 3dw8_B Serine/threonine-protei 100.0 3.5E-29 1.2E-33 272.8 33.4 245 248-547 26-375 (447)
93 4a11_B DNA excision repair pro 100.0 5.8E-29 2E-33 266.9 33.9 279 201-547 41-367 (408)
94 1yfq_A Cell cycle arrest prote 100.0 2.9E-29 9.9E-34 263.1 29.7 268 202-543 10-322 (342)
95 3odt_A Protein DOA1; ubiquitin 100.0 7.2E-29 2.5E-33 256.2 31.6 267 243-629 11-298 (313)
96 4ggc_A P55CDC, cell division c 100.0 2.5E-28 8.4E-33 253.0 35.6 226 253-547 28-275 (318)
97 3mmy_A MRNA export factor; mRN 100.0 1.7E-28 6E-33 259.1 33.7 235 243-547 32-306 (368)
98 4aez_A CDC20, WD repeat-contai 100.0 1.2E-28 4E-33 265.7 32.0 228 248-547 89-338 (401)
99 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-29 5.1E-34 280.8 25.5 266 213-547 225-519 (524)
100 4h5i_A Guanine nucleotide-exch 100.0 2.1E-28 7E-33 260.4 31.2 231 215-518 96-343 (365)
101 3jro_A Fusion protein of prote 100.0 5.4E-29 1.8E-33 290.2 28.8 239 244-547 3-287 (753)
102 3jrp_A Fusion protein of prote 100.0 2.5E-28 8.5E-33 259.2 31.0 249 201-518 9-287 (379)
103 3f3f_A Nucleoporin SEH1; struc 100.0 2.6E-28 8.9E-33 255.0 29.0 261 201-518 9-337 (351)
104 1yfq_A Cell cycle arrest prote 100.0 2E-28 6.7E-33 256.7 24.3 233 246-547 7-284 (342)
105 3lrv_A PRE-mRNA-splicing facto 100.0 2.5E-28 8.5E-33 257.2 24.6 265 208-545 43-333 (343)
106 3mmy_A MRNA export factor; mRN 100.0 1.8E-27 6.1E-32 251.3 30.6 275 201-547 37-348 (368)
107 2xyi_A Probable histone-bindin 100.0 2.6E-27 8.8E-32 257.7 30.8 264 199-545 124-410 (430)
108 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-28 8.7E-33 265.1 21.2 277 205-576 19-343 (588)
109 2j04_A TAU60, YPL007P, hypothe 100.0 7.5E-28 2.6E-32 261.4 23.8 245 249-544 14-296 (588)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.8E-27 3E-31 255.0 31.9 235 247-546 99-392 (450)
111 4gq1_A NUP37; propeller, trans 100.0 1.1E-27 3.9E-32 257.3 23.7 224 249-547 88-350 (393)
112 1p22_A F-BOX/WD-repeat protein 100.0 6.3E-27 2.2E-31 254.9 29.7 268 247-629 130-416 (435)
113 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-26 5E-31 249.2 30.0 229 252-547 36-301 (402)
114 3bws_A Protein LP49; two-domai 100.0 2.6E-26 8.9E-31 249.2 31.8 265 206-545 127-432 (433)
115 1l0q_A Surface layer protein; 100.0 4.2E-26 1.4E-30 244.1 32.9 251 215-547 4-277 (391)
116 3vu4_A KMHSV2; beta-propeller 100.0 7.9E-27 2.7E-31 247.1 26.4 266 244-547 13-338 (355)
117 2xyi_A Probable histone-bindin 100.0 3.4E-26 1.2E-30 248.8 31.1 216 244-546 122-354 (430)
118 4gq1_A NUP37; propeller, trans 100.0 2.9E-27 9.8E-32 254.2 22.0 236 207-543 95-387 (393)
119 3jro_A Fusion protein of prote 100.0 7.9E-27 2.7E-31 271.9 26.8 250 201-519 7-286 (753)
120 3lrv_A PRE-mRNA-splicing facto 99.9 1.3E-26 4.6E-31 244.0 23.2 218 256-547 42-294 (343)
121 3bws_A Protein LP49; two-domai 99.9 1.2E-25 4.1E-30 244.0 28.5 259 218-547 94-392 (433)
122 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.8E-25 6.2E-30 244.5 29.5 275 250-543 4-337 (450)
123 2w18_A PALB2, fancn, partner a 99.9 3.3E-25 1.1E-29 226.6 27.0 243 216-543 56-355 (356)
124 2w18_A PALB2, fancn, partner a 99.9 2.9E-23 9.9E-28 212.3 30.8 246 253-547 42-316 (356)
125 3vu4_A KMHSV2; beta-propeller 99.9 3.5E-23 1.2E-27 219.0 32.6 273 206-517 24-335 (355)
126 1l0q_A Surface layer protein; 99.9 6.9E-23 2.4E-27 219.0 34.7 231 206-518 36-275 (391)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.6E-23 2.2E-27 221.7 27.4 260 209-547 70-389 (415)
128 1nir_A Nitrite reductase; hemo 99.9 9.4E-22 3.2E-26 219.7 30.9 267 206-548 142-461 (543)
129 1ri6_A Putative isomerase YBHE 99.9 6.9E-21 2.4E-25 198.9 29.9 261 217-545 9-308 (343)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-20 5.1E-25 203.2 29.5 222 213-517 143-386 (415)
131 1k32_A Tricorn protease; prote 99.9 2.4E-20 8.1E-25 225.3 29.9 312 210-547 21-411 (1045)
132 3u4y_A Uncharacterized protein 99.9 2.3E-19 7.9E-24 186.9 33.0 260 211-547 7-306 (331)
133 1k32_A Tricorn protease; prote 99.9 1.3E-19 4.6E-24 218.7 35.1 306 206-547 57-463 (1045)
134 1nir_A Nitrite reductase; hemo 99.9 9.4E-20 3.2E-24 203.5 27.5 275 205-548 182-517 (543)
135 2ecf_A Dipeptidyl peptidase IV 99.9 6.4E-20 2.2E-24 213.4 27.2 264 206-545 41-413 (741)
136 2ojh_A Uncharacterized protein 99.9 1.1E-19 3.6E-24 185.0 25.1 236 219-536 18-293 (297)
137 1pby_B Quinohemoprotein amine 99.8 6.8E-20 2.3E-24 190.8 23.9 257 214-547 2-312 (337)
138 2ecf_A Dipeptidyl peptidase IV 99.8 8.2E-20 2.8E-24 212.4 24.2 247 250-545 36-367 (741)
139 3hfq_A Uncharacterized protein 99.8 1.2E-18 4.2E-23 183.0 30.6 257 221-544 14-316 (347)
140 2oit_A Nucleoporin 214KDA; NH2 99.8 3.8E-19 1.3E-23 193.1 24.9 211 204-468 39-279 (434)
141 3vgz_A Uncharacterized protein 99.8 3.4E-18 1.2E-22 179.4 31.3 230 249-547 39-305 (353)
142 1xfd_A DIP, dipeptidyl aminope 99.8 3.5E-19 1.2E-23 206.4 25.8 263 206-546 21-394 (723)
143 3vgz_A Uncharacterized protein 99.8 1.2E-17 4.1E-22 175.1 30.3 258 206-536 45-335 (353)
144 2z3z_A Dipeptidyl aminopeptida 99.8 2.2E-18 7.5E-23 199.3 25.9 272 207-547 87-437 (706)
145 3scy_A Hypothetical bacterial 99.8 5.7E-17 1.9E-21 171.3 33.6 254 220-545 24-337 (361)
146 3u4y_A Uncharacterized protein 99.8 1E-17 3.5E-22 174.4 27.1 222 257-547 4-254 (331)
147 3o4h_A Acylamino-acid-releasin 99.8 2.1E-18 7.2E-23 194.8 23.2 254 206-545 26-315 (582)
148 2oit_A Nucleoporin 214KDA; NH2 99.8 9.3E-19 3.2E-23 190.1 19.1 196 250-496 36-250 (434)
149 2z3z_A Dipeptidyl aminopeptida 99.8 3.5E-18 1.2E-22 197.6 23.8 262 213-547 35-393 (706)
150 1ri6_A Putative isomerase YBHE 99.8 1.2E-17 4.1E-22 174.1 25.3 188 353-545 36-262 (343)
151 2ojh_A Uncharacterized protein 99.8 1.8E-17 6.2E-22 168.3 23.2 226 206-509 46-293 (297)
152 1pby_B Quinohemoprotein amine 99.8 5.3E-18 1.8E-22 176.4 19.5 177 356-547 35-271 (337)
153 1xfd_A DIP, dipeptidyl aminope 99.8 5.7E-18 2E-22 196.2 20.3 224 252-543 18-342 (723)
154 3o4h_A Acylamino-acid-releasin 99.8 3.9E-17 1.3E-21 184.5 25.3 219 249-543 20-274 (582)
155 1jmx_B Amine dehydrogenase; ox 99.8 3.5E-17 1.2E-21 171.2 22.7 264 208-547 6-327 (349)
156 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.5E-16 8.4E-21 166.9 27.1 257 223-546 14-342 (365)
157 3hfq_A Uncharacterized protein 99.7 8.9E-16 3E-20 161.0 29.1 248 205-516 43-315 (347)
158 1jmx_B Amine dehydrogenase; ox 99.7 2.3E-16 7.7E-21 165.0 21.6 224 255-547 4-286 (349)
159 1z68_A Fibroblast activation p 99.7 1.5E-16 5.1E-21 184.3 18.4 261 206-545 20-391 (719)
160 3scy_A Hypothetical bacterial 99.7 9.9E-15 3.4E-19 154.0 28.7 250 205-516 53-335 (361)
161 3pe7_A Oligogalacturonate lyas 99.7 2.2E-15 7.7E-20 160.3 23.8 266 207-545 41-382 (388)
162 1z68_A Fibroblast activation p 99.7 2.3E-16 7.9E-21 182.7 16.0 227 255-547 20-348 (719)
163 3pe7_A Oligogalacturonate lyas 99.7 6.2E-15 2.1E-19 156.9 23.4 230 246-547 26-331 (388)
164 4a5s_A Dipeptidyl peptidase 4 99.7 2.8E-15 9.7E-20 174.1 22.3 234 252-547 18-355 (740)
165 1q7f_A NHL, brain tumor CG1071 99.6 2.2E-13 7.6E-18 138.5 31.4 230 248-546 27-281 (286)
166 2oiz_A Aromatic amine dehydrog 99.6 2.6E-14 8.8E-19 151.1 25.0 258 221-546 29-335 (361)
167 4a5s_A Dipeptidyl peptidase 4 99.6 1.9E-14 6.6E-19 167.1 24.9 238 206-517 21-352 (740)
168 1jof_A Carboxy-CIS,CIS-muconat 99.6 3.3E-14 1.1E-18 150.5 22.9 240 206-517 44-340 (365)
169 3c5m_A Oligogalacturonate lyas 99.6 6.3E-14 2.1E-18 149.2 21.7 279 207-547 41-386 (396)
170 3azo_A Aminopeptidase; POP fam 99.6 1.8E-13 6E-18 156.8 25.8 190 353-547 128-371 (662)
171 2dg1_A DRP35, lactonase; beta 99.6 2.1E-12 7.3E-17 134.2 30.9 253 208-535 12-300 (333)
172 3azo_A Aminopeptidase; POP fam 99.6 1.6E-13 5.6E-18 157.1 23.0 231 244-544 17-322 (662)
173 1q7f_A NHL, brain tumor CG1071 99.6 2.5E-12 8.6E-17 130.7 28.9 236 207-518 35-280 (286)
174 3fvz_A Peptidyl-glycine alpha- 99.5 1.3E-12 4.3E-17 136.2 26.4 229 223-545 69-322 (329)
175 2bkl_A Prolyl endopeptidase; m 99.5 4E-13 1.4E-17 154.9 23.6 268 209-547 75-399 (695)
176 3c5m_A Oligogalacturonate lyas 99.5 1.7E-13 5.8E-18 145.8 16.3 180 359-547 85-331 (396)
177 2gop_A Trilobed protease; beta 99.5 4.5E-12 1.5E-16 132.4 25.6 235 212-544 23-330 (347)
178 2xdw_A Prolyl endopeptidase; a 99.5 5.1E-12 1.7E-16 146.0 27.5 230 248-547 122-416 (710)
179 3dsm_A Uncharacterized protein 99.5 1.6E-11 5.6E-16 127.7 28.4 251 219-547 13-303 (328)
180 3e5z_A Putative gluconolactona 99.5 1.5E-11 5.2E-16 125.6 27.0 226 245-546 22-287 (296)
181 3fvz_A Peptidyl-glycine alpha- 99.5 5.1E-12 1.8E-16 131.5 23.8 167 352-547 88-279 (329)
182 2oiz_A Aromatic amine dehydrog 99.5 5.8E-12 2E-16 133.0 24.4 231 359-604 54-359 (361)
183 2dg1_A DRP35, lactonase; beta 99.4 9.3E-12 3.2E-16 129.4 21.0 185 349-544 39-262 (333)
184 3e5z_A Putative gluconolactona 99.4 3.9E-11 1.3E-15 122.6 24.7 226 205-512 31-281 (296)
185 3dsm_A Uncharacterized protein 99.4 4.9E-11 1.7E-15 124.1 25.6 232 211-517 51-301 (328)
186 1qks_A Cytochrome CD1 nitrite 99.4 4.2E-10 1.4E-14 125.3 33.2 259 213-546 167-478 (567)
187 2gop_A Trilobed protease; beta 99.4 4.3E-11 1.5E-15 125.0 23.5 139 356-515 172-328 (347)
188 3no2_A Uncharacterized protein 99.4 6.6E-11 2.3E-15 119.8 23.8 216 213-505 5-230 (276)
189 1rwi_B Serine/threonine-protei 99.4 5.2E-11 1.8E-15 119.5 23.0 234 207-547 29-266 (270)
190 2mad_H Methylamine dehydrogena 99.3 1.8E-09 6.1E-14 114.2 33.6 254 224-547 48-352 (373)
191 1yr2_A Prolyl oligopeptidase; 99.3 8.5E-11 2.9E-15 136.4 24.3 265 208-547 113-443 (741)
192 2xdw_A Prolyl endopeptidase; a 99.3 2.3E-10 7.8E-15 132.1 26.4 235 207-518 130-414 (710)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 7.6E-10 2.6E-14 113.5 27.6 233 249-546 16-300 (314)
194 2z2n_A Virginiamycin B lyase; 99.3 4E-09 1.4E-13 106.9 32.1 255 209-546 22-296 (299)
195 1xip_A Nucleoporin NUP159; bet 99.3 4.1E-11 1.4E-15 126.1 16.4 187 252-504 39-230 (388)
196 3sjl_D Methylamine dehydrogena 99.3 1.6E-09 5.5E-14 113.5 28.1 269 210-547 41-365 (386)
197 2z2n_A Virginiamycin B lyase; 99.3 3.9E-09 1.3E-13 107.0 30.5 221 248-543 12-253 (299)
198 2bkl_A Prolyl endopeptidase; m 99.2 1.6E-10 5.6E-15 133.0 20.2 236 207-518 126-397 (695)
199 3no2_A Uncharacterized protein 99.2 3.5E-10 1.2E-14 114.5 20.1 182 261-547 4-197 (276)
200 1xip_A Nucleoporin NUP159; bet 99.2 3.3E-10 1.1E-14 119.2 18.7 175 205-453 41-230 (388)
201 1qks_A Cytochrome CD1 nitrite 99.2 1.5E-09 5.1E-14 120.9 24.1 183 364-547 165-375 (567)
202 2qc5_A Streptogramin B lactona 99.2 3E-08 1E-12 100.5 31.4 228 208-516 26-258 (300)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 8.4E-09 2.9E-13 105.6 26.3 238 206-517 22-298 (314)
204 3hrp_A Uncharacterized protein 99.2 4.2E-09 1.4E-13 112.9 24.8 196 251-516 131-352 (409)
205 3c75_H MADH, methylamine dehyd 99.2 4E-09 1.4E-13 112.4 24.1 257 223-547 99-404 (426)
206 1rwi_B Serine/threonine-protei 99.1 5.3E-09 1.8E-13 104.6 23.2 196 252-546 25-223 (270)
207 3dr2_A Exported gluconolactona 99.1 1E-08 3.5E-13 105.1 25.0 218 246-538 40-300 (305)
208 2qc5_A Streptogramin B lactona 99.1 7.7E-08 2.6E-12 97.4 30.3 220 249-543 18-258 (300)
209 3hrp_A Uncharacterized protein 99.1 1.4E-08 4.8E-13 108.8 25.9 238 207-514 136-406 (409)
210 3sjl_D Methylamine dehydrogena 99.0 4E-08 1.4E-12 102.9 25.2 181 359-547 82-322 (386)
211 1yr2_A Prolyl oligopeptidase; 99.0 1.2E-08 4E-13 118.4 22.5 234 207-518 168-441 (741)
212 2mad_H Methylamine dehydrogena 99.0 2.7E-07 9.1E-12 97.4 30.7 148 359-516 70-241 (373)
213 2ece_A 462AA long hypothetical 99.0 2.1E-07 7.1E-12 98.2 28.9 174 358-533 141-399 (462)
214 2ghs_A AGR_C_1268P; regucalcin 99.0 1.6E-07 5.4E-12 97.2 28.0 155 355-517 90-259 (326)
215 3g4e_A Regucalcin; six bladed 99.0 1.2E-07 4.2E-12 96.6 25.6 223 205-506 16-260 (297)
216 2qe8_A Uncharacterized protein 99.0 4.9E-08 1.7E-12 101.9 22.9 172 352-546 64-279 (343)
217 3iuj_A Prolyl endopeptidase; h 99.0 4.2E-08 1.4E-12 112.7 23.1 243 248-517 126-404 (693)
218 3g4e_A Regucalcin; six bladed 98.9 2.4E-07 8.3E-12 94.4 26.1 181 353-547 11-231 (297)
219 2ghs_A AGR_C_1268P; regucalcin 98.9 5.3E-07 1.8E-11 93.3 26.8 211 205-496 52-281 (326)
220 2qe8_A Uncharacterized protein 98.9 1.1E-07 3.9E-12 99.1 20.9 226 205-496 20-300 (343)
221 3dr2_A Exported gluconolactona 98.9 1.6E-07 5.3E-12 96.2 21.5 225 205-513 48-302 (305)
222 3c75_H MADH, methylamine dehyd 98.9 2.2E-07 7.4E-12 99.1 22.8 180 359-547 122-361 (426)
223 3q7m_A Lipoprotein YFGL, BAMB; 98.9 7.4E-07 2.5E-11 93.9 26.7 256 212-547 52-339 (376)
224 1mda_H Methylamine dehydrogena 98.8 6.7E-08 2.3E-12 101.3 15.4 248 224-547 47-348 (368)
225 2hz6_A Endoplasmic reticulum t 98.8 8.8E-10 3E-14 116.5 0.6 144 261-473 8-155 (369)
226 2ece_A 462AA long hypothetical 98.7 1.2E-06 4.2E-11 92.4 22.3 234 211-506 93-399 (462)
227 2iwa_A Glutamine cyclotransfer 98.7 2.3E-06 8E-11 84.8 23.2 202 252-546 22-238 (266)
228 3q7m_A Lipoprotein YFGL, BAMB; 98.7 1E-05 3.5E-10 85.0 28.8 253 210-542 100-375 (376)
229 2hz6_A Endoplasmic reticulum t 98.7 2.8E-09 9.7E-14 112.6 1.0 250 212-545 8-279 (369)
230 1yiq_A Quinohemoprotein alcoho 98.7 1.7E-06 5.9E-11 98.8 23.5 173 373-547 181-507 (689)
231 1kb0_A Quinohemoprotein alcoho 98.7 1.3E-06 4.4E-11 99.6 22.2 172 374-547 189-509 (677)
232 3iuj_A Prolyl endopeptidase; h 98.6 1.8E-06 6.3E-11 98.9 23.0 237 207-471 134-409 (693)
233 3nol_A Glutamine cyclotransfer 98.5 1.6E-05 5.5E-10 77.9 21.6 187 253-506 45-243 (262)
234 3nok_A Glutaminyl cyclase; bet 98.5 1.2E-05 4.2E-10 78.7 20.7 185 253-505 57-252 (268)
235 1fwx_A Nitrous oxide reductase 98.5 5.7E-06 1.9E-10 90.4 19.6 169 374-547 174-433 (595)
236 1kb0_A Quinohemoprotein alcoho 98.5 8.3E-06 2.8E-10 93.0 21.6 266 210-519 125-508 (677)
237 1npe_A Nidogen, entactin; glyc 98.4 0.00011 3.6E-09 73.2 25.5 184 356-547 37-240 (267)
238 3mbr_X Glutamine cyclotransfer 98.4 9.8E-05 3.4E-09 71.7 23.9 179 252-496 22-213 (243)
239 2iwa_A Glutamine cyclotransfer 98.4 3.8E-05 1.3E-09 76.1 21.0 155 356-518 22-181 (266)
240 2fp8_A Strictosidine synthase; 98.4 4.2E-05 1.5E-09 78.5 22.4 180 356-545 81-313 (322)
241 1mda_H Methylamine dehydrogena 98.4 1.3E-05 4.4E-10 83.8 18.4 237 206-472 69-351 (368)
242 3hxj_A Pyrrolo-quinoline quino 98.3 4.1E-05 1.4E-09 78.4 20.4 173 356-547 138-326 (330)
243 1yiq_A Quinohemoprotein alcoho 98.3 6.8E-05 2.3E-09 85.6 23.6 106 367-473 321-511 (689)
244 1fwx_A Nitrous oxide reductase 98.3 3.1E-05 1.1E-09 84.6 19.5 171 365-545 100-361 (595)
245 2fp8_A Strictosidine synthase; 98.3 0.00029 9.9E-09 72.2 26.0 153 356-517 127-312 (322)
246 1npe_A Nidogen, entactin; glyc 98.3 0.00088 3E-08 66.4 28.8 151 355-517 79-237 (267)
247 1kv9_A Type II quinohemoprotei 98.3 8.5E-05 2.9E-09 84.5 23.6 98 374-472 177-338 (668)
248 3nol_A Glutamine cyclotransfer 98.2 0.0001 3.4E-09 72.2 20.3 153 356-516 44-199 (262)
249 3nok_A Glutaminyl cyclase; bet 98.1 0.0002 6.8E-09 70.1 19.7 155 355-517 55-209 (268)
250 3hxj_A Pyrrolo-quinoline quino 98.1 6.1E-05 2.1E-09 77.1 16.7 145 355-517 177-323 (330)
251 3qqz_A Putative uncharacterize 98.1 0.00069 2.4E-08 66.6 22.7 193 348-543 20-251 (255)
252 2ad6_A Methanol dehydrogenase 98.1 0.0012 4.1E-08 73.4 27.3 107 365-473 160-341 (571)
253 3mbr_X Glutamine cyclotransfer 98.1 0.00085 2.9E-08 65.0 22.6 156 355-517 21-178 (243)
254 4a2l_A BT_4663, two-component 98.0 0.0084 2.9E-07 69.6 35.3 183 354-546 356-572 (795)
255 1w6s_A Methanol dehydrogenase 98.0 0.0013 4.6E-08 73.2 26.7 99 373-473 180-348 (599)
256 2p4o_A Hypothetical protein; p 98.0 0.0032 1.1E-07 63.8 27.6 151 356-517 73-241 (306)
257 4a2l_A BT_4663, two-component 98.0 0.007 2.4E-07 70.2 32.9 183 354-547 309-528 (795)
258 1k3i_A Galactose oxidase precu 97.9 0.00032 1.1E-08 79.7 20.4 254 208-534 192-530 (656)
259 2p4o_A Hypothetical protein; p 97.9 0.0023 8E-08 64.8 24.7 186 355-544 32-241 (306)
260 1k3i_A Galactose oxidase precu 97.9 0.00016 5.4E-09 82.2 16.8 190 355-547 243-499 (656)
261 3tc9_A Hypothetical hydrolase; 97.9 0.0012 4.3E-08 70.5 22.9 112 355-467 179-301 (430)
262 1kv9_A Type II quinohemoprotei 97.9 0.0035 1.2E-07 71.1 27.5 152 357-519 232-489 (668)
263 4hw6_A Hypothetical protein, I 97.8 0.0018 6.1E-08 69.4 22.7 161 355-516 182-372 (433)
264 3qqz_A Putative uncharacterize 97.8 0.0079 2.7E-07 59.0 25.3 204 244-515 20-250 (255)
265 3v64_C Agrin; beta propeller, 97.7 0.015 5.2E-07 60.1 26.9 155 355-517 73-233 (349)
266 3tc9_A Hypothetical hydrolase; 97.7 0.017 5.8E-07 61.6 27.8 157 357-515 228-427 (430)
267 1ijq_A LDL receptor, low-densi 97.7 0.021 7.3E-07 58.0 27.3 155 355-517 30-194 (316)
268 2ad6_A Methanol dehydrogenase 97.7 0.0046 1.6E-07 68.7 23.8 57 376-433 273-342 (571)
269 1flg_A Protein (quinoprotein e 97.7 0.006 2E-07 67.9 24.6 73 399-473 250-361 (582)
270 3v65_B Low-density lipoprotein 97.7 0.0074 2.5E-07 63.4 24.0 155 355-517 116-276 (386)
271 2xe4_A Oligopeptidase B; hydro 97.6 0.0014 4.7E-08 75.7 19.0 108 358-467 224-354 (751)
272 3v65_B Low-density lipoprotein 97.6 0.022 7.6E-07 59.8 26.2 112 357-468 161-278 (386)
273 3v64_C Agrin; beta propeller, 97.6 0.044 1.5E-06 56.5 28.1 113 356-468 117-235 (349)
274 3amr_A 3-phytase; beta-propell 97.6 0.019 6.4E-07 58.6 24.2 111 355-466 128-262 (355)
275 3p5b_L Low density lipoprotein 97.6 0.11 3.8E-06 54.7 31.4 115 355-469 159-279 (400)
276 1ijq_A LDL receptor, low-densi 97.6 0.091 3.1E-06 53.3 31.6 113 356-468 78-196 (316)
277 3v9f_A Two-component system se 97.5 0.17 5.7E-06 58.4 35.3 181 353-546 405-612 (781)
278 3v9f_A Two-component system se 97.5 0.11 3.7E-06 60.0 33.5 184 354-547 362-570 (781)
279 3kya_A Putative phosphatase; s 97.5 0.021 7.3E-07 61.4 24.4 111 356-466 187-340 (496)
280 2p9w_A MAL S 1 allergenic prot 97.3 0.043 1.5E-06 55.4 22.9 110 357-467 65-215 (334)
281 3sov_A LRP-6, low-density lipo 97.3 0.037 1.3E-06 56.3 22.8 183 356-547 36-240 (318)
282 4hw6_A Hypothetical protein, I 97.3 0.13 4.3E-06 54.8 27.5 153 356-516 140-302 (433)
283 2xe4_A Oligopeptidase B; hydro 97.2 0.036 1.2E-06 63.7 24.5 241 208-470 180-461 (751)
284 3sov_A LRP-6, low-density lipo 97.2 0.13 4.4E-06 52.3 25.4 151 356-517 80-237 (318)
285 2p9w_A MAL S 1 allergenic prot 97.2 0.052 1.8E-06 54.8 21.3 163 350-544 8-214 (334)
286 3ei3_A DNA damage-binding prot 97.1 0.38 1.3E-05 57.7 32.6 81 203-290 513-600 (1158)
287 1flg_A Protein (quinoprotein e 97.1 0.012 4.1E-07 65.4 18.5 59 416-474 465-523 (582)
288 3m0c_C LDL receptor, low-densi 97.1 0.41 1.4E-05 54.9 31.0 115 355-469 471-591 (791)
289 2xbg_A YCF48-like protein; pho 97.1 0.24 8.3E-06 50.3 26.3 111 353-468 161-279 (327)
290 3amr_A 3-phytase; beta-propell 96.9 0.11 3.9E-06 52.9 21.3 92 374-466 98-209 (355)
291 1w6s_A Methanol dehydrogenase 96.9 0.029 9.8E-07 62.4 18.4 102 368-472 124-292 (599)
292 3p5b_L Low density lipoprotein 96.9 0.1 3.5E-06 54.9 22.0 158 352-517 109-276 (400)
293 3m0c_C LDL receptor, low-densi 96.8 0.21 7.3E-06 57.3 25.4 160 350-517 419-588 (791)
294 3kya_A Putative phosphatase; s 96.7 0.63 2.2E-05 50.0 26.2 107 358-465 250-408 (496)
295 4a0p_A LRP6, LRP-6, low-densit 96.6 1.3 4.5E-05 49.4 29.4 151 356-517 81-236 (628)
296 1n7d_A LDL receptor, low-densi 96.6 0.0053 1.8E-07 70.0 9.8 155 355-517 406-570 (699)
297 4a0p_A LRP6, LRP-6, low-densit 96.6 0.87 3E-05 50.8 27.7 183 355-547 37-239 (628)
298 1n7d_A LDL receptor, low-densi 96.3 0.031 1.1E-06 63.6 13.6 111 358-468 456-572 (699)
299 3sre_A PON1, serum paraoxonase 96.2 0.8 2.7E-05 47.0 22.7 108 357-467 114-252 (355)
300 2xbg_A YCF48-like protein; pho 96.1 1.3 4.6E-05 44.7 31.8 177 355-543 122-320 (327)
301 2ism_A Putative oxidoreductase 96.1 1.1 3.8E-05 45.9 23.8 70 206-280 35-113 (352)
302 3s94_A LRP-6, low-density lipo 96.1 1.5 5E-05 48.9 25.8 152 355-516 84-241 (619)
303 3s94_A LRP-6, low-density lipo 96.0 0.95 3.2E-05 50.4 23.6 184 355-547 40-245 (619)
304 3sre_A PON1, serum paraoxonase 95.8 2.1 7.1E-05 43.9 24.2 110 356-466 166-297 (355)
305 1tl2_A L10, protein (tachylect 95.7 0.13 4.4E-06 48.6 12.8 136 367-515 6-160 (236)
306 2g8s_A Glucose/sorbosone dehyd 95.7 1.2 4.2E-05 45.6 21.8 29 251-279 18-46 (353)
307 3ei3_A DNA damage-binding prot 95.4 6.5 0.00022 47.0 35.6 110 355-466 514-635 (1158)
308 3pbp_A Nucleoporin NUP82; beta 95.4 0.36 1.2E-05 50.3 15.7 146 363-515 29-209 (452)
309 2vpj_A Kelch-like protein 12; 95.4 0.64 2.2E-05 46.2 17.8 167 367-546 65-279 (301)
310 2xn4_A Kelch-like protein 2; s 95.3 1 3.6E-05 44.7 19.0 167 367-546 64-277 (302)
311 3a9g_A Putative uncharacterize 95.2 3.3 0.00011 42.4 25.6 65 436-505 258-329 (354)
312 2xzh_A Clathrin heavy chain 1; 95.0 3.4 0.00012 41.5 23.0 76 394-470 259-335 (365)
313 3pbp_A Nucleoporin NUP82; beta 95.0 0.79 2.7E-05 47.7 16.9 156 406-589 31-207 (452)
314 3sbq_A Nitrous-oxide reductase 94.9 3.5 0.00012 44.4 21.8 96 419-518 300-408 (638)
315 3ii7_A Kelch-like protein 7; p 94.8 1.3 4.4E-05 44.0 18.2 102 367-472 104-230 (306)
316 4asc_A Kelch repeat and BTB do 94.6 1.9 6.5E-05 43.1 18.8 158 377-546 69-278 (315)
317 2be1_A Serine/threonine-protei 94.5 0.46 1.6E-05 48.3 13.9 92 372-464 64-181 (339)
318 2xzh_A Clathrin heavy chain 1; 94.4 4.6 0.00016 40.5 29.0 198 258-524 74-296 (365)
319 2xn4_A Kelch-like protein 2; s 94.4 2.1 7.3E-05 42.3 18.7 138 367-517 111-275 (302)
320 1bpo_A Protein (clathrin); cla 94.1 6.5 0.00022 41.1 24.8 201 205-471 107-335 (494)
321 1zgk_A Kelch-like ECH-associat 93.8 3.3 0.00011 41.1 18.7 158 375-546 90-288 (308)
322 1cru_A Protein (soluble quinop 93.8 2.2 7.4E-05 45.4 18.0 33 250-282 26-58 (454)
323 2vpj_A Kelch-like protein 12; 93.7 4.2 0.00014 40.0 19.2 103 367-473 162-284 (301)
324 3a9g_A Putative uncharacterize 93.6 2.2 7.7E-05 43.6 17.2 99 354-454 28-152 (354)
325 2ism_A Putative oxidoreductase 93.4 2.5 8.4E-05 43.3 17.2 105 395-505 31-152 (352)
326 2woz_A Kelch repeat and BTB do 93.3 3.9 0.00013 40.8 18.3 130 377-518 80-231 (318)
327 1tl2_A L10, protein (tachylect 93.1 0.1 3.5E-06 49.3 5.4 100 356-461 42-157 (236)
328 3das_A Putative oxidoreductase 92.8 4.3 0.00015 41.3 17.6 35 249-283 30-64 (347)
329 1bpo_A Protein (clathrin); cla 92.8 11 0.00037 39.5 28.8 166 356-524 107-295 (494)
330 2g8s_A Glucose/sorbosone dehyd 92.5 10 0.00035 38.6 25.5 61 437-503 271-338 (353)
331 3ii7_A Kelch-like protein 7; p 92.4 6 0.00021 39.0 18.2 95 375-473 169-278 (306)
332 4asc_A Kelch repeat and BTB do 92.2 8.8 0.0003 38.0 19.1 94 375-472 117-226 (315)
333 1zgk_A Kelch-like ECH-associat 89.3 10 0.00035 37.4 16.3 102 367-472 171-292 (308)
334 2woz_A Kelch repeat and BTB do 89.2 18 0.00062 35.7 19.7 102 367-472 112-236 (318)
335 3das_A Putative oxidoreductase 89.0 4.5 0.00015 41.1 13.3 112 393-506 30-158 (347)
336 3ott_A Two-component system se 88.4 37 0.0013 38.3 30.1 146 356-518 104-260 (758)
337 1cru_A Protein (soluble quinop 88.2 4.4 0.00015 43.0 13.2 60 395-455 27-98 (454)
338 2zwa_A Leucine carboxyl methyl 87.8 25 0.00085 39.5 19.8 104 365-469 451-579 (695)
339 2uvk_A YJHT; unknown function, 87.7 13 0.00043 37.6 16.1 94 375-471 86-232 (357)
340 1xi4_A Clathrin heavy chain; a 87.1 33 0.0011 41.5 20.2 166 356-524 107-295 (1630)
341 1xi4_A Clathrin heavy chain; a 86.4 17 0.00058 43.9 17.3 76 394-470 258-334 (1630)
342 3uc1_A DNA gyrase subunit A; D 85.6 31 0.0011 34.5 21.0 111 356-467 147-279 (327)
343 2rr3_B OSBP, oxysterol-binding 85.6 0.51 1.8E-05 30.8 2.4 20 4-23 13-32 (47)
344 3s25_A Hypothetical 7-bladed b 85.4 30 0.001 34.2 16.9 99 361-467 151-255 (302)
345 2be1_A Serine/threonine-protei 85.3 0.92 3.1E-05 46.1 5.6 109 365-473 10-136 (339)
346 2zwa_A Leucine carboxyl methyl 85.0 24 0.00084 39.5 17.9 107 365-471 500-639 (695)
347 2uvk_A YJHT; unknown function, 84.9 21 0.00072 35.9 16.0 55 418-472 286-347 (357)
348 3s25_A Hypothetical 7-bladed b 84.1 35 0.0012 33.7 22.0 101 361-469 110-218 (302)
349 4gq2_M Nucleoporin NUP120; bet 75.5 28 0.00095 40.7 14.4 41 251-291 236-276 (950)
350 3b7f_A Glycosyl hydrolase, BNR 74.6 51 0.0017 33.6 14.9 147 365-513 22-203 (394)
351 3b7f_A Glycosyl hydrolase, BNR 74.2 79 0.0027 32.1 17.0 109 355-464 55-205 (394)
352 4gq2_M Nucleoporin NUP120; bet 72.8 1.5E+02 0.005 34.5 20.6 37 356-392 237-274 (950)
353 3sbq_A Nitrous-oxide reductase 71.8 11 0.00036 40.7 8.5 99 357-456 325-454 (638)
354 3uc1_A DNA gyrase subunit A; D 70.5 90 0.0031 31.1 18.8 100 367-467 111-228 (327)
355 3ott_A Two-component system se 70.2 1.4E+02 0.0049 33.3 31.5 150 355-517 419-585 (758)
356 1sqj_A OXG-RCBH, oligoxylogluc 58.4 1.2E+02 0.004 34.5 14.7 156 354-512 14-195 (789)
357 1suu_A DNA gyrase subunit A; t 58.2 1.5E+02 0.005 29.3 22.2 204 260-544 6-230 (312)
358 2wg3_C Hedgehog-interacting pr 57.4 96 0.0033 32.6 12.8 112 395-508 14-159 (463)
359 3q6k_A 43.2 kDa salivary prote 55.5 1.8E+02 0.0062 29.6 17.6 89 376-465 124-251 (381)
360 3qhy_B Beta-lactamase inhibito 53.1 1.6E+02 0.0056 28.3 17.8 103 356-467 103-207 (282)
361 3no0_A DNA gyrase subunit A; D 51.8 1.7E+02 0.0059 28.1 18.6 101 366-467 81-196 (276)
362 4fhn_B Nucleoporin NUP120; pro 49.4 37 0.0012 40.6 8.9 39 396-435 239-277 (1139)
363 1wp5_A Topoisomerase IV; broke 45.2 2.4E+02 0.0081 27.9 25.0 154 363-516 48-223 (323)
364 3f7f_A Nucleoporin NUP120; nuc 44.9 51 0.0018 36.7 8.3 38 251-290 222-259 (729)
365 1zi0_A DNA gyrase subunit A; b 44.6 2.3E+02 0.008 27.6 22.2 104 363-467 51-176 (307)
366 3q6k_A 43.2 kDa salivary prote 44.6 2.7E+02 0.0092 28.3 23.5 93 373-467 179-306 (381)
367 4fhn_B Nucleoporin NUP120; pro 40.8 1.6E+02 0.0054 35.0 12.6 37 356-392 239-276 (1139)
368 2wg3_C Hedgehog-interacting pr 40.8 3.4E+02 0.012 28.4 28.0 54 207-261 19-79 (463)
369 2cn3_A Xyloglucanase, beta-1,4 38.6 2.9E+02 0.0098 30.9 13.7 103 355-457 23-153 (737)
370 3f7f_A Nucleoporin NUP120; nuc 38.0 44 0.0015 37.2 6.4 37 396-435 223-259 (729)
371 3l6v_A GYRA, DNA gyrase subuni 37.0 3.4E+02 0.012 27.3 19.4 181 360-544 1-264 (370)
372 1sqj_A OXG-RCBH, oligoxylogluc 36.6 1.8E+02 0.006 33.0 11.6 115 394-510 14-144 (789)
373 4a9v_A PHOX; hydrolase, beta-p 32.3 1.4E+02 0.0047 32.3 9.0 60 395-455 476-549 (592)
374 2cn3_A Xyloglucanase, beta-1,4 31.6 2.8E+02 0.0096 30.9 12.1 112 395-507 23-152 (737)
375 3qhy_B Beta-lactamase inhibito 27.6 4.1E+02 0.014 25.4 16.9 104 356-468 142-247 (282)
376 3zwu_A Alkaline phosphatase PH 27.3 1.4E+02 0.0047 32.5 8.1 57 397-454 478-548 (592)
377 3no0_A DNA gyrase subunit A; D 27.1 4.2E+02 0.014 25.3 22.0 111 356-467 117-246 (276)
378 4a9v_A PHOX; hydrolase, beta-p 23.3 1.9E+02 0.0064 31.3 8.0 58 356-414 477-549 (592)
379 3a0f_A Xyloglucanase; beta-pro 21.4 6.5E+02 0.022 28.1 12.7 120 394-513 20-159 (763)
380 3kci_A Probable E3 ubiquitin-p 20.4 6.5E+02 0.022 25.1 26.7 184 357-546 107-346 (389)
381 1q47_A Semaphorin 3A; beta pro 20.1 4.6E+02 0.016 27.6 10.3 76 345-421 394-487 (495)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.8e-44 Score=411.27 Aligned_cols=424 Identities=17% Similarity=0.202 Sum_probs=310.4
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
...+|+++++.+++++ ++.|+||+..... ....+.+|...|++++|+|+|++||||+.|++|+|||+.+++.
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~l~~~~~~~-------~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLT-------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTCSS-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred eEEeeCCCCCEEEeCC-CCEEEEecCCCcc-------cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 3457888999999887 5799999876432 2356889999999999999999999999999999999975542
Q ss_pred --eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec-cCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 285 --LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR-TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 285 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
...+..+.. .+..+.+.+++...+..... .....+.+|+. ......+.+|...|.+++
T Consensus 94 ~~~~~~~~~~~-------------~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~------~~~~~~l~gh~~~v~~v~ 154 (611)
T 1nr0_A 94 ILKTTIPVFSG-------------PVKDISWDSESKRIAAVGEGRERFGHVFLFDT------GTSNGNLTGQARAMNSVD 154 (611)
T ss_dssp CEEEEEECSSS-------------CEEEEEECTTSCEEEEEECCSSCSEEEEETTT------CCBCBCCCCCSSCEEEEE
T ss_pred eeeEeecccCC-------------ceEEEEECCCCCEEEEEECCCCceeEEEEeeC------CCCcceecCCCCCceEEE
Confidence 233333333 34444455544433322111 11224444442 245667889999999999
Q ss_pred eeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-----
Q 005646 362 WSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----- 433 (686)
Q Consensus 362 ~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~----- 433 (686)
|+|++ .|++++.|++|++||..+++++..+. |...|++++|+| ++++|++|+.|++|++||+.+++.+...
T Consensus 155 f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 155 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp ECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 99998 69999999999999999999988887 999999999999 9999999999999999999998877554
Q ss_pred ---ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE---------------------------------
Q 005646 434 ---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC--------------------------------- 477 (686)
Q Consensus 434 ---~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~--------------------------------- 477 (686)
.|...|++++|+|+|++|++++.|++|++||+.++++.......
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 68899999999999999999999999999999987654322100
Q ss_pred --eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-------------------------------------
Q 005646 478 --VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN------------------------------------- 518 (686)
Q Consensus 478 --~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------------------------------- 518 (686)
......+|...|++++|+| ++.+|++++.|++|++||..+
T Consensus 314 ~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 314 GSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392 (611)
T ss_dssp TEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence 0112346888999999999 889999999999999998531
Q ss_pred ------------------------------------------------------------ceeEcCCCCEEEEEeCCCcE
Q 005646 519 ------------------------------------------------------------VIGKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 519 ------------------------------------------------------------~~~~~~dg~~l~sgs~Dg~V 538 (686)
.++++|||++|++|+.|++|
T Consensus 393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v 472 (611)
T 1nr0_A 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV 472 (611)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence 24577899999999999999
Q ss_pred EEEeCCCCCCCCccccccccccccccC-CcEEEecCCCC-----------cCCCCCC-CCcccc--cCCCC--CcccccC
Q 005646 539 YMWNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCGL-----------KCGNAEK-EPQLHV--SDDDS--PENLAFA 601 (686)
Q Consensus 539 ~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~-----------~~~~~~~-g~~l~~--~~~~~--~~~~~~s 601 (686)
+|||+.++.. ..+.. ..+.. ...++|+++|. .+|+..+ +..+.. ...|. ...++|+
T Consensus 473 ~lwd~~~~~~------~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs 545 (611)
T 1nr0_A 473 HVYKLSGASV------SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 545 (611)
T ss_dssp EEEEEETTEE------EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred EEEEccCCce------eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEEC
Confidence 9999976531 11111 12222 55666666654 4688776 444433 22244 3456899
Q ss_pred CCccccCccccccCCCCCCCCCCCCcCCCcc-ccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 602 PARFSLGQEYVFESFPKGCATWPEEKLPALS-QLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 602 pd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
|| +..+++++.|+++++|+.+...... .. ..++. . ....++ .++++|. |||||.||+||+|+.
T Consensus 546 pd----g~~lasgs~D~~v~lW~~~~~~~~~~~~--~~~h~---~----~~v~~v-~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 546 PD----NVRLATGSLDNSVIVWNMNKPSDHPIII--KGAHA---M----SSVNSV-IWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TT----SSEEEEEETTSCEEEEETTCTTSCCEEE--TTSST---T----SCEEEE-EEEETTE-EEEEETTSCEEEEEC
T ss_pred CC----CCEEEEEECCCcEEEEECCCcccccchh--hccCc---c----cCeeEE-EEcCCCE-EEEecCCCCEEEEec
Confidence 99 5677789999999999976533111 00 00000 0 011222 2345688 999999999999974
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-40 Score=375.55 Aligned_cols=431 Identities=24% Similarity=0.324 Sum_probs=307.4
Q ss_pred ecccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 200 VDKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 200 ~~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
..|...+ .+|+++++++++|+.|+.|+|||.... ..+++.+|.+.|++|+|+|||++||+++.|++|+||
T Consensus 13 ~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~--------~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC--------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC--------EEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 3466655 457788899999999999999985321 135688999999999999999999999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCC--------------------------------------------------
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSE-------------------------------------------------- 307 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 307 (686)
|+ +++.+..+..+...+.++.|.++....
T Consensus 85 d~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (577)
T 2ymu_A 85 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163 (577)
T ss_dssp ET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccce
Confidence 96 567777777666555555554332110
Q ss_pred -------------------ceeeeeccccceeE------------------EEeec-cCCceEEEeCC------------
Q 005646 308 -------------------LKPLFMDKEKISIL------------------KSLRR-TSESACVVFPP------------ 337 (686)
Q Consensus 308 -------------------~~~~~~~~~~~~~~------------------~~~~~-~~~~~~~~~~~------------ 337 (686)
+..+.+.+++...+ ..+.. ......+.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~ 243 (577)
T 2ymu_A 164 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 243 (577)
T ss_dssp EEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred eccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCC
Confidence 00000111100000 00000 00011111111
Q ss_pred --ccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEE
Q 005646 338 --KVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISG 413 (686)
Q Consensus 338 --~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sg 413 (686)
++|+...+.+..+.+|...|.+++|+|++ .|++++.|++|++||.. ++++..+. |...|++++|+| ++.+|+++
T Consensus 244 ~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~ 321 (577)
T 2ymu_A 244 TVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DGQTIASA 321 (577)
T ss_dssp CEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred EEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECC-CCCEEEEE
Confidence 12333445667778888888888888888 88888888999999864 45555555 999999999999 99999999
Q ss_pred EcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 414 s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
+.|++|++||+....+.....|...|++++|+|+|+++++|+.||.|++||.... +.. ....|...|++++
T Consensus 322 ~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~-~~~--------~~~~~~~~v~~~~ 392 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQ--------TLTGHSSSVRGVA 392 (577)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC-EEE--------EEECCSSCEEEEE
T ss_pred eCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC-EEE--------EecCCCCCeEEEE
Confidence 9999999999988888888889999999999999999999999999999997543 221 1234678899999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCC--------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGP--------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 559 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~--------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~ 559 (686)
|+| ++.+|++++.|+.|++||.. +.++++||+++|++++.|+.|++||+.... +..
T Consensus 393 ~s~-dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~---------~~~ 462 (577)
T 2ymu_A 393 FSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL---------LQT 462 (577)
T ss_dssp ECT-TSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE---------EEE
T ss_pred ECC-CCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE---------EEE
Confidence 999 88999999999999999853 237889999999999999999999975422 122
Q ss_pred cccccC-CcEEEecCCCC-----------cCCCCCCCCcccccCCCCCc--ccccCCCccccCccccccCCCCCCCCCCC
Q 005646 560 LERFTT-NASIAIPWCGL-----------KCGNAEKEPQLHVSDDDSPE--NLAFAPARFSLGQEYVFESFPKGCATWPE 625 (686)
Q Consensus 560 ~~~~~~-~~~v~~s~~g~-----------~~~~~~~g~~l~~~~~~~~~--~~~~spd~~~~~~~~~~~s~d~~~~~W~~ 625 (686)
+..+.. ...++++++|. ++|+ .++..+..+.+|... .++|+|| +..+++++.|+.+++|+.
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~d----g~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTT----SSCEEEEETTSEEEEECT
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCC----CCEEEEEECcCEEEEEeC
Confidence 222222 33445554432 5788 467888888777654 5679999 566778899999999994
Q ss_pred CcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEe
Q 005646 626 EKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 678 (686)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~ 678 (686)
.... ...+ ..|. ....++ .++++|..|||||.||+||+|.
T Consensus 538 ~~~~-~~~~-------~~h~----~~v~~~-~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 NGQL-LQTL-------TGHS----SSVWGV-AFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSCE-EEEE-------ECCS----SCEEEE-EECTTSSCEEEEETTSCEEEEC
T ss_pred CCCE-EEEE-------cCCC----CCEEEE-EEcCCCCEEEEEeCCCEEEEeC
Confidence 3211 1111 0110 011222 3456799999999999999995
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.6e-38 Score=357.11 Aligned_cols=382 Identities=15% Similarity=0.181 Sum_probs=280.7
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC----CcEEEEEeec
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD----GVVRLWQVVE 281 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I~vWd~~~ 281 (686)
..+|+++++++++|+.|+.|+|||........ ...+.+|.++|.+++|+|+|++||+++.+ +.|++|| .
T Consensus 64 ~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~-----~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~ 136 (611)
T 1nr0_A 64 VAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-----KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--T 136 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEESSSTTCCE-----EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--T
T ss_pred EEEECCCCcEEEEEeCCCCEEEeECCCCccee-----eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--C
Confidence 36778899999999999999999985432211 24577899999999999999999999875 3677777 4
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
+.....+..+...+.++.|.++. ...+ ...+.+..+.+|+... .+.+..+.+|...|.+++
T Consensus 137 ~~~~~~l~gh~~~v~~v~f~p~~-------------~~~l--~s~s~D~~v~lwd~~~----~~~~~~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 137 GTSNGNLTGQARAMNSVDFKPSR-------------PFRI--ISGSDDNTVAIFEGPP----FKFKSTFGEHTKFVHSVR 197 (611)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSS-------------SCEE--EEEETTSCEEEEETTT----BEEEEEECCCSSCEEEEE
T ss_pred CCCcceecCCCCCceEEEECCCC-------------CeEE--EEEeCCCeEEEEECCC----CeEeeeeccccCceEEEE
Confidence 55555565555555555554432 2111 1223344444554332 245678899999999999
Q ss_pred eeCCC-EEEEEECCCcEEEEECCCCeeeeEe--------eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGNDHCLRVF--------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD- 431 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~--------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~- 431 (686)
|+|++ +|++++.|++|+|||+.+++++..+ .|.+.|++++|+| ++++|++++.|++|++||+.+++++.
T Consensus 198 fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~ 276 (611)
T 1nr0_A 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKT 276 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeee
Confidence 99999 9999999999999999999988877 5999999999999 99999999999999999998876442
Q ss_pred -------------------------------------------EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 432 -------------------------------------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 432 -------------------------------------------~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
..+|...|++++|+|+|++|++++.||+|++||+.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 2357788999999999999999999999999999865
Q ss_pred eeeeee--------------------------eEEeec------------------------------------------
Q 005646 469 HLELDA--------------------------EICVHS------------------------------------------ 480 (686)
Q Consensus 469 ~~~~~~--------------------------~~~~~~------------------------------------------ 480 (686)
...... .+.+..
T Consensus 357 ~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~ 436 (611)
T 1nr0_A 357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 436 (611)
T ss_dssp CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred ceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEE
Confidence 432110 000000
Q ss_pred ------cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC----------------cceeEcCCCCEEEEEeCCCcE
Q 005646 481 ------KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----------------NVIGKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 481 ------~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----------------~~~~~~~dg~~l~sgs~Dg~V 538 (686)
....+...+.+++|+| ++++|++++.|+.|++||.. +.++|+|||++|++++.|++|
T Consensus 437 ~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v 515 (611)
T 1nr0_A 437 YSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV 515 (611)
T ss_dssp EETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCE
Confidence 0001335578999999 88999999999999999853 246899999999999999999
Q ss_pred EEEeCCCCCCCCccccccccccccccC-CcEEEecCCCC-----------cCCCCCCCCc-c-cccCCC-C--CcccccC
Q 005646 539 YMWNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCGL-----------KCGNAEKEPQ-L-HVSDDD-S--PENLAFA 601 (686)
Q Consensus 539 ~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~-----------~~~~~~~g~~-l-~~~~~~-~--~~~~~~s 601 (686)
++|++.++...... ..+..+.. ...++|+++|. ++|+..++.. + ..+.+| . ...++|+
T Consensus 516 ~~w~~~~~~~~~~~-----~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs 590 (611)
T 1nr0_A 516 IPYSVANNFELAHT-----NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590 (611)
T ss_dssp EEEEGGGTTEESCC-----CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE
T ss_pred EEEEcCCCCceeee-----eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEc
Confidence 99999873211110 00111112 34455555443 6899887753 3 455555 3 3456789
Q ss_pred CCccccCccccccCCCCCCCCCCC
Q 005646 602 PARFSLGQEYVFESFPKGCATWPE 625 (686)
Q Consensus 602 pd~~~~~~~~~~~s~d~~~~~W~~ 625 (686)
||+ . +++++.|+++++|+.
T Consensus 591 ~d~----~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 591 NET----T-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp ETT----E-EEEEETTSCEEEEEC
T ss_pred CCC----E-EEEecCCCCEEEEec
Confidence 984 4 778899999999984
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.9e-38 Score=339.12 Aligned_cols=268 Identities=22% Similarity=0.387 Sum_probs=233.9
Q ss_pred eeeecccCccee--eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcE
Q 005646 197 ACVVDKQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (686)
Q Consensus 197 ~~~~~~~~~~~~--~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (686)
.....|...+.+ |++++..+++|+.|+.|+||++..... .+.+.+|.+.|++++|+|+|++|++|+.|++|
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-------~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-------ERTLKGHTDSVQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-------CEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-------EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 334466666654 566778999999999999999875432 35688999999999999999999999999999
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
+|||+.+++ .+..+.+|.
T Consensus 175 ~iwd~~~~~--------------------------------------------------------------~~~~~~~h~ 192 (410)
T 1vyh_C 175 KLWDFQGFE--------------------------------------------------------------CIRTMHGHD 192 (410)
T ss_dssp CEEETTSSC--------------------------------------------------------------EEECCCCCS
T ss_pred EEEeCCCCc--------------------------------------------------------------eeEEEcCCC
Confidence 999997654 334556899
Q ss_pred CCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-E
Q 005646 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-D 431 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~ 431 (686)
..|.+++|+|++ +|++++.|++|++||+.++.++..+. |...|.+++|+| ++.+|++|+.|++|++||+.+++.. .
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~ 271 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAE 271 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeE
Confidence 999999999999 99999999999999999999999887 999999999999 9999999999999999999998876 4
Q ss_pred EeccCCcEEEEEEccC--------------------CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEE
Q 005646 432 WVDIRQIVTAVCYRPD--------------------GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG 491 (686)
Q Consensus 432 ~~~~~~~V~~v~~spd--------------------g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~ 491 (686)
+..|...|.+++|+|+ |.+|++|+.||.|++||+.++.+... ...|...|++
T Consensus 272 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~--------~~~h~~~v~~ 343 (410)
T 1vyh_C 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT--------LVGHDNWVRG 343 (410)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE--------EECCSSCEEE
T ss_pred ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE--------EECCCCcEEE
Confidence 5578899999999996 67899999999999999998875432 2347788999
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 492 FQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 492 l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
++|+| ++.+|++++.|+.|++||.. +.++|+|++++|+||+.||+|+||++
T Consensus 344 v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 344 VLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999 88999999999999999964 24678999999999999999999986
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-37 Score=382.51 Aligned_cols=437 Identities=19% Similarity=0.266 Sum_probs=325.5
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .+|++++.++++|+.|+.|+||+...... ...+.+|.+.|++++|+|+|++||+|+.|++|+|||
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-------~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-------LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-------EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 344544 46778889999999999999999876432 356788999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++.+..+..+...+.++.|.+.....+. + ..+.+..+.+|+... .+.+..+.+|...|.
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~-------------sg~~d~~v~vwd~~~----~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLL-A-------------TGSNDFFLKLWDLNQ----KECRNTMFGHTNSVN 747 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEE-E-------------EEETTSCEEEEETTS----SSEEEEECCCSSCEE
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEE-E-------------EEeCCCeEEEEECCC----cchhheecCCCCCEE
Confidence 9999998888877777666666554322211 1 122233344444332 246778889999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe----------------------------------------------
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---------------------------------------------- 391 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~---------------------------------------------- 391 (686)
+++|+|++ +|++++.|++|++||+.+++....+
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 99999999 9999999999999999876544332
Q ss_pred ----------eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcE
Q 005646 392 ----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460 (686)
Q Consensus 392 ----------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i 460 (686)
.|...|++++|+| ++.++++++.||.|++||+.++..+ ....|...|++++|+|+|+++++++.||.|
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v 906 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTI 906 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeE
Confidence 3677899999999 9999999999999999999998876 556788999999999999999999999999
Q ss_pred EEEeCCCCeeee----eee--------------------EE-----eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 461 RFYNVSDNHLEL----DAE--------------------IC-----VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 461 ~iwd~~~~~~~~----~~~--------------------~~-----~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
++||+.+..... ... .. .......+...+++++|+| ++..+++++.||.|
T Consensus 907 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~g~i 985 (1249)
T 3sfz_A 907 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAI 985 (1249)
T ss_dssp EEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT-TSSEEEEEETTSCC
T ss_pred EEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC-CCCEEEEEcCCCCE
Confidence 999975321100 000 00 0000112346799999999 88999999999999
Q ss_pred EEEeCC---------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCc-cccccccccccccCCcEEEecCCC
Q 005646 512 RILQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAH-DQAKTIRSLERFTTNASIAIPWCG 575 (686)
Q Consensus 512 ~iwd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~s~~g 575 (686)
++|+.. +.++++|+|++|++++.||.|++||+.+++.... .....+..+........++.+.+|
T Consensus 986 ~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg 1065 (1249)
T 3sfz_A 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDG 1065 (1249)
T ss_dssp EEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSS
T ss_pred EEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCC
Confidence 999964 3478999999999999999999999998763211 111222222222224455556666
Q ss_pred C-cCCCCCCCCcccccCCCCCc--ccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhccc
Q 005646 576 L-KCGNAEKEPQLHVSDDDSPE--NLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSC 652 (686)
Q Consensus 576 ~-~~~~~~~g~~l~~~~~~~~~--~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (686)
. ..|+..++..+..+..|... .++|+|| +..+++++.|+++.+|+.........+. +.. ...
T Consensus 1066 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~s~s~d~~v~iwd~~~~~~~~~l~---~h~--------~~v 1130 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSD----ATKFSSTSADKTAKIWSFDLLSPLHELK---GHN--------GCV 1130 (1249)
T ss_dssp EEEEEETTTTCCCEEEECCSSCCCCEEECSS----SSSCEEECCSSCCCEECSSSSSCSBCCC---CCS--------SCE
T ss_pred cEEEEECCCCceeEEEcccCCcEEEEEECCC----CCEEEEEcCCCcEEEEECCCcceeeeec---cCC--------CcE
Confidence 4 78999999998888766644 5578999 5667788999999999976655333221 000 011
Q ss_pred ccCccCCCCceEEEEecCCCeEeEEeec
Q 005646 653 LCTTSSHAWGLVIVTAGWDGRIRSFLNY 680 (686)
Q Consensus 653 ~~~~~~~~~g~~ivT~~~DG~Ir~w~~~ 680 (686)
.++ .++++|..||||+.||+|++|...
T Consensus 1131 ~~~-~~s~dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1131 RCS-AFSLDGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp EEE-EECSSSSEEEEEETTSCCCEEESS
T ss_pred EEE-EECCCCCEEEEEeCCCEEEEEECC
Confidence 122 345679999999999999999854
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-36 Score=321.10 Aligned_cols=269 Identities=19% Similarity=0.366 Sum_probs=230.8
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+. .|++++.++++++.|+.|+||+...... ...+..|...|.+++|+|+|++|++|+.|+.|++|+
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-------ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 4555554 4567788999999999999999765432 345678999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+.... .+....+.+|.+.|.
T Consensus 126 ~~~~~~~----------------------------------------------------------~~~~~~~~~h~~~v~ 147 (340)
T 1got_B 126 LKTREGN----------------------------------------------------------VRVSRELAGHTGYLS 147 (340)
T ss_dssp TTTCSBS----------------------------------------------------------CEEEEEEECCSSCEE
T ss_pred CccCCCc----------------------------------------------------------ceeEEEecCCCccEE
Confidence 8764310 012456678999999
Q ss_pred EEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccC
Q 005646 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIR 436 (686)
Q Consensus 359 ~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~ 436 (686)
++.|++++.|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++|+.|++|++||++++..+ .+..|.
T Consensus 148 ~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~ 226 (340)
T 1got_B 148 CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226 (340)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred EEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc
Confidence 9999999999999999999999999999999887 999999999999 9999999999999999999998876 455688
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..|++++|+|++++|++|+.||+|++||+..++..... ....+...|++++|+| ++.+|++++.|+.|++||.
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~------~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY------SHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE------ccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEc
Confidence 99999999999999999999999999999887654211 1223345799999999 8899999999999999996
Q ss_pred C---------------cceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 517 P---------------NVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 517 ~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
. ..++++|+|++|+||+.|++|+|||
T Consensus 300 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 4 2477899999999999999999997
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3e-37 Score=334.12 Aligned_cols=233 Identities=20% Similarity=0.374 Sum_probs=199.5
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
...+.+|.++|++++|+|++++|+||+.||+|+|||+.+++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--------------------------------------- 141 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--------------------------------------- 141 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---------------------------------------
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------------------
Confidence 35678999999999999999999999999999999998765
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v 400 (686)
....+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|+++
T Consensus 142 -----------------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v 198 (410)
T 1vyh_C 142 -----------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 198 (410)
T ss_dssp -----------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE
T ss_pred -----------------------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEE
Confidence 346677899999999999999 99999999999999999999998887 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
+|+| ++++|++|+.|++|++||++++.++ .+..|...|.+++|+|+|++|++|+.||.|++||+.++.....
T Consensus 199 ~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~------ 271 (410)
T 1vyh_C 199 SIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE------ 271 (410)
T ss_dssp EECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE------
T ss_pred EEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE------
Confidence 9999 9999999999999999999999876 5567889999999999999999999999999999988765431
Q ss_pred ccccCCCCCeEEEEEeCCC-------------------CCeEEEEeCCCcEEEEeCCc---------------ceeEcCC
Q 005646 480 SKKKAPCKRITGFQFLPQD-------------------SSKVMVSCADSQVRILQGPN---------------VIGKYKD 525 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~-------------------~~~l~~~s~D~~I~iwd~~~---------------~~~~~~d 525 (686)
...|...|.+++|+|.. +.+|++++.|+.|++||..+ .++++|+
T Consensus 272 --~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 349 (410)
T 1vyh_C 272 --LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG 349 (410)
T ss_dssp --ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred --ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCC
Confidence 24567889999999942 45677777777777777542 3566677
Q ss_pred CCEEEEEeCCCcEEEEeCCCC
Q 005646 526 GKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 526 g~~l~sgs~Dg~V~iWd~~~~ 546 (686)
|++|++|+.||+|+|||+.++
T Consensus 350 g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 350 GKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp SSCEEEEETTTEEEEECCTTS
T ss_pred CCEEEEEeCCCeEEEEECCCC
Confidence 777777777777777777553
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=322.24 Aligned_cols=267 Identities=19% Similarity=0.342 Sum_probs=229.9
Q ss_pred cccCcceeeec------CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcE
Q 005646 201 DKQGEGERVRL------NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (686)
Q Consensus 201 ~~~~~~~~~s~------~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (686)
.|...+.++++ ++..+++|+.|++|+||++...... ....+.+|...|.+++|++++.+|++++.|++|
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-----~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-----LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-----EEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-----eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 46666666554 3458999999999999998654322 124578999999999999999999999999999
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
++||+.+++. +..+..|.
T Consensus 105 ~lWd~~~~~~--------------------------------------------------------------~~~~~~~~ 122 (321)
T 3ow8_A 105 RLWDLENGKQ--------------------------------------------------------------IKSIDAGP 122 (321)
T ss_dssp EEEETTTTEE--------------------------------------------------------------EEEEECCT
T ss_pred EEEECCCCCE--------------------------------------------------------------EEEEeCCC
Confidence 9999988763 33445677
Q ss_pred CCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-
Q 005646 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD- 431 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~- 431 (686)
..+.+++|+|++ +|++++.|++|++||+.+++....+. |...|.+++|+| ++++|++|+.||.|++||+++++.+.
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~ 201 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHT 201 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 889999999999 99999999999999999999888877 888999999999 99999999999999999999998774
Q ss_pred EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 432 WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 432 ~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
+..|...|++++|+|++++|++|+.||.|++||+.+..+.. ....|...|.+++|+| ++..|++++.|+.|
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~--------~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG--------TLSGHASWVLNVAFCP-DDTHFVSSSSDKSV 272 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE--------EECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE--------EEcCCCCceEEEEECC-CCCEEEEEeCCCcE
Confidence 45688899999999999999999999999999998776432 1345778899999999 78999999999999
Q ss_pred EEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 512 RILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 512 ~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
++||..+ .++|+|++++|++++.||+|+|||+.
T Consensus 273 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999753 36788999999999999999999963
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.8e-36 Score=340.58 Aligned_cols=363 Identities=25% Similarity=0.360 Sum_probs=282.5
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..+++++..+++++.++.|++|+.... ..+.+.+|...|.+++|+|++++|++++.|+.|++||. +++.+.
T Consensus 186 ~~~~~~~~~l~~~~~d~~v~~w~~~~~--------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~ 256 (577)
T 2ymu_A 186 VAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 256 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTTSC--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEE
T ss_pred eeecCCCCEEEEEcCCCEEEEEeCCCc--------EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEE
Confidence 456788889999999999999985432 12457789999999999999999999999999999996 455555
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
.+..+...+.++.+. +++...+. .+.+..+.+|+ ...+.+..+.+|...|.+++|+|++
T Consensus 257 ~~~~~~~~v~~v~~~-------------~d~~~l~~---~~~d~~i~~w~-----~~~~~~~~~~~h~~~v~~~~~~~~~ 315 (577)
T 2ymu_A 257 TLTGHSSSVNGVAFR-------------PDGQTIAS---ASDDKTVKLWN-----RNGQLLQTLTGHSSSVWGVAFSPDG 315 (577)
T ss_dssp EECCCSSCEEEEEEC-------------TTSSEEEE---EETTSCEEEEE-----TTSCEEEEECCCSSCEEEEEECTTS
T ss_pred EEecCCCCEEEEEEc-------------CCCCEEEE---EeCCCEEEEEe-----CCCcEEEEEecCCCCeEEEEECCCC
Confidence 555554444444433 33322221 12223333333 3346678889999999999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEc
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~s 445 (686)
+|++++.|++|++||+..........|...|++++|+| ++++|++|+.||.|++||.....+.....|...|++++|+
T Consensus 316 ~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s 394 (577)
T 2ymu_A 316 QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 394 (577)
T ss_dssp SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEEC
T ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEEC
Confidence 99999999999999987766554445999999999999 9999999999999999997655555777889999999999
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC--------
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------- 517 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-------- 517 (686)
|+|++|++++.|+.|++||.....+. ....|...|++++|+| ++.+|++++.|+.|++||..
T Consensus 395 ~dg~~l~~~~~d~~v~~~~~~~~~~~---------~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~~~~~~~~ 464 (577)
T 2ymu_A 395 PDGQTIASASDDKTVKLWNRNGQLLQ---------TLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLLQTLT 464 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTTCCEEE---------EEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCEEE---------EecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCCCEEEEEc
Confidence 99999999999999999997543211 1245678899999999 78999999999999999853
Q ss_pred ------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccC-CcEEEecCCCC-----------cCC
Q 005646 518 ------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCGL-----------KCG 579 (686)
Q Consensus 518 ------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~-----------~~~ 579 (686)
+.++++|++++|++++.|+.|+|||... + .++.+..+.. ...++|+++|. ++|
T Consensus 465 ~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~--------~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q--------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C--------EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence 2478999999999999999999999643 2 2233333333 44555555543 578
Q ss_pred CCCCCCcccccCCCCCc--ccccCCCccccCccccccCCCCCCCCCC
Q 005646 580 NAEKEPQLHVSDDDSPE--NLAFAPARFSLGQEYVFESFPKGCATWP 624 (686)
Q Consensus 580 ~~~~g~~l~~~~~~~~~--~~~~spd~~~~~~~~~~~s~d~~~~~W~ 624 (686)
+. ++..+..+.+|... .++|+|| +..+++++.|+++++|+
T Consensus 536 d~-~~~~~~~~~~h~~~v~~~~fs~d----g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 536 NR-NGQLLQTLTGHSSSVWGVAFSPD----GQTIASASSDKTVKLWN 577 (577)
T ss_dssp CT-TSCEEEEEECCSSCEEEEEECTT----SSCEEEEETTSCEEEEC
T ss_pred eC-CCCEEEEEcCCCCCEEEEEEcCC----CCEEEEEeCCCEEEEeC
Confidence 84 68888888887765 4679999 56778889999999996
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=316.74 Aligned_cols=233 Identities=21% Similarity=0.392 Sum_probs=202.9
Q ss_pred eecccCCceEEEEEeeC----CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeecccccee
Q 005646 245 EIQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (686)
.+++|.+.|++++|+|+ +.+|+||+.|++|+||++.++..
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------------------------------------ 70 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL------------------------------------ 70 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE------------------------------------
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe------------------------------------
Confidence 45689999999999984 67999999999999999976541
Q ss_pred EEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeE
Q 005646 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVT 398 (686)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~ 398 (686)
.....+.+|...|.+++|++++ ++++++.|++|++||+.+++++..+. |...+.
T Consensus 71 ------------------------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~ 126 (321)
T 3ow8_A 71 ------------------------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126 (321)
T ss_dssp ------------------------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC
T ss_pred ------------------------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE
Confidence 1234567899999999999999 99999999999999999999998887 888999
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
+++|+| ++++|++|+.||.|++||+++++.. .+..+...|.+++|+|+|++|++|+.||.|++||+.++++...
T Consensus 127 ~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~---- 201 (321)
T 3ow8_A 127 TLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT---- 201 (321)
T ss_dssp CEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----
T ss_pred EEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE----
Confidence 999999 9999999999999999999988766 4556778899999999999999999999999999998875432
Q ss_pred eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
...|...|++++|+| ++.+|++++.|+.|++||..+ .++|+|++++|++|+.|++|+|||
T Consensus 202 ----~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 202 ----LEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp ----ECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----EcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 245678899999999 788999999999999999642 367899999999999999999999
Q ss_pred CCCCC
Q 005646 543 CIGHE 547 (686)
Q Consensus 543 ~~~~~ 547 (686)
+.+++
T Consensus 277 ~~~~~ 281 (321)
T 3ow8_A 277 VGTRT 281 (321)
T ss_dssp TTTTE
T ss_pred CCCCE
Confidence 97654
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.5e-37 Score=322.24 Aligned_cols=276 Identities=17% Similarity=0.203 Sum_probs=216.3
Q ss_pred CcceeeecCCCccceeeccceEEEEEcCCcc----ccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRS----KELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 204 ~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~----~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
....+|+++|..+++++ ++++++|+..... ..............|...|.+++|+|++ +|++|+.||+|+|||+
T Consensus 33 v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 33 LEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEec
Confidence 34567888888877766 7777777532110 0000111112234577889999999985 7889999999999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+++.+..+ ...+.+|.+.|.+
T Consensus 111 ~~~~~~~~~----------------------------------------------------------~~~~~~H~~~V~~ 132 (344)
T 4gqb_B 111 DENETLIVS----------------------------------------------------------KFCKYEHDDIVST 132 (344)
T ss_dssp CTTSSCEEE----------------------------------------------------------EEEEECCSSCEEE
T ss_pred cCCCceeEe----------------------------------------------------------eccccCCCCCEEE
Confidence 887633211 1334689999999
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe---c
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---D 434 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~ 434 (686)
++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+|.+..+|++|+.|++|++||+++++..... .
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 212 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA 212 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce
Confidence 9999999 99999999999999999999999998 99999999999944468999999999999999998876544 3
Q ss_pred cCCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 435 IRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 435 ~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
+...+++++|+|+ +++|++|+.||+|++||++++++... ...|...|++++|+|+...+|++++.|++|+|
T Consensus 213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~--------~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS--------SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE--------EECCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE--------EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence 4557999999994 56889999999999999998775432 34577889999999955578999999999999
Q ss_pred EeCCc--------------ceeEcCCCC-EEEEEeCCCcEEEEeCCCCC
Q 005646 514 LQGPN--------------VIGKYKDGK-HIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 514 wd~~~--------------~~~~~~dg~-~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||..+ .++|+|+++ +|+|||.|++|++|++.+..
T Consensus 285 wd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 285 LDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99653 478999886 67799999999999998765
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-36 Score=315.89 Aligned_cols=272 Identities=17% Similarity=0.332 Sum_probs=223.9
Q ss_pred ecccCcceeeecC--C-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 200 VDKQGEGERVRLN--E-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 200 ~~~~~~~~~~s~~--~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
..|...+.++.+. + +.+++|+.|++|++|++....... ......+.+|...|++++|+|+|++|+||+.|++|+|
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 4577777665543 3 679999999999999986432211 1223568899999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++ .+..+.+|...
T Consensus 92 wd~~~~~--------------------------------------------------------------~~~~~~~h~~~ 109 (319)
T 3frx_A 92 WDVATGE--------------------------------------------------------------TYQRFVGHKSD 109 (319)
T ss_dssp EETTTTE--------------------------------------------------------------EEEEEECCSSC
T ss_pred EECCCCC--------------------------------------------------------------eeEEEccCCCc
Confidence 9998876 34556789999
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeec-----CCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV-----DDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~-----~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
|.+++|+|++ +|++++.|++|++||+..........|...|.+++|+|. ++.+|++++.|++|++||+++.+..
T Consensus 110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 189 (319)
T 3frx_A 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189 (319)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh
Confidence 9999999999 999999999999999975444333449999999999983 2348999999999999999998866
Q ss_pred -EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 005646 431 -DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 431 -~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~ 509 (686)
.+..|...|++++|+|+|++|++|+.||.|++||+.+.+...... +...|.+++|+| ++..+++++. .
T Consensus 190 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~sp-~~~~la~~~~-~ 258 (319)
T 3frx_A 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS---------AQDEVFSLAFSP-NRYWLAAATA-T 258 (319)
T ss_dssp EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------CCSCEEEEEECS-SSSEEEEEET-T
T ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEcC-CCCEEEEEcC-C
Confidence 566789999999999999999999999999999999887543221 235799999999 7777777665 4
Q ss_pred cEEEEeCC-----------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 510 QVRILQGP-----------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 510 ~I~iwd~~-----------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.+++|+.. ..++|+|||++|++|+.||.|+|||+.+.
T Consensus 259 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 259 GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 59999743 13689999999999999999999998763
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=319.98 Aligned_cols=276 Identities=20% Similarity=0.335 Sum_probs=223.9
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+|++++..+++|+.|+.|+||+......... .....+|...|++++|+|+|++||+|+.|++|+||++.++..
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~- 95 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF- 95 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-
Confidence 367888999999999999999999865422111 112368999999999999999999999999999999876431
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
+.+..+.+|...|.+++|+|+
T Consensus 96 -----------------------------------------------------------~~~~~~~~h~~~v~~v~~sp~ 116 (345)
T 3fm0_A 96 -----------------------------------------------------------ECVTTLEGHENEVKSVAWAPS 116 (345)
T ss_dssp -----------------------------------------------------------EEEEEECCCSSCEEEEEECTT
T ss_pred -----------------------------------------------------------EEEEEccCCCCCceEEEEeCC
Confidence 134567889999999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCe---eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE---EEeccCC
Q 005646 366 N-YLLSASIDKTVRLWRVGNDH---CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV---DWVDIRQ 437 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~---~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~~~ 437 (686)
+ +|++++.|++|++||+.++. ++..+. |...|++++|+| ++++|++|+.|++|++||++++... .+.+|..
T Consensus 117 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~ 195 (345)
T 3fm0_A 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHES 195 (345)
T ss_dssp SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC
Confidence 9 99999999999999998763 455555 999999999999 9999999999999999999887533 5667899
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee-------ee-EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD-------AE-ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~-------~~-~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~ 509 (686)
.|++++|+|+|++|++|+.||+|++||......... .. .........|...|.+++|+| ++..|++++.|+
T Consensus 196 ~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~ 274 (345)
T 3fm0_A 196 TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDD 274 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETTS
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCCC
Confidence 999999999999999999999999999632211000 00 011112234778899999999 788999999999
Q ss_pred cEEEEeCC------------------------cceeEcCCC-CEEEEEeCCCcEEEEeCCCCC
Q 005646 510 QVRILQGP------------------------NVIGKYKDG-KHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 510 ~I~iwd~~------------------------~~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.|++|+.. +.++|+|++ .+||||+.||+|+||++.+++
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 99999742 246789987 599999999999999998876
No 14
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.6e-36 Score=339.06 Aligned_cols=425 Identities=15% Similarity=0.120 Sum_probs=295.4
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCc-eEEEEEee--CCCEEEEEeCCCcEEEEEeec
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGS-ILTMKFSP--DGQYLASAGDDGVVRLWQVVE 281 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fsp--dg~~Lasgs~Dg~I~vWd~~~ 281 (686)
...+|+++++++++++ ++.|+||++...... ......+.+|... |++++|+| ++++||+|+.||.|+|||+.+
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~ 97 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK---VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 97 (615)
T ss_dssp CCCEEETTTTEEEEEE-TTEEEEEECCSSCCS---SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred eEEEECCCCCEEEEec-CCeEEEEECCCCCCc---cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence 3466788888999888 889999998754111 0123568899999 99999999 999999999999999999985
Q ss_pred C--------eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec-cCCceEEEeCCccccccCCCeEEecc
Q 005646 282 D--------ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR-TSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 282 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
+ ..+..+..+...+.++ .+.+++...+..... .....+.+|+ ..+.+..+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~v~~~-------------~~s~~~~~l~~~~~~~~~~~~v~~~d------~~~~~~~~~~ 158 (615)
T 1pgu_A 98 DKESNSVEVNVKSEFQVLAGPISDI-------------SWDFEGRRLCVVGEGRDNFGVFISWD------SGNSLGEVSG 158 (615)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEE-------------EECTTSSEEEEEECCSSCSEEEEETT------TCCEEEECCS
T ss_pred CcccccccccccchhhcccccEEEE-------------EEeCCCCEEEEeccCCCCccEEEEEE------CCCcceeeec
Confidence 5 4444444444444344 344433333222211 1113444444 2356788899
Q ss_pred CCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCC---CeEEEEEeecC-CCEEEEEEcCCcEEEEecC
Q 005646 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSN---YVTCVHFNPVD-DNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 353 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~---~V~~v~fsp~~-~~~l~sgs~Dg~V~iwd~~ 425 (686)
|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |.. .|++++|+| + +++|++++.||.|++||++
T Consensus 159 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 159 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETT
T ss_pred CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECC
Confidence 99999999999998 79999999999999999999999888 888 999999999 7 9999999999999999999
Q ss_pred CCcEEEEe-----ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE-----------------------
Q 005646 426 SCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC----------------------- 477 (686)
Q Consensus 426 ~~~~~~~~-----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~----------------------- 477 (686)
+++.+... .|...|.+++|+ ++++|++++.||.|++||+.+++........
T Consensus 238 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 316 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 316 (615)
T ss_dssp TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE
Confidence 99988766 789999999999 9999999999999999999877654321110
Q ss_pred --------------eeccccCCCCCeEEEEEeCC--------------------------------CCCeEEEEeCCCcE
Q 005646 478 --------------VHSKKKAPCKRITGFQFLPQ--------------------------------DSSKVMVSCADSQV 511 (686)
Q Consensus 478 --------------~~~~~~~~~~~I~~l~fsp~--------------------------------~~~~l~~~s~D~~I 511 (686)
.......|...|++++| |+ ++..+++++.|+.|
T Consensus 317 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i 395 (615)
T 1pgu_A 317 LDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTL 395 (615)
T ss_dssp TTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEE
T ss_pred CCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCE
Confidence 01112234444555544 31 24556666666666
Q ss_pred EEEeCCc--------ceeEcCC--------------------------------------CCEEEEEeC-CCcEEEEeCC
Q 005646 512 RILQGPN--------VIGKYKD--------------------------------------GKHIVSAGE-DSNVYMWNCI 544 (686)
Q Consensus 512 ~iwd~~~--------~~~~~~d--------------------------------------g~~l~sgs~-Dg~V~iWd~~ 544 (686)
++|+..+ .++++|+ +++|++++. |+.|++||+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~ 475 (615)
T 1pgu_A 396 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS 475 (615)
T ss_dssp EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred EEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECC
Confidence 6665432 1122221 667777777 8888888877
Q ss_pred CCCCCCccccccccccccccC-CcEEEecCCCC-----------cCCCCCCCCcccccCC-CC--CcccccCC-------
Q 005646 545 GHEEPAHDQAKTIRSLERFTT-NASIAIPWCGL-----------KCGNAEKEPQLHVSDD-DS--PENLAFAP------- 602 (686)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~~g~-----------~~~~~~~g~~l~~~~~-~~--~~~~~~sp------- 602 (686)
++... . ..+..+.. ...++++.+|. .+|+..++..+..+.. |. ...++|+|
T Consensus 476 ~~~~~------~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 548 (615)
T 1pgu_A 476 DLEVS------F-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 548 (615)
T ss_dssp EEEEE------E-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred Ccccc------c-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccc
Confidence 64311 0 11112222 33444444432 6899999999888775 54 34567899
Q ss_pred ---CccccCccccccCCCCCCCCCCCCcCC-CccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEe
Q 005646 603 ---ARFSLGQEYVFESFPKGCATWPEEKLP-ALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 678 (686)
Q Consensus 603 ---d~~~~~~~~~~~s~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~ 678 (686)
+ +..+++++.|+.+.+|+.+... ....+ ..|. ....++ .++++|. |+||+.||+|++|+
T Consensus 549 ~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~h~----~~v~~l-~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 549 EEIE----EDLVATGSLDTNIFIYSVKRPMKIIKAL-------NAHK----DGVNNL-LWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp -CCS----CCEEEEEETTSCEEEEESSCTTCCEEET-------TSST----TCEEEE-EEEETTE-EEEEETTSCEEEEE
T ss_pred cccC----CCEEEEEcCCCcEEEEECCCCceechhh-------hcCc----cceEEE-EEcCCCC-eEEecCCceEEEEe
Confidence 7 5677788999999999977652 11111 1110 111222 3445688 99999999999997
Q ss_pred e
Q 005646 679 N 679 (686)
Q Consensus 679 ~ 679 (686)
.
T Consensus 612 ~ 612 (615)
T 1pgu_A 612 V 612 (615)
T ss_dssp E
T ss_pred e
Confidence 4
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.9e-36 Score=316.35 Aligned_cols=275 Identities=17% Similarity=0.267 Sum_probs=221.1
Q ss_pred eecccCcceeeec--------CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC
Q 005646 199 VVDKQGEGERVRL--------NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD 270 (686)
Q Consensus 199 ~~~~~~~~~~~s~--------~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 270 (686)
...|...+.++.+ ++..+++|+.|++|+||++...............+.+|...|++++|+|++.+|+||+.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 3456666766643 67789999999999999986543211112223568899999999999999999999999
Q ss_pred CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 271 Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
|++|+|||+.+++ .+..+
T Consensus 97 D~~v~lwd~~~~~--------------------------------------------------------------~~~~~ 114 (343)
T 2xzm_R 97 DKTLRLWDLRTGT--------------------------------------------------------------TYKRF 114 (343)
T ss_dssp TSEEEEEETTSSC--------------------------------------------------------------EEEEE
T ss_pred CCcEEEEECCCCc--------------------------------------------------------------EEEEE
Confidence 9999999998765 34556
Q ss_pred ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe---eCCCCeEEEEEeecCC----------CEEEEEEcC
Q 005646 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNPVDD----------NYFISGSID 416 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~---~h~~~V~~v~fsp~~~----------~~l~sgs~D 416 (686)
.+|...|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++ .+|++++.|
T Consensus 115 ~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d 193 (343)
T 2xzm_R 115 VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWD 193 (343)
T ss_dssp ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETT
T ss_pred cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCC
Confidence 7899999999999999 9999999999999999854443333 3889999999999 55 799999999
Q ss_pred CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
|+|++||........+..|...|++++|+|+|++|++|+.||.|++||+........ .. .+...|.+++|+|
T Consensus 194 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~---~~-----~~~~~v~~v~~sp 265 (343)
T 2xzm_R 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR---EF-----DAGSTINQIAFNP 265 (343)
T ss_dssp SEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE---EE-----ECSSCEEEEEECS
T ss_pred CEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce---ee-----cCCCcEEEEEECC
Confidence 999999965544556778999999999999999999999999999999954332111 01 1235699999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCc----------------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 497 QDSSKVMVSCADSQVRILQGPN----------------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 497 ~~~~~l~~~s~D~~I~iwd~~~----------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
++.++ +++.|+.|++|+..+ .++|+|+|++|++|+.||.|++|++.++
T Consensus 266 -~~~~l-a~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 266 -KLQWV-AVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp -SSCEE-EEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred -CCCEE-EEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 55555 466788999998531 3678999999999999999999998764
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-36 Score=313.76 Aligned_cols=284 Identities=20% Similarity=0.275 Sum_probs=215.5
Q ss_pred eecccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCcee-c-ccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 199 VVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI-Q-AHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 199 ~~~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l-~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
...|...+.++.++++.+++|+.|+.|+||++....... ...+ . +|...|++++|+|++++||+|+.|++|+|
T Consensus 10 ~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~-----~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTL-----IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEE-----EEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEE-----EEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 346777888888888899999999999999987532211 1223 3 39999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+....... ...+++..+.+|...
T Consensus 85 w~~~~~~~~~-------------------------------------------------------~~~~~~~~~~~h~~~ 109 (330)
T 2hes_X 85 WAKEESADRT-------------------------------------------------------FEMDLLAIIEGHENE 109 (330)
T ss_dssp EEC--------------------------------------------------------------CCCEEEEEEC----C
T ss_pred EEcccCcCcc-------------------------------------------------------ccceeEEEEcCCCCc
Confidence 9986432000 000235667899999
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCC----CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC--c
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--H 428 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~----~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~--~ 428 (686)
|.+++|+|++ +|++++.|++|++||+.. .+++..+. |...|++++|+| ++.+|++|+.|++|++||+.++ +
T Consensus 110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~ 188 (330)
T 2hes_X 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWE 188 (330)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCee
Confidence 9999999999 999999999999999943 25666666 999999999999 9999999999999999999876 3
Q ss_pred EE-EEeccCCcEEEEEEccC--CCEEEEEecCCcEEEEeCCCCeeeeeeeE-EeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 429 VV-DWVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEI-CVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 429 ~~-~~~~~~~~V~~v~~spd--g~~l~~gs~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
++ .+..|...|.+++|+|+ +.+|++|+.|++|++||+........... ........|...|++++|++ + ..|++
T Consensus 189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~-~~l~s 266 (330)
T 2hes_X 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-N-GLIAS 266 (330)
T ss_dssp EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-T-SCEEE
T ss_pred EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-C-CEEEE
Confidence 33 55678999999999998 77899999999999999865321110111 11111233778899999997 3 48999
Q ss_pred EeCCCcEEEEeCCc-------------------ceeEcC--CCCEEEEEeCCCcEEEEeCCC
Q 005646 505 SCADSQVRILQGPN-------------------VIGKYK--DGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 505 ~s~D~~I~iwd~~~-------------------~~~~~~--dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
++.|+.|++|+..+ .++++| ++++|+||+.||+|+||++..
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999998421 245667 689999999999999999865
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-35 Score=310.01 Aligned_cols=236 Identities=20% Similarity=0.324 Sum_probs=203.0
Q ss_pred CceecccCCceEEEEEeeCC-CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 243 GQEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
..+|.+|.+.|++++|+|++ ++|+||+.|++|++|++.......
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~----------------------------------- 54 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF----------------------------------- 54 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-----------------------------------
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-----------------------------------
Confidence 35688999999999999964 899999999999999986532100
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~ 399 (686)
..++..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+
T Consensus 55 ----------------------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~ 112 (319)
T 3frx_A 55 ----------------------GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112 (319)
T ss_dssp ----------------------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred ----------------------cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEE
Confidence 12467788999999999999999 99999999999999999999998887 9999999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccC------CCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD------GQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spd------g~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
++|+| ++.+|++|+.|++|++||++...+..+..|...|.+++|.|. +..+++++.|+.|++||+.+.+...
T Consensus 113 ~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~- 190 (319)
T 3frx_A 113 VDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA- 190 (319)
T ss_dssp EEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE-
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-
Confidence 99999 999999999999999999988777788889999999999995 4589999999999999998876432
Q ss_pred eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEE
Q 005646 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVY 539 (686)
Q Consensus 474 ~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~ 539 (686)
....|...|++++|+| ++.+|++++.|+.|++||..+ .++|+|++.+|++++.+ .++
T Consensus 191 -------~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~ 261 (319)
T 3frx_A 191 -------DFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIK 261 (319)
T ss_dssp -------EECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEE
T ss_pred -------eecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcE
Confidence 1345778999999999 788999999999999998653 36788899988888755 489
Q ss_pred EEeCCCC
Q 005646 540 MWNCIGH 546 (686)
Q Consensus 540 iWd~~~~ 546 (686)
+|+++.+
T Consensus 262 v~~~~~~ 268 (319)
T 3frx_A 262 VFSLDPQ 268 (319)
T ss_dssp EEEETTE
T ss_pred EEEeCcC
Confidence 9988754
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=312.84 Aligned_cols=238 Identities=23% Similarity=0.334 Sum_probs=202.2
Q ss_pred CceecccCC-ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 243 GQEIQAHDG-SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 243 ~~~l~~H~~-~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
.+++.+|.. .|++++|+|+|++||||+.|++|+|||+.++.....
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~---------------------------------- 53 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK---------------------------------- 53 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----------------------------------
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----------------------------------
Confidence 356788988 999999999999999999999999999987642110
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC--eeeeEee-CCCCe
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSNYV 397 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~~~~~-h~~~V 397 (686)
.....+|...|.+++|+|++ +|++++.|++|+|||+..+ +++..+. |...|
T Consensus 54 -------------------------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v 108 (345)
T 3fm0_A 54 -------------------------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEV 108 (345)
T ss_dssp -------------------------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCE
T ss_pred -------------------------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCc
Confidence 11235799999999999999 9999999999999999876 4566666 99999
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEecCCCcE---E-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV---V-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~---~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
++++|+| ++++|++|+.|++|++||+.++.. + .+..|...|++++|+|++++|++|+.|+.|++||+..+.....
T Consensus 109 ~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~ 187 (345)
T 3fm0_A 109 KSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC 187 (345)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE
T ss_pred eEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE
Confidence 9999999 999999999999999999987642 2 4556888999999999999999999999999999987654321
Q ss_pred eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-------------------------------cceeE
Q 005646 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------------------------------NVIGK 522 (686)
Q Consensus 474 ~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-------------------------------~~~~~ 522 (686)
. ....|...|++++|+| ++.+|++++.|++|++|+.. ..+++
T Consensus 188 ~------~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 260 (345)
T 3fm0_A 188 A------TLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260 (345)
T ss_dssp E------EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEE
T ss_pred E------EecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEE
Confidence 1 2345778999999999 88999999999999999841 13678
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++++.+|++++.|+.|++|+.....
T Consensus 261 ~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 261 CQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp CTTTCCEEEEETTSCEEEEEECTTS
T ss_pred ecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 8899999999999999999987654
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-35 Score=307.72 Aligned_cols=266 Identities=20% Similarity=0.294 Sum_probs=221.3
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .+|++++.++++++.|+.|+||++..... ...+.+|..+|.+++|+|++++|++|+.|++|++||
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 455555 56778888999999999999999865432 356778999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++ .+..+.+|...|.
T Consensus 84 ~~~~~--------------------------------------------------------------~~~~~~~h~~~v~ 101 (304)
T 2ynn_A 84 YNTGE--------------------------------------------------------------KVVDFEAHPDYIR 101 (304)
T ss_dssp TTTCC--------------------------------------------------------------EEEEEECCSSCEE
T ss_pred CCCCc--------------------------------------------------------------EEEEEeCCCCcEE
Confidence 98765 3456678999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCC-eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEe
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWV 433 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~-~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~ 433 (686)
+++|+|++ +|++|+.|++|++||+.++ .+...+. |...|++++|+|.++.+|++|+.|++|++||+++.... ...
T Consensus 102 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~ 181 (304)
T 2ynn_A 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred EEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc
Confidence 99999999 9999999999999999887 4555565 99999999999966789999999999999999876643 223
Q ss_pred ccCCcEEEEEEcc--CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 434 DIRQIVTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 434 ~~~~~V~~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
.+...+..++|+| ++++|++|+.||+|++||+.++++... ...|...|+.++|+| ++..|++++.|+.|
T Consensus 182 ~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~--------~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i 252 (304)
T 2ynn_A 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--------LEGHMSNVSFAVFHP-TLPIIISGSEDGTL 252 (304)
T ss_dssp CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE--------EECCSSCEEEEEECS-SSSEEEEEETTSCE
T ss_pred CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee--------eCCCCCCEEEEEECC-CCCEEEEEcCCCeE
Confidence 4567899999987 788999999999999999998875432 345778899999999 78899999999999
Q ss_pred EEEeCCc---------------ceeEcCCCC--EEEEEeCCCcEEEEeCCC
Q 005646 512 RILQGPN---------------VIGKYKDGK--HIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 512 ~iwd~~~---------------~~~~~~dg~--~l~sgs~Dg~V~iWd~~~ 545 (686)
++||..+ .++++|++. +|++|+.|| +.+|++.+
T Consensus 253 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 9999653 256677775 577777654 77887765
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-35 Score=307.61 Aligned_cols=235 Identities=15% Similarity=0.299 Sum_probs=205.6
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.++|.+|.+.|++++|+|++++|++|+.||+|+|||+.++.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--------------------------------------- 46 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--------------------------------------- 46 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------------------
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------------------------------------
Confidence 35688999999999999999999999999999999998765
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v 400 (686)
.+..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|+++
T Consensus 47 -----------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 103 (304)
T 2ynn_A 47 -----------------------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (304)
T ss_dssp -----------------------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred -----------------------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 234556788999999999999 99999999999999999999998887 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
+|+| ++++|++|+.|++|++||++++... .+..|...|++++|+| ++..|++|+.||+|++||+.........
T Consensus 104 ~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~--- 179 (304)
T 2ynn_A 104 AVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--- 179 (304)
T ss_dssp EECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---
T ss_pred EEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---
Confidence 9999 9999999999999999999987433 4567889999999999 6789999999999999999776543211
Q ss_pred eeccccCCCCCeEEEEEeCC-CCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEE
Q 005646 478 VHSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~-~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
...+...+..+.|+|. ++.+|++++.|+.|++||..+ .++++|++++|++|+.||+|+||
T Consensus 180 ----~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 180 ----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255 (304)
T ss_dssp ----ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ----ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 2235567999999874 567999999999999999653 36789999999999999999999
Q ss_pred eCCCCC
Q 005646 542 NCIGHE 547 (686)
Q Consensus 542 d~~~~~ 547 (686)
|+.+++
T Consensus 256 d~~~~~ 261 (304)
T 2ynn_A 256 NSSTYK 261 (304)
T ss_dssp ETTTCC
T ss_pred ECCCCc
Confidence 998865
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-35 Score=312.57 Aligned_cols=273 Identities=20% Similarity=0.296 Sum_probs=229.2
Q ss_pred ecccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 200 VDKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 200 ~~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
..|...+. +|++++.++++|+.|+.|+||+...... .+.+..|...|.+++|+|+|.+||+|+.|+.+++|
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-------~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-------EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-------EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-------ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 35666664 5667788999999999999999765432 24566789999999999999999999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
++........ ......+.+|...|
T Consensus 134 ~~~~~~~~~~--------------------------------------------------------~~~~~~~~~h~~~v 157 (354)
T 2pbi_B 134 PLTFDKNENM--------------------------------------------------------AAKKKSVAMHTNYL 157 (354)
T ss_dssp ECCCCTTCCS--------------------------------------------------------GGGCEEEEECSSCE
T ss_pred EEeccccccc--------------------------------------------------------cccceeeeccCCcE
Confidence 9865321000 02345567899999
Q ss_pred eEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCCCcEEE-Ee
Q 005646 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVD-WV 433 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~ 433 (686)
.+++|+|++ .|++++.|++|++||+.+++++..+. |...|.+++|+|. ++++|++|+.||+|++||+++++++. +.
T Consensus 158 ~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~ 237 (354)
T 2pbi_B 158 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237 (354)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 999999999 99999999999999999999999887 9999999999883 35899999999999999999998774 45
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
.|...|++++|+|++++|++|+.|++|++||++..+.... .. ...+...+++++|+| ++.+|++++.|+.|++
T Consensus 238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~-----~~-~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~v 310 (354)
T 2pbi_B 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI-----YS-KESIIFGASSVDFSL-SGRLLFAGYNDYTINV 310 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-----EC-CTTCCSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-----Ec-CCCcccceeEEEEeC-CCCEEEEEECCCcEEE
Confidence 6889999999999999999999999999999988754321 11 122345689999999 8899999999999999
Q ss_pred EeCC---------------cceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 514 LQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 514 wd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
||.. +.++|+|||++|++|+.||+|+||+
T Consensus 311 wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 311 WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9964 2478999999999999999999996
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.2e-36 Score=318.82 Aligned_cols=256 Identities=16% Similarity=0.179 Sum_probs=185.6
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC------CCcEEEEEeecCeeeeeec
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD------DGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~------Dg~I~vWd~~~~~~~~~~~ 289 (686)
++.+..+.....|++.. ....+|+..|++++|+|||++||||+. |+.|++|+..++....
T Consensus 19 ~~~~~g~~~~~~w~~p~-----------~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--- 84 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPV-----------TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--- 84 (357)
T ss_dssp --------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---
T ss_pred EEecCCCccccccCCCC-----------CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce---
Confidence 34445567778886532 223469999999999999999999998 6677777766554211
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~ 369 (686)
.......+|...|.+++|+|++.++
T Consensus 85 -------------------------------------------------------~~~~~~~~~~~~V~~~~~s~d~~~l 109 (357)
T 4g56_B 85 -------------------------------------------------------SLCTAGVQTEAGVTDVAWVSEKGIL 109 (357)
T ss_dssp -------------------------------------------------------GGCSEEEECSSCEEEEEEETTTEEE
T ss_pred -------------------------------------------------------eEecccCCCCCCEEEEEEcCCCCEE
Confidence 1223345688999999999999888
Q ss_pred EEECCCcEEEEECCCCeeeeE-----eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEE
Q 005646 370 SASIDKTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVC 443 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~-----~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~ 443 (686)
+++.|++|+|||+.+++++.. ..|...|++++|+| ++++|++|+.|++|++||+++++.+ .+..|...|++++
T Consensus 110 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 110 VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 899999999999998875432 23899999999999 9999999999999999999999877 4556889999999
Q ss_pred EccCCC-EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc----
Q 005646 444 YRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---- 518 (686)
Q Consensus 444 ~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---- 518 (686)
|+|++. ++++++.||.|++||+.+++..... ....+...+++++|+|+++.+|++++.|+.|++||..+
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~ 262 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRI------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA 262 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCBCBC------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC
T ss_pred EccCCCceeeeeccCCceEEEECCCCceeeee------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe
Confidence 999885 7889999999999999887654321 12345577999999997777888899999999998642
Q ss_pred -----------ceeEcCCC-CEEEEEeCCCcEEEEeCCCCC
Q 005646 519 -----------VIGKYKDG-KHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 -----------~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++|+|++ ++|++|+.|++|+|||+.+++
T Consensus 263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 36788876 578899999999999987654
No 23
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-36 Score=324.13 Aligned_cols=283 Identities=21% Similarity=0.333 Sum_probs=232.5
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+. +|+++++++++|+.|++|+||+...... ...+.+|...|.+++|+|+|++||+|+.|+.|+||+
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 4666664 5667888999999999999999765432 356788999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+...... .......+.+|.+.|.
T Consensus 137 ~~~~~~~~~-------------------------------------------------------~~~~~~~~~gh~~~v~ 161 (380)
T 3iz6_a 137 LSSQADRDG-------------------------------------------------------NMPVSRVLTGHKGYAS 161 (380)
T ss_dssp CCCCSSCCC-------------------------------------------------------SSTTCCBCCCCSSCCC
T ss_pred CCCCccccC-------------------------------------------------------CccceeeccCCCcceE
Confidence 875431000 0013345678999999
Q ss_pred EEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEe------eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-CcE
Q 005646 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHV 429 (686)
Q Consensus 359 ~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~------~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~ 429 (686)
++.|+|++ .|++|+.|++|++||+.+++++..+ .|...|.+++|+|.++++|++|+.|++|++||++. .+.
T Consensus 162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241 (380)
T ss_dssp CCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC
T ss_pred EEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 99999975 8999999999999999999998877 28899999999887889999999999999999984 343
Q ss_pred -EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 430 -VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 430 -~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
..+.+|...|++++|+|+|++|++|+.||+|++||+.+++........ ......+...|++++|+| ++.+|++++.|
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d 319 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE-PDRNDNELPIVTSVAFSI-SGRLLFAGYSN 319 (380)
T ss_dssp CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC-CSSSCCSSCSCSEEEECS-SSSEEEEECTT
T ss_pred eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc-ccccccccCceEEEEECC-CCCEEEEEECC
Confidence 356679999999999999999999999999999999988754322110 011122334589999999 88999999999
Q ss_pred CcEEEEeCC-------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 509 SQVRILQGP-------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~-------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.|++||.. +.++++|+|++|+||+.|++|+||++...+
T Consensus 320 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 320 GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999952 347899999999999999999999998754
No 24
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.1e-35 Score=311.80 Aligned_cols=232 Identities=14% Similarity=0.307 Sum_probs=200.1
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
.++.+|.+.|++++|+|++++||||+.||+|+|||..+++.
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~--------------------------------------- 98 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK--------------------------------------- 98 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------------------
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc---------------------------------------
Confidence 56889999999999999999999999999999999876542
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC------eeeeEee-CCC
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND------HCLRVFP-HSN 395 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~------~~~~~~~-h~~ 395 (686)
.+.+..|...|.+++|+|++ +|++++.|+++++|++... .....+. |..
T Consensus 99 -----------------------~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~ 155 (354)
T 2pbi_B 99 -----------------------EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN 155 (354)
T ss_dssp -----------------------EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSS
T ss_pred -----------------------ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCC
Confidence 33445688899999999999 9999999999999998654 2233344 999
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEcc--CCCEEEEEecCCcEEEEeCCCCeeee
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~ 472 (686)
.|.+++|+| ++..|++++.|++|++||+.+++.+ .+..|...|.+++|+| +|++|++|+.||.|++||+.+++...
T Consensus 156 ~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 156 YLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred cEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 999999999 8999999999999999999999877 4557889999999988 57899999999999999999876543
Q ss_pred eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----------------ceeEcCCCCEEEEEeCC
Q 005646 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-----------------VIGKYKDGKHIVSAGED 535 (686)
Q Consensus 473 ~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-----------------~~~~~~dg~~l~sgs~D 535 (686)
. ...|...|++++|+| ++..|++++.|+.|++||..+ .++|+|+|++|++|+.|
T Consensus 235 ~--------~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d 305 (354)
T 2pbi_B 235 A--------FETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND 305 (354)
T ss_dssp E--------ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred E--------ecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC
Confidence 1 245778899999999 788999999999999999642 36688899999999999
Q ss_pred CcEEEEeCCCCC
Q 005646 536 SNVYMWNCIGHE 547 (686)
Q Consensus 536 g~V~iWd~~~~~ 547 (686)
++|+|||+.+++
T Consensus 306 ~~i~vwd~~~~~ 317 (354)
T 2pbi_B 306 YTINVWDVLKGS 317 (354)
T ss_dssp SCEEEEETTTCS
T ss_pred CcEEEEECCCCc
Confidence 999999987654
No 25
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.3e-35 Score=310.95 Aligned_cols=269 Identities=16% Similarity=0.340 Sum_probs=223.4
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+++++|.+.|++++|+|++++|+||+.||+|+|||+.+++
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~--------------------------------------- 88 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN--------------------------------------- 88 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC---------------------------------------
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC---------------------------------------
Confidence 35688999999999999999999999999999999987765
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe----eeeEee-CCCC
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH----CLRVFP-HSNY 396 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~----~~~~~~-h~~~ 396 (686)
.+..+..|...|.+++|+|++ +|++++.|+.|++|++.+.. ....+. |.+.
T Consensus 89 -----------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~ 145 (340)
T 1got_B 89 -----------------------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY 145 (340)
T ss_dssp -----------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSC
T ss_pred -----------------------cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCcc
Confidence 234556788999999999999 99999999999999998753 444444 9999
Q ss_pred eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
|.++.|+| ++ .+++++.|++|++||+.+++.+ .+..|...|++++|+|+++++++|+.||.|++||+.++.....
T Consensus 146 v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~-- 221 (340)
T 1got_B 146 LSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-- 221 (340)
T ss_dssp EEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE--
T ss_pred EEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE--
Confidence 99999998 54 5899999999999999999877 4556889999999999999999999999999999988765431
Q ss_pred EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----------------ceeEcCCCCEEEEEeCCCcE
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-----------------VIGKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-----------------~~~~~~dg~~l~sgs~Dg~V 538 (686)
...|...|++++|+| ++..|++++.|+.|++||..+ .++|+|+|++|++|+.||.|
T Consensus 222 ------~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i 294 (340)
T 1got_B 222 ------FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294 (340)
T ss_dssp ------ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ------EcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeE
Confidence 345778899999999 889999999999999999642 36788999999999999999
Q ss_pred EEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCC
Q 005646 539 YMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPK 618 (686)
Q Consensus 539 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~ 618 (686)
++||+.+++ .+..+..+. .....++|+|| +..+++++.|+
T Consensus 295 ~vwd~~~~~--------~~~~~~~h~----------------------------~~v~~~~~s~d----g~~l~s~s~D~ 334 (340)
T 1got_B 295 NVWDALKAD--------RAGVLAGHD----------------------------NRVSCLGVTDD----GMAVATGSWDS 334 (340)
T ss_dssp EEEETTTCC--------EEEEEECCS----------------------------SCEEEEEECTT----SSCEEEEETTS
T ss_pred EEEEcccCc--------EeeEeecCC----------------------------CcEEEEEEcCC----CCEEEEEcCCc
Confidence 999987754 111121111 11234567888 55667888999
Q ss_pred CCCCCC
Q 005646 619 GCATWP 624 (686)
Q Consensus 619 ~~~~W~ 624 (686)
.+++|+
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999996
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-35 Score=315.67 Aligned_cols=273 Identities=19% Similarity=0.268 Sum_probs=216.3
Q ss_pred cceeeecCCCccceeec------cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 205 EGERVRLNEEDAMFCSK------VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~------d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
...+|+++|.+|++++. |+.|++|+........ .......+|...|++++|+|++. +++++.||+|+|||
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~---~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd 121 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE---SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWE 121 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce---eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEee
Confidence 34678899999999997 7789999765433211 11233557999999999999985 55678899999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++.... ......+|...|.
T Consensus 122 ~~~~~~~~~----------------------------------------------------------~~~~~~~h~~~V~ 143 (357)
T 4g56_B 122 ILEKESLLV----------------------------------------------------------NKFAKYEHDDIVK 143 (357)
T ss_dssp -------CC----------------------------------------------------------CCEEECCCSSCEE
T ss_pred ccccceeEE----------------------------------------------------------EeeccCCCCCCEE
Confidence 987753211 1233457999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE---e
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW---V 433 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~---~ 433 (686)
+++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+|....+|++++.||+|++||+++++.... .
T Consensus 144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 99999999 99999999999999999999999988 9999999999994446899999999999999999876533 3
Q ss_pred ccCCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 434 DIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 434 ~~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
.+...+++++|+|+ +.+|++|+.|+.|++||+.+++.... ...|...|++++|+|++..+|++++.|++|+
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~--------~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT--------SAVHSQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE--------ECCCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE--------EeccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 45678999999997 56888999999999999988765431 2456688999999996667899999999999
Q ss_pred EEeCCc--------------ceeEcC-CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 513 ILQGPN--------------VIGKYK-DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 513 iwd~~~--------------~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|||..+ .++|+| ++++|+||+.||+|++|++....
T Consensus 296 iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 296 VLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999653 478898 89999999999999999997644
No 27
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-36 Score=354.91 Aligned_cols=198 Identities=12% Similarity=0.155 Sum_probs=162.8
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .+|++++.++|+|+.|+.|+||+...... .....|..+|++++|+| |++|++++.|++|+|||
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~--------~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV--------VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLS 85 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE--------EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE--------EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEE
Confidence 344444 56778888999999999999998654321 11224788999999999 88999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++.+ ..+. |...|+
T Consensus 86 ~~~~~~~--------------------------------------------------------------~~~~-~~~~V~ 102 (902)
T 2oaj_A 86 LYSQKVL--------------------------------------------------------------TTVF-VPGKIT 102 (902)
T ss_dssp TTTCSEE--------------------------------------------------------------EEEE-CSSCEE
T ss_pred CCCCcEE--------------------------------------------------------------EEEc-CCCCEE
Confidence 9876532 2222 567899
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeee-----------eEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCL-----------RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~-----------~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+++|+|++ +|++|+.||+|++||+.++++. ..+. |.+.|++++|+|.+..+|++|+.||.| +||++
T Consensus 103 ~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 103 SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC
Confidence 99999999 9999999999999999998764 1122 889999999999446799999999999 99999
Q ss_pred CCcEEEEecc-------------------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 426 SCHVVDWVDI-------------------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 426 ~~~~~~~~~~-------------------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
+++.+..... ...|++++|+|+|++|++|+.||+|++||+.++++.
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 182 ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 9987754432 367999999999999999999999999999876653
No 28
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.3e-35 Score=314.60 Aligned_cols=252 Identities=20% Similarity=0.343 Sum_probs=203.2
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+|.+.|++++|+|||++||+|+ |+.++||++.+++.+..+..+..... .+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-----------------~~------------ 111 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-----------------DP------------ 111 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccc-----------------cc------------
Confidence 6999999999999999999986 78999999998886665543211000 00
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV 405 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~ 405 (686)
. .........+...|.+++|+|++ +|++|+.|++|+|||+.+++++..+. |...|++++|+|
T Consensus 112 ----------~-----~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p- 175 (393)
T 1erj_A 112 ----------E-----NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP- 175 (393)
T ss_dssp ------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-
T ss_pred ----------c-----cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-
Confidence 0 00001112355579999999999 99999999999999999999998887 999999999999
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccC
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 484 (686)
++++|++|+.|++|++||+++++......+...+.+++|+| +|++|++|+.||.|++||+.++.+....... ......
T Consensus 176 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~-~~~~~~ 254 (393)
T 1erj_A 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-NESGTG 254 (393)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------CC
T ss_pred CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc-ccCCCC
Confidence 99999999999999999999999888778888999999999 9999999999999999999887654322111 111246
Q ss_pred CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------------------ceeEcCCCCEEEEEeCCCc
Q 005646 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------------------VIGKYKDGKHIVSAGEDSN 537 (686)
Q Consensus 485 ~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------------------~~~~~~dg~~l~sgs~Dg~ 537 (686)
|...|++++|+| ++..|++++.|+.|++||..+ .+++++++++|++|+.|+.
T Consensus 255 h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~ 333 (393)
T 1erj_A 255 HKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333 (393)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence 788999999999 789999999999999998642 2567789999999999999
Q ss_pred EEEEeCCCCC
Q 005646 538 VYMWNCIGHE 547 (686)
Q Consensus 538 V~iWd~~~~~ 547 (686)
|++||+.+++
T Consensus 334 v~iwd~~~~~ 343 (393)
T 1erj_A 334 VLFWDKKSGN 343 (393)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCe
Confidence 9999988754
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-34 Score=300.97 Aligned_cols=233 Identities=30% Similarity=0.562 Sum_probs=198.5
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+.+|.+.|++++|+|++++|++|+.||.|++|++.+++
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------------------- 56 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------------------------- 56 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------------------------------
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----------------------------------------
Confidence 4678999999999999999999999999999999987654
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++
T Consensus 57 ----------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 114 (312)
T 4ery_A 57 ----------------------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 114 (312)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred ----------------------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 234556799999999999999 99999999999999999999998887 999999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 480 (686)
|+| ++++|++|+.||+|++||+++++.+ .+..|...|++++|+|++++|++++.||.|++||+.+++....
T Consensus 115 ~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~------- 186 (312)
T 4ery_A 115 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------- 186 (312)
T ss_dssp ECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE-------
Confidence 999 9999999999999999999998876 4456788999999999999999999999999999988764321
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce-----------------eE-cCCCCEEEEEeCCCcEEEEe
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI-----------------GK-YKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~-----------------~~-~~dg~~l~sgs~Dg~V~iWd 542 (686)
....+...+..++|+| ++.+|++++.|+.|++||..+.. .+ .+++++|++|+.||.|++||
T Consensus 187 ~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd 265 (312)
T 4ery_A 187 LIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265 (312)
T ss_dssp ECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEE
T ss_pred EeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEE
Confidence 1233456799999999 77888888888888888865321 11 24677888888888888888
Q ss_pred CCCCC
Q 005646 543 CIGHE 547 (686)
Q Consensus 543 ~~~~~ 547 (686)
+.+++
T Consensus 266 ~~~~~ 270 (312)
T 4ery_A 266 LQTKE 270 (312)
T ss_dssp TTTCC
T ss_pred CCCch
Confidence 77643
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.7e-36 Score=320.09 Aligned_cols=235 Identities=17% Similarity=0.380 Sum_probs=200.8
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+++++|.+.|++++|+|++++|+||+.||+|+|||+.+++
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~--------------------------------------- 99 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ--------------------------------------- 99 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---------------------------------------
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------------------
Confidence 46788999999999999999999999999999999998765
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe-------eeeEee-C
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-------CLRVFP-H 393 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~-------~~~~~~-h 393 (686)
....+.+|...|.+++|+|++ +|++++.|++|++||+.+.. ....+. |
T Consensus 100 -----------------------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh 156 (380)
T 3iz6_a 100 -----------------------KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGH 156 (380)
T ss_dssp -----------------------EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCC
T ss_pred -----------------------cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCC
Confidence 234556799999999999999 99999999999999997532 233344 9
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe------ccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCC
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV------DIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~------~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~ 466 (686)
.+.|.+++|+|.++..|++|+.|++|++||+.+++.+... .|...|.+++|+| ++++|++|+.||+|++||++
T Consensus 157 ~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~ 236 (380)
T 3iz6_a 157 KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236 (380)
T ss_dssp SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETT
T ss_pred CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECC
Confidence 9999999999955678999999999999999999877544 5778899999987 88999999999999999997
Q ss_pred CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC----------------------cceeEcC
Q 005646 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----------------------NVIGKYK 524 (686)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~----------------------~~~~~~~ 524 (686)
...... .....|...|++++|+| ++..|++++.|++|++||.. +.++|+|
T Consensus 237 ~~~~~~-------~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 237 ITSRAV-------RTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp TTCCCC-------EEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred CCCcce-------EEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 432111 11345778999999999 88999999999999999964 2467889
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 525 DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 525 dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|++|++|+.||.|+|||+..++
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTCC
T ss_pred CCCEEEEEECCCCEEEEECCCCc
Confidence 99999999999999999987654
No 31
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.1e-35 Score=310.29 Aligned_cols=302 Identities=22% Similarity=0.350 Sum_probs=220.9
Q ss_pred CceecccCCceEEEEE-----ee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccc
Q 005646 243 GQEIQAHDGSILTMKF-----SP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKE 316 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~f-----sp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (686)
.+.+.+|.+.|++++| ++ ++++|+||+.|++|+|||+.+.+.....
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~---------------------------- 65 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF---------------------------- 65 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS----------------------------
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc----------------------------
Confidence 3568899999999999 76 8999999999999999998764311000
Q ss_pred cceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CC
Q 005646 317 KISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HS 394 (686)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~ 394 (686)
..+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |.
T Consensus 66 ---------------------------~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~ 118 (343)
T 2xzm_R 66 ---------------------------GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ 118 (343)
T ss_dssp ---------------------------EEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCC
T ss_pred ---------------------------ccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 12456678999999999999999 99999999999999999999998887 99
Q ss_pred CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe---ccCCcEEEEEEccCC----------CEEEEEecCCcEE
Q 005646 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDG----------QGGIVGSMMGDCR 461 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V~~v~~spdg----------~~l~~gs~dg~i~ 461 (686)
..|++++|+| ++++|++|+.|++|++||+......... .|...|.+++|+|++ .+|++++.||.|+
T Consensus 119 ~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 197 (343)
T 2xzm_R 119 SEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK 197 (343)
T ss_dssp SCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred CcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence 9999999999 9999999999999999999865444433 577889999999987 7899999999999
Q ss_pred EEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEE
Q 005646 462 FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 462 iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
+||... .... ....|...|++++|+| +|++|++|+.||.|+||
T Consensus 198 iwd~~~-~~~~--------~~~~h~~~v~~~~~s~----------------------------~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 198 VWNTNF-QIRY--------TFKAHESNVNHLSISP----------------------------NGKYIATGGKDKKLLIW 240 (343)
T ss_dssp EEETTT-EEEE--------EEECCSSCEEEEEECT----------------------------TSSEEEEEETTCEEEEE
T ss_pred EEcCCC-ceeE--------EEcCccccceEEEECC----------------------------CCCEEEEEcCCCeEEEE
Confidence 999542 2211 1345678899999999 89999999999999999
Q ss_pred eCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCC
Q 005646 542 NCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCA 621 (686)
Q Consensus 542 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~ 621 (686)
|+...... ...+.. .+....++|+|++. +++.+.+..++
T Consensus 241 d~~~~~~~-------~~~~~~-----------------------------~~~v~~v~~sp~~~-----~la~~~d~~v~ 279 (343)
T 2xzm_R 241 DILNLTYP-------QREFDA-----------------------------GSTINQIAFNPKLQ-----WVAVGTDQGVK 279 (343)
T ss_dssp ESSCCSSC-------SEEEEC-----------------------------SSCEEEEEECSSSC-----EEEEEESSCEE
T ss_pred ECCCCccc-------ceeecC-----------------------------CCcEEEEEECCCCC-----EEEEECCCCEE
Confidence 99543311 111100 11233456777732 23345677888
Q ss_pred CCCCCcCCCcc--ccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 622 TWPEEKLPALS--QLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 622 ~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
+|+..+..... .+...+.......+-....+.++ ..+++|..|++|+.||+||+|..
T Consensus 280 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 280 IFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL-AWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp EEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE-EECSSSCCEEEEETTSEEEEEEE
T ss_pred EEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE-EECCCCCeEEEecCCceEEEEEE
Confidence 89865433211 11000000000000001112333 34566999999999999999974
No 32
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-34 Score=311.20 Aligned_cols=281 Identities=20% Similarity=0.340 Sum_probs=221.2
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccC------------ceecccCCceEEEEEeeCCCEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKG------------QEIQAHDGSILTMKFSPDGQYLA 266 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~------------~~l~~H~~~I~~l~fspdg~~La 266 (686)
+|...+ .+|+++++++++|+ ++.++||++....... .+... .....+...|++++|+|+|++||
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA-RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE-EECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE-EecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 344444 56788888998876 7899999986543211 10000 00112334599999999999999
Q ss_pred EEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCC
Q 005646 267 SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346 (686)
Q Consensus 267 sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (686)
+|+.|++|+|||+.+++ .
T Consensus 140 s~~~d~~i~iwd~~~~~--------------------------------------------------------------~ 157 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRK--------------------------------------------------------------I 157 (393)
T ss_dssp EEETTSCEEEEETTTTE--------------------------------------------------------------E
T ss_pred EEcCCCeEEEEECCCCc--------------------------------------------------------------E
Confidence 99999999999998765 3
Q ss_pred eEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 347 ~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+..+.+|...|.+++|+|++ +|++++.|++|++||+.++++...+.+...+++++|+|.++++|++|+.||+|++||++
T Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~ 237 (393)
T 1erj_A 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237 (393)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 45567899999999999999 99999999999999999999999999999999999999788999999999999999999
Q ss_pred CCcEEEEe--------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee----EEeeccccCCCCCeEEEE
Q 005646 426 SCHVVDWV--------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE----ICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 426 ~~~~~~~~--------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~I~~l~ 493 (686)
++..+... .|...|++++|+|+|++|++|+.||.|++||+.+........ .........|...|.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 317 (393)
T 1erj_A 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317 (393)
T ss_dssp TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEE
Confidence 98876443 578899999999999999999999999999997643321100 001112345778899999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCcc---------------eeEc------CCCCEEEEEeCCCcEEEEeCCCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPNV---------------IGKY------KDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~~---------------~~~~------~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
|+| ++.+|++++.|+.|++||..+. +++. |++++|+||+.||+|+||++...
T Consensus 318 ~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 318 TTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999 7889999999999999996532 3444 47899999999999999998653
No 33
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.5e-34 Score=351.86 Aligned_cols=433 Identities=17% Similarity=0.185 Sum_probs=305.5
Q ss_pred cccCccee--eecC--CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 201 DKQGEGER--VRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~~--~s~~--~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
.|...+.+ |+++ +..+++|+.|+.|++|++..... ...+.+|.+.|++++|+|++++|++++.||+|++
T Consensus 697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-------~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-------RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-------EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-------hheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 34445544 4443 34688999999999999876432 3457789999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe-ccCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSG 355 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~ 355 (686)
||+.+++....+...................+..+.+.+++...+... ...+.+|+.... ..+..+ .+|..
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----~~~v~~~d~~~~----~~~~~~~~~~~~ 841 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----KNKVLLFDIHTS----GLLAEIHTGHHS 841 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----TTEEEEEETTTC----CEEEEEECSSSS
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----CCcEEEEEecCC----CceeEEcCCCCC
Confidence 999999877766544321111111111122333444555544443332 233444443321 223333 48999
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-------
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS------- 426 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~------- 426 (686)
.|.+++|+|++ ++++++.|++|++||+.++.++..+. |...|++++|+| ++++|++++.||+|++||+.+
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeee
Confidence 99999999999 99999999999999999999998887 999999999999 999999999999999998542
Q ss_pred ------------------------------------------------------------------------CcEE-EEe
Q 005646 427 ------------------------------------------------------------------------CHVV-DWV 433 (686)
Q Consensus 427 ------------------------------------------------------------------------~~~~-~~~ 433 (686)
++.+ ...
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 1111 122
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
.|...|++++|+|+|+++++++.||.|++||+.++.... ...|...|.++.|+| + ..+++++.|+.|++
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~---------~~~~~~~v~~~~~~~-~-~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF---------LQAHQETVKDFRLLQ-D-SRLLSWSFDGTVKV 1069 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC---------CBCCSSCEEEEEECS-S-SEEEEEESSSEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE---------EecCCCcEEEEEEcC-C-CcEEEEECCCcEEE
Confidence 466778999999999999999999999999998876542 345778899999999 3 57889999999999
Q ss_pred EeCC---------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCcccc--ccccccccccC-C-cEEEecCC
Q 005646 514 LQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQA--KTIRSLERFTT-N-ASIAIPWC 574 (686)
Q Consensus 514 wd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~--~~~~~~~~~~~-~-~~v~~s~~ 574 (686)
||.. ..++++|++++|++++.||+|++||+.++........ ..+..+ .|.+ . ..+..+.+
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~-~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS-AFSLDGILLATGDDN 1148 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEE-EECSSSSEEEEEETT
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEE-EECCCCCEEEEEeCC
Confidence 9964 3478899999999999999999999988763322221 112222 2222 1 22233344
Q ss_pred C-CcCCCCCCCCccccc---------CCC--CCcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccch
Q 005646 575 G-LKCGNAEKEPQLHVS---------DDD--SPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHK 642 (686)
Q Consensus 575 g-~~~~~~~~g~~l~~~---------~~~--~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~ 642 (686)
| ..+|+..++..+..+ ..| ....++|+||+ ..+++.+ +.+.+|+..+......+... .
T Consensus 1149 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg----~~l~s~~--g~v~vwd~~~g~~~~~~~~~---~- 1218 (1249)
T 3sfz_A 1149 GEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDS----KTLVSAG--GYLKWWNVATGDSSQTFYTN---G- 1218 (1249)
T ss_dssp SCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTS----SCEEEES--SSEEEBCSSSCBCCCCCCCS---S-
T ss_pred CEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCC----CEEEECC--CeEEEEECCCCceeeeeecc---C-
Confidence 4 378999999888765 223 35567899994 4444443 78999997665433222100 0
Q ss_pred hhHHhhhcccccCccCCCCceEEEEecCCCeEeEEee
Q 005646 643 SQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~ 679 (686)
....+. .++++|..|+||+.||.|++|+.
T Consensus 1219 -------~~i~~~-~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1219 -------TNLKKI-HVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp -------CCCCCC-EECSSSCCEEEECTTCCEEEECC
T ss_pred -------CcccEE-EECCCCCEEEEecCCcEEEEEee
Confidence 011222 34556999999999999999974
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=305.95 Aligned_cols=241 Identities=17% Similarity=0.169 Sum_probs=201.7
Q ss_pred cCccee--eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee
Q 005646 203 QGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 203 ~~~~~~--~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~ 280 (686)
+..+.+ |+++ +.+++|+.||.|+|||+........ ....+.+|.+.|++++|+|+|++|++|+.|++|+|||+.
T Consensus 82 ~~~v~~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~---~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 82 EAGVADLTWVGE-RGILVASDSGAVELWELDENETLIV---SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp SSCEEEEEEETT-TEEEEEETTSEEEEEEECTTSSCEE---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEEeCC-CeEEEEECCCEEEEEeccCCCceeE---eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 334444 4444 4788999999999999876533211 113456899999999999999999999999999999998
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
+++ ++..+.+|...|.++
T Consensus 158 ~~~--------------------------------------------------------------~~~~~~~h~~~V~~~ 175 (344)
T 4gqb_B 158 QQV--------------------------------------------------------------VLSSYRAHAAQVTCV 175 (344)
T ss_dssp TTE--------------------------------------------------------------EEEEECCCSSCEEEE
T ss_pred CCc--------------------------------------------------------------EEEEEcCcCCceEEE
Confidence 875 355677899999999
Q ss_pred EeeCCC--EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEec
Q 005646 361 SWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVD 434 (686)
Q Consensus 361 ~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~ 434 (686)
+|++++ +|++++.|++|++||+++++++..+. |...+++++|+|.++++|++|+.||+|+|||+++++++ .+..
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC
T ss_pred EecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC
Confidence 999987 78999999999999999999888775 66789999999977789999999999999999998876 5667
Q ss_pred cCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 435 IRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 435 ~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
|...|++++|+|+| ++|++|+.||+|+|||+.++++.. ..+|...|++++|+|++..+|++++.|++|++
T Consensus 256 h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~---------~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 256 HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR---------SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE---------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE---------EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 89999999999998 579999999999999998876431 34678899999999966677889999999999
Q ss_pred EeCCc
Q 005646 514 LQGPN 518 (686)
Q Consensus 514 wd~~~ 518 (686)
|+..+
T Consensus 327 w~v~~ 331 (344)
T 4gqb_B 327 HVVPT 331 (344)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99865
No 35
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.1e-34 Score=295.68 Aligned_cols=266 Identities=23% Similarity=0.358 Sum_probs=224.1
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .+|+++++++++++.|+.|+||+...... ...+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-------EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-------chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 455555 45667788999999999999998765432 245778999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++ .+..+.+|...|.
T Consensus 94 ~~~~~--------------------------------------------------------------~~~~~~~~~~~v~ 111 (312)
T 4ery_A 94 VSSGK--------------------------------------------------------------CLKTLKGHSNYVF 111 (312)
T ss_dssp TTTCC--------------------------------------------------------------EEEEEECCSSCEE
T ss_pred CCCCc--------------------------------------------------------------EEEEEcCCCCCEE
Confidence 97764 3455678999999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--c
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--D 434 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~ 434 (686)
+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++|+.||.|++||+++++.+... .
T Consensus 112 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 190 (312)
T 4ery_A 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190 (312)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEecc
Confidence 99999999 99999999999999999999998887 899999999999 9999999999999999999998877543 4
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC--eEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR--ITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
+...+..++|+|++++|++++.||.|++||+.+++..... ..|... .....+++.++.+|++++.|+.|+
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 262 (312)
T 4ery_A 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--------TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262 (312)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE--------CSSCCSSSCCCEEEECSSSCEEEECCTTSCEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--------EecCCceEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 5567999999999999999999999999999988754321 112222 223456655788999999999999
Q ss_pred EEeCCc---------------ceeEcCCCCEEEEEe--CCCcEEEEeCC
Q 005646 513 ILQGPN---------------VIGKYKDGKHIVSAG--EDSNVYMWNCI 544 (686)
Q Consensus 513 iwd~~~---------------~~~~~~dg~~l~sgs--~Dg~V~iWd~~ 544 (686)
+||..+ .++++|++++|++++ .|++|++|+.+
T Consensus 263 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999653 367889999999997 69999999975
No 36
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-33 Score=325.61 Aligned_cols=271 Identities=20% Similarity=0.379 Sum_probs=222.5
Q ss_pred eeecccCcceeeecC---CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcE
Q 005646 198 CVVDKQGEGERVRLN---EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (686)
Q Consensus 198 ~~~~~~~~~~~~s~~---~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (686)
....|...+.++... ++.+++|+.|+.|+||++........ .....+.+|...|++++|+|+|++|+||+.||+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--cccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 344677777776643 35789999999999999876433211 1234688999999999999999999999999999
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
+|||+.++. .+..+.+|.
T Consensus 455 ~vwd~~~~~--------------------------------------------------------------~~~~~~~h~ 472 (694)
T 3dm0_A 455 RLWDLAAGV--------------------------------------------------------------STRRFVGHT 472 (694)
T ss_dssp EEEETTTTE--------------------------------------------------------------EEEEEECCS
T ss_pred EEEECCCCc--------------------------------------------------------------ceeEEeCCC
Confidence 999998765 234567899
Q ss_pred CCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe----eCCCCeEEEEEeecCC--CEEEEEEcCCcEEEEecCCC
Q 005646 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDD--NYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~----~h~~~V~~v~fsp~~~--~~l~sgs~Dg~V~iwd~~~~ 427 (686)
..|.+++|+|++ +|++++.|++|++||+......... .|...|++++|+| ++ .+|++|+.|++|++||++++
T Consensus 473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~ 551 (694)
T 3dm0_A 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNC 551 (694)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTC
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCC
Confidence 999999999999 9999999999999998765444332 2888999999999 54 68999999999999999998
Q ss_pred cEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 428 HVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 428 ~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
++. .+..|...|++++|+|+|++|++|+.||.|++||+.+++..... .+...|.+++|+| ++.++++ +
T Consensus 552 ~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~sp-~~~~l~~-~ 620 (694)
T 3dm0_A 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---------EANSVIHALCFSP-NRYWLCA-A 620 (694)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC---------BCSSCEEEEEECS-SSSEEEE-E
T ss_pred cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe---------cCCCcEEEEEEcC-CCcEEEE-E
Confidence 877 45578899999999999999999999999999999988754321 1335699999999 5555554 5
Q ss_pred CCCcEEEEeCCc----------------------------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 507 ADSQVRILQGPN----------------------------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 507 ~D~~I~iwd~~~----------------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.++.|++||..+ .++|+|+|++|++|+.||.|+||++.
T Consensus 621 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 567799999642 35689999999999999999999985
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.5e-34 Score=309.93 Aligned_cols=264 Identities=14% Similarity=0.134 Sum_probs=219.2
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+|+++++++++++.++.|++|+...... ...+..| ..+....|+|++++||+|+.||.|++||+.+++
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-- 130 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDG-------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-- 130 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEET-------TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccce-------eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--
Confidence 467899999999999999999999865432 2334445 445555789999999999999999999987654
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
....+.+|...|.+++|+|+
T Consensus 131 ------------------------------------------------------------~~~~~~~h~~~v~~~~~~~~ 150 (420)
T 3vl1_A 131 ------------------------------------------------------------QREIDQAHVSEITKLKFFPS 150 (420)
T ss_dssp ------------------------------------------------------------EEEETTSSSSCEEEEEECTT
T ss_pred ------------------------------------------------------------eeeecccccCccEEEEECCC
Confidence 23444679999999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec----cCCcE
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD----IRQIV 439 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~----~~~~V 439 (686)
+ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++++.||+|++||+++++.+.... +...+
T Consensus 151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 9 99999999999999999999998887 999999999999 99999999999999999999998775553 33344
Q ss_pred EE---------------------EEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC
Q 005646 440 TA---------------------VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 440 ~~---------------------v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~ 498 (686)
.+ ++|+|+|++|++|+.||.|++||+.+++.... ....|...|++++|+|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ-------LPSKFTCSCNSLTVDGNN 302 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE-------ECCTTSSCEEEEEECSSC
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE-------cccccCCCceeEEEeCCC
Confidence 44 45578999999999999999999988764332 133567889999999944
Q ss_pred CCeEEEEeCCCcEEEEeCCcc----------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 499 SSKVMVSCADSQVRILQGPNV----------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~~~----------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+|++++.|+.|++||..+. ..+++++++|++++.|+.|++|++..+.
T Consensus 303 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 303 ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTT
T ss_pred CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCC
Confidence 449999999999999997642 1245589999999999999999998854
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-34 Score=306.15 Aligned_cols=344 Identities=13% Similarity=0.116 Sum_probs=249.6
Q ss_pred cceeeecCCC-cccee----------eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCc
Q 005646 205 EGERVRLNEE-DAMFC----------SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV 273 (686)
Q Consensus 205 ~~~~~s~~~~-~l~~g----------~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 273 (686)
...+|++++. .++++ +.|+.|+||++...... .... ...|...|++++|+|++++|++|+.||.
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----KPIA-SLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----SCSC-CCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----cEEE-EEecCCceEEEEECCCCCeEEEEccCCe
Confidence 3456777776 77888 88999999998765421 0111 2358999999999999999999999999
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
|++||+.+.... .+.+..+.+|
T Consensus 91 v~vw~~~~~~~~----------------------------------------------------------~~~~~~~~~h 112 (416)
T 2pm9_A 91 LELYSTNEANNA----------------------------------------------------------INSMARFSNH 112 (416)
T ss_dssp EEEECCSSTTSC----------------------------------------------------------CCEEEECCCS
T ss_pred EEEeeccccccc----------------------------------------------------------ccchhhccCC
Confidence 999999762100 0245666789
Q ss_pred CCCeeEEEeeCC-C-EEEEEECCCcEEEEECCCCe------eeeEe----eCCCCeEEEEEeecCCCEEEEEEcCCcEEE
Q 005646 354 SGEILDLSWSKN-N-YLLSASIDKTVRLWRVGNDH------CLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421 (686)
Q Consensus 354 ~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~------~~~~~----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~i 421 (686)
...|.+++|+|+ + +|++++.|++|++||+.+++ ....+ .|...|++++|+|..+.+|++++.||.|++
T Consensus 113 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 192 (416)
T 2pm9_A 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192 (416)
T ss_dssp SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEE
T ss_pred ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEE
Confidence 999999999998 5 99999999999999999886 33333 389999999999933899999999999999
Q ss_pred EecCCCcEEEEecc-------CCcEEEEEEccCC-CEEEEEecCC---cEEEEeCCCCeeeeeeeEEeecccc-CCCCCe
Q 005646 422 WAVLSCHVVDWVDI-------RQIVTAVCYRPDG-QGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKK-APCKRI 489 (686)
Q Consensus 422 wd~~~~~~~~~~~~-------~~~V~~v~~spdg-~~l~~gs~dg---~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~I 489 (686)
||+++++.+..... ...|++++|+|++ .++++++.|+ .|++||+.+..... .... .|...|
T Consensus 193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~-------~~~~~~~~~~v 265 (416)
T 2pm9_A 193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL-------QTLNQGHQKGI 265 (416)
T ss_dssp EETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS-------BCCCSCCSSCE
T ss_pred EECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc-------EEeecCccCce
Confidence 99999988755543 6789999999997 6899999998 99999998753211 1123 577889
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCC-CEEEEEeCCCcEEEEeCCCCCCCCccc
Q 005646 490 TGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDG-KHIVSAGEDSNVYMWNCIGHEEPAHDQ 553 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~~~~~~~~ 553 (686)
++++|+|.++.+|++++.|+.|++||..+ .++|+|++ ++|++++.||.|+||++.+........
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~ 345 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQ 345 (416)
T ss_dssp EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-
T ss_pred eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccc
Confidence 99999997889999999999999999642 47788998 899999999999999999876332211
Q ss_pred c---ccccccccccC-CcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCc
Q 005646 554 A---KTIRSLERFTT-NASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 627 (686)
Q Consensus 554 ~---~~~~~~~~~~~-~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~ 627 (686)
. ........+.. ...++ .+.......- ............++|+|| +..+.+++.|+.+++|+.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~s~d----g~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 346 ETETKQQESETDFWNNVSREE---SKEKPSVFHL--QAPTWYGEPSPAAHWAFG----GKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ------------------------CCSCCCSSCC--CCCSTTCCCSCCCEEETT----TEEECBCTTSSCBCCBCCCC
T ss_pred cccccccCCcccccccccccc---cccccccccc--cCCccccCCccceEEeeC----CeEEEEeCCCCeEEEEEecc
Confidence 1 00000001100 00000 0000000000 000011223346789999 55566788999999999654
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-34 Score=297.40 Aligned_cols=303 Identities=18% Similarity=0.193 Sum_probs=209.2
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+.+|.++|++++|+|+ +||||+.|++|+|||+.++..
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------------------------- 46 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------------------------- 46 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------------------------
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------------------------
Confidence 3568899999999999987 999999999999999976421
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEe-c-cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCC-------CeeeeEee
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEF-H-GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-------DHCLRVFP 392 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~-~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~-------~~~~~~~~ 392 (686)
+.+..+ . +|...|.+++|+|++ +|++++.|++|+|||+.. .+++..+.
T Consensus 47 ----------------------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 104 (330)
T 2hes_X 47 ----------------------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE 104 (330)
T ss_dssp ----------------------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC
T ss_pred ----------------------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc
Confidence 012223 2 399999999999999 999999999999999853 34566666
Q ss_pred -CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC----cEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 393 -HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 393 -h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~----~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
|...|++++|+| ++++|++|+.|++|++||++.. +++ .+..|...|++++|+|++++|++|+.|++|++||+.
T Consensus 105 ~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~ 183 (330)
T 2hes_X 105 GHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183 (330)
T ss_dssp ----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE
T ss_pred CCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 999999999999 9999999999999999999532 333 456788999999999999999999999999999987
Q ss_pred CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
++.... ......|...|.+++|+|+. ++.+|++|+.|++|+||++..+
T Consensus 184 ~~~~~~------~~~~~~h~~~v~~~~~~~~~--------------------------~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 184 DDDWEC------VAVLNGHEGTVWSSDFDKTE--------------------------GVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp TTEEEE------EEEECCCSSCEEEEEECCSS--------------------------SSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCeeE------EEEccCCCCcEEEEEecCCC--------------------------CeeEEEEEeCCCeEEEEEecCC
Confidence 653221 11234677899999999921 2678999999999999998764
Q ss_pred CCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCC
Q 005646 547 EEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 626 (686)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~ 626 (686)
.............+.. ........++|+|+ ..+++++.|+.+++|+..
T Consensus 232 ~~~~~~~~~~~~~~~~---------------------------~h~~~v~~v~~s~~-----~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 232 DEDDQQEWVCEAILPD---------------------------VHKRQVYNVAWGFN-----GLIASVGADGVLAVYEEV 279 (330)
T ss_dssp CTTSCEEEEEEEECCS---------------------------CCSSCEEEEEECTT-----SCEEEEETTSCEEEEEEE
T ss_pred CccccceeEEeeeccc---------------------------ccccceEEEEEcCC-----CEEEEEeCCCEEEEEEcC
Confidence 3111000011111100 01112334556654 256678899999999955
Q ss_pred cCCCccccccccccchhhHHhhhcccccCccCCC-CceEEEEecCCCeEeEEee
Q 005646 627 KLPALSQLSSASALHKSQYKFLKSSCLCTTSSHA-WGLVIVTAGWDGRIRSFLN 679 (686)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ivT~~~DG~Ir~w~~ 679 (686)
.... ... . .....+.. ....++++.+. ++.+|||||.||+||+|+.
T Consensus 280 ~~~~-~~~--~-~~~~~h~~---~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 280 DGEW-KVF--A-KRALCHGV---YEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp TTEE-EEE--E-EESCTTTT---SCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred CCce-EEE--e-cccccccc---ceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 3310 000 0 00001100 00112223332 5889999999999999975
No 40
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.4e-33 Score=289.50 Aligned_cols=236 Identities=19% Similarity=0.285 Sum_probs=198.5
Q ss_pred eecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
.+.+|.+.|++++|+|+|++||||+.|++|+|||+....
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~----------------------------------------- 42 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET----------------------------------------- 42 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----------------------------------------
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----------------------------------------
Confidence 467899999999999999999999999999999986432
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--C-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCeE
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVT 398 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V~ 398 (686)
.+++..+.+|.+.|.+++|+++ + +|++++.|++|+|||+.+++ ++..+. |...|+
T Consensus 43 -------------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~ 103 (297)
T 2pm7_B 43 -------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN 103 (297)
T ss_dssp -------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE
T ss_pred -------------------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee
Confidence 0245678899999999999863 5 99999999999999999874 445555 999999
Q ss_pred EEEEeecC--CCEEEEEEcCCcEEEEecCCCc---EEEEeccCCcEEEEEEccC-------------CCEEEEEecCCcE
Q 005646 399 CVHFNPVD--DNYFISGSIDGKVRIWAVLSCH---VVDWVDIRQIVTAVCYRPD-------------GQGGIVGSMMGDC 460 (686)
Q Consensus 399 ~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~~~~V~~v~~spd-------------g~~l~~gs~dg~i 460 (686)
+++|+| + +.+|++|+.|++|++||+++.. ......|...|++++|+|+ +++|++|+.|++|
T Consensus 104 ~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v 182 (297)
T 2pm7_B 104 SVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182 (297)
T ss_dssp EEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCE
T ss_pred EEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcE
Confidence 999999 5 7899999999999999998763 3456678899999999997 5799999999999
Q ss_pred EEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC--CCeEEEEeCCCcEEEEeCCc--------------------
Q 005646 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPN-------------------- 518 (686)
Q Consensus 461 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~--~~~l~~~s~D~~I~iwd~~~-------------------- 518 (686)
++||+.++..... .......|...|.+++|+|+. +.+|++++.|++|++||..+
T Consensus 183 ~lwd~~~~~~~~~----~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~ 258 (297)
T 2pm7_B 183 KIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 258 (297)
T ss_dssp EEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEE
T ss_pred EEEEEcCCCceEE----EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEE
Confidence 9999976542211 111234678899999999953 57999999999999998532
Q ss_pred ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 519 VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 519 ~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.++|+|+|++|++++.|+.|+||+...
T Consensus 259 ~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 259 RASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 256889999999999999999999864
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-32 Score=287.38 Aligned_cols=269 Identities=16% Similarity=0.249 Sum_probs=229.1
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .++++++..+++++ ++.|++|++....... ........+|...|++++|+|++++|++++.|+.|++||
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee--eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 344444 45667788888888 9999999987643211 111111237999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++. .....+.+|...|.
T Consensus 126 ~~~~~~------------------------------------------------------------~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 126 LAAPTP------------------------------------------------------------RIKAELTSSAPACY 145 (337)
T ss_dssp CCCC--------------------------------------------------------------EEEEEEECSSSCEE
T ss_pred CCCCCc------------------------------------------------------------ceeeecccCCCceE
Confidence 977541 12345567899999
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccC
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~ 436 (686)
+++|+|++ +|++++.|+.|++||+.+++.+..+. |...|++++|+| ++++|++++.||.|++||+++++.+....+.
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 224 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCC
Confidence 99999999 99999999999999999999998887 999999999999 9999999999999999999999998888899
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..+.+++|+|+++++++++.+|.|++||+.+.+... ...|...|++++|+| ++.+|++++.|+.|++|+.
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---------EcCCccceeEEEECC-CCCEEEEecCCCcEEEEEC
Confidence 999999999999999999999999999998875421 234668899999999 8899999999999999996
Q ss_pred Cc--------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 517 PN--------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 517 ~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.+ .++++|++++|++++.||.|++|++
T Consensus 295 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 295 PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 53 3678899999999999999999996
No 42
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-33 Score=301.98 Aligned_cols=267 Identities=15% Similarity=0.234 Sum_probs=215.5
Q ss_pred ceeeecCCC-ccceeeccceEEEEEc----CCccc-----ccccccc----CceecccCCceEEEEEeeCCCEEEEEeCC
Q 005646 206 GERVRLNEE-DAMFCSKVQRVKVYHC----KKRSK-----ELSALYK----GQEIQAHDGSILTMKFSPDGQYLASAGDD 271 (686)
Q Consensus 206 ~~~~s~~~~-~l~~g~~d~~v~vw~~----~~~~~-----~~~~~~~----~~~l~~H~~~I~~l~fspdg~~Lasgs~D 271 (686)
..+|++++. ++++++.|+.|+||++ ..... ....+.. .....+|.+.|++++|+|++++|++|+.|
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 129 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVEN 129 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCC
Confidence 356677788 9999999999999998 54431 1111100 01122378899999999999999999999
Q ss_pred CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec
Q 005646 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (686)
Q Consensus 272 g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (686)
|.|++|| .+++ .+..+.
T Consensus 130 g~i~i~~-~~~~--------------------------------------------------------------~~~~~~ 146 (425)
T 1r5m_A 130 GELRLWN-KTGA--------------------------------------------------------------LLNVLN 146 (425)
T ss_dssp SCEEEEE-TTSC--------------------------------------------------------------EEEEEC
T ss_pred CeEEEEe-CCCC--------------------------------------------------------------eeeecc
Confidence 9999999 3332 345567
Q ss_pred cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCC---------------eEEEEEeecCCCEEEEEE
Q 005646 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY---------------VTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~---------------V~~v~fsp~~~~~l~sgs 414 (686)
+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. +... +.+++|+| + ..+++++
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 224 (425)
T 1r5m_A 147 FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPG 224 (425)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-T-TEEEEEC
T ss_pred CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEc
Confidence 799999999999999 99999999999999999999998887 5555 99999998 5 6799999
Q ss_pred cCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 415 IDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 415 ~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
.||.|++||+.+++.+ .+..|...|++++|+|++++|++++.||.|++||+.+++.... ...|...|.+++
T Consensus 225 ~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~~i~~~~ 296 (425)
T 1r5m_A 225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC--------FYGHSQSIVSAS 296 (425)
T ss_dssp GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE--------ECCCSSCEEEEE
T ss_pred CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE--------ecCCCccEEEEE
Confidence 9999999999998766 4457889999999999999999999999999999987654321 234667899999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|+| ++ .+++++.|+.|++||..+ .++++|++++|++++.||.|+||++.++.
T Consensus 297 ~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 297 WVG-DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EET-TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred ECC-CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 999 55 999999999999999643 36788999999999999999999997654
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.1e-33 Score=288.51 Aligned_cols=265 Identities=14% Similarity=0.207 Sum_probs=218.3
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
...++++++..++++..++.+.+|....... .....+|...|++++|+|++++|++++ ||.|++||+.+++.
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDALIGPGIPRHAR-------QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSSSTTCCSEEE-------EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred eEEEECCCCCEEEeecCCCcEeccccCCccc-------cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 3467888999998888777666653322211 122347999999999999999999999 99999999977542
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe--ccCCCCeeEEEe
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF--HGHSGEILDLSW 362 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~l~~ 362 (686)
.. .+..+ .+|...|.+++|
T Consensus 85 ~~-----------------------------------------------------------~~~~~~~~~~~~~v~~~~~ 105 (337)
T 1gxr_A 85 KS-----------------------------------------------------------PVSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp CS-----------------------------------------------------------CSEEEECSCTTSBEEEEEE
T ss_pred ee-----------------------------------------------------------eeecccccCCCCcEEEEEE
Confidence 11 12222 368999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCC
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQ 437 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~ 437 (686)
+|++ +|++++.|+.|++||+.+++ ....+. |...|++++|+| ++++|++++.||.|++||+++++.+. +..|..
T Consensus 106 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~ 184 (337)
T 1gxr_A 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred cCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccC
Confidence 9999 99999999999999999887 444454 889999999999 99999999999999999999988774 445788
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.|++++|+|++++|++++.||.|++||+.+++..... .+...+.+++|+| ++..+++++.|+.|++||..
T Consensus 185 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---------DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---------ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee---------cCCCceEEEEECC-CCCEEEEEcCCCcEEEEECC
Confidence 9999999999999999999999999999988754321 2446799999999 78899999999999999965
Q ss_pred c--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 N--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 ~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+ .++++|++++|++++.||.|++|++.+++
T Consensus 255 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp SSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 3 36788899999999999999999988754
No 44
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-32 Score=287.54 Aligned_cols=297 Identities=17% Similarity=0.276 Sum_probs=224.8
Q ss_pred ecccCcceeeec--C-CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 005646 200 VDKQGEGERVRL--N-EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (686)
Q Consensus 200 ~~~~~~~~~~s~--~-~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~v 276 (686)
..|...+.++++ + ++++++|+.|++|+||++...... .....+.+++|...|++++|+|+|++|++|+.|+.|++
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC--SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 457777766554 4 467999999999999998765332 22234568899999999999999999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|+.....................+.... ...+ ..+.+..+.+|+.... ......+.+|...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~---s~s~d~~~~~~d~~~~---~~~~~~~~~~~~~ 173 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDN-------------RQIV---SGSRDKTIKLWNTLGV---CKYTVQDESHSEW 173 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTS-------------SCEE---EEETTSCEEEECTTSC---EEEEECSSSCSSC
T ss_pred EeecccceeeeecCCCCceeEEEEeecC-------------ccce---eecCCCeEEEEEeCCC---ceEEEEeccccCc
Confidence 9998887766665544433333222211 1111 1122333334433211 1223445689999
Q ss_pred eeEEEeeCCC---EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 357 ILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 357 V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
|..++|++++ ++++++.|++|++||+.+++++..+. |...|++++|+| ++++|++|+.||+|++||+++.+.+..
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeee
Confidence 9999999875 78899999999999999999998887 999999999999 999999999999999999999999988
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE-eeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC-VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
..+...|.+++|+|++.+ ++++.|+.|++||+.+.......... .......|...|++++|+|
T Consensus 253 ~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--------------- 316 (340)
T 4aow_A 253 LDGGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA--------------- 316 (340)
T ss_dssp EECSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT---------------
T ss_pred ecCCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC---------------
Confidence 888899999999998865 45667999999999887654432211 1122346778899999999
Q ss_pred EEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 512 RILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 512 ~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||++|++|+.||.|+|||+.+|.
T Consensus 317 -------------dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 317 -------------DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -------------TSSEEEEEETTSCEEEEEEEC--
T ss_pred -------------CCCEEEEEeCCCEEEEEeCCCcC
Confidence 89999999999999999998874
No 45
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=313.33 Aligned_cols=244 Identities=12% Similarity=0.085 Sum_probs=184.1
Q ss_pred cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC------CCEEEEEeCCCcEEEEEeecCee
Q 005646 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------GQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 211 ~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
+++..+++++.|++|+||++....... .....+.+|.+.|++++|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~---~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~ 247 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHC---VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT 247 (524)
T ss_dssp -----------CEEEEEEEEETTTCCE---EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCc---eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence 445567888999999999986543211 112346678899999999996 57999999999999999976542
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
..... + ....+...+.+|...|.+++|++
T Consensus 248 ~~~~~----------~-----------------------------------------~~~~p~~~l~~h~~~v~sv~~s~ 276 (524)
T 2j04_B 248 DVHVF----------K-----------------------------------------MCEKPSLTLSLADSLITTFDFLS 276 (524)
T ss_dssp SSSEE----------E-----------------------------------------CCCSCSEEECCTTTCEEEEEESS
T ss_pred ccccc----------e-----------------------------------------eecCceEEEEcCCCCEEEEEecC
Confidence 10000 0 00135567889999999999998
Q ss_pred CCEEEEEECCCcEEEEECCCCe-eeeEee-CCCCeEEE--EEeecCC-CEEEEEEcCCcEEEEecCCCcEE-EEeccC--
Q 005646 365 NNYLLSASIDKTVRLWRVGNDH-CLRVFP-HSNYVTCV--HFNPVDD-NYFISGSIDGKVRIWAVLSCHVV-DWVDIR-- 436 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~-~~~~~~-h~~~V~~v--~fsp~~~-~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~-- 436 (686)
++.|++|+.||+|++||++++. +...+. |...|++| +|+| ++ .+|+||+.|++|+|||+++++.. .+..|.
T Consensus 277 ~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 277 PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 7899999999999999999764 444455 99999999 4666 76 89999999999999999987654 233343
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..|.+++|+|+++.+++++.|++|++||++++.+... ...|...|++++|+|
T Consensus 356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~--------l~gH~~~V~sva~Sp-------------------- 407 (524)
T 2j04_B 356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP--------LVSRETTITAIGVSR-------------------- 407 (524)
T ss_dssp CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE--------EEECSSCEEEEECCS--------------------
T ss_pred CcccceEeCCCcCeEEEeCCCCcEEEEECccccccee--------eecCCCceEEEEeCC--------------------
Confidence 2478999999999999999999999999988664321 224678899999999
Q ss_pred CcceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 517 PNVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 517 ~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+|++|++|+.||+|+|||+..
T Consensus 408 --------~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 408 --------LHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp --------SCCBCEEEETTTEEECCBSCS
T ss_pred --------CCCeEEEEECCCEEEEEechH
Confidence 899999999999999999865
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-31 Score=315.31 Aligned_cols=417 Identities=13% Similarity=0.147 Sum_probs=300.0
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
.|...+ .+|++++.++++++.+|.|+||++..... .+.+.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 344444 56778888999999999999999865432 356778999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.+++.+..+..+...+.++.|.++. ...+ ..+.+..+.+|+.... ......+.+|...|.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~-------------~~l~---~~~~dg~i~vw~~~~~---~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK-------------PYVL---SGSDDLTVKLWNWENN---WALEQTFEGHEHFVM 144 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS-------------SEEE---EEETTSEEEEEEGGGT---SEEEEEEECCSSCEE
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCC-------------CEEE---EEcCCCEEEEEECCCC---ceEEEEEcCCCCcEE
Confidence 99999888887666655555554433 2221 1222334444443211 134567889999999
Q ss_pred EEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeec-CCCEEEEEEcCCcEEEEecCCCcEEE-E
Q 005646 359 DLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVD-W 432 (686)
Q Consensus 359 ~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~-~~~~l~sgs~Dg~V~iwd~~~~~~~~-~ 432 (686)
+++|+| ++ .|++++.|++|++||+.++.....+. +...|++++|+|. ++.+|++|+.||.|++||+.+++.+. +
T Consensus 145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 999999 66 99999999999999999888777766 5589999999983 67899999999999999999988774 4
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
..|...|++++|+|+|+++++++.||.|++||+.+++.... ...+...+.+++|+|++...+++++.++.+.
T Consensus 225 ~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT--------LNVGLERSWCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEE--------ECCSSSSEEEEEECTTCGGGEEEEEETTEEE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--------eecCCCcEEEEEEccCCCceEEEEEeCCCEE
Confidence 55888999999999999999999999999999988765432 2335578999999995555556666677777
Q ss_pred EEeCC----------------------------------------------------------cceeEcCCCCEEEEEeC
Q 005646 513 ILQGP----------------------------------------------------------NVIGKYKDGKHIVSAGE 534 (686)
Q Consensus 513 iwd~~----------------------------------------------------------~~~~~~~dg~~l~sgs~ 534 (686)
+|+.. ..++++|+|++|++++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~- 375 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG- 375 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-
T ss_pred EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-
Confidence 77631 2467888999999998
Q ss_pred CCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcc---cccCCC--CCcccccCCCccccCc
Q 005646 535 DSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQL---HVSDDD--SPENLAFAPARFSLGQ 609 (686)
Q Consensus 535 Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l---~~~~~~--~~~~~~~spd~~~~~~ 609 (686)
|+.+++|++...... .......++++++|...........+ ..+.++ ....+.|+||+.. +.
T Consensus 376 ~~~~~i~~~~~~~~~------------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~-~~ 442 (814)
T 3mkq_A 376 DGEYVIYTALAWRNK------------AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLF-SG 442 (814)
T ss_dssp TTEEEEEETTTTEEE------------EEEECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCEEE-CS
T ss_pred CCEEEEEECcccccc------------CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCcccee-cc
Confidence 899999997643210 01113345555554421111111111 122333 3355678999532 24
Q ss_pred cccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEe------cCCCeEeEEeec
Q 005646 610 EYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTA------GWDGRIRSFLNY 680 (686)
Q Consensus 610 ~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~------~~DG~Ir~w~~~ 680 (686)
.+++.+.++.+.+|+.++......+... +..+ ..+++|..|+++ +.|+.+.+|.|.
T Consensus 443 ~l~~~~~d~~v~~~d~~~~~~~~~~~~~--------------~~~v-~~s~dg~~la~~~~~~~~~~~~~~~~~~~~ 504 (814)
T 3mkq_A 443 ALLGVKSDGFVYFFDWDNGTLVRRIDVN--------------AKDV-IWSDNGELVMIVNTNSNGDEASGYTLLFNK 504 (814)
T ss_dssp SSEEEEETTEEEEECTTTCCEEEEESSC--------------EEEE-EECTTSSEEEEEECCCSSCSCSEEEEEECH
T ss_pred eEEEEecCCEEEEEECCcCcEEEEEecC--------------CCEE-EEcCCCCEEEEEEcCcccCCceEEEEEech
Confidence 5666778999999997665432222101 1112 345569999999 888888888764
No 47
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-32 Score=288.26 Aligned_cols=211 Identities=23% Similarity=0.401 Sum_probs=176.8
Q ss_pred CceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 243 GQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
..+|+||.+.|++|+|+|+ +++|||||.|++|+|||+.+.+...
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~----------------------------------- 75 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY----------------------------------- 75 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-----------------------------------
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-----------------------------------
Confidence 3578999999999999997 6899999999999999997654211
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEE
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~ 399 (686)
..+...+.+|...|.+++|+|++ +|++++.|+.|++|+........... +...+..
T Consensus 76 ----------------------~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 133 (340)
T 4aow_A 76 ----------------------GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS 133 (340)
T ss_dssp ----------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred ----------------------ceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeE
Confidence 02456778999999999999999 99999999999999999998887777 7888999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEE--EeccCCcEEEEEEccCC--CEEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~~~~V~~v~~spdg--~~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
+.++| ++++|++|+.|+.+++||+....... ...|...+..++|++++ .++++++.|+.|++||+.++++...
T Consensus 134 ~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-- 210 (340)
T 4aow_A 134 VAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-- 210 (340)
T ss_dssp EEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE--
T ss_pred EEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE--
Confidence 99999 89999999999999999998766543 34678889999999865 5688999999999999998875432
Q ss_pred EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
...|...|++++|+| ++++|++|+.||.|+|||+.+.+
T Consensus 211 ------~~~h~~~v~~~~~s~----------------------------~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 211 ------HIGHTGYLNTVTVSP----------------------------DGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp ------ECCCSSCEEEEEECT----------------------------TSSEEEEEETTCEEEEEETTTTE
T ss_pred ------ecCCCCcEEEEEECC----------------------------CCCEEEEEeCCCeEEEEEeccCc
Confidence 345778899999999 67777777777777777776543
No 48
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-33 Score=330.28 Aligned_cols=437 Identities=13% Similarity=0.090 Sum_probs=272.5
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..|++ ++++++++.|+.|+||++..... ...+. |.+.|++++|+|++++|++|+.||+|++||+.+++..
T Consensus 64 l~fsp-g~~L~S~s~D~~v~lWd~~~~~~-------~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~- 133 (902)
T 2oaj_A 64 MRFVK-GIYLVVINAKDTVYVLSLYSQKV-------LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS- 133 (902)
T ss_dssp EEEET-TTEEEEEETTCEEEEEETTTCSE-------EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-
T ss_pred EEEcC-CCEEEEEECcCeEEEEECCCCcE-------EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-
Confidence 45566 66799999999999999876432 12333 6789999999999999999999999999999887753
Q ss_pred eeccCCCCCcce-EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc-------------
Q 005646 287 EVDIPEIDPSCI-YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG------------- 352 (686)
Q Consensus 287 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------- 352 (686)
.+..+.. ... .....+...+..+.+.+.....+.. ...+..+ +|+.+.. +++..+.+
T Consensus 134 ~~~i~~~--~~~~~~~~~h~~~V~sl~~sp~~~~~l~~--g~~dg~v-lWd~~~~----~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 134 SFKLDNL--QKSSFFPAARLSPIVSIQWNPRDIGTVLI--SYEYVTL-TYSLVEN----EIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp EEEECCH--HHHHTCSSSCCCCCCEEEEETTEEEEEEE--ECSSCEE-EEETTTT----EEEEEECCCBCTTCCCSTTCC
T ss_pred cceeccc--cccccccccCCCCeEEEEEccCCCCEEEE--EeCCCcE-EEECCCC----ceEEEEecccCCcCCCccccc
Confidence 1111000 000 0001122334444444432222211 2233444 5554321 23334433
Q ss_pred -----CCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeE--ee-----------------CCCCeEEEEEeec--
Q 005646 353 -----HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV--FP-----------------HSNYVTCVHFNPV-- 405 (686)
Q Consensus 353 -----h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~--~~-----------------h~~~V~~v~fsp~-- 405 (686)
|...|.+++|+|++ +|++++.|++|++||+.+++++.. +. |...|++++|+|.
T Consensus 205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~ 284 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENN 284 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSS
T ss_pred ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCC
Confidence 46789999999999 999999999999999999988753 21 2447999999652
Q ss_pred -C-CCEEEEEEcC-----CcEEEEe-------------------------------------------------------
Q 005646 406 -D-DNYFISGSID-----GKVRIWA------------------------------------------------------- 423 (686)
Q Consensus 406 -~-~~~l~sgs~D-----g~V~iwd------------------------------------------------------- 423 (686)
+ +.+|++|+.| ..|++|+
T Consensus 285 pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~ 364 (902)
T 2oaj_A 285 PEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNP 364 (902)
T ss_dssp TTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSC
T ss_pred CCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCc
Confidence 2 2455666443 1444444
Q ss_pred ----------------cCCCcEEEE--------eccCCcEEE----------------------------------EEEc
Q 005646 424 ----------------VLSCHVVDW--------VDIRQIVTA----------------------------------VCYR 445 (686)
Q Consensus 424 ----------------~~~~~~~~~--------~~~~~~V~~----------------------------------v~~s 445 (686)
+.++..... ..|...|++ ++|+
T Consensus 365 ~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s 444 (902)
T 2oaj_A 365 GLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA 444 (902)
T ss_dssp SEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC
T ss_pred eeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc
Confidence 333321100 011233444 4457
Q ss_pred cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee---ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc----
Q 005646 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH---SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---- 518 (686)
Q Consensus 446 pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---- 518 (686)
|+|++|++|+.||+|++||+.++.+.....+... .....|...|++++|+| ++.+|++++.|++|+||+..+
T Consensus 445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC-
T ss_pred ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCcccc
Confidence 8999999999999999999988743211111110 00126778999999999 889999999999999998531
Q ss_pred --------------------------------------------------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 519 --------------------------------------------------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 519 --------------------------------------------------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
.++|+||| +||+|+.|++|+|||
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID 602 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence 25688899 999999999999999
Q ss_pred CCCCCCCCccccccccccc-cccC-CcEEEec-----CCC-------------C-cCCCC---CCCCcccccCCCC----
Q 005646 543 CIGHEEPAHDQAKTIRSLE-RFTT-NASIAIP-----WCG-------------L-KCGNA---EKEPQLHVSDDDS---- 594 (686)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~s-----~~g-------------~-~~~~~---~~g~~l~~~~~~~---- 594 (686)
+.++... .....+.+. .+.. ...++|+ .|| + ++|++ .+|..+..+.++.
T Consensus 603 ~~~~~~~---~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~ 679 (902)
T 2oaj_A 603 RRGPAII---YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTS 679 (902)
T ss_dssp TTTTEEE---EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCS
T ss_pred CCCCeEE---EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCC
Confidence 8775411 001112232 3333 5667777 554 1 57888 7888777765442
Q ss_pred -Ccccc---cCCCc-----------------cccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccc
Q 005646 595 -PENLA---FAPAR-----------------FSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCL 653 (686)
Q Consensus 595 -~~~~~---~spd~-----------------~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (686)
..++. |+.+. ......++ .+.+..+++|+..+....... ....|.
T Consensus 680 ~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l-~~~~~~ir~~~~~~~k~~~k~-------------~~~~~~ 745 (902)
T 2oaj_A 680 KGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVL-ITGFDDIRLITLGKSKSTHKG-------------FKYPLA 745 (902)
T ss_dssp SCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEE-EECSSEEEEECTTCCCEEEEE-------------CSSCEE
T ss_pred CCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEE-EEeccceEEEeCccccceeeE-------------ccccee
Confidence 22221 32110 00112223 345888999997654322111 001122
Q ss_pred cCcc----------CCCCceEEEEecCCCeEeEEeecC
Q 005646 654 CTTS----------SHAWGLVIVTAGWDGRIRSFLNYG 681 (686)
Q Consensus 654 ~~~~----------~~~~g~~ivT~~~DG~Ir~w~~~g 681 (686)
.... ++..|..||++..||+||+|..-+
T Consensus 746 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~ 783 (902)
T 2oaj_A 746 ATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPD 783 (902)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTT
T ss_pred eeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcc
Confidence 2211 456689999999999999998543
No 49
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-33 Score=302.76 Aligned_cols=262 Identities=15% Similarity=0.171 Sum_probs=203.9
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCcee-cccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCe
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI-QAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
...|++++..++++. .|+... . ....+ .+|.+.|++++|+| ++++||||+.||+|+|||+.+..
T Consensus 32 ~~~f~~~~~~~~~~~------~w~~~g--~------~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~ 97 (437)
T 3gre_A 32 YKEFGPIQEIVRSPN------MGNLRG--K------LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII 97 (437)
T ss_dssp CGGGCCCCCCCCCCC------GGGCCC--C------EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH
T ss_pred hhhcCCccccccccc------cccccc--e------EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccc
Confidence 345677787777765 254221 1 12345 78999999999999 99999999999999999987622
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
....+ +....+ +|...|.+++|+
T Consensus 98 ~~~~~--------------------------------------------------------~~~~~~-~h~~~v~~~~~~ 120 (437)
T 3gre_A 98 VGEVY--------------------------------------------------------SSSLTY-DCSSTVTQITMI 120 (437)
T ss_dssp TTCCC--------------------------------------------------------SCSEEE-ECSSCEEEEEEC
T ss_pred cCccc--------------------------------------------------------ceeeec-cCCCCEEEEEEe
Confidence 00000 112222 489999999999
Q ss_pred CCC-EEEEEECCCcEEEEECC---CCeeeeEee-------------CCCCeEEEE--EeecCCCEEEEEEcCCcEEEEec
Q 005646 364 KNN-YLLSASIDKTVRLWRVG---NDHCLRVFP-------------HSNYVTCVH--FNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~---~~~~~~~~~-------------h~~~V~~v~--fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
|++ +|++++.|++|++||+. +++++..+. +...+.++. ++| ++++|++|+.||.|++||+
T Consensus 121 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 121 PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Confidence 988 99999999999999995 554443332 567788887 446 7899999999999999999
Q ss_pred CCCcEEEEe-c--cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC---C
Q 005646 425 LSCHVVDWV-D--IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ---D 498 (686)
Q Consensus 425 ~~~~~~~~~-~--~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~---~ 498 (686)
++++.+... . |...|++++|+|++++|++|+.||.|++||++++++.... ...|...|++++|+|. +
T Consensus 200 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 200 RTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSW-------SFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp TTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-------BCTTCEEEEEEEECTTTCTT
T ss_pred CCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEE-------ecCCCCceEEEEeccccCCC
Confidence 999877544 3 6789999999999999999999999999999987654321 1245567999988763 5
Q ss_pred CCeEEEEeCCCcEEEEeCCcc-----------------------------------------eeEcCCCCEEEEEeCCCc
Q 005646 499 SSKVMVSCADSQVRILQGPNV-----------------------------------------IGKYKDGKHIVSAGEDSN 537 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~~~-----------------------------------------~~~~~dg~~l~sgs~Dg~ 537 (686)
+.+|++++.|+.|++||..+. ++++ ++++|++|+.||.
T Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~ 351 (437)
T 3gre_A 273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS 351 (437)
T ss_dssp EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence 669999999999999997632 2344 5689999999999
Q ss_pred EEEEeCCCCC
Q 005646 538 VYMWNCIGHE 547 (686)
Q Consensus 538 V~iWd~~~~~ 547 (686)
|++||+.+++
T Consensus 352 i~~wd~~~~~ 361 (437)
T 3gre_A 352 IVMFSLNELS 361 (437)
T ss_dssp EEEEETTCGG
T ss_pred EEEEECCCcc
Confidence 9999998865
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4e-32 Score=314.19 Aligned_cols=236 Identities=20% Similarity=0.326 Sum_probs=201.3
Q ss_pred ceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
..+++|.+.|++|+|+|+ +++|+||+.|++|+||++.+.....
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------------------------------ 419 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------------------------------ 419 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------------------------------
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------------------------------
Confidence 357899999999999986 5799999999999999987543100
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v 400 (686)
......+.+|...|.+++|+|++ +|++|+.|++|+|||+.+++++..+. |...|+++
T Consensus 420 ---------------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 420 ---------------------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp ---------------------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred ---------------------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE
Confidence 01345678999999999999999 99999999999999999999998887 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe----ccCCcEEEEEEccCC--CEEEEEecCCcEEEEeCCCCeeeeee
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~----~~~~~V~~v~~spdg--~~l~~gs~dg~i~iwd~~~~~~~~~~ 474 (686)
+|+| ++++|++|+.|++|++||+......... .|...|++++|+|++ ..+++|+.||+|++||+.+.++..
T Consensus 479 ~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~-- 555 (694)
T 3dm0_A 479 AFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS-- 555 (694)
T ss_dssp EECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE--
T ss_pred EEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE--
Confidence 9999 9999999999999999998766554432 577889999999987 579999999999999998876542
Q ss_pred eEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEE
Q 005646 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYM 540 (686)
Q Consensus 475 ~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~i 540 (686)
....|...|++++|+| ++.+|++++.|+.|++||..+ .++++|++.+|++++ |+.|+|
T Consensus 556 ------~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~i 627 (694)
T 3dm0_A 556 ------TLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKI 627 (694)
T ss_dssp ------EECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEE
T ss_pred ------EEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEE
Confidence 1345778899999999 889999999999999999753 367889999888776 556999
Q ss_pred EeCCCCC
Q 005646 541 WNCIGHE 547 (686)
Q Consensus 541 Wd~~~~~ 547 (686)
||+.++.
T Consensus 628 wd~~~~~ 634 (694)
T 3dm0_A 628 WDLESKS 634 (694)
T ss_dssp EETTTTE
T ss_pred EECCCCC
Confidence 9998764
No 51
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=284.10 Aligned_cols=230 Identities=21% Similarity=0.341 Sum_probs=193.8
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
...+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--------------------------------------- 65 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--------------------------------------- 65 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC---------------------------------------
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch---------------------------------------
Confidence 35678999999999999999999999999999999997765
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+.+...|.+++
T Consensus 66 -----------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 122 (369)
T 3zwl_B 66 -----------------------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE 122 (369)
T ss_dssp -----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred -----------------------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEE
Confidence 345567899999999999999 99999999999999999999999999999999999
Q ss_pred EeecCCCEEEEEEcC-----CcEEEEecCCCcE------------EEEeccCC--cEEEEEEccCCCEEEEEecCCcEEE
Q 005646 402 FNPVDDNYFISGSID-----GKVRIWAVLSCHV------------VDWVDIRQ--IVTAVCYRPDGQGGIVGSMMGDCRF 462 (686)
Q Consensus 402 fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~------------~~~~~~~~--~V~~v~~spdg~~l~~gs~dg~i~i 462 (686)
|+| ++++|++++.+ |.|++||+..... .....+.. .+.+++|+|++++|++++.||.|++
T Consensus 123 ~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 123 FSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201 (369)
T ss_dssp ECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred Ecc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence 999 99999999999 9999999976531 23334444 8999999999999999999999999
Q ss_pred EeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCC
Q 005646 463 YNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGK 527 (686)
Q Consensus 463 wd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~ 527 (686)
||+.+ ..... ....|...|.+++|+| ++.+|++++.|+.|++||..+ .++++|+++
T Consensus 202 ~d~~~~~~~~~--------~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (369)
T 3zwl_B 202 YDVSNNYEYVD--------SIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKE 272 (369)
T ss_dssp EETTTTTEEEE--------EEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSS
T ss_pred EECCCCcEeEE--------EEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCc
Confidence 99987 34322 1234667899999999 789999999999999999764 367888999
Q ss_pred EEEEEeCCCcEEEEeCC
Q 005646 528 HIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 528 ~l~sgs~Dg~V~iWd~~ 544 (686)
+|++++.++.+.+|...
T Consensus 273 ~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 273 FIILGGGQEAKDVTTTS 289 (369)
T ss_dssp EEEEEECCC--------
T ss_pred eEEEeecCCCceEEEEe
Confidence 99999999955555443
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.2e-33 Score=301.62 Aligned_cols=310 Identities=13% Similarity=0.127 Sum_probs=217.2
Q ss_pred ceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
+...+|...|++|+|+| ++++||+|+.||+|+|||+.+++..
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------------------------- 155 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------------------------- 155 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------------------
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------------------
Confidence 34567999999999999 5779999999999999999766421
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCe
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYV 397 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V 397 (686)
....+.+|.+.|++|+|+| ++ +|++++.|++|++||++++....... +...+
T Consensus 156 -----------------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 212 (435)
T 4e54_B 156 -----------------------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWF 212 (435)
T ss_dssp -----------------------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCC
T ss_pred -----------------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccE
Confidence 2234568999999999998 45 99999999999999998776544443 44578
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCC-EEEEEecCCcEEEEeCCCCeeeeeeeE
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~~~ 476 (686)
.+++|+| ++.+|++|+.||.|++||++...+..+..|...|++++|+|++. +|++|+.|+.|+|||+.+.+.....
T Consensus 213 ~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-- 289 (435)
T 4e54_B 213 CSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-- 289 (435)
T ss_dssp CCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC--
T ss_pred EEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE--
Confidence 9999999 99999999999999999998877777788999999999999886 6778999999999999876543211
Q ss_pred EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCcccccc
Q 005646 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKT 556 (686)
Q Consensus 477 ~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~ 556 (686)
.....|...|++++|+| +|++|++|+.||.|+|||+.++..........
T Consensus 290 ---~~~~~h~~~v~~~~~sp----------------------------dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 290 ---LYSLPHRHPVNAACFSP----------------------------DGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp ---SBCCBCSSCEEECCBCT----------------------------TSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred ---EEeeeccccccceeECC----------------------------CCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 12345778899999999 89999999999999999998876322211111
Q ss_pred ccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCcccccc
Q 005646 557 IRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSS 636 (686)
Q Consensus 557 ~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~ 636 (686)
...... ...+...|.+ ........+++++.. .+.....++.+.+|+.++......+
T Consensus 339 ~~~~~~---~~~~~~~~~~----------------~~~~~~~~~~~d~~~---~~~~~~~~~~i~iwd~~~g~~~~~l-- 394 (435)
T 4e54_B 339 HRHFQH---LTPIKAAWHP----------------RYNLIVVGRYPDPNF---KSCTPYELRTIDVFDGNSGKMMCQL-- 394 (435)
T ss_dssp CCCCSS---SCCCBCEECS----------------SSSCEEEECCCCTTS---CCSSTTCCCCEEEECSSSCCEEEEE--
T ss_pred cccccc---ceeEEEEEcC----------------CCCEEEEEEcCCCCe---EEEEecCCCEEEEEECCCCcEEEEE--
Confidence 110000 0000011110 001112234555321 2223445567889997665532221
Q ss_pred ccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEeec
Q 005646 637 ASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 680 (686)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~~ 680 (686)
...+... ..++..++++|.+||+|+ |++||||+..
T Consensus 395 ----~~~~~~~----v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 395 ----YDPESSG----ISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp ----CCSSCCC----CCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred ----eCCCCCc----EEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 0011000 111123567799999987 8899999753
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.4e-31 Score=290.80 Aligned_cols=264 Identities=19% Similarity=0.338 Sum_probs=223.9
Q ss_pred eecccCc-ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 199 VVDKQGE-GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 199 ~~~~~~~-~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
...|... +.++.++++.+++|+.|+.|++|+...... ...+.+|.+.|++++|+|++ +|++|+.||+|++|
T Consensus 117 l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~-------~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKF-------LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-------EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcE-------EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3455555 467888999999999999999999765432 35677899999999999988 99999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
|+.+++ .+..+.+|...|
T Consensus 189 d~~~~~--------------------------------------------------------------~~~~~~~h~~~v 206 (464)
T 3v7d_B 189 DIKKGC--------------------------------------------------------------CTHVFEGHNSTV 206 (464)
T ss_dssp ETTTTE--------------------------------------------------------------EEEEECCCSSCE
T ss_pred ECCCCc--------------------------------------------------------------EEEEECCCCCcc
Confidence 998775 345566899999
Q ss_pred eEEEee--CCC-EEEEEECCCcEEEEECCCCee-----------------------eeEee-CCCCeEEEEEeecCCCEE
Q 005646 358 LDLSWS--KNN-YLLSASIDKTVRLWRVGNDHC-----------------------LRVFP-HSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 358 ~~l~~s--~~~-~L~s~s~Dg~V~iWd~~~~~~-----------------------~~~~~-h~~~V~~v~fsp~~~~~l 410 (686)
.+++|+ +++ +|++++.|++|++||+.++.. +..+. |...|.++ +| ++++|
T Consensus 207 ~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~l 283 (464)
T 3v7d_B 207 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-HGNIV 283 (464)
T ss_dssp EEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-ETTEE
T ss_pred EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-CCCEE
Confidence 999998 465 999999999999999988753 22333 88888887 45 78999
Q ss_pred EEEEcCCcEEEEecCCCcEEE-EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 411 ISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
++|+.||.|++||+++++.+. +..|...|++++|+|+++++++|+.||.|++||+.+++.... ...|...|
T Consensus 284 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--------~~~h~~~v 355 (464)
T 3v7d_B 284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT--------LQGHTALV 355 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE--------ECCCSSCE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--------EeCCCCcE
Confidence 999999999999999998774 556889999999999999999999999999999998875432 24577889
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 490 TGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++.|++ ..+++++.|+.|++||..+ .+++++++++|++|+ ||.|+|||+.+++
T Consensus 356 ~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 356 GLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred EEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 9999975 7999999999999999753 356788999999999 8999999999876
No 54
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.1e-32 Score=320.45 Aligned_cols=235 Identities=14% Similarity=0.294 Sum_probs=206.3
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~--------------------------------------- 46 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--------------------------------------- 46 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------------------
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc---------------------------------------
Confidence 35688999999999999999999999999999999998775
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v 400 (686)
.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|+++
T Consensus 47 -----------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~ 103 (814)
T 3mkq_A 47 -----------------------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (814)
T ss_dssp -----------------------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred -----------------------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEE
Confidence 344556799999999999999 99999999999999999999998888 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCC-cEE-EEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEE
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSC-HVV-DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~-~~~-~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
+|+| ++.+|++++.||.|++||+.++ ... ....|...|++++|+| +++.+++++.||.|++||+.++......
T Consensus 104 ~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--- 179 (814)
T 3mkq_A 104 AVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--- 179 (814)
T ss_dssp EECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE---
T ss_pred EEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE---
Confidence 9999 9999999999999999999987 443 5567889999999999 8999999999999999999876543211
Q ss_pred eeccccCCCCCeEEEEEeCC-CCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEE
Q 005646 478 VHSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 478 ~~~~~~~~~~~I~~l~fsp~-~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
...+...+..++|+|. ++..+++++.|+.|++||..+ .++++|++++|++++.||.|++|
T Consensus 180 ----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 180 ----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp ----ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ----ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 1234477999999984 567999999999999999542 36789999999999999999999
Q ss_pred eCCCCC
Q 005646 542 NCIGHE 547 (686)
Q Consensus 542 d~~~~~ 547 (686)
|+.+++
T Consensus 256 d~~~~~ 261 (814)
T 3mkq_A 256 NSSTYK 261 (814)
T ss_dssp ETTTCS
T ss_pred ECCCCc
Confidence 998865
No 55
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.6e-32 Score=290.84 Aligned_cols=286 Identities=13% Similarity=0.170 Sum_probs=228.3
Q ss_pred ecccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC----C---CEEEEEeCCC
Q 005646 200 VDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----G---QYLASAGDDG 272 (686)
Q Consensus 200 ~~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g---~~Lasgs~Dg 272 (686)
..|...+.++.++++.+++++.|+.|+||++...... ........+.+|...|++++|+|+ | ++|++++.||
T Consensus 13 ~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 13 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccc-cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 3577788888888899999999999999998765411 112234567789999999999999 9 9999999999
Q ss_pred cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 273 ~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
.|++|++.+++.... ..+..+.+
T Consensus 92 ~i~iw~~~~~~~~~~---------------------------------------------------------~~~~~~~~ 114 (397)
T 1sq9_A 92 DLLFYRITREDETKK---------------------------------------------------------VIFEKLDL 114 (397)
T ss_dssp CEEEEEEEECTTTCC---------------------------------------------------------EEEEEECC
T ss_pred CEEEEEccCCccccc---------------------------------------------------------ccceeecc
Confidence 999999987652000 01445566
Q ss_pred C-----CCCeeEEEee----CCC-E-EEEEECCCcEEEEECCC------Ceeee-----Ee-------e-CCCCeEEEEE
Q 005646 353 H-----SGEILDLSWS----KNN-Y-LLSASIDKTVRLWRVGN------DHCLR-----VF-------P-HSNYVTCVHF 402 (686)
Q Consensus 353 h-----~~~V~~l~~s----~~~-~-L~s~s~Dg~V~iWd~~~------~~~~~-----~~-------~-h~~~V~~v~f 402 (686)
| ...|.+++|+ |++ + |++++.|+.|++||+.+ ++++. .+ . |...|++++|
T Consensus 115 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 194 (397)
T 1sq9_A 115 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 194 (397)
T ss_dssp SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE
Confidence 7 5899999999 888 8 99999999999999998 66655 55 2 7899999999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEEe-c---c---CCcEEEEEEccCCCEEEEEecC---CcEEEEeCCCCeeee
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-D---I---RQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLEL 472 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~---~---~~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~~~~~ 472 (686)
+| ++ +|++++.||.|++||+++++.+... . | ...|++++|+|++++|++++.| |.|++||+.+++...
T Consensus 195 ~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~ 272 (397)
T 1sq9_A 195 SE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 272 (397)
T ss_dssp CT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc
Confidence 99 88 9999999999999999998877544 4 5 8899999999999999999999 999999998876543
Q ss_pred eeeEEee-----ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----------------------------
Q 005646 473 DAEICVH-----SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----------------------------- 518 (686)
Q Consensus 473 ~~~~~~~-----~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~----------------------------- 518 (686)
....... .....|...|.+++|+| ++.+|++++.|+.|++||..+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 351 (397)
T 1sq9_A 273 SLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS 351 (397)
T ss_dssp EECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred eeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccccc
Confidence 2110000 00011678899999999 789999999999999998531
Q ss_pred -------ceeEcCCC----------CEEEEEeCCCcEEEEeCCCC
Q 005646 519 -------VIGKYKDG----------KHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 519 -------~~~~~~dg----------~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.++|+|++ ++|++|+.||.|+||++.++
T Consensus 352 ~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 352 LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 35677888 79999999999999999875
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-31 Score=285.99 Aligned_cols=276 Identities=14% Similarity=0.125 Sum_probs=214.5
Q ss_pred eeecccCccee--eecCC-CccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCc
Q 005646 198 CVVDKQGEGER--VRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGV 273 (686)
Q Consensus 198 ~~~~~~~~~~~--~s~~~-~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~ 273 (686)
....|...+.+ |++++ +.+++|+.|+.|+||++....... ...+.+|...|++++|+| ++++|++++.|+.
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-----FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-----EECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-----eeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 33455666654 55666 689999999999999987543321 112347999999999999 7899999999999
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
|++||+.+.. +..+ ....+|
T Consensus 143 i~iwd~~~~~-~~~~-----------------------------------------------------------~~~~~~ 162 (383)
T 3ei3_B 143 TTLRDFSGSV-IQVF-----------------------------------------------------------AKTDSW 162 (383)
T ss_dssp EEEEETTSCE-EEEE-----------------------------------------------------------ECCCCS
T ss_pred EEEEECCCCc-eEEE-----------------------------------------------------------eccCCC
Confidence 9999997532 1111 111346
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCC-EEEEEEcCCcEEEEecCC----
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLS---- 426 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~-~l~sgs~Dg~V~iwd~~~---- 426 (686)
...|.+++|+|++ +|++++.|+.|++||+ +++++..+. |...|++++|+| ++. +|++|+.|++|++||+++
T Consensus 163 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~ 240 (383)
T 3ei3_B 163 DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDK 240 (383)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence 6889999999999 9999999999999999 466666666 999999999999 777 999999999999999998
Q ss_pred CcEEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCC----------CCeEEEEEe
Q 005646 427 CHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC----------KRITGFQFL 495 (686)
Q Consensus 427 ~~~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------~~I~~l~fs 495 (686)
+.++....|...|++++|+| +|++|++++.||.|++||+.+.+......... .....|. ..+..+.|+
T Consensus 241 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~s 319 (383)
T 3ei3_B 241 NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP-HRQFQHLTPIKATWHPMYDLIVAGRY 319 (383)
T ss_dssp TCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC-BCCCTTSCCCCCEECSSSSEEEEECB
T ss_pred cceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc-ccccccccceEEeccCCCCceEEEec
Confidence 66777778999999999999 99999999999999999998776543221111 0111122 334446666
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCc-----------------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 496 PQDSSKVMVSCADSQVRILQGPN-----------------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 496 p~~~~~l~~~s~D~~I~iwd~~~-----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
| ++.+ +++.|+.|++||..+ .++|+|++++|++|+ ||.|+|||+++
T Consensus 320 ~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 320 P-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp C-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred C-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 6 4444 677899999999642 247999999999998 99999999975
No 57
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.5e-32 Score=288.69 Aligned_cols=277 Identities=18% Similarity=0.294 Sum_probs=220.7
Q ss_pred cccCcceeeecC------CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC----CCEEEEEeC
Q 005646 201 DKQGEGERVRLN------EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----GQYLASAGD 270 (686)
Q Consensus 201 ~~~~~~~~~s~~------~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~Lasgs~ 270 (686)
.|...+.++.++ ...+++++.++.|+||++..... ...........|...|++++|+|+ |++|++|+.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE--IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC--EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE--EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 466677666554 34577778888999999875432 111111122247789999999999 679999999
Q ss_pred CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 271 Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
||.|++||+.+++ .+..+
T Consensus 94 dg~i~v~d~~~~~--------------------------------------------------------------~~~~~ 111 (366)
T 3k26_A 94 RGIIRIINPITMQ--------------------------------------------------------------CIKHY 111 (366)
T ss_dssp TCEEEEECTTTCC--------------------------------------------------------------EEEEE
T ss_pred CCEEEEEEchhce--------------------------------------------------------------Eeeee
Confidence 9999999998765 34556
Q ss_pred ccCCCCeeEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEe----eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 351 HGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 351 ~~h~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
.+|...|.+++|+| ++ +|++++.|++|++||+.+++++..+ .|...|++++|+| ++++|++++.||.|++||+
T Consensus 112 ~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~ 190 (366)
T 3k26_A 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRI 190 (366)
T ss_dssp ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEEC
Confidence 67999999999999 77 9999999999999999999999888 3999999999999 9999999999999999999
Q ss_pred CCCcEEEE-----------------------------eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee--
Q 005646 425 LSCHVVDW-----------------------------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD-- 473 (686)
Q Consensus 425 ~~~~~~~~-----------------------------~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~-- 473 (686)
++++.... ..|...|++++|+ ++++++++.||.|++||+.+......
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 268 (366)
T 3k26_A 191 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKI 268 (366)
T ss_dssp CSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred CCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccc
Confidence 98654321 1278899999998 77999999999999999987643110
Q ss_pred ----eeEEeeccccCCCCCeEEEEEeCCC--CCeEEEEeCCCcEEEEeCCc---------------------ceeEcCCC
Q 005646 474 ----AEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPN---------------------VIGKYKDG 526 (686)
Q Consensus 474 ----~~~~~~~~~~~~~~~I~~l~fsp~~--~~~l~~~s~D~~I~iwd~~~---------------------~~~~~~dg 526 (686)
...........|...|++++|+| + +.+|++++.|+.|++||..+ .++|+|++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 347 (366)
T 3k26_A 269 KPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS 347 (366)
T ss_dssp CTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred ccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence 01111222345667899999999 6 89999999999999999753 25788899
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 005646 527 KHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 527 ~~l~sgs~Dg~V~iWd~~~ 545 (686)
++|++|+.||.|+|||+.+
T Consensus 348 ~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 348 SILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SEEEEEETTSEEEEEEC--
T ss_pred CeEEEEeCCCEEEEEEecC
Confidence 9999999999999999863
No 58
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-33 Score=294.30 Aligned_cols=241 Identities=12% Similarity=0.157 Sum_probs=189.1
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
...+|+++++++++++.|+.|+||+...... .....+.+|...|++++|+|++++|++++.|++|+|||+.+++.
T Consensus 15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp SCCEECSSSSEEECCCSSSCBCEEEEETTEE-----EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred EEEEECCCCCEEEEecCCCEEEEEEccCCce-----EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 4467788889999999999999999875421 22356788999999999999999999999999999999987540
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
. ++...+.+|...|.+++|+|
T Consensus 90 ~-----------------------------------------------------------~~~~~~~~~~~~v~~~~~~~ 110 (377)
T 3dwl_C 90 W-----------------------------------------------------------KQTLVLLRLNRAATFVRWSP 110 (377)
T ss_dssp C-----------------------------------------------------------CCEEECCCCSSCEEEEECCT
T ss_pred e-----------------------------------------------------------eeeeEecccCCceEEEEECC
Confidence 0 23455677999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCe---eeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC------------
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDH---CLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS------------ 426 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~---~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~------------ 426 (686)
++ +|++++.|++|++||+.+++ +...+. |...|++++|+| ++++|++|+.|++|++||+..
T Consensus 111 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 189 (377)
T 3dwl_C 111 NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVW 189 (377)
T ss_dssp TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSS
T ss_pred CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCcccccc
Confidence 99 99999999999999999887 355555 899999999999 999999999999999999952
Q ss_pred ------CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 427 ------CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 427 ------~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
++++....|...|++++|+|+|++|++++.||.|++||+.+++.... .......|...|++++|+| ++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~v~~~~~s~-~~~ 264 (377)
T 3dwl_C 190 GSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR----ALITVKLSQLPLRSLLWAN-ESA 264 (377)
T ss_dssp CSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE----ECCCEECSSSCEEEEEEEE-TTE
T ss_pred ccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce----eeEeecCCCCceEEEEEcC-CCC
Confidence 34444448889999999999999999999999999999998765211 1112345678899999999 777
Q ss_pred eEEEEeCCCcEEEEeC
Q 005646 501 KVMVSCADSQVRILQG 516 (686)
Q Consensus 501 ~l~~~s~D~~I~iwd~ 516 (686)
+|++++.++.+ +|+.
T Consensus 265 ~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 265 IVAAGYNYSPI-LLQG 279 (377)
T ss_dssp EEEEESSSSEE-EECC
T ss_pred EEEEEcCCcEE-EEEe
Confidence 88777666655 6654
No 59
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-32 Score=293.79 Aligned_cols=236 Identities=12% Similarity=0.143 Sum_probs=184.2
Q ss_pred ecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
++.|.++|++++|+|+|++||+|+.|+.|+|||+.++..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------------------- 45 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------------------------- 45 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----------------------------------------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----------------------------------------
Confidence 445788999999999999999999999999999987631
Q ss_pred ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe---eeeEe-eCCCCeEEE
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH---CLRVF-PHSNYVTCV 400 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~---~~~~~-~h~~~V~~v 400 (686)
+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++ +...+ .|...|+++
T Consensus 46 -------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 46 -------------------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp -------------------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred -------------------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 1234456799999999999999 99999999999999999887 44444 499999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCCCc----EEEEec-cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee--
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD-- 473 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~-~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~-- 473 (686)
+|+| ++++|++|+.|+.|++||+++++ ...+.. |...|++++|+|++++|++++.||.|++||+........
T Consensus 107 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 9999 99999999999999999999886 334455 889999999999999999999999999999864332110
Q ss_pred --------eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-------------------ceeEcCCC
Q 005646 474 --------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-------------------VIGKYKDG 526 (686)
Q Consensus 474 --------~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-------------------~~~~~~dg 526 (686)
......... .|...|++++|+| ++.+|++++.|+.|++||..+ .++|+|++
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred ccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 001111112 6888999999999 789999999999999999542 35688899
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 005646 527 KHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 527 ~~l~sgs~Dg~V~iWd~~~ 545 (686)
++|++|+.|+.+ +|+...
T Consensus 264 ~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EEEEEESSSSEE-EECCCC
T ss_pred CEEEEEcCCcEE-EEEeCC
Confidence 999999877665 777654
No 60
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1e-32 Score=287.60 Aligned_cols=236 Identities=18% Similarity=0.252 Sum_probs=190.6
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+.+|.+.|++++|+|+|++||||+.|++|+|||+.++..
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------- 47 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------- 47 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------------------------
Confidence 34678999999999999999999999999999999987641
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--C-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYV 397 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V 397 (686)
..+..+.+|.+.|.+++|+++ + +|++++.|++|++||+.+++ ++..+. |...|
T Consensus 48 ---------------------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V 106 (316)
T 3bg1_A 48 ---------------------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSV 106 (316)
T ss_dssp ---------------------EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCC
T ss_pred ---------------------EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCce
Confidence 124567789999999999863 5 99999999999999999874 455555 99999
Q ss_pred EEEEEeecC--CCEEEEEEcCCcEEEEecCCCcEE----EEeccCCcEEEEEEccC-----------------CCEEEEE
Q 005646 398 TCVHFNPVD--DNYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPD-----------------GQGGIVG 454 (686)
Q Consensus 398 ~~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~~~~----~~~~~~~~V~~v~~spd-----------------g~~l~~g 454 (686)
++++|+| + +.+|++|+.|++|++||++++... ....|...|.+++|+|+ +++|++|
T Consensus 107 ~~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 185 (316)
T 3bg1_A 107 NSVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG 185 (316)
T ss_dssp CEEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC
T ss_pred EEEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe
Confidence 9999999 5 789999999999999999876321 23457788999999997 4789999
Q ss_pred ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC---CCeEEEEeCCCcEEEEeCCc-------------
Q 005646 455 SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD---SSKVMVSCADSQVRILQGPN------------- 518 (686)
Q Consensus 455 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~---~~~l~~~s~D~~I~iwd~~~------------- 518 (686)
+.|++|++||+...... ........|...|.+++|+|+. ..+|++++.|++|++|+..+
T Consensus 186 s~D~~v~lWd~~~~~~~-----~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~ 260 (316)
T 3bg1_A 186 GCDNLIKLWKEEEDGQW-----KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK 260 (316)
T ss_dssp BTTSBCCEEEECTTSCE-----EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE
T ss_pred cCCCeEEEEEeCCCCcc-----ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc
Confidence 99999999999754210 0111245688899999999943 37899999999999998542
Q ss_pred ------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 519 ------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 519 ------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.++|+|++++|++|+.|++|+||+...
T Consensus 261 ~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 261 FNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 267889999999999999999999864
No 61
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.7e-32 Score=285.09 Aligned_cols=274 Identities=13% Similarity=0.167 Sum_probs=220.4
Q ss_pred ccCccee--eecCCCcc-ceeec---cceEEEEEcCCccccccccccCceecccCCceEEEEEeeC---CCEEEEEeCCC
Q 005646 202 KQGEGER--VRLNEEDA-MFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD---GQYLASAGDDG 272 (686)
Q Consensus 202 ~~~~~~~--~s~~~~~l-~~g~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~Dg 272 (686)
|...+.+ |++++..+ ++++. |+.|+||++....... ....+|...|++++|+|+ |++|++|+.||
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------LREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------EEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------eeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 5555554 55666545 45555 8999999987643211 112369999999999998 79999999999
Q ss_pred cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc
Q 005646 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (686)
Q Consensus 273 ~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (686)
.|++||+.+++ .++..+.+
T Consensus 91 ~i~iwd~~~~~-------------------------------------------------------------~~~~~~~~ 109 (357)
T 3i2n_A 91 NLHIWNLEAPE-------------------------------------------------------------MPVYSVKG 109 (357)
T ss_dssp CEEEECTTSCS-------------------------------------------------------------SCSEEECC
T ss_pred eEEEEeCCCCC-------------------------------------------------------------ccEEEEEe
Confidence 99999997654 24566778
Q ss_pred CCCCeeEEEe------eCCC-EEEEEECCCcEEEEECCCCe-eeeEee-CC----CCeEEEE----EeecCCCEEEEEEc
Q 005646 353 HSGEILDLSW------SKNN-YLLSASIDKTVRLWRVGNDH-CLRVFP-HS----NYVTCVH----FNPVDDNYFISGSI 415 (686)
Q Consensus 353 h~~~V~~l~~------s~~~-~L~s~s~Dg~V~iWd~~~~~-~~~~~~-h~----~~V~~v~----fsp~~~~~l~sgs~ 415 (686)
|...|.++.| +|++ +|++++.|++|++||+.+++ ++..+. |. ..|++++ |+| ++++|++++.
T Consensus 110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~ 188 (357)
T 3i2n_A 110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYD 188 (357)
T ss_dssp CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEET
T ss_pred cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEcc
Confidence 9999999965 5777 99999999999999999887 666665 33 4899999 677 9999999999
Q ss_pred CCcEEEEecCCCcEEEEeccCCcEEEEEEcc---CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEE
Q 005646 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp---dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l 492 (686)
||.|++||+++++......+...|++++|+| +++++++++.||.|++||+.+++........ ....|...|+++
T Consensus 189 d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~v~~~ 265 (357)
T 3i2n_A 189 NGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV---SEKAHKSTVWQV 265 (357)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE---EEECCSSCEEEE
T ss_pred CCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee---ccCCCcCCEEEE
Confidence 9999999999999988888999999999999 9999999999999999999876543322111 123577899999
Q ss_pred EEeCCCCC-eEEEEeCCCcEEEEeCC----------------------------------cceeEcCCCCEEE-EEeCCC
Q 005646 493 QFLPQDSS-KVMVSCADSQVRILQGP----------------------------------NVIGKYKDGKHIV-SAGEDS 536 (686)
Q Consensus 493 ~fsp~~~~-~l~~~s~D~~I~iwd~~----------------------------------~~~~~~~dg~~l~-sgs~Dg 536 (686)
+|+| ++. ++++++.|+.|++||.. +.++|+|++++|+ +++.||
T Consensus 266 ~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 266 RHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp EEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred EECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence 9999 555 89999999999999964 2467899999998 899999
Q ss_pred cEEEEeCCCCC
Q 005646 537 NVYMWNCIGHE 547 (686)
Q Consensus 537 ~V~iWd~~~~~ 547 (686)
.|+||++.+.+
T Consensus 345 ~i~iw~~~~~~ 355 (357)
T 3i2n_A 345 TVRVLIVTKLN 355 (357)
T ss_dssp EEEEEEECC--
T ss_pred cEEEEECCCcc
Confidence 99999998754
No 62
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.9e-32 Score=298.74 Aligned_cols=277 Identities=17% Similarity=0.200 Sum_probs=203.1
Q ss_pred cccCcceeeec---CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEE
Q 005646 201 DKQGEGERVRL---NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~~~s~---~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~v 276 (686)
.+...+.++.+ +++.+|+|+.||.|+||++....... ...+.+|.+.|++|+|+| ++++|+||+.||+|+|
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-----~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-----FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-----EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-----EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 45555655544 34578999999999999987543321 234568999999999998 7899999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.++.... + .....+...
T Consensus 192 wd~~~~~~~~-~-----------------------------------------------------------~~~~~~~~~ 211 (435)
T 4e54_B 192 QDFKGNILRV-F-----------------------------------------------------------ASSDTINIW 211 (435)
T ss_dssp EETTSCEEEE-E-----------------------------------------------------------ECCSSCSCC
T ss_pred eeccCCceeE-E-----------------------------------------------------------eccCCCCcc
Confidence 9987543111 0 111234556
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE----
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV---- 430 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~---- 430 (686)
+.+++|+|++ +|++|+.|++|++||++.. ++..+. |...|++++|+|....+|++|+.|++|+|||+++.+..
T Consensus 212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~ 290 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL 290 (435)
T ss_dssp CCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred EEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE
Confidence 8899999999 9999999999999999754 445555 99999999999944568999999999999999876533
Q ss_pred EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe----
Q 005646 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC---- 506 (686)
Q Consensus 431 ~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s---- 506 (686)
....|...|++++|+|+|++|++++.||.|+|||+.++....... .+.........+....|+| +...+++++
T Consensus 291 ~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~ 367 (435)
T 4e54_B 291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI--PHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDP 367 (435)
T ss_dssp BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC--CCCCCCCSSSCCCBCEECS-SSSCEEEECCCCT
T ss_pred EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe--cccccccccceeEEEEEcC-CCCEEEEEEcCCC
Confidence 345688999999999999999999999999999998876543211 1111111111233345565 344444443
Q ss_pred --------CCCcEEEEeCCcc-----------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 507 --------ADSQVRILQGPNV-----------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 507 --------~D~~I~iwd~~~~-----------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++.|++||..+. .+|+|+|++|++|+ |++|+||++++++
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 3467999986431 35899999999986 8899999999875
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-31 Score=282.22 Aligned_cols=266 Identities=14% Similarity=0.218 Sum_probs=219.2
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+|+++++.+++++.++.|+||+...... .....+.+|...|++++|+|++++|++++.||.|++||+.+++..
T Consensus 13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 87 (372)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence 356677888999999999999999865431 123567789999999999999999999999999999999876522
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
. ...+..|...|.+++|+|+
T Consensus 88 ~------------------------------------------------------------~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 88 P------------------------------------------------------------TLVILRINRAARCVRWAPN 107 (372)
T ss_dssp E------------------------------------------------------------EEECCCCSSCEEEEEECTT
T ss_pred e------------------------------------------------------------eEEeecCCCceeEEEECCC
Confidence 1 2233568899999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCee---eeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC--------------
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHC---LRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-------------- 425 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~---~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~-------------- 425 (686)
+ +|++++.|+.|++||+..+.. ...+. |...|++++|+| ++++|++++.||.|++||++
T Consensus 108 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 186 (372)
T 1k8k_C 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186 (372)
T ss_dssp SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccc
Confidence 9 999999999999999988763 33332 889999999999 99999999999999999954
Q ss_pred ----CCcEEE-EeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 426 ----SCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 426 ----~~~~~~-~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
.++.+. +..|...|++++|+|++++|++++.||.|++||+.+++.... ...|...|++++|+| ++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~ 257 (372)
T 1k8k_C 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT--------LASETLPLLAVTFIT-ESS 257 (372)
T ss_dssp SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE--------EECSSCCEEEEEEEE-TTE
T ss_pred cccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE--------EccCCCCeEEEEEec-CCC
Confidence 555554 447888999999999999999999999999999987765432 224567899999999 666
Q ss_pred eEEEEeCCCcEEEEeCCc--------------------------------------------------------ceeEc-
Q 005646 501 KVMVSCADSQVRILQGPN--------------------------------------------------------VIGKY- 523 (686)
Q Consensus 501 ~l~~~s~D~~I~iwd~~~--------------------------------------------------------~~~~~- 523 (686)
+++++ .|+.|++|+..+ .++++
T Consensus 258 ~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 336 (372)
T 1k8k_C 258 LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS 336 (372)
T ss_dssp EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE
T ss_pred EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEec
Confidence 66666 999999998644 13344
Q ss_pred CCC---CEEEEEeCCCcEEEEeCCCCC
Q 005646 524 KDG---KHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 524 ~dg---~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++| ++|+||+.||.|+||++.+++
T Consensus 337 ~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 337 GGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp STTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred CCCcceeeEEEecCCCceEEEEecChh
Confidence 577 999999999999999998754
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.5e-31 Score=282.25 Aligned_cols=307 Identities=12% Similarity=0.147 Sum_probs=219.7
Q ss_pred ceecccCCceEEEEEeeCC-CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
..+.+|...|++++|+|++ ++||+|+.||.|+|||+.+++....
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------------- 111 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF----------------------------------- 111 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------------------------
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------------------------
Confidence 3567899999999999999 9999999999999999987652211
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee----CCCC
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP----HSNY 396 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~ 396 (686)
..+.+|...|.+++|+| ++ +|++++.|++|++||+... .+..+. |...
T Consensus 112 -------------------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~ 165 (383)
T 3ei3_B 112 -------------------------IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYW 165 (383)
T ss_dssp -------------------------ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCC
T ss_pred -------------------------eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCC
Confidence 12236999999999999 55 9999999999999999964 444443 4588
Q ss_pred eEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCC-EEEEEecCCcEEEEeCCCCeeeeeee
Q 005646 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAE 475 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~~ 475 (686)
|++++|+| ++++|++|+.|+.|++||++...+..+..|...|++++|+|+++ +|++++.|+.|++||+.+.+......
T Consensus 166 v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 244 (383)
T 3ei3_B 166 YCCVDVSV-SRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI 244 (383)
T ss_dssp EEEEEEET-TTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE
T ss_pred eEEEEECC-CCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE
Confidence 99999999 99999999999999999997666667778999999999999999 89999999999999998733211110
Q ss_pred EEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccc
Q 005646 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAK 555 (686)
Q Consensus 476 ~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~ 555 (686)
. ...|...|++++|+|. ++++|++++.|+.|+|||+.+++........
T Consensus 245 -~----~~~~~~~v~~~~~s~~---------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 245 -A----EMPHEKPVNAAYFNPT---------------------------DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp -E----EEECSSCEEEEEECTT---------------------------TSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred -E----EecCCCceEEEEEcCC---------------------------CCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 0 1135678999999883 6889999999999999999887632221111
Q ss_pred cccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccc
Q 005646 556 TIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLS 635 (686)
Q Consensus 556 ~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~ 635 (686)
....... .......+..+ .....++|+||+.. +++.|+.+.+|+..+......+.
T Consensus 293 ~~~~~~~-~~~~~~~~~p~------------------~~~~~~~~s~dg~~------s~s~d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 293 PHRQFQH-LTPIKATWHPM------------------YDLIVAGRYPDDQL------LLNDKRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp CBCCCTT-SCCCCCEECSS------------------SSEEEEECBCCTTT------CTTCCCCEEEEETTTCCEEEEEC
T ss_pred ccccccc-ccceEEeccCC------------------CCceEEEecCCccc------ccCCCCeEEEEecCCCceeeeec
Confidence 1111100 00000111111 11223567888422 67899999999977655332221
Q ss_pred cccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEeec
Q 005646 636 SASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 680 (686)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~~~ 680 (686)
..... .......++++|.+|+||+ ||+|++|+..
T Consensus 348 --~~~~~--------~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 348 --DPNAA--------GIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp --BTTBC--------SCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred --CCCCC--------ceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 00000 0111113566799999997 9999999853
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.9e-31 Score=272.19 Aligned_cols=247 Identities=17% Similarity=0.241 Sum_probs=198.9
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~v 276 (686)
.|...+ .+|+++++++++|+.|+.|+||++..... ....++.+|.++|++++|++ +|++||||+.|++|+|
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 355555 45778899999999999999999864322 12356889999999999986 4899999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++. ..+..+.+|...
T Consensus 82 Wd~~~~~~------------------------------------------------------------~~~~~~~~h~~~ 101 (297)
T 2pm7_B 82 WKEENGRW------------------------------------------------------------SQIAVHAVHSAS 101 (297)
T ss_dssp EEBSSSCB------------------------------------------------------------CCCEEECCCSSC
T ss_pred EEcCCCce------------------------------------------------------------EEEEEeecCCCc
Confidence 99976531 134556789999
Q ss_pred eeEEEeeCC--C-EEEEEECCCcEEEEECCCCee--eeEe-eCCCCeEEEEEeecC-------------CCEEEEEEcCC
Q 005646 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHC--LRVF-PHSNYVTCVHFNPVD-------------DNYFISGSIDG 417 (686)
Q Consensus 357 V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~--~~~~-~h~~~V~~v~fsp~~-------------~~~l~sgs~Dg 417 (686)
|.+++|+|+ + +|++++.|++|++||++++.. ...+ .|...|++++|+| + +++|++|+.|+
T Consensus 102 v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~~~~~~~~~~~~~l~sgs~D~ 180 (297)
T 2pm7_B 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP-ATIEEDGEHNGTKESRKFVTGGADN 180 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC-CC------------CCEEEEEETTS
T ss_pred eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC-CcccccccCCCCCCcceEEEEcCCC
Confidence 999999997 6 999999999999999987632 2333 3999999999999 4 57999999999
Q ss_pred cEEEEecCCCc----EE-EEeccCCcEEEEEEccCC---CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 418 KVRIWAVLSCH----VV-DWVDIRQIVTAVCYRPDG---QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 418 ~V~iwd~~~~~----~~-~~~~~~~~V~~v~~spdg---~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
+|+|||++++. .. .+..|...|.+++|+|++ ++|++++.|++|+|||+.......... .. ....|...|
T Consensus 181 ~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~--~~-~~~~~~~~v 257 (297)
T 2pm7_B 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT--LL-KEEKFPDVL 257 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE--ES-SSSCCSSCE
T ss_pred cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcccee--ee-ecccCCCcE
Confidence 99999998765 33 456789999999999985 899999999999999997643211111 11 123456789
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 490 TGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.+++|+| ++.+|++++.|+.|++|+..
T Consensus 258 ~~~~~s~-~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 258 WRASWSL-SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred EEEEECC-CCCEEEEEcCCCcEEEEEEC
Confidence 9999999 88999999999999999865
No 66
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.3e-32 Score=287.54 Aligned_cols=297 Identities=9% Similarity=0.042 Sum_probs=211.3
Q ss_pred cceeeecCCCccceeec-------cceEEEEEcCCccccccc-c--ccCceecccCCceEEEEEeeCCCEEEEEe-----
Q 005646 205 EGERVRLNEEDAMFCSK-------VQRVKVYHCKKRSKELSA-L--YKGQEIQAHDGSILTMKFSPDGQYLASAG----- 269 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~-------d~~v~vw~~~~~~~~~~~-~--~~~~~l~~H~~~I~~l~fspdg~~Lasgs----- 269 (686)
...+|++++..+++|+. ++.|++|++......... + .....|.+|...|.+++++ ++.+++|.
T Consensus 18 ~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~ 95 (365)
T 4h5i_A 18 YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENST 95 (365)
T ss_dssp EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHH
T ss_pred EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCcc
Confidence 45778889999999864 346999998754432211 1 1123567899999888765 55677664
Q ss_pred ------CCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccccc
Q 005646 270 ------DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343 (686)
Q Consensus 270 ------~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (686)
.|+++|+|++........... .
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~--------------------------------~-------------------- 123 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLEFLT--------------------------------S-------------------- 123 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEEEEE--------------------------------E--------------------
T ss_pred EEEEecCCCcEEEEEecCCCceEEEee--------------------------------e--------------------
Confidence 467788888765431111000 0
Q ss_pred CCCeEEeccCCCCeeEEEeeCCC-EEEE--EECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 344 EKPLHEFHGHSGEILDLSWSKNN-YLLS--ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 344 ~~~~~~l~~h~~~V~~l~~s~~~-~L~s--~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
........+...+.+++|+||| +|++ ++.|++|+|||+.+++++..+.|...|++|+|+| ++++|++++.+ .++
T Consensus 124 -~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~ 200 (365)
T 4h5i_A 124 -VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-SLE 200 (365)
T ss_dssp -ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-CEE
T ss_pred -eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-eEE
Confidence 0011123456678999999999 6654 4579999999999999999999999999999999 99999999855 567
Q ss_pred EEecCCCcEEE---EeccCCcEEEEEEccCCCEEEEEecCC----cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 421 IWAVLSCHVVD---WVDIRQIVTAVCYRPDGQGGIVGSMMG----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 421 iwd~~~~~~~~---~~~~~~~V~~v~~spdg~~l~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
+|+..+++.+. ...|...|.+++|+|+|+++++++.++ .+++|++........... ....|...|++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~V~~~~ 276 (365)
T 4h5i_A 201 VISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK----QVTNRFKGITSMD 276 (365)
T ss_dssp EEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE----EEESSCSCEEEEE
T ss_pred EEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee----eecCCCCCeEeEE
Confidence 77777766542 235677899999999999999999887 588899876654332221 2344668899999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccc
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTI 557 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~ 557 (686)
|+| ++++|++++.|+.|+|||..+ .++|+|||++|||||.|++|+||++...........+.+
T Consensus 277 ~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~~~l 355 (365)
T 4h5i_A 277 VDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSMKQKI 355 (365)
T ss_dssp ECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC--------
T ss_pred ECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccCccccc
Confidence 999 899999999999999999653 478999999999999999999999976543333444555
Q ss_pred cccccc
Q 005646 558 RSLERF 563 (686)
Q Consensus 558 ~~~~~~ 563 (686)
..+|++
T Consensus 356 ~kl~~~ 361 (365)
T 4h5i_A 356 SKLEHH 361 (365)
T ss_dssp ------
T ss_pred eeeecc
Confidence 555543
No 67
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.7e-31 Score=283.25 Aligned_cols=261 Identities=18% Similarity=0.285 Sum_probs=217.6
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~ 286 (686)
..++++++.+++++.++.|+||++..... ...+.+|.+.|++++|+|++++|++|+.|+.|++||+.+++
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--- 172 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQ-------REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--- 172 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEE-------EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcce-------eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc---
Confidence 35678899999999999999998764322 24457899999999999999999999999999999998764
Q ss_pred eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC
Q 005646 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (686)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 366 (686)
.+..+.+|...|.+++|+|++
T Consensus 173 -----------------------------------------------------------~~~~~~~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 173 -----------------------------------------------------------NPRTLIGHRATVTDIAIIDRG 193 (420)
T ss_dssp -----------------------------------------------------------CCEEEECCSSCEEEEEEETTT
T ss_pred -----------------------------------------------------------CceEEcCCCCcEEEEEEcCCC
Confidence 345667899999999999999
Q ss_pred -EEEEEECCCcEEEEECCCCeeeeEee----CCCCeEEEEE---------------------eecCCCEEEEEEcCCcEE
Q 005646 367 -YLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHF---------------------NPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 367 -~L~s~s~Dg~V~iWd~~~~~~~~~~~----h~~~V~~v~f---------------------sp~~~~~l~sgs~Dg~V~ 420 (686)
+|++++.|++|++||+.+++++..+. |...|.+++| +| ++++|++|+.||.|+
T Consensus 194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVIT 272 (420)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEE
T ss_pred CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEE
Confidence 99999999999999999999998886 4556666655 56 788999999999999
Q ss_pred EEecCCCcEEEEe--ccCCcEEEEEEccCCC-EEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 421 IWAVLSCHVVDWV--DIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 421 iwd~~~~~~~~~~--~~~~~V~~v~~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
+||+++++.+... .|...|++++|+|+++ +|++|+.||.|++||+.+++.... .+ ...|...|+++.+.
T Consensus 273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-~~-----~~~~~~~v~~~~~~-- 344 (420)
T 3vl1_A 273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG-EF-----LINEGTPINNVYFA-- 344 (420)
T ss_dssp EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE-EE-----EESTTSCEEEEEEE--
T ss_pred EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh-hh-----hccCCCCceEEEeC--
Confidence 9999998876443 4678899999999999 999999999999999987653211 11 12255678888665
Q ss_pred CCCeEEEEeCCCcEEEEeCCc------------------------ceeEcCCCC---EEEEEeCCCcEEEEeCCC
Q 005646 498 DSSKVMVSCADSQVRILQGPN------------------------VIGKYKDGK---HIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~~~------------------------~~~~~~dg~---~l~sgs~Dg~V~iWd~~~ 545 (686)
++.+|++++.|+.|++|+..+ .++|+|+++ .|++++.+|.+.+|++++
T Consensus 345 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 345 AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 467999999999999999542 267889999 888888999999999875
No 68
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-32 Score=293.72 Aligned_cols=277 Identities=12% Similarity=0.159 Sum_probs=225.8
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
..+|++++.++++++.++.|+||++....... .....+.+|...|++++|+|+ +++|++++.|+.|++||+.+++.
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 148 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAI---NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE 148 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSCC---CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSS
T ss_pred EEEECCCCCeEEEEccCCeEEEeecccccccc---cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 35667788899999999999999987622111 123567789999999999998 89999999999999999987651
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
..... . ...+..+.+|...|.+++|+|
T Consensus 149 ~~~~~----~-------------------------------------------------~~~~~~~~~~~~~v~~~~~~~ 175 (416)
T 2pm9_A 149 SPSNY----T-------------------------------------------------PLTPGQSMSSVDEVISLAWNQ 175 (416)
T ss_dssp CTTTC----C-------------------------------------------------CBCCCCSCCSSCCCCEEEECS
T ss_pred ccccc----c-------------------------------------------------ccccccccCCCCCeeEEEeCC
Confidence 10000 0 001122356899999999999
Q ss_pred C-C-EEEEEECCCcEEEEECCCCeeeeEee-C------CCCeEEEEEeecCCCEEEEEEcCC---cEEEEecCCC-cEE-
Q 005646 365 N-N-YLLSASIDKTVRLWRVGNDHCLRVFP-H------SNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSC-HVV- 430 (686)
Q Consensus 365 ~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h------~~~V~~v~fsp~~~~~l~sgs~Dg---~V~iwd~~~~-~~~- 430 (686)
+ + +|++++.|+.|++||+.+++++..+. + ...|++++|+|.+..+|++++.|+ .|++||++++ ..+
T Consensus 176 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~ 255 (416)
T 2pm9_A 176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ 255 (416)
T ss_dssp SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE
Confidence 9 4 99999999999999999999988887 4 789999999993347999999999 9999999986 444
Q ss_pred EEe-ccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 431 DWV-DIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 431 ~~~-~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.+. .|...|++++|+| ++++|++++.||.|++||+.+++.... ...|...|++++|+|+++.+|++++.|
T Consensus 256 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~~l~s~~~d 327 (416)
T 2pm9_A 256 TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ--------FPARGNWCFKTKFAPEAPDLFACASFD 327 (416)
T ss_dssp CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE--------EECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee--------ecCCCCceEEEEECCCCCCEEEEEecC
Confidence 344 6889999999999 999999999999999999988765432 234667899999999545899999999
Q ss_pred CcEEEEeCCc--------------------------------------------------ceeEcCCCCEEEEEeCCCcE
Q 005646 509 SQVRILQGPN--------------------------------------------------VIGKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 509 ~~I~iwd~~~--------------------------------------------------~~~~~~dg~~l~sgs~Dg~V 538 (686)
+.|++|+..+ .++|+|+|++|++|+.|+.|
T Consensus 328 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v 407 (416)
T 2pm9_A 328 NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV 407 (416)
T ss_dssp SEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred CcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence 9999998532 35688999999999999999
Q ss_pred EEEeCCCC
Q 005646 539 YMWNCIGH 546 (686)
Q Consensus 539 ~iWd~~~~ 546 (686)
+||++.+.
T Consensus 408 ~~w~~~~~ 415 (416)
T 2pm9_A 408 SITNPKIS 415 (416)
T ss_dssp CCBCCCCC
T ss_pred EEEEeccC
Confidence 99999874
No 69
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.1e-31 Score=279.04 Aligned_cols=237 Identities=15% Similarity=0.246 Sum_probs=196.2
Q ss_pred ecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
+..|.++|++++|+|++++|++|+.|+.|++||+.+++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------------------- 42 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----------------------------------------- 42 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------------------------------
Confidence 455999999999999999999999999999999987641
Q ss_pred ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe---eCCCCeEEEE
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVH 401 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~---~h~~~V~~v~ 401 (686)
+.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++....+ .|...|++++
T Consensus 43 -------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 43 -------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 103 (372)
T ss_dssp -------------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred -------------------EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEE
Confidence 1345667899999999999999 9999999999999999998865554 3899999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcE----EEE-eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee---
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHV----VDW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD--- 473 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~----~~~-~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~--- 473 (686)
|+| ++++|++++.||.|++||+..+.. ... ..|...|++++|+|++++|++++.||.|++||+........
T Consensus 104 ~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 104 WAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 999 999999999999999999998762 222 45688999999999999999999999999999752110000
Q ss_pred -------eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEE
Q 005646 474 -------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVS 531 (686)
Q Consensus 474 -------~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~s 531 (686)
...........|...|++++|+| ++..|++++.|+.|++||.. ..++++|++++|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred cccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence 00001111235778899999999 78899999999999999964 24678889999988
Q ss_pred EeCCCcEEEEeCCC
Q 005646 532 AGEDSNVYMWNCIG 545 (686)
Q Consensus 532 gs~Dg~V~iWd~~~ 545 (686)
| .|+.|++|++.+
T Consensus 262 ~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 262 G-HDCFPVLFTYDS 274 (372)
T ss_dssp E-TTSSCEEEEEET
T ss_pred E-eCCeEEEEEccC
Confidence 8 999999999987
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.2e-31 Score=277.92 Aligned_cols=242 Identities=13% Similarity=0.235 Sum_probs=198.4
Q ss_pred ecccCCceEEEEEeeC----CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 246 IQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 246 l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
..+|.++|++++|+|+ ..++++++.++.|+|||+.+++.+..+..
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~------------------------------- 62 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS------------------------------- 62 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE-------------------------------
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee-------------------------------
Confidence 4579999999999984 44566666677999999987764333221
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC----C-EEEEEECCCcEEEEECCCCeeeeEee-CCC
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN----N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSN 395 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~----~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~ 395 (686)
+....|...|.+++|+|+ + +|++++.|++|++||+.+++++..+. |..
T Consensus 63 --------------------------~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 116 (366)
T 3k26_A 63 --------------------------YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN 116 (366)
T ss_dssp --------------------------EECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS
T ss_pred --------------------------ccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC
Confidence 111237789999999998 6 89999999999999999999999888 999
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe----ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~----~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
.|++++|+|.++++|++|+.||.|++||+++++.+... .|...|++++|+|++++|++++.||.|++||+.+++..
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 99999999977899999999999999999999887664 68899999999999999999999999999999876533
Q ss_pred eeeeE--------------------EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-------------
Q 005646 472 LDAEI--------------------CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN------------- 518 (686)
Q Consensus 472 ~~~~~--------------------~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------- 518 (686)
..... ........|...|.+++|+ +.++++++.|+.|++||..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCc
Confidence 21100 0011123377889999998 46999999999999999543
Q ss_pred ----------------ceeEcCC--CCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 ----------------VIGKYKD--GKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ----------------~~~~~~d--g~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++++|+ +++|++|+.||.|++||+.+++
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 2567778 9999999999999999998765
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.4e-32 Score=289.48 Aligned_cols=348 Identities=18% Similarity=0.218 Sum_probs=228.7
Q ss_pred eccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcce
Q 005646 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (686)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~ 298 (686)
..++.++||++.... ....+.+|.+.|++++|+| ++++||+|+.||.|++||+.++.....+.....
T Consensus 20 ~~~~~~~v~~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----- 87 (408)
T 4a11_B 20 RAESTRRVLGLELNK-------DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV----- 87 (408)
T ss_dssp HHHHHHHHHTEEECT-------TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE-----
T ss_pred eccCcceeeccccCc-------ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc-----
Confidence 445567777654322 1345678999999999999 999999999999999999988763322210000
Q ss_pred EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEEEECCCc
Q 005646 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKT 376 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s~s~Dg~ 376 (686)
. ........+|...|.+++|+| ++ +|++++.|+.
T Consensus 88 -----------------------~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 88 -----------------------C---------------------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp -----------------------E---------------------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred -----------------------c---------------------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 0 000111246999999999999 55 9999999999
Q ss_pred EEEEECCCCeeeeEeeCCCCeEEEEEeec--CCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCC-EEE
Q 005646 377 VRLWRVGNDHCLRVFPHSNYVTCVHFNPV--DDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQ-GGI 452 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~h~~~V~~v~fsp~--~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~-~l~ 452 (686)
|++||+.+++++..+.+...+.++.|+|. ++.++++++.||.|++||+++++.+ .+..|...|++++|+|+++ .++
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~ 203 (408)
T 4a11_B 124 LKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203 (408)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEE
T ss_pred EEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEE
Confidence 99999999999999999999999999983 2349999999999999999988766 4456889999999999998 488
Q ss_pred EEecCCcEEEEeCCCCeeeeee--------eEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCccee---
Q 005646 453 VGSMMGDCRFYNVSDNHLELDA--------EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG--- 521 (686)
Q Consensus 453 ~gs~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~--- 521 (686)
+|+.||.|++||++........ ..........|...|++++|+| ++..|++++.|+.|++||..+...
T Consensus 204 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLV 282 (408)
T ss_dssp EEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCCC
T ss_pred EEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCcccee
Confidence 9999999999999876422110 0001111246778999999999 778888888888888888664211
Q ss_pred -----------------EcCCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCC
Q 005646 522 -----------------KYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKE 584 (686)
Q Consensus 522 -----------------~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g 584 (686)
....+..+++++.|+.|++||+.+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~------------------------------------- 325 (408)
T 4a11_B 283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE------------------------------------- 325 (408)
T ss_dssp CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC-------------------------------------
T ss_pred ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc-------------------------------------
Confidence 11245566677778888888887754
Q ss_pred CcccccCCCC--CcccccCCCccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCc
Q 005646 585 PQLHVSDDDS--PENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWG 662 (686)
Q Consensus 585 ~~l~~~~~~~--~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 662 (686)
.+..+.+|. ...++|+|+ +..+++++.|+.+.+|+.+........ .... ......+...
T Consensus 326 -~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~------~~~~--------~~~~~~~~~~ 386 (408)
T 4a11_B 326 -QITMLKGHYKTVDCCVFQSN----FQELYSGSRDCNILAWVPSLYEPVPDD------DETT--------TKSQLNPAFE 386 (408)
T ss_dssp -EEEEECCCSSCEEEEEEETT----TTEEEEEETTSCEEEEEECC-----------------------------------
T ss_pred -ceeeeccCCCeEEEEEEcCC----CCEEEEECCCCeEEEEeCCCCCccCCC------CceE--------eccccccccc
Confidence 112222222 234567887 456778889999999997665432211 0000 0001122345
Q ss_pred eEEEEecCCCeEeEEeec
Q 005646 663 LVIVTAGWDGRIRSFLNY 680 (686)
Q Consensus 663 ~~ivT~~~DG~Ir~w~~~ 680 (686)
....+++.||.|++|.+.
T Consensus 387 ~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 387 DAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ------------------
T ss_pred eeecccCccCceeecCCc
Confidence 577789999999999874
No 72
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-31 Score=279.59 Aligned_cols=239 Identities=19% Similarity=0.280 Sum_probs=204.4
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.....
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--------------------------------------- 45 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------- 45 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------------------------
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------------------------
Confidence 56789999999999999999999999999999999974331
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--C-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYV 397 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V 397 (686)
+.+..+.+|...|.+++|+++ + +|++++.|++|++||+.+++ .+..+. |...|
T Consensus 46 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v 104 (379)
T 3jrp_A 46 ---------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 104 (379)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ---------------------eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcce
Confidence 234567789999999999876 6 99999999999999999997 555565 99999
Q ss_pred EEEEEeecC--CCEEEEEEcCCcEEEEecCCCc---EEEEeccCCcEEEEEEcc-------------CCCEEEEEecCCc
Q 005646 398 TCVHFNPVD--DNYFISGSIDGKVRIWAVLSCH---VVDWVDIRQIVTAVCYRP-------------DGQGGIVGSMMGD 459 (686)
Q Consensus 398 ~~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~~~~V~~v~~sp-------------dg~~l~~gs~dg~ 459 (686)
++++|+| + +.+|++++.||.|++||+++.. ......|...|++++|+| ++.+|++++.||.
T Consensus 105 ~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 183 (379)
T 3jrp_A 105 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183 (379)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred EEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence 9999999 7 8999999999999999998873 345667889999999999 6999999999999
Q ss_pred EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC--CCeEEEEeCCCcEEEEeCCc-------------------
Q 005646 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPN------------------- 518 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~--~~~l~~~s~D~~I~iwd~~~------------------- 518 (686)
|++||+.++...... ......|...|++++|+|+. +.+|++++.|+.|++||..+
T Consensus 184 i~i~d~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 259 (379)
T 3jrp_A 184 VKIWKYNSDAQTYVL----ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 259 (379)
T ss_dssp EEEEEEETTTTEEEE----EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred EEEEEecCCCcceee----EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcE
Confidence 999999866533221 11234577889999999943 89999999999999998643
Q ss_pred -ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 -VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 -~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++|+|++++|++++.||.|+||++....
T Consensus 260 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 260 WRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 25788999999999999999999998643
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-30 Score=270.08 Aligned_cols=290 Identities=17% Similarity=0.258 Sum_probs=228.9
Q ss_pred ecccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 005646 200 VDKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (686)
Q Consensus 200 ~~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vW 277 (686)
..|...+. +|+++++++++++.++.|+||++..... ...+.+|...|++++|+|++++|++++.||.|++|
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-------LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-------EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-------hhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 35666664 4567788999999999999999765432 35678899999999999999999999999999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec--cCCceEEEeCCccc-------cccCCCeE
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR--TSESACVVFPPKVF-------RILEKPLH 348 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~ 348 (686)
|+.+++.+..+. ....+.++.+.++. ...+..... .....+.+|+.... .....++.
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~-------------~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 167 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCG-------------NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH 167 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTS-------------SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCC-------------CEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence 999998877776 33334444443322 222111111 01122222222111 11224566
Q ss_pred EeccCCC--CeeEEEeeCCC-EEEEEECCCcEEEEECCC-CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 349 EFHGHSG--EILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 349 ~l~~h~~--~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~-~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
.+..|.. .+.+++|+|++ +|++++.|+.|++||+.+ .+.+..+. |...|++++|+| ++++|++++.||.|++||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEE
Confidence 7777877 99999999999 999999999999999998 78888887 999999999999 999999999999999999
Q ss_pred cCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC--------------cEEEEeCCCCeeeeeeeEEeeccccCCCCCe
Q 005646 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG--------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (686)
Q Consensus 424 ~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I 489 (686)
+++++.+....+...+..++|+|+++++++++.++ .+++||+.+++.... ...|...|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--------~~~~~~~v 318 (369)
T 3zwl_B 247 VSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR--------VQGHFGPL 318 (369)
T ss_dssp TTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE--------EECCSSCE
T ss_pred CCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh--------eecccCcE
Confidence 99999998888999999999999999999999988 899999988765432 23466889
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 490 TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++++|+| ++++|++++.||.|+||++..+.
T Consensus 319 ~~~~~s~----------------------------~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 319 NTVAISP----------------------------QGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECT----------------------------TSSEEEEEETTSEEEEEEECHHH
T ss_pred EEEEECC----------------------------CCCEEEEEcCCCeEEEEECcccc
Confidence 9999999 89999999999999999998754
No 74
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-30 Score=266.50 Aligned_cols=266 Identities=17% Similarity=0.296 Sum_probs=218.1
Q ss_pred ecccCcceeee-cCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 200 VDKQGEGERVR-LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 200 ~~~~~~~~~~s-~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
..|...+.++. ++++.+++++.|+.|+||+...... ...+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 15 ~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 15 KGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWL-------GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp CCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEE-------EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred hCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEE-------EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 35666665444 6778999999999999999854322 345678999999999999999999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+..... .+++..+.+|...|.
T Consensus 88 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~i~ 108 (313)
T 3odt_A 88 LFATSG-----------------------------------------------------------EDPLYTLIGHQGNVC 108 (313)
T ss_dssp TTCCTT-----------------------------------------------------------SCC-CEECCCSSCEE
T ss_pred eeecCC-----------------------------------------------------------CCcccchhhcccCEE
Confidence 865421 124566778999999
Q ss_pred EEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-cC
Q 005646 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-IR 436 (686)
Q Consensus 359 ~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~ 436 (686)
+++|. .++|++++.|+.|++|| .++.+..+. |...|.+++|+|.++++|++++.||.|++||.... ...+.. +.
T Consensus 109 ~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~ 184 (313)
T 3odt_A 109 SLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGIHN 184 (313)
T ss_dssp EEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSSCS
T ss_pred EEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEEeccCc
Confidence 99993 33999999999999999 667777776 99999999999988999999999999999994332 223333 88
Q ss_pred CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
..+++++|+|++. +++++.||.|++||+.+++.... ...|...|++++|+| ++ .+++++.|+.|++||.
T Consensus 185 ~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 185 DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT--------YEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE--------EECCSSCEEEEEECT-TS-CEEEEETTSEEEEECT
T ss_pred ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh--------hhcCCceEEEEEEec-CC-CEEEEecCCEEEEEEC
Confidence 8999999999998 99999999999999988765432 234668899999999 44 6999999999999996
Q ss_pred Cc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 517 PN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 517 ~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+ .++++|+++ +++++.||.|++|++.+++
T Consensus 254 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 254 ENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp TTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred CCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 53 367888998 6679999999999998865
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-30 Score=279.04 Aligned_cols=280 Identities=18% Similarity=0.317 Sum_probs=225.5
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceec-ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~ 284 (686)
+..+.++++.+++++.++.|+||+....... ..+. .|...|++++|+|++++|++|+.||.|++||+.+++.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 168 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVS-------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK 168 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEE-------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE
Confidence 4567788889999999999999998764321 1222 3899999999999999999999999999999999988
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+..+..+...+.++.+.. . .. ...+.+..+.+|+... ....+..+.+|.+.|.+++|+|
T Consensus 169 ~~~~~~~~~~v~~~~~~~----~-~l-------------~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 169 LRTMAGHQARVGCLSWNR----H-VL-------------SSGSRSGAIHHHDVRI---ANHQIGTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp EEEECCCSSCEEEEEEET----T-EE-------------EEEETTSEEEEEETTS---SSCEEEEEECCSSCEEEEEECT
T ss_pred EEEecCCCCceEEEEECC----C-EE-------------EEEcCCCCEEEEeccc---CcceeeEEcCCCCCeeEEEEcC
Confidence 888776665555554411 0 11 1122334444444332 1245778889999999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEE--cCCcEEEEecCCCcEEEEeccCCcEE
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVDIRQIVT 440 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~~~~~V~ 440 (686)
++ +|++++.|++|++||+.+++++..+. |...|++++|+|....++++|+ .|+.|++||+.+++.+....+...|+
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~ 307 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEE
T ss_pred CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 99 99999999999999999999988886 9999999999995557777766 79999999999999998888899999
Q ss_pred EEEEccCCCEEEE--EecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 441 AVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 441 ~v~~spdg~~l~~--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
+++|+|+++++++ |+.||.|++||+.++....... ...|...|.+++|+|
T Consensus 308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~------~~~h~~~v~~~~~s~---------------------- 359 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD------IPAHDTRVLYSALSP---------------------- 359 (401)
T ss_dssp EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE------EECCSSCCCEEEECT----------------------
T ss_pred EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE------ecCCCCCEEEEEECC----------------------
Confidence 9999999999999 4489999999998876543322 234668899999999
Q ss_pred ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++++|++++.||.|++|++.+++
T Consensus 360 ------dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 360 ------DGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ------TSSEEEEECTTSEEEEEECCC--
T ss_pred ------CCCEEEEEeCCCcEEEEECCCCc
Confidence 89999999999999999999876
No 76
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.4e-30 Score=293.77 Aligned_cols=388 Identities=12% Similarity=0.144 Sum_probs=275.3
Q ss_pred eeeec--CCCccceeeccceEEEEEcCCccc-cccccccCceecccCCceEEEEEeeCCCEEEEEeCC----CcEEEEEe
Q 005646 207 ERVRL--NEEDAMFCSKVQRVKVYHCKKRSK-ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD----GVVRLWQV 279 (686)
Q Consensus 207 ~~~s~--~~~~l~~g~~d~~v~vw~~~~~~~-~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I~vWd~ 279 (686)
.+|++ +++++++++.|+.|+||++..... ..........+.+|...|.+++|+|++++|++++.| +.|++||
T Consensus 70 ~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d- 148 (615)
T 1pgu_A 70 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD- 148 (615)
T ss_dssp EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-
T ss_pred EEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-
Confidence 55677 888999999999999999853200 000112235677899999999999999999999988 6888888
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCC---C
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG---E 356 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~ 356 (686)
.++.+..+..+...+.++.|.++... .+. ..+.+..+.+|+... .+.+..+.+|.. .
T Consensus 149 -~~~~~~~~~~~~~~v~~~~~~~~~~~-------------~l~--~~~~d~~v~vwd~~~----~~~~~~~~~~~~~~~~ 208 (615)
T 1pgu_A 149 -SGNSLGEVSGHSQRINACHLKQSRPM-------------RSM--TVGDDGSVVFYQGPP----FKFSASDRTHHKQGSF 208 (615)
T ss_dssp -TCCEEEECCSCSSCEEEEEECSSSSC-------------EEE--EEETTTEEEEEETTT----BEEEEEECSSSCTTCC
T ss_pred -CCCcceeeecCCccEEEEEECCCCCc-------------EEE--EEeCCCcEEEEeCCC----cceeeeecccCCCCce
Confidence 56666666665555555555443321 111 122334444454332 245677889999 9
Q ss_pred eeEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEe-----eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 357 ILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVF-----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 357 V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~-----~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
|.+++|+|+ + +|++++.|+.|++||+.+++++..+ .|...|++++|+ ++++|++++.||.|++||+++++.
T Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcE
Confidence 999999999 8 9999999999999999999999998 799999999999 889999999999999999999887
Q ss_pred EEEeccC-----CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeee-----------------------------
Q 005646 430 VDWVDIR-----QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE----------------------------- 475 (686)
Q Consensus 430 ~~~~~~~-----~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~----------------------------- 475 (686)
+...... ..+.++.|. +++++++++.+|.|++||+.+++......
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT
T ss_pred EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch
Confidence 7555433 567777775 78888888888888888877543321110
Q ss_pred -----------------------------EEeecc-----------------------------------------ccCC
Q 005646 476 -----------------------------ICVHSK-----------------------------------------KKAP 485 (686)
Q Consensus 476 -----------------------------~~~~~~-----------------------------------------~~~~ 485 (686)
+.+... ...+
T Consensus 366 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (615)
T 1pgu_A 366 SMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 445 (615)
T ss_dssp EEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred hhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeeccc
Confidence 000000 0013
Q ss_pred CCCeEEEEEeCCCCCeEEEEeC-CCcEEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 486 CKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~-D~~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
...+++++|+ +..+++++. |+.|++||..+ .++++|++++|++|+.||.|++||+.+++.
T Consensus 446 ~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 522 (615)
T 1pgu_A 446 NSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV 522 (615)
T ss_dssp SSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc
Confidence 3456666666 578999999 99999999753 367889999999999999999999988763
Q ss_pred CCcc---cccccccccccc----------C-CcEEEecCCCC-cCCCCCCC-CcccccCCCCCc--ccccCCCccccCcc
Q 005646 549 PAHD---QAKTIRSLERFT----------T-NASIAIPWCGL-KCGNAEKE-PQLHVSDDDSPE--NLAFAPARFSLGQE 610 (686)
Q Consensus 549 ~~~~---~~~~~~~~~~~~----------~-~~~v~~s~~g~-~~~~~~~g-~~l~~~~~~~~~--~~~~spd~~~~~~~ 610 (686)
.... +...+..+.-.. . ...+..+.+|. .+|+..++ ..+..+.+|... .++|+|| +.
T Consensus 523 ~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~- 597 (615)
T 1pgu_A 523 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP----ST- 597 (615)
T ss_dssp EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET----TE-
T ss_pred eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCC----CC-
Confidence 2211 111222221111 1 12222223332 68999988 677777776544 5678999 45
Q ss_pred ccccCCCCCCCCCCCC
Q 005646 611 YVFESFPKGCATWPEE 626 (686)
Q Consensus 611 ~~~~s~d~~~~~W~~~ 626 (686)
+++.+.|+.+.+|+.+
T Consensus 598 l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 598 LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEETTSCEEEEEEC
T ss_pred eEEecCCceEEEEeee
Confidence 7788999999999854
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.98 E-value=2.3e-29 Score=274.97 Aligned_cols=316 Identities=14% Similarity=0.251 Sum_probs=247.9
Q ss_pred HHHhHHhhcc-cceeeecccCc-ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCC
Q 005646 185 VKKRWFSRLR-SLACVVDKQGE-GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG 262 (686)
Q Consensus 185 ~~~~~~~~~~-~~~~~~~~~~~-~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg 262 (686)
....|...-. .......|... +.+++++++.+++|+.|+.|+||+...... ...+.+|.+.|++++|+ +
T Consensus 99 ~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~--~ 169 (445)
T 2ovr_B 99 IDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC-------LRTLVGHTGGVWSSQMR--D 169 (445)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-------EEECCCCSSCEEEEEEE--T
T ss_pred hhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcE-------EEEEcCCCCCEEEEEec--C
Confidence 3445554332 23333445554 467899999999999999999999865432 34577899999999998 6
Q ss_pred CEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccc
Q 005646 263 QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI 342 (686)
Q Consensus 263 ~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (686)
++|++|+.||+|++||+.+++.+..+..+...+.++.+... .. +..+.+..+.+|+...
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-----~l-------------~s~s~dg~i~~wd~~~--- 228 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-----RV-------------VSGSRDATLRVWDIET--- 228 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-----EE-------------EEEETTSEEEEEESSS---
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-----EE-------------EEEeCCCEEEEEECCC---
Confidence 69999999999999999999988888766665555544210 01 1122334444444332
Q ss_pred cCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEE
Q 005646 343 LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (686)
Q Consensus 343 ~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~ 420 (686)
.+.+..+.+|...|.+++| ++ +|++++.|+.|++||+.+++++..+. |...|++++| ++.++++|+.||.|+
T Consensus 229 -~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~ 302 (445)
T 2ovr_B 229 -GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIR 302 (445)
T ss_dssp -CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEE
T ss_pred -CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEE
Confidence 3467788899999999999 45 99999999999999999999999988 9999999999 678999999999999
Q ss_pred EEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 421 IWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 421 iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
+||+++++.+ .+..|...+.++.+ +++++++|+.||.|++||+.+++.... ......|...|++++|++
T Consensus 303 i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~v~~~~~~~--- 372 (445)
T 2ovr_B 303 VWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQT-----LQGPNKHQSAVTCLQFNK--- 372 (445)
T ss_dssp EEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-----ECSTTSCSSCEEEEEECS---
T ss_pred EEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEE-----EccCCCCCCCEEEEEECC---
Confidence 9999999877 44567778887776 567999999999999999988765431 112234778899999965
Q ss_pred CeEEEEeCCCcEEEEeCCc--------------------ceeEcCCCCEEEEEeCCCc----EEEEeCCCC
Q 005646 500 SKVMVSCADSQVRILQGPN--------------------VIGKYKDGKHIVSAGEDSN----VYMWNCIGH 546 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~~--------------------~~~~~~dg~~l~sgs~Dg~----V~iWd~~~~ 546 (686)
.++++++.|+.|++||..+ .++++|++.+|++|+.||+ |+|||+...
T Consensus 373 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 373 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 7999999999999999653 2568889999999999998 999999864
No 78
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=1.7e-31 Score=278.20 Aligned_cols=261 Identities=17% Similarity=0.251 Sum_probs=197.4
Q ss_pred cccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEE
Q 005646 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~v 276 (686)
.|...+ .+|+++++++++|+.|+.|+||++...... ....+.+|.+.|++++|+| ++++|+||+.|++|+|
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-----~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-----LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-----EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-----EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 345555 456788899999999999999998653221 1356789999999999986 4899999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.++.. ..+..+.+|...
T Consensus 86 Wd~~~~~~------------------------------------------------------------~~~~~~~~h~~~ 105 (316)
T 3bg1_A 86 WREENGTW------------------------------------------------------------EKSHEHAGHDSS 105 (316)
T ss_dssp ECCSSSCC------------------------------------------------------------CEEEEECCCSSC
T ss_pred EECCCCcc------------------------------------------------------------eEEEEccCCCCc
Confidence 99876531 134456789999
Q ss_pred eeEEEeeCC--C-EEEEEECCCcEEEEECCCCee---eeEee-CCCCeEEEEEeecC-----------------CCEEEE
Q 005646 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHC---LRVFP-HSNYVTCVHFNPVD-----------------DNYFIS 412 (686)
Q Consensus 357 V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~---~~~~~-h~~~V~~v~fsp~~-----------------~~~l~s 412 (686)
|.+++|+|+ + +|++++.|++|++||+..+.. ...+. |...|.+++|+| + +.+|++
T Consensus 106 V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 106 VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp CCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEEC
T ss_pred eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEE
Confidence 999999997 6 899999999999999987632 23333 889999999999 5 468999
Q ss_pred EEcCCcEEEEecCCC---cE-EEEeccCCcEEEEEEccCC----CEEEEEecCCcEEEEeCCCCeee-eeeeEEeecccc
Q 005646 413 GSIDGKVRIWAVLSC---HV-VDWVDIRQIVTAVCYRPDG----QGGIVGSMMGDCRFYNVSDNHLE-LDAEICVHSKKK 483 (686)
Q Consensus 413 gs~Dg~V~iwd~~~~---~~-~~~~~~~~~V~~v~~spdg----~~l~~gs~dg~i~iwd~~~~~~~-~~~~~~~~~~~~ 483 (686)
|+.|++|++||++.. +. ..+..|...|.+++|+|++ ++|++|+.||+|++|++.+.... .... . ..
T Consensus 185 gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~-~----~~ 259 (316)
T 3bg1_A 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK-L----LH 259 (316)
T ss_dssp CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCC-E----EE
T ss_pred ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhh-h----hh
Confidence 999999999999754 22 2456788999999999987 88999999999999998763110 0000 0 12
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----ceeEcCCCCEEEEEe
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-----VIGKYKDGKHIVSAG 533 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-----~~~~~~dg~~l~sgs 533 (686)
.|...|.+++|+| ++.+|++++.|+.|++|+... .+....+++..++++
T Consensus 260 ~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~~~~~~~~~~ 313 (316)
T 3bg1_A 260 KFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSAS 313 (316)
T ss_dssp ECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECTTSCEEEEEECC---------
T ss_pred cCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECCCCcEEEeeeccCCCCceeee
Confidence 3457899999999 789999999999999999652 334445555555543
No 79
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.98 E-value=2.9e-30 Score=283.37 Aligned_cols=306 Identities=18% Similarity=0.265 Sum_probs=230.0
Q ss_pred ceecccCCce-EEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSI-LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I-~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
..+.+|...| .++.| ++++|++|+.||+|++||+.+++
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~--------------------------------------- 153 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK--------------------------------------- 153 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE---------------------------------------
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc---------------------------------------
Confidence 4678898885 55555 57899999999999999998775
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEE
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~ 401 (686)
.+..+.+|.+.|.+++|+++++|++|+.|++|++||+.+++++..+. |...|++++
T Consensus 154 -----------------------~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 154 -----------------------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210 (464)
T ss_dssp -----------------------EEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred -----------------------EEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence 34556789999999999999999999999999999999999999998 999999999
Q ss_pred Eee-cCCCEEEEEEcCCcEEEEecCCCcE------------------------EEEeccCCcEEEEEEccCCCEEEEEec
Q 005646 402 FNP-VDDNYFISGSIDGKVRIWAVLSCHV------------------------VDWVDIRQIVTAVCYRPDGQGGIVGSM 456 (686)
Q Consensus 402 fsp-~~~~~l~sgs~Dg~V~iwd~~~~~~------------------------~~~~~~~~~V~~v~~spdg~~l~~gs~ 456 (686)
|+| .++++|++|+.||+|++||+++... .....|...|.++ +++++++++|+.
T Consensus 211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 996 2678999999999999999987652 2445667777666 688999999999
Q ss_pred CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce-------------eEc
Q 005646 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI-------------GKY 523 (686)
Q Consensus 457 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~-------------~~~ 523 (686)
||.|++||+.+++.... ...|...|++++|+| ++..+++++.|+.|++||..+.. ++.
T Consensus 289 d~~i~vwd~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 359 (464)
T 3v7d_B 289 DNTLIVWDVAQMKCLYI--------LSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359 (464)
T ss_dssp TSCEEEEETTTTEEEEE--------ECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCeEEEEECCCCcEEEE--------ecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 99999999998775432 245678899999999 88999999999999999976431 122
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCC
Q 005646 524 KDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 603 (686)
Q Consensus 524 ~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd 603 (686)
.++++|++|+.||.|++||+.++.. ..... ..+....++|+|+
T Consensus 360 ~~~~~l~s~s~dg~v~vwd~~~~~~--------~~~~~-----------------------------~~~~~~~~~~~~~ 402 (464)
T 3v7d_B 360 LSDKFLVSAAADGSIRGWDANDYSR--------KFSYH-----------------------------HTNLSAITTFYVS 402 (464)
T ss_dssp ECSSEEEEEETTSEEEEEETTTCCE--------EEEEE-----------------------------CTTCCCEEEEEEC
T ss_pred EcCCEEEEEeCCCcEEEEECCCCce--------eeeec-----------------------------CCCCccEEEEEeC
Confidence 2689999999999999999987541 11110 0112233456666
Q ss_pred ccccCccccccCCCCCCCCCCCCcCCCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCeEeEEe
Q 005646 604 RFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 678 (686)
Q Consensus 604 ~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~Ir~w~ 678 (686)
+..+++++ ++.+.+|+.++.......... + ......+.+ + ...++++++.||.+.+|-
T Consensus 403 ----~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~------~----~~~v~~v~~-~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 403 ----DNILVSGS-ENQFNIYNLRSGKLVHANILK------D----ADQIWSVNF-K-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp ----SSEEEEEE-TTEEEEEETTTCCEEESCTTT------T----CSEEEEEEE-E-TTEEEEEEEETTEEEEEE
T ss_pred ----CCEEEEec-CCeEEEEECCCCcEEehhhcc------C----CCcEEEEEe-c-CCEEEEEEEeCCeEEEEE
Confidence 33444444 888999997765533221001 0 011222222 2 366777778888777663
No 80
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=4.6e-30 Score=268.33 Aligned_cols=239 Identities=19% Similarity=0.306 Sum_probs=201.2
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+.+|.+.|++|+|+|++++||+|+.||.|+|||+.++....
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------------- 47 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW------------------------------------- 47 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------------------------
Confidence 4577899999999999999999999999999999998654110
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC--CC-EEEEEECCCcEEEEECCCC---------eeeeEe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--NN-YLLSASIDKTVRLWRVGND---------HCLRVF 391 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~~-~L~s~s~Dg~V~iWd~~~~---------~~~~~~ 391 (686)
+.+..+.+|...|.+++|+| ++ +|++++.|++|++||+.++ +++..+
T Consensus 48 ---------------------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 106 (351)
T 3f3f_A 48 ---------------------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL 106 (351)
T ss_dssp ---------------------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred ---------------------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence 13456678999999999999 46 9999999999999999887 556666
Q ss_pred e-CCCCeEEEEEeecC--CCEEEEEEcCCcEEEEecCCCcEEEE--------------eccCCcEEEEEEccC---CCEE
Q 005646 392 P-HSNYVTCVHFNPVD--DNYFISGSIDGKVRIWAVLSCHVVDW--------------VDIRQIVTAVCYRPD---GQGG 451 (686)
Q Consensus 392 ~-h~~~V~~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~--------------~~~~~~V~~v~~spd---g~~l 451 (686)
. |...|++++|+| + +++|++++.||.|++||+++++.+.. ..+...+.+++|+|+ +.++
T Consensus 107 ~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 185 (351)
T 3f3f_A 107 NDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185 (351)
T ss_dssp CCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred cccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence 5 999999999999 7 99999999999999999988764311 146678999999997 9999
Q ss_pred EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC---CeEEEEeCCCcEEEEeCCc----------
Q 005646 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPN---------- 518 (686)
Q Consensus 452 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~---~~l~~~s~D~~I~iwd~~~---------- 518 (686)
++++.++.+.+|+...++.... .....|...|++++|+|+.+ .+|++++.|+.|++||..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 259 (351)
T 3f3f_A 186 AVSALEQAIIYQRGKDGKLHVA------AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES 259 (351)
T ss_dssp EEEETTEEEEEEECTTSCEEEE------EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------
T ss_pred EEecCCCcEEEEccCCCceeee------eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCc
Confidence 9999999998888877654321 12445778999999999432 7999999999999998543
Q ss_pred ---------------------------------------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 ---------------------------------------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ---------------------------------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++|+|++++|++|+.||.|+||++.+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 260 LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 26788899999999999999999999875
No 81
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.7e-29 Score=272.36 Aligned_cols=271 Identities=20% Similarity=0.355 Sum_probs=212.5
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
.+++.+.|++|+||+....... ....+.+|...|++|+|+|+|++||+|+.||+|+|||+.+++.+..+..+...
T Consensus 117 n~lAvgld~tV~lWd~~tg~~~-----~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~ 191 (420)
T 4gga_A 117 NVLAVALDNSVYLWSASSGDIL-----QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 191 (420)
T ss_dssp SEEEEEETTEEEEEETTTCCEE-----EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEeCCEEEEEECCCCCEE-----EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc
Confidence 3444556999999998764321 11235578899999999999999999999999999999999988888766554
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~ 373 (686)
..++.+.. . . ....+.+..+.+++... ....+..+.+|...+..+.|+|++ +|++++.
T Consensus 192 v~~~s~~~-------------~--~---l~sgs~d~~i~~~d~~~---~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 192 VGSLSWNS-------------Y--I---LSSGSRSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAPDGRHLASGGN 250 (420)
T ss_dssp EEEEEEET-------------T--E---EEEEETTSEEEEEETTS---SSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEeeCC-------------C--E---EEEEeCCCceeEeeecc---cceeeEEecccccceeeeeecCCCCeeeeeec
Confidence 44333211 0 0 01122233333333221 124567788999999999999999 9999999
Q ss_pred CCcEEEEECCCCee----eeEee-CCCCeEEEEEeecCCCEEEEE--EcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc
Q 005646 374 DKTVRLWRVGNDHC----LRVFP-HSNYVTCVHFNPVDDNYFISG--SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP 446 (686)
Q Consensus 374 Dg~V~iWd~~~~~~----~~~~~-h~~~V~~v~fsp~~~~~l~sg--s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp 446 (686)
|+.|++|+..+++. +.... |...|.+++|+|.+..+++++ +.|++|++||+.+++++........+.++.|+|
T Consensus 251 D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~ 330 (420)
T 4gga_A 251 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 330 (420)
T ss_dssp TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEET
T ss_pred cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecC
Confidence 99999999987753 33333 899999999999777777765 479999999999999998888889999999999
Q ss_pred CCCEEEEEe--cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcC
Q 005646 447 DGQGGIVGS--MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524 (686)
Q Consensus 447 dg~~l~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~ 524 (686)
+++.+++++ .||.|+|||+.++++... ..+|...|++++|+|
T Consensus 331 ~~~~lv~~sg~~d~~I~iwd~~~~~~v~~--------l~gH~~~V~~l~~sp---------------------------- 374 (420)
T 4gga_A 331 HYKELISGHGFAQNQLVIWKYPTMAKVAE--------LKGHTSRVLSLTMSP---------------------------- 374 (420)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT----------------------------
T ss_pred CCCeEEEEEecCCCEEEEEECCCCcEEEE--------EcCCCCCEEEEEEcC----------------------------
Confidence 999998865 689999999998775432 346788999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 525 DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 525 dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
||++|+||+.|++|+|||+....
T Consensus 375 dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 375 DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp TSSCEEEEETTTEEEEECCSCSS
T ss_pred CCCEEEEEecCCeEEEEECCCCC
Confidence 89999999999999999998754
No 82
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.3e-29 Score=277.02 Aligned_cols=312 Identities=18% Similarity=0.318 Sum_probs=234.1
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~---------------------------------------- 150 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK---------------------------------------- 150 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC----------------------------------------
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc----------------------------------------
Confidence 457889987643 355679999999999999999998765
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~f 402 (686)
.+..+.+|.+.|.+++|+ +++|++++.|++|++||+.+++++..+. |...|.+++|
T Consensus 151 ----------------------~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 207 (445)
T 2ovr_B 151 ----------------------CLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207 (445)
T ss_dssp ----------------------EEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ----------------------EEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEe
Confidence 345566899999999998 3499999999999999999999999887 9999999999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
+ +++|++|+.||+|++||+.+++.+ .+..|...|++++| +++++++|+.||.|++||+.+++....
T Consensus 208 ~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-------- 274 (445)
T 2ovr_B 208 H---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT-------- 274 (445)
T ss_dssp E---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE--------
T ss_pred c---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE--------
Confidence 5 478999999999999999998876 45578899999999 788999999999999999988765432
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-------------eeEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-------------IGKYKDGKHIVSAGEDSNVYMWNCIGHEE 548 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~ 548 (686)
...|...|.++.| ++..+++++.|+.|++||..+. .++.+++++|++|+.||.|++||+.+++
T Consensus 275 ~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~- 350 (445)
T 2ovr_B 275 LQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ- 350 (445)
T ss_dssp ECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC-
T ss_pred ecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc-
Confidence 2356688999999 5689999999999999997643 2344488999999999999999998765
Q ss_pred CCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCcC
Q 005646 549 PAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKL 628 (686)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~~ 628 (686)
.+..+.... .+...+.++..+ +..+++++.|+.+.+|+..+.
T Consensus 351 -------~~~~~~~~~---------------------------~~~~~v~~~~~~----~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 351 -------CLQTLQGPN---------------------------KHQSAVTCLQFN----KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp -------EEEEECSTT---------------------------SCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTC
T ss_pred -------EEEEEccCC---------------------------CCCCCEEEEEEC----CCEEEEEeCCCeEEEEECCCC
Confidence 122221100 011111111112 235667788999999997765
Q ss_pred CCccccccccccchhhHHhhhcccccCccCCCCceEEEEecCCCe----EeEEeecC
Q 005646 629 PALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGR----IRSFLNYG 681 (686)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT~~~DG~----Ir~w~~~g 681 (686)
.....+.... ...+ .....++ .+++.|.+|++|+.||+ |.+|.-..
T Consensus 393 ~~~~~~~~~~--~~~~----~~~v~~~-~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 393 EFIRNLVTLE--SGGS----GGVVWRI-RASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CEEEEEEECT--TGGG----TCEEEEE-EECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ceeeeeeccc--cCCC----CceEEEE-EecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 5333221000 0001 0112222 34566999999999998 99997544
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.2e-30 Score=279.02 Aligned_cols=264 Identities=16% Similarity=0.233 Sum_probs=215.0
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee-CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCC
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 294 (686)
+++++.+|.|+||++.+..... .....+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++......
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~------ 120 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL------ 120 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB------
T ss_pred EEEEcCCCEEEEEECccCCCCC---CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc------
Confidence 3457889999999986543221 22345788999999999999 9999999999999999999876422110
Q ss_pred CcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEE
Q 005646 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSAS 372 (686)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s 372 (686)
..++..+.+|...|.+++|+|++ +|++++
T Consensus 121 -------------------------------------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 121 -------------------------------------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp -------------------------------------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred -------------------------------------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence 13567788999999999999996 899999
Q ss_pred CCCcEEEEECCCCeeeeEe--e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCc-EEEEEEcc
Q 005646 373 IDKTVRLWRVGNDHCLRVF--P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQI-VTAVCYRP 446 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~--~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~-V~~v~~sp 446 (686)
.|++|++||+.+++++..+ . |...|++++|+| ++++|++++.||.|++||+++++.+... .|... +.+++|+|
T Consensus 152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (402)
T 2aq5_A 152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230 (402)
T ss_dssp TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS
T ss_pred CCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC
Confidence 9999999999999999988 4 999999999999 9999999999999999999999887554 55554 89999999
Q ss_pred CCCEEEEE---ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE-EEeCCCcEEEEeCCc----
Q 005646 447 DGQGGIVG---SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM-VSCADSQVRILQGPN---- 518 (686)
Q Consensus 447 dg~~l~~g---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~-~~s~D~~I~iwd~~~---- 518 (686)
++++|++| +.|+.|++||+.+........ ...+...+.+++|+| ++..|+ +++.|+.|++||..+
T Consensus 231 ~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~s~-~~~~l~~~g~~dg~i~i~d~~~~~~~ 303 (402)
T 2aq5_A 231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQ------ELDTSSGVLLPFFDP-DTNIVYLCGKGDSSIRYFEITSEAPF 303 (402)
T ss_dssp TTEEEEEEECTTCCEEEEEEETTBCSSCSEEE------ECCCCSSCEEEEEET-TTTEEEEEETTCSCEEEEEECSSTTC
T ss_pred CCcEEEEeccCCCCceEEEEcCccccCCceEE------eccCCCceeEEEEcC-CCCEEEEEEcCCCeEEEEEecCCCcc
Confidence 99999999 799999999998765422111 123456799999999 666665 566799999998542
Q ss_pred --------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 --------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 --------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++|+|++.++++ .|+.+++|++.++.
T Consensus 304 ~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 304 LHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred eEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 3567888888875 56799999998754
No 84
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=273.02 Aligned_cols=293 Identities=20% Similarity=0.238 Sum_probs=216.1
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
...|+++++++++++.++.|++|+.... ....+.+|...|++++|+|++++|++++.|+.|++||+.+++.+
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWNKTGA--------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCC--------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 3567788889999999999999983221 12457789999999999999999999999999999999999988
Q ss_pred eeeccCCCCCcceEEe--ecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 286 TEVDIPEIDPSCIYFT--VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
..+..+......+... ......+..+.+.+.... +....+..+.+|+... .+++..+.+|...|.+++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~i~~~d~~~----~~~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF----VIPGPKGAIFVYQITE----KTPTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEE----EEECGGGCEEEEETTC----SSCSEEECCCSSCEEEEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEE----EEEcCCCeEEEEEcCC----CceeeeeccCCCceEEEEEC
Confidence 8877665441100000 000000222222222211 1122233444444432 25677888999999999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE-EeccCCcEE
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVT 440 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~ 440 (686)
|++ +|++++.|+.|++||+.+++++..+. |...|++++|+| ++ +|++++.||.|++||+++++.+. ...+...|+
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 999 99999999999999999999888887 999999999999 77 99999999999999999988774 445788999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeee------------eEEeeccccCCCC--CeEEEEEeCCCCCeEEEEe
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA------------EICVHSKKKAPCK--RITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~--~I~~l~fsp~~~~~l~~~s 506 (686)
+++|+|++++|++++.||.|++||+.+....... ..........|.. .|++++|+|
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---------- 404 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC---------- 404 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT----------
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC----------
Confidence 9999999999999999999999999765511000 0001111233433 788888888
Q ss_pred CCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 507 ADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 507 ~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
++++|++++.||.|+||++.
T Consensus 405 ------------------~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 ------------------AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------------------TSSEEEEEESSSCCEEEECC
T ss_pred ------------------CCceEEEEecCceEEEEeec
Confidence 78888888888888888875
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.2e-29 Score=276.50 Aligned_cols=259 Identities=18% Similarity=0.389 Sum_probs=212.9
Q ss_pred cccCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee
Q 005646 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (686)
Q Consensus 201 ~~~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~ 280 (686)
.+...+.+++++++.+++|+.|+.|++|+...... ...+.+|.+.|++++| ++++|++|+.||+|++||+.
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC-------KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE-------EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE-------EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 44556888999999999999999999999765432 3567889999999999 78899999999999999998
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
+++ .+..+.+|...|.++
T Consensus 202 ~~~--------------------------------------------------------------~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 202 TGE--------------------------------------------------------------MLNTLIHHCEAVLHL 219 (435)
T ss_dssp SCC--------------------------------------------------------------EEEEECCCCSCEEEE
T ss_pred CCc--------------------------------------------------------------EEEEEcCCCCcEEEE
Confidence 765 345566799999999
Q ss_pred EeeCCCEEEEEECCCcEEEEECCCCeee---eEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEecc
Q 005646 361 SWSKNNYLLSASIDKTVRLWRVGNDHCL---RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (686)
Q Consensus 361 ~~s~~~~L~s~s~Dg~V~iWd~~~~~~~---~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~ 435 (686)
+|++ +.|++++.|++|++||+.++..+ ..+. |...|++++| ++++|++|+.||.|++||+++++.+ .+..|
T Consensus 220 ~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 295 (435)
T 1p22_A 220 RFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295 (435)
T ss_dssp ECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC
Confidence 9974 49999999999999999988765 3343 9999999999 5689999999999999999999877 45568
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
...|.+++| +++++++|+.||.|++||+.+++.... ...|...|++++| ++..|++++.|+.|++||
T Consensus 296 ~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 296 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV--------LEGHEELVRCIRF---DNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE--------ECCCSSCEEEEEC---CSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE--------EeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEE
Confidence 889999998 567999999999999999998765432 2357788999999 458999999999999999
Q ss_pred CCcc-----------e-----------eEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 516 GPNV-----------I-----------GKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 516 ~~~~-----------~-----------~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+. + +...++++|++|+.||.|+|||+.+..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 363 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp HHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred CCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 5321 1 111289999999999999999998865
No 86
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=7.8e-30 Score=273.40 Aligned_cols=238 Identities=14% Similarity=0.231 Sum_probs=195.6
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+.+.+|.+.|++++|+| ++|++|+.||.|+||++.+++....
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~------------------------------------ 51 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP------------------------------------ 51 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG------------------------------------
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC------------------------------------
Confidence 45788999999999998 7999999999999999987641110
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC----C----EEEEEECCCcEEEEECCCCee-----eeE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN----N----YLLSASIDKTVRLWRVGNDHC-----LRV 390 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~----~----~L~s~s~Dg~V~iWd~~~~~~-----~~~ 390 (686)
...+..+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++. +..
T Consensus 52 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 52 --------------------KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp --------------------GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred --------------------CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee
Confidence 0245667789999999999998 5 889999999999999998886 666
Q ss_pred ee-C-----CCCeEEEEEe----ecCCCE-EEEEEcCCcEEEEecCC------CcEE------EE-------eccCCcEE
Q 005646 391 FP-H-----SNYVTCVHFN----PVDDNY-FISGSIDGKVRIWAVLS------CHVV------DW-------VDIRQIVT 440 (686)
Q Consensus 391 ~~-h-----~~~V~~v~fs----p~~~~~-l~sgs~Dg~V~iwd~~~------~~~~------~~-------~~~~~~V~ 440 (686)
+. | ...|++++|+ | ++++ |++++.||.|++||+.+ ++.+ .+ ..+...|+
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 190 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 190 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCC
T ss_pred ecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCce
Confidence 66 6 5999999999 9 8999 99999999999999998 5433 33 23678899
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC---CCCeEEEEEeCCCCCeEEEEeCC---CcEEEE
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCAD---SQVRIL 514 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~I~~l~fsp~~~~~l~~~s~D---~~I~iw 514 (686)
+++|+|++ ++++++.||.|++||+.+++...... . ...| ...|.+++|+| ++.+|++++.| +.|++|
T Consensus 191 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~---~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 191 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFE--S---QHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp EEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE--C---CC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEE
T ss_pred EEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe--c---cccccccCCccceEEECC-CCCEEEEEecCCCCceEEEE
Confidence 99999999 99999999999999999876543211 1 1125 67899999999 78999999999 999999
Q ss_pred eCCc----------------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 515 QGPN----------------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 515 d~~~----------------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|..+ .++++|++++|++++.||.|+|||+.+++
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 9531 35678899999999999999999998764
No 87
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=6.9e-30 Score=278.37 Aligned_cols=308 Identities=15% Similarity=0.222 Sum_probs=213.7
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccc----cccccccCceecccC------------CceEEEEEeeCC--CEEEE
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSK----ELSALYKGQEIQAHD------------GSILTMKFSPDG--QYLAS 267 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~----~~~~~~~~~~l~~H~------------~~I~~l~fspdg--~~Las 267 (686)
..+|+++++++++|+.|+.|+||++..... ..........+++|. +.|++++|+|++ .+|++
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s 112 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence 356778889999999999999999876442 111112245678898 889999999998 89999
Q ss_pred EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCe
Q 005646 268 AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (686)
Q Consensus 268 gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (686)
++.|++|++||+.++...............+. .......+..-...+.. +.....+.
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~----------------------~~~~~~~~ 169 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYR-DPTTVTTLRVPVFRPMD----------------------LMVEASPR 169 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSCC---------CCCCCSCCCCEEEEEE----------------------EEEEEEEE
T ss_pred eCCCCeEEEEecccccCCcceecccCcccccc-CcccccceEeccccchh----------------------eeeeccce
Confidence 99999999999987664322111000000000 00000000000000000 00001223
Q ss_pred EEe-ccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECC-CCeeeeEe--------eCCCCeEEEEEeecCC-CEEEEEEc
Q 005646 348 HEF-HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG-NDHCLRVF--------PHSNYVTCVHFNPVDD-NYFISGSI 415 (686)
Q Consensus 348 ~~l-~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~-~~~~~~~~--------~h~~~V~~v~fsp~~~-~~l~sgs~ 415 (686)
..+ .+|...|.+++|+|++ +|+++ .|++|++||+. .++++..+ .|...|++++|+| ++ ++|++|+.
T Consensus 170 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~ 247 (447)
T 3dw8_B 170 RIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSS 247 (447)
T ss_dssp EEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEET
T ss_pred EEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeC
Confidence 343 6899999999999999 88888 89999999999 45555533 3899999999999 76 99999999
Q ss_pred CCcEEEEecCCCcE-----EEEeccCC------------cEEEEEEccCCCEEEEEecCCcEEEEeCCC-CeeeeeeeEE
Q 005646 416 DGKVRIWAVLSCHV-----VDWVDIRQ------------IVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHLELDAEIC 477 (686)
Q Consensus 416 Dg~V~iwd~~~~~~-----~~~~~~~~------------~V~~v~~spdg~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~ 477 (686)
||+|++||+++++. ..+..+.. .|++++|+|+|++|++++. |.|++||+.. ++..... .
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~--~ 324 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY--Q 324 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE--E
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee--e
Confidence 99999999998875 34444544 8999999999999999999 9999999986 4433211 1
Q ss_pred eeccccC------CCC---CeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc------------------------------
Q 005646 478 VHSKKKA------PCK---RITGFQFLPQDSSKVMVSCADSQVRILQGPN------------------------------ 518 (686)
Q Consensus 478 ~~~~~~~------~~~---~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------------------------ 518 (686)
.+..... ... .+..++|+| ++.+|++++.|+.|++||..+
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKR 403 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCC
T ss_pred ccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCc
Confidence 1111000 001 134599999 788999999999999999642
Q ss_pred -----------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 519 -----------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 519 -----------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.++|+|++++||+++.++ +++|.-
T Consensus 404 ~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 404 KKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 167899999999998875 888864
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=4.9e-29 Score=270.37 Aligned_cols=227 Identities=19% Similarity=0.243 Sum_probs=186.8
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
.++.|+||++ ++||+|. |++|+|||+.+++....
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-------------------------------------------- 140 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-------------------------------------------- 140 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE--------------------------------------------
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE--------------------------------------------
Confidence 3667999975 5787765 89999999998874332
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCE
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~ 409 (686)
..+.+|...|++|+|+|+| +|++|+.|++|+|||+.+++++..+. |...|.++.++ +.+
T Consensus 141 ----------------~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~ 201 (420)
T 4gga_A 141 ----------------LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYI 201 (420)
T ss_dssp ----------------EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTE
T ss_pred ----------------EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCE
Confidence 2345688899999999999 99999999999999999999999888 99999998875 579
Q ss_pred EEEEEcCCcEEEEecCCCcE--EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 410 FISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 410 l~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
|++|+.|+.+++||...... ..+..|...+..+.++|+|+++++++.||.+++|+...++...... .....|..
T Consensus 202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~----~~~~~~~~ 277 (420)
T 4gga_A 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----QTFTQHQG 277 (420)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS----EEECCCSS
T ss_pred EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee----eeecccCC
Confidence 99999999999999987543 3567889999999999999999999999999999998765432111 11345678
Q ss_pred CeEEEEEeCCCCCeEEEE--eCCCcEEEEeCCcc--------------eeEcCCCCEEEEEe--CCCcEEEEeCCCCC
Q 005646 488 RITGFQFLPQDSSKVMVS--CADSQVRILQGPNV--------------IGKYKDGKHIVSAG--EDSNVYMWNCIGHE 547 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~--s~D~~I~iwd~~~~--------------~~~~~dg~~l~sgs--~Dg~V~iWd~~~~~ 547 (686)
.|.+++|+|.+...++++ +.|+.|++||..+. +.++++++.|++++ .|+.|+|||+.+++
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 899999999777777764 47899999997642 56778999888765 78999999987754
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-30 Score=280.48 Aligned_cols=282 Identities=10% Similarity=0.109 Sum_probs=214.9
Q ss_pred ccCcce--eeec-CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 005646 202 KQGEGE--RVRL-NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 202 ~~~~~~--~~s~-~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd 278 (686)
|...+. +|++ +++++++|+.|+.|+||++....... .......+ +|.+.|++++|+|++++|++|+.||+|++||
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd 139 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLK 139 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 344554 5667 77899999999999999986521111 01111122 5999999999999999999999999999999
Q ss_pred ee---cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEE--ecc-
Q 005646 279 VV---EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHE--FHG- 352 (686)
Q Consensus 279 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~- 352 (686)
+. +++.......+ .+.. +..
T Consensus 140 ~~~~~~~~~~~~~~~~------------------------------------------------------~i~~~~~~~~ 165 (437)
T 3gre_A 140 VNHYQQESEVKFLNCE------------------------------------------------------CIRKINLKNF 165 (437)
T ss_dssp EEEEEETTEEEEEEEE------------------------------------------------------EEEEEEGGGG
T ss_pred eccccCCceeeccccc------------------------------------------------------eeEEEEccCc
Confidence 95 44322221100 1111 112
Q ss_pred -CCCCeeEEE--eeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 353 -HSGEILDLS--WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 353 -h~~~V~~l~--~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+...+.++. +++++ +|++++.|++|++||+++++++..+. |...|++++|+| ++++|++|+.||+|++||++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 166 GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp SSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETT
T ss_pred ccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcC
Confidence 567788888 55778 99999999999999999999988886 789999999999 89999999999999999999
Q ss_pred CCcEEEEe--ccCCcEEEEEEcc----CCCEEEEEecCCcEEEEeCCCCeeeeeeeEE--------eec--------ccc
Q 005646 426 SCHVVDWV--DIRQIVTAVCYRP----DGQGGIVGSMMGDCRFYNVSDNHLELDAEIC--------VHS--------KKK 483 (686)
Q Consensus 426 ~~~~~~~~--~~~~~V~~v~~sp----dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~--------~~~--------~~~ 483 (686)
+++.+... .+...|++++|+| ++++|++|+.||.|++||+.+++........ ... ...
T Consensus 245 ~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 245 FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 99887654 6778899996654 6889999999999999999988754422100 000 001
Q ss_pred --CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc------------------------------------------
Q 005646 484 --APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------------------------------------------ 519 (686)
Q Consensus 484 --~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------------------------------------------ 519 (686)
.|...|++++|++ +.+|++++.|+.|++||..+.
T Consensus 325 ~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (437)
T 3gre_A 325 GIRSLNALSTISVSN--DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDD 402 (437)
T ss_dssp CCCSGGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---------
T ss_pred ccccCCceEEEEECC--ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCc
Confidence 2667799999994 489999999999999996431
Q ss_pred ----------eeEcCC--CCEEEEEeCCCcEEEEe
Q 005646 520 ----------IGKYKD--GKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 520 ----------~~~~~d--g~~l~sgs~Dg~V~iWd 542 (686)
+++.++ +.+|++|+.||.|+||+
T Consensus 403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 234445 78999999999999995
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5.7e-29 Score=257.78 Aligned_cols=277 Identities=19% Similarity=0.320 Sum_probs=208.5
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
+.+++.++ +++.+.|++|+|||....... ....+.+|...|++++|+|++++||||+.||+|++|++.+++.+
T Consensus 30 ~l~WS~~~--~lAvg~D~tV~iWd~~tg~~~-----~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 30 LVDWSSGN--VLAVALDNSVYLWSASSGDIL-----QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CEEECTTS--EEEEEETTEEEEEETTTCCEE-----EEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEECCCC--EEEEEeCCEEEEEECCCCCEE-----EEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence 34555443 455567999999998754321 11234578999999999999999999999999999999999988
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
..+..+.....+.... . .+ .+. .........+... .....+..+.+|...+..+.++++
T Consensus 103 ~~~~~h~~~~~~~~~~--~--~~-l~s-------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 161 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWN--S--YI-LSS-------------GSRSGHIHHHDVR---VAEHHVATLSGHSQEVCGLRWAPD 161 (318)
T ss_dssp EEEECCSSCEEEEEEE--T--TE-EEE-------------EETTSEEEEEETT---SSSCEEEEEECCSSCEEEEEECTT
T ss_pred EEecCccceEEEeecC--C--CE-EEE-------------EecCCceEeeecC---CCceeEEEEcCccCceEEEEEcCC
Confidence 8877655433222111 1 00 001 1111122222111 112456778899999999999999
Q ss_pred C-EEEEEECCCcEEEEECCCCeee----eEe-eCCCCeEEEEEeecCCCEEE--EEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCL----RVF-PHSNYVTCVHFNPVDDNYFI--SGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~----~~~-~h~~~V~~v~fsp~~~~~l~--sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
+ +|++++.|++|++||+.+++.. ... .+.+.|.+++++|.+...+. +++.+++|++||...........+..
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~ 241 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 241 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS
T ss_pred CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee
Confidence 9 9999999999999999887533 222 28889999999995555553 55678999999999999998888999
Q ss_pred cEEEEEEccCCCEEEEEe--cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 438 IVTAVCYRPDGQGGIVGS--MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
.+..++|+|+++.+++++ .|+.|++||+.++++... ..+|...|++++|+|
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~--------l~gH~~~V~~l~~sp------------------- 294 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--------LKGHTSRVLSLTMSP------------------- 294 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT-------------------
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE--------EcCCCCCEEEEEEcC-------------------
Confidence 999999999999888765 799999999998775432 345788999999999
Q ss_pred CCcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 516 GPNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 516 ~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
||++|+||+.||+|+|||+.+.
T Consensus 295 ---------dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 295 ---------DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp ---------TSSCEEEEETTTEEEEECCSCC
T ss_pred ---------CCCEEEEEecCCeEEEEECCCC
Confidence 8899999999999999998764
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=3.4e-30 Score=271.46 Aligned_cols=291 Identities=13% Similarity=0.235 Sum_probs=218.0
Q ss_pred ceecccCCceEEEEEeeCCCEE-EEEeC---CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccce
Q 005646 244 QEIQAHDGSILTMKFSPDGQYL-ASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKIS 319 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~L-asgs~---Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (686)
..+++|...|++++|+|++..| ++|+. |+.|+|||+.+++...
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~--------------------------------- 58 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL--------------------------------- 58 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE---------------------------------
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc---------------------------------
Confidence 3457799999999999998655 56665 9999999998765211
Q ss_pred eEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC---C-EEEEEECCCcEEEEECCCCe-eeeEee-C
Q 005646 320 ILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN---N-YLLSASIDKTVRLWRVGNDH-CLRVFP-H 393 (686)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~---~-~L~s~s~Dg~V~iWd~~~~~-~~~~~~-h 393 (686)
....+|...|.+++|+|+ + +|++++.|+.|++||+.+++ ++..+. |
T Consensus 59 ----------------------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 110 (357)
T 3i2n_A 59 ----------------------------LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGH 110 (357)
T ss_dssp ----------------------------EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred ----------------------------eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEec
Confidence 112258899999999998 5 99999999999999999988 777777 9
Q ss_pred CCCeEEEEE------eecCCCEEEEEEcCCcEEEEecCCCc-EE-EEeccC----CcEEEEE----EccCCCEEEEEecC
Q 005646 394 SNYVTCVHF------NPVDDNYFISGSIDGKVRIWAVLSCH-VV-DWVDIR----QIVTAVC----YRPDGQGGIVGSMM 457 (686)
Q Consensus 394 ~~~V~~v~f------sp~~~~~l~sgs~Dg~V~iwd~~~~~-~~-~~~~~~----~~V~~v~----~spdg~~l~~gs~d 457 (686)
...|++++| +| ++++|++++.||.|++||++++. .+ .+..+. ..+.+++ |+|+++++++++.|
T Consensus 111 ~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 189 (357)
T 3i2n_A 111 KEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN 189 (357)
T ss_dssp SSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred ccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence 999999965 56 89999999999999999999876 33 333333 3788888 78899999999999
Q ss_pred CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC--CCCeEEEEeCCCcEEEEeCC------------------
Q 005646 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--DSSKVMVSCADSQVRILQGP------------------ 517 (686)
Q Consensus 458 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~--~~~~l~~~s~D~~I~iwd~~------------------ 517 (686)
|.|++||+.+++... ...|...|.+++|+|. ++..+++++.|+.|++||..
T Consensus 190 ~~i~i~d~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 190 GDIKLFDLRNMALRW---------ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS 260 (357)
T ss_dssp SEEEEEETTTTEEEE---------EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS
T ss_pred CeEEEEECccCceee---------ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC
Confidence 999999999887532 1234578999999995 67899999999999999853
Q ss_pred --cceeEcCCCC-EEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCC
Q 005646 518 --NVIGKYKDGK-HIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDS 594 (686)
Q Consensus 518 --~~~~~~~dg~-~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~ 594 (686)
+.++++|+++ +|++|+.||.|++||+..+....... ..|.......+...+..+..|.
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD-------------------SEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC-------------------TTSCCCCCCCEEEEEEEEECCS
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc-------------------CCCCccccccccceeeccccCC
Confidence 2367888998 89999999999999998765221110 0000000000112233333343
Q ss_pred --CcccccCCCccccCcccc-ccCCCCCCCCCCCCcC
Q 005646 595 --PENLAFAPARFSLGQEYV-FESFPKGCATWPEEKL 628 (686)
Q Consensus 595 --~~~~~~spd~~~~~~~~~-~~s~d~~~~~W~~~~~ 628 (686)
...++|+|+ +..++ +++.|+.+++|+..++
T Consensus 322 ~~v~~~~~s~~----~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 322 QPISSLDWSPD----KRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp SCEEEEEECSS----STTEEEEEETTSEEEEEEECC-
T ss_pred CCeeEEEEcCC----CCeEEEEecCCCcEEEEECCCc
Confidence 345678998 55565 6889999999996654
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=3.5e-29 Score=272.76 Aligned_cols=245 Identities=16% Similarity=0.282 Sum_probs=191.9
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
.|.+.|++++|+|+|++||+|+.||.|+||++.+++........
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~------------------------------------ 69 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG------------------------------------ 69 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC------------------------------------
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc------------------------------------
Confidence 37889999999999999999999999999999876521100000
Q ss_pred CCceEEEeCCccccccCCCeEEeccCC------------CCeeEEEeeCCC---EEEEEECCCcEEEEECCCCeee----
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHS------------GEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCL---- 388 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V~~l~~s~~~---~L~s~s~Dg~V~iWd~~~~~~~---- 388 (686)
..+....+.+|. ..|.+++|+|++ +|++++.|++|++||+.++...
T Consensus 70 ---------------~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 134 (447)
T 3dw8_B 70 ---------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGY 134 (447)
T ss_dssp ---------------CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred ---------------ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCccee
Confidence 001345667787 889999999985 8999999999999999775442
Q ss_pred -----------------------------------eEe--eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-CcEE
Q 005646 389 -----------------------------------RVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVV 430 (686)
Q Consensus 389 -----------------------------------~~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~~ 430 (686)
..+ .|...|++++|+| ++++|++| .|++|++||+++ ++.+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 212 (447)
T 3dw8_B 135 NLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSF 212 (447)
T ss_dssp SCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEE
T ss_pred cccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCcee
Confidence 122 3999999999999 99999998 799999999994 4444
Q ss_pred E--------EeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc--------cCCCCCeEEEE
Q 005646 431 D--------WVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK--------KAPCKRITGFQ 493 (686)
Q Consensus 431 ~--------~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~I~~l~ 493 (686)
. +..|...|++++|+|++ ++|++|+.||.|++||+.+++........+.... ..|...|++++
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (447)
T 3dw8_B 213 NIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVK 292 (447)
T ss_dssp EEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEE
T ss_pred eeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEE
Confidence 4 33678899999999998 9999999999999999988764211001111100 11223899999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCc-------------------------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPN-------------------------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~-------------------------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
|+| ++.+|++++. +.|++||..+ .++|+|++++|++|+.||.|+|||
T Consensus 293 ~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 293 FSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp ECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred ECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEE
Confidence 999 8899999988 9999999753 068999999999999999999999
Q ss_pred CCCCC
Q 005646 543 CIGHE 547 (686)
Q Consensus 543 ~~~~~ 547 (686)
+.+++
T Consensus 371 ~~~~~ 375 (447)
T 3dw8_B 371 RNTKR 375 (447)
T ss_dssp TTTCC
T ss_pred cCCCc
Confidence 99875
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=5.8e-29 Score=266.91 Aligned_cols=279 Identities=15% Similarity=0.177 Sum_probs=215.3
Q ss_pred cccCccee--eec-CCCccceeeccceEEEEEcCCccccccccc------cCceecccCCceEEEEEee-CCCEEEEEeC
Q 005646 201 DKQGEGER--VRL-NEEDAMFCSKVQRVKVYHCKKRSKELSALY------KGQEIQAHDGSILTMKFSP-DGQYLASAGD 270 (686)
Q Consensus 201 ~~~~~~~~--~s~-~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~------~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~ 270 (686)
.|...+.+ |++ +++++++++.|+.|+||++........... ......+|...|++++|+| ++++|++++.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 35566544 556 778999999999999999876543211100 0111246999999999999 7889999999
Q ss_pred CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe
Q 005646 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (686)
Q Consensus 271 Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (686)
||.|++||+.+++....+
T Consensus 121 d~~i~iwd~~~~~~~~~~-------------------------------------------------------------- 138 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVF-------------------------------------------------------------- 138 (408)
T ss_dssp TSEEEEEETTTTEEEEEE--------------------------------------------------------------
T ss_pred CCeEEEeeCCCCccceec--------------------------------------------------------------
Confidence 999999999887633222
Q ss_pred ccCCCCeeEEEeeCC---C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCC-EEEEEEcCCcEEEEec
Q 005646 351 HGHSGEILDLSWSKN---N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAV 424 (686)
Q Consensus 351 ~~h~~~V~~l~~s~~---~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~-~l~sgs~Dg~V~iwd~ 424 (686)
.+...+.++.|++. + +|++++.|+.|++||+.+++++..+. |...|++++|+| ++. +|++|+.||.|++||+
T Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~ 216 (408)
T 4a11_B 139 -NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDV 216 (408)
T ss_dssp -ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEET
T ss_pred -cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEEC
Confidence 25667888888874 3 89999999999999999999988888 999999999999 666 6999999999999999
Q ss_pred CCCc-EEEE----------------eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 425 LSCH-VVDW----------------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 425 ~~~~-~~~~----------------~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
+++. .+.. ..|...|++++|+|++++|++++.||.|++||+.+++....... .......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~ 292 (408)
T 4a11_B 217 RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG----KVCNNSK 292 (408)
T ss_dssp TCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC----CCCCCCS
T ss_pred CCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc----ccccccc
Confidence 8765 2221 35778899999999999999999999999999998765432111 1111111
Q ss_pred CeEEEEEeCCCCCeEEEEeCCCcEEEEeCC---------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 488 RITGFQFLPQDSSKVMVSCADSQVRILQGP---------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~---------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
....+.+.......+++++.|+.|++||.. +.++++|++++|++|+.||.|++|++.+.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 122333444456788888999999999964 347899999999999999999999999876
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.9e-29 Score=263.06 Aligned_cols=268 Identities=11% Similarity=0.076 Sum_probs=215.6
Q ss_pred ccCcc--eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEE
Q 005646 202 KQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQ 278 (686)
Q Consensus 202 ~~~~~--~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd 278 (686)
|...+ .+|+++++.+++++.|+.|+||++........ ...+.+|...|++++|+|+++ +|++|+.||.|++||
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE----EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc----ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 44444 45677888999999999999999876542111 134558999999999999999 999999999999999
Q ss_pred e-ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc--CCC
Q 005646 279 V-VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG--HSG 355 (686)
Q Consensus 279 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~ 355 (686)
+ .+++ ...+.+ |..
T Consensus 86 ~~~~~~---------------------------------------------------------------~~~~~~~~~~~ 102 (342)
T 1yfq_A 86 LIGSPS---------------------------------------------------------------FQALTNNEANL 102 (342)
T ss_dssp SSSSSS---------------------------------------------------------------EEECBSCCCCS
T ss_pred eccCCc---------------------------------------------------------------eEeccccCCCC
Confidence 8 7654 234456 999
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCC---------CeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGN---------DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~---------~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
.|.+++|+| + +|++++.|+.|++||+.+ ++++..+.|...|++++|+| +. |++++.|+.|++||++
T Consensus 103 ~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~ 178 (342)
T 1yfq_A 103 GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLP 178 (342)
T ss_dssp CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-SE--EEEEESTTEEEEEESS
T ss_pred ceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC-Cc--EEEEeCCCeEEEEECC
Confidence 999999999 7 999999999999999998 88888888999999999998 55 9999999999999999
Q ss_pred C-CcE---EEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCC------eeeeeeeEEeecc---ccCCCCCeEE
Q 005646 426 S-CHV---VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDN------HLELDAEICVHSK---KKAPCKRITG 491 (686)
Q Consensus 426 ~-~~~---~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~------~~~~~~~~~~~~~---~~~~~~~I~~ 491 (686)
+ +.. .....+...|.+++|+| +++++++++.||.|++|++... +... .+..+.. ...|...|++
T Consensus 179 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~ 256 (342)
T 1yfq_A 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF--AFRCHRLNLKDTNLAYPVNS 256 (342)
T ss_dssp CCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE--EEECCCCCTTCCSSCCCEEE
T ss_pred ccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce--eeecccccccccccceeEEE
Confidence 8 542 24456788999999999 9999999999999999999876 2221 1111110 0123458999
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEeCCcc--------------eeEcCCCCEEEEEeCCCc-EEEEeC
Q 005646 492 FQFLPQDSSKVMVSCADSQVRILQGPNV--------------IGKYKDGKHIVSAGEDSN-VYMWNC 543 (686)
Q Consensus 492 l~fsp~~~~~l~~~s~D~~I~iwd~~~~--------------~~~~~dg~~l~sgs~Dg~-V~iWd~ 543 (686)
++|+| ++.+|++++.|+.|++||..+. ....+++++|++|+.||. .+.|..
T Consensus 257 ~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 257 IEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred EEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCcccccccc
Confidence 99999 7889999999999999996532 111279999999999999 666664
No 95
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.2e-29 Score=256.19 Aligned_cols=267 Identities=17% Similarity=0.181 Sum_probs=211.0
Q ss_pred CceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
.+.+.+|.+.|++++| |++++|++|+.||.|++||+.+++
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~--------------------------------------- 50 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW--------------------------------------- 50 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---------------------------------------
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---------------------------------------
Confidence 4568899999999999 999999999999999999997654
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC---eeeeEee-CCCCe
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND---HCLRVFP-HSNYV 397 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~---~~~~~~~-h~~~V 397 (686)
....+..|...|.+++|+|++ +|++++.|+.|++|++... +++..+. |...|
T Consensus 51 -----------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i 107 (313)
T 3odt_A 51 -----------------------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNV 107 (313)
T ss_dssp -----------------------EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCE
T ss_pred -----------------------EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCE
Confidence 234455689999999999999 9999999999999998764 4555565 99999
Q ss_pred EEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeE
Q 005646 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 476 (686)
++++| ++++|++++.||.|++|| .......+..|...+.+++|.| +++++++++.||.|++||... ...
T Consensus 108 ~~~~~---~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~---- 177 (313)
T 3odt_A 108 CSLSF---QDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIK---- 177 (313)
T ss_dssp EEEEE---ETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEE----
T ss_pred EEEEe---cCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEE----
Confidence 99999 357999999999999999 3333446667899999999999 999999999999999999432 211
Q ss_pred EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEE
Q 005646 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMW 541 (686)
Q Consensus 477 ~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iW 541 (686)
.....|...|.+++|+| ++. +++++.|+.|++||..+ .++++|++ .|++++.||.|++|
T Consensus 178 ---~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iw 251 (313)
T 3odt_A 178 ---TFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIW 251 (313)
T ss_dssp ---EECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEE
T ss_pred ---EEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEE
Confidence 11233678899999999 555 99999999999999653 36788898 69999999999999
Q ss_pred eCCCCCCCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCC
Q 005646 542 NCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCA 621 (686)
Q Consensus 542 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~ 621 (686)
|+.+++ .+..+..+ ......++|+|++. +++++.|+.+.
T Consensus 252 d~~~~~--------~~~~~~~~----------------------------~~~i~~~~~~~~~~-----~~~~~~dg~i~ 290 (313)
T 3odt_A 252 SKENGS--------LKQVITLP----------------------------AISIWSVDCMSNGD-----IIVGSSDNLVR 290 (313)
T ss_dssp CTTTCC--------EEEEEECS----------------------------SSCEEEEEECTTSC-----EEEEETTSCEE
T ss_pred ECCCCc--------eeEEEecc----------------------------CceEEEEEEccCCC-----EEEEeCCCcEE
Confidence 998865 11111111 11233456788742 55678899999
Q ss_pred CCCCCcCC
Q 005646 622 TWPEEKLP 629 (686)
Q Consensus 622 ~W~~~~~~ 629 (686)
+|+.++..
T Consensus 291 iw~~~~~~ 298 (313)
T 3odt_A 291 IFSQEKSR 298 (313)
T ss_dssp EEESCGGG
T ss_pred EEeCCCCc
Confidence 99966543
No 96
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.5e-28 Score=253.00 Aligned_cols=226 Identities=19% Similarity=0.246 Sum_probs=182.4
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceE
Q 005646 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (686)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (686)
..+|+||+++ +||+| .|++|+|||+.+++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-------------------------------------------- 61 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-------------------------------------------- 61 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE--------------------------------------------
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE--------------------------------------------
Confidence 4679999886 77776 5999999999988744322
Q ss_pred EEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEE
Q 005646 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l 410 (686)
.+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...+.++.+ ++.++
T Consensus 62 ----------------~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l 122 (318)
T 4ggc_A 62 ----------------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYIL 122 (318)
T ss_dssp ----------------ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEE
T ss_pred ----------------EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEE
Confidence 234688899999999999 99999999999999999999999888 8888887665 56899
Q ss_pred EEEEcCCcEEEEecCCCcE--EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 411 ISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~--~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
++|+.++.+++|+...... .....|...+..+.+.++++++++++.||.|++||+.+++....... ....+...
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~ 198 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ----TFTQHQGA 198 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE----EECCCCSC
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee----eecccCCc
Confidence 9999999999999987643 35678899999999999999999999999999999987654332211 13345678
Q ss_pred eEEEEEeCCCCCeEE--EEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEe--CCCcEEEEeCCCCC
Q 005646 489 ITGFQFLPQDSSKVM--VSCADSQVRILQGPN--------------VIGKYKDGKHIVSAG--EDSNVYMWNCIGHE 547 (686)
Q Consensus 489 I~~l~fsp~~~~~l~--~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs--~Dg~V~iWd~~~~~ 547 (686)
|..+.++|.+...+. +++.++.|++||... .+.+.++++.+++++ .|+.|+|||+.+++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred eEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence 999999996666554 455778999998653 356777888887765 78999999987754
No 97
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.7e-28 Score=259.06 Aligned_cols=235 Identities=19% Similarity=0.324 Sum_probs=195.3
Q ss_pred CceecccCCceEEEEEeeC---CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccce
Q 005646 243 GQEIQAHDGSILTMKFSPD---GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKIS 319 (686)
Q Consensus 243 ~~~l~~H~~~I~~l~fspd---g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (686)
.+.+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+...
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------------------------------- 76 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------------------------------- 76 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------------------------------
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------------------------------
Confidence 3567889999999999999 69999999999999999986320
Q ss_pred eEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeE
Q 005646 320 ILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT 398 (686)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~ 398 (686)
.....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++....|...|+
T Consensus 77 -------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~ 131 (368)
T 3mmy_A 77 -------------------------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK 131 (368)
T ss_dssp -------------------------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred -------------------------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE
Confidence 1224566799999999999999 99999999999999999999999888999999
Q ss_pred EEEE--eecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeE
Q 005646 399 CVHF--NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 399 ~v~f--sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 476 (686)
+++| +| ++++|++++.||.|++||+++++.+........+.++.+.+ ..+++++.++.+++|++.........
T Consensus 132 ~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~-- 206 (368)
T 3mmy_A 132 TIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRR-- 206 (368)
T ss_dssp EEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEE--
T ss_pred EEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhh--
Confidence 9999 77 88899999999999999999998887777777777777665 48889999999999999876543211
Q ss_pred EeeccccCCCCCeEEEEEeCCCCC----eEEEEeCCCcEEEEeCC------------------------------cceeE
Q 005646 477 CVHSKKKAPCKRITGFQFLPQDSS----KVMVSCADSQVRILQGP------------------------------NVIGK 522 (686)
Q Consensus 477 ~~~~~~~~~~~~I~~l~fsp~~~~----~l~~~s~D~~I~iwd~~------------------------------~~~~~ 522 (686)
....+...+..+.+.+ +.. .+++++.|+.|++|+.. +.+++
T Consensus 207 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (368)
T 3mmy_A 207 ----IESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF 281 (368)
T ss_dssp ----CCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE
T ss_pred ----ccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE
Confidence 1222334566666665 333 39999999999999854 24678
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|++++|++|+.||.|+|||+.+++
T Consensus 282 sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 282 HPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp CTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ecCCCEEEEEccCCeEEEEECCCCc
Confidence 9999999999999999999998754
No 98
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.2e-28 Score=265.65 Aligned_cols=228 Identities=16% Similarity=0.227 Sum_probs=186.3
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+|...+....+++++..+++++.|+.|++||+.+++....+.
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~-------------------------------------- 130 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAE-------------------------------------- 130 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEE--------------------------------------
T ss_pred CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeee--------------------------------------
Confidence 455544443334444568889999999999998876322211
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeec
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV 405 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~ 405 (686)
..|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|.+++|+
T Consensus 131 -----------------------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-- 185 (401)
T 4aez_A 131 -----------------------TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN-- 185 (401)
T ss_dssp -----------------------CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--
T ss_pred -----------------------cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--
Confidence 1378899999999999 99999999999999999999998887 99999999995
Q ss_pred CCCEEEEEEcCCcEEEEecCC-Cc-EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecccc
Q 005646 406 DDNYFISGSIDGKVRIWAVLS-CH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~-~~-~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
+++|++|+.||.|++||++. .. ...+..|...|++++|+|++++|++|+.||.|++||+.+...... ..
T Consensus 186 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--------~~ 256 (401)
T 4aez_A 186 -RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT--------KT 256 (401)
T ss_dssp -TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE--------EC
T ss_pred -CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE--------ec
Confidence 47999999999999999984 33 346667899999999999999999999999999999988654331 23
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEe--CCCcEEEEeCCc--------------ceeEcCCCCEEEEEe--CCCcEEEEeCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSC--ADSQVRILQGPN--------------VIGKYKDGKHIVSAG--EDSNVYMWNCIG 545 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s--~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs--~Dg~V~iWd~~~ 545 (686)
.|...|.+++|+|++..++++++ .|+.|++||..+ .++++|++++|++++ .||.|+||++.+
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 46788999999996667777765 799999999653 367889999999954 899999999876
Q ss_pred CC
Q 005646 546 HE 547 (686)
Q Consensus 546 ~~ 547 (686)
+.
T Consensus 337 ~~ 338 (401)
T 4aez_A 337 SG 338 (401)
T ss_dssp TE
T ss_pred cc
Confidence 43
No 99
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=280.80 Aligned_cols=266 Identities=12% Similarity=0.061 Sum_probs=201.4
Q ss_pred CCccceeeccceEEEEEcCCccccc----cccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKEL----SALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~----~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~ 288 (686)
+..||+++.|++|+||++....... ........+.+|...|++++|++++ +||+|+.||+|++||+.++.
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~----- 298 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE----- 298 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS-----
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC-----
Confidence 4589999999999999987543210 0011223678999999999999864 89999999999999997643
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE--EeeCCC
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL--SWSKNN 366 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l--~~s~~~ 366 (686)
.+...+.+|...|.++ +|+|++
T Consensus 299 --------------------------------------------------------~~~~~~~~H~~~V~sv~~~~s~~g 322 (524)
T 2j04_B 299 --------------------------------------------------------VPSFYDQVHDSYILSVSTAYSDFE 322 (524)
T ss_dssp --------------------------------------------------------SCSEEEECSSSCEEEEEEECCTTS
T ss_pred --------------------------------------------------------CceEEeecccccEEEEEEEcCCCC
Confidence 2345567899999999 578875
Q ss_pred --EEEEEECCCcEEEEECCCCeeeeEee-CC--CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-EEEeccCCcEE
Q 005646 367 --YLLSASIDKTVRLWRVGNDHCLRVFP-HS--NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-VDWVDIRQIVT 440 (686)
Q Consensus 367 --~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~--~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~~~~V~ 440 (686)
+|+|++.|++|+|||+++++++..+. |. ..|.+++|+| ++..|++++.|++|++||++++.+ ..+.+|...|+
T Consensus 323 ~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~ 401 (524)
T 2j04_B 323 DTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTIT 401 (524)
T ss_dssp CCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEE
T ss_pred CeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceE
Confidence 88999999999999999988877665 54 3589999999 899999999999999999999876 45678999999
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe-----
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ----- 515 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd----- 515 (686)
+|+|+|+|++|++|+.||+|++||+....+..... .....+...|..++|+| ++..+. ...+..+..|+
T Consensus 402 sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~----~~~~~~~~~v~~v~~sp-~g~~~~-~~~~~~~~~~~~~g~~ 475 (524)
T 2j04_B 402 AIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKN----SSATQKSLRLWKWDYSI-KDDKYR-IDSSYEVYPLTVNDVS 475 (524)
T ss_dssp EEECCSSCCBCEEEETTTEEECCBSCSSTTTCC----------CCCCEEEECBCCS-SSCEEE-ECCCCCCCC-------
T ss_pred EEEeCCCCCeEEEEECCCEEEEEechHhhcccccc----CccceeeeEEEEeccCC-CCCeEE-ccCCceecccccCCcc
Confidence 99999999999999999999999986532110000 00001223578899999 555332 22222222221
Q ss_pred ---------CCcceeEcCCC---CEEEEEeCCCcEEEEeCCCCC
Q 005646 516 ---------GPNVIGKYKDG---KHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 516 ---------~~~~~~~~~dg---~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
....++|+|++ .+||+|+.||.|+||++....
T Consensus 476 ~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 476 KAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp ------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred eeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 22468999985 599999999999999997643
No 100
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=2.1e-28 Score=260.38 Aligned_cols=231 Identities=16% Similarity=0.165 Sum_probs=182.7
Q ss_pred ccceeeccceEEEEEcCCccccccccc--cCceecccCCceEEEEEeeCCCEEEEE--eCCCcEEEEEeecCeeeeeecc
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALY--KGQEIQAHDGSILTMKFSPDGQYLASA--GDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~--~~~~l~~H~~~I~~l~fspdg~~Lasg--s~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
.++.++.++.+++|++......+.... .......+...+.+++|||||++||+| +.|++|+|||+.+++.+.
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~---- 171 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF---- 171 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE----
T ss_pred EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE----
Confidence 344566788999999866543332221 122334566779999999999998755 478999999998876332
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~ 369 (686)
.+ .|.+.|.+++|+|+| +|+
T Consensus 172 ----------------------------------------------------------~~-~~~~~V~~v~fspdg~~l~ 192 (365)
T 4h5i_A 172 ----------------------------------------------------------EI-ETRGEVKDLHFSTDGKVVA 192 (365)
T ss_dssp ----------------------------------------------------------EE-ECSSCCCEEEECTTSSEEE
T ss_pred ----------------------------------------------------------Ee-CCCCceEEEEEccCCceEE
Confidence 22 267789999999999 777
Q ss_pred EEECCCcEEEEECCCCeeeeEe---eCCCCeEEEEEeecCCCEEEEEEcCC----cEEEEecCCCcE-----EEEeccCC
Q 005646 370 SASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNPVDDNYFISGSIDG----KVRIWAVLSCHV-----VDWVDIRQ 437 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~---~h~~~V~~v~fsp~~~~~l~sgs~Dg----~V~iwd~~~~~~-----~~~~~~~~ 437 (686)
+++ ++.+++|+..+++.+... .|...|.+++|+| ++.++++++.|+ .+++|++..... .....|..
T Consensus 193 s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 270 (365)
T 4h5i_A 193 YIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK 270 (365)
T ss_dssp EEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS
T ss_pred ecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC
Confidence 777 556777777777665433 2888999999999 999999999987 688999887653 24557888
Q ss_pred cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.|++++|+|||++||+|+.|++|+|||+.++++.. ....+|...|++++|+| ++++|++++.|++||||+++
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~-------~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK-------IFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE-------EETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECC
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE-------EecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcC
Confidence 99999999999999999999999999999887543 12457889999999999 89999999999999999986
Q ss_pred c
Q 005646 518 N 518 (686)
Q Consensus 518 ~ 518 (686)
.
T Consensus 343 ~ 343 (365)
T 4h5i_A 343 L 343 (365)
T ss_dssp T
T ss_pred C
Confidence 4
No 101
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.4e-29 Score=290.20 Aligned_cols=239 Identities=19% Similarity=0.286 Sum_probs=201.3
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
..+.+|.++|++++|+|+|++|++|+.||+|+|||+.++..
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~--------------------------------------- 43 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------- 43 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------------------------
Confidence 45788999999999999999999999999999999974431
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC--C-EEEEEECCCcEEEEECCCCe--eeeEee-CCCCe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYV 397 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~--~~~~~~-h~~~V 397 (686)
+.+..+.+|.+.|.+++|+|+ + +|++++.||+|++||+.+++ .+..+. |...|
T Consensus 44 ---------------------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V 102 (753)
T 3jro_A 44 ---------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 102 (753)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ---------------------ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe
Confidence 245667789999999999987 7 99999999999999999987 555555 99999
Q ss_pred EEEEEeecC--CCEEEEEEcCCcEEEEecCCC---cEEEEeccCCcEEEEEEcc-------------CCCEEEEEecCCc
Q 005646 398 TCVHFNPVD--DNYFISGSIDGKVRIWAVLSC---HVVDWVDIRQIVTAVCYRP-------------DGQGGIVGSMMGD 459 (686)
Q Consensus 398 ~~v~fsp~~--~~~l~sgs~Dg~V~iwd~~~~---~~~~~~~~~~~V~~v~~sp-------------dg~~l~~gs~dg~ 459 (686)
++++|+| + +++|++|+.||+|++||++++ .......|...|++++|+| +++.+++|+.||.
T Consensus 103 ~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 103 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred EEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 9999999 7 899999999999999999887 3446668899999999999 5899999999999
Q ss_pred EEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC--CCeEEEEeCCCcEEEEeCCc-------------------
Q 005646 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPN------------------- 518 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~--~~~l~~~s~D~~I~iwd~~~------------------- 518 (686)
|++||+.++..... .......|...|++++|+|++ +..+++++.|+.|++||..+
T Consensus 182 I~iwd~~~~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 257 (753)
T 3jro_A 182 VKIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (753)
T ss_dssp EEEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC
T ss_pred EEEEeccCCcccce----eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce
Confidence 99999987643221 112234577899999999943 89999999999999998543
Q ss_pred -ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 519 -VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 -~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++|+|+|++|++|+.||.|+||++..+.
T Consensus 258 ~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 258 WRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 36789999999999999999999998654
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-28 Score=259.19 Aligned_cols=249 Identities=16% Similarity=0.248 Sum_probs=203.2
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC--CCEEEEEeCCCcEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~v 276 (686)
.|...+. +|+++++++++++.|+.|+||++...... ....+.+|...|++++|+++ +++|++|+.||.|++
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-----LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-----EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-----eeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 4555554 46677889999999999999998643222 23567889999999999987 999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++. ..+..+.+|...
T Consensus 84 wd~~~~~~------------------------------------------------------------~~~~~~~~~~~~ 103 (379)
T 3jrp_A 84 WKEENGRW------------------------------------------------------------SQIAVHAVHSAS 103 (379)
T ss_dssp EEEETTEE------------------------------------------------------------EEEEEECCCSSC
T ss_pred EEcCCCce------------------------------------------------------------eEeeeecCCCcc
Confidence 99987651 134455679999
Q ss_pred eeEEEeeCC--C-EEEEEECCCcEEEEECCCCeeee--Ee-eCCCCeEEEEEeec------------CCCEEEEEEcCCc
Q 005646 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHCLR--VF-PHSNYVTCVHFNPV------------DDNYFISGSIDGK 418 (686)
Q Consensus 357 V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~~~--~~-~h~~~V~~v~fsp~------------~~~~l~sgs~Dg~ 418 (686)
|.+++|+|+ + +|++++.|++|++||+.++.... .+ .|...|++++|+|. ++.+|++|+.||.
T Consensus 104 v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 183 (379)
T 3jrp_A 104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183 (379)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred eEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence 999999998 7 99999999999999999874332 23 49999999999994 5899999999999
Q ss_pred EEEEecCCCc----EE-EEeccCCcEEEEEEccC---CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 419 VRIWAVLSCH----VV-DWVDIRQIVTAVCYRPD---GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 419 V~iwd~~~~~----~~-~~~~~~~~V~~v~~spd---g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
|++||++++. .. .+..|...|++++|+|+ +++|++++.||.|++||+.++....... ......|...|+
T Consensus 184 i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~v~ 260 (379)
T 3jrp_A 184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT---LLKEEKFPDVLW 260 (379)
T ss_dssp EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE---ESSSSCCSSCEE
T ss_pred EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceee---eeccccCCCcEE
Confidence 9999998764 22 45568899999999999 8999999999999999998764221111 112344678899
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 491 GFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
+++|+| ++.+|++++.|+.|++|+...
T Consensus 261 ~~~~s~-~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 261 RASWSL-SGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEECS-SSCCEEEEESSSSEEEEEEEE
T ss_pred EEEEcC-CCCEEEEecCCCcEEEEeCCC
Confidence 999999 889999999999999999764
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=2.6e-28 Score=254.96 Aligned_cols=261 Identities=16% Similarity=0.239 Sum_probs=205.4
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--CCCEEEEEeCCCcEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~v 276 (686)
.|...+. +|+++++++++++.|+.|+||++....... .....+.+|...|++++|+| ++++|++|+.||.|++
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW---ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE---EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc---eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 4555554 456778899999999999999987643221 12356788999999999999 6999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++...... ..+++..+.+|...
T Consensus 86 wd~~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~~~~~ 112 (351)
T 3f3f_A 86 WEEDPDQEECSGR-----------------------------------------------------RWNKLCTLNDSKGS 112 (351)
T ss_dssp EEECTTSCTTSSC-----------------------------------------------------SEEEEEEECCCSSC
T ss_pred EecCCCccccccc-----------------------------------------------------CcceeeeecccCCc
Confidence 9998764210000 00245667789999
Q ss_pred eeEEEeeCC--C-EEEEEECCCcEEEEECCCCeeeeEe--------------eCCCCeEEEEEeec--CCCEEEEEEcCC
Q 005646 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHCLRVF--------------PHSNYVTCVHFNPV--DDNYFISGSIDG 417 (686)
Q Consensus 357 V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~~~~~--------------~h~~~V~~v~fsp~--~~~~l~sgs~Dg 417 (686)
|.+++|+|+ + +|++++.|++|++||+.+++++..+ .|...+.+++|+|. ++.+|++++.|+
T Consensus 113 v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 192 (351)
T 3f3f_A 113 LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ 192 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE
T ss_pred eeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC
Confidence 999999998 7 9999999999999999988755433 37789999999993 289999999999
Q ss_pred cEEEEecCCCcE---EEEeccCCcEEEEEEccCC----CEEEEEecCCcEEEEeCCCCeeeee-----------------
Q 005646 418 KVRIWAVLSCHV---VDWVDIRQIVTAVCYRPDG----QGGIVGSMMGDCRFYNVSDNHLELD----------------- 473 (686)
Q Consensus 418 ~V~iwd~~~~~~---~~~~~~~~~V~~v~~spdg----~~l~~gs~dg~i~iwd~~~~~~~~~----------------- 473 (686)
.+.+|+...++. ..+..|...|++++|+|++ ++|++|+.||.|++||+........
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
T 3f3f_A 193 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV 272 (351)
T ss_dssp EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------
T ss_pred cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccc
Confidence 998888888764 2445688899999999998 8999999999999999976421110
Q ss_pred ---------------------eeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 474 ---------------------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 474 ---------------------~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
...........|...|++++|+| ++.+|++++.|+.|++|+..+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred ccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEecCc
Confidence 01122223456888999999999 789999999999999999874
No 104
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=2e-28 Score=256.71 Aligned_cols=233 Identities=14% Similarity=0.138 Sum_probs=196.0
Q ss_pred ecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEee
Q 005646 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (686)
..+|.+.|++++|+|++++|++++.|+.|+||++.++...
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~---------------------------------------- 46 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---------------------------------------- 46 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------------------------
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------------------------
Confidence 3579999999999999999999999999999999875411
Q ss_pred ccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEEC-CCCeeeeEee--CCCCeEEE
Q 005646 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRV-GNDHCLRVFP--HSNYVTCV 400 (686)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~-~~~~~~~~~~--h~~~V~~v 400 (686)
.+...+.+|...|.+++|+|++ +|++++.|+.|++||+ .+++...... |...|+++
T Consensus 47 -------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l 107 (342)
T 1yfq_A 47 -------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI 107 (342)
T ss_dssp -------------------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEE
T ss_pred -------------------ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEE
Confidence 0123345799999999999987 5999999999999999 8887766666 99999999
Q ss_pred EEeecCCCEEEEEEcCCcEEEEecCC---------CcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC-Cee
Q 005646 401 HFNPVDDNYFISGSIDGKVRIWAVLS---------CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHL 470 (686)
Q Consensus 401 ~fsp~~~~~l~sgs~Dg~V~iwd~~~---------~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~-~~~ 470 (686)
+|+| +++|++++.|+.|++||+++ ++.+....+...|.+++|+|++ +++++.+|.|++||+.+ ...
T Consensus 108 ~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 108 CKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC
T ss_pred EeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc
Confidence 9998 88999999999999999988 7666666688999999999987 99999999999999987 443
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc------------------------------ce
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN------------------------------VI 520 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~------------------------------~~ 520 (686)
.... ....+...|.+++|+|.++..+++++.|+.|++|+... .+
T Consensus 184 ~~~~------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (342)
T 1yfq_A 184 NGTI------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257 (342)
T ss_dssp CCEE------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE
T ss_pred ccee------eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE
Confidence 2111 12345578999999984468999999999999988532 35
Q ss_pred eEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 521 GKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 521 ~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+++|++++|++|+.||.|++||+.+++
T Consensus 258 ~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 258 EFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp EECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred EEcCCCCEEEEecCCceEEEEcCccHh
Confidence 688899999999999999999998765
No 105
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-28 Score=257.24 Aligned_cols=265 Identities=12% Similarity=0.059 Sum_probs=201.8
Q ss_pred eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~ 287 (686)
.+..++..+++|+.|+.|++|++...... ..+. ...|.++.|+|+ +++++.|++|++|+......+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-------~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI-------TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD 110 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCE-------EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEE-------EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEee
Confidence 34467788999999999999998764321 1122 456888889888 99999999999999764221111
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEe-ccCCCCeeEEEeeC--
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSK-- 364 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~-- 364 (686)
+.. .+.+..+ .+|.+.|.+++|+|
T Consensus 111 ~~~-----------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~ 137 (343)
T 3lrv_A 111 SKT-----------------------------------------------------NKVLREIEVDSANEIIYMYGHNEV 137 (343)
T ss_dssp TTT-----------------------------------------------------CCEEEEEECCCSSCEEEEECCC--
T ss_pred cCC-----------------------------------------------------cceeEEeecCCCCCEEEEEcCCCC
Confidence 100 0112222 36778999999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--EEec-cCCc
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVD-IRQI 438 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~-~~~~ 438 (686)
++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++.+|++|+.||.|++||+++++.+ .+.. |...
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 216 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK 216 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence 88 99999999999999999999977664 667899999999 9999999999999999999998865 4555 7899
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe--EEEEEeCCCCCeEEEEeC-CCcEEEEe
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI--TGFQFLPQDSSKVMVSCA-DSQVRILQ 515 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I--~~l~fsp~~~~~l~~~s~-D~~I~iwd 515 (686)
|++++|+|+|.+|++++ ++.|++||+++.+....... ...|...+ .+++|+| ++.+|++++. |+.|++|+
T Consensus 217 v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT-----YTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC-----CBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc-----cccccccccceEEEECC-CCCEEEEecCCCCcEEEEE
Confidence 99999999999999999 55999999988764322110 01122223 4699999 7889999888 99999998
Q ss_pred CCc-----------ceeEcC---CCCEEEEEeCCCcEEEEeCCC
Q 005646 516 GPN-----------VIGKYK---DGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 516 ~~~-----------~~~~~~---dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
..+ .+++.+ +.+.|++++.||.++++-...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 290 FDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp ECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EcccccceEecCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 632 355666 889999999999999986544
No 106
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=251.27 Aligned_cols=275 Identities=13% Similarity=0.193 Sum_probs=214.6
Q ss_pred cccCccee--eecC---CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEE
Q 005646 201 DKQGEGER--VRLN---EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (686)
Q Consensus 201 ~~~~~~~~--~s~~---~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (686)
.|...+.+ |+++ ++.+++|+.|+.|+||++....... ...+.+|.+.|++++|+|++++|++++.||.|+
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-----PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-----EEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-----EEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 45555544 5555 4789999999999999987633222 245778999999999999999999999999999
Q ss_pred EEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCC
Q 005646 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (686)
Q Consensus 276 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 355 (686)
+||+.+++.+ .+.+|..
T Consensus 112 iwd~~~~~~~---------------------------------------------------------------~~~~~~~ 128 (368)
T 3mmy_A 112 MWDLSSNQAI---------------------------------------------------------------QIAQHDA 128 (368)
T ss_dssp EEETTTTEEE---------------------------------------------------------------EEEECSS
T ss_pred EEEcCCCCce---------------------------------------------------------------eeccccC
Confidence 9999876521 2345899
Q ss_pred CeeEEEe--eCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 356 EILDLSW--SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 356 ~V~~l~~--s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
.|.+++| ++++ +|++++.|++|++||+++++++..+.....+.++.+.+ ..+++++.++.+++|+++.......
T Consensus 129 ~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~ 205 (368)
T 3mmy_A 129 PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR 205 (368)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE
T ss_pred ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh
Confidence 9999999 8888 89999999999999999999999999777888887764 5889999999999999988754422
Q ss_pred e---ccCCcEEEEEEccCCCE----EEEEecCCcEEEEeCCCCee-eeeeeEEeecc------ccCCCCCeEEEEEeCCC
Q 005646 433 V---DIRQIVTAVCYRPDGQG----GIVGSMMGDCRFYNVSDNHL-ELDAEICVHSK------KKAPCKRITGFQFLPQD 498 (686)
Q Consensus 433 ~---~~~~~V~~v~~spdg~~----l~~gs~dg~i~iwd~~~~~~-~~~~~~~~~~~------~~~~~~~I~~l~fsp~~ 498 (686)
. .+...+.++++.+++.. +++++.||.|++||+..... .....+..+.. ...|...|++++|+| +
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~ 284 (368)
T 3mmy_A 206 RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-V 284 (368)
T ss_dssp ECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-T
T ss_pred hccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-C
Confidence 2 23455677777776655 99999999999999987643 11111111110 112223799999999 7
Q ss_pred CCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 499 SSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 499 ~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.+|++++.|+.|++||..+ .++|+|+|++|++|+.|+..+.|++.+.+
T Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 285 HGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred CCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 89999999999999999653 37789999999999999977777765543
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2.6e-27 Score=257.71 Aligned_cols=264 Identities=19% Similarity=0.316 Sum_probs=201.0
Q ss_pred eecccCcceeee--cC-CCccceeeccceEEEEEcCCccccc---cccccCceecccCCceEEEEEeeCCC-EEEEEeCC
Q 005646 199 VVDKQGEGERVR--LN-EEDAMFCSKVQRVKVYHCKKRSKEL---SALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDD 271 (686)
Q Consensus 199 ~~~~~~~~~~~s--~~-~~~l~~g~~d~~v~vw~~~~~~~~~---~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~D 271 (686)
...|...+.+++ ++ +..+++++.+|.|+||++....... ........+.+|...|++|+|+|++. +|++|+.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 345666665554 43 4588999999999999987531111 11233456789999999999999988 99999999
Q ss_pred CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec
Q 005646 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (686)
Q Consensus 272 g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (686)
|.|++|++.++...... ..+...+.
T Consensus 204 g~i~vwd~~~~~~~~~~-------------------------------------------------------~~~~~~~~ 228 (430)
T 2xyi_A 204 HTICLWDINATPKEHRV-------------------------------------------------------IDAKNIFT 228 (430)
T ss_dssp SCEEEEETTSCCBGGGE-------------------------------------------------------EECSEEEC
T ss_pred CeEEEEeCCCCCCCCce-------------------------------------------------------eccceeec
Confidence 99999999764311000 01345667
Q ss_pred cCCCCeeEEEeeCC-C-EEEEEECCCcEEEEECCCC---eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 352 GHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGND---HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 352 ~h~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~---~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
+|...|.+++|+|+ + +|++++.|+.|++||++++ +++..+. |...|++++|+|....+|++|+.||.|++||++
T Consensus 229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence 89999999999994 4 9999999999999999987 4666665 999999999999333489999999999999999
Q ss_pred CC-c-EEEEeccCCcEEEEEEccCCC-EEEEEecCCcEEEEeCCCCeeeeee------eEEeeccccCCCCCeEEEEEeC
Q 005646 426 SC-H-VVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDA------EICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 426 ~~-~-~~~~~~~~~~V~~v~~spdg~-~l~~gs~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~I~~l~fsp 496 (686)
+. . +..+..|...|++++|+|+++ +|++++.||.|+|||+......... ...+......|...|++++|+|
T Consensus 309 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence 73 3 345667899999999999995 6899999999999999763211100 0011112345778899999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCcceeEcCCCC-EEEEEeCCCcEEEEeCCC
Q 005646 497 QDSSKVMVSCADSQVRILQGPNVIGKYKDGK-HIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 497 ~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~-~l~sgs~Dg~V~iWd~~~ 545 (686)
+++ +|++++.||.|+||++..
T Consensus 389 ----------------------------~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 389 ----------------------------NEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp ----------------------------SSTTEEEEEETTSEEEEEEECH
T ss_pred ----------------------------CCCCEEEEEECCCCEEEeEccc
Confidence 666 788888888888888865
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-28 Score=265.13 Aligned_cols=277 Identities=11% Similarity=0.094 Sum_probs=211.2
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccc----------------------cccccccCceec-ccCCceEEEEEeeC
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSK----------------------ELSALYKGQEIQ-AHDGSILTMKFSPD 261 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~----------------------~~~~~~~~~~l~-~H~~~I~~l~fspd 261 (686)
...+++++|..+|+++.|++|+ +...... ++........+. .|...|++++|||+
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPd 96 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPI 96 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSS
T ss_pred EEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCC
Confidence 4578899999999999999997 4221110 000011111222 56778888888888
Q ss_pred CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcccc
Q 005646 262 GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFR 341 (686)
Q Consensus 262 g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (686)
|++||+++.||.|+|||.++ .
T Consensus 97 G~~LAs~s~dg~V~iwd~~~--~--------------------------------------------------------- 117 (588)
T 2j04_A 97 DDWMAVLSNNGNVSVFKDNK--M--------------------------------------------------------- 117 (588)
T ss_dssp SSCEEEEETTSCEEEEETTE--E---------------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEeCCc--e---------------------------------------------------------
Confidence 88888888888888888432 1
Q ss_pred ccCCCeEEeccCCC-----CeeEEEeeCCC-EEEEEECCCcEEEEECCCCee-------eeEe----e-CCCCeEEEEEe
Q 005646 342 ILEKPLHEFHGHSG-----EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC-------LRVF----P-HSNYVTCVHFN 403 (686)
Q Consensus 342 ~~~~~~~~l~~h~~-----~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~-------~~~~----~-h~~~V~~v~fs 403 (686)
+..+. |.. .|.+++|||+| +|++|+.||+|+|||+.++.. +.++ . |.+.|.+++|+
T Consensus 118 -----l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS 191 (588)
T 2j04_A 118 -----LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY 191 (588)
T ss_dssp -----EEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred -----eeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc
Confidence 22233 333 59999999999 999999999999999998752 5565 2 77899999999
Q ss_pred ecCCCEEEEEEcCCcEEEEecCCCcEE----EE-eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 404 PVDDNYFISGSIDGKVRIWAVLSCHVV----DW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 404 p~~~~~l~sgs~Dg~V~iwd~~~~~~~----~~-~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
| ++ +++++.|++|++||+.++... .+ ..|...|.+++|+ |+.+|+++ +++|++||+.+++....
T Consensus 192 P-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~----- 260 (588)
T 2j04_A 192 E-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL----- 260 (588)
T ss_dssp T-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-----
T ss_pred C-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-----
Confidence 9 77 889999999999999887742 23 2577899999999 68999887 69999999998775321
Q ss_pred eccccCCCCCeEEEEE--eCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCCCCcccccc
Q 005646 479 HSKKKAPCKRITGFQF--LPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKT 556 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~f--sp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~~~~~~~~~ 556 (686)
..+|...|..++| +| ++..+++++.||. ++|... .+++.||+..+++. |+++++|+...+.
T Consensus 261 ---~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d-~~~~spd~~l~a~~--d~~v~lW~~~g~~--------- 323 (588)
T 2j04_A 261 ---KTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED-ELHVTADNIIAPYL--EKKFKKWSTIWNE--------- 323 (588)
T ss_dssp ---ECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS-SEEEECCCSSHHHH--HHHHHHTTTTTTS---------
T ss_pred ---EcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec-cEEECCCceEEEEc--CCEEEEEECCCCc---------
Confidence 2258889999999 98 7889999999999 999977 46699999999886 9999999986543
Q ss_pred ccccccccCCcEEEecCCCC
Q 005646 557 IRSLERFTTNASIAIPWCGL 576 (686)
Q Consensus 557 ~~~~~~~~~~~~v~~s~~g~ 576 (686)
...++.-.....++++++|.
T Consensus 324 l~~~~~~~~I~~va~SPdG~ 343 (588)
T 2j04_A 324 FNNYETTLVIHGISLSPDGY 343 (588)
T ss_dssp SSSSCCEEEEEEEEECTTSS
T ss_pred eeeeccceEEEEEEECCCCC
Confidence 22333411256788999975
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.5e-28 Score=261.44 Aligned_cols=245 Identities=13% Similarity=0.108 Sum_probs=185.8
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
-...|.+++|+|||++|||++.|++|+ |...++. +..+.....++.|.+..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg------------------------ 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE------------------------ 64 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC------------------------
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC------------------------
Confidence 347899999999999999999999999 6555442 33444444444444433
Q ss_pred CceEEEeCCcccccc---CCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCC-----CeEE
Q 005646 329 ESACVVFPPKVFRIL---EKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSN-----YVTC 399 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~---~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~-----~V~~ 399 (686)
..+.+++. ...+..+ .|...|.+++|+|+| +||+++.||+|++||... ++..+.|.. .|.+
T Consensus 65 -------~~~~~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~s 134 (588)
T 2j04_A 65 -------FENKLDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHC 134 (588)
T ss_dssp -------CCCTTTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEE
T ss_pred -------CcceEEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEE
Confidence 01111211 1111222 468899999999999 999999999999999644 666666554 5999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcE-------E-EE----eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHV-------V-DW----VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-------~-~~----~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
++|+| ++++|++|+.||+|+|||+.++.. + .+ .+|...|.+++|+||| +++++.|++|++||+.+
T Consensus 135 vafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 135 FEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp EEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred EEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence 99999 999999999999999999998853 3 33 4566799999999999 88889999999999988
Q ss_pred CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeE--cCCCCEEE
Q 005646 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGK--YKDGKHIV 530 (686)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~--~~dg~~l~ 530 (686)
+...... ..+ ...|...|.+++|+ +..|++++ +++|++||..+ .+++ +||++.|+
T Consensus 212 ~~~~~~~-~tL---~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La 283 (588)
T 2j04_A 212 SSHQPVS-RMI---QNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILL 283 (588)
T ss_dssp SSSCCCE-EEE---ECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEE
T ss_pred Cccccce-eee---cccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE
Confidence 7632100 001 12466789999999 37888887 69999999653 2577 89999999
Q ss_pred EEeCCCcEEEEeCC
Q 005646 531 SAGEDSNVYMWNCI 544 (686)
Q Consensus 531 sgs~Dg~V~iWd~~ 544 (686)
++++||+ ++|.++
T Consensus 284 ~a~edG~-klw~~d 296 (588)
T 2j04_A 284 MSNKTSY-KVLLED 296 (588)
T ss_dssp ECSSCEE-EEEESS
T ss_pred EEcCCCC-EEEeec
Confidence 9999999 999987
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.8e-27 Score=255.00 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=185.5
Q ss_pred cccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEee--cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 247 QAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVV--EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
.+|.+.|++++|+|+|++| ++|+.||.|+|||+. +++.+
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-------------------------------------- 140 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-------------------------------------- 140 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE--------------------------------------
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee--------------------------------------
Confidence 4677789999999999996 999999999999998 55422
Q ss_pred eeccCCceEEEeCCccccccCCCeEEec--cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeee----Eee-CCC
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFH--GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR----VFP-HSN 395 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~----~~~-h~~ 395 (686)
..+. .|...|.+++|+|++ +|++++.|+.|++|++.+++... .+. |..
T Consensus 141 ------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~ 196 (450)
T 2vdu_B 141 ------------------------KLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS 196 (450)
T ss_dssp ------------------------EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS
T ss_pred ------------------------eeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccC
Confidence 2222 577899999999999 99999999999999998887653 444 999
Q ss_pred CeEEEEEeecC---CCEEEEEEcCCcEEEEecCCCcEEEE--eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 396 YVTCVHFNPVD---DNYFISGSIDGKVRIWAVLSCHVVDW--VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 396 ~V~~v~fsp~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~--~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
.|++++|+| + +++|++|+.|++|++||+++++.+.. .+|...|++++|+ ++++|++++.|+.|++||+.++++
T Consensus 197 ~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 197 MLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred ceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999999 8 88999999999999999999887643 3688999999999 999999999999999999998876
Q ss_pred eeeeeEEe--e---------------ccccCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEeC--Cc------------
Q 005646 471 ELDAEICV--H---------------SKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQG--PN------------ 518 (686)
Q Consensus 471 ~~~~~~~~--~---------------~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D~~I~iwd~--~~------------ 518 (686)
........ . .........|.++.|+| ++.+|++++ .|+.|++|+. .+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~ 353 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF 353 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc
Confidence 54322100 0 00002345699999999 788888888 8999999998 21
Q ss_pred -----ceeEcCCCCEEEEEeC------CCcEEEEeCCCC
Q 005646 519 -----VIGKYKDGKHIVSAGE------DSNVYMWNCIGH 546 (686)
Q Consensus 519 -----~~~~~~dg~~l~sgs~------Dg~V~iWd~~~~ 546 (686)
.++++|++.++++++. +..|.||.++..
T Consensus 354 ~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 354 PYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 2556775444444443 556888887654
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.1e-27 Score=257.35 Aligned_cols=224 Identities=18% Similarity=0.207 Sum_probs=149.5
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
|...+....+++++.+||+|+.|++|+|||+.+++.....
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~---------------------------------------- 127 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH---------------------------------------- 127 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE----------------------------------------
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee----------------------------------------
Confidence 3444444455567789999999999999999887633211
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC--------CC-EEEEEECCCcEEEEECCCCeeeeE-eeCCCCeE
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--------NN-YLLSASIDKTVRLWRVGNDHCLRV-FPHSNYVT 398 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--------~~-~L~s~s~Dg~V~iWd~~~~~~~~~-~~h~~~V~ 398 (686)
++..+.||.+.|.+++|+| ++ +|++++.|++|+|||+.++.++.. +.|...|.
T Consensus 128 -----------------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~ 190 (393)
T 4gq1_A 128 -----------------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI 190 (393)
T ss_dssp -----------------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE
T ss_pred -----------------eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE
Confidence 2334578999999999997 66 999999999999999988776554 45999999
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE--------------------------EeccCCcEEEEEEc-cCCCEE
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--------------------------WVDIRQIVTAVCYR-PDGQGG 451 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~--------------------------~~~~~~~V~~v~~s-pdg~~l 451 (686)
+++|+|.+.++|++|+.||+|++||+++++... ...|...+.++.|. |||+.+
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 999999444689999999999999998875321 12455678888886 799999
Q ss_pred EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcC--CCCEE
Q 005646 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK--DGKHI 529 (686)
Q Consensus 452 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~--dg~~l 529 (686)
++++.|+++++||+...+.... ...|...+..+.+.| +...+..... .....+++ ++.++
T Consensus 271 ~s~s~d~~i~vwd~~~~~~~~~--------l~~~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~ 332 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANNDYNE--------ISDSTMKLGPKNLLP-NVQGISLFPS---------LLGACPHPRYMDYFA 332 (393)
T ss_dssp EEECTTSEEEEEEC---------------------------CCSC-SEEEECSSCC---------SSCCEECSSCTTEEE
T ss_pred EEEeCCCCEEEEECccCCCCce--------EeeecCccccEEEcc-ccccccccCc---------ceeEEEccCCCCEEE
Confidence 9999999999999987654321 122334455666666 2211111111 11122333 66788
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 005646 530 VSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 530 ~sgs~Dg~V~iWd~~~~~ 547 (686)
++|+.||+|+|||+.++.
T Consensus 333 ~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 333 TAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EEETTTTEEEEEETTCTT
T ss_pred EEECCCCEEEEEECCCCc
Confidence 889999999999998765
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=6.3e-27 Score=254.92 Aligned_cols=268 Identities=20% Similarity=0.293 Sum_probs=207.5
Q ss_pred cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
.+|...|+++.| ++++|++|+.||.|++||+.+++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~------------------------------------------- 164 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE------------------------------------------- 164 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-------------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-------------------------------------------
Confidence 357778999887 78999999999999999997765
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEee
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP 404 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp 404 (686)
.+..+.+|.+.|.+++| ++ +|++|+.||+|++||+.+++++..+. |...|.+++|++
T Consensus 165 -------------------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 223 (435)
T 1p22_A 165 -------------------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN 223 (435)
T ss_dssp -------------------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT
T ss_pred -------------------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC
Confidence 34556789999999999 45 99999999999999999999998887 999999999964
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEE----EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~----~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 480 (686)
++|++|+.||.|++||+.++... ....|...|++++| +++++++|+.||.|++||+.+++....
T Consensus 224 ---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~------- 291 (435)
T 1p22_A 224 ---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT------- 291 (435)
T ss_dssp ---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE-------
T ss_pred ---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE-------
Confidence 69999999999999999987643 45578889999999 788999999999999999998765432
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc-------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~-------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
...|...|.++.|.+ ..+++++.|+.|++||..+. .+...++++|++|+.||.|+|||+.++.
T Consensus 292 -~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 292 -LNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp -EECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred -EcCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence 234667899999954 79999999999999997642 1222389999999999999999997654
Q ss_pred CCCccccccccccccccCCcEEEecCCCCcCCCCCCCCcccccCCCCCcccccCCCccccCccccccCCCCCCCCCCCCc
Q 005646 548 EPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 627 (686)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~g~~l~~~~~~~~~~~~~spd~~~~~~~~~~~s~d~~~~~W~~~~ 627 (686)
.+..... ...+..+..|...+.++..+ +..+++++.|+.+.+|+...
T Consensus 368 ~~~~~~~-----------------------------~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 368 DPRAPAG-----------------------------TLCLRTLVEHSGRVFRLQFD----EFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp STTSCTT-----------------------------TTEEEEECCCSSCCCCEEEC----SSCEEECCSSSEEEEEC---
T ss_pred Ccccccc-----------------------------chheeeccCCCCCeEEEEeC----CCEEEEEeCCCEEEEEECCC
Confidence 2111000 11122233333333333334 45677888999999999665
Q ss_pred CC
Q 005646 628 LP 629 (686)
Q Consensus 628 ~~ 629 (686)
.+
T Consensus 415 ~~ 416 (435)
T 1p22_A 415 DP 416 (435)
T ss_dssp --
T ss_pred CC
Confidence 54
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=1.5e-26 Score=249.16 Aligned_cols=229 Identities=17% Similarity=0.229 Sum_probs=187.8
Q ss_pred ceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 252 SILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 252 ~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
....++++|+.. ++++++.||.|+||++......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~--------------------------------------------- 70 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV--------------------------------------------- 70 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC---------------------------------------------
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC---------------------------------------------
Confidence 344688888764 3446789999999998654311
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEEEECCCcEEEEECCCC-------eeeeEee-CCCCeEEE
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGND-------HCLRVFP-HSNYVTCV 400 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~-------~~~~~~~-h~~~V~~v 400 (686)
...+..+.+|.+.|.+++|+| ++ +|++++.|++|+|||+.++ +++..+. |...|+++
T Consensus 71 -------------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 137 (402)
T 2aq5_A 71 -------------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137 (402)
T ss_dssp -------------CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEE
T ss_pred -------------CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEE
Confidence 023445678999999999999 77 9999999999999999987 5566666 99999999
Q ss_pred EEeecCC-CEEEEEEcCCcEEEEecCCCcEEEEe---ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeE
Q 005646 401 HFNPVDD-NYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 401 ~fsp~~~-~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 476 (686)
+|+| ++ ++|++|+.||+|++||+++++.+... .|...|++++|+|+|++|++++.||.|++||+++++.....
T Consensus 138 ~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-- 214 (402)
T 2aq5_A 138 AWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK-- 214 (402)
T ss_dssp EECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE--
T ss_pred EECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee--
Confidence 9999 65 79999999999999999999887554 58899999999999999999999999999999987754321
Q ss_pred EeeccccCCCC-CeEEEEEeCCCCCeEEEE---eCCCcEEEEeCCc-----------------ceeEcCCCCEEEE-EeC
Q 005646 477 CVHSKKKAPCK-RITGFQFLPQDSSKVMVS---CADSQVRILQGPN-----------------VIGKYKDGKHIVS-AGE 534 (686)
Q Consensus 477 ~~~~~~~~~~~-~I~~l~fsp~~~~~l~~~---s~D~~I~iwd~~~-----------------~~~~~~dg~~l~s-gs~ 534 (686)
...|.. .+..+.|+| ++.+|+++ +.|+.|++||..+ .++++|++++|++ |+.
T Consensus 215 -----~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 215 -----DRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp -----ECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred -----ccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence 123433 489999999 78888888 7999999999653 2567889999975 557
Q ss_pred CCcEEEEeCCCCC
Q 005646 535 DSNVYMWNCIGHE 547 (686)
Q Consensus 535 Dg~V~iWd~~~~~ 547 (686)
||.|++|++.+++
T Consensus 289 dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 289 DSSIRYFEITSEA 301 (402)
T ss_dssp CSCEEEEEECSST
T ss_pred CCeEEEEEecCCC
Confidence 9999999998865
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.6e-26 Score=249.24 Aligned_cols=265 Identities=11% Similarity=0.088 Sum_probs=216.4
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
...+++++..+++++.++.|++|+...... ........+.+|.+.|++++|+|+++++++++.|+.|++||+.+++.
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~- 203 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQT--VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY- 203 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCE--EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE-
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeE--eeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE-
Confidence 356667556777788889999999875432 22222235678999999999999999999999999999999977652
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
+..+..|...+.+++|+|+
T Consensus 204 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 204 -------------------------------------------------------------KATVDLTGKWSKILLYDPI 222 (433)
T ss_dssp -------------------------------------------------------------EEEEECSSSSEEEEEEETT
T ss_pred -------------------------------------------------------------EEEEcCCCCCeeEEEEcCC
Confidence 3344568889999999999
Q ss_pred C-EE-EEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE--------cCCcEEEEecCCCcEEEEecc
Q 005646 366 N-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS--------IDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 366 ~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs--------~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
+ +| ++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++|++++ .||.|++||+.+++.+....+
T Consensus 223 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~ 301 (433)
T 3bws_A 223 RDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP 301 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC
Confidence 9 66 455589999999999999998888777899999999 899999888 488999999999998888877
Q ss_pred CCcEEEEEEccCCCEE-EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC-------
Q 005646 436 RQIVTAVCYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA------- 507 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l-~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~------- 507 (686)
...+.+++|+|+++.+ ++++.++.|++||+.+++..... .+...+.+++|+| ++..+++++.
T Consensus 302 ~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~---------~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~ 371 (433)
T 3bws_A 302 PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI---------PVFDKPNTIALSP-DGKYLYVSCRGPNHPTE 371 (433)
T ss_dssp EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE---------ECSSSEEEEEECT-TSSEEEEEECCCCCTTT
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe---------cCCCCCCeEEEcC-CCCEEEEEecCCCcccc
Confidence 7889999999999755 55688999999999987754321 1346699999999 7777777776
Q ss_pred --------CCcEEEEeCCc--------------ceeEcCCCCEEEEEeC-CCcEEEEeCCC
Q 005646 508 --------DSQVRILQGPN--------------VIGKYKDGKHIVSAGE-DSNVYMWNCIG 545 (686)
Q Consensus 508 --------D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~-Dg~V~iWd~~~ 545 (686)
||.|++||..+ .++++|+|++|++++. |+.|++|+++.
T Consensus 372 ~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 372 GYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999753 3678899999998875 99999999864
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=4.2e-26 Score=244.05 Aligned_cols=251 Identities=12% Similarity=0.149 Sum_probs=204.1
Q ss_pred ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCeeeeeeccCCC
Q 005646 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 215 ~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
.+++++.++.|++|+...... .+.+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~-------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~------ 69 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKV-------TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------ 69 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE------
T ss_pred EEEEcCCCCEEEEEECCCCeE-------EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE------
Confidence 467788999999999865432 23455554 58999999999987 6777999999999988764322
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SA 371 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~ 371 (686)
+..| ..+.+++|+|++ +|+ ++
T Consensus 70 --------------------------------------------------------~~~~-~~v~~~~~spdg~~l~~~~ 92 (391)
T 1l0q_A 70 --------------------------------------------------------VPAG-SSPQGVAVSPDGKQVYVTN 92 (391)
T ss_dssp --------------------------------------------------------EECS-SSEEEEEECTTSSEEEEEE
T ss_pred --------------------------------------------------------EECC-CCccceEECCCCCEEEEEE
Confidence 2223 389999999999 664 55
Q ss_pred ECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE-EEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE
Q 005646 372 SIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
+.++.|++||+.+++.+..+.+...+.+++|+| ++++| ++++.|+.|++||+.+++.+........+..++|+|+|+.
T Consensus 93 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~ 171 (391)
T 1l0q_A 93 MASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK 171 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred CCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCE
Confidence 567999999999999999998888899999999 88866 7888899999999999998877777778899999999998
Q ss_pred E-EEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe---CCCcEEEEeCCc--------
Q 005646 451 G-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC---ADSQVRILQGPN-------- 518 (686)
Q Consensus 451 l-~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s---~D~~I~iwd~~~-------- 518 (686)
+ ++++.++.|++||+.+++..... .+...+.+++|+| ++..+++++ .++.|++||..+
T Consensus 172 l~~~~~~~~~v~~~d~~~~~~~~~~---------~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~ 241 (391)
T 1l0q_A 172 VYVANFDSMSISVIDTVTNSVIDTV---------KVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIP 241 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEE---------ECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEE---------ecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEe
Confidence 7 56778999999999987654321 1235689999999 777777777 789999999753
Q ss_pred ------ceeEcCCCCEE-EEEeCCCcEEEEeCCCCC
Q 005646 519 ------VIGKYKDGKHI-VSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ------~~~~~~dg~~l-~sgs~Dg~V~iWd~~~~~ 547 (686)
.++++|++++| ++++.|+.|++||+.+++
T Consensus 242 ~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 242 VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 36788999988 677899999999998865
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=7.9e-27 Score=247.14 Aligned_cols=266 Identities=11% Similarity=0.100 Sum_probs=190.1
Q ss_pred ceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
+++.+|...|++++|+|||++||+|+.|+ ++||++.+++........ ....+.+.. .....+
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~-------------~~~~~~-- 74 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLH-------------RTNYVA-- 74 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECT-------------TSSEEE--
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcC-------------CCCEEE--
Confidence 34578999999999999999999998775 789999877655443322 122222211 111110
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCC-eeeeEeeCCCCeEEEEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHF 402 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~-~~~~~~~h~~~V~~v~f 402 (686)
+..+.+..+.+|+ ...........|...|.++++++ ..++.+ .|+.|++||+.++ +.+..+.. ....+++
T Consensus 75 ~~~~~d~~v~iWd-----~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~ 145 (355)
T 3vu4_A 75 FVTGVKEVVHIWD-----DVKKQDVSRIKVDAPVKDLFLSR-EFIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEF 145 (355)
T ss_dssp EECSSTTEEEEEE-----TTTTEEEEEEECSSCEEEEEECS-SEEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEE
T ss_pred EEECCccEEEEEE-----CCCCcEEEEEECCCceEEEEEcC-CEEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEE
Confidence 1112222333333 22345555567788888888853 555554 4778999998887 66666554 4455666
Q ss_pred eecCCCEEEE--EEcCCcEEEEecCCCc-----------------EEEEeccCCcEEEEEEccCCCEEEEEecCCc-EEE
Q 005646 403 NPVDDNYFIS--GSIDGKVRIWAVLSCH-----------------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRF 462 (686)
Q Consensus 403 sp~~~~~l~s--gs~Dg~V~iwd~~~~~-----------------~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~-i~i 462 (686)
+| .+++. |+.||.|++||+.++. ...+..|...|++++|+|+|++|++|+.||+ |++
T Consensus 146 s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 146 SN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp ET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred Ec---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 65 56665 5789999999999865 5567789999999999999999999999998 999
Q ss_pred EeCCCCeeeeeeeEEeeccccC-CCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC------------------------
Q 005646 463 YNVSDNHLELDAEICVHSKKKA-PCKRITGFQFLPQDSSKVMVSCADSQVRILQGP------------------------ 517 (686)
Q Consensus 463 wd~~~~~~~~~~~~~~~~~~~~-~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~------------------------ 517 (686)
||+.+++..... ..+ |...|++++|+| ++.+|++++.|+.|++||..
T Consensus 223 wd~~~~~~~~~~-------~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T 3vu4_A 223 FKTEDGVLVREF-------RRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWS 294 (355)
T ss_dssp EETTTCCEEEEE-------ECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred EECCCCcEEEEE-------EcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccc
Confidence 999987754321 212 678899999999 88999999999999999964
Q ss_pred --------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 518 --------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 518 --------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..++|++|+++|++++.||.+++|++..++
T Consensus 295 ~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 295 LCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 335788999999999999999999998755
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=3.4e-26 Score=248.83 Aligned_cols=216 Identities=22% Similarity=0.312 Sum_probs=174.1
Q ss_pred ceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
....+|.+.|++++|+|+ +.+||+++.||.|+||++.+.......
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------------------------------- 167 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------------------------------- 167 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT----------------------------------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc----------------------------------
Confidence 345689999999999997 789999999999999999763210000
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCee-------eeEe-e
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVF-P 392 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~-------~~~~-~ 392 (686)
.....++..+.+|...|.+++|+|++ +|++++.||+|++||+.++.. ...+ .
T Consensus 168 ------------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 229 (430)
T 2xyi_A 168 ------------------SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 229 (430)
T ss_dssp ------------------TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC
T ss_pred ------------------cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC
Confidence 00014567788999999999999987 899999999999999987432 3344 3
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC---cE-EEEeccCCcEEEEEEccCCC-EEEEEecCCcEEEEeCCC
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC---HV-VDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~---~~-~~~~~~~~~V~~v~~spdg~-~l~~gs~dg~i~iwd~~~ 467 (686)
|...|++++|+|.++.+|++++.||.|++||++++ +. .....|...|++++|+|+++ ++++|+.||.|++||++.
T Consensus 230 h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 99999999999977889999999999999999986 23 35557889999999999997 688999999999999987
Q ss_pred CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 005646 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDG-KHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~ 546 (686)
...... ....|...|++++|+| ++ .+|++++.||.|+|||+...
T Consensus 310 ~~~~~~-------~~~~h~~~v~~i~~sp----------------------------~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 310 LKLKLH-------SFESHKDEIFQVQWSP----------------------------HNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp TTSCSE-------EEECCSSCEEEEEECS----------------------------SCTTEEEEEETTSCCEEEEGGGT
T ss_pred CCCCeE-------EeecCCCCEEEEEECC----------------------------CCCCEEEEEeCCCcEEEEeCCCC
Confidence 432111 1234668899999999 55 57999999999999999764
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=2.9e-27 Score=254.19 Aligned_cols=236 Identities=14% Similarity=0.142 Sum_probs=171.2
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee--------CCCEEEEEeCCCcEEEEE
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--------DGQYLASAGDDGVVRLWQ 278 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------dg~~Lasgs~Dg~I~vWd 278 (686)
..+.+++..+++++.|++|+||+........ ......+.+|.+.|++++|+| ||++|||||.|++|+|||
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~--~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIIT--QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEE--EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccce--eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 4456667789999999999999987653321 222345789999999999998 899999999999999999
Q ss_pred eecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
+.++. ++..+.+|...|.
T Consensus 173 ~~~~~--------------------------------------------------------------~~~~~~~~~~~v~ 190 (393)
T 4gq1_A 173 LTDEG--------------------------------------------------------------PILAGYPLSSPGI 190 (393)
T ss_dssp EETTE--------------------------------------------------------------EEEEEEECSSCEE
T ss_pred CCCCc--------------------------------------------------------------eeeeecCCCCCcE
Confidence 98765 2344456889999
Q ss_pred EEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEe--------------------------eCCCCeEEEEEeecCCCEE
Q 005646 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF--------------------------PHSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 359 ~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~--------------------------~h~~~V~~v~fsp~~~~~l 410 (686)
+++|+|++ +|++++.|++|++||+.+++..... .|...|.++.|++.++..|
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 99999987 7999999999999999887644322 2677899999985599999
Q ss_pred EEEEcCCcEEEEecCCCcEEE-EeccCCcEE------------------EEEEcc--CCCEEEEEecCCcEEEEeCCCCe
Q 005646 411 ISGSIDGKVRIWAVLSCHVVD-WVDIRQIVT------------------AVCYRP--DGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~~-~~~~~~~V~------------------~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
++++.|+++++||+.+++... +..+...+. ...|+| ++.++++|+.||+|++||+.++.
T Consensus 271 ~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred EEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 999999999999998765432 112222222 233444 44467778899999999998876
Q ss_pred eeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.... ...|..+|.+++|+| ||++||++++|| +.+|.+
T Consensus 351 ~~~~--------~~~~~~~V~svafsp----------------------------dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 351 SNSI--------PIQLGMPIVDFCWHQ----------------------------DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CCEE--------EEECSSCEEEEEECT----------------------------TSSEEEEEESSE-EEEEEE
T ss_pred EEEE--------ecCCCCcEEEEEEcC----------------------------CCCEEEEEeCCC-eEEEEE
Confidence 5432 123557899999999 888888887665 555544
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.9e-27 Score=271.93 Aligned_cols=250 Identities=16% Similarity=0.237 Sum_probs=203.7
Q ss_pred cccCcce--eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC--CCEEEEEeCCCcEEE
Q 005646 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYLASAGDDGVVRL 276 (686)
Q Consensus 201 ~~~~~~~--~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~v 276 (686)
.|...+. .|+++++.+++|+.||.|+||++..... .....+.+|.++|++++|+|+ +++|++|+.||+|++
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-----~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-----ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 4555554 4567788999999999999999864322 223567889999999999998 999999999999999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++. ..+..+.+|...
T Consensus 82 wd~~~~~~------------------------------------------------------------~~~~~~~~h~~~ 101 (753)
T 3jro_A 82 WKEENGRW------------------------------------------------------------SQIAVHAVHSAS 101 (753)
T ss_dssp EEEETTEE------------------------------------------------------------EEEEEECCCSSC
T ss_pred EECCCCcc------------------------------------------------------------cccccccCCCCC
Confidence 99987641 134556679999
Q ss_pred eeEEEeeCC--C-EEEEEECCCcEEEEECCCCeee--eEe-eCCCCeEEEEEeec------------CCCEEEEEEcCCc
Q 005646 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHCL--RVF-PHSNYVTCVHFNPV------------DDNYFISGSIDGK 418 (686)
Q Consensus 357 V~~l~~s~~--~-~L~s~s~Dg~V~iWd~~~~~~~--~~~-~h~~~V~~v~fsp~------------~~~~l~sgs~Dg~ 418 (686)
|.+++|+|+ + +|++++.||+|++||+.++... ..+ .|...|++++|+|. ++.+|++|+.||+
T Consensus 102 V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred eEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 999999998 7 9999999999999999887432 223 39999999999994 4899999999999
Q ss_pred EEEEecCCCc----EE-EEeccCCcEEEEEEccC---CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 419 VRIWAVLSCH----VV-DWVDIRQIVTAVCYRPD---GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 419 V~iwd~~~~~----~~-~~~~~~~~V~~v~~spd---g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
|++||++++. +. .+..|...|++++|+|+ ++++++|+.||.|++||+.++...... .......|...|+
T Consensus 182 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~---~~~~~~~~~~~v~ 258 (753)
T 3jro_A 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK---TLLKEEKFPDVLW 258 (753)
T ss_dssp EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBC---CBSSSSCCSSCCC
T ss_pred EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCccee---EEeccCCCCCceE
Confidence 9999998763 32 45578899999999999 999999999999999999876422111 1112345778899
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 491 GFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
+++|+| ++..+++++.||.|++|+....
T Consensus 259 ~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 259 RASWSL-SGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CEEECT-TTCCEEEECSSSCEECCBCCSS
T ss_pred EEEEcC-CCCEEEEEcCCCEEEEEecCCC
Confidence 999999 8899999999999999998753
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-26 Score=243.96 Aligned_cols=218 Identities=14% Similarity=0.103 Sum_probs=175.2
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEe
Q 005646 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (686)
Q Consensus 256 l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (686)
..+.+++.+|+||+.||+|++||+.+++.+..+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------------------------------------- 75 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------------------------------------------- 75 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----------------------------------------------
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----------------------------------------------
Confidence 3455688899999999999999998876433221
Q ss_pred CCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECC---------CCeeeeEee--CCCCeEEEEEee
Q 005646 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVG---------NDHCLRVFP--HSNYVTCVHFNP 404 (686)
Q Consensus 336 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~---------~~~~~~~~~--h~~~V~~v~fsp 404 (686)
...|.++.|+|+ +++++.|++|++|+.. +++.+..+. |...|.+++|+|
T Consensus 76 ------------------~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 135 (343)
T 3lrv_A 76 ------------------TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHN 135 (343)
T ss_dssp ------------------EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC
T ss_pred ------------------cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCC
Confidence 245666677777 8999999999999665 555555554 678899999998
Q ss_pred -cCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 405 -VDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 405 -~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
.++++|++|+.||+|++||+++++.+... .+...+++++|+|+|++|++|+.||.|++||+++++.... . .
T Consensus 136 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~---~---~ 209 (343)
T 3lrv_A 136 EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS---R---F 209 (343)
T ss_dssp ---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE---E---C
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc---E---E
Confidence 35789999999999999999999887544 3455799999999999999999999999999998764310 0 1
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------------ceeEcCCCCEEEEEeC-CCcEEE
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------------VIGKYKDGKHIVSAGE-DSNVYM 540 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------------~~~~~~dg~~l~sgs~-Dg~V~i 540 (686)
...|...|++++|+| ++.+|++++ |+.|++||..+ .++|+|+|++|++++. |+.|+|
T Consensus 210 ~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 210 PVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI 287 (343)
T ss_dssp CCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEE
Confidence 123778999999999 788999999 55999999642 2788999999999998 999999
Q ss_pred EeCCCCC
Q 005646 541 WNCIGHE 547 (686)
Q Consensus 541 Wd~~~~~ 547 (686)
|++....
T Consensus 288 ~~~~~~~ 294 (343)
T 3lrv_A 288 YKFDKKT 294 (343)
T ss_dssp EEECTTT
T ss_pred EEEcccc
Confidence 9997654
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=1.2e-25 Score=243.97 Aligned_cols=259 Identities=10% Similarity=0.071 Sum_probs=199.2
Q ss_pred eeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcc
Q 005646 218 FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSC 297 (686)
Q Consensus 218 ~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~ 297 (686)
.++.++.+.||.++.....+ .....+..| ..+.+++|+|++.++++++.|+.|++||+.+++....+.
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------- 161 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITH---RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP-------- 161 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSE---EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC--------
T ss_pred cccCCCceEEEEECCCCCcc---eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC--------
Confidence 45667766677665422111 112234444 346699999988888888899999999998876432211
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCc
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT 376 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~ 376 (686)
...+.+|...|.+++|++++ ++++++.|+.
T Consensus 162 -------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 162 -------------------------------------------------PEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp -------------------------------------------------CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred -------------------------------------------------cccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 11235788999999999999 8899999999
Q ss_pred EEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEE-EEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEE
Q 005646 377 VRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG 454 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~-sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~g 454 (686)
|++||+.+++++..+. |...+.+++|+| ++++++ +++.|+.|++||+++++.+........+.+++|+|+|+.++++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence 9999999999988887 889999999999 888775 5558999999999999988877777889999999999999998
Q ss_pred e--------cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------
Q 005646 455 S--------MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-------- 518 (686)
Q Consensus 455 s--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-------- 518 (686)
+ .||.|++||+.+++...... +...+.+++|+|++..++++++.|+.|++||..+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG---------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE---------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc---------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 8 48899999999886543221 1235889999994434566678899999999653
Q ss_pred ------ceeEcCCCCEEEEEeC---------------CCcEEEEeCCCCC
Q 005646 519 ------VIGKYKDGKHIVSAGE---------------DSNVYMWNCIGHE 547 (686)
Q Consensus 519 ------~~~~~~dg~~l~sgs~---------------Dg~V~iWd~~~~~ 547 (686)
.++++|+|++|++++. ||.|++||+.+++
T Consensus 343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 3667889988888876 4688888876643
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.8e-25 Score=244.52 Aligned_cols=275 Identities=12% Similarity=0.007 Sum_probs=191.6
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe---eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE---RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
..+|.+++|+|+|++|+++ .++.|++||+.+++ .+..+..+........+................... ..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 77 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK-LK---- 77 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccc-cc----
Confidence 3578999999999977766 46899999999998 555554332100000000000000000000000000 00
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE-EEEECCCcEEEEECC--CCeeeeEee---CCCCeEE
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVG--NDHCLRVFP---HSNYVTC 399 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~--~~~~~~~~~---h~~~V~~ 399 (686)
....... ..+.... ..+.....+|.+.|.+++|+|++ +| ++++.|++|+|||+. +++++..+. |...|++
T Consensus 78 ~~~~~~~--~~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~ 154 (450)
T 2vdu_B 78 SNKGDSI--KRTAAKV-PSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNA 154 (450)
T ss_dssp -------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEE
T ss_pred cCcCccc--cccCccc-cCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceE
Confidence 0000000 0000000 01223445788899999999999 65 899999999999999 888888774 7899999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEE-----EEeccCCcEEEEEEccC---CCEEEEEecCCcEEEEeCCCCeee
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPD---GQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-----~~~~~~~~V~~v~~spd---g~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
++|+| ++++|++|+.||.|++|++.++... .+..|...|++++|+|+ +++|++|+.|+.|++||+.+++..
T Consensus 155 ~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 155 ISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 99999 9999999999999999999887654 45678899999999999 999999999999999999877643
Q ss_pred eeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------------------------
Q 005646 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------------------------- 518 (686)
Q Consensus 472 ~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------------------------- 518 (686)
.. ....|...|++++|+ ++.+|++++.|+.|++||..+
T Consensus 234 ~~-------~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 234 DK-------WLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp EE-------ECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred ee-------eecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 21 134577889999999 789999999999999999653
Q ss_pred -------ceeEcCCCCEEEEEe-CCCcEEEEeC
Q 005646 519 -------VIGKYKDGKHIVSAG-EDSNVYMWNC 543 (686)
Q Consensus 519 -------~~~~~~dg~~l~sgs-~Dg~V~iWd~ 543 (686)
.++++|++++|++++ .|+.|+||++
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 235667899999999 8999999999
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=3.3e-25 Score=226.60 Aligned_cols=243 Identities=9% Similarity=0.076 Sum_probs=166.2
Q ss_pred cceeeccceEEEEEcCCccccccccccCceecccC-------------------------CceEEEEEeeC----CCEEE
Q 005646 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD-------------------------GSILTMKFSPD----GQYLA 266 (686)
Q Consensus 216 l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-------------------------~~I~~l~fspd----g~~La 266 (686)
.+.......|++|+..... .....++++.|+ ..|+.|+|+|| +++++
T Consensus 56 ~~~~~~~~~v~lw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~ 131 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAW----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLL 131 (356)
T ss_dssp EEEEEESSEEEEEEESSSS----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEE
T ss_pred EEEEeccceEEEcccCCCc----cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEE
Confidence 4555667789999876641 111123333343 36778888888 88999
Q ss_pred EEeCCCcEEEEEeecCeeeeee-ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCC
Q 005646 267 SAGDDGVVRLWQVVEDERLTEV-DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (686)
Q Consensus 267 sgs~Dg~I~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (686)
++|.+ +++|++.+++.+... ..+... +..+.+.++ ++
T Consensus 132 s~g~~--~~v~~l~~g~lv~ss~~g~d~~-------------V~~~~~s~d---------------------------G~ 169 (356)
T 2w18_A 132 KSGNI--KAVLGLTKRRLVSSSGTLSDQQ-------------VEVMTFAED---------------------------GG 169 (356)
T ss_dssp EEEEE--EEEEEETTTEEEEEESSSTTCE-------------EEEEEECTT---------------------------SC
T ss_pred eCCCe--EEEEecCCCcEEEecccCCCCc-------------EEEEEECCC---------------------------Cc
Confidence 98854 888998777755442 222211 111111111 13
Q ss_pred CeEEeccCCCCeeEEEeeC---CC-EEEEEECCCcEEEEECCCCeeeeEee-C---CCCeEEEEEeecCCCEE-------
Q 005646 346 PLHEFHGHSGEILDLSWSK---NN-YLLSASIDKTVRLWRVGNDHCLRVFP-H---SNYVTCVHFNPVDDNYF------- 410 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~---~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h---~~~V~~v~fsp~~~~~l------- 410 (686)
.+..+.+|...+..++|++ ++ +|++++.|++|+|||+.++++++++. | ...|.+++|+| ++.++
T Consensus 170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~ 248 (356)
T 2w18_A 170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPC 248 (356)
T ss_dssp EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC---
T ss_pred eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCC
Confidence 4556678999999999999 55 99999999999999999999999996 3 34688889999 88876
Q ss_pred -----EEEEcCCcEEEEecCCCcEEEEe------ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 411 -----ISGSIDGKVRIWAVLSCHVVDWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 411 -----~sgs~Dg~V~iwd~~~~~~~~~~------~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
++|+.|++|++||..+++.+... +|...+.+. +.++..+++|+.||+|+|||+.++++...
T Consensus 249 ~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~t------ 320 (356)
T 2w18_A 249 AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTAL------ 320 (356)
T ss_dssp ---------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCSEEEE------
T ss_pred CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEE------
Confidence 66889999999999999876543 333344333 33478999999999999999999886542
Q ss_pred ccccCCCCCe-EEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 480 SKKKAPCKRI-TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 480 ~~~~~~~~~I-~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..+|...+ ..++|+| ||++|++|+.|++|||||+
T Consensus 321 --L~gH~~~vvs~vafSP----------------------------DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 321 --LPPVSDQHWSFVKWSG----------------------------TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --ECCC--CCCCEEEECS----------------------------SSSEEEEECTTSCEEEEEE
T ss_pred --ecCCCCCeEEEEEECC----------------------------CCCEEEEEECCCcEEEecC
Confidence 12344444 4689999 8888888888888888885
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=2.9e-23 Score=212.27 Aligned_cols=246 Identities=15% Similarity=0.163 Sum_probs=155.6
Q ss_pred eEEEEEeeCCC---EEEEEeCCCcEEEEEeecC---eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeec
Q 005646 253 ILTMKFSPDGQ---YLASAGDDGVVRLWQVVED---ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (686)
Q Consensus 253 I~~l~fspdg~---~Lasgs~Dg~I~vWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (686)
+.+|-|-..|- .++++++ .+|++|+..++ ++++.+.+++.++..+.+.++..+.+. +....-....+..+.-
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC-VALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE-EEECSSSEEEEEEECC
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee-eeeccccccceEEEEE
Confidence 44555544333 6888887 58999999998 888888888877766666654433222 2222222222222222
Q ss_pred cCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEE---CCCcEEEEECC-CCeeeeEee-CCCCeEEEE
Q 005646 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS---IDKTVRLWRVG-NDHCLRVFP-HSNYVTCVH 401 (686)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s---~Dg~V~iWd~~-~~~~~~~~~-h~~~V~~v~ 401 (686)
+.+... ......-.+|...|..+ +++.+++++ .|++|++|++. .++.+..+. |...++.++
T Consensus 120 spd~~~-----------~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 120 SSDDES-----------EKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp -----------------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred CCCccc-----------cccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 211000 01111113455555554 566555554 49999999994 477777666 999999999
Q ss_pred Eeec--CCCEEEEEEcCCcEEEEecCCCcEEEEec-cC---CcEEEEEEccCCCEE------------EEEecCCcEEEE
Q 005646 402 FNPV--DDNYFISGSIDGKVRIWAVLSCHVVDWVD-IR---QIVTAVCYRPDGQGG------------IVGSMMGDCRFY 463 (686)
Q Consensus 402 fsp~--~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~---~~V~~v~~spdg~~l------------~~gs~dg~i~iw 463 (686)
|+|. ++.+|++|+.|++|+|||+.+++++..+. +. ..+.+++|+|+|+++ ++|+.|++|++|
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 9985 56999999999999999999999876553 33 357788999999987 557789999999
Q ss_pred eCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
|..+++......+.+ ..+|...+ +.+ ..++.++++|+.|++|+|||+
T Consensus 266 d~~tgk~l~v~~~~~---p~Gh~~~~-------------lsg-----------------~~sg~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 266 NPKTTLSVGVMLYCL---PPGQAGRF-------------LEG-----------------DVKDHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp ETTTTEEEEEEEECC---CTTCCCCE-------------EEE-----------------EEETTEEEEEETTSCEEEEET
T ss_pred ECCCCEEEEEEEeec---cCCCccee-------------Ecc-----------------ccCCCEEEEEcCCCcEEEEEC
Confidence 998887543111100 01111111 111 114788999999999999999
Q ss_pred CCCC
Q 005646 544 IGHE 547 (686)
Q Consensus 544 ~~~~ 547 (686)
.+++
T Consensus 313 ~tGk 316 (356)
T 2w18_A 313 LLGQ 316 (356)
T ss_dssp TTCS
T ss_pred CCCc
Confidence 8865
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=3.5e-23 Score=219.04 Aligned_cols=273 Identities=13% Similarity=0.141 Sum_probs=186.8
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCee
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDER 284 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~~ 284 (686)
..+|++++..+++|+.++ ++||+....... +..+...+..+++.++++++ ++++.|++|+|||+.+++.
T Consensus 24 ~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 24 DYEFNQDQSCLILSTLKS-FEIYNVHPVAHI---------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp EEEECTTSSEEEEECSSE-EEEEEETTEEEE---------EEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred EEEECCCCCEEEEEcCCE-EEEEecCCccee---------eeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 456778888888888765 789997643221 11222358888999988887 5677889999999999998
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+..+.... .+.++.+ .+..... . .+..+.+|+.... .+.+..+.. ....+++++
T Consensus 94 ~~~~~~~~-~v~~v~~-------------~~~~~~~--~----~~~~i~i~d~~~~---~~~~~~~~~---~~~~~~~s~ 147 (355)
T 3vu4_A 94 VSRIKVDA-PVKDLFL-------------SREFIVV--S----YGDVISVFKFGNP---WKRITDDIR---FGGVCEFSN 147 (355)
T ss_dssp EEEEECSS-CEEEEEE-------------CSSEEEE--E----ETTEEEEEESSTT---CCBSSCCEE---EEEEEEEET
T ss_pred EEEEECCC-ceEEEEE-------------cCCEEEE--E----EcCEEEEEECCCC---ceeeEEecc---CCceEEEEc
Confidence 88776432 2222222 2211111 0 1223333333221 012233332 334455666
Q ss_pred CCEEEE--EECCCcEEEEECCCCe----------------eeeEee-CCCCeEEEEEeecCCCEEEEEEcCCc-EEEEec
Q 005646 365 NNYLLS--ASIDKTVRLWRVGNDH----------------CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGK-VRIWAV 424 (686)
Q Consensus 365 ~~~L~s--~s~Dg~V~iWd~~~~~----------------~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~-V~iwd~ 424 (686)
.+|+. |+.||+|++||+.++. ++..+. |...|++++|+| ++++|++|+.||+ |+|||+
T Consensus 148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp -TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEET
T ss_pred -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEEC
Confidence 64554 6899999999999875 255555 999999999999 9999999999998 999999
Q ss_pred CCCcEEEEec---cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeE---------------EeeccccCCC
Q 005646 425 LSCHVVDWVD---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI---------------CVHSKKKAPC 486 (686)
Q Consensus 425 ~~~~~~~~~~---~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~ 486 (686)
++++.+.... |...|++++|+|+|++|++++.|++|++||+..........+ ..........
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 9998886554 889999999999999999999999999999976532111100 0000011122
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
.....++|++ +++.+++++.||.+++|+..
T Consensus 306 ~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 306 VRGCKIAWIS-ESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp CCCCEEEESS-SSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEEEeC-CCCEEEEEeCCCeEEEEEEE
Confidence 3346789999 88999999999999999753
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=6.9e-23 Score=219.01 Aligned_cols=231 Identities=13% Similarity=0.195 Sum_probs=184.7
Q ss_pred ceeeecCCCcc-ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEE-eCCCcEEEEEeecCe
Q 005646 206 GERVRLNEEDA-MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-GDDGVVRLWQVVEDE 283 (686)
Q Consensus 206 ~~~~s~~~~~l-~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~vWd~~~~~ 283 (686)
...+++++..+ ++++.++.|++|+...... .+.+..|. .|.+++|+|++++|+.+ +.|+.|++||+.+++
T Consensus 36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~ 107 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (391)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eEEECCCCCEEEEECCCCCeEEEEECCCCeE-------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe
Confidence 45677888876 6777999999999865432 12344344 89999999999988655 467999999998876
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+.. +. +...+.+++|+
T Consensus 108 ~~~~--------------------------------------------------------------~~-~~~~~~~~~~s 124 (391)
T 1l0q_A 108 VAGT--------------------------------------------------------------VK-TGKSPLGLALS 124 (391)
T ss_dssp EEEE--------------------------------------------------------------EE-CSSSEEEEEEC
T ss_pred EEEE--------------------------------------------------------------Ee-CCCCcceEEEC
Confidence 3322 22 33467899999
Q ss_pred CCC-EE-EEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE-EEEEcCCcEEEEecCCCcEEEEeccCCcEE
Q 005646 364 KNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAVLSCHVVDWVDIRQIVT 440 (686)
Q Consensus 364 ~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~ 440 (686)
|++ +| ++++.|+.|++||+.+++++..+.....+.+++|+| +++++ ++++.|+.|++||+++++.+....+...+.
T Consensus 125 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 203 (391)
T 1l0q_A 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPS 203 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence 999 55 688889999999999999999998777889999999 88776 677889999999999999888888888999
Q ss_pred EEEEccCCCEEEEEe---cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE-EEEeCCCcEEEEeC
Q 005646 441 AVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRILQG 516 (686)
Q Consensus 441 ~v~~spdg~~l~~gs---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l-~~~s~D~~I~iwd~ 516 (686)
+++|+|+|+++++++ .++.|++||+.+++...... . ...+.+++|+| +++.+ ++++.|+.|++||.
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~--------~-~~~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--------V-GPDPAGIAVTP-DGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--------C-CSSEEEEEECT-TSSEEEEEETTTTEEEEEET
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe--------c-CCCccEEEEcc-CCCEEEEEcCCCCEEEEEEC
Confidence 999999999999988 68999999999876543211 1 13478999999 56655 66788999999997
Q ss_pred Cc
Q 005646 517 PN 518 (686)
Q Consensus 517 ~~ 518 (686)
.+
T Consensus 274 ~~ 275 (391)
T 1l0q_A 274 AT 275 (391)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=6.6e-23 Score=221.74 Aligned_cols=260 Identities=10% Similarity=0.043 Sum_probs=200.3
Q ss_pred eecCCC-ccceee----ccc----eEEEEEc--CCccccccccccCceecccCCceEEEEEee--------------CCC
Q 005646 209 VRLNEE-DAMFCS----KVQ----RVKVYHC--KKRSKELSALYKGQEIQAHDGSILTMKFSP--------------DGQ 263 (686)
Q Consensus 209 ~s~~~~-~l~~g~----~d~----~v~vw~~--~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------------dg~ 263 (686)
+...+. .+++|+ .+| .++|||. .+.... ....+.+|...+..+++++ .+.
T Consensus 70 w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~ 144 (415)
T 2hqs_A 70 WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-----AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT 144 (415)
T ss_dssp HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-----EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC
T ss_pred HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-----eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 334443 444665 346 8999998 554321 1245778888888888775 156
Q ss_pred EEEEEeCC------CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCC
Q 005646 264 YLASAGDD------GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPP 337 (686)
Q Consensus 264 ~Lasgs~D------g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (686)
.|+.++.+ +.|++||+...
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~g~------------------------------------------------------- 169 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYDGY------------------------------------------------------- 169 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSC-------------------------------------------------------
T ss_pred EEEEEEecCCCCccceEEEEcCCCC-------------------------------------------------------
Confidence 67666654 79999998642
Q ss_pred ccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCC---cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEE-E
Q 005646 338 KVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK---TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-S 412 (686)
Q Consensus 338 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg---~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~-s 412 (686)
....+.+|...|.+++|+|+| +|++++.++ .|++||+.++++.....|...+.+++|+| ++++|+ +
T Consensus 170 --------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp-dg~~la~~ 240 (415)
T 2hqs_A 170 --------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFA 240 (415)
T ss_dssp --------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEE
T ss_pred --------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcC-CCCEEEEE
Confidence 234556688999999999999 999999885 99999999998877666889999999999 898777 6
Q ss_pred EEcCCc--EEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec-CC--cEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 413 GSIDGK--VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 413 gs~Dg~--V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
++.|+. |++||+.+++...+..+...+.+++|+|||++|++++. ++ .|++||+.+++... ...+..
T Consensus 241 ~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~---------l~~~~~ 311 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR---------ITWEGS 311 (415)
T ss_dssp ECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE---------CCCSSS
T ss_pred EecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE---------EecCCC
Confidence 666655 99999999988877788889999999999999998876 44 67888988765321 122345
Q ss_pred CeEEEEEeCCCCCeEEEEeCC---CcEEEEeCCc-------------ceeEcCCCCEEEEEeCCC---cEEEEeCCCCC
Q 005646 488 RITGFQFLPQDSSKVMVSCAD---SQVRILQGPN-------------VIGKYKDGKHIVSAGEDS---NVYMWNCIGHE 547 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~s~D---~~I~iwd~~~-------------~~~~~~dg~~l~sgs~Dg---~V~iWd~~~~~ 547 (686)
.+..++|+| +++.|++++.+ ..|++||..+ .++|+|||++|++++.|+ .|++||+.++.
T Consensus 312 ~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 312 QNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 688999999 77888877764 5899999653 367899999999999887 79999987543
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=9.4e-22 Score=219.68 Aligned_cols=267 Identities=11% Similarity=0.112 Sum_probs=201.3
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEe--ecCe
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV--VEDE 283 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~--~~~~ 283 (686)
+..+++++..+++++.++.|.+||...... .+++..+.. +..++|+|||++|++++.|++|++||+ .+++
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~-------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKI-------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCE-------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceE-------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 345777788889999999999998765432 234442323 899999999999999999999999999 6655
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+. .+. +...+..++|+
T Consensus 214 ~~~--------------------------------------------------------------~i~-~g~~p~~va~s 230 (543)
T 1nir_A 214 KVA--------------------------------------------------------------EIK-IGIEARSVESS 230 (543)
T ss_dssp EEE--------------------------------------------------------------EEE-CCSEEEEEEEC
T ss_pred EEE--------------------------------------------------------------EEe-cCCCcceEEeC
Confidence 322 222 33467899999
Q ss_pred C----CC-EEEEEE-CCCcEEEEECCCCeeeeEeeC------------CCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 364 K----NN-YLLSAS-IDKTVRLWRVGNDHCLRVFPH------------SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 364 ~----~~-~L~s~s-~Dg~V~iWd~~~~~~~~~~~h------------~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
| +| +|++++ .+++|.+||..+++++..+.. ...+.++.++|.+..++++...+++|.+||+.
T Consensus 231 p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 231 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 9 98 888777 489999999999999888752 23789999999445566777788999999998
Q ss_pred CCcEE--EEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 426 SCHVV--DWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 426 ~~~~~--~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
+.+.+ ....+...+..++|+|+|+++++++ .+++|.+||+.++++..... .....|......+ ++|+.+..+
T Consensus 311 ~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~----~g~~ph~g~g~~~-~~p~~g~~~ 385 (543)
T 1nir_A 311 DIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD----VGKTPHPGRGANF-VHPKYGPVW 385 (543)
T ss_dssp TSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE----CSSSBCCTTCEEE-EETTTEEEE
T ss_pred CCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec----cCCCCCCCCCccc-CCCCCccEE
Confidence 76543 2455667788999999999877654 58999999999988754321 1123344434333 577446666
Q ss_pred EEEe-CCCcEEEEeCCc----------------------ceeEcCCCCEEEEEe-------CCCcEEEEeCCCCCC
Q 005646 503 MVSC-ADSQVRILQGPN----------------------VIGKYKDGKHIVSAG-------EDSNVYMWNCIGHEE 548 (686)
Q Consensus 503 ~~~s-~D~~I~iwd~~~----------------------~~~~~~dg~~l~sgs-------~Dg~V~iWd~~~~~~ 548 (686)
+++. .|++|.+||..+ .+.++|++++|++++ .+++|.|||+.+.+.
T Consensus 386 ~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 386 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred EeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 6665 689999998643 267889999999987 278999999999873
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=6.9e-21 Score=198.86 Aligned_cols=261 Identities=13% Similarity=0.213 Sum_probs=184.5
Q ss_pred ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC-CcEEEEEee--cCeeeeeeccCCC
Q 005646 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD-GVVRLWQVV--EDERLTEVDIPEI 293 (686)
Q Consensus 217 ~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g~I~vWd~~--~~~~~~~~~~~~~ 293 (686)
++++.++.|++|++.... .... .....|...+.+++|+|+|++|++++.+ +.|++|++. +++..
T Consensus 9 ~~~~~~~~v~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~-------- 75 (343)
T 1ri6_A 9 IASPESQQIHVWNLNHEG-ALTL----TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT-------- 75 (343)
T ss_dssp EEEGGGTEEEEEEECTTS-CEEE----EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE--------
T ss_pred EeCCCCCeEEEEEECCCC-cEEE----eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee--------
Confidence 444789999999985321 1111 1122477789999999999999999887 999999997 33311
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s 372 (686)
.+..+..+. .+..++|+|++ +|++++
T Consensus 76 ----------------------------------------------------~~~~~~~~~-~~~~~~~s~dg~~l~~~~ 102 (343)
T 1ri6_A 76 ----------------------------------------------------FAAESALPG-SLTHISTDHQGQFVFVGS 102 (343)
T ss_dssp ----------------------------------------------------EEEEEECSS-CCSEEEECTTSSEEEEEE
T ss_pred ----------------------------------------------------eccccccCC-CCcEEEEcCCCCEEEEEe
Confidence 112222233 77899999999 676665
Q ss_pred C-CCcEEEEECC---CCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCC-CcEEE-----Ee-ccCCcEE
Q 005646 373 I-DKTVRLWRVG---NDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLS-CHVVD-----WV-DIRQIVT 440 (686)
Q Consensus 373 ~-Dg~V~iWd~~---~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~-~~~~~-----~~-~~~~~V~ 440 (686)
. ++.|.+||+. ..+.+..+.....+.+++|+| +++++++++ .++.|++||+.+ +++.. .. .....+.
T Consensus 103 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (343)
T 1ri6_A 103 YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 181 (343)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred cCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcc
Confidence 4 8899999994 445556666666799999999 888888877 899999999987 65532 11 2345788
Q ss_pred EEEEccCCCEEEEEe-cCCcEEEEeCCC--CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE-EEeCCCcEEEEeC
Q 005646 441 AVCYRPDGQGGIVGS-MMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM-VSCADSQVRILQG 516 (686)
Q Consensus 441 ~v~~spdg~~l~~gs-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~-~~s~D~~I~iwd~ 516 (686)
.++|+|+|+++++++ .++.|.+|++.. +.+..................+.+++|+| +++.|+ +...++.|++|+.
T Consensus 182 ~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 182 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEEEE
Confidence 999999999776554 789999999954 43322221111111111234577899999 566655 5557999999986
Q ss_pred C------------------cceeEcCCCCEEEEEe-CCCcEEEEeCCC
Q 005646 517 P------------------NVIGKYKDGKHIVSAG-EDSNVYMWNCIG 545 (686)
Q Consensus 517 ~------------------~~~~~~~dg~~l~sgs-~Dg~V~iWd~~~ 545 (686)
. ..++++|+|++|++++ .|+.|.+|+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 261 SEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp CTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred cCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 5 1257888999998888 689999996653
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=1.5e-20 Score=203.23 Aligned_cols=222 Identities=10% Similarity=0.062 Sum_probs=175.7
Q ss_pred CCccceeecc------ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCC---cEEEEEeecCe
Q 005646 213 EEDAMFCSKV------QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG---VVRLWQVVEDE 283 (686)
Q Consensus 213 ~~~l~~g~~d------~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---~I~vWd~~~~~ 283 (686)
+..++.++.+ +.|++|+..... .+.+.+|...|.+++|+|||++||+++.|+ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 3445555443 799999986422 255778999999999999999999999885 99999998765
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
. ..+..|...+.+++|+
T Consensus 215 ~---------------------------------------------------------------~~l~~~~~~~~~~~~s 231 (415)
T 2hqs_A 215 V---------------------------------------------------------------RQVASFPRHNGAPAFS 231 (415)
T ss_dssp E---------------------------------------------------------------EEEECCSSCEEEEEEC
T ss_pred E---------------------------------------------------------------EEeecCCCcccCEEEc
Confidence 2 2234577789999999
Q ss_pred CCC-EEE-EEECCCc--EEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CC--cEEEEecCCCcEEEEeccC
Q 005646 364 KNN-YLL-SASIDKT--VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 364 ~~~-~L~-s~s~Dg~--V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~~ 436 (686)
|+| +|+ +++.|+. |++||+.++++.....|...+.+++|+| ++++|++++. ++ .|++||+.+++......+.
T Consensus 232 pdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~ 310 (415)
T 2hqs_A 232 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG 310 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC
Confidence 999 666 6666665 9999999988765556889999999999 9999988886 44 6888899988876666677
Q ss_pred CcEEEEEEccCCCEEEEEecC---CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC---c
Q 005646 437 QIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS---Q 510 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~---~ 510 (686)
..+..++|+|||++|++++.+ ..|++||+.+++... + ..+ ..+.+++|+| ++..|++++.++ .
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-----l----~~~-~~~~~~~~sp-dg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-----L----SST-FLDETPSLAP-NGTMVIYSSSQGMGSV 379 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-----C----CCS-SSCEEEEECT-TSSEEEEEEEETTEEE
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-----e----cCC-CCcCCeEEcC-CCCEEEEEEcCCCccE
Confidence 789999999999999988764 589999998876532 1 112 2689999999 788888888776 7
Q ss_pred EEEEeCC
Q 005646 511 VRILQGP 517 (686)
Q Consensus 511 I~iwd~~ 517 (686)
|++||..
T Consensus 380 l~~~d~~ 386 (415)
T 2hqs_A 380 LNLVSTD 386 (415)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 8888864
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=2.4e-20 Score=225.26 Aligned_cols=312 Identities=13% Similarity=0.079 Sum_probs=209.0
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC------CcEEEEEeecCe
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD------GVVRLWQVVEDE 283 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D------g~I~vWd~~~~~ 283 (686)
..+++.++.++. +.|.+|+...... +.+.+|...|.+++|||||++||+++.+ ..|++|++.+++
T Consensus 21 ~~S~~~iaf~~~-~~l~~~~~~gg~~--------~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~ 91 (1045)
T 1k32_A 21 DIHGDRIIFVCC-DDLWEHDLKSGST--------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 91 (1045)
T ss_dssp EEETTEEEEEET-TEEEEEETTTCCE--------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred EEeCCEEEEEEC-CcEEEEECCCCcE--------EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC
Confidence 334677777665 6899998865322 4567899999999999999999988653 479999998776
Q ss_pred eeeeeccCCCCC-------cceEEeecCCCCceeeeecc-c--cceeEEEeec----------cCCce------EEEeC-
Q 005646 284 RLTEVDIPEIDP-------SCIYFTVNHLSELKPLFMDK-E--KISILKSLRR----------TSESA------CVVFP- 336 (686)
Q Consensus 284 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~----------~~~~~------~~~~~- 336 (686)
...+..+.... ..+.|+++.. +....... . ....+..+.. ..... .+...
T Consensus 92 -~~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~ 168 (1045)
T 1k32_A 92 -IKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGR 168 (1045)
T ss_dssp -EEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEE
T ss_pred -eEEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEec
Confidence 34444333222 3444544442 11111100 0 1011111110 00000 00000
Q ss_pred ----------------Ccccc-ccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCC-CeeeeEeeCCCCeE
Q 005646 337 ----------------PKVFR-ILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFPHSNYVT 398 (686)
Q Consensus 337 ----------------~~~~~-~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~-~~~~~~~~h~~~V~ 398 (686)
.++|. ........+.+|...+.++.|+++.++++++.|++++||.+.. +.....+.+...+.
T Consensus 169 ~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~ 248 (1045)
T 1k32_A 169 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY 248 (1045)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC
T ss_pred cCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcc
Confidence 00000 0113345567899999999999886667788899999998764 34445555334567
Q ss_pred EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-----------cCCcEEEEEEc-cCCCEEEEEecCCcEEEEeCC
Q 005646 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-----------IRQIVTAVCYR-PDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-----------~~~~V~~v~~s-pdg~~l~~gs~dg~i~iwd~~ 466 (686)
.++|+| ++++|+.+. ++.|++||+...++..+.. +...+.+++|+ |||+.|++++ ++.+++|++.
T Consensus 249 ~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 249 PRHLNT-DGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEEE-SSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred eeeEcC-CCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 889999 999888874 8999999996555543222 23368899999 9999999887 8899999998
Q ss_pred CCeeeeeeeEEeeccccCCCC-CeEEEEEeCCCCCeEEEEeCCCcEE-EEeCC--------------cceeEcCCCCEEE
Q 005646 467 DNHLELDAEICVHSKKKAPCK-RITGFQFLPQDSSKVMVSCADSQVR-ILQGP--------------NVIGKYKDGKHIV 530 (686)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~-~I~~l~fsp~~~~~l~~~s~D~~I~-iwd~~--------------~~~~~~~dg~~l~ 530 (686)
++.... ...+.. .+..++|+ +++.+++++.+..+. +|+.. ..++++|||++|+
T Consensus 326 ~~~~~~---------~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la 394 (1045)
T 1k32_A 326 GTYVLK---------VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAV 394 (1045)
T ss_dssp SSBEEE---------CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEE
T ss_pred CCceEE---------ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEE
Confidence 765332 122334 68899999 677888888888888 88853 2467999999999
Q ss_pred EEeCCCcEEEEeCCCCC
Q 005646 531 SAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 531 sgs~Dg~V~iWd~~~~~ 547 (686)
+++.|+.|++||+.+++
T Consensus 395 ~~~~~~~v~~~d~~tg~ 411 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGK 411 (1045)
T ss_dssp EEETTSEEEEEETTTCC
T ss_pred EECCCCeEEEEECCCCc
Confidence 99999999999998865
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=2.3e-19 Score=186.90 Aligned_cols=260 Identities=9% Similarity=0.103 Sum_probs=186.3
Q ss_pred cCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeecCeeeeee
Q 005646 211 LNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 211 ~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~~~~~~~~ 288 (686)
.+++ .+++...++.|.+||....... ..+..+...+ .++|+|+|++|++++. ++.|.+||+.+++..
T Consensus 7 ~~~~~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--- 75 (331)
T 3u4y_A 7 TTSNFGIVVEQHLRRISFFSTDTLEIL-------NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--- 75 (331)
T ss_dssp CCCCEEEEEEGGGTEEEEEETTTCCEE-------EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE---
T ss_pred CCCCEEEEEecCCCeEEEEeCccccee-------eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee---
Confidence 3344 4677888999999998654321 2233455666 9999999997777666 899999999876520
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-E
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y 367 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~ 367 (686)
...+..+..+..+++|+|++ +
T Consensus 76 ----------------------------------------------------------~~~~~~~~~~~~~~~~s~dg~~ 97 (331)
T 3u4y_A 76 ----------------------------------------------------------VVAIQEGQSSMADVDITPDDQF 97 (331)
T ss_dssp ----------------------------------------------------------EEEEEECSSCCCCEEECTTSSE
T ss_pred ----------------------------------------------------------EEecccCCCCccceEECCCCCE
Confidence 22233455555559999999 7
Q ss_pred EEEEECCC---cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCE-EEEEEcCCc-EEEEecCCCcEE-----EEeccCC
Q 005646 368 LLSASIDK---TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY-FISGSIDGK-VRIWAVLSCHVV-----DWVDIRQ 437 (686)
Q Consensus 368 L~s~s~Dg---~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~-l~sgs~Dg~-V~iwd~~~~~~~-----~~~~~~~ 437 (686)
|+++..++ .|.+||+.+++.+..+.+...+.+++|+| ++++ +++...++. |++|++.....+ .......
T Consensus 98 l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 176 (331)
T 3u4y_A 98 AVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGT 176 (331)
T ss_dssp EEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSS
T ss_pred EEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCC
Confidence 77544442 89999999999999888777889999999 8774 455566688 999998754322 2234456
Q ss_pred cEEEEEEccCCCEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE-eCCCcEEEEe
Q 005646 438 IVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQ 515 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~-s~D~~I~iwd 515 (686)
.+..++|+|+|++++++ ..++.|++||+.+++...... .+. ....+.+++|+| ++++++++ ..++.|.+||
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~-~~~-----~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLN-AVG-----TNNLPGTIVVSR-DGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE-EEE-----CSSCCCCEEECT-TSSEEEEECSSEEEEEEEE
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceee-ecc-----CCCCCceEEECC-CCCEEEEEEcCCCEEEEEE
Confidence 68999999999966555 468899999998776511010 111 125578899999 67766555 4578899999
Q ss_pred CCcc------------------------eeEcCCCCEEEEEeC-CCcEEEEeCCCCC
Q 005646 516 GPNV------------------------IGKYKDGKHIVSAGE-DSNVYMWNCIGHE 547 (686)
Q Consensus 516 ~~~~------------------------~~~~~dg~~l~sgs~-Dg~V~iWd~~~~~ 547 (686)
..+. ++++|||++|++++. ++.|+|||+....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 6531 378899998876654 5699999998743
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=1.3e-19 Score=218.71 Aligned_cols=306 Identities=10% Similarity=0.042 Sum_probs=210.4
Q ss_pred ceeeecCCCccceeecc------ceEEEEEcCCccccccccccCceecccCCce-------EEEEEeeCCCEEEEEeCC-
Q 005646 206 GERVRLNEEDAMFCSKV------QRVKVYHCKKRSKELSALYKGQEIQAHDGSI-------LTMKFSPDGQYLASAGDD- 271 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d------~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I-------~~l~fspdg~~Lasgs~D- 271 (686)
..+|+++|+++++++.+ ..|++|+..... .+.+..|...+ ..++|+|||+++++++.+
T Consensus 57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--------~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~ 128 (1045)
T 1k32_A 57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--------IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 128 (1045)
T ss_dssp EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--------EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC--------eEEcccCCCcccccccccccccCCCCCEEEEEECCcC
Confidence 35788999999987654 478888876432 24567788888 999999999988888755
Q ss_pred -----CcEEEEEeecCeeeeeeccCCCCCcceEEee---------------------------------------cCCCC
Q 005646 272 -----GVVRLWQVVEDERLTEVDIPEIDPSCIYFTV---------------------------------------NHLSE 307 (686)
Q Consensus 272 -----g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~ 307 (686)
..|.+|++.+++....... ....+.|++ .+...
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~ 205 (1045)
T 1k32_A 129 PFSSMTCLYRVENDGINFVPLNLG---PATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTH 205 (1045)
T ss_dssp SSTTCCEEEEEEGGGTEEEECCSC---SCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSC
T ss_pred CCcccceEEEEECCCCCeEEecCC---CcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCc
Confidence 3577778777664322211 111122221 00001
Q ss_pred ceeeeeccccceeEEEeeccCCceEEEeCCccccc--cCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCC
Q 005646 308 LKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI--LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN 384 (686)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~ 384 (686)
+....+.++ ..+......... .+|.+ .......+..|. .+..++|+|+| .|+.+ .++.|.+||+..
T Consensus 206 v~~~~~s~d--~l~~~~~~dg~~-------~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 206 VSSPVIVGH--RIYFITDIDGFG-------QIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp CEEEEEETT--EEEEEECTTSSC-------EEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred ccceEEeCC--EEEEEEeccCce-------EEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 111111111 000000000011 12221 133455555565 46778999999 67776 489999999954
Q ss_pred CeeeeEee------------CCCCeEEEEEe-ecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC-cEEEEEEccCCCE
Q 005646 385 DHCLRVFP------------HSNYVTCVHFN-PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQG 450 (686)
Q Consensus 385 ~~~~~~~~------------h~~~V~~v~fs-p~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~-~V~~v~~spdg~~ 450 (686)
.+. ..+. |...+.+++|+ | ++++|++++ ++.|++|++.++.......+.. .+..++|+ ||+.
T Consensus 275 ~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 275 EKI-EKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVA 350 (1045)
T ss_dssp CCE-EECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEE
T ss_pred eEe-eeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCe
Confidence 433 3333 23479999999 9 999888888 8899999999988777767777 89999999 9999
Q ss_pred EEEEecCCcEE-EEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----------
Q 005646 451 GIVGSMMGDCR-FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----------- 518 (686)
Q Consensus 451 l~~gs~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~----------- 518 (686)
|+.++.++.+. +||+.++.... ...+...+..++|+| +++.|++++.++.|++||..+
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~~---------l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~ 420 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAEK---------FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSRE 420 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEEE---------CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEECCCceEEEEECCCCCceE---------ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCC
Confidence 99998888888 99998765321 114557799999999 889999999999999999643
Q ss_pred ----ceeEcCCCCEEEEEeCCC----------cEEEEeCCCCC
Q 005646 519 ----VIGKYKDGKHIVSAGEDS----------NVYMWNCIGHE 547 (686)
Q Consensus 519 ----~~~~~~dg~~l~sgs~Dg----------~V~iWd~~~~~ 547 (686)
.++|+|||++|++++.++ .|++||+.+++
T Consensus 421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 367899999999988754 89999998764
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.85 E-value=9.4e-20 Score=203.47 Aligned_cols=275 Identities=12% Similarity=0.069 Sum_probs=202.0
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEee----CCCEEEEEeC-CCcEEEEEe
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP----DGQYLASAGD-DGVVRLWQV 279 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~Lasgs~-Dg~I~vWd~ 279 (686)
....|+++++++++++.++.|.+||....... ...++. +...+..++|+| ||++|++++. +++|.|||.
T Consensus 182 ~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 182 HISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred ceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec
Confidence 34678899999999999999999998311111 123344 345689999999 9999999985 899999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC-CCee
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS-GEIL 358 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~ 358 (686)
.+++.+..+........ .. .-|. ..+.
T Consensus 256 ~t~~~~~~i~~~g~~~~--------------------------------------------------~~--~~~~~~~v~ 283 (543)
T 1nir_A 256 ETLEPKQIVSTRGMTVD--------------------------------------------------TQ--TYHPEPRVA 283 (543)
T ss_dssp TTCCEEEEEECCEECSS--------------------------------------------------SC--CEESCCCEE
T ss_pred cccccceeecccCcccC--------------------------------------------------cc--ccccCCceE
Confidence 88876665542210000 00 0132 3788
Q ss_pred EEEeeCCC--EEEEEECCCcEEEEECCCCeeee--EeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCcEEEEe
Q 005646 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 359 ~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~--~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~~~~~~ 433 (686)
.+.++|++ ++++...+++|.+||+.+.+.+. .+.+...+..++|+| ++++|++++ .+++|.+||+.+++++...
T Consensus 284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i 362 (543)
T 1nir_A 284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALV 362 (543)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEee
Confidence 99999987 77788889999999998876555 556778899999999 999877665 5899999999999988655
Q ss_pred c-----cCCcEEEEEEccC-CCEEEEEe-cCCcEEEEeCCC-------CeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 434 D-----IRQIVTAVCYRPD-GQGGIVGS-MMGDCRFYNVSD-------NHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 434 ~-----~~~~V~~v~~spd-g~~l~~gs-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
. |......+ ++|+ |..++++. .|++|.+||+.+ .++.. . ...|...+..+.|+| ++
T Consensus 363 ~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~--~------l~~~g~~~~~v~~~p-dg 432 (543)
T 1nir_A 363 DVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA--E------LQGQGGGSLFIKTHP-KS 432 (543)
T ss_dssp ECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE--E------EECSCSCCCCEECCT-TC
T ss_pred ccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEE--E------EEcCCCCceEEEcCC-CC
Confidence 4 33333333 5787 65666665 589999999987 33322 1 223446678899999 88
Q ss_pred CeEEEEe-------CCCcEEEEeCCcc------------------------eeEcCCCCEEEEEe-----CCCcEEEEeC
Q 005646 500 SKVMVSC-------ADSQVRILQGPNV------------------------IGKYKDGKHIVSAG-----EDSNVYMWNC 543 (686)
Q Consensus 500 ~~l~~~s-------~D~~I~iwd~~~~------------------------~~~~~dg~~l~sgs-----~Dg~V~iWd~ 543 (686)
+.|.+++ .+++|.+||..+. +.|+|+|++|+.+. .|+.|.|||.
T Consensus 433 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 433 SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred CcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 9999887 2779999996531 34678999999762 4899999999
Q ss_pred CCCCC
Q 005646 544 IGHEE 548 (686)
Q Consensus 544 ~~~~~ 548 (686)
.+++.
T Consensus 513 ~t~~~ 517 (543)
T 1nir_A 513 KTLKL 517 (543)
T ss_dssp TTTEE
T ss_pred CCceE
Confidence 99873
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=6.4e-20 Score=213.35 Aligned_cols=264 Identities=14% Similarity=0.108 Sum_probs=193.6
Q ss_pred ceeeecCCCccceeec-cc-----eEEEEEcCCccccccccccCceecccC------------------------CceEE
Q 005646 206 GERVRLNEEDAMFCSK-VQ-----RVKVYHCKKRSKELSALYKGQEIQAHD------------------------GSILT 255 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~-d~-----~v~vw~~~~~~~~~~~~~~~~~l~~H~------------------------~~I~~ 255 (686)
...|+++|+++++++. ++ .|++|+....... +.+..|. ..|.+
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR-------LLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE-------EEECGGGTC--------------------CCEESCC
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee-------EccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 4678899999999988 87 8999998764321 1111121 34889
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEe
Q 005646 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (686)
Q Consensus 256 l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (686)
++|||||++|++++. +.|++||+.++..
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~--------------------------------------------------- 141 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGK--------------------------------------------------- 141 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCST---------------------------------------------------
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCc---------------------------------------------------
Confidence 999999999999987 8999999987610
Q ss_pred CCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCC----------------e
Q 005646 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY----------------V 397 (686)
Q Consensus 336 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~----------------V 397 (686)
..+..+..|...+..++|+|+| +|+.++ ++.|++||+.+++...... +... +
T Consensus 142 ---------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~ 211 (741)
T 2ecf_A 142 ---------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRH 211 (741)
T ss_dssp ---------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCC
T ss_pred ---------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccc
Confidence 0012234567789999999999 788777 5699999999988776554 3222 4
Q ss_pred EEEEEeecCCCEEEEEEcCC---------------------------------cEEEEecCC-CcEEEEe---ccCCcEE
Q 005646 398 TCVHFNPVDDNYFISGSIDG---------------------------------KVRIWAVLS-CHVVDWV---DIRQIVT 440 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sgs~Dg---------------------------------~V~iwd~~~-~~~~~~~---~~~~~V~ 440 (686)
.+++|+| |+++|++++.|+ .|++||+.+ ++..... .+...+.
T Consensus 212 ~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 290 (741)
T 2ecf_A 212 TGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLA 290 (741)
T ss_dssp CSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEE
T ss_pred cceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEE
Confidence 7899999 999999998776 899999998 8765443 3667899
Q ss_pred EEEEccCCCEEEEEec-----CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 441 AVCYRPDGQGGIVGSM-----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
.++| |||++|++++. +..|++||+.+++....... ........+..++|+| +++++++++.|+.++||.
T Consensus 291 ~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~ 364 (741)
T 2ecf_A 291 RVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE----TSPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYR 364 (741)
T ss_dssp EEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE----ECSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEE
T ss_pred EEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc----CCCCcCCcCCceEECC-CCeEEEEecCCCccEEEE
Confidence 9999 99999998764 56799999998875432211 1111111456889999 667888888999777775
Q ss_pred CC--c-------------ce-eEcCCCCEEEE-EeCCC--cEEEEeCCC
Q 005646 516 GP--N-------------VI-GKYKDGKHIVS-AGEDS--NVYMWNCIG 545 (686)
Q Consensus 516 ~~--~-------------~~-~~~~dg~~l~s-gs~Dg--~V~iWd~~~ 545 (686)
.. . .+ .++|||++|+. ++.|+ .++||++..
T Consensus 365 ~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 365 IDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 32 0 12 58999997765 55555 899999864
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.1e-19 Score=185.00 Aligned_cols=236 Identities=14% Similarity=0.102 Sum_probs=172.0
Q ss_pred eeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeec-CeeeeeeccCCCCCcc
Q 005646 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE-DERLTEVDIPEIDPSC 297 (686)
Q Consensus 219 g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~-~~~~~~~~~~~~~~~~ 297 (686)
++.++.|++|+...... ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++...
T Consensus 18 ~~~~~~i~~~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~----------- 77 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKM--------RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK----------- 77 (297)
T ss_dssp CCCCEEEEEEETTTTEE--------EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-----------
T ss_pred CCcceeEEEEeCCCCce--------eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-----------
Confidence 56789999999865432 23556899999999999999999987 78999999987 54211
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC-CCCeeEEEeeCCC-EEEEEE--C
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH-SGEILDLSWSKNN-YLLSAS--I 373 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~s~~~-~L~s~s--~ 373 (686)
.+.+| ...|.+++|+|++ +|++++ .
T Consensus 78 ---------------------------------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 106 (297)
T 2ojh_A 78 ---------------------------------------------------VDTGFATICNNDHGISPDGALYAISDKVE 106 (297)
T ss_dssp ---------------------------------------------------CCCTTCCCBCSCCEECTTSSEEEEEECTT
T ss_pred ---------------------------------------------------eccccccccccceEECCCCCEEEEEEeCC
Confidence 11223 4678899999999 888888 3
Q ss_pred CCcEEEEEC--CCCeeeeEeeCCCCeEEEEEeecCCCEEE-EEEcCCcEEEEec--CCCcEEEEeccCCcEEEEEEccCC
Q 005646 374 DKTVRLWRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAV--LSCHVVDWVDIRQIVTAVCYRPDG 448 (686)
Q Consensus 374 Dg~V~iWd~--~~~~~~~~~~h~~~V~~v~fsp~~~~~l~-sgs~Dg~V~iwd~--~~~~~~~~~~~~~~V~~v~~spdg 448 (686)
++.++||.+ .+++ ...+.+...+.+++|+| ++++|+ +++.++.++||++ .++.......+...+.+++|+|+|
T Consensus 107 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 184 (297)
T 2ojh_A 107 FGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG 184 (297)
T ss_dssp TSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS
T ss_pred CCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCC
Confidence 455566554 4444 44455555699999999 888776 7888999999985 456666677778889999999999
Q ss_pred CEEEEEe-cCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC-----------CcEEEEe
Q 005646 449 QGGIVGS-MMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----------SQVRILQ 515 (686)
Q Consensus 449 ~~l~~gs-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D-----------~~I~iwd 515 (686)
+.|++++ .++.+++|++.. ..... ....+...+..+.|+| +++.|++++.+ +.|.+||
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVE--------RITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEE--------ECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred CEEEEEecCCCCccEEEECCCCCCcE--------EEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 9888766 589999998752 22111 1222445688999999 67777777655 5688887
Q ss_pred CCc-----------------ceeEcCCCCEEEEEeCCC
Q 005646 516 GPN-----------------VIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 516 ~~~-----------------~~~~~~dg~~l~sgs~Dg 536 (686)
..+ .++|+|+|++|++++.|.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 256 MDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 542 245677888888776553
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=6.8e-20 Score=190.77 Aligned_cols=257 Identities=12% Similarity=0.101 Sum_probs=189.7
Q ss_pred CccceeeccceEEEEEcCCccccccccccCceec-ccCC-ceEEEEEeeCCCEE-EEEeCCCcEEEEEeecCeeeeeecc
Q 005646 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDG-SILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 214 ~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~-~I~~l~fspdg~~L-asgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
+.+++++.++.|.+||...... . ..+. ++.. .+..++|+|+|++| ++++.++.|.+||+.+++.+..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-~------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-D------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-E------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcE-E------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 3678889999999999865322 1 1222 2222 47889999999876 4556678999999988775443321
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~ 369 (686)
... ..|...+..++|+|++ +|+
T Consensus 75 ~~~---------------------------------------------------------~~~~~~~~~~~~s~dg~~l~ 97 (337)
T 1pby_B 75 STP---------------------------------------------------------EERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp CBT---------------------------------------------------------TEEEECTTCEEECTTSSEEE
T ss_pred CCc---------------------------------------------------------ccccccccceEECCCCCEEE
Confidence 100 0022356789999999 787
Q ss_pred EEE------------CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCC
Q 005646 370 SAS------------IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (686)
Q Consensus 370 s~s------------~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~ 437 (686)
+++ .++.|.+||+.+++.+..+.....+.+++|+| ++++|+++ ++.|++||+.+++.+.......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred EEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence 776 67999999999999988888777789999999 88888777 7899999999998876554433
Q ss_pred cEEEEEEccCCCEEEEEecCC------------------------cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 438 IVTAVCYRPDGQGGIVGSMMG------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
....+.|+|+|+.+++.+..+ .|.+||+.+++.. ... .. .+...+.+++
T Consensus 175 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~--~~----~~~~~~~~~~ 247 (337)
T 1pby_B 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE--VR----IMDVFYFSTA 247 (337)
T ss_dssp TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE--EE----ECSSCEEEEE
T ss_pred cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee--cC----CCCCceeeEE
Confidence 112347899998776654332 4689999987764 221 11 2335688999
Q ss_pred EeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 494 FLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
|+| +++.++++ ++.|.+||..+ .++++|+|++|++++.|+.|++||+.+++
T Consensus 248 ~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 248 VNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ECC-CCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 999 77777777 79999999653 36788999999999999999999998875
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=8.2e-20 Score=212.42 Aligned_cols=247 Identities=11% Similarity=0.111 Sum_probs=176.3
Q ss_pred CCceEEEEEeeCCCEEEEEeC-CC-----cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 250 DGSILTMKFSPDGQYLASAGD-DG-----VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~-Dg-----~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
...|.+++|+|||++|++++. |+ .|++||+.+++....+......+..-.+ ...
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-----------~~~--------- 95 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETL-----------SDE--------- 95 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccc-----------cch---------
Confidence 457999999999999999998 88 9999999988765444322111000000 000
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC---eeeeEeeCCCCeEE
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND---HCLRVFPHSNYVTC 399 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~---~~~~~~~h~~~V~~ 399 (686)
.+.. .....+. ....|.+++|+|+| +|++++. +.|++||+.++ .......|...+.+
T Consensus 96 -------------~~~~----~~~~~~~-~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~ 156 (741)
T 2ecf_A 96 -------------EKAR----RERQRIA-AMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATD 156 (741)
T ss_dssp -----------------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEE
T ss_pred -------------hhhh----hhhhhhc-cccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCccccc
Confidence 0000 0000011 12357899999999 8888876 99999999988 55555558889999
Q ss_pred EEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc-----------------EEEEEEccCCCEEEEEecCC----
Q 005646 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI-----------------VTAVCYRPDGQGGIVGSMMG---- 458 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~-----------------V~~v~~spdg~~l~~gs~dg---- 458 (686)
++|+| ++++|+.++ ++.|++||+.+++.......... +..++|+|||++|++++.|+
T Consensus 157 ~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~ 234 (741)
T 2ecf_A 157 AKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP 234 (741)
T ss_dssp EEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC
T ss_pred ccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc
Confidence 99999 999999988 56999999999887655433221 47799999999999988766
Q ss_pred -----------------------------cEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC-
Q 005646 459 -----------------------------DCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA- 507 (686)
Q Consensus 459 -----------------------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~- 507 (686)
.|++||+.+ ++..... . ...+...+..++| | +++.|++++.
T Consensus 235 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~---~---~~~~~~~~~~~~~-p-Dg~~l~~~~~~ 306 (741)
T 2ecf_A 235 VQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWID---L---GKEQDIYLARVNW-R-DPQHLSFQRQS 306 (741)
T ss_dssp EEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEEC---C---CSCSSEEEEEEEE-E-ETTEEEEEEEE
T ss_pred eEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEec---C---CCCcceEEEEEEe-C-CCCEEEEEEec
Confidence 788999987 6543211 0 1135567899999 9 7787776653
Q ss_pred ----CCcEEEEeCCc-------------------ceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 508 ----DSQVRILQGPN-------------------VIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 508 ----D~~I~iwd~~~-------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+..|++||..+ .++|+|||+++++++.||.++||.++.
T Consensus 307 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 307 RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence 56788998532 467899999999999999888888763
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.2e-18 Score=183.01 Aligned_cols=257 Identities=11% Similarity=0.125 Sum_probs=177.4
Q ss_pred ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC---CCcEEEEEeecCeeeeeeccCCCCCcc
Q 005646 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSC 297 (686)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~vWd~~~~~~~~~~~~~~~~~~~ 297 (686)
.++.|.+|.++.....+..+ ....+...+..++|+|||+ |++++. ++.|++|++.++...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------ 76 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------ 76 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred CCCCEEEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence 45678899887644333221 2234567788899999999 555544 689999999766521
Q ss_pred eEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE-CCC
Q 005646 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-IDK 375 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s-~Dg 375 (686)
.+..+..+...+..++|+|++ +|++++ .++
T Consensus 77 ------------------------------------------------~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 77 ------------------------------------------------KLNTVVAPGTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp ------------------------------------------------EEEEEEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred ------------------------------------------------EeeeeecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 122333466778899999999 788877 789
Q ss_pred cEEEEECCC-C--eeeeEeeCC----------CCeEEEEEeecCCCEEEEEEcCCcEEEEecC-CCcEEEE----eccCC
Q 005646 376 TVRLWRVGN-D--HCLRVFPHS----------NYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDW----VDIRQ 437 (686)
Q Consensus 376 ~V~iWd~~~-~--~~~~~~~h~----------~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~-~~~~~~~----~~~~~ 437 (686)
+|.+|++.. + +.+..+.+. ..+.+++|+| +++++++...++.|++|++. ++++... .....
T Consensus 109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF 187 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence 999999963 2 333334332 2488999999 88877777778999999998 5554322 12234
Q ss_pred cEEEEEEccCCCEEEE-EecCCcEEEEeCCC--CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE-EEEeCCCcEEE
Q 005646 438 IVTAVCYRPDGQGGIV-GSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRI 513 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~-gs~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l-~~~s~D~~I~i 513 (686)
.+..++|+|||+++++ +..++.|++|++.. +++.....+............+..++|+| ++++| ++...++.|.+
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEE
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEE
Confidence 6788999999996666 56688999999874 44432222211111111124588999999 67766 55667899999
Q ss_pred EeCC------------------cceeEcCCCCEEEEEeCC-CcEEEEeCC
Q 005646 514 LQGP------------------NVIGKYKDGKHIVSAGED-SNVYMWNCI 544 (686)
Q Consensus 514 wd~~------------------~~~~~~~dg~~l~sgs~D-g~V~iWd~~ 544 (686)
|+.. ..++++|||++|++++.+ +.|.+|+++
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9853 236788999999888765 899999654
No 140
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=3.8e-19 Score=193.12 Aligned_cols=211 Identities=12% Similarity=0.050 Sum_probs=151.9
Q ss_pred CcceeeecCCCccceeeccceEEEEEcCCcccc------cccc--ccCceecccCCceEEEEEeeCCCEEE----EEeCC
Q 005646 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKE------LSAL--YKGQEIQAHDGSILTMKFSPDGQYLA----SAGDD 271 (686)
Q Consensus 204 ~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~------~~~~--~~~~~l~~H~~~I~~l~fspdg~~La----sgs~D 271 (686)
....+++.++..+++++.++ ++||+....... .... ........|.+.|++++|+|+|++|| +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 45567788888888888887 899875422110 0000 01111224677899999999999999 88899
Q ss_pred CcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec
Q 005646 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (686)
Q Consensus 272 g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (686)
++|+|||+.++.... ...... -..+..+.
T Consensus 118 ~~v~iwd~~~~~~~~-----~~~~~~----------------------------------------------~~~~~~~~ 146 (434)
T 2oit_A 118 SIIAFFDVRTFSNEA-----KQQKRP----------------------------------------------FAYHKLLK 146 (434)
T ss_dssp EEEEEEEHHHHHCTT-----CSSCCC----------------------------------------------SEEEECCC
T ss_pred ceEEEEEccccccCC-----cCCcce----------------------------------------------eeeeeccC
Confidence 999999997641000 000000 00134456
Q ss_pred cCCCCeeEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 352 GHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 352 ~h~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
+|...|.+++|+|+ + +|++++.|++|++||++++..+.... |...|++++|+| ++++|++|+.||+|++||++ ++
T Consensus 147 ~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~ 224 (434)
T 2oit_A 147 DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQ 224 (434)
T ss_dssp SGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CC
T ss_pred CCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Cc
Confidence 79999999999998 5 99999999999999999987665444 889999999999 89999999999999999998 44
Q ss_pred EEE-Eecc-------CCcEEEEEEccCCCEEEEE-ecCCc------EEEEeCCCC
Q 005646 429 VVD-WVDI-------RQIVTAVCYRPDGQGGIVG-SMMGD------CRFYNVSDN 468 (686)
Q Consensus 429 ~~~-~~~~-------~~~V~~v~~spdg~~l~~g-s~dg~------i~iwd~~~~ 468 (686)
... ...+ ...|.+++|++++.++++. +.+|. +++|++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 225 EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 332 2222 2379999999998877553 34433 899999765
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=3.4e-18 Score=179.37 Aligned_cols=230 Identities=9% Similarity=0.050 Sum_probs=176.9
Q ss_pred cCCceEEEEEeeCCCEEEEEeC-------CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 249 HDGSILTMKFSPDGQYLASAGD-------DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~-------Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 86 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-------------------------------- 86 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------------------
Confidence 3456889999999999988874 5689999998876433322
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE-EEECCCcEEEEECCCCeeeeEeeC-CC---
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFPH-SN--- 395 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~~~~~~h-~~--- 395 (686)
....+..++|+|++ +++ +...++.|.+||+.+++.+..+.. ..
T Consensus 87 -------------------------------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 135 (353)
T 3vgz_A 87 -------------------------------NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT 135 (353)
T ss_dssp -------------------------------ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC
T ss_pred -------------------------------cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc
Confidence 12346778999998 454 555679999999999998888773 22
Q ss_pred ------CeEEEEEeecCCCEEEEEE--cCCcEEEEecCCCcEEEEec-cCCcEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 396 ------YVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 396 ------~V~~v~fsp~~~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~-~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
.+.+++|+| +++++++++ .++.|.+||+.+++.+.... +...+..++|+|+|+++++++.++.|.+||+.
T Consensus 136 ~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~ 214 (353)
T 3vgz_A 136 EEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTA 214 (353)
T ss_dssp SSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT
T ss_pred cccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECC
Confidence 278999999 888777776 47899999999999887766 55668899999999999999999999999999
Q ss_pred CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEeCCc-------------ceeEcCCCCEEEEE
Q 005646 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPN-------------VIGKYKDGKHIVSA 532 (686)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D~~I~iwd~~~-------------~~~~~~dg~~l~sg 532 (686)
+++....... ....+...+.+++|+| +++.+++++ .++.|.+||..+ .++++|+|++|+.+
T Consensus 215 ~~~~~~~~~~----~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 215 DNKILSRKKL----LDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVT 289 (353)
T ss_dssp TTEEEEEEEC----CCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEE
T ss_pred CCeEEEEEEc----CCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEE
Confidence 8876543221 1222445688999999 566555555 559999999753 36788999976665
Q ss_pred e-CCCcEEEEeCCCCC
Q 005646 533 G-EDSNVYMWNCIGHE 547 (686)
Q Consensus 533 s-~Dg~V~iWd~~~~~ 547 (686)
+ .++.|.+||+.+++
T Consensus 290 ~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 290 HRQAGKVSVIDAKSYK 305 (353)
T ss_dssp ETTTTEEEEEETTTTE
T ss_pred ECCCCeEEEEECCCCe
Confidence 5 78999999998765
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=3.5e-19 Score=206.38 Aligned_cols=263 Identities=10% Similarity=0.114 Sum_probs=188.9
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCC---ceEEEEEeeCCCEEEEEeCC---------Cc
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG---SILTMKFSPDGQYLASAGDD---------GV 273 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~D---------g~ 273 (686)
...|+++++++++ +.++.|++|+...... .+.+.+|.. .|.+++|||||++|++++.+ +.
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTS-------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcE-------EEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3578888887666 7899999998765432 123444554 49999999999999999875 77
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
|++||+.+++. ..+ ....+|
T Consensus 93 i~~~d~~~~~~-~~l-----------------------------------------------------------~~~~~~ 112 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSL-----------------------------------------------------------DPPEVS 112 (723)
T ss_dssp EEEEESSSCCC-EEC-----------------------------------------------------------CCTTCC
T ss_pred EEEEECCCCce-Eec-----------------------------------------------------------cCCccc
Confidence 88999987752 111 111245
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCC------------------eEEEEEeecCCCEEEEE
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY------------------VTCVHFNPVDDNYFISG 413 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~------------------V~~v~fsp~~~~~l~sg 413 (686)
...+..++|||+| .|+.++. +.|++||+.+++...... +... +.+++|+| |+++|+++
T Consensus 113 ~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~ 190 (723)
T 1xfd_A 113 NAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYA 190 (723)
T ss_dssp SCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEE
T ss_pred cccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEE
Confidence 5668899999999 8888876 799999999988776655 3333 37899999 99999998
Q ss_pred EcCC----------------------------------cEEEEecCCCcE-EEEecc------CCcEEEEEEccCCCEEE
Q 005646 414 SIDG----------------------------------KVRIWAVLSCHV-VDWVDI------RQIVTAVCYRPDGQGGI 452 (686)
Q Consensus 414 s~Dg----------------------------------~V~iwd~~~~~~-~~~~~~------~~~V~~v~~spdg~~l~ 452 (686)
+.|+ .|++||+.+++. ..+..+ ...+..++|+|||++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~ 270 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV 270 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence 8653 799999998875 333322 56789999999999887
Q ss_pred EEec----CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe----EEEEEeCCCCCeEEE--EeCCC------cEEEEe-
Q 005646 453 VGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI----TGFQFLPQDSSKVMV--SCADS------QVRILQ- 515 (686)
Q Consensus 453 ~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I----~~l~fsp~~~~~l~~--~s~D~------~I~iwd- 515 (686)
+... +..|++||+.+++....... .+...+ ..++|+| +++.|+. ...++ .|.+||
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~-------~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~ 342 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHED-------ESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSS 342 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEE-------ECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEe-------ccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEec
Confidence 7654 35799999988765432111 011222 3789999 5665554 44666 577787
Q ss_pred CC--c----------------ceeEcCCCCEEEEEeCC---CcEEEEeCCCC
Q 005646 516 GP--N----------------VIGKYKDGKHIVSAGED---SNVYMWNCIGH 546 (686)
Q Consensus 516 ~~--~----------------~~~~~~dg~~l~sgs~D---g~V~iWd~~~~ 546 (686)
.. . .++|+|||++|+..+.+ +.++||+++..
T Consensus 343 ~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 343 QPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred cCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 11 0 14689999999876655 78999998754
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.81 E-value=1.2e-17 Score=175.14 Aligned_cols=258 Identities=9% Similarity=0.054 Sum_probs=185.3
Q ss_pred ceeeecCCCccceeec-------cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEE-EeCCCcEEEE
Q 005646 206 GERVRLNEEDAMFCSK-------VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLAS-AGDDGVVRLW 277 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~-------d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~I~vW 277 (686)
...++++++.+++++. ++.|.+||...... ...+. +...+..++|+|+|++|+. ...++.|.+|
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-------~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-------TQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-------EEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-------EEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 3567788887777663 67899998765432 11222 2345788999999996555 4557999999
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
|+.+++.+..+....... + -......+
T Consensus 117 d~~~~~~~~~~~~~~~~~--------------------------------------------------~---~~~~~~~~ 143 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKR--------------------------------------------------T---EEVRPLQP 143 (353)
T ss_dssp ETTTCCEEEEEESCCCCC--------------------------------------------------C---SSCCCCEE
T ss_pred eCCCCeeEEEEecCCCcc--------------------------------------------------c---cccCCCCC
Confidence 998887655443221100 0 00011236
Q ss_pred eEEEeeCCC-EEEEEE--CCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe
Q 005646 358 LDLSWSKNN-YLLSAS--IDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s--~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~ 433 (686)
.+++|+|++ +|++++ .++.|.+||+.+++.+..+. +...+.+++|+| +++++++++.++.|.+||+.+++.+...
T Consensus 144 ~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 144 RELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRK 222 (353)
T ss_dssp EEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred ceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence 789999998 666655 48899999999999999888 777799999999 9999999999999999999999887554
Q ss_pred c-----cCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE-EEe
Q 005646 434 D-----IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM-VSC 506 (686)
Q Consensus 434 ~-----~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~-~~s 506 (686)
. +...+..++|+|+|+++++++. ++.|.+||+.+++...... . ....++.|+| +++.++ +..
T Consensus 223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~--------~~~~~~~~s~-dg~~l~v~~~ 291 (353)
T 3vgz_A 223 KLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA--A--------PESLAVLFNP-ARNEAYVTHR 291 (353)
T ss_dssp ECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE--C--------SSCCCEEEET-TTTEEEEEET
T ss_pred EcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE--c--------CCCceEEECC-CCCEEEEEEC
Confidence 4 3445788999999998777665 4899999998877643222 1 1125699999 566554 445
Q ss_pred CCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCC
Q 005646 507 ADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDS 536 (686)
Q Consensus 507 ~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg 536 (686)
.++.|.+||..+ .++++|||++|+.+..++
T Consensus 292 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 292 QAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence 799999999753 256777888766665543
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.81 E-value=2.2e-18 Score=199.25 Aligned_cols=272 Identities=13% Similarity=0.114 Sum_probs=187.8
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeec-----
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE----- 281 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~----- 281 (686)
.+|+++ ..++.+ .++.|++|+...... ..+..|...+.+++|+|||++||++ .|+.|++|++.+
T Consensus 87 ~~~spd-~~~~~~-~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 87 TLDAGR-GLVVLF-TQGGLVGFDMLARKV--------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp EEETTT-TEEEEE-ETTEEEEEETTTTEE--------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred EEECCC-CeEEEE-ECCEEEEEECCCCce--------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 456666 555444 569999999865422 2344567789999999999999995 679999999987
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
++........... + .. +.+ ..+.+...+.++.
T Consensus 156 g~~~~~~~~~~~~---~-----------------------------------~~--------g~~--~~~ee~~~~~~~~ 187 (706)
T 2z3z_A 156 SRAIAVTIDGTET---L-----------------------------------VY--------GQA--VHQREFGIEKGTF 187 (706)
T ss_dssp CCCEESCSCCBTT---E-----------------------------------EE--------SSC--CGGGCTTCCCSEE
T ss_pred CCcEEeccCCCCC---e-----------------------------------Ec--------ccc--hhhhhcCCCceEE
Confidence 6533221111000 0 00 000 1122345578999
Q ss_pred eeCCC-EEEEEE---------------------------------CCCcEEEEECCCCeeeeEe---eCCCCeEEEEEee
Q 005646 362 WSKNN-YLLSAS---------------------------------IDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNP 404 (686)
Q Consensus 362 ~s~~~-~L~s~s---------------------------------~Dg~V~iWd~~~~~~~~~~---~h~~~V~~v~fsp 404 (686)
|+|+| +|++++ .+..|++||+.+++..... .|...+.+++|+|
T Consensus 188 ~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 267 (706)
T 2z3z_A 188 WSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP 267 (706)
T ss_dssp ECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC
Confidence 99999 888887 4478999999999876554 3678899999999
Q ss_pred cCCCEEEEEEcCC-----cEEEEecCCC-cEEEEe--ccCC---cEEEEEEcc--CCCEEEEEecCCcEEEEeCC-CCee
Q 005646 405 VDDNYFISGSIDG-----KVRIWAVLSC-HVVDWV--DIRQ---IVTAVCYRP--DGQGGIVGSMMGDCRFYNVS-DNHL 470 (686)
Q Consensus 405 ~~~~~l~sgs~Dg-----~V~iwd~~~~-~~~~~~--~~~~---~V~~v~~sp--dg~~l~~gs~dg~i~iwd~~-~~~~ 470 (686)
++++|++++.++ .|++||+.++ ...... .... .+..++|+| ||+++++++.+|.++||++. ++..
T Consensus 268 -dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~ 346 (706)
T 2z3z_A 268 -DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL 346 (706)
T ss_dssp -TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE
T ss_pred -CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE
Confidence 999999988876 8999999998 443333 2222 246789999 99999999999999999875 3322
Q ss_pred eeeeeEEeeccccCCCCCeEE-EEEeCCCCCeEEEEe-CCC----cEEEEeCCc-------------ceeEcCCCCEEEE
Q 005646 471 ELDAEICVHSKKKAPCKRITG-FQFLPQDSSKVMVSC-ADS----QVRILQGPN-------------VIGKYKDGKHIVS 531 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~-l~fsp~~~~~l~~~s-~D~----~I~iwd~~~-------------~~~~~~dg~~l~s 531 (686)
.. . ...+...+.. +.|+| +++.|++++ .++ .|..||..+ .++++|||++|+.
T Consensus 347 ~~----~----l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~ 417 (706)
T 2z3z_A 347 IR----Q----VTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIID 417 (706)
T ss_dssp EE----E----CCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEE
T ss_pred EE----e----cCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEE
Confidence 11 1 1223455766 79999 666665544 444 566666432 3678999999987
Q ss_pred EeCC----CcEEEEeCCCCC
Q 005646 532 AGED----SNVYMWNCIGHE 547 (686)
Q Consensus 532 gs~D----g~V~iWd~~~~~ 547 (686)
...+ +.|++||+.+++
T Consensus 418 ~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 418 IFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEECSSCSCEEEEEESSSCE
T ss_pred EecCCCCCcEEEEEECCCCe
Confidence 6544 569999998765
No 145
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=5.7e-17 Score=171.28 Aligned_cols=254 Identities=13% Similarity=0.175 Sum_probs=175.7
Q ss_pred eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC----CcEEEEEeecC--eeeeeeccCCC
Q 005646 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD----GVVRLWQVVED--ERLTEVDIPEI 293 (686)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I~vWd~~~~--~~~~~~~~~~~ 293 (686)
+.++.|.+|.++.....+..+ ..+ |...+..++|+|||++|++++.+ +.|.+|++... +. .
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~---~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~-~------- 90 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPL---SDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL-H------- 90 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEE---EEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE-E-------
T ss_pred CCCCCEEEEEEeCCCCCEEEe---ecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE-E-------
Confidence 346789999886544333222 122 67788899999999999999886 79999998763 21 0
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s 372 (686)
.+.....+......+++ ++ +|++++
T Consensus 91 ----------------------------------------------------~~~~~~~~~~~p~~~~~--dg~~l~~~~ 116 (361)
T 3scy_A 91 ----------------------------------------------------LLNTQKTMGADPCYLTT--NGKNIVTAN 116 (361)
T ss_dssp ----------------------------------------------------EEEEEECSSSCEEEEEE--CSSEEEEEE
T ss_pred ----------------------------------------------------EeeEeccCCCCcEEEEE--CCCEEEEEE
Confidence 12222334456677777 55 666665
Q ss_pred -CCCcEEEEECCCCeeeeEe----eC-----------CCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCc-------
Q 005646 373 -IDKTVRLWRVGNDHCLRVF----PH-----------SNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCH------- 428 (686)
Q Consensus 373 -~Dg~V~iWd~~~~~~~~~~----~h-----------~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~------- 428 (686)
.+++|.+|++.....+..+ .+ ...+.+++|+| +++++++++ .++.|++|++....
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~ 195 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEK 195 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence 6889999999765433221 12 23468899999 898666655 48899999887533
Q ss_pred E-------EEEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 429 V-------VDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 429 ~-------~~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
+ .........+..++|+|||+++++++ .++.|.+|++.++.+.....+. ....+.....+++|+| +++
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~sp-dg~ 271 (361)
T 3scy_A 196 FLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA---ADTVNAQGSGDIHLSP-DGK 271 (361)
T ss_dssp CEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE---SCSSCCCCEEEEEECT-TSS
T ss_pred eeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe---cCCCCCCCcccEEECC-CCC
Confidence 1 12233455688999999999887777 6899999999877654322221 1222345578999999 777
Q ss_pred eEEEEeC--CCcEEEEeCC------------------cceeEcCCCCEEEEEe-CCCcEEEEeCCC
Q 005646 501 KVMVSCA--DSQVRILQGP------------------NVIGKYKDGKHIVSAG-EDSNVYMWNCIG 545 (686)
Q Consensus 501 ~l~~~s~--D~~I~iwd~~------------------~~~~~~~dg~~l~sgs-~Dg~V~iWd~~~ 545 (686)
+|+++.. ++.|.+|+.. ..++++|||++|++++ .++.|.+|+++.
T Consensus 272 ~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 272 YLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 7766655 5899999863 2356889999999888 678999976653
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.80 E-value=1e-17 Score=174.39 Aligned_cols=222 Identities=14% Similarity=0.169 Sum_probs=162.3
Q ss_pred EEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEe
Q 005646 257 KFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (686)
Q Consensus 257 ~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (686)
.|.++++ .+++++.++.|++||+.+++.+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~----------------------------------------------- 36 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI----------------------------------------------- 36 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-----------------------------------------------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-----------------------------------------------
Confidence 4555555 4778888999999999887643222
Q ss_pred CCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEEC-CCcEEEEECCCCee-eeEee-CCCCeEEEEEeecCCCEEE
Q 005646 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 336 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWd~~~~~~-~~~~~-h~~~V~~v~fsp~~~~~l~ 411 (686)
..+...+ .++|+|++ +|++++. ++.|.+||+.+++. ...+. +..+..+++|+| ++++++
T Consensus 37 ---------------~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~ 99 (331)
T 3u4y_A 37 ---------------TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAV 99 (331)
T ss_dssp ---------------ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEE
T ss_pred ---------------EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEE
Confidence 2234455 99999999 6666655 89999999999987 66666 445554599999 999998
Q ss_pred EEEcCC---cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEE-ecCCc-EEEEeCCCCeeeeeeeEEeeccccCCC
Q 005646 412 SGSIDG---KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGD-CRFYNVSDNHLELDAEICVHSKKKAPC 486 (686)
Q Consensus 412 sgs~Dg---~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~g-s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~ 486 (686)
++..++ .|++||+.+++.+........+..++|+|||++++++ ..++. |.+|++............ .....
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~----~~~~~ 175 (331)
T 3u4y_A 100 TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE----FISGG 175 (331)
T ss_dssp ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE----EECSS
T ss_pred EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc----cccCC
Confidence 655553 8999999999988777777778999999999866655 45588 999999865433222111 11233
Q ss_pred CCeEEEEEeCCCCCeE-EEEeCCCcEEEEeCCc-----------------ceeEcCCCCEEEEEe-CCCcEEEEeCCCCC
Q 005646 487 KRITGFQFLPQDSSKV-MVSCADSQVRILQGPN-----------------VIGKYKDGKHIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l-~~~s~D~~I~iwd~~~-----------------~~~~~~dg~~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
..+.+++|+| +++.+ ++...++.|++||..+ .++++|||++|+.++ .++.|.+||+.+++
T Consensus 176 ~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 176 TRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp SSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred CCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 5589999999 66654 5555789999999642 256888999777665 57889999998865
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=2.1e-18 Score=194.83 Aligned_cols=254 Identities=9% Similarity=0.052 Sum_probs=188.3
Q ss_pred ceeeecCCCccceeec-cceEEEEEcCCccccccccccCceecccC-CceEEEEEeeCCCEEEEEeC---CCcEEEEEee
Q 005646 206 GERVRLNEEDAMFCSK-VQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLASAGD---DGVVRLWQVV 280 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~-d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~---Dg~I~vWd~~ 280 (686)
...++++|+.+++++. +++++||++.... . ..+..|. ..|..++|+|| +++++++. +...+||.+.
T Consensus 26 ~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 26 SLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--T------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEETTE--E------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred eeecCCCCCeEEEEEccCCceeEEEEcCCC--c------EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 4578899999999887 9999999974321 1 2344455 68999999999 88888775 5667887775
Q ss_pred c--CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCee
Q 005646 281 E--DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (686)
Q Consensus 281 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 358 (686)
. .... ..+..+ ..+.
T Consensus 97 ~~~~g~~--------------------------------------------------------------~~l~~~-~~~~ 113 (582)
T 3o4h_A 97 TSRPGEE--------------------------------------------------------------QRLEAV-KPMR 113 (582)
T ss_dssp TTSTTCC--------------------------------------------------------------EECTTS-CSBE
T ss_pred ccCCCcc--------------------------------------------------------------ccccCC-CCce
Confidence 4 2100 011111 1233
Q ss_pred EEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC----CcEEEEecCCCcEEEE
Q 005646 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID----GKVRIWAVLSCHVVDW 432 (686)
Q Consensus 359 ~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D----g~V~iwd~~~~~~~~~ 432 (686)
..+|+|++ .+++++.++.+.+||+.++++.....+.. .+++|+| |+++|++++.+ +.|++||+.+++...+
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l 190 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF 190 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEE
T ss_pred eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEe
Confidence 55777776 44455555556699999998877666544 8999999 99999988877 7899999999998888
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCC--cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE--------EeCCCCCeE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ--------FLPQDSSKV 502 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~--------fsp~~~~~l 502 (686)
..+...+..++|+|||+.|+++..+| .|++||+.+++... ...+...+..+. |+| ++.++
T Consensus 191 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~sp-dg~~~ 260 (582)
T 3o4h_A 191 DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVED---------LELPSKDFSSYRPTAITWLGYLP-DGRLA 260 (582)
T ss_dssp CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEE---------CCCSCSHHHHHCCSEEEEEEECT-TSCEE
T ss_pred ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEE---------ccCCCcChhhhhhccccceeEcC-CCcEE
Confidence 88888899999999999999888888 89999998876541 122334455555 999 55888
Q ss_pred EEEeCCCcEEEEeCC----------cceeEcCCCCEEEEEeCCCc---EEEEeCCC
Q 005646 503 MVSCADSQVRILQGP----------NVIGKYKDGKHIVSAGEDSN---VYMWNCIG 545 (686)
Q Consensus 503 ~~~s~D~~I~iwd~~----------~~~~~~~dg~~l~sgs~Dg~---V~iWd~~~ 545 (686)
++++.|+.+++|+.- ..++++ +++++++++.+.+ |++|+..+
T Consensus 261 ~~~~~~g~~~l~~~g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 261 VVARREGRSAVFIDGERVEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEETTEEEEEETTEEECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEcCCcEEEEEECCeeccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999999999999861 135677 9999999888754 77777654
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=9.3e-19 Score=190.05 Aligned_cols=196 Identities=17% Similarity=0.141 Sum_probs=140.1
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
...+..+++++++.+|++++.|+ ++||+....... ........
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~~--------------------------------- 78 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDPN--------------------------------- 78 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCTT---------------------------------
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cccccCcc---------------------------------
Confidence 34688999999999999999988 999886532110 00000000
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE----EEECCCcEEEEECCCC--------ee---eeEee-
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL----SASIDKTVRLWRVGND--------HC---LRVFP- 392 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~----s~s~Dg~V~iWd~~~~--------~~---~~~~~- 392 (686)
.... ..+... ..|...|.+++|+|++ +|+ +++.|++|+|||+.++ ++ +..+.
T Consensus 79 -~~~~---------~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 147 (434)
T 2oit_A 79 -KIVD---------KVQGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD 147 (434)
T ss_dssp -CEEE---------CCCCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS
T ss_pred -cccc---------cCcccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC
Confidence 0000 001111 2367889999999999 888 7889999999998754 22 23333
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
|...|++++|+|.++++|++++.||+|++||++++..+ ....|...|++++|+|+|++|++|+.||+|++||++ ++..
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 89999999999944899999999999999999988655 455678899999999999999999999999999998 3322
Q ss_pred eeeeEEeeccc-cCCCCCeEEEEEeC
Q 005646 472 LDAEICVHSKK-KAPCKRITGFQFLP 496 (686)
Q Consensus 472 ~~~~~~~~~~~-~~~~~~I~~l~fsp 496 (686)
. .+..+... ..|...|.++.|++
T Consensus 227 ~--~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 227 K--VIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp E--EECCCTTCCTTSCEEEEEEEEEE
T ss_pred c--cccCCcccCCCCceeEEEEEEec
Confidence 1 11111111 12334789999998
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=3.5e-18 Score=197.59 Aligned_cols=262 Identities=11% Similarity=0.124 Sum_probs=177.3
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCcee-----------cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeec
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI-----------QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l-----------~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~ 281 (686)
++.+++++.++ | +||..+.......+.....+ +.+...|.+++|+|| ++|+.+. |+.|++||+.+
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~ 110 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLA 110 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECCC
Confidence 56667777777 8 99987654300111111000 112257999999999 6665553 59999999987
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
++.. .+..+...+.+++
T Consensus 111 ~~~~---------------------------------------------------------------~l~~~~~~~~~~~ 127 (706)
T 2z3z_A 111 RKVT---------------------------------------------------------------YLFDTNEETASLD 127 (706)
T ss_dssp TEEE---------------------------------------------------------------EEECCTTCCTTCE
T ss_pred CceE---------------------------------------------------------------EccCCcccccCCc
Confidence 6521 2223556788899
Q ss_pred eeCCC-EEEEEECCCcEEEEECCC-----CeeeeEee-CCCC--------------eEEEEEeecCCCEEEEEE------
Q 005646 362 WSKNN-YLLSASIDKTVRLWRVGN-----DHCLRVFP-HSNY--------------VTCVHFNPVDDNYFISGS------ 414 (686)
Q Consensus 362 ~s~~~-~L~s~s~Dg~V~iWd~~~-----~~~~~~~~-h~~~--------------V~~v~fsp~~~~~l~sgs------ 414 (686)
|+|+| +|+++ .|+.|++||+.+ ++...... +... +.+++|+| |+++|++++
T Consensus 128 ~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~ 205 (706)
T 2z3z_A 128 FSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMV 205 (706)
T ss_dssp ECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTS
T ss_pred CCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCC
Confidence 99999 77774 689999999998 77665444 2222 58999999 999999998
Q ss_pred ---------------------------cCCcEEEEecCCCcEEEEe---ccCCcEEEEEEccCCCEEEEEecCC-----c
Q 005646 415 ---------------------------IDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMG-----D 459 (686)
Q Consensus 415 ---------------------------~Dg~V~iwd~~~~~~~~~~---~~~~~V~~v~~spdg~~l~~gs~dg-----~ 459 (686)
.+..|++||+.+++..... .+...+..++|+|||+.|++++.++ .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 285 (706)
T 2z3z_A 206 KPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK 285 (706)
T ss_dssp CCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEE
T ss_pred ceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeE
Confidence 4467999999998866443 3556799999999999999988776 8
Q ss_pred EEEEeCCCC-eeeeeeeEEeeccccCCCCCeEEEEEeC-CCCCeEEEEeCCCcEEEEeCC----------------c-ce
Q 005646 460 CRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSCADSQVRILQGP----------------N-VI 520 (686)
Q Consensus 460 i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~I~~l~fsp-~~~~~l~~~s~D~~I~iwd~~----------------~-~~ 520 (686)
|++||+.++ ....... .........+..+.|+| .++++++++..|+.++||... . .+
T Consensus 286 v~~~d~~~g~~~~~~~~----~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~ 361 (706)
T 2z3z_A 286 VNAYDAETGRFVRTLFV----ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFA 361 (706)
T ss_dssp EEEEETTTCCEEEEEEE----EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEE
T ss_pred EEEEECCCCceeeEEEE----ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeee
Confidence 999999987 3322111 11111112346789998 245688888889988888532 1 15
Q ss_pred eEcCCCCEEEEEeCC-C----cEEEEeCCCCC
Q 005646 521 GKYKDGKHIVSAGED-S----NVYMWNCIGHE 547 (686)
Q Consensus 521 ~~~~dg~~l~sgs~D-g----~V~iWd~~~~~ 547 (686)
+++|||+.|+.++.+ + .|+.|++.++.
T Consensus 362 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 789999988766544 4 66777776643
No 150
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=1.2e-17 Score=174.14 Aligned_cols=188 Identities=19% Similarity=0.213 Sum_probs=141.8
Q ss_pred CCCCeeEEEeeCCC-EEEEEECC-CcEEEEECC--CCe--eeeEeeCCCCeEEEEEeecCCCEEEEEEc-CCcEEEEec-
Q 005646 353 HSGEILDLSWSKNN-YLLSASID-KTVRLWRVG--NDH--CLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAV- 424 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~s~s~D-g~V~iWd~~--~~~--~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~- 424 (686)
|...+.+++|+|++ +|++++.+ +.|++|++. +++ .+..+.....+.+++|+| ++++|++++. ++.|++||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 66778899999999 78888876 999999998 554 344555445899999999 8887777665 889999999
Q ss_pred --CCCcEEEEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 425 --LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 425 --~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
.+.+.+........+.+++|+|+|+++++++ .++.|++||+.+ +++........ .......+.+++|+| ++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p-dg~ 190 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV---TTVEGAGPRHMVFHP-NEQ 190 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE---ECSTTCCEEEEEECT-TSS
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc---ccCCCCCcceEEECC-CCC
Confidence 4444555555666789999999999888877 899999999987 54432210011 112235688999999 666
Q ss_pred eEE-EEeCCCcEEEEeCCc-------------------------ceeEcCCCCEEEE-EeCCCcEEEEeCCC
Q 005646 501 KVM-VSCADSQVRILQGPN-------------------------VIGKYKDGKHIVS-AGEDSNVYMWNCIG 545 (686)
Q Consensus 501 ~l~-~~s~D~~I~iwd~~~-------------------------~~~~~~dg~~l~s-gs~Dg~V~iWd~~~ 545 (686)
.++ ++..++.|++|+... .++++|+|++|+. +..|+.|++|++..
T Consensus 191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 555 445889999999631 2778899998875 45799999999974
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.78 E-value=1.8e-17 Score=168.34 Aligned_cols=226 Identities=12% Similarity=0.081 Sum_probs=164.1
Q ss_pred ceeeecCCCccceeeccceEEEEEcCC-ccccccccccCceeccc-CCceEEEEEeeCCCEEEEEe--CCCcEEEEEeec
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKK-RSKELSALYKGQEIQAH-DGSILTMKFSPDGQYLASAG--DDGVVRLWQVVE 281 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~-~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs--~Dg~I~vWd~~~ 281 (686)
...++++++++++++ ++.|.+|+... .... ..+.+| ...|.+++|+|+|++|++++ .++.++||.+..
T Consensus 46 ~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 46 APNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-------KVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp EEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-------ECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred eeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-------EeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 456788888888876 78999999876 4321 122334 47889999999999999999 446777777653
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
.. .....+..+ ..+..++
T Consensus 118 ~~-------------------------------------------------------------~~~~~~~~~-~~~~~~~ 135 (297)
T 2ojh_A 118 TG-------------------------------------------------------------GTPRLMTKN-LPSYWHG 135 (297)
T ss_dssp TC-------------------------------------------------------------CCCEECCSS-SSEEEEE
T ss_pred CC-------------------------------------------------------------CceEEeecC-CCccceE
Confidence 21 011122222 2488899
Q ss_pred eeCCC-EEE-EEECCCcEEEEEC--CCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecC--CCcEEEEec
Q 005646 362 WSKNN-YLL-SASIDKTVRLWRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVL--SCHVVDWVD 434 (686)
Q Consensus 362 ~s~~~-~L~-s~s~Dg~V~iWd~--~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~--~~~~~~~~~ 434 (686)
|+|++ +|+ +++.|+.++||++ .+++......+...+.+++|+| ++++|+.++ .++.++||++. .+....+..
T Consensus 136 ~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 136 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred ECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 99999 555 7888999999985 4455544445888999999999 888877766 58999999875 445555666
Q ss_pred cCCcEEEEEEccCCCEEEEEecC-----------CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMM-----------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
+...+..++|+|+|++|++++.+ +.|++||+.+++....... ..|...+..++|+| +++.|+
T Consensus 215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~~sp-dg~~l~ 287 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL------FGGQGTMNSPNWSP-DGDEFA 287 (297)
T ss_dssp CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE------EESTTTSCSCCBCT-TSSEEE
T ss_pred CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc------CCCCcccccceECC-CCCEEE
Confidence 77789999999999999988776 5699999988764332211 12446688899999 777777
Q ss_pred EEeCCC
Q 005646 504 VSCADS 509 (686)
Q Consensus 504 ~~s~D~ 509 (686)
+++.+.
T Consensus 288 ~~~~~~ 293 (297)
T 2ojh_A 288 YVRYFP 293 (297)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 776653
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.78 E-value=5.3e-18 Score=176.36 Aligned_cols=177 Identities=8% Similarity=-0.014 Sum_probs=133.8
Q ss_pred CeeEEEeeCCC-EE-EEEECCCcEEEEECCCCeeeeEeeCCC------CeEEEEEeecCCCEEEEEE------------c
Q 005646 356 EILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSN------YVTCVHFNPVDDNYFISGS------------I 415 (686)
Q Consensus 356 ~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~~------~V~~v~fsp~~~~~l~sgs------------~ 415 (686)
.+..++|+|++ +| ++++.++.|.+||+.+++.+..+.... .+.+++|+| ++++|++++ .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEeccccccccccccc
Confidence 36789999999 55 556668999999999999888776433 788999999 998888886 5
Q ss_pred CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
++.|++||+.+++.+........+..++|+|+|++++++ ++.|++||+.+++...... . .....+ +.|+
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~--~----~~~~~~---~~~s 182 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP--I----QSWEAE---TYAQ 182 (337)
T ss_dssp CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC--S----TTTTTT---TBCC
T ss_pred CceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee--c----cccCCC---ceeC
Confidence 799999999999888776667778899999999988888 6899999999887543211 1 010112 2677
Q ss_pred CCCCCeEEEEeC-CC-----------------------cEEEEeCCc----------------ceeEcCCCCEEEEEeCC
Q 005646 496 PQDSSKVMVSCA-DS-----------------------QVRILQGPN----------------VIGKYKDGKHIVSAGED 535 (686)
Q Consensus 496 p~~~~~l~~~s~-D~-----------------------~I~iwd~~~----------------~~~~~~dg~~l~sgs~D 535 (686)
| ++..+++.+. ++ .|.+||..+ .++++|||++|+++ +
T Consensus 183 ~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 183 P-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp C-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred C-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--C
Confidence 7 4444444332 22 467888654 27899999999988 7
Q ss_pred CcEEEEeCCCCC
Q 005646 536 SNVYMWNCIGHE 547 (686)
Q Consensus 536 g~V~iWd~~~~~ 547 (686)
+.|++||+.+++
T Consensus 260 ~~v~~~d~~~~~ 271 (337)
T 1pby_B 260 NVLESFDLEKNA 271 (337)
T ss_dssp SEEEEEETTTTE
T ss_pred CeEEEEECCCCc
Confidence 999999998754
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.77 E-value=5.7e-18 Score=196.21 Aligned_cols=224 Identities=13% Similarity=0.129 Sum_probs=162.7
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
.+.+++|+|||+++++ +.||+|++||+.+++..
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------------------------------- 50 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------------------------------- 50 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE----------------------------------------------
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE----------------------------------------------
Confidence 4678999999998877 78999999999887632
Q ss_pred EEEeCCccccccCCCeEEeccCCC---CeeEEEeeCCC-EEEEEECC---------CcEEEEECCCCeeeeEee---CCC
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSG---EILDLSWSKNN-YLLSASID---------KTVRLWRVGNDHCLRVFP---HSN 395 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~s~~~-~L~s~s~D---------g~V~iWd~~~~~~~~~~~---h~~ 395 (686)
..+.+|.. .|.+++|||+| +|++++.+ +.|.+||+.++++..... |..
T Consensus 51 ----------------~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 51 ----------------VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp ----------------EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred ----------------EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc
Confidence 22233433 48999999999 88888775 778899999987632222 445
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc-CCc------------------EEEEEEccCCCEEEEEec
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQI------------------VTAVCYRPDGQGGIVGSM 456 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~------------------V~~v~~spdg~~l~~gs~ 456 (686)
.+..++|+| ++++|+.++. +.|++||+.+++...+... ... +.+++|+|||+.|++++.
T Consensus 115 ~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~ 192 (723)
T 1xfd_A 115 KLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (723)
T ss_dssp CCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred cccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence 589999999 9999999885 7999999999877655432 222 378999999999999876
Q ss_pred CC----------------------------------cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeE
Q 005646 457 MG----------------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (686)
Q Consensus 457 dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l 502 (686)
++ .|++||+.+++.... +........+...+..++|+| +++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~--l~~~~~~~~~~~~~~~~~~Sp-Dg~~l 269 (723)
T 1xfd_A 193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE--MMPPDDPRMREYYITMVKWAT-STKVA 269 (723)
T ss_dssp ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE--CCCCCCGGGSSEEEEEEEESS-SSEEE
T ss_pred CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEE--eeCCccCCCccceeEEEEEeC-CCeEE
Confidence 53 789999887763211 111111112345689999999 77777
Q ss_pred EEEeC----CCcEEEEeCCc--------------------ceeEcCCCCEEEE--EeCCC------cEEEEeC
Q 005646 503 MVSCA----DSQVRILQGPN--------------------VIGKYKDGKHIVS--AGEDS------NVYMWNC 543 (686)
Q Consensus 503 ~~~s~----D~~I~iwd~~~--------------------~~~~~~dg~~l~s--gs~Dg------~V~iWd~ 543 (686)
++... +..|++||..+ .+.|+|||++|+. +..|+ .|++||+
T Consensus 270 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~ 342 (723)
T 1xfd_A 270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS 342 (723)
T ss_dssp EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred EEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec
Confidence 66643 35788898531 4568899997775 45677 5777773
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.76 E-value=3.9e-17 Score=184.45 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=164.3
Q ss_pred cCCceEEEEEeeCCCEEEEEeC-CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 249 HDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+..+|++++|+|||++||+++. ||+++||++.+++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------------------------- 56 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------------------------- 56 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-------------------------------------------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-------------------------------------------
Confidence 3568999999999999999887 99999999866542
Q ss_pred CCceEEEeCCccccccCCCeEEeccCC-CCeeEEEeeCCCEEEEEEC---CCcEEEEECCC--CeeeeEeeCCCCeEEEE
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHS-GEILDLSWSKNNYLLSASI---DKTVRLWRVGN--DHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~~~~L~s~s~---Dg~V~iWd~~~--~~~~~~~~h~~~V~~v~ 401 (686)
..+..|. ..+..++|+|+.++++++. +...+||.+.. ......+.....+...+
T Consensus 57 --------------------~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~ 116 (582)
T 3o4h_A 57 --------------------VKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILS 116 (582)
T ss_dssp --------------------EECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEE
T ss_pred --------------------EeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeee
Confidence 2222344 6889999999865666664 55667765543 22222444334456778
Q ss_pred EeecCCC-EEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecC----CcEEEEeCCCCeeeeeeeE
Q 005646 402 FNPVDDN-YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM----GDCRFYNVSDNHLELDAEI 476 (686)
Q Consensus 402 fsp~~~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~d----g~i~iwd~~~~~~~~~~~~ 476 (686)
|+| +++ .+++.+.++.+.+||+.+++...+..+.. .+++|+|||++|++++.+ +.|++||+.+++...
T Consensus 117 ~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~---- 189 (582)
T 3o4h_A 117 GVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV---- 189 (582)
T ss_dssp EEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE----
T ss_pred eCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE----
Confidence 999 664 44444555566699999998776665555 789999999999988777 789999998876532
Q ss_pred EeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC--cEEEEeCCc--------------cee--------EcCCCCEEEEE
Q 005646 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS--QVRILQGPN--------------VIG--------KYKDGKHIVSA 532 (686)
Q Consensus 477 ~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~--~I~iwd~~~--------------~~~--------~~~dg~~l~sg 532 (686)
...+...+..++|+| +++.|+++..++ .|++||..+ .+. |+|||++++++
T Consensus 190 -----l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~ 263 (582)
T 3o4h_A 190 -----FDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVA 263 (582)
T ss_dssp -----ECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEE
T ss_pred -----eecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEE
Confidence 123446689999999 888888888888 899998643 245 99999999999
Q ss_pred eCCCcEEEEeC
Q 005646 533 GEDSNVYMWNC 543 (686)
Q Consensus 533 s~Dg~V~iWd~ 543 (686)
+.|++++||++
T Consensus 264 ~~~g~~~l~~~ 274 (582)
T 3o4h_A 264 RREGRSAVFID 274 (582)
T ss_dssp EETTEEEEEET
T ss_pred EcCCcEEEEEE
Confidence 99999999999
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=3.5e-17 Score=171.17 Aligned_cols=264 Identities=9% Similarity=0.057 Sum_probs=167.3
Q ss_pred eeecCCCccceeeccceEEEEEcCCccccccccccCceecccC-CceEEEEEeeCCCEEE-EEeCCCcEEEEEeecCeee
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~La-sgs~Dg~I~vWd~~~~~~~ 285 (686)
.++.++..+++++.++.|.+||...... .+.+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTV-------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEE-------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcE-------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 4556677889999999999999865422 12222222 2578999999998665 5557899999999888754
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
..+..... + ..+...+..++|+|+
T Consensus 79 ~~~~~~~~----------------------------------------------------~----~~~~~~~~~~~~spd 102 (349)
T 1jmx_B 79 FHANLSSV----------------------------------------------------P----GEVGRSMYSFAISPD 102 (349)
T ss_dssp EEEESCCS----------------------------------------------------T----TEEEECSSCEEECTT
T ss_pred EEEEcccc----------------------------------------------------c----ccccccccceEECCC
Confidence 43321100 0 001234678999999
Q ss_pred C-EEEEEECC------------CcEEEEECCCCe---eeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 366 N-YLLSASID------------KTVRLWRVGNDH---CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 366 ~-~L~s~s~D------------g~V~iWd~~~~~---~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
+ +|++++.+ +.|.+||+.+++ .+..+.+...+.+++|+| +++ +++++ +.|++||+.+++.
T Consensus 103 g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 103 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKY 178 (349)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCE
T ss_pred CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCce
Confidence 9 88887755 899999998843 445556667899999999 888 55543 4599999999887
Q ss_pred EEEeccCC-------------------------cEEEEEEccCCCEEEEEecCC-cEEEEeCCCCeeeeeeeEEeecccc
Q 005646 430 VDWVDIRQ-------------------------IVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKK 483 (686)
Q Consensus 430 ~~~~~~~~-------------------------~V~~v~~spdg~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~ 483 (686)
+....... ....+++++++.......... .+..+|..+++..... ...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--- 252 (349)
T 1jmx_B 179 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE---FAD--- 252 (349)
T ss_dssp EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE---EEE---
T ss_pred eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc---ccc---
Confidence 75544332 344566665542111000000 1111333333322111 100
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 484 ~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+...+.+++|+|.+++.++++ ++.|.+||..+ .++++++|++|++++.++.|++||+.+++
T Consensus 253 -~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 253 -LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp -CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred -CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 224577888888444555555 77888887542 35677799999888889999999998765
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=2.5e-16 Score=166.94 Aligned_cols=257 Identities=11% Similarity=0.030 Sum_probs=170.6
Q ss_pred ceEEEEEcCCccccccccccCcee-cccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee-cCeeeeeeccCCCCCcceEE
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV-EDERLTEVDIPEIDPSCIYF 300 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~-~~~~~~~~~~~~~~~~~~~~ 300 (686)
+.|.+|+++.....+..+. .. .++...+..++|+|+|++|++++.+ .|.+|++. +++......
T Consensus 14 ~~i~~~~~d~~~g~l~~~~---~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~----------- 78 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIK---RTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS----------- 78 (365)
T ss_dssp CEEEEEEEETTTTEEEEEE---EEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE-----------
T ss_pred CcEEEEEEECCCCCEEEee---EEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE-----------
Confidence 4688877654333222111 11 1234568899999999999999988 99999997 665321110
Q ss_pred eecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-E--EEEEE-----
Q 005646 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y--LLSAS----- 372 (686)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~--L~s~s----- 372 (686)
...+ +.+.+++|+|+| + ++++.
T Consensus 79 -------------------------------------------------~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 79 -------------------------------------------------HPIG-GHPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp -------------------------------------------------EECC-SSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred -------------------------------------------------eecC-CCCccEEECCCCCEEEEEEecCCcce
Confidence 0011 124458889999 3 33442
Q ss_pred --------CCCcEEEEECC-CCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecC-CCcEEE--Eec
Q 005646 373 --------IDKTVRLWRVG-NDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVL-SCHVVD--WVD 434 (686)
Q Consensus 373 --------~Dg~V~iWd~~-~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~-~~~~~~--~~~ 434 (686)
.++++.+|++. .++....+. +...+.+++|+| ++++|+++.. ++.|++||+. +++... ...
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 187 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVD 187 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred eccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe
Confidence 68999999997 455543332 457899999999 9998887764 6799999998 776532 222
Q ss_pred ---cCCcEEEEEEccCCCEEEEEec-CCcEEEEeCC--CCeeeee-eeEEee-ccccCCCC------CeEEEE-EeCCCC
Q 005646 435 ---IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS--DNHLELD-AEICVH-SKKKAPCK------RITGFQ-FLPQDS 499 (686)
Q Consensus 435 ---~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~--~~~~~~~-~~~~~~-~~~~~~~~------~I~~l~-fsp~~~ 499 (686)
+...+..++|+|||+++++++. ++.|.+|++. ++++... ..+... .....+.. .+.+++ |+| ++
T Consensus 188 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG 266 (365)
T 1jof_A 188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SG 266 (365)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TS
T ss_pred cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CC
Confidence 2456899999999999888765 7899999875 4443221 111111 00011122 488999 999 77
Q ss_pred CeEEEEeCC-C-----cEEEEeCC-c------------------ceeEcC---CCCEEEEEeCC-CcEEEEeCCCC
Q 005646 500 SKVMVSCAD-S-----QVRILQGP-N------------------VIGKYK---DGKHIVSAGED-SNVYMWNCIGH 546 (686)
Q Consensus 500 ~~l~~~s~D-~-----~I~iwd~~-~------------------~~~~~~---dg~~l~sgs~D-g~V~iWd~~~~ 546 (686)
+.|+++..+ + .|++|+.. + .++++| ||++|++++.+ +.|+||+++..
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 777766543 3 89999753 1 134567 79999999875 89999998764
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.74 E-value=8.9e-16 Score=161.04 Aligned_cols=248 Identities=14% Similarity=0.130 Sum_probs=163.8
Q ss_pred cceeeecCCCccceeec---cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEEEEEee
Q 005646 205 EGERVRLNEEDAMFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVV 280 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~vWd~~ 280 (686)
....++++++ +++++. ++.|.+|++...... ....+..|...+..++|+|||++|++++ .++.|++|++.
T Consensus 43 ~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 43 TYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH-----KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp CCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 3467788888 665554 689999998543221 1223445778899999999999999888 67999999996
Q ss_pred cCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE
Q 005646 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (686)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 360 (686)
.......+... .... ..+. ...+...+.++
T Consensus 117 ~~g~~~~~~~~---------------------------------~~~~---------------~~p~--~~~~~~~~~~~ 146 (347)
T 3hfq_A 117 ADGALTLTDTV---------------------------------QHSG---------------HGPR--PEQDGSHIHYT 146 (347)
T ss_dssp TTSCEEEEEEE---------------------------------ECCC---------------CCSS--TTCSSCCEEEE
T ss_pred CCCCeeeccee---------------------------------ecCC---------------CCCC--ccccCCCceEE
Confidence 32211111000 0000 0000 01234568899
Q ss_pred EeeCCC-EEEEEECCCcEEEEECC-CCeeee--Eee--CCCCeEEEEEeecCCCEEEE-EEcCCcEEEEecCC--CcEEE
Q 005646 361 SWSKNN-YLLSASIDKTVRLWRVG-NDHCLR--VFP--HSNYVTCVHFNPVDDNYFIS-GSIDGKVRIWAVLS--CHVVD 431 (686)
Q Consensus 361 ~~s~~~-~L~s~s~Dg~V~iWd~~-~~~~~~--~~~--h~~~V~~v~fsp~~~~~l~s-gs~Dg~V~iwd~~~--~~~~~ 431 (686)
+|+|++ ++++...++.|++|++. +++... .+. ....+..++|+| +++++++ +..++.|++|++.. ++...
T Consensus 147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 999999 66677778999999998 454332 222 344788999999 8886555 55688999999874 54321
Q ss_pred ---EeccC------CcEEEEEEccCCCEEEE-EecCCcEEEEeCCCC-eeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 432 ---WVDIR------QIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 432 ---~~~~~------~~V~~v~~spdg~~l~~-gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
..... ..+..++|+|||++|++ ...++.|.+|++... .+..... ...+...+.+++|+| +++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~------~~~~~~~~~~~~~sp-dg~ 298 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ------ISTEGDFPRDFDLDP-TEA 298 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE------EECSSSCCCEEEECT-TSS
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE------EecCCCCcCeEEECC-CCC
Confidence 11222 34889999999998754 556899999999732 2222111 112334578999999 777
Q ss_pred eEEEEeC-CCcEEEEeC
Q 005646 501 KVMVSCA-DSQVRILQG 516 (686)
Q Consensus 501 ~l~~~s~-D~~I~iwd~ 516 (686)
+|+++.. ++.|.+|+.
T Consensus 299 ~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 299 FVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEE
Confidence 7777765 589999953
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=2.3e-16 Score=164.98 Aligned_cols=224 Identities=8% Similarity=-0.015 Sum_probs=156.7
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEE
Q 005646 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (686)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (686)
.+++++++.++++++.++.|++||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------------------------------------------- 39 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------------------------------------------- 39 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--------------------------------------------
Confidence 456788899999999999999999988774433321
Q ss_pred eCCccccccCCCeEEeccCCCCeeEEEeeCCC-EE-EEEECCCcEEEEECCCCeeeeEeeCC-------CCeEEEEEeec
Q 005646 335 FPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHS-------NYVTCVHFNPV 405 (686)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~h~-------~~V~~v~fsp~ 405 (686)
+....+..++|+|++ ++ ++...++.|.+||+.+++.+..+... ..+.+++|+|
T Consensus 40 -----------------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp- 101 (349)
T 1jmx_B 40 -----------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP- 101 (349)
T ss_dssp -----------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-
T ss_pred -----------------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-
Confidence 111246789999998 55 45567899999999999988777632 2378999999
Q ss_pred CCCEEEEEEcC------------CcEEEEecCCCc---EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 406 DDNYFISGSID------------GKVRIWAVLSCH---VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 406 ~~~~l~sgs~D------------g~V~iwd~~~~~---~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
++++|++++.+ +.|.+||+.+++ .+....+...+.+++|+|||+ +++++ +.|++||+.+++.
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY 178 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce
Confidence 99999998865 899999998854 334445556788999999999 66654 4499999988765
Q ss_pred eeeeeEEeecccc--------------CCC----CCeEEEEEeCCCC----------CeEEEEeCCCcEEEEeC------
Q 005646 471 ELDAEICVHSKKK--------------APC----KRITGFQFLPQDS----------SKVMVSCADSQVRILQG------ 516 (686)
Q Consensus 471 ~~~~~~~~~~~~~--------------~~~----~~I~~l~fsp~~~----------~~l~~~s~D~~I~iwd~------ 516 (686)
..... ...... ... ....++.++++.. .++.....++.+++++.
T Consensus 179 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
T 1jmx_B 179 TVALP--LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 256 (349)
T ss_dssp EEEEC--STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred ecccc--ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCc
Confidence 43211 110000 000 0234566664210 12234556677888874
Q ss_pred CcceeEcC-CCCEEEEEeCCCcEEEEeCCCCC
Q 005646 517 PNVIGKYK-DGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 517 ~~~~~~~~-dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
...++++| +|++|+++ ++.|++||+.+++
T Consensus 257 ~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 257 YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred ceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 24578899 99999998 8899999998754
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=184.29 Aligned_cols=261 Identities=10% Similarity=0.065 Sum_probs=176.6
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCC---ceEEEEEeeCCCEEEEEeC---------CCc
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG---SILTMKFSPDGQYLASAGD---------DGV 273 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~---------Dg~ 273 (686)
...+++++.. +..+.++.|++|+....... +.+.+|.. .|.+++|||||++||+++. |+.
T Consensus 20 ~~~~s~dg~~-~~~~~d~~i~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 20 FPNWISGQEY-LHQSADNNIVLYNIETGQSY-------TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp CCEESSSSEE-EEECTTSCEEEEESSSCCEE-------EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccEECCCCeE-EEEcCCCCEEEEEcCCCcEE-------EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence 4577788854 44456999999998765431 22333333 4899999999999999876 789
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
|++||+.+++.+... . .
T Consensus 92 i~~~d~~~g~~~~~~---------------------------------------------------------~------l 108 (719)
T 1z68_A 92 YYIYDLSNGEFVRGN---------------------------------------------------------E------L 108 (719)
T ss_dssp EEEEETTTTEECCSS---------------------------------------------------------C------C
T ss_pred EEEEECCCCccccce---------------------------------------------------------e------c
Confidence 999999887631100 0 0
Q ss_pred CCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCe-----------------EEEEEeecCCCEEEEE
Q 005646 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYV-----------------TCVHFNPVDDNYFISG 413 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V-----------------~~v~fsp~~~~~l~sg 413 (686)
...+..++|||+| .|+.+. ++.|++||+.++++..... +...| .+++|+| |+++|+++
T Consensus 109 ~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~ 186 (719)
T 1z68_A 109 PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYA 186 (719)
T ss_dssp CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEE
T ss_pred CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEE
Confidence 1357889999999 777775 7899999999887765432 33322 4899999 99999998
Q ss_pred EcCC----------------------------------cEEEEecCCCcEE---EE------eccCCcEEEEEEccCCCE
Q 005646 414 SIDG----------------------------------KVRIWAVLSCHVV---DW------VDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 414 s~Dg----------------------------------~V~iwd~~~~~~~---~~------~~~~~~V~~v~~spdg~~ 450 (686)
+.|. .|++||+.+++.. .. ..+...+..++|+||++.
T Consensus 187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~ 266 (719)
T 1z68_A 187 EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV 266 (719)
T ss_dssp EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE
T ss_pred EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE
Confidence 8663 7889999988742 22 246667899999999887
Q ss_pred EEEEecCC----cEEEEe----CCCCeeeeeeeEEeeccccCCCCCeE-----EEEEeCCCCCeEEE--EeCCC--cEEE
Q 005646 451 GIVGSMMG----DCRFYN----VSDNHLELDAEICVHSKKKAPCKRIT-----GFQFLPQDSSKVMV--SCADS--QVRI 513 (686)
Q Consensus 451 l~~gs~dg----~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~I~-----~l~fsp~~~~~l~~--~s~D~--~I~i 513 (686)
+++....+ .|++|| +.+++........ ...+...+. .+.|+| +++.++. ...++ .|.+
T Consensus 267 ~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 267 CLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI----EESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp EEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE----EECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeccccCeEEEEEEcccCCCCCCceEEEEecc----cccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEE
Confidence 77644332 488899 7666543321100 012334454 789999 5564443 33555 4666
Q ss_pred EeCCc--------------ceeEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 005646 514 LQGPN--------------VIGKYKDGKHIVSAGED-----SNVYMWNCIG 545 (686)
Q Consensus 514 wd~~~--------------~~~~~~dg~~l~sgs~D-----g~V~iWd~~~ 545 (686)
|+..+ .+.++ +++.|+..+.+ +.+++|.+..
T Consensus 342 ~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 342 IKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp ESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 66432 13445 77777766654 8899998765
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.69 E-value=9.9e-15 Score=153.96 Aligned_cols=250 Identities=11% Similarity=0.122 Sum_probs=165.3
Q ss_pred cceeeecCCCccceeecc----ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe-CCCcEEEEEe
Q 005646 205 EGERVRLNEEDAMFCSKV----QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQV 279 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d----~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~vWd~ 279 (686)
....++++++.+++++.+ +.|.+|++......+.. ...+..+......+++ ++++|++++ .++.|.+|++
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~---~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL---LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE---EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE---eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence 346788899988888775 79999988764222221 1233345567778888 888888877 5789999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.....+..+... .... . .-......+...+.+
T Consensus 128 ~~~g~~~~~~~~--------~~~~----------------------g------------------~~~~~~~~~~~~~~~ 159 (361)
T 3scy_A 128 GQDGALLPASDV--------IEFK----------------------G------------------SGPDKERQTMPHLHC 159 (361)
T ss_dssp CTTSCBCSCSEE--------EECC----------------------C------------------CCSCTTTCSSCCEEE
T ss_pred CCCCcCccccee--------EEcc----------------------C------------------CCCCccccCCCcceE
Confidence 754422111000 0000 0 000000123445788
Q ss_pred EEeeCCC-EEEEEE-CCCcEEEEECCCCee--------------eeEeeCCCCeEEEEEeecCCCEEEEEE-cCCcEEEE
Q 005646 360 LSWSKNN-YLLSAS-IDKTVRLWRVGNDHC--------------LRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIW 422 (686)
Q Consensus 360 l~~s~~~-~L~s~s-~Dg~V~iWd~~~~~~--------------~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iw 422 (686)
++|+|++ +|+.++ .++.|++|++..... .....+...+..++|+| +++++++++ .++.|++|
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEE
Confidence 9999999 565555 589999999875432 12223567789999999 999887777 68999999
Q ss_pred ecCCCcEEEEe------ccCCcEEEEEEccCCCEEEEEecC--CcEEEEeCC--CCeeeeeeeEEeeccccCCCCCeEEE
Q 005646 423 AVLSCHVVDWV------DIRQIVTAVCYRPDGQGGIVGSMM--GDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 423 d~~~~~~~~~~------~~~~~V~~v~~spdg~~l~~gs~d--g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~I~~l 492 (686)
|+.++.+.... .+...+..++|+|||++|+++..+ +.|.+|++. ++++.....+.. ...+.++
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-------g~~~~~~ 311 (361)
T 3scy_A 239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-------GIHPRNF 311 (361)
T ss_dssp EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-------SSCCCEE
T ss_pred EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-------CCCCceE
Confidence 99987653221 122446899999999998776654 889999996 444332222211 2457899
Q ss_pred EEeCCCCCeEEEEe-CCCcEEEEeC
Q 005646 493 QFLPQDSSKVMVSC-ADSQVRILQG 516 (686)
Q Consensus 493 ~fsp~~~~~l~~~s-~D~~I~iwd~ 516 (686)
+|+| ++++|++++ .++.|.+|..
T Consensus 312 ~~sp-dg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 312 IITP-NGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp EECT-TSCEEEEEETTTTEEEEEEE
T ss_pred EECC-CCCEEEEEECCCCCEEEEEE
Confidence 9999 777777776 6789999653
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.69 E-value=2.2e-15 Score=160.30 Aligned_cols=266 Identities=11% Similarity=0.009 Sum_probs=173.2
Q ss_pred eeeecCCCccceeec-cce--EEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 207 ERVRLNEEDAMFCSK-VQR--VKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~-d~~--v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
..|++++++++..+. ++. |.+|+..... .. +...+|...+..+.|+|||++|+.++.++.|++||+.+++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~--~~-----~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV--AT-----QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCE--EE-----ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc--eE-----EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 468999999988887 664 6666655432 21 2233455566678899999999999999999999998876
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEE--E
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL--S 361 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l--~ 361 (686)
....... +...+... .
T Consensus 114 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~ 131 (388)
T 3pe7_A 114 ENVVYQV--------------------------------------------------------------PAEWVGYGTWV 131 (388)
T ss_dssp EEEEEEC--------------------------------------------------------------CTTEEEEEEEE
T ss_pred ceeeeec--------------------------------------------------------------hhhccccccee
Confidence 4332221 22222222 2
Q ss_pred eeCCC-EEEE----------------------EECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC--
Q 005646 362 WSKNN-YLLS----------------------ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-- 416 (686)
Q Consensus 362 ~s~~~-~L~s----------------------~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-- 416 (686)
+++++ +|+. ...+..|.+||+.+++......+...+..++|+|.+++.|+..+.+
T Consensus 132 ~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~ 211 (388)
T 3pe7_A 132 ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPH 211 (388)
T ss_dssp ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCT
T ss_pred ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCC
Confidence 25555 3332 2245789999999998777777888899999999556777766653
Q ss_pred ----CcEEEEecCCCcEEEEeccC--CcEEEEEEccCCCEEEEEec-CC----cEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 417 ----GKVRIWAVLSCHVVDWVDIR--QIVTAVCYRPDGQGGIVGSM-MG----DCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 417 ----g~V~iwd~~~~~~~~~~~~~--~~V~~v~~spdg~~l~~gs~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
..|.++|+.++....+..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++..............
T Consensus 212 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~-- 289 (388)
T 3pe7_A 212 DLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLM-- 289 (388)
T ss_dssp TTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEE--
T ss_pred CCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeee--
Confidence 37888888777665555544 35788999999998866443 22 3999999988754322211100000
Q ss_pred CCCeEEEEEeCCCCCeEEEE---------eCCCcEEEEeCCc-------------------------ceeEcCCCCEEEE
Q 005646 486 CKRITGFQFLPQDSSKVMVS---------CADSQVRILQGPN-------------------------VIGKYKDGKHIVS 531 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~---------s~D~~I~iwd~~~-------------------------~~~~~~dg~~l~s 531 (686)
.....+.|+| +++.|+.. ..+..|++||..+ ..+|+|||++|+.
T Consensus 290 -~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 290 -SNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp -ECTTSSEEEE-EECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred -ecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 0012236899 55555543 4567899998542 2378899998887
Q ss_pred Ee-CCCcEEEEeCCC
Q 005646 532 AG-EDSNVYMWNCIG 545 (686)
Q Consensus 532 gs-~Dg~V~iWd~~~ 545 (686)
++ .+|...||.++-
T Consensus 368 ~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 368 TSDVHGKPALYLATL 382 (388)
T ss_dssp EECTTSSCEEEEEEC
T ss_pred EecCCCceeEEEEEC
Confidence 66 467777776543
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=182.71 Aligned_cols=227 Identities=9% Similarity=0.050 Sum_probs=158.1
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEE
Q 005646 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (686)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (686)
+++|+|||++++++ .|+.|++||+.+++...
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~------------------------------------------------ 50 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYT------------------------------------------------ 50 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEE------------------------------------------------
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEE------------------------------------------------
Confidence 78999999766654 69999999998876322
Q ss_pred eCCccccccCCCeEEeccCCC---CeeEEEeeCCC-EEEEEEC---------CCcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 335 FPPKVFRILEKPLHEFHGHSG---EILDLSWSKNN-YLLSASI---------DKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~h~~---~V~~l~~s~~~-~L~s~s~---------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
.+.+|.. .|.+++||||| +|++++. +++|++||+.+++.+........+..++
T Consensus 51 --------------~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~ 116 (719)
T 1z68_A 51 --------------ILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLC 116 (719)
T ss_dssp --------------EECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEE
T ss_pred --------------EEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccce
Confidence 1222322 48899999999 8888776 7899999999998742222246789999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcE-----------------EEEEEccCCCEEEEEecCC----
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIV-----------------TAVCYRPDGQGGIVGSMMG---- 458 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V-----------------~~v~~spdg~~l~~gs~dg---- 458 (686)
|+| |++.|+.+. ++.|++||+.+++...+. ++...| .+++|+|||++|++++.|.
T Consensus 117 ~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 117 WSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194 (719)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred ECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence 999 999999886 789999999988765433 222222 4899999999999987652
Q ss_pred ------------------------------cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 459 ------------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 459 ------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.|++||+.+++......+........+...+..++|+| ++.++++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~ 273 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKR 273 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEES
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEecc
Confidence 78899998765320001111011224566789999999 56666664332
Q ss_pred ----CcEEEEe----CCc------------------------ceeEcCCCCEEEE--EeCCC--cEEEEeCCCCC
Q 005646 509 ----SQVRILQ----GPN------------------------VIGKYKDGKHIVS--AGEDS--NVYMWNCIGHE 547 (686)
Q Consensus 509 ----~~I~iwd----~~~------------------------~~~~~~dg~~l~s--gs~Dg--~V~iWd~~~~~ 547 (686)
..|.+|| ..+ ...|+|||+.|+. ...+| .|++|++.+++
T Consensus 274 ~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 3488899 321 3458889996554 44555 57777776654
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.66 E-value=6.2e-15 Score=156.87 Aligned_cols=230 Identities=14% Similarity=0.083 Sum_probs=162.2
Q ss_pred ecccCCceEE-----EEEeeCCCEEEEEeC-CCc--EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeecccc
Q 005646 246 IQAHDGSILT-----MKFSPDGQYLASAGD-DGV--VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317 (686)
Q Consensus 246 l~~H~~~I~~-----l~fspdg~~Lasgs~-Dg~--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (686)
+..|...... .+|+|||++|+.++. ++. |.+||+.+++...
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~------------------------------- 74 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ------------------------------- 74 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------------------
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------------------
Confidence 4455555555 789999999999987 674 7777877765221
Q ss_pred ceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCC
Q 005646 318 ISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSN 395 (686)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~ 395 (686)
...+|...+..+.|+|++ .|+.++.++.|++||+.+++....+. +..
T Consensus 75 -------------------------------lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~ 123 (388)
T 3pe7_A 75 -------------------------------LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE 123 (388)
T ss_dssp -------------------------------CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT
T ss_pred -------------------------------eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh
Confidence 112344455567899999 99999999999999999998877766 445
Q ss_pred CeEEEE--EeecCCCEEEEEE----------------------cCCcEEEEecCCCcEEEEeccCCcEEEEEEcc-CCCE
Q 005646 396 YVTCVH--FNPVDDNYFISGS----------------------IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQG 450 (686)
Q Consensus 396 ~V~~v~--fsp~~~~~l~sgs----------------------~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~ 450 (686)
.+.... ++| ++.+++... .+..|++||+.+++...+..+...+..++|+| ||+.
T Consensus 124 ~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~ 202 (388)
T 3pe7_A 124 WVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDST 202 (388)
T ss_dssp EEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEE
T ss_pred cccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCE
Confidence 454444 377 888877432 34679999999998888777888899999999 9999
Q ss_pred EEEEecC------CcEEEEeCCCCeeeeeeeEEeeccccCCC-CCeEEEEEeCCCCCeEEEEeC-CC----cEEEEeCCc
Q 005646 451 GIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAPC-KRITGFQFLPQDSSKVMVSCA-DS----QVRILQGPN 518 (686)
Q Consensus 451 l~~gs~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~I~~l~fsp~~~~~l~~~s~-D~----~I~iwd~~~ 518 (686)
|+....+ ..|.++|+.+...... ..... ..+..+.|+| +++.|+..+. ++ .|++||..+
T Consensus 203 l~~~~~~~~~~~~~~l~~~d~~~~~~~~l--------~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (388)
T 3pe7_A 203 VAFCHEGPHDLVDARMWLINEDGTNMRKV--------KTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPET 273 (388)
T ss_dssp EEEEECSCTTTSSCSEEEEETTSCCCEES--------CCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTT
T ss_pred EEEEEecCCCCCcceEEEEeCCCCceEEe--------eeCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCC
Confidence 8887653 3788888876543221 11111 2477889999 6666654432 22 399998653
Q ss_pred c--------------------eeEcCCCCEEEEE---------eCCCcEEEEeCCCCC
Q 005646 519 V--------------------IGKYKDGKHIVSA---------GEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ~--------------------~~~~~dg~~l~sg---------s~Dg~V~iWd~~~~~ 547 (686)
. ..|+|||++|+.. ..+..|++||+.+++
T Consensus 274 g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 274 LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp CCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 1 2578899888854 456789999998764
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.66 E-value=2.8e-15 Score=174.13 Aligned_cols=234 Identities=9% Similarity=0.068 Sum_probs=161.5
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
...++.|+|||++|+++ |+.|++||+.+++....+..+..
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~-------------------------------------- 57 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF-------------------------------------- 57 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT--------------------------------------
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh--------------------------------------
Confidence 45689999999999996 89999999998874333221110
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECC---------CcEEEEECCCCeeeeEeeCCCCeEEEE
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID---------KTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~D---------g~V~iWd~~~~~~~~~~~h~~~V~~v~ 401 (686)
..+.....+++||||| +|+.++.+ +.+.+||+.++++.....|...+..++
T Consensus 58 -------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~ 118 (740)
T 4a5s_A 58 -------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVT 118 (740)
T ss_dssp -------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEE
T ss_pred -------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeE
Confidence 0122233568999999 88888876 556799999999876556888999999
Q ss_pred EeecCCCEEEEEEcCCcEEEEecCCCcEEEEec--cCCcE-----------------EEEEEccCCCEEEEEecCC----
Q 005646 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIV-----------------TAVCYRPDGQGGIVGSMMG---- 458 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~~~~V-----------------~~v~~spdg~~l~~gs~dg---- 458 (686)
|+| |++.|+.+. |+.|++||+.++....+.. ....+ .++.|+|||+.||.++.|.
T Consensus 119 ~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 119 WSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP 196 (740)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred ECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc
Confidence 999 999998885 7899999999887654332 22222 3589999999999876432
Q ss_pred --------------------------------cEEEEeCCC---CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 459 --------------------------------DCRFYNVSD---NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 459 --------------------------------~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
+|++||+.+ +.......+........+...+..++|+| +++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~ 275 (740)
T 4a5s_A 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISL 275 (740)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEE
T ss_pred eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEE
Confidence 367777776 52111111111000112556689999999 667655
Q ss_pred EEeC----CCcEEEEeCCc----------------------------ceeEcCCCCEEE-EEeCC---CcEEEEeCCCCC
Q 005646 504 VSCA----DSQVRILQGPN----------------------------VIGKYKDGKHIV-SAGED---SNVYMWNCIGHE 547 (686)
Q Consensus 504 ~~s~----D~~I~iwd~~~----------------------------~~~~~~dg~~l~-sgs~D---g~V~iWd~~~~~ 547 (686)
.... +..|++||..+ ...|+|||+.|+ ..+++ ..|++|++.++.
T Consensus 276 ~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 276 QWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred EEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 5432 34688998321 246789999887 77643 468889988765
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=2.2e-13 Score=138.52 Aligned_cols=230 Identities=7% Similarity=0.070 Sum_probs=167.9
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
+|-..+.+++++++|+++++...++.|++||.. ++.+..+....
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~----------------------------------- 70 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----------------------------------- 70 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-----------------------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC-----------------------------------
Confidence 466789999999999988888889999999975 44322221000
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEee-CCCEEEEEEC--CCcEEEEECCCCeeeeEee--CCCCeEEEEE
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-KNNYLLSASI--DKTVRLWRVGNDHCLRVFP--HSNYVTCVHF 402 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-~~~~L~s~s~--Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~f 402 (686)
.-.+|...+..+++. +++.|+.+.. ++.|++|| .+++.+..+. +...+.++++
T Consensus 71 ---------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~ 128 (286)
T 1q7f_A 71 ---------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV 128 (286)
T ss_dssp ---------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE
T ss_pred ---------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE
Confidence 001345678899994 6775555553 89999999 5677777765 4567899999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEEe---ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 479 (686)
+| +++++++...++.|++||.. ++.+... .....+..++++|+|+++++...++.|++||.....+.. +.
T Consensus 129 ~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~-----~~ 201 (286)
T 1q7f_A 129 DN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQ-----IG 201 (286)
T ss_dssp CT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEE-----ES
T ss_pred eC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEE-----Ec
Confidence 99 88888888888999999965 4444333 233568999999999988887889999999986432211 11
Q ss_pred ccccCCCCCeEEEEEeCCCCCeEEEEeCCC-cEEEEeCCc----------------ceeEcCCCCEEEEEeCCCcEEEEe
Q 005646 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADS-QVRILQGPN----------------VIGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 480 ~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~-~I~iwd~~~----------------~~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
...+...+.++++++ ++.++++...++ .|++|+... .+++.++|+++++ +.|+.|++|+
T Consensus 202 --~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 202 --GEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp --CTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred --cCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 112235689999999 677777777776 999998431 3677889987777 6799999999
Q ss_pred CCCC
Q 005646 543 CIGH 546 (686)
Q Consensus 543 ~~~~ 546 (686)
+...
T Consensus 278 ~~~~ 281 (286)
T 1q7f_A 278 YVQL 281 (286)
T ss_dssp CSCC
T ss_pred cccc
Confidence 8654
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=2.6e-14 Score=151.12 Aligned_cols=258 Identities=11% Similarity=0.101 Sum_probs=173.8
Q ss_pred ccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC----------CCcEEEEEeecCeeeeeecc
Q 005646 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----------DGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----------Dg~I~vWd~~~~~~~~~~~~ 290 (686)
.++.|.+||...... ...+..+..+ .++|+|||++|+++.. +++|.+||+.+.+.+..+..
T Consensus 29 ~d~~v~v~D~~t~~~-------~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 29 TESRVHVYDYTNGKF-------LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp GGCEEEEEETTTCCE-------EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred ccCeEEEEECCCCeE-------EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 478999998755432 1234555555 8999999999999863 67899999988776554432
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEE
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~ 369 (686)
.... ..+......++++|+| +|+
T Consensus 100 ~~~~--------------------------------------------------------~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 100 PPKR--------------------------------------------------------VQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp CTTB--------------------------------------------------------CCBCCCGGGEEECTTSSEEE
T ss_pred Cccc--------------------------------------------------------cccCCCcceEEECCCCCEEE
Confidence 1100 0123456789999999 777
Q ss_pred EEEC--CCcEEEEECCCCeeeeE-eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-CcEEEEe------ccCCcE
Q 005646 370 SASI--DKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVVDWV------DIRQIV 439 (686)
Q Consensus 370 s~s~--Dg~V~iWd~~~~~~~~~-~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~~~~~------~~~~~V 439 (686)
++.. +++|.+||+.+++.+.. +..... ..+.+.|.....+++.+.||++.+|++.. +++.... ......
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~ 202 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP 202 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC
T ss_pred EECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc
Confidence 7763 68999999999999888 765433 33667784457889999999999999865 5554211 111112
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCC----CCCeEEEEEeCCCCCeEEEEeC--------
Q 005646 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP----CKRITGFQFLPQDSSKVMVSCA-------- 507 (686)
Q Consensus 440 ~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~I~~l~fsp~~~~~l~~~s~-------- 507 (686)
..+.++|++..++..+.++.+.++|+..........+........+ ......++|+| ++..++++..
T Consensus 203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~ 281 (361)
T 2oiz_A 203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTH 281 (361)
T ss_dssp BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCT
T ss_pred eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccc
Confidence 2344578888888888999999999976543322221111100000 01122378999 5565555432
Q ss_pred ---CCcEEEEeCCc-------------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 508 ---DSQVRILQGPN-------------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 508 ---D~~I~iwd~~~-------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.+.|.+||..+ .++++|||++|++++. +.|.|||..++
T Consensus 282 ~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 282 KFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred cCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 35799999643 4678999999999887 99999999887
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.63 E-value=1.9e-14 Score=167.12 Aligned_cols=238 Identities=10% Similarity=0.103 Sum_probs=159.6
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---------CcEEE
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---------GVVRL 276 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---------g~I~v 276 (686)
-..+++++.+++++ ++.|++|+...... ..+.....+..+......+.|||||++|+.++.+ +.+.+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNS--SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCE--EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCce--EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 45677888777775 89999999876543 1222222222233334568999999999999876 55669
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++.. .+..|...
T Consensus 97 ~d~~~~~~~---------------------------------------------------------------~l~~~~~~ 113 (740)
T 4a5s_A 97 YDLNKRQLI---------------------------------------------------------------TEERIPNN 113 (740)
T ss_dssp EETTTTEEC---------------------------------------------------------------CSSCCCTT
T ss_pred EECCCCcEE---------------------------------------------------------------EcccCCCc
Confidence 999887621 13346678
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee--CCCCe-----------------EEEEEeecCCCEEEEEEcC
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYV-----------------TCVHFNPVDDNYFISGSID 416 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V-----------------~~v~fsp~~~~~l~sgs~D 416 (686)
+...+||||| .||.++ |+.|++|++.+++..+... +...+ ..+.|+| |+++|+.++.|
T Consensus 114 ~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d 191 (740)
T 4a5s_A 114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFN 191 (740)
T ss_dssp EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEE
T ss_pred ceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEc
Confidence 9999999999 777774 7899999998887554322 22223 3589999 99999988643
Q ss_pred C------------------------------------cEEEEecCC---C---cEEEEec------cCCcEEEEEEccCC
Q 005646 417 G------------------------------------KVRIWAVLS---C---HVVDWVD------IRQIVTAVCYRPDG 448 (686)
Q Consensus 417 g------------------------------------~V~iwd~~~---~---~~~~~~~------~~~~V~~v~~spdg 448 (686)
. +|++||+.+ + +...+.. +...+..++|+|||
T Consensus 192 ~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg 271 (740)
T 4a5s_A 192 DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE 271 (740)
T ss_dssp CTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred ccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC
Confidence 2 488899988 7 4444432 66679999999999
Q ss_pred CEEEEEec----CCcEEEEeCCCCe----eeeeeeEEeeccccCCCCCe-----EEEEEeCCCCCeEE-EEeC-C--CcE
Q 005646 449 QGGIVGSM----MGDCRFYNVSDNH----LELDAEICVHSKKKAPCKRI-----TGFQFLPQDSSKVM-VSCA-D--SQV 511 (686)
Q Consensus 449 ~~l~~gs~----dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~I-----~~l~fsp~~~~~l~-~~s~-D--~~I 511 (686)
+.++.... +..|++||+.+++ +.....+.. ..+...| ....|+| +++.++ ..+. + ..|
T Consensus 272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~----~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE----MSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHI 346 (740)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE----ECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEE
T ss_pred eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee----ccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEE
Confidence 97766543 3369999998876 222111110 1122333 3678999 666655 5553 3 457
Q ss_pred EEEeCC
Q 005646 512 RILQGP 517 (686)
Q Consensus 512 ~iwd~~ 517 (686)
.+|+..
T Consensus 347 ~~~~~~ 352 (740)
T 4a5s_A 347 CYFQID 352 (740)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 777754
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.62 E-value=3.3e-14 Score=150.50 Aligned_cols=240 Identities=12% Similarity=0.082 Sum_probs=159.6
Q ss_pred ceeeecCCCccceeeccceEEEEEcC-CccccccccccCceecccCCceEEEEEeeCCCE--EEEEe-------------
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCK-KRSKELSALYKGQEIQAHDGSILTMKFSPDGQY--LASAG------------- 269 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~-~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~--Lasgs------------- 269 (686)
...++++++.+++++.+ .|.+|++. ... +.... ....+ +.+.+++|+|||++ ++++.
T Consensus 44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~--~~~~~---~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTE--IVHEA---SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp EEEECTTSSEEEEEEBT-EEEEEEEEETTE--EEEEE---EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred EEEECCCCCEEEEEccc-eEEEEEECCCCC--EEEee---EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 35678888888888877 99999985 321 11110 11111 23556899999994 55653
Q ss_pred CCCcEEEEEeec-CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeE
Q 005646 270 DDGVVRLWQVVE-DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLH 348 (686)
Q Consensus 270 ~Dg~I~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (686)
.++.+.+|++.. ++....+ .
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~-----------------------------------------------------------~ 137 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNV-----------------------------------------------------------Q 137 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEE-----------------------------------------------------------E
T ss_pred CCceEEEEccCCCCcCcceE-----------------------------------------------------------e
Confidence 689999999863 4321111 0
Q ss_pred Ee-ccCCCCeeEEEeeCCC-EEEEEEC-CCcEEEEECC-CCeee--eEee---CCCCeEEEEEeecCCCEEEEEEc-CCc
Q 005646 349 EF-HGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVG-NDHCL--RVFP---HSNYVTCVHFNPVDDNYFISGSI-DGK 418 (686)
Q Consensus 349 ~l-~~h~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWd~~-~~~~~--~~~~---h~~~V~~v~fsp~~~~~l~sgs~-Dg~ 418 (686)
.+ ..+...+.+++|+|+| +|+++.. ++.|++||+. +++.. ..+. |...+..++|+| +++++++++. ++.
T Consensus 138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~ 216 (365)
T 1jof_A 138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNR 216 (365)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTE
T ss_pred eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCe
Confidence 00 1245678899999999 7776654 6899999998 67643 2333 367799999999 9998888775 689
Q ss_pred EEEEecC--CCcEEE----Eecc-------CC------cEEEEE-EccCCCEEEEEecCC------cEEEEeCC-CCeee
Q 005646 419 VRIWAVL--SCHVVD----WVDI-------RQ------IVTAVC-YRPDGQGGIVGSMMG------DCRFYNVS-DNHLE 471 (686)
Q Consensus 419 V~iwd~~--~~~~~~----~~~~-------~~------~V~~v~-~spdg~~l~~gs~dg------~i~iwd~~-~~~~~ 471 (686)
|.+|++. +++... .... .. .+..++ |+|||++|++++.+. .|.+|++. ++++.
T Consensus 217 v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred EEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 9999875 555421 1111 11 488999 999999988776533 89999996 45433
Q ss_pred eeeeEEeeccccCCCCCeEEEEEeCC--CCCeEEEEeC-CCcEEEEeCC
Q 005646 472 LDAEICVHSKKKAPCKRITGFQFLPQ--DSSKVMVSCA-DSQVRILQGP 517 (686)
Q Consensus 472 ~~~~~~~~~~~~~~~~~I~~l~fsp~--~~~~l~~~s~-D~~I~iwd~~ 517 (686)
..... . ..+...+..++|+|. ++++|+++.. ++.|++|+..
T Consensus 297 ~~~~~-~----~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 297 KQLFL-S----PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEEE-E----ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred Eeeee-e----ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 21110 1 112234667899995 5788888876 4899999864
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.59 E-value=6.3e-14 Score=149.17 Aligned_cols=279 Identities=10% Similarity=0.028 Sum_probs=172.5
Q ss_pred eeeecCCCccceeecc---ceEEEEEcCCccccccccccCceecccCCc-eEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 207 ERVRLNEEDAMFCSKV---QRVKVYHCKKRSKELSALYKGQEIQAHDGS-ILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d---~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
..++++|++++..... ..|.+|+...... . .+..+... ...+.|+|||++|+.++.++.|++||+.++
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~--~------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA--V------QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEE--E------ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcE--E------EeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 4688899988776543 3677777654321 1 12223333 334789999999999999999999999887
Q ss_pred eeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEe
Q 005646 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (686)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 362 (686)
+.......+.. +. +.+ ..+++.... ....+ ....+.|
T Consensus 113 ~~~~~~~~~~~------~~-------------~~g-------------~~l~~~~~~------~~~~~-----~~~~~~~ 149 (396)
T 3c5m_A 113 EEQVIYTVDEE------WK-------------GYG-------------TWVANSDCT------KLVGI-----EILKRDW 149 (396)
T ss_dssp CEEEEEECCTT------EE-------------EEE-------------EEEECTTSS------EEEEE-----EEEGGGC
T ss_pred CcEEEEecccc------cC-------------CCC-------------CEEEeccCC------ccccc-----ccccccc
Confidence 64433322111 00 000 000000000 00000 0012457
Q ss_pred eCCC-EEEEE-----ECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC------CcEEEEecCCCcEE
Q 005646 363 SKNN-YLLSA-----SIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVV 430 (686)
Q Consensus 363 s~~~-~L~s~-----s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D------g~V~iwd~~~~~~~ 430 (686)
+|++ .++.+ ..+..|.+||+.+++......+...+..+.|+|.++..|+..+.+ ..|.+||+.+++..
T Consensus 150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (396)
T 3c5m_A 150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR 229 (396)
T ss_dssp CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE
T ss_pred CCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee
Confidence 7887 44433 467789999999988777777888899999999446666665543 36889998777655
Q ss_pred EEecc--CCcEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 431 DWVDI--RQIVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 431 ~~~~~--~~~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
.+..+ ...+..++|+|||+.|+.++.+ +.|++||+.+++...... . .... +.|+|.++..++
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~------~----~~~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV------M----PPCS-HLMSNFDGSLMV 298 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE------C----CSEE-EEEECSSSSEEE
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee------C----CCCC-CCccCCCCceEE
Confidence 44443 2357889999999988777554 449999998776432111 0 1133 889983455666
Q ss_pred EEe----------------CCCcEEEEeCCc-------------------------ceeEcCCCCEEEEEeC-CCcEEEE
Q 005646 504 VSC----------------ADSQVRILQGPN-------------------------VIGKYKDGKHIVSAGE-DSNVYMW 541 (686)
Q Consensus 504 ~~s----------------~D~~I~iwd~~~-------------------------~~~~~~dg~~l~sgs~-Dg~V~iW 541 (686)
+++ .+..|++||..+ ...++|||++|+.++. ++...||
T Consensus 299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp EEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred EecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 644 347899998531 1467889999888775 4555555
Q ss_pred --eCCCCC
Q 005646 542 --NCIGHE 547 (686)
Q Consensus 542 --d~~~~~ 547 (686)
++.++.
T Consensus 379 ~~~~~~~~ 386 (396)
T 3c5m_A 379 IADVPESY 386 (396)
T ss_dssp EEECCTTC
T ss_pred EEEEcccc
Confidence 444443
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.58 E-value=1.8e-13 Score=156.79 Aligned_cols=190 Identities=10% Similarity=0.047 Sum_probs=129.6
Q ss_pred CCCCeeEEEeeCCC-EEEEEECC----------CcEEEEECCC------CeeeeEe-eCCCCeEEEEEeecCCCEEEEEE
Q 005646 353 HSGEILDLSWSKNN-YLLSASID----------KTVRLWRVGN------DHCLRVF-PHSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 353 h~~~V~~l~~s~~~-~L~s~s~D----------g~V~iWd~~~------~~~~~~~-~h~~~V~~v~fsp~~~~~l~sgs 414 (686)
|...+..++|+|+| .|++++.| ..|++||+.+ ++..... .+...+..++|+| |+++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence 56678899999999 88888876 5899999988 6665555 5667888999999 999999888
Q ss_pred cCC--------cEEEEecC-CC---cEEEEec-cCCcEEEEEEccCCCEEEEEecCC--cEEEEeCCCCeeeeeeeEEee
Q 005646 415 IDG--------KVRIWAVL-SC---HVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNHLELDAEICVH 479 (686)
Q Consensus 415 ~Dg--------~V~iwd~~-~~---~~~~~~~-~~~~V~~v~~spdg~~l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~ 479 (686)
.++ .|++||+. ++ +...+.. +...+..++|+|||++++++..++ .|++||+.+++...... ..
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~--~~ 284 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR--RE 284 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC--CS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc--cc
Confidence 653 79999999 56 4444444 467899999999999888888888 56677765655432111 00
Q ss_pred ccccCC--CCCeEEEEEeCCCCCeEEEEeCCCcEEEE--eCCcc------------eeE-cCCCC--EEEEEeCCC--cE
Q 005646 480 SKKKAP--CKRITGFQFLPQDSSKVMVSCADSQVRIL--QGPNV------------IGK-YKDGK--HIVSAGEDS--NV 538 (686)
Q Consensus 480 ~~~~~~--~~~I~~l~fsp~~~~~l~~~s~D~~I~iw--d~~~~------------~~~-~~dg~--~l~sgs~Dg--~V 538 (686)
...... .-.+..++|+| ++.+++++.. +.++|| |..+. ..+ .++++ ++++++.+. .|
T Consensus 285 ~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp SBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEE
Confidence 000000 00145788988 6788888888 999998 53311 122 44444 334455554 45
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
++||+.+++
T Consensus 363 ~~~d~~~g~ 371 (662)
T 3azo_A 363 VELDTVTGR 371 (662)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 556666654
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=2.1e-12 Score=134.24 Aligned_cols=253 Identities=9% Similarity=0.022 Sum_probs=169.8
Q ss_pred eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~ 287 (686)
.++++...++..+.++.+++|.-. . ...+..|...+.+++|+++|++++++..++.|.+||..+++...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~- 80 (333)
T 2dg1_A 12 FYSGKSNSAVPIISESELQTITAE----P------WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR- 80 (333)
T ss_dssp CSCGGGGCSSCCCCGGGSCEEECE----E------EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-
T ss_pred eecCCccceeEEeecccCcccccc----e------eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-
Confidence 444555566666778888888211 1 12345566778999999999988888889999999987664211
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~- 366 (686)
....+...+.++++++++
T Consensus 81 -------------------------------------------------------------~~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 81 -------------------------------------------------------------PFVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp -------------------------------------------------------------EEECSSSSEEEEEECTTSC
T ss_pred -------------------------------------------------------------EeeCCCCCcceEEECCCCc
Confidence 111245678999999999
Q ss_pred EEEEEECC----CcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEc------CCcEEEEecCCCcEEEEe
Q 005646 367 YLLSASID----KTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSI------DGKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 367 ~L~s~s~D----g~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~------Dg~V~iwd~~~~~~~~~~ 433 (686)
++++...+ +.|.+||..++.....+. +...+.+++++| +++++++... .+.|..||..+++.....
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 55555555 689999998876653332 456799999999 8888877654 356777777666665544
Q ss_pred ccCCcEEEEEEccCCCEEEE-EecCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcE
Q 005646 434 DIRQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~-gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I 511 (686)
.....+..++|+|+|+.+++ .+.++.|++||+.+ +................+ ..+.++++.+ ++.++++...++.|
T Consensus 179 ~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~-~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 179 QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS-DDNLYVAMYGQGRV 256 (333)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT-TCCEEEEEETTTEE
T ss_pred cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC-CCCEEEEEcCCCEE
Confidence 44456789999999986654 45678999999964 221111000000001111 3578899999 67777777778899
Q ss_pred EEEeCC--------------------cceeEcCCCCEEEEEeCC
Q 005646 512 RILQGP--------------------NVIGKYKDGKHIVSAGED 535 (686)
Q Consensus 512 ~iwd~~--------------------~~~~~~~dg~~l~sgs~D 535 (686)
.+||.. ..+++.+|++.|+.++.+
T Consensus 257 ~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 257 LVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999742 235566787666655544
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.56 E-value=1.6e-13 Score=157.06 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=161.4
Q ss_pred ceecccCCceEEEEEeeCCCEEEEE--eCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLASA--GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasg--s~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
+.+.+|...|..++|++++-++++. +.++...||....+.....+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--------------------------------- 63 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA--------------------------------- 63 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES---------------------------------
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee---------------------------------
Confidence 3467799999999999887777777 66889999997443322222
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCee---------EEEee--CCC-E-EEEEEC-CCcEEEEECC--C-
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL---------DLSWS--KNN-Y-LLSASI-DKTVRLWRVG--N- 384 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~---------~l~~s--~~~-~-L~s~s~-Dg~V~iWd~~--~- 384 (686)
..|...+. ...|+ ||| . |+.++. +..|.+|++. .
T Consensus 64 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~ 114 (662)
T 3azo_A 64 -----------------------------LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGG 114 (662)
T ss_dssp -----------------------------SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTC
T ss_pred -----------------------------CCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCC
Confidence 12222222 44555 888 6 666554 5567777765 3
Q ss_pred CeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcC----------CcEEEEecCC------CcEEEEe-ccCCcEEEE
Q 005646 385 DHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSID----------GKVRIWAVLS------CHVVDWV-DIRQIVTAV 442 (686)
Q Consensus 385 ~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~D----------g~V~iwd~~~------~~~~~~~-~~~~~V~~v 442 (686)
+....... |...+..++|+| +++.|++++.+ ..|++||+.+ ++...+. .+...+..+
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (662)
T 3azo_A 115 AVPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGP 193 (662)
T ss_dssp CCCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCC
T ss_pred CCCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCc
Confidence 44333333 466789999999 99999998877 5899999998 7766666 666778889
Q ss_pred EEccCCCEEEEEecCC--------cEEEEeCC-CCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC--cE
Q 005646 443 CYRPDGQGGIVGSMMG--------DCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS--QV 511 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg--------~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~--~I 511 (686)
+|+|||++|+.++.++ .|++||+. ++.......+. ..+...+..+.|+| ++++++++..++ .|
T Consensus 194 ~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-----~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l 267 (662)
T 3azo_A 194 RLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-----GGPEEAIAQAEWAP-DGSLIVATDRTGWWNL 267 (662)
T ss_dssp EECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-----EETTBCEEEEEECT-TSCEEEEECTTSSCEE
T ss_pred eECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-----CCCCceEcceEECC-CCeEEEEECCCCCeEE
Confidence 9999999999887553 79999998 45221111111 12235689999999 566888888888 56
Q ss_pred EEEeCCc-----------------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 512 RILQGPN-----------------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 512 ~iwd~~~-----------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.+||..+ .++++++++++++++. +.++||.++
T Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 268 HRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 6666421 2455679999999999 999999443
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.55 E-value=2.5e-12 Score=130.66 Aligned_cols=236 Identities=10% Similarity=0.095 Sum_probs=160.2
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEe-eCCCEEEEEeC-CCcEEEEEeecCee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFS-PDGQYLASAGD-DGVVRLWQVVEDER 284 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs-pdg~~Lasgs~-Dg~I~vWd~~~~~~ 284 (686)
..+.+++..+++...++.|.+|+..... .........-.+|...+.++++. ++++++++... ++.|++|+ .+++.
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~ 111 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQF 111 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCE
T ss_pred EEECCCCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcE
Confidence 3455666767777788999999865321 11111111112456679999995 67766666543 78999999 44442
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 364 (686)
+..+. ..+...+.++++++
T Consensus 112 ~~~~~-------------------------------------------------------------~~~~~~~~~i~~~~ 130 (286)
T 1q7f_A 112 VRKFG-------------------------------------------------------------ATILQHPRGVTVDN 130 (286)
T ss_dssp EEEEC-------------------------------------------------------------TTTCSCEEEEEECT
T ss_pred EEEec-------------------------------------------------------------CccCCCceEEEEeC
Confidence 22111 12334678999999
Q ss_pred CC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc---CC
Q 005646 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQ 437 (686)
Q Consensus 365 ~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~---~~ 437 (686)
++ ++++...++.|.+||.. ++.+..+. +...+.+|+++| +++++++...++.|++||... +.+..... ..
T Consensus 131 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~ 207 (286)
T 1q7f_A 131 KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITN 207 (286)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSC
T ss_pred CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccC
Confidence 99 66666678999999964 55666664 446789999999 888888888899999999854 44433332 25
Q ss_pred cEEEEEEccCCCEEEEEecCC-cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 438 IVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 438 ~V~~v~~spdg~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
.+..++++|+|+++++...++ .|.+||.... .... +.. ......+.+++++| ++.++++ +.|++|++|+.
T Consensus 208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~~--~~~----~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 208 YPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISA--LES----KVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp SEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEE--EEE----SSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEEC
T ss_pred CCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEEE--Ecc----cCCCCcceeEEECC-CCcEEEE-CCCCeEEEEEc
Confidence 689999999999888887776 9999996543 2221 111 11223478999999 6665555 67999999986
Q ss_pred Cc
Q 005646 517 PN 518 (686)
Q Consensus 517 ~~ 518 (686)
..
T Consensus 279 ~~ 280 (286)
T 1q7f_A 279 VQ 280 (286)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.54 E-value=1.3e-12 Score=136.17 Aligned_cols=229 Identities=11% Similarity=0.065 Sum_probs=154.8
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe-eeeeeccCCCCCcceEEe
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE-RLTEVDIPEIDPSCIYFT 301 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~-~~~~~~~~~~~~~~~~~~ 301 (686)
+.|.+|+...... .. ..-.++-.....|+++|+|+++++...++.|++|+..... .+..+.....
T Consensus 69 ~~i~~~d~~~g~~--~~----~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-------- 134 (329)
T 3fvz_A 69 DTILVIDPNNAEI--LQ----SSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ-------- 134 (329)
T ss_dssp CCEEEECTTTCCE--EE----EECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB--------
T ss_pred CcEEEEECCCCeE--Ee----ccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC--------
Confidence 4688888654322 11 0112455678999999999998888889999999975432 1111110000
Q ss_pred ecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeC-CC-EEEEEE-CCCcEE
Q 005646 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSAS-IDKTVR 378 (686)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~L~s~s-~Dg~V~ 378 (686)
...-.++......++++| ++ ++++.+ .++.|+
T Consensus 135 ---------------------------------------------~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 135 ---------------------------------------------PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp ---------------------------------------------CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred ---------------------------------------------CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 000013455678999999 67 566665 589999
Q ss_pred EEECCCCeeeeEee-CC----------CCeEEEEEeecC-CCEEEEEEcCCcEEEEecCCCcEEEEec---cCCcEEEEE
Q 005646 379 LWRVGNDHCLRVFP-HS----------NYVTCVHFNPVD-DNYFISGSIDGKVRIWAVLSCHVVDWVD---IRQIVTAVC 443 (686)
Q Consensus 379 iWd~~~~~~~~~~~-h~----------~~V~~v~fsp~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---~~~~V~~v~ 443 (686)
+|+ ..++.+..+. .. .....|+++| + +.++++...++.|++||..+++.+.... +...+.+++
T Consensus 170 ~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 170 QFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred EEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 999 5677777765 21 3489999999 6 7788888889999999999888776553 445788999
Q ss_pred Ecc------CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 444 YRP------DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 444 ~sp------dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
|+| +|+.+++...+..|++||+.++++.... .....+...+.+++++|
T Consensus 248 ~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~-----~~~~~~~~~p~~ia~~~--------------------- 301 (329)
T 3fvz_A 248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF-----KPVRKHFDMPHDIVASE--------------------- 301 (329)
T ss_dssp EETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE-----CCSSSCCSSEEEEEECT---------------------
T ss_pred ecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE-----cCCCCccCCeeEEEECC---------------------
Confidence 999 3333333344568999999887754321 11234556688899988
Q ss_pred cceeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 518 NVIGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 518 ~~~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
+|.++++...++.|++|+++.
T Consensus 302 -------dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 -------DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -------TSEEEEEESSSCCEEEEEEEE
T ss_pred -------CCCEEEEECCCCEEEEEeCCc
Confidence 676677777777787777754
No 175
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=4e-13 Score=154.89 Aligned_cols=268 Identities=12% Similarity=0.045 Sum_probs=173.9
Q ss_pred eecCCCccceeeccc---eEEEEEcCCccccccccccCce-ecccCCceEEEEEeeCCCEEE-----EEeCCCcEEEEEe
Q 005646 209 VRLNEEDAMFCSKVQ---RVKVYHCKKRSKELSALYKGQE-IQAHDGSILTMKFSPDGQYLA-----SAGDDGVVRLWQV 279 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~---~v~vw~~~~~~~~~~~~~~~~~-l~~H~~~I~~l~fspdg~~La-----sgs~Dg~I~vWd~ 279 (686)
.+++|++++....++ .-.||.......+...+..... -.+|...+..++|||||++|| +|+.+..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 346777776665543 3455554322222222222111 235777899999999999999 4555678999999
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+++.+.. ..+... ....
T Consensus 155 ~tg~~~~~------------------------------------------------------------~~~~~~--~~~~ 172 (695)
T 2bkl_A 155 DSGEWSKV------------------------------------------------------------DVIEGG--KYAT 172 (695)
T ss_dssp TTCCBCSS------------------------------------------------------------CCBSCC--TTCC
T ss_pred CCCCCcCC------------------------------------------------------------cccCcc--cccc
Confidence 88763200 000011 1257
Q ss_pred EEeeCCC-EEEEEECCCc-------------EEEEECCCCee--eeEee---CCCCeEEEEEeecCCCEEEEEEcCC---
Q 005646 360 LSWSKNN-YLLSASIDKT-------------VRLWRVGNDHC--LRVFP---HSNYVTCVHFNPVDDNYFISGSIDG--- 417 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~-------------V~iWd~~~~~~--~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg--- 417 (686)
++|+|+| .|+.++.|.. |++|++.+++. ...+. +...+..+.|+| ++++|+.++.++
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~ 251 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSE 251 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTE
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCc
Confidence 8999999 8888888876 99999998762 22332 556899999999 999888887766
Q ss_pred -cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEec----CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEE
Q 005646 418 -KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 418 -~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l 492 (686)
.|++|+..+++...+..+...+....+ ++|+ ++..+. ++.|.+||+.++.......+... .+...+..+
T Consensus 252 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~l~~~ 325 (695)
T 2bkl_A 252 NDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE----DSSASLLSV 325 (695)
T ss_dssp EEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC----CSSCEEEEE
T ss_pred eEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecC----CCCCeEEEE
Confidence 788888777776666666666666666 6777 555443 57899999976542100111111 113457788
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEeCC-----------------cceeEcCCCCEEEEE----eCCCcEEEEeCCCCC
Q 005646 493 QFLPQDSSKVMVSCADSQVRILQGP-----------------NVIGKYKDGKHIVSA----GEDSNVYMWNCIGHE 547 (686)
Q Consensus 493 ~fsp~~~~~l~~~s~D~~I~iwd~~-----------------~~~~~~~dg~~l~sg----s~Dg~V~iWd~~~~~ 547 (686)
.|+ ++.++++...|+..+||... ..+.++++++.|+.. ...++|++||+.+++
T Consensus 326 ~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 326 SIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 887 45788888889888777321 113455688777632 345789999998876
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.51 E-value=1.7e-13 Score=145.80 Aligned_cols=180 Identities=11% Similarity=0.032 Sum_probs=127.1
Q ss_pred EEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEE-------------------EEEeecCCCEEEEE----
Q 005646 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC-------------------VHFNPVDDNYFISG---- 413 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~-------------------v~fsp~~~~~l~sg---- 413 (686)
.+.|+|++ +|+.++.++.|++||+.+++....+. +...... +.|+| +++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~ 163 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYH 163 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeecc
Confidence 47899999 89999999999999999988766665 3332222 24566 55555443
Q ss_pred -EcCCcEEEEecCCCcEEEEeccCCcEEEEEEcc-CCCEEEEEecC------CcEEEEeCCCCeeeeeeeEEeeccccCC
Q 005646 414 -SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAP 485 (686)
Q Consensus 414 -s~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~sp-dg~~l~~gs~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 485 (686)
..+..|++||+.+++......+...+..+.|+| +|+.|+..+.+ ..|.+||+.+++..... . ...
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----~--~~~ 236 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK-----E--HAE 236 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS-----C--CCT
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee-----c--cCC
Confidence 356689999999988877777778899999999 88877776543 36888898765432110 0 001
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCC-----CcEEEEeCCcc------------eeEcC-CCCEEEEEe--------------
Q 005646 486 CKRITGFQFLPQDSSKVMVSCAD-----SQVRILQGPNV------------IGKYK-DGKHIVSAG-------------- 533 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D-----~~I~iwd~~~~------------~~~~~-dg~~l~sgs-------------- 533 (686)
...+..+.|+| +++.|+.++.+ +.|++||..+. ..++| ||++|++++
T Consensus 237 ~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 237 GESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp TEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------C
T ss_pred CccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccc
Confidence 23478899999 66766665543 44999986431 45788 999998865
Q ss_pred --CCCcEEEEeCCCCC
Q 005646 534 --EDSNVYMWNCIGHE 547 (686)
Q Consensus 534 --~Dg~V~iWd~~~~~ 547 (686)
.++.|++||+.+++
T Consensus 316 ~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKS 331 (396)
T ss_dssp CCCCCEEEEEETTTTB
T ss_pred cCCCCcEEEEecccCc
Confidence 34789999998765
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.49 E-value=4.5e-12 Score=132.44 Aligned_cols=235 Identities=10% Similarity=0.079 Sum_probs=152.7
Q ss_pred CCCcccee---------eccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCC---Cc--EEEE
Q 005646 212 NEEDAMFC---------SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GV--VRLW 277 (686)
Q Consensus 212 ~~~~l~~g---------~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~--I~vW 277 (686)
+|++++.. ..++.|.+|+...... ..+ ..+..++|+|||++||.++.+ +. |.+|
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNAR--------RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE--------EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCce--------EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 66665543 2367788888765321 112 468899999999999988754 33 6666
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
++.+++... +..+.. +
T Consensus 91 ~~~~g~~~~---------------------------------------------------------------l~~~~~-~ 106 (347)
T 2gop_A 91 DLETLSSKK---------------------------------------------------------------ILEAKN-I 106 (347)
T ss_dssp ETTTTEEEE---------------------------------------------------------------EEEESE-E
T ss_pred ECCCCceEE---------------------------------------------------------------EEcCCC-c
Confidence 766654211 111223 8
Q ss_pred eEEEeeCCC-EEEEEEC---------------------------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCE
Q 005646 358 LDLSWSKNN-YLLSASI---------------------------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~---------------------------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~ 409 (686)
..++|+|++ .|+.++. ...|.+||+.+++.+..+... .+..++|+| ++ +
T Consensus 107 ~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~sp-dg-~ 183 (347)
T 2gop_A 107 RSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHR-DK-I 183 (347)
T ss_dssp EEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEET-TE-E
T ss_pred cceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCC-Ce-E
Confidence 889999998 6776653 257999999998874444433 889999999 88 8
Q ss_pred EEEEEcCC-------cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecC--------CcEEEEeCCCCeeeeee
Q 005646 410 FISGSIDG-------KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM--------GDCRFYNVSDNHLELDA 474 (686)
Q Consensus 410 l~sgs~Dg-------~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~d--------g~i~iwd~~~~~~~~~~ 474 (686)
++++..++ ...||.+.+++...+..+ ..+..+ +|||+.|+.++.+ ..|++|| +++...
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~-- 256 (347)
T 2gop_A 184 VVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG-- 256 (347)
T ss_dssp EEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE--
T ss_pred EEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe--
Confidence 88776652 344554446665555544 455544 9999999887754 3688888 333221
Q ss_pred eEEeeccccCCCCCeEE-EEEeCCCCCeEEEEeCCCcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcE-
Q 005646 475 EICVHSKKKAPCKRITG-FQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNV- 538 (686)
Q Consensus 475 ~~~~~~~~~~~~~~I~~-l~fsp~~~~~l~~~s~D~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V- 538 (686)
....+...+.. +.|+ ++ ++++++.++.++|| ..+ .+.+++ .++++++.++..
T Consensus 257 ------l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~ 324 (347)
T 2gop_A 257 ------ILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLR 324 (347)
T ss_dssp ------SSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCC
T ss_pred ------ccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChH
Confidence 11233456775 8887 45 88888899999998 531 134555 677777777664
Q ss_pred EEEeCC
Q 005646 539 YMWNCI 544 (686)
Q Consensus 539 ~iWd~~ 544 (686)
.||.++
T Consensus 325 ~l~~~~ 330 (347)
T 2gop_A 325 ELFTWD 330 (347)
T ss_dssp EEEEES
T ss_pred HheEeC
Confidence 677665
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.48 E-value=5.1e-12 Score=145.97 Aligned_cols=230 Identities=10% Similarity=0.087 Sum_probs=157.8
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCC-----cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDG-----VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg-----~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
+|...+..++|||||++||.+..++ .|++||+.+++....
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~----------------------------------- 166 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD----------------------------------- 166 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------------------------------
Confidence 4556789999999999999876543 899999988873221
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCc----------------EEEEECCCC
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT----------------VRLWRVGND 385 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~----------------V~iWd~~~~ 385 (686)
.+. + ..+..++|+||| .|+.++.++. |++|++.++
T Consensus 167 --------------------------~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~ 218 (710)
T 2xdw_A 167 --------------------------VLE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD 218 (710)
T ss_dssp --------------------------EEE-E-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred --------------------------ccc-C-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence 011 1 125689999999 8888888766 999999887
Q ss_pred eee--eEee---CCCCeEEEEEeecCCCEEEEEEc-----CCcEEEEecCC------C--cEEEEeccCCcEEEEEEccC
Q 005646 386 HCL--RVFP---HSNYVTCVHFNPVDDNYFISGSI-----DGKVRIWAVLS------C--HVVDWVDIRQIVTAVCYRPD 447 (686)
Q Consensus 386 ~~~--~~~~---h~~~V~~v~fsp~~~~~l~sgs~-----Dg~V~iwd~~~------~--~~~~~~~~~~~V~~v~~spd 447 (686)
+.. ..+. |...+..+.|+| ++++|+.++. +..|++||+.+ + ....+..+...+.. .|+|+
T Consensus 219 ~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~d 296 (710)
T 2xdw_A 219 QSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNE 296 (710)
T ss_dssp GGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEE
T ss_pred cccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEecc
Confidence 632 2222 456788999999 9999888775 56899999986 5 34555555555554 58899
Q ss_pred CCEEEEEecCC----cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc--EEEEeCCc---
Q 005646 448 GQGGIVGSMMG----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ--VRILQGPN--- 518 (686)
Q Consensus 448 g~~l~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~--I~iwd~~~--- 518 (686)
|+.|+..+..+ .|.+||+.++.......+..+ .....+..+.|++ ++.++++...|+. |.+|+..+
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE----HEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC----CSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC----CCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE
Confidence 99888776543 599999987532100111111 0113578899986 6678888888875 55666521
Q ss_pred ------------ceeEcCCCCEEEEE-e---CCCcEEEEeCCCCC
Q 005646 519 ------------VIGKYKDGKHIVSA-G---EDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ------------~~~~~~dg~~l~sg-s---~Dg~V~iWd~~~~~ 547 (686)
.+.++++++.|+.. + ..++|++||+.+++
T Consensus 372 ~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 372 LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 13355677666533 2 45789999998765
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.48 E-value=1.6e-11 Score=127.67 Aligned_cols=251 Identities=7% Similarity=-0.042 Sum_probs=172.6
Q ss_pred eeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcce
Q 005646 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (686)
Q Consensus 219 g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~ 298 (686)
++.++.|.++|....... ...+....-.........|.+. ++++.++...++.|.+||..+++.+..+.
T Consensus 13 g~~~~~l~~~d~~t~~~~-~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--------- 81 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVE-NEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--------- 81 (328)
T ss_dssp TSCCBEEEEEETTTTEEE-CSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE---------
T ss_pred CCCCceEEEEECCCCEEh-hhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC---------
Confidence 345889999998754321 1111100001122346778774 45555666667999999998887443331
Q ss_pred EEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEE-CCCcE
Q 005646 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS-IDKTV 377 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s-~Dg~V 377 (686)
.......+++++++.|+.+. .++.|
T Consensus 82 ------------------------------------------------------~~~~p~~i~~~~~g~lyv~~~~~~~v 107 (328)
T 3dsm_A 82 ------------------------------------------------------GFTSPRYIHFLSDEKAYVTQIWDYRI 107 (328)
T ss_dssp ------------------------------------------------------CCSSEEEEEEEETTEEEEEEBSCSEE
T ss_pred ------------------------------------------------------CCCCCcEEEEeCCCeEEEEECCCCeE
Confidence 22456788998888555555 89999
Q ss_pred EEEECCCCeeeeEeeCCC------CeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE
Q 005646 378 RLWRVGNDHCLRVFPHSN------YVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (686)
Q Consensus 378 ~iWd~~~~~~~~~~~h~~------~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~ 450 (686)
.+||..+++....+.-.. ....+++ . ++.++++.. .++.|.+||+.+++++...........++++|+|++
T Consensus 108 ~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l 185 (328)
T 3dsm_A 108 FIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKM 185 (328)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEE
T ss_pred EEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCE
Confidence 999999999888777433 6677888 4 555555544 489999999999998877766666788999999987
Q ss_pred EEEEecC----------CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--
Q 005646 451 GIVGSMM----------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-- 518 (686)
Q Consensus 451 l~~gs~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-- 518 (686)
++++..+ +.|.++|..++++.... .+. .......++|+| +++.|.++.. .|.+||..+
T Consensus 186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~--~~~-----~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF--KFK-----LGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE--ECC-----TTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSS
T ss_pred EEEECCCccCCccccCCceEEEEECCCCeEEEEE--ecC-----CCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCc
Confidence 7776554 78999999888754321 111 123588999999 6677766654 888998532
Q ss_pred ---------------ceeEcC-CCCEEEEE----eCCCcEEEEeCCCCC
Q 005646 519 ---------------VIGKYK-DGKHIVSA----GEDSNVYMWNCIGHE 547 (686)
Q Consensus 519 ---------------~~~~~~-dg~~l~sg----s~Dg~V~iWd~~~~~ 547 (686)
.+++.| +++++++. ..++.|.+||.+ ++
T Consensus 256 ~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 256776 56666666 678999999987 54
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.47 E-value=1.5e-11 Score=125.65 Aligned_cols=226 Identities=10% Similarity=-0.005 Sum_probs=158.3
Q ss_pred eecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEE
Q 005646 245 EIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (686)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (686)
.+..+.....+++|+|+|+ +++++..++.|..|+..++ ..
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~------------------------------------- 62 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS------------------------------------- 62 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------------------------
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------------------------
Confidence 3444566788999999998 7888888999999998654 11
Q ss_pred eeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-----CCCCe
Q 005646 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYV 397 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V 397 (686)
.+..+...+.+++++++| ++++...++.|.+||..+++...... ....+
T Consensus 63 -------------------------~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 117 (296)
T 3e5z_A 63 -------------------------PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSP 117 (296)
T ss_dssp -------------------------EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCC
T ss_pred -------------------------EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCC
Confidence 122345678899999999 55555567899999998887654432 22456
Q ss_pred EEEEEeecCCCEEEEE----Ec-------------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcE
Q 005646 398 TCVHFNPVDDNYFISG----SI-------------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460 (686)
Q Consensus 398 ~~v~fsp~~~~~l~sg----s~-------------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i 460 (686)
+.++++| +++++++. +. .+.|..++.. ++..........+..++|+|+|+.+++.+.++.|
T Consensus 118 ~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i 195 (296)
T 3e5z_A 118 NDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNAT 195 (296)
T ss_dssp CCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEE
T ss_pred CCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeE
Confidence 7899999 89988873 31 3456666665 6665556666778999999999999777788999
Q ss_pred EEEeCC-CCee-eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-------------cceeE-cC
Q 005646 461 RFYNVS-DNHL-ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------------NVIGK-YK 524 (686)
Q Consensus 461 ~iwd~~-~~~~-~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-------------~~~~~-~~ 524 (686)
++|++. ++.+ ..... . ..+...+.++++.+ ++.++++. ++.|.+|+.. +.+++ .+
T Consensus 196 ~~~~~~~~g~~~~~~~~--~----~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~~~~~~f~~~ 266 (296)
T 3e5z_A 196 HRYCLNARGETEYQGVH--F----TVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGDELGRVLTPQTTSNLCFGGP 266 (296)
T ss_dssp EEEEECSSSCEEEEEEE--E----CCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSCEEEEEECSSCCCEEEEEST
T ss_pred EEEEECCCCcCcCCCeE--e----eCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCCEEEEEECCCCceeEEEECC
Confidence 999997 4443 11111 1 11334567899999 66655555 8889999753 33566 47
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 005646 525 DGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 525 dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+++.|++++.++ +.-++..+.
T Consensus 267 d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 267 EGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp TSCEEEEEETTE-EEEEECSCC
T ss_pred CCCEEEEEcCCe-EEEEEcccc
Confidence 888898888763 444455443
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.47 E-value=5.1e-12 Score=131.53 Aligned_cols=167 Identities=13% Similarity=0.137 Sum_probs=119.8
Q ss_pred cCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCe-eeeEee----------CCCCeEEEEEeecCCCEEEEEE-cCCc
Q 005646 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-CLRVFP----------HSNYVTCVHFNPVDDNYFISGS-IDGK 418 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~-~~~~~~----------h~~~V~~v~fsp~~~~~l~sgs-~Dg~ 418 (686)
++......++++++| ++++...++.|++||..... .+..+. +-.....|+|+|.++.++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 344578899999999 77777788999999986542 555552 3346899999985677777776 6999
Q ss_pred EEEEecCCCcEEEEecc-----------CCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCC
Q 005646 419 VRIWAVLSCHVVDWVDI-----------RQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (686)
Q Consensus 419 V~iwd~~~~~~~~~~~~-----------~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 486 (686)
|++|| .++..+..... -..+..++++|+ |+++++...++.|++||..++++..... ...+.
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~------~~~~~ 240 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK------HASFG 240 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC------CTTTT
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe------ccccC
Confidence 99999 55666544432 123889999998 7777777789999999998666543211 12344
Q ss_pred CCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
..+.+++|+| ..++.. +|+..++...+..|++|++.+++
T Consensus 241 ~~~~~~~~~p---g~~~~~-------------------~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 241 RNVFAISYIP---GFLFAV-------------------NGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp TCEEEEEEET---TEEEEE-------------------ECCCCTTCSCCCCEEEEETTTCC
T ss_pred CCcceeeecC---CEEEEe-------------------CCCEEeccCCCcEEEEEEcCCCe
Confidence 6688899988 233333 45555566677899999988765
No 182
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.47 E-value=5.8e-12 Score=132.95 Aligned_cols=231 Identities=10% Similarity=0.060 Sum_probs=151.3
Q ss_pred EEEeeCCC-EEEEEE----------CCCcEEEEECCCCeeeeEee-C------CCCeEEEEEeecCCCEEEEEEc--CCc
Q 005646 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFP-H------SNYVTCVHFNPVDDNYFISGSI--DGK 418 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s----------~Dg~V~iWd~~~~~~~~~~~-h------~~~V~~v~fsp~~~~~l~sgs~--Dg~ 418 (686)
.++|+|++ +|+++. .+++|.+||+.+.+.+..+. . ......++|+| ++++|+++.. +++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCe
Confidence 89999999 777765 36789999999998888775 2 35677899999 9999998875 589
Q ss_pred EEEEecCCCcEEEE-eccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 419 VRIWAVLSCHVVDW-VDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 419 V~iwd~~~~~~~~~-~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
|.+||+.+++++.. +..... ..+.+.|++ ..+++.+.||.+.+|++.. ++.... ............+ ..+.+.
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~--~~~~~~~~~~~~~-~~~~~~ 208 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ--SRSKQMFSVKDDP-IFIAPA 208 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE--EECCCCSCTTTSC-BCSCCE
T ss_pred EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee--ccccceEcCCCCc-eEEEec
Confidence 99999999988876 665443 335677876 6778888999999999865 433211 0000001111111 122335
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCc---------------------------ceeEcCCCCEEEEEeC-----------CCc
Q 005646 496 PQDSSKVMVSCADSQVRILQGPN---------------------------VIGKYKDGKHIVSAGE-----------DSN 537 (686)
Q Consensus 496 p~~~~~l~~~s~D~~I~iwd~~~---------------------------~~~~~~dg~~l~sgs~-----------Dg~ 537 (686)
+ ++..++..+.++.|.++|... .+++++++++++.+.. .+.
T Consensus 209 ~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 209 L-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp E-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred c-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 5 445666666778888888531 1578889888877653 348
Q ss_pred EEEEeCCCCCCCCccccccccccccccCCcEEEecCCCC----------cCCCCCCC--CcccccC--CCCCcccccCCC
Q 005646 538 VYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGL----------KCGNAEKE--PQLHVSD--DDSPENLAFAPA 603 (686)
Q Consensus 538 V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~----------~~~~~~~g--~~l~~~~--~~~~~~~~~spd 603 (686)
|.+||+.+.+.. .++.... ...++++++|. .+||..++ +.+..+. +.....+.++||
T Consensus 288 v~viD~~t~~~v--------~~i~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 288 IWVMDTKTKQRV--------ARIPGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp EEEEETTTTEEE--------EEEECTT-CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred EEEEECCCCcEE--------EEEecCC-eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 999999887622 1111111 23444444432 56777787 7666642 344556677777
Q ss_pred c
Q 005646 604 R 604 (686)
Q Consensus 604 ~ 604 (686)
+
T Consensus 359 G 359 (361)
T 2oiz_A 359 G 359 (361)
T ss_dssp S
T ss_pred C
Confidence 4
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.41 E-value=9.3e-12 Score=129.40 Aligned_cols=185 Identities=10% Similarity=0.108 Sum_probs=134.9
Q ss_pred EeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEe-eCCCCeEEEEEeecCCCEEEEEEcC----CcEEEE
Q 005646 349 EFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSID----GKVRIW 422 (686)
Q Consensus 349 ~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~~~V~~v~fsp~~~~~l~sgs~D----g~V~iw 422 (686)
.+..+...+.+++|++++ +++++..++.|.+||..+++..... .+...+.+++++| +++++++...+ +.|.+|
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEE
Confidence 344566677899999999 6667788999999999988776655 3678899999999 88888877766 689999
Q ss_pred ecCCCcEEEEe---ccCCcEEEEEEccCCCEEEEEec------CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 423 AVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 423 d~~~~~~~~~~---~~~~~V~~v~~spdg~~l~~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
|..++...... .....+..++++|+|+++++... .+.|..||..+++..... . ....+.+++
T Consensus 118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~-----~~~~~~~i~ 188 (333)
T 2dg1_A 118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII----Q-----NISVANGIA 188 (333)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE----E-----EESSEEEEE
T ss_pred eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee----c-----CCCcccceE
Confidence 99888765332 23456899999999987776653 356777776554432211 0 113478899
Q ss_pred EeCCCCCeE-EEEeCCCcEEEEeCCc-----------------------ceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 494 FLPQDSSKV-MVSCADSQVRILQGPN-----------------------VIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 494 fsp~~~~~l-~~~s~D~~I~iwd~~~-----------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
|+| +++.| ++...++.|.+|+..+ .+++.++|+++++...++.|++|+.+
T Consensus 189 ~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 189 LST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp ECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 999 66644 5556678899998631 13455688888888888999999974
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.41 E-value=3.9e-11 Score=122.56 Aligned_cols=226 Identities=8% Similarity=-0.039 Sum_probs=153.6
Q ss_pred cceeeecCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
+...+.++++ .++++..++.|.+|+.... . +.+..+...+.+++|+++|+++++...++.|.+||..+++
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~--------~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L--------SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E--------EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred cCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e--------EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence 4567778887 6777888999999987654 1 2344567789999999999988887777899999987765
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEec-cCCCCeeEEEe
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSW 362 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~ 362 (686)
...... ... .....+.++++
T Consensus 102 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~~i~~ 122 (296)
T 3e5z_A 102 WESIAD-----------------------------------------------------------SFEGKKLNSPNDVCL 122 (296)
T ss_dssp EEEEEC-----------------------------------------------------------EETTEECCCCCCEEE
T ss_pred EEEEee-----------------------------------------------------------ccCCCCCCCCCCEEE
Confidence 221110 000 01235678999
Q ss_pred eCCC-EEEE----EEC-------------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 363 SKNN-YLLS----ASI-------------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 363 s~~~-~L~s----~s~-------------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
+|+| ++++ ++. .+.|..++.. ++......+......++|+| +++++++.+.++.|++||+
T Consensus 123 d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~ 200 (296)
T 3e5z_A 123 APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCL 200 (296)
T ss_dssp CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEE
Confidence 9999 5555 221 2345555554 44444444677889999999 8988877778899999999
Q ss_pred C-CCcE---EEEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 425 L-SCHV---VDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 425 ~-~~~~---~~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
. ++.+ .... .....+..++++++|+++++. ++.|.+||... +.... ...+.. +++++|...++
T Consensus 201 ~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-~~~~~--------~~~~~~-~~~~~f~~~d~ 268 (296)
T 3e5z_A 201 NARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-DELGR--------VLTPQT-TSNLCFGGPEG 268 (296)
T ss_dssp CSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-CEEEE--------EECSSC-CCEEEEESTTS
T ss_pred CCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-CEEEE--------EECCCC-ceeEEEECCCC
Confidence 7 5554 2222 234456789999999866655 88999999873 32211 111224 88999963377
Q ss_pred CeEEEEeCCCcEE
Q 005646 500 SKVMVSCADSQVR 512 (686)
Q Consensus 500 ~~l~~~s~D~~I~ 512 (686)
..|++++.++..+
T Consensus 269 ~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 269 RTLYMTVSTEFWS 281 (296)
T ss_dssp CEEEEEETTEEEE
T ss_pred CEEEEEcCCeEEE
Confidence 8888888765433
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.40 E-value=4.9e-11 Score=124.06 Aligned_cols=232 Identities=8% Similarity=-0.003 Sum_probs=161.7
Q ss_pred cCCCcc-ceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 211 LNEEDA-MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 211 ~~~~~l-~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
.+++.+ ++...++.|.++|...... ..++. .......|++++++++.++...++.|.+||..+++....+.
T Consensus 51 ~~~~~lyv~~~~~~~v~viD~~t~~~-------~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 51 IRDGIGWIVVNNSHVIFAIDINTFKE-------VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp EETTEEEEEEGGGTEEEEEETTTCCE-------EEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred EECCEEEEEEcCCCEEEEEECcccEE-------EEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 344444 4455678999999865432 11222 34678899999999555554488999999998887554443
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~ 369 (686)
.... .++......+++ .++.|+
T Consensus 123 ~g~~---------------------------------------------------------~~~~~~p~~i~~-~~~~ly 144 (328)
T 3dsm_A 123 CPDM---------------------------------------------------------DMESGSTEQMVQ-YGKYVY 144 (328)
T ss_dssp CTTC---------------------------------------------------------CTTTCBCCCEEE-ETTEEE
T ss_pred cCCc---------------------------------------------------------cccCCCcceEEE-ECCEEE
Confidence 2110 011123345666 445555
Q ss_pred EEE--CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC----------CcEEEEecCCCcEEEEecc--
Q 005646 370 SAS--IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID----------GKVRIWAVLSCHVVDWVDI-- 435 (686)
Q Consensus 370 s~s--~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D----------g~V~iwd~~~~~~~~~~~~-- 435 (686)
.+. .+++|.++|+.+++.+..+........++++| ++++++++..+ +.|.++|..++++......
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~ 223 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL 223 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC
Confidence 554 48999999999999988887656678899999 88877776655 7899999999988765544
Q ss_pred CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE----eCCCcE
Q 005646 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS----CADSQV 511 (686)
Q Consensus 436 ~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~----s~D~~I 511 (686)
...+..++|+|+++.++++.. .|.+||+.++++.....+ ........+++++|+++.++++. ..++.|
T Consensus 224 g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~------~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 224 GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFL------EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSB------CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeee------cCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 346899999999999988765 899999988765321100 11135689999999666666766 678889
Q ss_pred EEEeCC
Q 005646 512 RILQGP 517 (686)
Q Consensus 512 ~iwd~~ 517 (686)
.+||..
T Consensus 296 ~v~d~~ 301 (328)
T 3dsm_A 296 YRYSPQ 301 (328)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 988853
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.39 E-value=4.2e-10 Score=125.31 Aligned_cols=259 Identities=10% Similarity=0.087 Sum_probs=176.5
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEee--cCeeeeeecc
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV--EDERLTEVDI 290 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~--~~~~~~~~~~ 290 (686)
+..+++...++.|.|+|..+... + .++. ....+..+.|+|||++|++++.|+.|.+||+. +++.+..+
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v-~------~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i-- 236 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEI-K------TVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI-- 236 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCE-E------EEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE--
T ss_pred ceEEEEeCCCCeEEEEECCCCeE-E------EEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE--
Confidence 34566777889999999865432 1 1222 12356789999999999999999999999985 54432222
Q ss_pred CCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee----CCC
Q 005646 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS----KNN 366 (686)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s----~~~ 366 (686)
... .....++|+ |+|
T Consensus 237 ------------------------------------------------------------~~G-~~P~~ia~s~~~~pDG 255 (567)
T 1qks_A 237 ------------------------------------------------------------KIG-SEARSIETSKMEGWED 255 (567)
T ss_dssp ------------------------------------------------------------ECC-SEEEEEEECCSTTCTT
T ss_pred ------------------------------------------------------------ecC-CCCceeEEccccCCCC
Confidence 111 234689999 688
Q ss_pred -EEEEEE-CCCcEEEEECCCCeeeeEeeC------------CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE--
Q 005646 367 -YLLSAS-IDKTVRLWRVGNDHCLRVFPH------------SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-- 430 (686)
Q Consensus 367 -~L~s~s-~Dg~V~iWd~~~~~~~~~~~h------------~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-- 430 (686)
+++++. .+++|.++|..+.+.++.+.- ...+..+.+++....+++....+|+|.++|..+....
T Consensus 256 k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v 335 (567)
T 1qks_A 256 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT 335 (567)
T ss_dssp TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee
Confidence 655554 569999999999998887651 1267889888843445555566799999999876432
Q ss_pred EEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe-CC
Q 005646 431 DWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-AD 508 (686)
Q Consensus 431 ~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s-~D 508 (686)
..+........+.|+|+|++++++. .++.|.++|+.++++..... . +....|.++-..+ ++|+.+...++.. .+
T Consensus 336 ~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~--v-gg~~Phpg~g~~~-~~p~~g~v~~t~~~g~ 411 (567)
T 1qks_A 336 TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED--T-GGQTPHPGRGANF-VHPTFGPVWATSHMGD 411 (567)
T ss_dssp EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE--C-SSSSBCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred eeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe--c-cCcCCCCccceee-ECCCCCcEEEeCCCCC
Confidence 3344555678899999999987765 57899999999988654321 1 0123333222222 5773344444433 56
Q ss_pred CcEEEEeCCc----------------------ceeEcCCCCEEEEEeC-------CCcEEEEeCCCC
Q 005646 509 SQVRILQGPN----------------------VIGKYKDGKHIVSAGE-------DSNVYMWNCIGH 546 (686)
Q Consensus 509 ~~I~iwd~~~----------------------~~~~~~dg~~l~sgs~-------Dg~V~iWd~~~~ 546 (686)
+.|.++|..+ .+..+|++++|.+... .+.|.|+|+.+.
T Consensus 412 ~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 412 DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 8899998543 1456789999998763 458999999875
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.38 E-value=4.3e-11 Score=124.96 Aligned_cols=139 Identities=12% Similarity=0.148 Sum_probs=93.2
Q ss_pred CeeEEEeeCCCEEEEEECCC-------cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC--------CcEE
Q 005646 356 EILDLSWSKNNYLLSASIDK-------TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID--------GKVR 420 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg-------~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D--------g~V~ 420 (686)
.+..++|+|+++++++..+. ...||.+.+++......+ ..+..+ +| ++++|+.++.+ ..|.
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~ 247 (347)
T 2gop_A 172 RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLY 247 (347)
T ss_dssp TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEE
T ss_pred CcccccCCCCeEEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEE
Confidence 67889999999555555442 445555546655444445 555554 89 89888877754 3688
Q ss_pred EEecCCCcEEEEec-cCCcEEE-EEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCC
Q 005646 421 IWAVLSCHVVDWVD-IRQIVTA-VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (686)
Q Consensus 421 iwd~~~~~~~~~~~-~~~~V~~-v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~ 498 (686)
+|| +++...... +...+.. +.|+ || .+++++.++.++|| +.+++.. .+. .+...|.++.|+|
T Consensus 248 ~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-----~~~----~~~~~v~~~~~s~-- 311 (347)
T 2gop_A 248 IYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-----PIA----KGRHWIMGFDVDE-- 311 (347)
T ss_dssp EEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-----EEE----CSSSEEEEEEESS--
T ss_pred EEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-----EEe----cCCCeEEeeeeeC--
Confidence 888 666554443 4567776 8999 98 88899999999999 8744321 111 1245689999998
Q ss_pred CCeEEEEeCCCcE-EEEe
Q 005646 499 SSKVMVSCADSQV-RILQ 515 (686)
Q Consensus 499 ~~~l~~~s~D~~I-~iwd 515 (686)
..+++++.++.. ++|.
T Consensus 312 -~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 312 -IVVYLKETATRLRELFT 328 (347)
T ss_dssp -SEEEEEECSSSCCEEEE
T ss_pred -cEEEEEcCCCChHHheE
Confidence 577777766654 5654
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.38 E-value=6.6e-11 Score=119.79 Aligned_cols=216 Identities=9% Similarity=0.018 Sum_probs=154.1
Q ss_pred CCccceeeccceEEEEEcCCccccccccccCceecccC-CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 213 ~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
++.+++++.++.|.+||....... ..+..|. ..+.++.++|+|++|+ +.++.|+.||. +++.+..+..
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~-------w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~- 73 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIV-------WEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA- 73 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEE-------EEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC-
T ss_pred CcEEEeeCCCCEEEEEECCCCeEE-------EEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC-
Confidence 467888999999999987544321 2233344 4688999999999988 34778999998 7764443321
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS 370 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s 370 (686)
++...+.++.+.++| .|++
T Consensus 74 ------------------------------------------------------------~~~~~~~~~~~~~dG~~lv~ 93 (276)
T 3no2_A 74 ------------------------------------------------------------PAGCEMQTARILPDGNALVA 93 (276)
T ss_dssp ------------------------------------------------------------CTTCEEEEEEECTTSCEEEE
T ss_pred ------------------------------------------------------------CCCccccccEECCCCCEEEE
Confidence 112356788889999 7777
Q ss_pred EEC-CCcEEEEECCCCeeeeEeeC-------CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEE
Q 005646 371 ASI-DKTVRLWRVGNDHCLRVFPH-------SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV 442 (686)
Q Consensus 371 ~s~-Dg~V~iWd~~~~~~~~~~~h-------~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v 442 (686)
.+. ++.|..+|. +++.+..+.. ......+++.+ +++++++...++.|..||.. ++.+........+.++
T Consensus 94 ~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~ 170 (276)
T 3no2_A 94 WCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSS 170 (276)
T ss_dssp EESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEE
T ss_pred ecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccce
Confidence 776 777877775 6777766641 12345567788 99999999999999999998 8887666655667788
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
...++|+.+++++.++.|..+|..+++...... ...........+.+++..+ ++..+++.
T Consensus 171 ~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~l~~~~~~~~~~-~G~i~v~~ 230 (276)
T 3no2_A 171 AFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN--ANDIEGVQLFFVAQLFPLQ-NGGLYICN 230 (276)
T ss_dssp EECTTSCEEEECBTTSEEEEECTTTCCEEEEEE--GGGSBSCCCSEEEEEEECT-TSCEEEEE
T ss_pred eEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec--CCCCCCccccccccceEcC-CCCEEEEe
Confidence 889999999998888899999999887755332 1110111234477888888 55655554
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.38 E-value=5.2e-11 Score=119.48 Aligned_cols=234 Identities=8% Similarity=-0.075 Sum_probs=155.1
Q ss_pred eeeecCCCccc-eeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeee
Q 005646 207 ERVRLNEEDAM-FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (686)
Q Consensus 207 ~~~s~~~~~l~-~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~ 285 (686)
..+.+++...+ +...++.|.+|+........ . ...+...+.+|+++++|+++++.. ++.|.+||.......
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~----~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---L----PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----EE---C----CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccce---E----eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 34556666555 44677889999764432111 0 112345688999999998666665 889999987543210
Q ss_pred eeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC
Q 005646 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (686)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 365 (686)
.+. ......+.++++.++
T Consensus 101 -~~~-------------------------------------------------------------~~~~~~p~~i~~~~~ 118 (270)
T 1rwi_B 101 -VLP-------------------------------------------------------------FDGLNYPEGLAVDTQ 118 (270)
T ss_dssp -ECC-------------------------------------------------------------CCSCSSEEEEEECTT
T ss_pred -eee-------------------------------------------------------------cCCcCCCcceEECCC
Confidence 000 012245789999999
Q ss_pred C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec-cCCcEEEE
Q 005646 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-IRQIVTAV 442 (686)
Q Consensus 366 ~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~~~~V~~v 442 (686)
+ ++++...++.|.+|+..+........ ....+.+|+++| +++++++...++.|.+||..+........ ....+..+
T Consensus 119 g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i 197 (270)
T 1rwi_B 119 GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGI 197 (270)
T ss_dssp CCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEE
T ss_pred CCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEE
Confidence 8 56666678899999876554432222 345688999999 88888777778899999998776554322 22668999
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeE
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK 522 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~ 522 (686)
+++++|..+++...++.|.+|+..+..... ....+...+.++++.+
T Consensus 198 ~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~p~~i~~~~-------------------------- 243 (270)
T 1rwi_B 198 AVDEAGTVYVTEHNTNQVVKLLAGSTTSTV--------LPFTGLNTPLAVAVDS-------------------------- 243 (270)
T ss_dssp EECTTCCEEEEETTTSCEEEECTTCSCCEE--------CCCCSCSCEEEEEECT--------------------------
T ss_pred EECCCCCEEEEECCCCcEEEEcCCCCccee--------eccCCCCCceeEEECC--------------------------
Confidence 999999777777778899999987654321 0111234578888888
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 523 YKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|+++++...++.|+++++...+
T Consensus 244 --~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 244 --DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp --TCCEEEEEGGGTEEEEECCCGGG
T ss_pred --CCCEEEEECCCCEEEEEcCCCcc
Confidence 66666666777777777776543
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.35 E-value=1.8e-09 Score=114.16 Aligned_cols=254 Identities=13% Similarity=0.044 Sum_probs=166.8
Q ss_pred eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------CCCcEEEEEeecCeeeeeeccCCC
Q 005646 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
.|.++|..+... . .++.....+ .++|+|||++|+.+. .++.|.+||..+.+.+..+.....
T Consensus 48 ~v~v~D~~t~~~-~------~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~ 118 (373)
T 2mad_H 48 QQWVLDAGSGSI-L------GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA 118 (373)
T ss_pred EEEEEECCCCeE-E------EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc
Confidence 788998765432 1 233333444 999999999999886 367899999988776555432200
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s 372 (686)
.+.. +...-..++|+|+| +|+.+.
T Consensus 119 -----------------------------------------------------~~~~--~g~~p~~~~~spDG~~l~v~n 143 (373)
T 2mad_H 119 -----------------------------------------------------PRFD--VGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred -----------------------------------------------------cccc--cCCCccceEECCCCCEEEEEe
Confidence 0000 11233588999999 777776
Q ss_pred C--CCcEEEEECCCCeeeeE-eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec------cCCc-EEEE
Q 005646 373 I--DKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD------IRQI-VTAV 442 (686)
Q Consensus 373 ~--Dg~V~iWd~~~~~~~~~-~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~------~~~~-V~~v 442 (686)
. +..|.++| .+++.+.. +.... |+.+.|.....+++.+.||++.++|. +++.+.... ...+ ....
T Consensus 144 ~~~~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~ 218 (373)
T 2mad_H 144 FAAGPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQP 218 (373)
T ss_pred cCCCCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecc
Confidence 4 57899999 99998888 66443 35566745567788889999999999 887663221 1112 2335
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc----cCCCCCeEEEEEeCCCCCeEEEEeC----------C
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK----KAPCKRITGFQFLPQDSSKVMVSCA----------D 508 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~I~~l~fsp~~~~~l~~~s~----------D 508 (686)
.+.+++..++..+..+.+.+.|+..........+.+.... .........+.++| +++.+.++.. .
T Consensus 219 ~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~ 297 (373)
T 2mad_H 219 AQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAA 297 (373)
T ss_pred eeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCC
Confidence 6777766655556788999999976543322222211100 00112244478898 6666666543 3
Q ss_pred CcEEEEeCCc--------------ceeEcCCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005646 509 SQVRILQGPN--------------VIGKYKDGK-HIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~~--------------~~~~~~dg~-~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
+.|.++|..+ .+.+++||+ +++++. .++.|.+||..+++
T Consensus 298 ~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 5799998653 477889999 788877 58999999999876
No 191
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.33 E-value=8.5e-11 Score=136.37 Aligned_cols=265 Identities=13% Similarity=0.104 Sum_probs=164.7
Q ss_pred eeecCCCccceeeccce---EEEEEcCCc---cccccccccCcee-cccCCceEEEEEeeCCCEEEEEeCC-----CcEE
Q 005646 208 RVRLNEEDAMFCSKVQR---VKVYHCKKR---SKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDD-----GVVR 275 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~---v~vw~~~~~---~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~D-----g~I~ 275 (686)
...++|++++....++. ..+|..... ..+...+.....+ .+|...+..++|||||++||.++.+ ..|+
T Consensus 113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 33477887766554432 556654322 1121222111111 2355578999999999999987654 4699
Q ss_pred EEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCC
Q 005646 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (686)
Q Consensus 276 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 355 (686)
+||+.+++.+... .+..
T Consensus 193 v~dl~tg~~~~~~---------------------------------------------------------------~~~~ 209 (741)
T 1yr2_A 193 FVGVADGKPLADE---------------------------------------------------------------LKWV 209 (741)
T ss_dssp EEETTTCCEEEEE---------------------------------------------------------------EEEE
T ss_pred EEECCCCCCCCcc---------------------------------------------------------------CCCc
Confidence 9999887632110 0111
Q ss_pred CeeEEEeeCCCEEEEEECCCc--------------EEEEECCCCee--eeEee---CCCCeEEEEEeecCCCEEEEEEcC
Q 005646 356 EILDLSWSKNNYLLSASIDKT--------------VRLWRVGNDHC--LRVFP---HSNYVTCVHFNPVDDNYFISGSID 416 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~--------------V~iWd~~~~~~--~~~~~---h~~~V~~v~fsp~~~~~l~sgs~D 416 (686)
.+..++|+|+..|+.++.|+. |++|++.+++. ...+. +...+..+.|+| ++++|+..+.+
T Consensus 210 ~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~ 288 (741)
T 1yr2_A 210 KFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSE 288 (741)
T ss_dssp ESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEEC
T ss_pred eeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEc
Confidence 234678888875666665544 89999987752 22333 334689999999 99988888765
Q ss_pred C-----cEEEEecCCC--c-EEEEeccCCcEEEEEEccCCCEEEEEecC----CcEEEEeCCCCe--eeeeeeEEeeccc
Q 005646 417 G-----KVRIWAVLSC--H-VVDWVDIRQIVTAVCYRPDGQGGIVGSMM----GDCRFYNVSDNH--LELDAEICVHSKK 482 (686)
Q Consensus 417 g-----~V~iwd~~~~--~-~~~~~~~~~~V~~v~~spdg~~l~~gs~d----g~i~iwd~~~~~--~~~~~~~~~~~~~ 482 (686)
+ .|++||+.++ + ...+......+.... +|+|+.|+..+.+ +.|.+||+.+.. ... + +
T Consensus 289 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~---l-~---- 359 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT---V-V---- 359 (741)
T ss_dssp TTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE---E-E----
T ss_pred cCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEE---E-e----
Confidence 4 8999999887 5 555555555555543 4899998887764 459999987642 111 1 1
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE--eCC---------------cceeEcCCCCEEEE-E---eCCCcEEEE
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRIL--QGP---------------NVIGKYKDGKHIVS-A---GEDSNVYMW 541 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw--d~~---------------~~~~~~~dg~~l~s-g---s~Dg~V~iW 541 (686)
..+...+.++.+. ++.++++...|+..+|| +.. ..+.++++++.|+. . ...++|++|
T Consensus 360 ~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~ 437 (741)
T 1yr2_A 360 PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLAL 437 (741)
T ss_dssp CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEE
T ss_pred cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEE
Confidence 1122346677776 45677888888877766 321 11345567775552 2 245789999
Q ss_pred eCCCCC
Q 005646 542 NCIGHE 547 (686)
Q Consensus 542 d~~~~~ 547 (686)
|+.+++
T Consensus 438 d~~tg~ 443 (741)
T 1yr2_A 438 DPATAK 443 (741)
T ss_dssp ETTTTE
T ss_pred ECCCCc
Confidence 998765
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.31 E-value=2.3e-10 Score=132.10 Aligned_cols=235 Identities=7% Similarity=-0.060 Sum_probs=154.7
Q ss_pred eeeecCCCccceeeccc-----eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCc--------
Q 005646 207 ERVRLNEEDAMFCSKVQ-----RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV-------- 273 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~-----~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~-------- 273 (686)
.++++++++++.+...+ .|++|++....... . .+. ...+..++|+|||+.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~--~----~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--D----VLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--E----EEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc--c----ccc--CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 57889999888766544 89999987643211 0 111 122678999999999999988766
Q ss_pred --------EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCC
Q 005646 274 --------VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (686)
Q Consensus 274 --------I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (686)
|++|++.+++... .
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~----------------------------------------------------------~ 223 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSED----------------------------------------------------------I 223 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGC----------------------------------------------------------E
T ss_pred cccCCCCEEEEEECCCCcccc----------------------------------------------------------e
Confidence 8888876543100 0
Q ss_pred CeEEeccCCCCeeEEEeeCCC-EEEEEEC-----CCcEEEEECCC------Ce-eeeEee-CCCCeEEEEEeecCCCEEE
Q 005646 346 PLHEFHGHSGEILDLSWSKNN-YLLSASI-----DKTVRLWRVGN------DH-CLRVFP-HSNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 346 ~~~~l~~h~~~V~~l~~s~~~-~L~s~s~-----Dg~V~iWd~~~------~~-~~~~~~-h~~~V~~v~fsp~~~~~l~ 411 (686)
.+.....|...+..+.|+|+| +|+.++. +..|.+||+.+ +. ....+. +...+.. .|+| +++.|+
T Consensus 224 ~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~-dg~~l~ 301 (710)
T 2xdw_A 224 LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTN-EGTVFT 301 (710)
T ss_dssp EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEE-ETTEEE
T ss_pred EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEec-cCCEEE
Confidence 011112355667899999999 6666554 56899999986 42 334443 6666655 4888 777776
Q ss_pred EEEcC----CcEEEEecCCCc---EEEEeccCC--cEEEEEEccCCCEEEEEecCCc--EEEEeCCCCeeeeeeeEEeec
Q 005646 412 SGSID----GKVRIWAVLSCH---VVDWVDIRQ--IVTAVCYRPDGQGGIVGSMMGD--CRFYNVSDNHLELDAEICVHS 480 (686)
Q Consensus 412 sgs~D----g~V~iwd~~~~~---~~~~~~~~~--~V~~v~~spdg~~l~~gs~dg~--i~iwd~~~~~~~~~~~~~~~~ 480 (686)
..+.. +.|.+||+.++. ...+..+.. .+..++|++++.++++...++. |++|++.+++.... +
T Consensus 302 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~--l---- 375 (710)
T 2xdw_A 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKI--F---- 375 (710)
T ss_dssp EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEE--E----
T ss_pred EEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEe--c----
Confidence 66543 369999998764 244555544 6888999988888888888885 56677755543211 1
Q ss_pred cccCCCCCeEEEEEeCCCCCeEEEE-e---CCCcEEEEeCCc
Q 005646 481 KKKAPCKRITGFQFLPQDSSKVMVS-C---ADSQVRILQGPN 518 (686)
Q Consensus 481 ~~~~~~~~I~~l~fsp~~~~~l~~~-s---~D~~I~iwd~~~ 518 (686)
..+...+..+.++| ++..++.. + ..++|.+||..+
T Consensus 376 --~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 376 --PLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp --CCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTS
T ss_pred --CCCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCC
Confidence 12345688899999 55555433 3 347899999754
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.31 E-value=7.6e-10 Score=113.55 Aligned_cols=233 Identities=12% Similarity=0.131 Sum_probs=158.4
Q ss_pred cCCceEEEEEeeCCCEEEE-------EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeE
Q 005646 249 HDGSILTMKFSPDGQYLAS-------AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Las-------gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (686)
.-....+++|+++|+++++ +..++.|.+||..+++... +..
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~------------------------------- 63 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICK------------------------------- 63 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EEC-------------------------------
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEe-------------------------------
Confidence 3446789999999988877 5678899999977665211 000
Q ss_pred EEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCC-CEEEEEECCCcEEEEECCCCeeeeE-ee-----CC
Q 005646 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRV-FP-----HS 394 (686)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~L~s~s~Dg~V~iWd~~~~~~~~~-~~-----h~ 394 (686)
....++...+.+++++++ +.|+.++....|.+||.. ++.... .. ..
T Consensus 64 --------------------------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 116 (314)
T 1pjx_A 64 --------------------------PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRM 116 (314)
T ss_dssp --------------------------CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBC
T ss_pred --------------------------cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccc
Confidence 001124456889999999 766666666689999998 665443 22 12
Q ss_pred CCeEEEEEeecCCCEEEEEEcC---------------CcEEEEecCCCcEEEEeccCCcEEEEEEc----cCCCEEEEE-
Q 005646 395 NYVTCVHFNPVDDNYFISGSID---------------GKVRIWAVLSCHVVDWVDIRQIVTAVCYR----PDGQGGIVG- 454 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~D---------------g~V~iwd~~~~~~~~~~~~~~~V~~v~~s----pdg~~l~~g- 454 (686)
..+.+++++| +++++++...+ +.|..||.. ++.............++++ |+|+.++++
T Consensus 117 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 117 QGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp BCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEE
Confidence 4588999999 88888877655 567778776 6555444444557889999 999766555
Q ss_pred ecCCcEEEEeCC-CCeeeeeeeEEeeccccCCC-CCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc--------------
Q 005646 455 SMMGDCRFYNVS-DNHLELDAEICVHSKKKAPC-KRITGFQFLPQDSSKVMVSCADSQVRILQGPN-------------- 518 (686)
Q Consensus 455 s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~-~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-------------- 518 (686)
..++.|.+||+. +++........ ....+. ..+.++++.+ ++.++++...++.|.+||..+
T Consensus 195 ~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 270 (314)
T 1pjx_A 195 TPTKKLWSYDIKGPAKIENKKVWG---HIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKP 270 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEE---ECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCE
T ss_pred CCCCeEEEEECCCCCccccceEEE---ECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCc
Confidence 567899999986 34332111111 111222 4578899999 677777777889999998652
Q ss_pred -ceeEcCCCCEEE-EEeCCCcEEEEeCCCC
Q 005646 519 -VIGKYKDGKHIV-SAGEDSNVYMWNCIGH 546 (686)
Q Consensus 519 -~~~~~~dg~~l~-sgs~Dg~V~iWd~~~~ 546 (686)
.+++.++|++|. +...++.|..|++...
T Consensus 271 ~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 271 SNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 255678998554 4556788999998754
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.30 E-value=4e-09 Score=106.95 Aligned_cols=255 Identities=8% Similarity=0.043 Sum_probs=167.5
Q ss_pred eecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005646 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV 288 (686)
Q Consensus 209 ~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~ 288 (686)
+.+++...++...++.|.+|+.. .. +... .+..+...+.+|+++++|.++++...++.|..|+.. ++ ...+
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~ 92 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLD-GK--ITEY----PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IKEY 92 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-CC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEE
T ss_pred ECCCCCEEEEecCCCcEEEEcCC-CC--eEEe----cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEE
Confidence 34555555554457889999865 21 1111 112245679999999999988887778889998864 22 1111
Q ss_pred ccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-E
Q 005646 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y 367 (686)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~ 367 (686)
. +..+...+..+++.+++ +
T Consensus 93 ~------------------------------------------------------------~~~~~~~~~~i~~~~~g~l 112 (299)
T 2z2n_A 93 T------------------------------------------------------------LPNPDSAPYGITEGPNGDI 112 (299)
T ss_dssp E------------------------------------------------------------CSSTTCCEEEEEECTTSCE
T ss_pred e------------------------------------------------------------CCCcCCCceeeEECCCCCE
Confidence 0 01133467889999988 5
Q ss_pred EEEEECCCcEEEEECCCCeeeeEe-e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEEE
Q 005646 368 LLSASIDKTVRLWRVGNDHCLRVF-P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVC 443 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~~~~~~~-~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~ 443 (686)
+++...++.|.+||. +++..... . +...+.++++.| +++++++...++.|..||. +++..... .....+..++
T Consensus 113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~ 189 (299)
T 2z2n_A 113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGIT 189 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEE
Confidence 555556789999998 55443322 2 456789999998 8888887777889999999 77665432 2345688999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-----
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----- 518 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~----- 518 (686)
++++|+.+++...++.|.+||. ++.... .. ...+...+.++++.+ ++.++++...++.|..||...
T Consensus 190 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~----~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~ 260 (299)
T 2z2n_A 190 KGNDDALWFVEIIGNKIGRITT-SGEITE---FK----IPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTSNNIIEEY 260 (299)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEEE---EE----CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEETTTEEEEE
T ss_pred ECCCCCEEEEccCCceEEEECC-CCcEEE---EE----CCCCCCCceeEEECC-CCCEEEeccCCceEEEECCCCceEEE
Confidence 9999997777667889999998 554321 11 112346689999999 566666655778888888532
Q ss_pred ----------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 519 ----------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 519 ----------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.+.+ ++|++.++.+ .+.|..++..++
T Consensus 261 ~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 261 PIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp ECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred eCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 1334 5666655544 455666665543
No 195
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.29 E-value=4.1e-11 Score=126.10 Aligned_cols=187 Identities=9% Similarity=-0.023 Sum_probs=132.1
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCce
Q 005646 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (686)
++..+++++...+|++|+.++ +++|++........ .....
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~~------------------------------------- 78 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT--SDSTP------------------------------------- 78 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSCC-------------------------------------
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--ccccc-------------------------------------
Confidence 689999999999999999985 66699865431000 00000
Q ss_pred EEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCE
Q 005646 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~ 409 (686)
-.+.... .+.. |..|+| ++ .|+++ .++.|++||+.+........ |...|.++.+.+ . .
T Consensus 79 ------------~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~ 138 (388)
T 1xip_A 79 ------------LTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--T 138 (388)
T ss_dssp ------------CCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--E
T ss_pred ------------ccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--C
Confidence 0111112 2556 999999 66 78777 88999999998776554444 778898888766 2 3
Q ss_pred EEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc---cCCC
Q 005646 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK---KAPC 486 (686)
Q Consensus 410 l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~ 486 (686)
++++..||.|.+||+.++.... +...|++++|+|+| +++|..||++++|+...........+...... ..|.
T Consensus 139 ~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~ 213 (388)
T 1xip_A 139 LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE 213 (388)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT
T ss_pred EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC
Confidence 8889999999999999887654 45689999999999 77899999999998877664211112111111 1356
Q ss_pred CCeEEEEEeCCCCCeEEE
Q 005646 487 KRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 487 ~~I~~l~fsp~~~~~l~~ 504 (686)
..|.++.|.+ +..++++
T Consensus 214 ~~V~sI~wl~-~~~flv~ 230 (388)
T 1xip_A 214 YSPLSVTILS-PQDFLAV 230 (388)
T ss_dssp SEEEEEEESS-SSEEEEE
T ss_pred eeEEEEEEec-CCeEEEE
Confidence 8899999999 5555544
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=1.6e-09 Score=113.51 Aligned_cols=269 Identities=13% Similarity=0.098 Sum_probs=174.1
Q ss_pred ecCCCccceeec-----cceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------CCCcE
Q 005646 210 RLNEEDAMFCSK-----VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVV 274 (686)
Q Consensus 210 s~~~~~l~~g~~-----d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I 274 (686)
.+++..+..... ++.|.+.|..+... ..++.....+ . ++++|||++|+.+. .++.|
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence 466666655543 57899998765432 1233334445 4 99999999888775 36789
Q ss_pred EEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCC
Q 005646 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (686)
Q Consensus 275 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 354 (686)
.+||..+.+.+..+...... . . ...
T Consensus 112 sviD~~t~~v~~~I~v~~g~---------------------------------------------------r---~-~~g 136 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAP---------------------------------------------------R---F-LVG 136 (386)
T ss_dssp EEECTTTCCEEEEEEETTCC---------------------------------------------------C---C-CBS
T ss_pred EEEECCCCeEEEEEECCCcc---------------------------------------------------c---c-ccC
Confidence 99999998866655432100 0 0 011
Q ss_pred CCeeEEEeeCCC-EEEEEEC--CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-CcEE
Q 005646 355 GEILDLSWSKNN-YLLSASI--DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVV 430 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~--Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-~~~~ 430 (686)
..-..++++|+| +|+.+.. ++.|.++|+.+++.+.++.-.+. ....|...+.|++.+.||++.+.++.+ +++.
T Consensus 137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEE
Confidence 234578999999 7777663 68999999999999999874442 233464677888999999999999976 5653
Q ss_pred EEec-c----CCcE-EEEEEc-cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc----ccCCCCCeEEEEEeCCCC
Q 005646 431 DWVD-I----RQIV-TAVCYR-PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 431 ~~~~-~----~~~V-~~v~~s-pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~I~~l~fsp~~~ 499 (686)
.... + ..++ ....|. ++|++++ .+.+|+|++.|+.+........+.+... ..-....+..++++| ++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~ 291 (386)
T 3sjl_D 214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-AL 291 (386)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TT
T ss_pred EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CC
Confidence 2111 1 1222 124564 6886555 5568999999998776443333321100 000112344577788 55
Q ss_pred CeEEEEeC----------CCcEEEEeCCc--------------ceeEcCCCC-EEEEE-eCCCcEEEEeCCCCC
Q 005646 500 SKVMVSCA----------DSQVRILQGPN--------------VIGKYKDGK-HIVSA-GEDSNVYMWNCIGHE 547 (686)
Q Consensus 500 ~~l~~~s~----------D~~I~iwd~~~--------------~~~~~~dg~-~l~sg-s~Dg~V~iWd~~~~~ 547 (686)
+.+.+... .++|.++|..+ .+.+++|++ +|++. ..++.|.++|..+++
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 66655432 25788888754 377889997 66665 458999999998876
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.28 E-value=3.9e-09 Score=107.03 Aligned_cols=221 Identities=6% Similarity=0.030 Sum_probs=156.9
Q ss_pred ccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeecc
Q 005646 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (686)
.+...+.+|++.++|+++++...++.|.+||.. ++. ..+.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~-------------------------------------- 51 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYP-------------------------------------- 51 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE--------------------------------------
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEec--------------------------------------
Confidence 355689999999999987776667899999876 431 1110
Q ss_pred CCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEe
Q 005646 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFN 403 (686)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fs 403 (686)
+..+...+.++++.+++ ++++...++.|..||.. ++. ..+. ....+.++++.
T Consensus 52 ----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~ 107 (299)
T 2z2n_A 52 ----------------------LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEG 107 (299)
T ss_dssp ----------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEEC
T ss_pred ----------------------CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEEC
Confidence 01133568899999998 55555557889999986 332 2232 45679999999
Q ss_pred ecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc
Q 005646 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (686)
Q Consensus 404 p~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 481 (686)
| ++.++++...++.|.+||. +++..... .....+..++++++|+.+++...++.|..||. +++... ..
T Consensus 108 ~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~---- 177 (299)
T 2z2n_A 108 P-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE---FK---- 177 (299)
T ss_dssp T-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EE----
T ss_pred C-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---ee----
Confidence 8 8888888777889999998 66555432 23456899999999988877777889999998 554432 11
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.......+.++++.+ ++.++++...++.|.+|+... .+++.++|+++++...++.|.+|+.
T Consensus 178 ~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 178 IPTPASGPVGITKGN-DDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCCCcceeEEECC-CCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 112335688999998 567666666678888887621 2455668887776667788999987
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.24 E-value=1.6e-10 Score=132.99 Aligned_cols=236 Identities=12% Similarity=0.033 Sum_probs=153.1
Q ss_pred eeeecCCCccc-----eeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCc--------
Q 005646 207 ERVRLNEEDAM-----FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV-------- 273 (686)
Q Consensus 207 ~~~s~~~~~l~-----~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~-------- 273 (686)
.+++++|++++ .|+.+..|++|++........ ..+... ....++|+|||+.|+.++.|..
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCcc--cccceEEecCCCEEEEEEecCCCCCccccC
Confidence 47889999888 455567899999876542100 011111 1267999999999999998876
Q ss_pred -----EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeE
Q 005646 274 -----VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLH 348 (686)
Q Consensus 274 -----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (686)
|++|++.++.... ..+.
T Consensus 199 ~~~~~v~~~~l~t~~~~~----------------------------------------------------------~lv~ 220 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKD----------------------------------------------------------TVVH 220 (695)
T ss_dssp GGGCEEEEEETTSCGGGC----------------------------------------------------------EEEE
T ss_pred CCCCEEEEEECCCCchhc----------------------------------------------------------eEEE
Confidence 9999887654100 0111
Q ss_pred EeccCCCCeeEEEeeCCC-EEEEEECCC----cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE---cCCcEE
Q 005646 349 EFHGHSGEILDLSWSKNN-YLLSASIDK----TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS---IDGKVR 420 (686)
Q Consensus 349 ~l~~h~~~V~~l~~s~~~-~L~s~s~Dg----~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs---~Dg~V~ 420 (686)
....|...+..+.|+|+| +|+.++.++ .|.+|+..++.......+...+....+ | ++.++++.. .++.|.
T Consensus 221 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~ 298 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVF 298 (695)
T ss_dssp CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEE
T ss_pred ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEE
Confidence 223456678899999999 777666555 677777666655555556666777777 5 555544444 258899
Q ss_pred EEecCCCcE---EEEecc--CCcEEEEEEccCCCEEEEEecCCcEEEEeCC-CCeeeeeeeEEeeccccCCCCCeEEEEE
Q 005646 421 IWAVLSCHV---VDWVDI--RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQF 494 (686)
Q Consensus 421 iwd~~~~~~---~~~~~~--~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~I~~l~f 494 (686)
+||+.++.. ..+..+ ...+..++++ ++.++++...++..+||.+. +++... .+ .......+..+.+
T Consensus 299 ~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l-----~~~~~~~v~~~~~ 370 (695)
T 2bkl_A 299 EVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR--TV-----QLPGVGAASNLMG 370 (695)
T ss_dssp EEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE--EC-----CCSSSSEECCCBS
T ss_pred EEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE--Ee-----cCCCCeEEEEeec
Confidence 999987652 444443 4457888888 77788888889988888654 222111 01 1112355777888
Q ss_pred eCCCCCeEEEEe----CCCcEEEEeCCc
Q 005646 495 LPQDSSKVMVSC----ADSQVRILQGPN 518 (686)
Q Consensus 495 sp~~~~~l~~~s----~D~~I~iwd~~~ 518 (686)
+| ++..++... ..++|++||..+
T Consensus 371 s~-d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 371 LE-DLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp CT-TCSEEEEEEEETTEEEEEEEEETTT
T ss_pred CC-CCCEEEEEEcCCCCCCEEEEEECCC
Confidence 88 555555333 247899999764
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.24 E-value=3.5e-10 Score=114.46 Aligned_cols=182 Identities=12% Similarity=0.067 Sum_probs=135.5
Q ss_pred CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccc
Q 005646 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340 (686)
Q Consensus 261 dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (686)
.+++|++++.|+.|.+||.++++.+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--------------------------------------------------- 32 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--------------------------------------------------- 32 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------------------------------
Confidence 46789999999999999998988544332
Q ss_pred cccCCCeEEeccCC-CCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeC--CCCeEEEEEeecCCCEEEEEEc-
Q 005646 341 RILEKPLHEFHGHS-GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSI- 415 (686)
Q Consensus 341 ~~~~~~~~~l~~h~-~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h--~~~V~~v~fsp~~~~~l~sgs~- 415 (686)
.+. ..+.++.++|+| +|+ +.++.|..||. +++.+..+.. ...+.++++.| +++++++.+.
T Consensus 33 -----------~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~ 97 (276)
T 3no2_A 33 -----------LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGH 97 (276)
T ss_dssp -----------CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEEST
T ss_pred -----------CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCC
Confidence 222 357788999999 555 56889999999 8999988883 35789999999 9999999887
Q ss_pred CCcEEEEecCCCcEEEEecc-------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 416 DGKVRIWAVLSCHVVDWVDI-------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~~~~~~-------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
++.|..+|. +++.+..... ......+++.++|+++++...++.|..||.. ++....... ...
T Consensus 98 ~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~---------~~~ 166 (276)
T 3no2_A 98 PSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL---------SGT 166 (276)
T ss_dssp TEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---------SSC
T ss_pred CCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC---------CCC
Confidence 788888886 6665533321 1234567789999999999999999999998 765543211 023
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.++.+.+ +|++|++++.++.|..+|..+++
T Consensus 167 ~~~~~~~~----------------------------~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 167 PFSSAFLD----------------------------NGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp CCEEEECT----------------------------TSCEEEECBTTSEEEEECTTTCC
T ss_pred ccceeEcC----------------------------CCCEEEEeCCCCeEEEEeCcCCc
Confidence 44566666 67777777777777777777665
No 200
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.21 E-value=3.3e-10 Score=119.18 Aligned_cols=175 Identities=8% Similarity=-0.027 Sum_probs=126.8
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCcccccc---ccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeec
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELS---ALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~ 281 (686)
...+++.....+++|+.+ .++||+.+...+... .-........+.. |+.|+| |+++|+++ .++.|++||+.+
T Consensus 41 nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s 115 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE 115 (388)
T ss_dssp BCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS
T ss_pred cEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh
Confidence 445666777777777776 566698654321000 0011122334677 999999 89999999 889999999876
Q ss_pred CeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEE
Q 005646 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (686)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 361 (686)
.... .....|...|.++.
T Consensus 116 l~~~--------------------------------------------------------------~~~~~~~~~v~~i~ 133 (388)
T 1xip_A 116 LSEF--------------------------------------------------------------RTVTSFEKPVFQLK 133 (388)
T ss_dssp TTCE--------------------------------------------------------------EEEEECSSCEEEEE
T ss_pred hhcc--------------------------------------------------------------CccceeecceeeEE
Confidence 5411 11223455667777
Q ss_pred eeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE--EEEe------
Q 005646 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWV------ 433 (686)
Q Consensus 362 ~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~------ 433 (686)
+.+.. +++++.||.|.+||+.+++... +...|+|++|+| ++ ++.|..||++++|+....++ ...+
T Consensus 134 ~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~ 206 (388)
T 1xip_A 134 NVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSEL 206 (388)
T ss_dssp ECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHH
T ss_pred ecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCccc
Confidence 66553 8889999999999999887653 456899999999 77 78899999999999988875 4333
Q ss_pred ----ccCCcEEEEEEccCCCEEEE
Q 005646 434 ----DIRQIVTAVCYRPDGQGGIV 453 (686)
Q Consensus 434 ----~~~~~V~~v~~spdg~~l~~ 453 (686)
++...|.+|+|.++++++++
T Consensus 207 ~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 207 EELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp HTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ccccCCCeeEEEEEEecCCeEEEE
Confidence 25778999999999988876
No 201
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.20 E-value=1.5e-09 Score=120.90 Aligned_cols=183 Identities=9% Similarity=0.041 Sum_probs=142.9
Q ss_pred CCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC--CCcEEEEeccCCcEE
Q 005646 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL--SCHVVDWVDIRQIVT 440 (686)
Q Consensus 364 ~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~--~~~~~~~~~~~~~V~ 440 (686)
+.+ .+++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+. +.+++..+.......
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~ 243 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 243 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence 444 66777789999999999999999998777788999999 99999999999999999996 777776666666678
Q ss_pred EEEEc----cCCCEEEEEec-CCcEEEEeCCCCeeeeeeeEEeeccc--c-CCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 441 AVCYR----PDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKK--K-APCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 441 ~v~~s----pdg~~l~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~--~-~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
.++|+ |||+++++++. ++++.++|..+.+............. . ....++..+.++++.+..++....+|.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 99999 69999888765 58999999988776543221111000 0 11236888999986666666667789999
Q ss_pred EEeCCc----------------ceeEcCCCCEEEEEe-CCCcEEEEeCCCCC
Q 005646 513 ILQGPN----------------VIGKYKDGKHIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 513 iwd~~~----------------~~~~~~dg~~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
++|..+ ...|+|+|++|+++. .++.|.++|+.+++
T Consensus 324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 998653 256899999988766 57899999999876
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.19 E-value=3e-08 Score=100.49 Aligned_cols=228 Identities=8% Similarity=0.065 Sum_probs=152.5
Q ss_pred eeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005646 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (686)
Q Consensus 208 ~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~ 287 (686)
.+..++...++...++.|.+++.. .. +... .+..+...+.+|++.++|++.++...++.|..||.. ++. ..
T Consensus 26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~ 96 (300)
T 2qc5_A 26 TSSEDGKVWFTQHKANKISSLDQS-GR--IKEF----EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TE 96 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred eECCCCCEEEEcCCCCeEEEECCC-Cc--eEEE----ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EE
Confidence 344555555555567889999865 21 1111 122345679999999999887777667889998876 431 11
Q ss_pred eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-
Q 005646 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (686)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~- 366 (686)
+. +......+.++++.+++
T Consensus 97 ~~------------------------------------------------------------~~~~~~~~~~i~~~~~g~ 116 (300)
T 2qc5_A 97 YP------------------------------------------------------------LPQPDSGPYGITEGLNGD 116 (300)
T ss_dssp EE------------------------------------------------------------CSSTTCCEEEEEECSTTC
T ss_pred ec------------------------------------------------------------CCCCCCCCccceECCCCC
Confidence 10 01122457889999888
Q ss_pred EEEEEECCCcEEEEECCCCeeeeE-ee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEE
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRV-FP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAV 442 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~-~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v 442 (686)
++++...++.|..+|.. ++.... +. ....+.++++.| +++++++...++.|..||. +++..... .....+..+
T Consensus 117 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 193 (300)
T 2qc5_A 117 IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGI 193 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceE
Confidence 55555557899999987 554422 22 456789999999 8887777666889999998 66655432 223468899
Q ss_pred EEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeC
Q 005646 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 443 ~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~ 516 (686)
+++++|+.+++....+.|.+||. ++..... . ...+...+.++++.+ ++.+.++...++.|..++.
T Consensus 194 ~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~---~----~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 194 TSGNDGALWFVEIMGNKIGRITT-TGEISEY---D----IPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCCEEEE---E----CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT
T ss_pred EECCCCCEEEEccCCCEEEEEcC-CCcEEEE---E----CCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC
Confidence 99999987777666778999998 3332211 1 112345688999999 5666666666788888875
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.16 E-value=8.4e-09 Score=105.64 Aligned_cols=238 Identities=9% Similarity=0.072 Sum_probs=150.2
Q ss_pred ceeeecCCCccce-------eeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC-CCEEEEEeCCCcEEEE
Q 005646 206 GERVRLNEEDAMF-------CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLW 277 (686)
Q Consensus 206 ~~~~s~~~~~l~~-------g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~vW 277 (686)
...+..++..+++ +..++.|.+|+....... ... .....++...+.+++++++ |+++++.. .+.|.+|
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~-~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~ 97 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT--VIC-KPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVV 97 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE--EEE-CCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEE
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE--EEE-ecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEE
Confidence 4455556665566 577889999986543221 111 0111235577999999999 76555444 4478889
Q ss_pred EeecCeeeee-eccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 278 QVVEDERLTE-VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 278 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
|.. ++.... .... . ..+...
T Consensus 98 d~~-g~~~~~~~~~~------------------------------------------------------~----~~~~~~ 118 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDS------------------------------------------------------E----GRRMQG 118 (314)
T ss_dssp ETT-SCEEECCSBCT------------------------------------------------------T----SCBCBC
T ss_pred eCC-CCEEEEEeccC------------------------------------------------------C----CccccC
Confidence 876 542111 0000 0 012245
Q ss_pred eeEEEeeCCC-EEEEEECC---------------CcEEEEECCCCeeeeEeeCCCCeEEEEEe----ecCCCEEEEE-Ec
Q 005646 357 ILDLSWSKNN-YLLSASID---------------KTVRLWRVGNDHCLRVFPHSNYVTCVHFN----PVDDNYFISG-SI 415 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~D---------------g~V~iWd~~~~~~~~~~~h~~~V~~v~fs----p~~~~~l~sg-s~ 415 (686)
+.++++.++| ++++...+ +.|..||.. ++......+......++|+ | +++.++.+ ..
T Consensus 119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~ 196 (314)
T 1pjx_A 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDG-RPYQLIVAETP 196 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTS-CEEEEEEEETT
T ss_pred CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCC-CCCEEEEEECC
Confidence 7889999998 44444433 467777765 5554444455667899999 9 77655444 56
Q ss_pred CCcEEEEecC-CCcEE---EEe---ccC-CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCC
Q 005646 416 DGKVRIWAVL-SCHVV---DWV---DIR-QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (686)
Q Consensus 416 Dg~V~iwd~~-~~~~~---~~~---~~~-~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 487 (686)
++.|.+||+. +++.. .+. .+. ..+..++++++|+++++...++.|.+||..+++.... +. .+..
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~--~~------~~~~ 268 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR--IR------CPFE 268 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE--EE------CSSS
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEE--Ee------CCCC
Confidence 7899999986 44421 111 122 5678999999999888877889999999875543321 11 1235
Q ss_pred CeEEEEEeCCCCC-eEEEEeCCCcEEEEeCC
Q 005646 488 RITGFQFLPQDSS-KVMVSCADSQVRILQGP 517 (686)
Q Consensus 488 ~I~~l~fsp~~~~-~l~~~s~D~~I~iwd~~ 517 (686)
.+.+++|+| ++. ++++...++.|..|+..
T Consensus 269 ~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 269 KPSNLHFKP-QTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CEEEEEECT-TSSEEEEEETTTTEEEEEECS
T ss_pred CceeEEECC-CCCEEEEEeCCCCeEEEEeCC
Confidence 689999988 666 44555567889998865
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.16 E-value=4.2e-09 Score=112.86 Aligned_cols=196 Identities=13% Similarity=0.040 Sum_probs=134.4
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
.....|+|+++|+++++...++.|++||..++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~------------------------------------------ 168 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH------------------------------------------ 168 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee------------------------------------------
Confidence 46889999999998888777899999998776532111
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCC--cEEEEECCCCeeeeEe----e-CCCCeEEEEE
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVF----P-HSNYVTCVHF 402 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg--~V~iWd~~~~~~~~~~----~-h~~~V~~v~f 402 (686)
. ...... ++|++++ .|+.+..++ .|.+|+...+.....+ . ....+.++++
T Consensus 169 --------------------~-~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav 226 (409)
T 3hrp_A 169 --------------------P-GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVAL 226 (409)
T ss_dssp --------------------E-TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEE
T ss_pred --------------------c-cCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEE
Confidence 0 111223 8899998 888888766 7899988766554444 3 4567889999
Q ss_pred eecCCCEEEEEEcCCcEEEEecCCCcEEEE----e-ccCCcE-E-EEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeee
Q 005646 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDW----V-DIRQIV-T-AVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 403 sp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~----~-~~~~~V-~-~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~ 474 (686)
+| ++..|+.+..++.|+.||..++....+ . .....- . .++|+|+ +.++++-..++.|+.|+........
T Consensus 227 ~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~-- 303 (409)
T 3hrp_A 227 DE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWF-- 303 (409)
T ss_dssp CT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEE--
T ss_pred eC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEE--
Confidence 99 555666677789999999988765433 1 111111 2 8999995 6566666678899999987542111
Q ss_pred eEEeec---------cccCCCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEeC
Q 005646 475 EICVHS---------KKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQG 516 (686)
Q Consensus 475 ~~~~~~---------~~~~~~~~I~~l~fsp~~~~~l~~~s-~D~~I~iwd~ 516 (686)
.... ..........+++++| ++.++++-. .+++|+.|+.
T Consensus 304 --~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 304 --CGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp --EECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEET
T ss_pred --EeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEEC
Confidence 1100 0011134588999999 677777777 8899999983
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.16 E-value=4e-09 Score=112.42 Aligned_cols=257 Identities=11% Similarity=0.097 Sum_probs=171.4
Q ss_pred ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------CCCcEEEEEeecCeeeeeeccCC
Q 005646 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPE 292 (686)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~vWd~~~~~~~~~~~~~~ 292 (686)
+.|.+.|..+... ..++..-..+ .+.++|||++|+.+. .++.|.++|..+.+.+..+....
T Consensus 99 ~~VsVID~~t~~v-------v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g 169 (426)
T 3c75_H 99 TQQFVIDGSTGRI-------LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD 169 (426)
T ss_dssp EEEEEEETTTTEE-------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred CeEEEEECCCCEE-------EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC
Confidence 7899998765432 1223333445 899999999888876 36789999999988666554320
Q ss_pred CCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEE
Q 005646 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (686)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~ 371 (686)
.. .+ ........+.++|+| +|+.+
T Consensus 170 ~~------------------------------------------------------r~-~~g~~P~~~~~spDGk~lyV~ 194 (426)
T 3c75_H 170 AP------------------------------------------------------RF-LVGTYQWMNALTPDNKNLLFY 194 (426)
T ss_dssp CC------------------------------------------------------CC-CBSCCGGGSEECTTSSEEEEE
T ss_pred cc------------------------------------------------------cc-ccCCCcceEEEcCCCCEEEEE
Confidence 00 00 011233578899999 77777
Q ss_pred EC--CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE----ecc-CCc-EEEEE
Q 005646 372 SI--DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW----VDI-RQI-VTAVC 443 (686)
Q Consensus 372 s~--Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~----~~~-~~~-V~~v~ 443 (686)
.. +++|.+.|+.+++.+..+.-.+. ....|.....+++.+.||++.+.+..++++... +.. ..+ ...+.
T Consensus 195 n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~ 271 (426)
T 3c75_H 195 QFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPA 271 (426)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCE
T ss_pred ecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEee
Confidence 64 57899999999999988874332 345563457788888999999999976665522 111 111 12357
Q ss_pred EccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc-cC---CCCCeEEEEEeCCCCCeEEEEeC----------CC
Q 005646 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK-KA---PCKRITGFQFLPQDSSKVMVSCA----------DS 509 (686)
Q Consensus 444 ~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~---~~~~I~~l~fsp~~~~~l~~~s~----------D~ 509 (686)
|.+++..++..+..+.+.+.|+..........+.+.... .. .......+.++| ++..++++.. ++
T Consensus 272 ~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~ 350 (426)
T 3c75_H 272 FSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASR 350 (426)
T ss_dssp ECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEE
T ss_pred ecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccccccCCCC
Confidence 899999888888899999999976654332222211000 00 001122378999 5565555432 35
Q ss_pred cEEEEeCCc--------------ceeEcCCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005646 510 QVRILQGPN--------------VIGKYKDGK-HIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 510 ~I~iwd~~~--------------~~~~~~dg~-~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
.|.++|..+ .+.+++||+ +|++.. .++.|.|+|..+.+
T Consensus 351 ~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 351 FVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 799999754 367889999 888888 59999999999876
No 206
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.14 E-value=5.3e-09 Score=104.65 Aligned_cols=196 Identities=11% Similarity=-0.019 Sum_probs=133.2
Q ss_pred ceEEEEEeeCCCEEE-EEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 252 SILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 252 ~I~~l~fspdg~~La-sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
...+|+++++|++++ +.+.++.|.+|+..+..... +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~------------------------------------------ 61 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-L------------------------------------------ 61 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-C------------------------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-E------------------------------------------
Confidence 678999999999777 44678899999865432100 0
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEe-eCCCCeEEEEEeecCCCE
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~~~V~~v~fsp~~~~~ 409 (686)
...+...+.++++.+++.|+.+..++.|.+||.......... .....+.+++++| ++++
T Consensus 62 -------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l 121 (270)
T 1rwi_B 62 -------------------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAV 121 (270)
T ss_dssp -------------------CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCE
T ss_pred -------------------eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCE
Confidence 011234567899999884444444889999998765443222 2336789999999 8888
Q ss_pred EEEEEcCCcEEEEecCCCcEEEEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 410 FISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 410 l~sgs~Dg~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
+++...++.|.+|+..+....... .....+..++++|+|+.+++...++.|.+||..+...... ...+...
T Consensus 122 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~ 193 (270)
T 1rwi_B 122 YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--------PFTDITA 193 (270)
T ss_dssp EEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--------CCSSCCS
T ss_pred EEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--------cccCCCC
Confidence 888778899999987665443222 2224578899999999777777788999999876543221 1112245
Q ss_pred eEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+.++++.+ +|.++++...++.|++|+..+.
T Consensus 194 p~~i~~d~----------------------------~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 194 PWGIAVDE----------------------------AGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp EEEEEECT----------------------------TCCEEEEETTTSCEEEECTTCS
T ss_pred ceEEEECC----------------------------CCCEEEEECCCCcEEEEcCCCC
Confidence 77888887 6766666667778888887653
No 207
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=1e-08 Score=105.13 Aligned_cols=218 Identities=10% Similarity=-0.014 Sum_probs=143.4
Q ss_pred ecccCCceEEEEEeeCCC-EEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEe
Q 005646 246 IQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (686)
Q Consensus 246 l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (686)
+..+........|+|+|+ ++++...++.|..|+. +++.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~---------------------------------------- 78 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV---------------------------------------- 78 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE----------------------------------------
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE----------------------------------------
Confidence 444556678899999998 6677777889999986 3331
Q ss_pred eccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEE-CCCcEEEEECCCCeeeeEee-----CCCCeE
Q 005646 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS-IDKTVRLWRVGNDHCLRVFP-----HSNYVT 398 (686)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s-~Dg~V~iWd~~~~~~~~~~~-----h~~~V~ 398 (686)
..+..+...+..++++++|.|+.+. .++.|.+|+.. ++...... ....++
T Consensus 79 -----------------------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 79 -----------------------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp -----------------------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred -----------------------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence 1122244567899999999555554 45789999986 54332222 124577
Q ss_pred EEEEeecCCCEEEE----EEc-------------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecC----
Q 005646 399 CVHFNPVDDNYFIS----GSI-------------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---- 457 (686)
Q Consensus 399 ~v~fsp~~~~~l~s----gs~-------------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~d---- 457 (686)
.+++.| +++++++ |.. .+.|..||..+++..... .......++|+|||+.|+++...
T Consensus 135 ~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~ 212 (305)
T 3dr2_A 135 DLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGH 212 (305)
T ss_dssp CEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---
T ss_pred CEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCC
Confidence 899999 8998886 332 256888888777665444 44557889999999988877665
Q ss_pred --CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC-------------cceeE
Q 005646 458 --GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------------NVIGK 522 (686)
Q Consensus 458 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~-------------~~~~~ 522 (686)
+.|++|++....+.. ..... . .......++.+.+ ++. |.++..+ .|.+|+.. ..++|
T Consensus 213 ~~~~i~~~~~~~~~l~~-~~~~~-~---~~~~~pdgi~~d~-~G~-lwv~~~~-gv~~~~~~g~~~~~~~~~~~~~~~~f 284 (305)
T 3dr2_A 213 GSVEITAFAWRDGALHD-RRHFA-S---VPDGLPDGFCVDR-GGW-LWSSSGT-GVCVFDSDGQLLGHIPTPGTASNCTF 284 (305)
T ss_dssp CCCEEEEEEEETTEEEE-EEEEE-C---CSSSCCCSEEECT-TSC-EEECCSS-EEEEECTTSCEEEEEECSSCCCEEEE
T ss_pred CCCEEEEEEecCCCccC-CeEEE-E---CCCCCCCeEEECC-CCC-EEEecCC-cEEEECCCCCEEEEEECCCceeEEEE
Confidence 789999987655211 11111 1 1123456788888 556 4444444 48888743 23567
Q ss_pred cCCCCEEEEEeCCCcE
Q 005646 523 YKDGKHIVSAGEDSNV 538 (686)
Q Consensus 523 ~~dg~~l~sgs~Dg~V 538 (686)
.++++.|..++.++..
T Consensus 285 ~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 285 DQAQQRLFITGGPCLW 300 (305)
T ss_dssp CTTSCEEEEEETTEEE
T ss_pred eCCCCEEEEEcCCeEE
Confidence 7788888877776433
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.11 E-value=7.7e-08 Score=97.41 Aligned_cols=220 Identities=7% Similarity=-0.010 Sum_probs=154.7
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (686)
....+.+|++.++|++.++...++.|.+||.. ++.. .+.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~--------------------------------------- 56 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE--------------------------------------- 56 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE---------------------------------------
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE---------------------------------------
Confidence 45678999999999988877778899999876 4311 110
Q ss_pred CceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEee
Q 005646 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNP 404 (686)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp 404 (686)
+..+...+..+++.+++ ++++...++.|..||.. ++.. .+. ....+.++++.|
T Consensus 57 ---------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~ 113 (300)
T 2qc5_A 57 ---------------------VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGL 113 (300)
T ss_dssp ---------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECS
T ss_pred ---------------------CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECC
Confidence 11233567889999988 55555557889999988 5543 232 346799999998
Q ss_pred cCCCEEEEEEcCCcEEEEecCCCcEEEEe--ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccc
Q 005646 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (686)
Q Consensus 405 ~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 482 (686)
+++++++...++.|..||.. ++..... .....+..+++.++|+.+++...++.|..||. +++... +. .
T Consensus 114 -~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~----~ 183 (300)
T 2qc5_A 114 -NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YP----L 183 (300)
T ss_dssp -TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE----C
T ss_pred -CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---ee----C
Confidence 88888887778899999987 6655332 23456899999999997766666789999998 444321 11 1
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
..+...+.++.+.+ ++.++++....+.|.+++... .+++.++|++.++...++.|..|+.
T Consensus 184 ~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 184 PTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 12335688999998 667666666677888887531 2455667776666666788888887
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.11 E-value=1.4e-08 Score=108.76 Aligned_cols=238 Identities=13% Similarity=0.061 Sum_probs=144.3
Q ss_pred eeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCC--cEEEEEeecCee
Q 005646 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG--VVRLWQVVEDER 284 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~I~vWd~~~~~~ 284 (686)
..+.++++.+++...++.|++|+...... ..+ +.. ..... ++|++++++|+.+..++ .|.+|+..++..
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~--~~~-----~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKV--TTV-----HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEE--EEE-----EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEE--EEe-----ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 34555666566666678999998764322 111 111 12233 99999999999988866 677777654431
Q ss_pred eeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc-CCCCeeEEEee
Q 005646 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSWS 363 (686)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s 363 (686)
...+ ..+.. +...+.+++++
T Consensus 207 ~~~~-----------------------------------------------------------g~~~~~~~~~p~~iav~ 227 (409)
T 3hrp_A 207 PTRI-----------------------------------------------------------GQLGSTFSGKIGAVALD 227 (409)
T ss_dssp EEEE-----------------------------------------------------------EECCTTSCSCCCBCEEC
T ss_pred eEEe-----------------------------------------------------------eeccchhcCCcEEEEEe
Confidence 1111 00011 33456789999
Q ss_pred C-CCEEEEEECCCcEEEEECCCCeeeeE----ee-CCCCe--EEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc
Q 005646 364 K-NNYLLSASIDKTVRLWRVGNDHCLRV----FP-HSNYV--TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 364 ~-~~~L~s~s~Dg~V~iWd~~~~~~~~~----~~-h~~~V--~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
| ++.|+.+..++.|+.||..++..... .. +...- ..++|+|.++.++++-..++.|+.|+.... ...+.+.
T Consensus 228 p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~ 306 (409)
T 3hrp_A 228 ETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGS 306 (409)
T ss_dssp TTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEEC
T ss_pred CCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeC
Confidence 9 56666677788999999987764332 11 22222 399999944666666667889999997654 3333333
Q ss_pred C---------------CcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEE-eec-----cccCCCCCeEEEE
Q 005646 436 R---------------QIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEIC-VHS-----KKKAPCKRITGFQ 493 (686)
Q Consensus 436 ~---------------~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~-~~~-----~~~~~~~~I~~l~ 493 (686)
. .....++++|+|+++++-. .++.|+.|++.++.+....... ... ..........+++
T Consensus 307 ~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~gia 386 (409)
T 3hrp_A 307 ATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDIC 386 (409)
T ss_dssp TTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred CCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence 2 3478999999999777777 7899999998777643211000 000 0011124577788
Q ss_pred EeCCCCCeEEEEeCCCcEEEE
Q 005646 494 FLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~~I~iw 514 (686)
+.+ ++.++++-..+++|+.+
T Consensus 387 vd~-~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 387 YDG-EGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECS-SSEEEEEESTTCEEEEE
T ss_pred EcC-CCCEEEEECCCCeEEEE
Confidence 887 34444444444555444
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.05 E-value=4e-08 Score=102.90 Aligned_cols=181 Identities=8% Similarity=-0.004 Sum_probs=121.7
Q ss_pred EEEeeCCC-EEEEEE----------CCCcEEEEECCCCeeeeEeeCC--------CCeEEEEEeecCCCEEEEEEc--CC
Q 005646 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFPHS--------NYVTCVHFNPVDDNYFISGSI--DG 417 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s----------~Dg~V~iWd~~~~~~~~~~~h~--------~~V~~v~fsp~~~~~l~sgs~--Dg 417 (686)
.++++|++ +|+.+. .+++|.+||..+.+.+..+.-. .....++|+| ++++++++.. ++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCC
Confidence 39999999 565554 3678999999999998887521 2567799999 9999888874 68
Q ss_pred cEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeE-EEEEe
Q 005646 418 KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRIT-GFQFL 495 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~-~l~fs 495 (686)
.|.++|+.+++++..+...+. ...+....+.+++.+.||++.+.++.. ++..... .........++. ...|.
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~----~~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH----TEVFHPEDEFLINHPAYS 234 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE----CCCCSCTTSCBCSCCEEE
T ss_pred eEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee----cceeccccccccccceeE
Confidence 999999999999877766543 233433556777888899999999876 5542111 011111111221 23565
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCc---------------------------ceeEcCCCCEEEEEeC----------CCcE
Q 005646 496 PQDSSKVMVSCADSQVRILQGPN---------------------------VIGKYKDGKHIVSAGE----------DSNV 538 (686)
Q Consensus 496 p~~~~~l~~~s~D~~I~iwd~~~---------------------------~~~~~~dg~~l~sgs~----------Dg~V 538 (686)
+.++.++ ..+.+++|.+.|..+ .++++++++.|+.... .+.|
T Consensus 235 ~~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V 313 (386)
T 3sjl_D 235 QKAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 313 (386)
T ss_dssp TTTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred cCCCcEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence 4355444 455678888888632 1445567787777643 2568
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
.+.|+.+.+
T Consensus 314 ~viD~~t~k 322 (386)
T 3sjl_D 314 VVLDAKTGE 322 (386)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCe
Confidence 888988876
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.03 E-value=1.2e-08 Score=118.38 Aligned_cols=234 Identities=11% Similarity=-0.020 Sum_probs=145.9
Q ss_pred eeeecCCCccceeecc-----ceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCc--------
Q 005646 207 ERVRLNEEDAMFCSKV-----QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV-------- 273 (686)
Q Consensus 207 ~~~s~~~~~l~~g~~d-----~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~-------- 273 (686)
.++++++++++.+..+ ..|++|++...... . ...+...+..++|+|| +.|+.++.|+.
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~--~------~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL--A------DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE--E------EEEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC--C------ccCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 5778899988877654 57999998765321 0 1112222357899999 99999887664
Q ss_pred ------EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCe
Q 005646 274 ------VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (686)
Q Consensus 274 ------I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (686)
|++|++.++.... ..+
T Consensus 239 ~~~~~~v~~~~lgt~~~~~----------------------------------------------------------~lv 260 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSAD----------------------------------------------------------QPV 260 (741)
T ss_dssp CCCCCEEEEEETTSCGGGC----------------------------------------------------------EEE
T ss_pred CCCCCEEEEEECCCCchhC----------------------------------------------------------EEE
Confidence 5666654432100 001
Q ss_pred EEeccCCCCeeEEEeeCCC-EEEEEECCC-----cEEEEECCCC--e-eeeEeeCCCCeEEEEEeecCCCEEEEEEcC--
Q 005646 348 HEFHGHSGEILDLSWSKNN-YLLSASIDK-----TVRLWRVGND--H-CLRVFPHSNYVTCVHFNPVDDNYFISGSID-- 416 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg-----~V~iWd~~~~--~-~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D-- 416 (686)
.....|...+..+.|+|+| +|+..+.++ .|.+||+.++ + ......+...+.... .| +++.|+..+.+
T Consensus 261 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~ 338 (741)
T 1yr2_A 261 FATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGA 338 (741)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTC
T ss_pred eccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCC
Confidence 1112344458899999999 777666443 8999999887 4 333333555555554 47 78888777753
Q ss_pred --CcEEEEecCCC--cEEEEecc-CCcEEEEEEccCCCEEEEEecCCcEEEEeCC-CCeeeeeeeEEeeccccCCCCCeE
Q 005646 417 --GKVRIWAVLSC--HVVDWVDI-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 417 --g~V~iwd~~~~--~~~~~~~~-~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
+.|.+||+.++ ....+..+ ...+..++++ ++.++++...++..+||.+. ++.... .+ .......+.
T Consensus 339 ~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l-----~~~~~~~v~ 410 (741)
T 1yr2_A 339 PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG--AV-----SLPGIGSAS 410 (741)
T ss_dssp TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE--EC-----BCSSSCEEE
T ss_pred CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee--ec-----cCCCCeEEE
Confidence 45999999874 34444443 3456677777 56677888888887777554 222211 01 111235688
Q ss_pred EEEEeCCCCCeEE-EEe---CCCcEEEEeCCc
Q 005646 491 GFQFLPQDSSKVM-VSC---ADSQVRILQGPN 518 (686)
Q Consensus 491 ~l~fsp~~~~~l~-~~s---~D~~I~iwd~~~ 518 (686)
.+.++| ++..++ +.+ ..++|++||..+
T Consensus 411 ~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 411 GLSGRP-GDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEECCB-TCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EeecCC-CCCEEEEEEcCCCCCCEEEEEECCC
Confidence 899999 455444 333 347899999764
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.02 E-value=2.7e-07 Score=97.41 Aligned_cols=148 Identities=7% Similarity=-0.064 Sum_probs=97.7
Q ss_pred EEEeeCCC-EEEEEE----------CCCcEEEEECCCCeeeeEeeCC--------CCeEEEEEeecCCCEEEEEEc--CC
Q 005646 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFPHS--------NYVTCVHFNPVDDNYFISGSI--DG 417 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s----------~Dg~V~iWd~~~~~~~~~~~h~--------~~V~~v~fsp~~~~~l~sgs~--Dg 417 (686)
.++++|++ +|+.+. .++.|.+||..+.+.+..+.-. .....++|+| ++++|++++. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 89999999 666664 3678999999998887776522 3456899999 9999998874 47
Q ss_pred cEEEEecCCCcEEEE-eccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC-eEEEEE
Q 005646 418 KVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR-ITGFQF 494 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~-~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-I~~l~f 494 (686)
.|.++| .+++++.. ...... +.+.|++ +.+++.+.||.+.++|. +++...... ..... ....+ .....+
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~--~~~~~-~~~~p~~~~~~~ 220 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL--VGAML-TAAQNLLTQPAQ 220 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe--ccccc-cCCcceeeccee
Confidence 899999 99998876 665543 4455655 45566778999999999 766542111 00000 01111 123456
Q ss_pred eCCCCCeEEEEeCCCcEEEEeC
Q 005646 495 LPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 495 sp~~~~~l~~~s~D~~I~iwd~ 516 (686)
.++++ .++..+..+.+.+.|.
T Consensus 221 ~~~~~-~~~~~~~~~~v~vid~ 241 (373)
T 2mad_H 221 ANKSG-RIVWPVYSGKILQADI 241 (373)
T ss_pred EecCC-EEEEEcCCceEEEEec
Confidence 66433 3333345677777765
No 213
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=2.1e-07 Score=98.20 Aligned_cols=174 Identities=10% Similarity=0.134 Sum_probs=122.2
Q ss_pred eEEEeeCCCEEEEEECC------CcEEEEECCCCeeeeEeeC---C-CCeEEEEEeecCCCEEEEEE-------------
Q 005646 358 LDLSWSKNNYLLSASID------KTVRLWRVGNDHCLRVFPH---S-NYVTCVHFNPVDDNYFISGS------------- 414 (686)
Q Consensus 358 ~~l~~s~~~~L~s~s~D------g~V~iWd~~~~~~~~~~~h---~-~~V~~v~fsp~~~~~l~sgs------------- 414 (686)
..+...|+|.++++..+ +.|.+.|..+.+.+..+.. . ..-..+.|+| +++.+++..
T Consensus 141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 45667788855555544 7899999999999998862 1 2344688899 889888884
Q ss_pred ------cCCcEEEEecCCCcEEEEeccC---CcEEEEEE--ccCCCEEEEEe------cCCcEEEEeCCCCeeeeeeeEE
Q 005646 415 ------IDGKVRIWAVLSCHVVDWVDIR---QIVTAVCY--RPDGQGGIVGS------MMGDCRFYNVSDNHLELDAEIC 477 (686)
Q Consensus 415 ------~Dg~V~iwd~~~~~~~~~~~~~---~~V~~v~~--spdg~~l~~gs------~dg~i~iwd~~~~~~~~~~~~~ 477 (686)
.+.+|.+||+.+++++..+... .....+.| +|+|+++++++ .+++|.+|....+.+.....+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 3689999999998887776664 34555656 99999988877 4668888877666554433332
Q ss_pred eeccc-cC-----------CCCCeEEEEEeCCCCCeEEEEe-CCCcEEEEeCC---------------------------
Q 005646 478 VHSKK-KA-----------PCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGP--------------------------- 517 (686)
Q Consensus 478 ~~~~~-~~-----------~~~~I~~l~fsp~~~~~l~~~s-~D~~I~iwd~~--------------------------- 517 (686)
+.... .. .......+.++| ++++|.++. ..+.|.+||..
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~ 378 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK 378 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred CCCccccccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence 22210 00 024578999999 566555554 57899999852
Q ss_pred -----cceeEcCCCCEEEEEe
Q 005646 518 -----NVIGKYKDGKHIVSAG 533 (686)
Q Consensus 518 -----~~~~~~~dg~~l~sgs 533 (686)
..+++++||++|+++.
T Consensus 379 ~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 379 LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCCEEEEcCCCCEEEEEc
Confidence 3456777898888887
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.01 E-value=1.6e-07 Score=97.23 Aligned_cols=155 Identities=13% Similarity=0.023 Sum_probs=100.4
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeC-----CCCeEEEEEeecCCCEEEEEEc------CCcEEEEe
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPH-----SNYVTCVHFNPVDDNYFISGSI------DGKVRIWA 423 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h-----~~~V~~v~fsp~~~~~l~sgs~------Dg~V~iwd 423 (686)
..+.+++|++++.++.++.+ .|.+||..+++....... ...++.++++| +++++++... .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe
Confidence 46889999999954445544 499999988875443321 24689999999 8887766543 24565566
Q ss_pred cCCCcEEEEeccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCC--CC-eeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVS--DN-HLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 424 ~~~~~~~~~~~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
+++.............++|+|||+.++++ +.++.|.+||+. ++ .+.....+.. .......+.++.+.+ ++
T Consensus 168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~---~~~~~~~p~gi~~d~-~G 241 (326)
T 2ghs_A 168 --KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID---STGIKGGMDGSVCDA-EG 241 (326)
T ss_dssp --TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE---CTTSSSEEEEEEECT-TS
T ss_pred --CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE---CCCCCCCCCeeEECC-CC
Confidence 56554444434457889999999877555 457899999986 44 3211111110 111223467888888 56
Q ss_pred CeEEEEeCCCcEEEEeCC
Q 005646 500 SKVMVSCADSQVRILQGP 517 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~ 517 (686)
.+.++...++.|.+|+..
T Consensus 242 ~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp CEEEEEETTTEEEEECTT
T ss_pred CEEEEEeCCCEEEEECCC
Confidence 666666667788888753
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.98 E-value=1.2e-07 Score=96.61 Aligned_cols=223 Identities=12% Similarity=0.128 Sum_probs=139.4
Q ss_pred cceeeecCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
|...+.++++ .+++....+.|..|+....... ...+...+.+++++++|+++++. ++.|.+||..+++
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---------RVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------EEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---------EEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc
Confidence 4455666544 4555566789999987653221 11234679999999999965553 4678999987765
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
......... ......+.+++++
T Consensus 85 ~~~~~~~~~----------------------------------------------------------~~~~~~~~di~~d 106 (297)
T 3g4e_A 85 AVVLATVDN----------------------------------------------------------DKKNNRFNDGKVD 106 (297)
T ss_dssp EEEEEECCT----------------------------------------------------------TCSSEEEEEEEEC
T ss_pred EEEEEecCC----------------------------------------------------------CCCCCCCCCEEEC
Confidence 221110000 0012346789999
Q ss_pred CCCEEEEEE-C---------CCcEEEEECCC-CeeeeEeeCCCCeEEEEEeecCCCEE-EEEEcCCcEEEEec--CCCcE
Q 005646 364 KNNYLLSAS-I---------DKTVRLWRVGN-DHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAV--LSCHV 429 (686)
Q Consensus 364 ~~~~L~s~s-~---------Dg~V~iWd~~~-~~~~~~~~h~~~V~~v~fsp~~~~~l-~sgs~Dg~V~iwd~--~~~~~ 429 (686)
|+|.|+.++ . .....||.+.. ++......+....+.++|+| +++.| ++.+.++.|.+||+ .++.+
T Consensus 107 ~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 107 PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred CCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 999333333 1 23345666553 34333344556678999999 88765 45556789999987 45543
Q ss_pred E---EEe---ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe-CCCCCeE
Q 005646 430 V---DWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-PQDSSKV 502 (686)
Q Consensus 430 ~---~~~---~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs-p~~~~~l 502 (686)
. .+. .....+..++++++|++.++....+.|..||..++++..... .+...+++++|. | +.+.|
T Consensus 186 ~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~--------~p~~~~t~~~f~g~-d~~~L 256 (297)
T 3g4e_A 186 SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK--------LPVDKTTSCCFGGK-NYSEM 256 (297)
T ss_dssp EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--------CSSSBEEEEEEESG-GGCEE
T ss_pred cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--------CCCCCceEEEEeCC-CCCEE
Confidence 2 111 223567899999999887777778889999998776543221 123568999998 6 44444
Q ss_pred EEEe
Q 005646 503 MVSC 506 (686)
Q Consensus 503 ~~~s 506 (686)
.+++
T Consensus 257 ~vt~ 260 (297)
T 3g4e_A 257 YVTC 260 (297)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 4433
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=4.9e-08 Score=101.88 Aligned_cols=172 Identities=13% Similarity=0.051 Sum_probs=112.4
Q ss_pred cCCCCeeEEEeeCCCEEEEEEC------CCcEEEEECCCCeeeeEeeC-------CCCeEEEEEeecCCCEEEEEE---c
Q 005646 352 GHSGEILDLSWSKNNYLLSASI------DKTVRLWRVGNDHCLRVFPH-------SNYVTCVHFNPVDDNYFISGS---I 415 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~~L~s~s~------Dg~V~iWd~~~~~~~~~~~h-------~~~V~~v~fsp~~~~~l~sgs---~ 415 (686)
+|...+..+++.+++.|+.+.. +..|.+||+.+++.+..+.. ...+..++++|.++..+++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3667899999999995554443 57899999999987776652 245789999983344555555 6
Q ss_pred CCcEEEEecCCCcEEEEeccC-Cc-EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEE
Q 005646 416 DGKVRIWAVLSCHVVDWVDIR-QI-VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~~~~~~~-~~-V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 493 (686)
++.|.+||+.+++.......+ .. .....+.++|..+.+.+.+|.+..|. ..+.+++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~----------------------~~~~gia 201 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH----------------------LGVNGIV 201 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC----------------------CCEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee----------------------cccceeE
Confidence 889999999988876654321 10 00133444565555555666554432 1255677
Q ss_pred EeCCCCCeEEEEeCCC-cEEEEe-------------------------CCcceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 494 FLPQDSSKVMVSCADS-QVRILQ-------------------------GPNVIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 494 fsp~~~~~l~~~s~D~-~I~iwd-------------------------~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
|+| +++.|+++..++ .|..++ ..+.+++.++|.++++...++.|.+||..++
T Consensus 202 ~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 202 LDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp ECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred ecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence 777 555555554433 333332 1235777779999999999999999998444
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.95 E-value=4.2e-08 Score=112.68 Aligned_cols=243 Identities=12% Similarity=0.109 Sum_probs=134.1
Q ss_pred ccCCceEEEEEeeCCCEEEE-----EeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 248 AHDGSILTMKFSPDGQYLAS-----AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 248 ~H~~~I~~l~fspdg~~Las-----gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
+|...+..++|||||++||- |+.+.+|++||+.+++.+... ........+.|+ ++..++.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws--------------Dg~~l~y 190 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL--------------GNEGFFY 190 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE--------------TTTEEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe--------------CCCEEEE
Confidence 46678999999999999884 333468999999998854431 111101122222 2221111
Q ss_pred Eeec----------cCCceEEEeCCccccccCCCeEEecc-CCCCeeEEEeeCCC-EE-EEEEC---CCcEEEEECCCC-
Q 005646 323 SLRR----------TSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSWSKNN-YL-LSASI---DKTVRLWRVGND- 385 (686)
Q Consensus 323 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s~~~-~L-~s~s~---Dg~V~iWd~~~~- 385 (686)
.... .....+..+....-......+..... |...+..+.|+|+| +| ++.+. +..|.+||+.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 1111 01111222211110000111222233 45567889999999 54 44442 258999999876
Q ss_pred -eeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---CcEEEEecCCCcE---EEEeccCCcEEEEEEccCCCEEEEEecCC
Q 005646 386 -HCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLSCHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMMG 458 (686)
Q Consensus 386 -~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~V~iwd~~~~~~---~~~~~~~~~V~~v~~spdg~~l~~gs~dg 458 (686)
.......+....... +++.++.+++....+ +.|..+|+.++.. ..+..+...+. .|+++++.|+....++
T Consensus 271 ~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~ 347 (693)
T 3iuj_A 271 APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD 347 (693)
T ss_dssp CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET
T ss_pred CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC
Confidence 333333466666555 566244444454443 6799999988654 45566665554 8999999888776644
Q ss_pred ---cEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC----CcEEEEeCC
Q 005646 459 ---DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD----SQVRILQGP 517 (686)
Q Consensus 459 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D----~~I~iwd~~ 517 (686)
.|++||+.++.... +. ......+..+.+++ ++..++....+ ++|..||..
T Consensus 348 g~~~l~~~d~~g~~~~~---l~-----~p~~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 348 ATARVEQFDYEGKRVRE---VA-----LPGLGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp TEEEEEEECTTSCEEEE---EC-----CSSSSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECTT
T ss_pred CeeEEEEEECCCCeeEE---ee-----cCCCceEEeeecCC-CCCEEEEEecCCCCCCEEEEEECC
Confidence 68999987554321 11 11223466677777 44444333332 566666654
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.95 E-value=2.4e-07 Score=94.41 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=124.4
Q ss_pred CCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 353 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
+..---+..|++++ ++++...++.|..||..+++. ..+.....+.+++++| +++++++ . ++.|.+||..+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEE
Confidence 44455688999954 666777789999999988765 4556678899999999 8885554 4 678999999988765
Q ss_pred EEecc-----CCcEEEEEEccCCCEEEEEecC---------CcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEe
Q 005646 431 DWVDI-----RQIVTAVCYRPDGQGGIVGSMM---------GDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFL 495 (686)
Q Consensus 431 ~~~~~-----~~~V~~v~~spdg~~l~~gs~d---------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fs 495 (686)
.+... ...++.++++|+|+++++.... ....||.+.. ++.... .. .....++++|+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----~~-----~~~~pngi~~s 157 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY----FD-----QVDISNGLDWS 157 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE----EE-----EESBEEEEEEC
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE----ee-----ccccccceEEc
Confidence 44432 2347889999999966654321 2234554432 222110 01 11346899999
Q ss_pred CCCCC-eEEEEeCCCcEEEEeCC----------------------cceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 496 PQDSS-KVMVSCADSQVRILQGP----------------------NVIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 496 p~~~~-~l~~~s~D~~I~iwd~~----------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
| +++ ++++.+.++.|.+|+.. ..+++.++|++.++...++.|.+||..+++
T Consensus 158 p-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 158 L-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp T-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred C-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 9 555 45666678889988741 124566688888888888889999988765
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.90 E-value=5.3e-07 Score=93.29 Aligned_cols=211 Identities=12% Similarity=0.024 Sum_probs=130.4
Q ss_pred cceeeecCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
+...++++++ .+++...++.|.+|+...... . .+ .+...|.+++|+++|+++++. .+ .|.+||..+++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~------~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRK--T------VH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--E------EE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--E------EE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc
Confidence 4456666644 445566678899998764321 1 11 134579999999999877765 44 48889887665
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
........ . ......+.+++++
T Consensus 121 ~~~~~~~~------------------------------------------------------~----~~~~~~~~~i~~d 142 (326)
T 2ghs_A 121 LTLHAELE------------------------------------------------------S----DLPGNRSNDGRMH 142 (326)
T ss_dssp EEEEECSS------------------------------------------------------T----TCTTEEEEEEEEC
T ss_pred EEEEeeCC------------------------------------------------------C----CCCCCCCCCEEEC
Confidence 21110000 0 0012357889999
Q ss_pred CCC-EEEEEEC------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEE-EcCCcEEEEecC--CC-cE---
Q 005646 364 KNN-YLLSASI------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG-SIDGKVRIWAVL--SC-HV--- 429 (686)
Q Consensus 364 ~~~-~L~s~s~------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sg-s~Dg~V~iwd~~--~~-~~--- 429 (686)
|+| ++++... .+.|..++ +++......+....+.++|+| +++.++.+ +.++.|.+||+. ++ .+
T Consensus 143 ~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~ 219 (326)
T 2ghs_A 143 PSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKA 219 (326)
T ss_dssp TTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCC
T ss_pred CCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCc
Confidence 999 4443322 23455555 555444334445678999999 88766544 457899999986 55 32
Q ss_pred --EEEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEe-C
Q 005646 430 --VDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-P 496 (686)
Q Consensus 430 --~~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fs-p 496 (686)
.... .....+..++++++|++.++...++.|.+||.. ++.... +. .+...+++++|. +
T Consensus 220 ~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~--i~------~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 220 EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIAR--YE------VPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEE--EE------CSCSBEEEEEEEST
T ss_pred eEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEE--EE------CCCCCcEEEEEecC
Confidence 1111 123557889999999877776667889999984 433221 11 123458999998 6
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.87 E-value=1.1e-07 Score=99.06 Aligned_cols=226 Identities=9% Similarity=0.058 Sum_probs=137.7
Q ss_pred cceeeecCCCccceeec--cceEEEEEcCCcccccccccc-CceecccCCceEEEEEeeCCCEEEEEeC-----CCcEEE
Q 005646 205 EGERVRLNEEDAMFCSK--VQRVKVYHCKKRSKELSALYK-GQEIQAHDGSILTMKFSPDGQYLASAGD-----DGVVRL 276 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~--d~~v~vw~~~~~~~~~~~~~~-~~~l~~H~~~I~~l~fspdg~~Lasgs~-----Dg~I~v 276 (686)
....+++++..+++... ++.++||.+.. . .+..... .....+|...+.+|+|+++|+++++-.. ++.|.+
T Consensus 20 ~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 20 GNITLTPDGRLFLSLHQFYQPEMQVAELTQ-D-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp EEEEECTTSCEEEEECGGGCCSCSEEEEET-T-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred ceEEECCCCCEEEEeCCCCCCceEEEEECC-C-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 33455667776666432 23256665541 1 1111110 0122356788999999999876665433 578999
Q ss_pred EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCC
Q 005646 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (686)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 356 (686)
||+.+++.+..+..+... ..+...
T Consensus 98 ~d~~tg~~~~~~~~~~~~--------------------------------------------------------~~~~~~ 121 (343)
T 2qe8_A 98 WDTLNNQLSRVIYLPPPI--------------------------------------------------------TLSNSF 121 (343)
T ss_dssp EETTTTEEEEEEECCTTT--------------------------------------------------------SCTTCC
T ss_pred EECCCCeEEEEEECChhh--------------------------------------------------------cccccc
Confidence 999888765554432110 013345
Q ss_pred eeEEEeeCC-CE-EEEEE---CCCcEEEEECCCCeeeeEee-C-----------------------------CCCeEEEE
Q 005646 357 ILDLSWSKN-NY-LLSAS---IDKTVRLWRVGNDHCLRVFP-H-----------------------------SNYVTCVH 401 (686)
Q Consensus 357 V~~l~~s~~-~~-L~s~s---~Dg~V~iWd~~~~~~~~~~~-h-----------------------------~~~V~~v~ 401 (686)
+.+++++++ +. +++-. .++.|.+||+.+++..+.+. | ...+..|+
T Consensus 122 ~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia 201 (343)
T 2qe8_A 122 VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV 201 (343)
T ss_dssp CCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE
T ss_pred cceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE
Confidence 678888875 44 44444 57889999988776655442 1 02368899
Q ss_pred EeecCCCEEEEEEcCC-cEEEEecC---CCc--------EEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCe
Q 005646 402 FNPVDDNYFISGSIDG-KVRIWAVL---SCH--------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 402 fsp~~~~~l~sgs~Dg-~V~iwd~~---~~~--------~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~ 469 (686)
|+| +++.|+.+..++ .|..++.. .+. .+...+.......++++++|+++++...++.|.+||..+++
T Consensus 202 ~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 202 LDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp ECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred ecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 999 898888888776 44444421 111 01222333456679999999999998889999999985554
Q ss_pred eeeeeeEEeeccccCCCCCeEEEEEeC
Q 005646 470 LELDAEICVHSKKKAPCKRITGFQFLP 496 (686)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~I~~l~fsp 496 (686)
.... ... .....+++++|.+
T Consensus 281 ~~~~----~~~---~~~~~p~~va~~~ 300 (343)
T 2qe8_A 281 YKLL----VTD---EKLSWTDSFNFGS 300 (343)
T ss_dssp EEEE----EEC---GGGSCEEEEEECT
T ss_pred EEEE----EEC---CceecCCeeEECC
Confidence 3211 111 1235588999988
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.87 E-value=1.6e-07 Score=96.22 Aligned_cols=225 Identities=9% Similarity=0.038 Sum_probs=141.9
Q ss_pred cceeeecCCC-ccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 205 EGERVRLNEE-DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 205 ~~~~~s~~~~-~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
+...+.++++ .+++...++.|..|+.... . ..+..+...+..++++++|+++++...++.|.+|+.. ++
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~~g~---~------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWREDGT---V------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEETTSC---E------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeCCCC---E------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 4456777887 4566677889999976321 1 2234466779999999999977666566789888864 43
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEecc-CCCCeeEEEe
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSW 362 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~ 362 (686)
.. .+. ....+ ....+.++++
T Consensus 118 ~~-~~~----------------------------------------------------------~~~~~~~~~~~~~i~~ 138 (305)
T 3dr2_A 118 AH-LLV----------------------------------------------------------GRYAGKRLNSPNDLIV 138 (305)
T ss_dssp EE-EEE----------------------------------------------------------CEETTEECSCCCCEEE
T ss_pred EE-EEE----------------------------------------------------------eccCCCccCCCCCEEE
Confidence 11 110 00000 1234677889
Q ss_pred eCCC-EEEE----EEC-------------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC------Cc
Q 005646 363 SKNN-YLLS----ASI-------------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID------GK 418 (686)
Q Consensus 363 s~~~-~L~s----~s~-------------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D------g~ 418 (686)
.++| ++++ |.. .+.|..||..+++..... .....+.++|+| +++.|+.+... +.
T Consensus 139 d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 139 ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECT-TSSEEEEEECCC---CCCE
T ss_pred CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcC-CCCEEEEEecCCcCCCCCE
Confidence 9998 5554 332 245777777666654444 445678899999 88877777665 78
Q ss_pred EEEEecCCCcEE---EEe-ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEE
Q 005646 419 VRIWAVLSCHVV---DWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (686)
Q Consensus 419 V~iwd~~~~~~~---~~~-~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~f 494 (686)
|++|++....+. .+. .....+..++++++|++ .+++.+ .|.+|+.... .... +.. + ..+..++|
T Consensus 217 i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~~g~-~~~~--~~~------~-~~~~~~~f 284 (305)
T 3dr2_A 217 ITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDSDGQ-LLGH--IPT------P-GTASNCTF 284 (305)
T ss_dssp EEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECTTSC-EEEE--EEC------S-SCCCEEEE
T ss_pred EEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECCCCC-EEEE--EEC------C-CceeEEEE
Confidence 999998765421 111 12334567899999984 444444 5999998543 2221 111 1 24888999
Q ss_pred eCCCCCeEEEEeCCCcEEE
Q 005646 495 LPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 495 sp~~~~~l~~~s~D~~I~i 513 (686)
.| +++.|.+++.++..++
T Consensus 285 ~~-d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 285 DQ-AQQRLFITGGPCLWML 302 (305)
T ss_dssp CT-TSCEEEEEETTEEEEE
T ss_pred eC-CCCEEEEEcCCeEEEE
Confidence 97 7777777777654443
No 222
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.86 E-value=2.2e-07 Score=99.06 Aligned_cols=180 Identities=10% Similarity=0.017 Sum_probs=119.7
Q ss_pred EEEeeCCC-EEEEEE----------CCCcEEEEECCCCeeeeEeeCC--------CCeEEEEEeecCCCEEEEEEc--CC
Q 005646 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFPHS--------NYVTCVHFNPVDDNYFISGSI--DG 417 (686)
Q Consensus 359 ~l~~s~~~-~L~s~s----------~Dg~V~iWd~~~~~~~~~~~h~--------~~V~~v~fsp~~~~~l~sgs~--Dg 417 (686)
.++++|++ +|+.+. .++.|.++|..+.+.+..+.-. .....++|+| ++++++++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 78999999 555554 4679999999999988877522 3456799999 9999999874 57
Q ss_pred cEEEEecCCCcEEEEeccCCcEEEEEEccCC-CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC-eEEEEEe
Q 005646 418 KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR-ITGFQFL 495 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-I~~l~fs 495 (686)
.|.+.|+.+++++..+..... ....|+| +.+++.+.||++.+.++.+++...... ........+ ...+.|.
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~----~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT----EVFHTEDELLINHPAFS 273 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC----CCCSCTTSCBCSCCEEC
T ss_pred eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee----eeeccCCCceeeEeeec
Confidence 899999999999876665443 2334443 455566677777777775554331100 000000111 1234567
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCc---------------------------ceeEcCCCCEEEEEeC----------CCcE
Q 005646 496 PQDSSKVMVSCADSQVRILQGPN---------------------------VIGKYKDGKHIVSAGE----------DSNV 538 (686)
Q Consensus 496 p~~~~~l~~~s~D~~I~iwd~~~---------------------------~~~~~~dg~~l~sgs~----------Dg~V 538 (686)
+ ++..++.....+.|.+.|... .+++++++++|+.... ++.|
T Consensus 274 ~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~V 352 (426)
T 3c75_H 274 L-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFV 352 (426)
T ss_dssp T-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEE
T ss_pred C-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEE
Confidence 7 555655556677888887521 1567778887777642 3579
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
.+.|..+.+
T Consensus 353 sVID~~T~k 361 (426)
T 3c75_H 353 VVLNAETGE 361 (426)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCe
Confidence 999998876
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.85 E-value=7.4e-07 Score=93.95 Aligned_cols=256 Identities=8% Similarity=0.006 Sum_probs=155.6
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceeccc--CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAH--DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H--~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
.++.+.+++.++.|..+|...................+ ...+.+.- ..++..|+.++.++.|..+|..+++.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 46677777888889888876543321111100000000 12232222 2245578888899999999999887554333
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~ 369 (686)
.... ....++ . .++.++
T Consensus 131 ~~~~----------------------------------------------------------~~~~p~----~-~~~~v~ 147 (376)
T 3q7m_A 131 VAGE----------------------------------------------------------ALSRPV----V-SDGLVL 147 (376)
T ss_dssp CSSC----------------------------------------------------------CCSCCE----E-ETTEEE
T ss_pred CCCc----------------------------------------------------------eEcCCE----E-ECCEEE
Confidence 2110 011111 1 245788
Q ss_pred EEECCCcEEEEECCCCeeeeEeeCCCCeE------EEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcE----
Q 005646 370 SASIDKTVRLWRVGNDHCLRVFPHSNYVT------CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV---- 439 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~------~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V---- 439 (686)
.++.++.|..+|..+++.+..+.....+. .... .+..++.+..++.|..+|..+++.+-......+.
T Consensus 148 v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 224 (376)
T 3q7m_A 148 IHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE 224 (376)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC------
T ss_pred EEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcc
Confidence 88899999999999999988877443332 2222 2457888888999999999999887444322110
Q ss_pred -E---EEEEcc--CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 440 -T---AVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 440 -~---~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
. .+...| .+..+++++.+|.+..+|..+++....... .....+... +..+++++.++.|..
T Consensus 225 ~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~----------~~~~~~~~~---~~~l~~~~~~g~l~~ 291 (376)
T 3q7m_A 225 IDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL----------GSVNDFIVD---GNRIYLVDQNDRVMA 291 (376)
T ss_dssp -----CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC----------CCEEEEEEE---TTEEEEEETTCCEEE
T ss_pred cccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC----------CCCCCceEE---CCEEEEEcCCCeEEE
Confidence 0 011112 346788888899999999998876543211 223344433 457777788888888
Q ss_pred EeCCccee-Ec-------------CCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 514 LQGPNVIG-KY-------------KDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 514 wd~~~~~~-~~-------------~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|..+... +. ..+..|+.++.+|.|+++|..+++
T Consensus 292 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 292 LTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp EETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred EECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCc
Confidence 88664321 11 045677788888888888888765
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.79 E-value=6.7e-08 Score=101.28 Aligned_cols=248 Identities=10% Similarity=0.011 Sum_probs=152.0
Q ss_pred eEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEe----------CCCcEEEEEeecCeeeeeeccCCC
Q 005646 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPEI 293 (686)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~vWd~~~~~~~~~~~~~~~ 293 (686)
+|.|.|..+... ..++.....+ .+.|+|||++|+.+. .++.|.+||+.+++.+..+..+..
T Consensus 47 ~vsvID~~t~~v-------~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVT-------LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEE-------EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred eEEEEECCCCeE-------EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence 778887665432 1233333445 799999999998886 368999999999987766543210
Q ss_pred CCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEE
Q 005646 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (686)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s 372 (686)
. +.. .......++++|+| +|+.+.
T Consensus 118 ~-----------------------------------------------------~~~--~g~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 118 P-----------------------------------------------------RFS--VGPRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp C-----------------------------------------------------SCC--BSCCTTSEEECTTSSCEEEEE
T ss_pred c-----------------------------------------------------ccc--cCCCcceEEEcCCCCEEEEEc
Confidence 0 000 01234578999999 777776
Q ss_pred C--CCcEEE--EECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC-----CcEEE----Eec-cCCc
Q 005646 373 I--DKTVRL--WRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-----CHVVD----WVD-IRQI 438 (686)
Q Consensus 373 ~--Dg~V~i--Wd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~-----~~~~~----~~~-~~~~ 438 (686)
. +..|.+ +|+.+ +..+.-.+. +.+.|.....+++.+.||++.+.|+.+ ++++. ... ...+
T Consensus 143 ~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 143 FGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp CSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred cCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 4 467888 99877 455542221 234453456677778899999999987 44331 111 1223
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc-ccCC---CCCeEEEEEeCCCCCeEEEEeC-------
Q 005646 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK-KKAP---CKRITGFQFLPQDSSKVMVSCA------- 507 (686)
Q Consensus 439 V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~---~~~I~~l~fsp~~~~~l~~~s~------- 507 (686)
. . .+++..++..+. +.+.+.|+..........+.+... ...+ ......+.|+| +++.++++..
T Consensus 217 ~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 217 A---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCL 290 (368)
T ss_dssp E---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTT
T ss_pred c---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCccc
Confidence 3 3 666666666666 999999997543222111111000 0000 01112268999 5666665432
Q ss_pred --CCcEEEEeCCc--------------ceeEcCCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005646 508 --DSQVRILQGPN--------------VIGKYKDGK-HIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 508 --D~~I~iwd~~~--------------~~~~~~dg~-~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
++.+.++|..+ .+.+++||+ .+++.. .++.|.++|+.+.+
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 24566999753 377889998 556666 59999999999876
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.77 E-value=8.8e-10 Score=116.51 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=79.0
Q ss_pred CCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccc
Q 005646 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340 (686)
Q Consensus 261 dg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (686)
++..|++++.|+.|+.||..+|+.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------- 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------- 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence 577899999999999999999885544331
Q ss_pred cccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCC--CCeEE-EEEeecCCCEEEEEEcC
Q 005646 341 RILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS--NYVTC-VHFNPVDDNYFISGSID 416 (686)
Q Consensus 341 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~--~~V~~-v~fsp~~~~~l~sgs~D 416 (686)
+.+.+..+..++ .+++++.|+.|+.||..+++.+..+... ..+.+ ..+. .+..+++|+.|
T Consensus 38 --------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~d 101 (369)
T 2hz6_A 38 --------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQ 101 (369)
T ss_dssp --------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEE
T ss_pred --------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCC
Confidence 112222233455 6777789999999999999887766521 11110 0111 34578888999
Q ss_pred CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 417 g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
+.|+.||..+++.+....... ...++|++..+++++.++.|+.||..+++....
T Consensus 102 g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 102 DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp EEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred CEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 999999999998874443332 245667888999999999999999998876543
No 226
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.72 E-value=1.2e-06 Score=92.38 Aligned_cols=234 Identities=13% Similarity=0.172 Sum_probs=145.1
Q ss_pred cCCCcc-ceeeccceEEEEEcCCcc--ccccccccCceec--ccCCceEEEEEeeCCCEEEEEeCC------CcEEEEEe
Q 005646 211 LNEEDA-MFCSKVQRVKVYHCKKRS--KELSALYKGQEIQ--AHDGSILTMKFSPDGQYLASAGDD------GVVRLWQV 279 (686)
Q Consensus 211 ~~~~~l-~~g~~d~~v~vw~~~~~~--~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~Lasgs~D------g~I~vWd~ 279 (686)
.+.+++ +.+-.+++|.|.|..... ..+.+.....++. .....-..+..+|+| +++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 445544 557778999999986432 2222221111111 111245567888999 66666555 67999998
Q ss_pred ecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeE
Q 005646 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 359 (686)
.+.+.+..+..... -..--.+
T Consensus 172 ~T~~v~~~~~~~~~-----------------------------------------------------------~~~~~Yd 192 (462)
T 2ece_A 172 YSFEPLGKWEIDRG-----------------------------------------------------------DQYLAYD 192 (462)
T ss_dssp TTCCEEEECCSBCT-----------------------------------------------------------TCCCCCC
T ss_pred CCCeEEEEEccCCC-----------------------------------------------------------Cccccce
Confidence 88776555432110 1112246
Q ss_pred EEeeCCC-EEEEEE-------------------CCCcEEEEECCCCeeeeEeeCC---CCeEEEEE--eecCCCEEEEEE
Q 005646 360 LSWSKNN-YLLSAS-------------------IDKTVRLWRVGNDHCLRVFPHS---NYVTCVHF--NPVDDNYFISGS 414 (686)
Q Consensus 360 l~~s~~~-~L~s~s-------------------~Dg~V~iWd~~~~~~~~~~~h~---~~V~~v~f--sp~~~~~l~sgs 414 (686)
+-|+|++ .++++. .+.+|.+||+.+++.+.++.-. .....|.| +| +++++++++
T Consensus 193 ~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~ 271 (462)
T 2ece_A 193 FWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-TKLMGFINM 271 (462)
T ss_dssp EEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-TCCEEEEEE
T ss_pred EEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-CCCEEEEEE
Confidence 7788888 666664 4789999999999888888743 34455656 99 888877776
Q ss_pred ------cCCcEEEEecCCCcE-----EEEecc----------------CCcEEEEEEccCCCEEEEEec-CCcEEEEeCC
Q 005646 415 ------IDGKVRIWAVLSCHV-----VDWVDI----------------RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS 466 (686)
Q Consensus 415 ------~Dg~V~iwd~~~~~~-----~~~~~~----------------~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~ 466 (686)
.+++|.+|....+.. +..... ...+..|.++|||++|.++.. .+.|.+||+.
T Consensus 272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 567888776655432 111110 244788999999999988776 6889999986
Q ss_pred C-CeeeeeeeEEeeccc--------cCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 467 D-NHLELDAEICVHSKK--------KAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 467 ~-~~~~~~~~~~~~~~~--------~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
. .++.....+...+.. ..-...-..++++| ++++|+++.
T Consensus 352 d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 352 NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 3 333333333332210 00012357899999 777777775
No 227
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=2.3e-06 Score=84.80 Aligned_cols=202 Identities=7% Similarity=-0.037 Sum_probs=132.5
Q ss_pred ceEEEEEeeCCCEEEEEeC--CCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 252 SILTMKFSPDGQYLASAGD--DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~--Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
....|.|++++.+.++.+. ++.|++.|+.+++.+..+....
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~------------------------------------- 64 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD------------------------------------- 64 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------------------------------------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------------------------------------
Confidence 3679999998765555553 5799999999998666544211
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCC-CCeEEEEEeecCCC
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHS-NYVTCVHFNPVDDN 408 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~-~~V~~v~fsp~~~~ 408 (686)
+ .....+++..+...++.-.++.|.++|..+.+.+..+... .. ...+++ +++
T Consensus 65 -----------------------~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~ 117 (266)
T 2iwa_A 65 -----------------------S-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGK 117 (266)
T ss_dssp -----------------------T-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSS
T ss_pred -----------------------C-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCC
Confidence 1 1112455543224444456899999999999999998744 22 344666 666
Q ss_pred EEEEEEcCCcEEEEecCCCcEEEEeccCC------cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee---
Q 005646 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQ------IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH--- 479 (686)
Q Consensus 409 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~------~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~--- 479 (686)
.++++..+++|.++|..+.+.+..+.... .++.+.|. +|+.++....++.|.+.|..+++......+...
T Consensus 118 ~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~ 196 (266)
T 2iwa_A 118 ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKK 196 (266)
T ss_dssp SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 66666678999999999988775554321 36778888 776555555688999999999887654332110
Q ss_pred --ccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 005646 480 --SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDG-KHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 480 --~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg-~~l~sgs~Dg~V~iWd~~~~ 546 (686)
..........++++|+| ++ ++++++...+.|++-++...
T Consensus 197 ~~~~~~~~~~v~nGIa~~~----------------------------~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 197 LIDEGFRDIDVLNGIAWDQ----------------------------ENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HHHTTCTTCCCEEEEEEET----------------------------TTTEEEEEETTCSEEEEEEEEEC
T ss_pred cccccccccCceEEEEEcC----------------------------CCCEEEEECCCCCeEEEEEEecc
Confidence 00111224568899998 43 34445556677777776553
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.68 E-value=1e-05 Score=85.04 Aligned_cols=253 Identities=10% Similarity=0.062 Sum_probs=154.4
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~ 289 (686)
...++.+++++.++.|..+|.............. . ....++ . .+..++.++.++.|..+|..+++.+....
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~--~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-E--ALSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECSS-C--CCSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-c--eEcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence 3456778888888999999876543321111000 0 011111 1 14478888899999999999888655443
Q ss_pred cCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEE
Q 005646 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (686)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~ 369 (686)
... +...+.+...++. . ++.++
T Consensus 171 ~~~-----------------------------------------------------~~~~~~~~~~~~~----~-~~~v~ 192 (376)
T 3q7m_A 171 LDM-----------------------------------------------------PSLSLRGESAPTT----A-FGAAV 192 (376)
T ss_dssp CCC----------------------------------------------------------CCCCCCEE----E-TTEEE
T ss_pred CCC-----------------------------------------------------CceeecCCCCcEE----E-CCEEE
Confidence 211 0001111122211 1 45778
Q ss_pred EEECCCcEEEEECCCCeeeeEeeCCCCe-----E---EEEEee-cCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEE
Q 005646 370 SASIDKTVRLWRVGNDHCLRVFPHSNYV-----T---CVHFNP-VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT 440 (686)
Q Consensus 370 s~s~Dg~V~iWd~~~~~~~~~~~h~~~V-----~---~v~fsp-~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~ 440 (686)
.++.++.|..+|..+++.+..+....+- . .+.-.| ..+..++.++.++.|..+|..+++.+-..... ...
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~ 271 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-SVN 271 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-CEE
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-CCC
Confidence 8888999999999999988877632110 0 010111 13567888888999999999999877444332 334
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcce
Q 005646 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520 (686)
Q Consensus 441 ~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~ 520 (686)
.+.. ++..+++++.+|.+..+|..+++...... . .....+...... +..|++++.++.|..+|..+..
T Consensus 272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~----~---~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 272 DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS----D---LLHRLLTSPVLY---NGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC----T---TTTSCCCCCEEE---TTEEEEECTTSEEEEEETTTCC
T ss_pred CceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec----c---cCCCcccCCEEE---CCEEEEEeCCCeEEEEECCCCc
Confidence 4433 46688888899999999999887654221 0 011112222232 3678888899999999976531
Q ss_pred eE--c------------CCCCEEEEEeCCCcEEEEe
Q 005646 521 GK--Y------------KDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 521 ~~--~------------~dg~~l~sgs~Dg~V~iWd 542 (686)
.. . ..+..|+.++.||.|+.|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 340 FVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 11 0 0456778888999999886
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.68 E-value=2.8e-09 Score=112.59 Aligned_cols=250 Identities=8% Similarity=0.020 Sum_probs=127.9
Q ss_pred CCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 212 ~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
+++.+++++.++.|..||......... +.. +.+.+..+..++..+++++.|+.|+.||..+++.+..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~-------~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT-------LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE-------EEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE-------ecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 567888999999999999765543211 111 34555556667878888889999999999888744332210
Q ss_pred CCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEE
Q 005646 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA 371 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~ 371 (686)
.. .. ....++. ..++.|+++
T Consensus 79 ~~---------------------------------------------------~~-----~~~sp~~----~~~~~v~~g 98 (369)
T 2hz6_A 79 IP---------------------------------------------------EL-----VQASPCR----SSDGILYMG 98 (369)
T ss_dssp HH---------------------------------------------------HH-----HTTCSCC---------CCCC
T ss_pred Cc---------------------------------------------------cc-----cccCceE----ecCCEEEEE
Confidence 00 00 0011111 123477788
Q ss_pred ECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCcEEEEEEccCC---
Q 005646 372 SIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDG--- 448 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg--- 448 (686)
+.|+.|+.||..+++.+..+.... ...++| ++..+++++.|+.|+.||..+++.+-...... ....++.++.
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~ 173 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF---ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYK 173 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCC
T ss_pred eCCCEEEEEECCCCcEEEEecCCC---cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCcccc
Confidence 889999999999999988877333 245677 78899999999999999999998653222111 1223333432
Q ss_pred CEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEE-EEEeCCCCCeEEE--EeCCCcEEEEeCCcce-----
Q 005646 449 QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG-FQFLPQDSSKVMV--SCADSQVRILQGPNVI----- 520 (686)
Q Consensus 449 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~-l~fsp~~~~~l~~--~s~D~~I~iwd~~~~~----- 520 (686)
..+++++.+|.++.||..+++...... ...++.. ..+++ ++...+. ...++.++.+|..+..
T Consensus 174 ~~v~~~~~dg~v~a~d~~tG~~~W~~~---------~~~pv~~~~~~~~-dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~ 243 (369)
T 2hz6_A 174 MSHFVSNGDGLVVTVDSESGDVLWIQN---------YASPVVAFYVWQR-EGLRKVMHINVAVETLRYLTFMSGEVGRIT 243 (369)
T ss_dssp CCEEEEETSCEEEEECTTTCCEEEEEE---------CSSCEEEEEECTT-SSCEEECCEEEEHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCEEEEEECCCCcEEEEec---------CCCceEEEEEecC-CceEeccceeecccceeeeehhcCCcccce
Confidence 567788899999999999887654322 1123333 22333 3221100 0012333444432211
Q ss_pred eE---------cC--CCCEEEEEeCCCcEEEEeCCC
Q 005646 521 GK---------YK--DGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 521 ~~---------~~--dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
.| +| .+..|+.++.||.|+..+...
T Consensus 244 ~W~~~~~~~~~sp~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 244 KWKYPFPKETEAKSKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp TSCCCCCCHHHHHHHSEEEECBEECSSCEECCEEEE
T ss_pred eeeeccCccccccccccceEEEecccCCEEecCccc
Confidence 11 11 346788889999999998764
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.66 E-value=1.7e-06 Score=98.82 Aligned_cols=173 Identities=12% Similarity=0.079 Sum_probs=114.7
Q ss_pred CCCcEEEEECCCCeeeeEeeCC--C------------------------------CeEEEEEeecCCCEEEEEEcCCc--
Q 005646 373 IDKTVRLWRVGNDHCLRVFPHS--N------------------------------YVTCVHFNPVDDNYFISGSIDGK-- 418 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~h~--~------------------------------~V~~v~fsp~~~~~l~sgs~Dg~-- 418 (686)
.++.|..||..+++.+..+... . ....++++| +.++++.+..++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w 259 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLW 259 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCcc
Confidence 3789999999999998877521 0 112578888 7888999888764
Q ss_pred -----------------EEEEecCCCcEEEEecc---C-------CcEEEEEEccCCC---EEEEEecCCcEEEEeCCCC
Q 005646 419 -----------------VRIWAVLSCHVVDWVDI---R-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 419 -----------------V~iwd~~~~~~~~~~~~---~-------~~V~~v~~spdg~---~l~~gs~dg~i~iwd~~~~ 468 (686)
|..||..+++.+-.... . .++.......+|+ .++.++.+|.++++|..++
T Consensus 260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG 339 (689)
T ss_dssp CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence 99999999998743321 1 1222223334675 7889999999999999999
Q ss_pred eeeeeeeEEee-----------------cc---ccC-----------CCCCeEEEEEeCCCCCeEEEEeC----------
Q 005646 469 HLELDAEICVH-----------------SK---KKA-----------PCKRITGFQFLPQDSSKVMVSCA---------- 507 (686)
Q Consensus 469 ~~~~~~~~~~~-----------------~~---~~~-----------~~~~I~~l~fsp~~~~~l~~~s~---------- 507 (686)
+++....+... .. ... -...-..++|+| +..++++...
T Consensus 340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCS
T ss_pred CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeecc
Confidence 87632211000 00 000 000122367888 4455555421
Q ss_pred -----------------------------------CCcEEEEeCCcce--------------eEcCCCCEEEEEeCCCcE
Q 005646 508 -----------------------------------DSQVRILQGPNVI--------------GKYKDGKHIVSAGEDSNV 538 (686)
Q Consensus 508 -----------------------------------D~~I~iwd~~~~~--------------~~~~dg~~l~sgs~Dg~V 538 (686)
++.|+.||..+.. .+...+.+++.|+.||.|
T Consensus 419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEE
T ss_pred ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcE
Confidence 3779999987542 222377899999999999
Q ss_pred EEEeCCCCC
Q 005646 539 YMWNCIGHE 547 (686)
Q Consensus 539 ~iWd~~~~~ 547 (686)
+.||..+++
T Consensus 499 ~a~D~~tG~ 507 (689)
T 1yiq_A 499 IAYAADTGE 507 (689)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 999999987
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.66 E-value=1.3e-06 Score=99.64 Aligned_cols=172 Identities=8% Similarity=-0.001 Sum_probs=115.9
Q ss_pred CCcEEEEECCCCeeeeEeeCCCC---------------------------------eEEEEEeecCCCEEEEEEcCC---
Q 005646 374 DKTVRLWRVGNDHCLRVFPHSNY---------------------------------VTCVHFNPVDDNYFISGSIDG--- 417 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~h~~~---------------------------------V~~v~fsp~~~~~l~sgs~Dg--- 417 (686)
++.|+.+|..+++.+..+..... ...++++| +.++++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 78999999999999887762111 13578888 788888887664
Q ss_pred ----------------cEEEEecCCCcEEEEecc--C--------CcEEEEEEccCC---CEEEEEecCCcEEEEeCCCC
Q 005646 418 ----------------KVRIWAVLSCHVVDWVDI--R--------QIVTAVCYRPDG---QGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 418 ----------------~V~iwd~~~~~~~~~~~~--~--------~~V~~v~~spdg---~~l~~gs~dg~i~iwd~~~~ 468 (686)
.|..+|..+++.+-.+.. . ....-+....+| ..+++++.+|.++++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 499999999998743321 1 122334444578 68899999999999999999
Q ss_pred eeeeeeeEEeecc---ccCCCC------------------------CeEEEEEeCCCCCeEEEEeC--------------
Q 005646 469 HLELDAEICVHSK---KKAPCK------------------------RITGFQFLPQDSSKVMVSCA-------------- 507 (686)
Q Consensus 469 ~~~~~~~~~~~~~---~~~~~~------------------------~I~~l~fsp~~~~~l~~~s~-------------- 507 (686)
+++.......... ...... .-..++|+| +..++++...
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~ 426 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEF 426 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeeccccccc
Confidence 8765332110000 000000 012568888 5556665432
Q ss_pred -----------------------------CCcEEEEeCCcce--------------eEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 508 -----------------------------DSQVRILQGPNVI--------------GKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 508 -----------------------------D~~I~iwd~~~~~--------------~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.+.|..||..+.. .+..++.+++.++.||.+++||..
T Consensus 427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 2778899976531 223377888999999999999999
Q ss_pred CCC
Q 005646 545 GHE 547 (686)
Q Consensus 545 ~~~ 547 (686)
+++
T Consensus 507 tG~ 509 (677)
T 1kb0_A 507 TGE 509 (677)
T ss_dssp TCC
T ss_pred CCc
Confidence 987
No 232
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.64 E-value=1.8e-06 Score=98.95 Aligned_cols=237 Identities=9% Similarity=0.040 Sum_probs=140.6
Q ss_pred eeeecCCCccce-----eeccceEEEEEcCCccccccccccCceecccCCc--eEEEEEeeCCCEEEEEeCCCc------
Q 005646 207 ERVRLNEEDAMF-----CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGS--ILTMKFSPDGQYLASAGDDGV------ 273 (686)
Q Consensus 207 ~~~s~~~~~l~~-----g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~--I~~l~fspdg~~Lasgs~Dg~------ 273 (686)
.++++++++++. |+....|+|||+...... ..+... ...++|+ ||+.|+.++.+..
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~----------~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL----------ETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE----------EEEEEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC----------ccccCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 367888888873 444578999998765321 111112 3567899 9999999988744
Q ss_pred -------EEEEEeecCeeee--eeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccC-CceEEEeCCcccccc
Q 005646 274 -------VRLWQVVEDERLT--EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS-ESACVVFPPKVFRIL 343 (686)
Q Consensus 274 -------I~vWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 343 (686)
|++|++.++.... .+..... +......+.+++++..++....... ...+.+++...-
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~----------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~--- 269 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPA----------QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE--- 269 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGG----------GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST---
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCC----------CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC---
Confidence 8999987654211 1111110 0111223344555544433332222 223333332210
Q ss_pred CCCeEEeccCCCCeeEEEeeCCC--EEEEEECC---CcEEEEECCCCee---eeEeeCCCCeEEEEEeecCCCEEEEEEc
Q 005646 344 EKPLHEFHGHSGEILDLSWSKNN--YLLSASID---KTVRLWRVGNDHC---LRVFPHSNYVTCVHFNPVDDNYFISGSI 415 (686)
Q Consensus 344 ~~~~~~l~~h~~~V~~l~~s~~~--~L~s~s~D---g~V~iWd~~~~~~---~~~~~h~~~V~~v~fsp~~~~~l~sgs~ 415 (686)
......+..+....... |++++ +++....+ +.|.++|+.++.. .....|...+. .|+| +++.|+....
T Consensus 270 ~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~~~~ 345 (693)
T 3iuj_A 270 NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFAEYM 345 (693)
T ss_dssp TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEEEEE
T ss_pred CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEEEEE
Confidence 11345566666666555 55555 44444443 6799999988765 33344666655 8899 7777766655
Q ss_pred -CC--cEEEEecCCCcEEEEe-ccCCcEEEEEEccCCCEEEEEecC----CcEEEEeCCCCeee
Q 005646 416 -DG--KVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMM----GDCRFYNVSDNHLE 471 (686)
Q Consensus 416 -Dg--~V~iwd~~~~~~~~~~-~~~~~V~~v~~spdg~~l~~gs~d----g~i~iwd~~~~~~~ 471 (686)
++ .|++||+.++...... .....+..+.++|+++.++....+ ++++.||+.+++..
T Consensus 346 ~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 346 VDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp ETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred ECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 44 6899998866543332 234567778888998887776555 88999999876543
No 233
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.49 E-value=1.6e-05 Score=77.90 Aligned_cols=187 Identities=12% Similarity=0.088 Sum_probs=121.3
Q ss_pred eEEEEEeeCCCEEEEEeCCC--cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCc
Q 005646 253 ILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (686)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (686)
...|.|+ ++.+..+.|.+| .|+++|+.+++.+..+.....
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~------------------------------------- 86 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR------------------------------------- 86 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------------------------------------
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------------------------------------
Confidence 4788998 777777878776 899999999987665543210
Q ss_pred eEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEE
Q 005646 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l 410 (686)
..--.++...+...+..-.++.+.++|..+.+.+..+.....=..++ + ++..|
T Consensus 87 ------------------------~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L 139 (262)
T 3nol_A 87 ------------------------YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYL 139 (262)
T ss_dssp ------------------------CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCE
T ss_pred ------------------------cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEE
Confidence 01112333322233334468899999999999999998544323344 5 66666
Q ss_pred EEEEcCCcEEEEecCCCcEEEEeccC------CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc---
Q 005646 411 ISGSIDGKVRIWAVLSCHVVDWVDIR------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK--- 481 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~~~~~~~------~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~--- 481 (686)
+.+..+++|.++|..+.+++..+... ..++.+.|. +|+..+..-.++.|.+.|..+++......+.....
T Consensus 140 ~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~ 218 (262)
T 3nol_A 140 IMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG 218 (262)
T ss_dssp EECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC
T ss_pred EEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc
Confidence 66666788999999999887655432 234557776 77655555568899999999998765443321110
Q ss_pred -ccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 482 -KKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 482 -~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
......-.++|+|+| +.+.|++++
T Consensus 219 ~~~~~~~vlNGIA~dp-~~~~lfVTG 243 (262)
T 3nol_A 219 PLPSPIDVLNGIAWDK-EHHRLFVTG 243 (262)
T ss_dssp SCCSSCCCEEEEEEET-TTTEEEEEE
T ss_pred cccCcCCceEEEEEcC-CCCEEEEEC
Confidence 011234578899999 444444444
No 234
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.49 E-value=1.2e-05 Score=78.74 Aligned_cols=185 Identities=10% Similarity=0.025 Sum_probs=122.8
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceE
Q 005646 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (686)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (686)
...|.|+ ++.+..+.|.+|.|+++|+.+++.+..+ ....
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~--------------------------------------- 95 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN--------------------------------------- 95 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT---------------------------------------
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC---------------------------------------
Confidence 4688887 4677788888999999999998855443 2110
Q ss_pred EEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEE
Q 005646 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS 412 (686)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~s 412 (686)
..--.+++..+...+..-.++.+.+||..+.+.+..+.....-..++ + ++..|+.
T Consensus 96 ----------------------~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~-Dg~~L~v 150 (268)
T 3nok_A 96 ----------------------IFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--Y-WNGKLVR 150 (268)
T ss_dssp ----------------------CCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--E-ETTEEEE
T ss_pred ----------------------cceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--c-CCCEEEE
Confidence 01122444333344445578999999999999999998544434454 4 6677777
Q ss_pred EEcCCcEEEEecCCCcEEEEeccCC------cEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc-----
Q 005646 413 GSIDGKVRIWAVLSCHVVDWVDIRQ------IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----- 481 (686)
Q Consensus 413 gs~Dg~V~iwd~~~~~~~~~~~~~~------~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~----- 481 (686)
+..+++|.++|..+.+++..+.... .++.+.|. +|+.++..-.++.|.+.|..+++......+.....
T Consensus 151 SdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~ 229 (268)
T 3nok_A 151 SDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQ 229 (268)
T ss_dssp ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTT
T ss_pred ECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccc
Confidence 7778999999999998876554322 35667776 77655555568899999999998765443321100
Q ss_pred ccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 482 KKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 482 ~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
......-.++|++.|+ .+.|+++
T Consensus 230 ~~~~~~vlNGIA~dp~-~~rlfVT 252 (268)
T 3nok_A 230 VTNPEAVLNGIAVEPG-SGRIFMT 252 (268)
T ss_dssp CCCTTCCEEEEEECTT-TCCEEEE
T ss_pred ccCcCCceEEEEEcCC-CCEEEEe
Confidence 1112345789999994 3334333
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.47 E-value=5.7e-06 Score=90.35 Aligned_cols=169 Identities=10% Similarity=0.009 Sum_probs=117.1
Q ss_pred CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC------------------------------------
Q 005646 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG------------------------------------ 417 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg------------------------------------ 417 (686)
++.+.+.|..+.+.+..+.-.+....++++| +++++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 4578899999998888887433567788999 888888888553
Q ss_pred --cEEEEecCC--CcE-EEEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCee------eeeeeEEeeccccCC
Q 005646 418 --KVRIWAVLS--CHV-VDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHL------ELDAEICVHSKKKAP 485 (686)
Q Consensus 418 --~V~iwd~~~--~~~-~~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~ 485 (686)
.|.+.|..+ ++. +..+.......++.++|||+++++++ .+.+|.++|+.+.+. .....+.. ...-
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~---~v~v 329 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA---EPEL 329 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE---CCBC
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE---EcCC
Confidence 477777776 444 44555555667899999999888765 478899999985421 11111110 1122
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcc------------------------------eeEcCCCCEEEEEeC-
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------------------------------IGKYKDGKHIVSAGE- 534 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~------------------------------~~~~~dg~~l~sgs~- 534 (686)
......++|+| ++...++...|++|.+||.... +.+.+||++|+++..
T Consensus 330 G~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 330 GLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp CSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred CCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 35588999999 5566667778999999995431 134569999999863
Q ss_pred --CCc----------EEEEeCCCCC
Q 005646 535 --DSN----------VYMWNCIGHE 547 (686)
Q Consensus 535 --Dg~----------V~iWd~~~~~ 547 (686)
|+. -.++|+.+++
T Consensus 409 skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 409 SKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CccccccCCCCCCCcceEEEcCCCc
Confidence 443 2888986554
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.45 E-value=8.3e-06 Score=92.96 Aligned_cols=266 Identities=8% Similarity=0.018 Sum_probs=152.9
Q ss_pred ecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC------CCcEEEEEeecCe
Q 005646 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD------DGVVRLWQVVEDE 283 (686)
Q Consensus 210 s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~------Dg~I~vWd~~~~~ 283 (686)
...++.+++++.++.+..+|..+......... ..... +...+.+--...++ .++.++. ++.|+.+|..+|+
T Consensus 125 a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~-~~~~~-~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 125 ALWKGKVYVGAWDGRLIALDAATGKEVWHQNT-FEGQK-GSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEET-TTTCC-SSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeeecC-CcCcC-cCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCc
Confidence 34667788888899999998865443221110 00000 00111111111234 4555443 7999999999999
Q ss_pred eeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEee
Q 005646 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (686)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 363 (686)
.+-.+.............. . .... ...|... .......+.......+++.
T Consensus 202 ~~W~~~~~~~~~~~~~~~~-------------~-------~~~g---------~~~w~~~-g~~~~~~~g~~~w~~~~~d 251 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDE-------------S-------MKRA---------ARTWDPS-GKWWEAGGGGTMWDSMTFD 251 (677)
T ss_dssp EEEEEESSCCCTTSCCSSH-------------H-------HHHH---------HTTSCGG-GCHHHHCEECCCCSCEEEE
T ss_pred EEEEeccCCCCcccccccc-------------c-------cccc---------ccccccc-CceeEeCCCcccccceeEc
Confidence 8776654322110000000 0 0000 0000000 0000000122233467778
Q ss_pred CCC-EEEEEECCC-------------------cEEEEECCCCeeeeEee---CC-------CCeEEEEEeecCC---CEE
Q 005646 364 KNN-YLLSASIDK-------------------TVRLWRVGNDHCLRVFP---HS-------NYVTCVHFNPVDD---NYF 410 (686)
Q Consensus 364 ~~~-~L~s~s~Dg-------------------~V~iWd~~~~~~~~~~~---h~-------~~V~~v~fsp~~~---~~l 410 (686)
+++ +|+.++.++ .|..+|..+++.+..+. |. ....-+.... ++ ..+
T Consensus 252 ~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l 330 (677)
T 1kb0_A 252 AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVI 330 (677)
T ss_dssp TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEE
Confidence 876 777666553 59999999999998876 21 1223334444 66 689
Q ss_pred EEEEcCCcEEEEecCCCcEEEEeccC------------CcE------------------------EEEEEccCCCEEEEE
Q 005646 411 ISGSIDGKVRIWAVLSCHVVDWVDIR------------QIV------------------------TAVCYRPDGQGGIVG 454 (686)
Q Consensus 411 ~sgs~Dg~V~iwd~~~~~~~~~~~~~------------~~V------------------------~~v~~spdg~~l~~g 454 (686)
+.++.+|.|+++|..+++++...... .++ ..++|+|++.++++.
T Consensus 331 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~ 410 (677)
T 1kb0_A 331 LHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLP 410 (677)
T ss_dssp EECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEE
T ss_pred EEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEe
Confidence 99999999999999999987433211 011 146889998888886
Q ss_pred ecC-------------------------------------------CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEE
Q 005646 455 SMM-------------------------------------------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG 491 (686)
Q Consensus 455 s~d-------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~ 491 (686)
..+ |.|..||+.+++....... ..++.+
T Consensus 411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---------~~~~~~ 481 (677)
T 1kb0_A 411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---------VSPWNG 481 (677)
T ss_dssp EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---------SSSCCC
T ss_pred ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---------CCCCcC
Confidence 442 7899999999987654332 122334
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 492 FQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 492 l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
..+.. .+.++++++.|+.+++||..+.
T Consensus 482 g~~~~-~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 482 GTLTT-AGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp CEEEE-TTTEEEEECTTSEEEEEETTTC
T ss_pred cceEe-CCCEEEEECCCCcEEEEECCCC
Confidence 44555 5678888999999999997753
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.39 E-value=0.00011 Score=73.23 Aligned_cols=184 Identities=8% Similarity=0.024 Sum_probs=115.8
Q ss_pred CeeEEEeeCCC-EEE-EEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 356 EILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
.+..++|++++ .|+ +-...+.|..+++........+. .......++++|..+.++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 46789999865 444 55567899999998765443333 2357899999983344555555678999999875443333
Q ss_pred eccC-CcEEEEEEccCCCEEEEEec---CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 433 VDIR-QIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 433 ~~~~-~~V~~v~~spdg~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.... .....++++|++..|+++.. .+.|..+++....... +. ........+++++|+++.++++....
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~-----~~---~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-----LA---QDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-----EE---CTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE-----EE---ECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 3222 45789999997666665554 3688888886433211 10 01224578999999545555666677
Q ss_pred CcEEEEeCCcce------------eEcCCCCEEEEEe-CCCcEEEEeCCCCC
Q 005646 509 SQVRILQGPNVI------------GKYKDGKHIVSAG-EDSNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~~~~------------~~~~dg~~l~sgs-~Dg~V~iWd~~~~~ 547 (686)
+.|.+++..... ....++.+|..+. ..+.|.++|..+++
T Consensus 189 ~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCC
Confidence 899999865310 1111344444443 45678878777654
No 238
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.38 E-value=9.8e-05 Score=71.67 Aligned_cols=179 Identities=9% Similarity=0.032 Sum_probs=117.9
Q ss_pred ceEEEEEeeCCCEEEEEeCCC--cEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCC
Q 005646 252 SILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (686)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (686)
-...+.|++ +.+..+.|.+| .|+++|+.+++.+..+..+...
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~----------------------------------- 65 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY----------------------------------- 65 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-----------------------------------
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-----------------------------------
Confidence 466899986 66677777754 8999999999876655432210
Q ss_pred ceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCE
Q 005646 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409 (686)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~ 409 (686)
.--.++...+......-.++.+.+||..+.+.+.++.....=..++ + ++..
T Consensus 66 --------------------------fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~~ 116 (243)
T 3mbr_X 66 --------------------------FGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDSH 116 (243)
T ss_dssp --------------------------CEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSSC
T ss_pred --------------------------ceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCCE
Confidence 0012333332233344568999999999999999998554434454 4 5666
Q ss_pred EEEEEcCCcEEEEecCCCcEEEEeccC------CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeec-cc
Q 005646 410 FISGSIDGKVRIWAVLSCHVVDWVDIR------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS-KK 482 (686)
Q Consensus 410 l~sgs~Dg~V~iwd~~~~~~~~~~~~~------~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~-~~ 482 (686)
|+.+..+++|.++|..+.+++..+... ..++.+.|. +|+.++..-.+..|.+.|..+++......+.... ..
T Consensus 117 L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~ 195 (243)
T 3mbr_X 117 LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA 195 (243)
T ss_dssp EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT
T ss_pred EEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc
Confidence 666667899999999999887655432 245566665 6765555546889999999999876543322111 00
Q ss_pred ----cCCCCCeEEEEEeC
Q 005646 483 ----KAPCKRITGFQFLP 496 (686)
Q Consensus 483 ----~~~~~~I~~l~fsp 496 (686)
.....-.++|++.|
T Consensus 196 ~~~~~~~~~vlNGIA~d~ 213 (243)
T 3mbr_X 196 DALTDSTNDVLNGIAFDA 213 (243)
T ss_dssp TSCCCTTSSCEEEEEEET
T ss_pred ccccCCcCCceEEEEEcC
Confidence 11234568899998
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.36 E-value=3.8e-05 Score=76.06 Aligned_cols=155 Identities=6% Similarity=0.029 Sum_probs=105.3
Q ss_pred CeeEEEeeCCCEEEEE-EC--CCcEEEEECCCCeeeeEeeCCC--CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 356 EILDLSWSKNNYLLSA-SI--DKTVRLWRVGNDHCLRVFPHSN--YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~-s~--Dg~V~iWd~~~~~~~~~~~h~~--~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
....|.|++++.|+.+ +. ++.|++.|+.+++.+..+.-.. ....+++. .+.++++.-.++.|.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4679999998844444 33 6899999999999998876333 23345543 3344455556789999999999988
Q ss_pred EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 431 ~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
..+... .-....+++||+.++++..+++|.++|..+.+......+... ..+...++.+.|. ++...+....++.
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~---~~p~~~~nele~~--dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN---GHRVIRLNELEYI--NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE--TTEEEEEETTSSE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC---CcccccceeEEEE--CCEEEEecCCCCe
Confidence 766544 112344667898888888889999999988776543332211 1122347788887 3444444446789
Q ss_pred EEEEeCCc
Q 005646 511 VRILQGPN 518 (686)
Q Consensus 511 I~iwd~~~ 518 (686)
|.+.|..+
T Consensus 174 V~vID~~t 181 (266)
T 2iwa_A 174 IARISAKD 181 (266)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99999875
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.36 E-value=4.2e-05 Score=78.53 Aligned_cols=180 Identities=11% Similarity=0.035 Sum_probs=107.1
Q ss_pred CeeEEEeeC-CCEEEEEECCCcEEEEECCCCeeeeEee------CCCCeEEEEEeecCCCEEEEEEc-------------
Q 005646 356 EILDLSWSK-NNYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSI------------- 415 (686)
Q Consensus 356 ~V~~l~~s~-~~~L~s~s~Dg~V~iWd~~~~~~~~~~~------h~~~V~~v~fsp~~~~~l~sgs~------------- 415 (686)
.+..+++.+ ++.|+.+...+.|..+|..++.. ..+. .....+.+++.|.+++++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 467899997 67777776666688888775543 2222 12457889998734566655432
Q ss_pred ----CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 416 ----DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 416 ----Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
++.|..||..+++.......-.....++++|+|+.|+++ +..+.|.+|++..........+ .. . . . ..
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~--~~-~--~-g-P~ 232 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL--VK-I--P-N-PG 232 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE--EE-C--S-S-EE
T ss_pred ccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE--Ee-C--C-C-CC
Confidence 367889998877655443333445679999999976665 5568999999875321110001 01 1 1 2 67
Q ss_pred EEEEeCCCCCeEEEEeC----------CCcEEEEeCCcc------------------eeEcCCCCEEEEEeCCCcEEEEe
Q 005646 491 GFQFLPQDSSKVMVSCA----------DSQVRILQGPNV------------------IGKYKDGKHIVSAGEDSNVYMWN 542 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~----------D~~I~iwd~~~~------------------~~~~~dg~~l~sgs~Dg~V~iWd 542 (686)
++++.+ ++.+.++... .+.|..+|.... +++ .+++++++....+.|.+++
T Consensus 233 gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 233 NIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred CeEECC-CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 888888 5665555433 355666653211 111 2444455544566677776
Q ss_pred CCC
Q 005646 543 CIG 545 (686)
Q Consensus 543 ~~~ 545 (686)
+..
T Consensus 311 ~~~ 313 (322)
T 2fp8_A 311 YDK 313 (322)
T ss_dssp C--
T ss_pred ccc
Confidence 653
No 241
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.36 E-value=1.3e-05 Score=83.83 Aligned_cols=237 Identities=8% Similarity=-0.059 Sum_probs=134.2
Q ss_pred ceeeecCCCccceee----------ccceEEEEEcCCccccccccccCceeccc-------CCceEEEEEeeCCCEEEEE
Q 005646 206 GERVRLNEEDAMFCS----------KVQRVKVYHCKKRSKELSALYKGQEIQAH-------DGSILTMKFSPDGQYLASA 268 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~----------~d~~v~vw~~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~Lasg 268 (686)
...+++++.++.++. .++.|.+||...... . .++..+ ......+.|+|||++|+++
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v------~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa 141 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-I------ADIELPDAPRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-E------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-E------EEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence 467888888887775 478999999876533 1 222111 1235579999999999998
Q ss_pred eC--CCcEEE--EEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccC
Q 005646 269 GD--DGVVRL--WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILE 344 (686)
Q Consensus 269 s~--Dg~I~v--Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (686)
.. +..|.+ +|+.+ +..+..... ..+.+.... ..+....++............. ...+..
T Consensus 142 n~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~--~~~~~~~dg~~~~vd~~~~~~~--------~~~v~~ 204 (368)
T 1mda_H 142 LFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAA--THYLGSCPASLAASDLAAAPAA--------AGIVGA 204 (368)
T ss_dssp ECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETT--EEECCCCTTSCEEEECCSSCCC--------CEECCC
T ss_pred ccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCe--EEEEEcCCCCEEEEECcccccc--------CCeEEE
Confidence 75 467888 99877 344433211 111111110 0111111111111111100000 000000
Q ss_pred CCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCC--eeeeEee-----------CCCCeEEEEEeecCCCEE
Q 005646 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-----------HSNYVTCVHFNPVDDNYF 410 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~--~~~~~~~-----------h~~~V~~v~fsp~~~~~l 410 (686)
.....+.-...+. . .+++ .++..+. +.|.+.|+... +.+..+. .......++|+| +++.+
T Consensus 205 ~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~l 278 (368)
T 1mda_H 205 QCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGI 278 (368)
T ss_dssp CSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEE
T ss_pred EeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEE
Confidence 0000000112232 3 4555 6555556 99999998654 2333321 112222378999 87777
Q ss_pred EEEEc-C--------CcEEEEecCCCcEEEEeccCCcEEEEEEccCCCE-EEEEe-cCCcEEEEeCCCCeeee
Q 005646 411 ISGSI-D--------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG-GIVGS-MMGDCRFYNVSDNHLEL 472 (686)
Q Consensus 411 ~sgs~-D--------g~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~-l~~gs-~dg~i~iwd~~~~~~~~ 472 (686)
+.+.. + +.+.++|+.+.+.+..+........++|+|||+. +++.. .++.|.++|+.+.+...
T Consensus 279 yV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred EEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 76543 2 3566999999999877776667899999999985 45555 48999999999988654
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.29 E-value=4.1e-05 Score=78.40 Aligned_cols=173 Identities=13% Similarity=0.022 Sum_probs=107.8
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV- 433 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~- 433 (686)
.+.++...+++.|+.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.+++ ++ +.|..+| .+++.+...
T Consensus 138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~ 211 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFY 211 (330)
T ss_dssp CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEEC
T ss_pred eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEc
Confidence 3445566667777788888999999998 77776666 455677777766 666544 44 8899999 666655333
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
.....+.++...++|. +.+++.++.+..+|... +.... ... ....+..+.+.+ ...|.+++.++.|..
T Consensus 212 ~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g-~~~~~--~~~------~~~~~~~~~~~~--~g~l~v~t~~ggl~~ 279 (330)
T 3hxj_A 212 AGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG-TEKWR--FKT------GKRIESSPVIGN--TDTIYFGSYDGHLYA 279 (330)
T ss_dssp CSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS-CEEEE--EEC------SSCCCSCCEECT--TSCEEEECTTCEEEE
T ss_pred cCCcceeceEECCCCe-EEEEcCCCeEEEECCCC-CEeEE--eeC------CCCccccceEcC--CCeEEEecCCCCEEE
Confidence 3345577888888875 55566788888888543 32221 111 111123344433 456777888888888
Q ss_pred EeCCcc--------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 514 LQGPNV--------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 514 wd~~~~--------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+|.... +...++|+ |..|+.+|.+++......+
T Consensus 280 ~d~~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 280 INPDGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp ECTTSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred ECCCCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 885321 11223444 5568889999988776543
No 243
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.28 E-value=6.8e-05 Score=85.56 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=80.0
Q ss_pred EEEEEECCCcEEEEECCCCeeeeEeeCCC--C--------------------------------------eEEEEEeecC
Q 005646 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSN--Y--------------------------------------VTCVHFNPVD 406 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~--~--------------------------------------V~~v~fsp~~ 406 (686)
.|+.++.+|.++++|..+++.+....... . ...++|+| +
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~ 399 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-D 399 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-C
Confidence 57888899999999999999875433110 0 11278888 6
Q ss_pred CCEEEEEEc---------------------------------------------CCcEEEEecCCCcEEEEeccCCcEEE
Q 005646 407 DNYFISGSI---------------------------------------------DGKVRIWAVLSCHVVDWVDIRQIVTA 441 (686)
Q Consensus 407 ~~~l~sgs~---------------------------------------------Dg~V~iwd~~~~~~~~~~~~~~~V~~ 441 (686)
..++++... +|.|+.||+.+++++-...+..++..
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~ 479 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG 479 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC
Confidence 667776532 37899999999998865555555555
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 442 v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
..+...+..+++|+.||.++.||..++++...
T Consensus 480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence 56677888999999999999999999987654
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.28 E-value=3.1e-05 Score=84.61 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=121.5
Q ss_pred CC-EEEEE-ECCCcEEEEECCCCeeeeEee--CCCCeEEEEE-e-ecCCCEEEEEE------------------cCCcEE
Q 005646 365 NN-YLLSA-SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHF-N-PVDDNYFISGS------------------IDGKVR 420 (686)
Q Consensus 365 ~~-~L~s~-s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~f-s-p~~~~~l~sgs------------------~Dg~V~ 420 (686)
|| +|+.. ..+..|.+.|+.+.++.+.+. ....+..+++ . | ++.++++++ .++.|.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence 66 55544 456679999999999988544 5567889998 4 7 888888885 246799
Q ss_pred EEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCC--------------------------------------cEEE
Q 005646 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG--------------------------------------DCRF 462 (686)
Q Consensus 421 iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg--------------------------------------~i~i 462 (686)
++|..+.+++...........++++|||+++++.+.+. .|.+
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999998887666544667788999999999988553 2445
Q ss_pred EeCCC--CeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE-eCCCcEEEEeCCcc--------------------
Q 005646 463 YNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQGPNV-------------------- 519 (686)
Q Consensus 463 wd~~~--~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~-s~D~~I~iwd~~~~-------------------- 519 (686)
.|..+ ++.. ...+.. .....++.++| |+++++++ ..+.+|.++|..+.
T Consensus 259 ID~~~~~~~~~-~~~Ipv-------g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 259 VDGRKEASSLF-TRYIPI-------ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EECSGGGCCSS-EEEEEE-------ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred EeCcccCCcee-EEEEec-------CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 55444 1110 001111 12356799999 66655554 57899999997732
Q ss_pred ------eeEcCCCCEEEEEeCCCcEEEEeCCC
Q 005646 520 ------IGKYKDGKHIVSAGEDSNVYMWNCIG 545 (686)
Q Consensus 520 ------~~~~~dg~~l~sgs~Dg~V~iWd~~~ 545 (686)
++|.++|...++.-.|++|-+||++.
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 46888995555667899999999976
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.26 E-value=0.00029 Score=72.21 Aligned_cols=153 Identities=8% Similarity=-0.004 Sum_probs=93.5
Q ss_pred CeeEEEeeC-CCEEEEEEC------------------CCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEE-Ec
Q 005646 356 EILDLSWSK-NNYLLSASI------------------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG-SI 415 (686)
Q Consensus 356 ~V~~l~~s~-~~~L~s~s~------------------Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sg-s~ 415 (686)
...++++.+ +|.|+.+.. ++.|..||..+++.......-...+.|+|+| ++++|+.+ ..
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyv~d~~ 205 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA-DSSFVLVAEFL 205 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECT-TSSEEEEEEGG
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECC-CCCEEEEEeCC
Confidence 356788888 773333322 3678888887776544333334456799999 88865555 55
Q ss_pred CCcEEEEecCCC---cEEEEeccCCcEEEEEEccCCCEEEEEec----------CCcEEEEeCCCCeeeeeeeEEeeccc
Q 005646 416 DGKVRIWAVLSC---HVVDWVDIRQIVTAVCYRPDGQGGIVGSM----------MGDCRFYNVSDNHLELDAEICVHSKK 482 (686)
Q Consensus 416 Dg~V~iwd~~~~---~~~~~~~~~~~V~~v~~spdg~~l~~gs~----------dg~i~iwd~~~~~~~~~~~~~~~~~~ 482 (686)
.+.|.+|++... ....+..... ...+++.++|++.++... .+.|..+|.. ++.... +... .
T Consensus 206 ~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~--~~~~--~ 279 (322)
T 2fp8_A 206 SHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEV--IPLP--P 279 (322)
T ss_dssp GTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEE--EECC--T
T ss_pred CCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEE--EECC--C
Confidence 689999998752 2222222334 788999999986666544 4678888875 333221 1111 1
Q ss_pred cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCC
Q 005646 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 483 ~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~ 517 (686)
......++++.+. ++.++++....+.|..++..
T Consensus 280 g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 280 PFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC-
T ss_pred CCccccceEEEEe--CCEEEEeecCCCceEEEecc
Confidence 1113456777663 45566666678889988865
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.26 E-value=0.00088 Score=66.43 Aligned_cols=151 Identities=5% Similarity=-0.074 Sum_probs=92.5
Q ss_pred CCeeEEEeeCCC-EEE-EEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEc---CCcEEEEecCCCc
Q 005646 355 GEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLSCH 428 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~---Dg~V~iwd~~~~~ 428 (686)
.....+++.+++ .|+ +-...+.|.++++.......... .......++++| ++..|+.+.. .+.|..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 356789999864 444 44557889999987543322233 225678999999 6555555543 3688888876443
Q ss_pred EEEEe-ccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 429 VVDWV-DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 429 ~~~~~-~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
..... ..-.....++++|++..|+++. ..+.|.++|+.+...... .. ......++++. ++.++++..
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~----~~-----~~~~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV----LE-----GLQYPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE----EE-----CCCSEEEEEEE--TTEEEEEET
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE----ec-----CCCCceEEEEe--CCEEEEEEC
Confidence 22222 2234578999999877665554 567899999975432211 11 11234566653 334444444
Q ss_pred CCCcEEEEeCC
Q 005646 507 ADSQVRILQGP 517 (686)
Q Consensus 507 ~D~~I~iwd~~ 517 (686)
..+.|.++|..
T Consensus 227 ~~~~v~~~d~~ 237 (267)
T 1npe_A 227 KTNSVIAMDLA 237 (267)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEEeCC
Confidence 56788888765
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.25 E-value=8.5e-05 Score=84.49 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=71.4
Q ss_pred CCcEEEEECCCCeeeeEeeCC--C------------------------------CeEEEEEeecCCCEEEEEEcCCc---
Q 005646 374 DKTVRLWRVGNDHCLRVFPHS--N------------------------------YVTCVHFNPVDDNYFISGSIDGK--- 418 (686)
Q Consensus 374 Dg~V~iWd~~~~~~~~~~~h~--~------------------------------~V~~v~fsp~~~~~l~sgs~Dg~--- 418 (686)
++.|..+|..+++.+..+... . ....+++.| ..++++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 589999999999998877521 0 112468888 7788888887763
Q ss_pred ----------------EEEEecCCCcEEEEecc---C-------CcEEEEEEccCCC---EEEEEecCCcEEEEeCCCCe
Q 005646 419 ----------------VRIWAVLSCHVVDWVDI---R-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDNH 469 (686)
Q Consensus 419 ----------------V~iwd~~~~~~~~~~~~---~-------~~V~~v~~spdg~---~l~~gs~dg~i~iwd~~~~~ 469 (686)
|.-+|..+++.+-.... . .++....+..+|+ .+++++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 99999999998743332 1 2333334445776 68889999999999999998
Q ss_pred eee
Q 005646 470 LEL 472 (686)
Q Consensus 470 ~~~ 472 (686)
+..
T Consensus 336 ~l~ 338 (668)
T 1kv9_A 336 LIS 338 (668)
T ss_dssp EEE
T ss_pred Eec
Confidence 763
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.24 E-value=0.0001 Score=72.24 Aligned_cols=153 Identities=9% Similarity=0.049 Sum_probs=101.3
Q ss_pred CeeEEEeeCCC-EEEEEECCC--cEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 356 EILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg--~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
....|.|+ ++ ++.+.+.+| .|+++|+.+++.+..+.-..........+.++.+++..-.++.+.+||..+.+++..
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 34789998 66 666777765 999999999999998885555544334442344444444689999999999999877
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
+.....- ..+++|++.|+.+..+++|.++|..+.+......+...+ .....++.+.|. ++...+..-.++.|.
T Consensus 123 i~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g---~~~~~lNELe~~--~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 123 FNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG---EELPELNELEWV--DGEIFANVWQTNKIV 195 (262)
T ss_dssp EECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT---EECCCEEEEEEE--TTEEEEEETTSSEEE
T ss_pred EECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC---ccccccceeEEE--CCEEEEEEccCCeEE
Confidence 7665432 344468888888777888999999987765543332211 111335567765 344444443566777
Q ss_pred EEeC
Q 005646 513 ILQG 516 (686)
Q Consensus 513 iwd~ 516 (686)
+.|.
T Consensus 196 vIDp 199 (262)
T 3nol_A 196 RIDP 199 (262)
T ss_dssp EECT
T ss_pred EEEC
Confidence 6664
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.12 E-value=0.0002 Score=70.15 Aligned_cols=155 Identities=8% Similarity=0.015 Sum_probs=105.3
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~ 434 (686)
.....|.|+.+.++.+.+.++.|+++|+.+++.+..+ -..........+..+.+++..-.++.+.+||..+.+++..+.
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 3457888885337778888899999999999988877 444444432333245566666678999999999999987776
Q ss_pred cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEE
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iw 514 (686)
....-..++ +|++.|+++..+++|+++|..+.+......+.... .....++.+.|. ++...+..-.++.|.+.
T Consensus 134 ~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g---~~v~~lNeLe~~--dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 134 YSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG---QPVELINELECA--NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp CSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETT---EECCCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred CCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC---cccccccccEEe--CCEEEEEECCCCeEEEE
Confidence 654433444 67888888888999999999988766544332211 122346777776 34444444456777777
Q ss_pred eCC
Q 005646 515 QGP 517 (686)
Q Consensus 515 d~~ 517 (686)
|..
T Consensus 207 Dp~ 209 (268)
T 3nok_A 207 DPA 209 (268)
T ss_dssp CTT
T ss_pred eCC
Confidence 754
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.10 E-value=6.1e-05 Score=77.12 Aligned_cols=145 Identities=14% Similarity=0.004 Sum_probs=93.1
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE-EE
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DW 432 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~-~~ 432 (686)
..+.++...+++.|+.++ +.|..+| .+++.+..+. ....+.++...+ ++ .|..++.++.|..+|. ++..+ ..
T Consensus 177 ~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~~~~~~ 250 (330)
T 3hxj_A 177 AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGTEKWRF 250 (330)
T ss_dssp CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSCEEEEE
T ss_pred CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCCEeEEe
Confidence 345566666777566666 8899999 7777766665 456788888876 55 4566777888999985 44444 33
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
......+..+.+.++| .|.+++.+|.+..+|. +++...... . ....+.++...+ + ..|.+++.+|.++
T Consensus 251 ~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~--~------~~~~~~~~~~d~-~-g~l~~gt~~G~~~ 318 (330)
T 3hxj_A 251 KTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE--T------GSWIIATPVIDE-N-GTIYFGTRNGKFY 318 (330)
T ss_dssp ECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE--C------SSCCCSCCEECT-T-CCEEEECTTSCEE
T ss_pred eCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE--c------CCccccceEEcC-C-CEEEEEcCCCeEE
Confidence 3333334455666566 5667888889999996 444432211 1 123455666655 3 4677899999998
Q ss_pred EEeCC
Q 005646 513 ILQGP 517 (686)
Q Consensus 513 iwd~~ 517 (686)
+....
T Consensus 319 ~~~~~ 323 (330)
T 3hxj_A 319 ALFNL 323 (330)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 87643
No 251
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.07 E-value=0.00069 Score=66.56 Aligned_cols=193 Identities=12% Similarity=0.175 Sum_probs=126.6
Q ss_pred EEeccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeC--CCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 348 HEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 348 ~~l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h--~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
+.+.+-...+..|+|+|++ +++....++.|...|.. ++.++.+.. ....-.|++.+ ++.++++.-.++.+.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEE
Confidence 3455666789999999976 44456778899999998 888887762 35788899987 777666655678899998
Q ss_pred cCCCcE---EEEec-------cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEee--ccccCCCCCeEE
Q 005646 424 VLSCHV---VDWVD-------IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH--SKKKAPCKRITG 491 (686)
Q Consensus 424 ~~~~~~---~~~~~-------~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~I~~ 491 (686)
+..... +.... .......++|+|+++.|+++.......+|.+..-.......+... -........+.+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 865432 22221 233468999999998888877766666666541000000111100 001123456899
Q ss_pred EEEeCCCCCeEEEEeCCCcEEEEeCC-----------------------cceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 492 FQFLPQDSSKVMVSCADSQVRILQGP-----------------------NVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 492 l~fsp~~~~~l~~~s~D~~I~iwd~~-----------------------~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
++++|..+.+++.......|.++|.. ..+++.++|+..++ ++-+.++++.-
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 99999776677776667777777632 24778889975554 78877776654
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.06 E-value=0.0012 Score=73.42 Aligned_cols=107 Identities=12% Similarity=-0.041 Sum_probs=71.6
Q ss_pred CCEEEEEEC------CCcEEEEECCCCeeeeEeeCCCCe---------------------------------------EE
Q 005646 365 NNYLLSASI------DKTVRLWRVGNDHCLRVFPHSNYV---------------------------------------TC 399 (686)
Q Consensus 365 ~~~L~s~s~------Dg~V~iWd~~~~~~~~~~~h~~~V---------------------------------------~~ 399 (686)
++.++.++. ++.|..+|..+++.+..+...... ..
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~ 239 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence 455555544 789999999999998877632211 23
Q ss_pred EEEeecCCCEEEEEEcC----------------CcEEEEecCCCcEEEEeccC-----------CcEEEEEEccCCC---
Q 005646 400 VHFNPVDDNYFISGSID----------------GKVRIWAVLSCHVVDWVDIR-----------QIVTAVCYRPDGQ--- 449 (686)
Q Consensus 400 v~fsp~~~~~l~sgs~D----------------g~V~iwd~~~~~~~~~~~~~-----------~~V~~v~~spdg~--- 449 (686)
+++.| ....++.+..+ +.|..+|..+++.+-..... .++ -+...++|+
T Consensus 240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~ 317 (571)
T 2ad6_A 240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTP 317 (571)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEE
T ss_pred EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEE
Confidence 56777 55666666532 35999999999987433211 222 233335784
Q ss_pred EEEEEecCCcEEEEeCCCCeeeee
Q 005646 450 GGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 450 ~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
.++.++.+|.++++|..++++...
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~ 341 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEeCCCcEEEEEECCCCCEEee
Confidence 577889999999999999887653
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.06 E-value=0.00085 Score=65.04 Aligned_cols=156 Identities=7% Similarity=-0.035 Sum_probs=103.3
Q ss_pred CCeeEEEeeCCCEEEEEECC--CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEE
Q 005646 355 GEILDLSWSKNNYLLSASID--KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~D--g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~ 432 (686)
.....|.|+++.++.+.+.+ ..|+.+|+.+++.+..+.-..........+.++.+++..-.++.+.+||..+.+++..
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 45679999873366666665 4899999999999998885544444444442445555555789999999999999877
Q ss_pred eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEE
Q 005646 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (686)
Q Consensus 433 ~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~ 512 (686)
+.....-..+ .+|++.|+++..++.|.++|..+.+.....++...+ .....++.+.+. ++...+..-.+..|.
T Consensus 101 i~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g---~~~~~lNeLe~~--~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 101 FRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG---RPLDNLNELEWV--NGELLANVWLTSRIA 173 (243)
T ss_dssp EECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT---EECCCEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC---cccccceeeEEe--CCEEEEEECCCCeEE
Confidence 7665543344 467888888888999999999987765544332211 112335666665 334443333566666
Q ss_pred EEeCC
Q 005646 513 ILQGP 517 (686)
Q Consensus 513 iwd~~ 517 (686)
+.|..
T Consensus 174 vIDp~ 178 (243)
T 3mbr_X 174 RIDPA 178 (243)
T ss_dssp EECTT
T ss_pred EEECC
Confidence 66643
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.04 E-value=0.0084 Score=69.57 Aligned_cols=183 Identities=14% Similarity=0.124 Sum_probs=119.2
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee---------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~---------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
...|.++...++|.|..|+.++-|..|+..+++...... ....|.++...+ ++++|..|+.++-|.+||.
T Consensus 356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeC
Confidence 356889988888888889998889999988776543321 136799999887 7775777888788999999
Q ss_pred CCCcEEEEec-----cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 425 LSCHVVDWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 425 ~~~~~~~~~~-----~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
.+++...+.. ....|.++...++|++.+ |+. +.+.+||..+++....... ......+...|.++...+ ++
T Consensus 435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~-~g 509 (795)
T 4a2l_A 435 NSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRDS-HK 509 (795)
T ss_dssp TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEECT-TC
T ss_pred CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEcccc--ccccccCCceEEEEEECC-CC
Confidence 9887665542 235689999988887555 444 4589999887765322110 000011235688888776 44
Q ss_pred CeEEEEeCCCcEEEEeCCc--------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 500 SKVMVSCADSQVRILQGPN--------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~~--------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
.+. +++. +.|..|+..+ .+...++|++.++. .. -|..||..++
T Consensus 510 ~lW-igt~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 510 RLW-IGGE-EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDK 572 (795)
T ss_dssp CEE-EEES-SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTT
T ss_pred CEE-EEeC-CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCC
Confidence 444 4444 4566666421 12233466655543 33 5788887654
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.02 E-value=0.0013 Score=73.18 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=69.2
Q ss_pred CCCcEEEEECCCCeeeeEeeCCCCe---------------------------------------EEEEEeecCCCEEEEE
Q 005646 373 IDKTVRLWRVGNDHCLRVFPHSNYV---------------------------------------TCVHFNPVDDNYFISG 413 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~h~~~V---------------------------------------~~v~fsp~~~~~l~sg 413 (686)
.++.|+-+|..+++.+..+...... ..+++.+ ..++++.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 3789999999999998887632211 1356667 66777777
Q ss_pred EcC----------------CcEEEEecCCCcEEEEeccC-----------CcEEEEEEc-cCC---CEEEEEecCCcEEE
Q 005646 414 SID----------------GKVRIWAVLSCHVVDWVDIR-----------QIVTAVCYR-PDG---QGGIVGSMMGDCRF 462 (686)
Q Consensus 414 s~D----------------g~V~iwd~~~~~~~~~~~~~-----------~~V~~v~~s-pdg---~~l~~gs~dg~i~i 462 (686)
..+ +.|.-+|..+++++-..... .++. +... .+| ..++.++.+|.+++
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~ 337 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYT 337 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEE
Confidence 665 37999999999987333221 1221 2232 577 46777899999999
Q ss_pred EeCCCCeeeee
Q 005646 463 YNVSDNHLELD 473 (686)
Q Consensus 463 wd~~~~~~~~~ 473 (686)
+|..+++++..
T Consensus 338 lD~~tG~~lw~ 348 (599)
T 1w6s_A 338 LDRTDGALVSA 348 (599)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCCEeec
Confidence 99999987654
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.02 E-value=0.0032 Score=63.78 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=87.9
Q ss_pred CeeEEEeeCCC-EEEEEEC-CC-cEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--
Q 005646 356 EILDLSWSKNN-YLLSASI-DK-TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-- 428 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~-Dg-~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-- 428 (686)
....+++.+++ ++++... ++ .|..+|..+++...... .......++..+ ++..+++-..++.|..+|..++.
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe
Confidence 46789999998 4444333 22 46667777776544333 223345555554 44445554468899999987653
Q ss_pred EEEEec---------cCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCC-CeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 429 VVDWVD---------IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 429 ~~~~~~---------~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
+..... .-.....+ +|+++.|+++ ...+.|..|++.. +.+... ..... .....++++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~-~~~~~------~~~P~gi~vd~- 221 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP-EIFVE------QTNIDDFAFDV- 221 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC-EEEEE------SCCCSSEEEBT-
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc-EEEec------cCCCCCeEECC-
Confidence 221110 11234555 8888766555 4578899999875 332111 11111 12356788888
Q ss_pred CCCeEEEEeCCCcEEEEeCC
Q 005646 498 DSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~~ 517 (686)
++.++++....+.|.+++..
T Consensus 222 dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TCCEEEECBTTCCEEEECTT
T ss_pred CCCEEEEeCCCCeEEEECCC
Confidence 56666666667788888754
No 257
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.97 E-value=0.007 Score=70.20 Aligned_cols=183 Identities=9% Similarity=0.108 Sum_probs=120.6
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-------CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-------h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
...|.++...++|.|..|+.++-|..|+..+........ ....|.++...+ +++ |..|+.++-|..||..+
T Consensus 309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTT
T ss_pred CCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCC
Confidence 357899999888888889998899999876554322111 245699999876 555 55678787899999988
Q ss_pred CcEEEEec---------cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 427 CHVVDWVD---------IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 427 ~~~~~~~~---------~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
++...... ....|.+++..++|+.|.+|+.++-+.+||..+++...... .....+...|.++...+
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~----~~~~l~~~~v~~i~~d~- 461 (795)
T 4a2l_A 387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ----RNSQLVNENVYAILPDG- 461 (795)
T ss_dssp CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT----TTSCCSCSCEEEEEECS-
T ss_pred CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec----CCCCcCCCeeEEEEECC-
Confidence 77654431 13568999999999857778887889999988765432110 00112345688888776
Q ss_pred CCCeEEEEeCCCcEEEEeCCcc---------------------eeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 498 DSSKVMVSCADSQVRILQGPNV---------------------IGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~~~~---------------------~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
++. |.+++. +.|.+|+..+. +...++|++.+.. . +-|+.|+..++.
T Consensus 462 ~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 462 EGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLD 528 (795)
T ss_dssp SSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTE
T ss_pred CCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCe
Confidence 444 444444 45777775431 2223456555543 4 458888876643
No 258
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.95 E-value=0.00032 Score=79.70 Aligned_cols=254 Identities=13% Similarity=0.069 Sum_probs=138.7
Q ss_pred eeec-CCCccceeeccc-----------eEEEEEcCCccccccccccCcee-cccCCceEEEEEeeCCCEEEEEeC-CCc
Q 005646 208 RVRL-NEEDAMFCSKVQ-----------RVKVYHCKKRSKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGD-DGV 273 (686)
Q Consensus 208 ~~s~-~~~~l~~g~~d~-----------~v~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~-Dg~ 273 (686)
.+.+ ++..++.|+.+. .+.+||........ + ..+ ..+.....++++..+|++++.||. +..
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~--~---~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD--R---TVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC--C---EEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe--C---cccCCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence 4444 666666665432 57777765543211 1 111 123333445778889999999984 457
Q ss_pred EEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccC
Q 005646 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (686)
Q Consensus 274 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 353 (686)
+.+||..+.+-...-. +. .
T Consensus 267 v~~yd~~t~~W~~~~~------------------------------------------------------------~~-~ 285 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPD------------------------------------------------------------MQ-V 285 (656)
T ss_dssp EEEEEGGGTEEEECCC------------------------------------------------------------CS-S
T ss_pred eEEecCcCCceeECCC------------------------------------------------------------CC-c
Confidence 9999987764211000 00 0
Q ss_pred CCCeeEEEeeCCC-EEEEEE-CC-----CcEEEEECCCCeeeeE-----eeCCCCeEEEEEeecCCCEEEEEEcCC----
Q 005646 354 SGEILDLSWSKNN-YLLSAS-ID-----KTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDG---- 417 (686)
Q Consensus 354 ~~~V~~l~~s~~~-~L~s~s-~D-----g~V~iWd~~~~~~~~~-----~~h~~~V~~v~fsp~~~~~l~sgs~Dg---- 417 (686)
...-.+++..+++ +++.|+ .+ ..+.+||..+.+.... ......-....+.. ++..++.|+.+|
T Consensus 286 ~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~ 364 (656)
T 1k3i_A 286 ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQ 364 (656)
T ss_dssp CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEE
T ss_pred cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCCCcEEE
Confidence 0111234455666 666676 34 5799999988875443 11000000011112 455555665544
Q ss_pred -----cEEEEecCCCcEEEEeccC----------CcEEEEEEcc-CCCEEEEEecCC-----------cEEEEeCCCCee
Q 005646 418 -----KVRIWAVLSCHVVDWVDIR----------QIVTAVCYRP-DGQGGIVGSMMG-----------DCRFYNVSDNHL 470 (686)
Q Consensus 418 -----~V~iwd~~~~~~~~~~~~~----------~~V~~v~~sp-dg~~l~~gs~dg-----------~i~iwd~~~~~~ 470 (686)
.+..||..+..-....... ..-.++.|.. +++++++|+.++ .+.+||..++..
T Consensus 365 ~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 444 (656)
T 1k3i_A 365 AGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN 444 (656)
T ss_dssp CCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE
T ss_pred ecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe
Confidence 4678888776533222111 1234555544 788888887543 688888877654
Q ss_pred eeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC-----------CcEEEEeCCcc-----------------eeE
Q 005646 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----------SQVRILQGPNV-----------------IGK 522 (686)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D-----------~~I~iwd~~~~-----------------~~~ 522 (686)
.... .........-.+....| +++++++++.+ ..+.+||..+. ...
T Consensus 445 ~~~~-----~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~l 518 (656)
T 1k3i_A 445 TVFA-----SNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL 518 (656)
T ss_dssp EEEC-----TTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEE
T ss_pred eEEc-----cCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhc
Confidence 3211 00011111223455667 77888888864 46889985431 224
Q ss_pred cCCCCEEEEEeC
Q 005646 523 YKDGKHIVSAGE 534 (686)
Q Consensus 523 ~~dg~~l~sgs~ 534 (686)
.+||+.++.|+.
T Consensus 519 l~dg~v~v~GG~ 530 (656)
T 1k3i_A 519 LPDGRVFNGGGG 530 (656)
T ss_dssp CTTSCEEEEECC
T ss_pred CCCcEEEecCCC
Confidence 468898888885
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.93 E-value=0.0023 Score=64.84 Aligned_cols=186 Identities=9% Similarity=-0.041 Sum_probs=115.9
Q ss_pred CCeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCC--cEEEEecCCCcEEE
Q 005646 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG--KVRIWAVLSCHVVD 431 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg--~V~iwd~~~~~~~~ 431 (686)
.....++|++++ ++++-..++.|..||.... ....+.....+..+++.| +++++++..... .|..+|..++++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 456789999988 5555557899999998754 444445556789999999 888766654432 47777878887654
Q ss_pred Eecc--CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE-ee-ccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 432 WVDI--RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC-VH-SKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 432 ~~~~--~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~-~~-~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
.... ......++..+++..+++-..+|.|+++|...++........ +. ...........++ +|++..++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 4432 223455666666655555556899999998764321100000 00 0011122345666 7743345566667
Q ss_pred CCcEEEEeCC-----------------cceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 508 DSQVRILQGP-----------------NVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 508 D~~I~iwd~~-----------------~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
.++|..++.. ..+++.++|+++++....+.|.+++..
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 7888888753 235566688877777677888888864
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.91 E-value=0.00016 Score=82.25 Aligned_cols=190 Identities=11% Similarity=0.051 Sum_probs=110.2
Q ss_pred CCeeEEEeeCCC-EEEEEE-CCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEE-cC-----CcEEEEec
Q 005646 355 GEILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGS-ID-----GKVRIWAV 424 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s-~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs-~D-----g~V~iwd~ 424 (686)
....++++..++ +++.|+ .+..+.+||..+.+....-. ....-.+++..+ ++++++.|+ .+ ..+.+||.
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 334456777778 777776 45689999998886554322 222223455666 889999998 44 56999999
Q ss_pred CCCcEEEEec-----cCCcEEEEEEccCCCEEEEEecCC---------cEEEEeCCCCeeeeeeeEEeeccc---cCCCC
Q 005646 425 LSCHVVDWVD-----IRQIVTAVCYRPDGQGGIVGSMMG---------DCRFYNVSDNHLELDAEICVHSKK---KAPCK 487 (686)
Q Consensus 425 ~~~~~~~~~~-----~~~~V~~v~~spdg~~l~~gs~dg---------~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~ 487 (686)
.+.+-..... ....-....+..+++.++.|+.+| .+..||..++....... ..... .....
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~--~~~~~~~~~~~~~ 399 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG--KRQSNRGVAPDAM 399 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE--ECEETTEECCCCB
T ss_pred CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC--ccccccccCCCCC
Confidence 8876443311 110000112334666666665554 46788887765432111 11100 00111
Q ss_pred CeEEEEEeCCCCCeEEEEeCCC-----------cEEEEeCCcc------------------eeEcCCCCEEEEEeCC---
Q 005646 488 RITGFQFLPQDSSKVMVSCADS-----------QVRILQGPNV------------------IGKYKDGKHIVSAGED--- 535 (686)
Q Consensus 488 ~I~~l~fsp~~~~~l~~~s~D~-----------~I~iwd~~~~------------------~~~~~dg~~l~sgs~D--- 535 (686)
.-.++.|...+++++++|+.++ .|.+||..+. ....++++.++.|+.+
T Consensus 400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence 2344555554677888887543 5777764321 2344699999999865
Q ss_pred --------CcEEEEeCCCCC
Q 005646 536 --------SNVYMWNCIGHE 547 (686)
Q Consensus 536 --------g~V~iWd~~~~~ 547 (686)
..+.+||..+.+
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTE
T ss_pred CcCCCCcccceEEEcCCCCc
Confidence 468899987643
No 261
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.0012 Score=70.54 Aligned_cols=112 Identities=6% Similarity=0.092 Sum_probs=71.7
Q ss_pred CCeeEEEeeCCC-EEEEEECC-C----cEEEEECCCCeee--eEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC
Q 005646 355 GEILDLSWSKNN-YLLSASID-K----TVRLWRVGNDHCL--RVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~s~D-g----~V~iWd~~~~~~~--~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~ 426 (686)
.....++|++++ +|+.+... + .+.+.+. .+... ..+........++++|.++.++++-..++.|+.++..+
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 456789999988 56666542 1 2333333 22221 23333344567889985566666666778999999987
Q ss_pred CcEEEEecc--CCcEEEEEEccCCCEEEE-EecCCcEEEEeCCC
Q 005646 427 CHVVDWVDI--RQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSD 467 (686)
Q Consensus 427 ~~~~~~~~~--~~~V~~v~~spdg~~l~~-gs~dg~i~iwd~~~ 467 (686)
+....+... ......++|+|+|++|++ -...+.|+.++...
T Consensus 258 ~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 765333322 245788999999995554 45678899988653
No 262
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.89 E-value=0.0035 Score=71.13 Aligned_cols=152 Identities=9% Similarity=0.079 Sum_probs=100.0
Q ss_pred eeEEEeeCCC-EEEEEECCC-------------------cEEEEECCCCeeeeEee---CC-------CCeEEEEEeecC
Q 005646 357 ILDLSWSKNN-YLLSASIDK-------------------TVRLWRVGNDHCLRVFP---HS-------NYVTCVHFNPVD 406 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg-------------------~V~iWd~~~~~~~~~~~---h~-------~~V~~v~fsp~~ 406 (686)
...+++.+.. +++.++.++ .|..+|..+++.+..+. |. .++....+.. +
T Consensus 232 w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~ 310 (668)
T 1kv9_A 232 WDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-D 310 (668)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-T
T ss_pred ccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-C
Confidence 3456777765 777776665 49999999999998887 22 2333333333 5
Q ss_pred CC---EEEEEEcCCcEEEEecCCCcEEEEeccCC-------------cE------------------------EEEEEcc
Q 005646 407 DN---YFISGSIDGKVRIWAVLSCHVVDWVDIRQ-------------IV------------------------TAVCYRP 446 (686)
Q Consensus 407 ~~---~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~-------------~V------------------------~~v~~sp 446 (686)
++ .++.++.+|.|+++|..+++++....... ++ ..++++|
T Consensus 311 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp 390 (668)
T 1kv9_A 311 GKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP 390 (668)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET
T ss_pred CcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC
Confidence 54 68999999999999999999873221110 00 1267888
Q ss_pred CCCEEEEEe------------------------------------cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeE
Q 005646 447 DGQGGIVGS------------------------------------MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (686)
Q Consensus 447 dg~~l~~gs------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~ 490 (686)
+...+++.. .+|.|..||+.+++........ ....
T Consensus 391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~---------~~~~ 461 (668)
T 1kv9_A 391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP---------THWN 461 (668)
T ss_dssp TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES---------SSCC
T ss_pred CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC---------CCCc
Confidence 777666521 2378999999998876543321 1222
Q ss_pred EEEEeCCCCCeEEEEeCCCcEEEEeCCcc
Q 005646 491 GFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (686)
Q Consensus 491 ~l~fsp~~~~~l~~~s~D~~I~iwd~~~~ 519 (686)
...+.. .+.++++++.|+.++.||..+.
T Consensus 462 ~~~~~t-~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 462 GGTLST-AGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp CCEEEE-TTTEEEEECTTSEEEEEETTTC
T ss_pred CceeEe-CCCEEEEECCcccchhhhhhcC
Confidence 233334 4578888899999999997653
No 263
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.84 E-value=0.0018 Score=69.35 Aligned_cols=161 Identities=11% Similarity=0.090 Sum_probs=90.3
Q ss_pred CCeeEEEeeCCCEEEEEECC----Cc-EEEEECCCCee-eeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc
Q 005646 355 GEILDLSWSKNNYLLSASID----KT-VRLWRVGNDHC-LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~D----g~-V~iWd~~~~~~-~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
.....+++++++.|+.+... .. +...+...+.. ...+..-.....++++|.++.++++-..++.|+.+|..++.
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~ 261 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT 261 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence 45678999998844444332 11 22233221110 11222334456788888556666666677899999998776
Q ss_pred E-EEEec--cCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCC--CeeeeeeeEEee-cc--------ccCCCCCeEEEE
Q 005646 429 V-VDWVD--IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSD--NHLELDAEICVH-SK--------KKAPCKRITGFQ 493 (686)
Q Consensus 429 ~-~~~~~--~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~--~~~~~~~~~~~~-~~--------~~~~~~~I~~l~ 493 (686)
. ..+.. .......++|+|+|+.|+++ ...+.|+.++... +.+.....+... .. .........+++
T Consensus 262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gia 341 (433)
T 4hw6_A 262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGI 341 (433)
T ss_dssp EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEE
T ss_pred EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEE
Confidence 6 22222 12234579999999955554 4567899988653 322111111110 00 011234467788
Q ss_pred E---------eCCCCCeEEEEeCCCcEEEEeC
Q 005646 494 F---------LPQDSSKVMVSCADSQVRILQG 516 (686)
Q Consensus 494 f---------sp~~~~~l~~~s~D~~I~iwd~ 516 (686)
+ .+ ++.++++-...++|+.++.
T Consensus 342 v~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 342 FVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEECGGGTTSSC-CEEEEEEETTTTEEEEECT
T ss_pred EEccccccccCC-CCcEEEEECCCCEEEEECC
Confidence 8 34 5566666667788888874
No 264
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.83 E-value=0.0079 Score=58.96 Aligned_cols=204 Identities=8% Similarity=0.122 Sum_probs=123.0
Q ss_pred ceecccCCceEEEEEeeCCCEEE-EEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEE
Q 005646 244 QEIQAHDGSILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (686)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (686)
+.+.+-...+..|+|+|++..|+ +...++.|...|.. ++.+..+..
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------------------------------- 66 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------------------------------- 66 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC--------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec--------------------------------
Confidence 34556667899999999866555 46667777777775 553333321
Q ss_pred EeeccCCceEEEeCCccccccCCCeEEeccCCCCeeEEEeeCCC-EEEEEECCCcEEEEECCCCee---eeEe-------
Q 005646 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC---LRVF------- 391 (686)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~---~~~~------- 391 (686)
.+ ....-.+++.+++ ++++.-.++.+.++++..... +...
T Consensus 67 ----------------------------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~ 117 (255)
T 3qqz_A 67 ----------------------------DF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQES 117 (255)
T ss_dssp ----------------------------SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSC
T ss_pred ----------------------------CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccc
Confidence 11 1456678888888 445544567888888765442 1222
Q ss_pred eCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC---CcEEEEec--------cCCcEEEEEEccC-CCEEEEEecCCc
Q 005646 392 PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS---CHVVDWVD--------IRQIVTAVCYRPD-GQGGIVGSMMGD 459 (686)
Q Consensus 392 ~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~---~~~~~~~~--------~~~~V~~v~~spd-g~~l~~gs~dg~ 459 (686)
..+.....|+|+| .++.|+++.......||.+.. ...+.... .-..+.+++|+|. +++++.......
T Consensus 118 ~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~ 196 (255)
T 3qqz_A 118 PTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRA 196 (255)
T ss_dssp CCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTE
T ss_pred cccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCe
Confidence 1345579999999 676666666655556665541 11111111 1234789999994 556666777888
Q ss_pred EEEEeCCCCeeeeeeeEEeeccc---cCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 460 CRFYNVSDNHLELDAEICVHSKK---KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+.++|.... .... +.+.... ......--+|+|.+ +++ |.+.+..+.++++.
T Consensus 197 L~~~d~~g~-~~~~--~~L~~g~~~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 197 LQEVTLVGE-VIGE--MSLTKGSRGLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp EEEECTTCC-EEEE--EECSTTGGGCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEE
T ss_pred EEEEcCCCC-EEEE--EEcCCccCCcccccCCCCeeEECC-CCC-EEEEcCCceEEEEE
Confidence 999998754 3221 1222110 11224578999999 666 55557767666664
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.71 E-value=0.015 Score=60.08 Aligned_cols=155 Identities=7% Similarity=-0.029 Sum_probs=102.6
Q ss_pred CCeeEEEeeCCC-EE-EEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE
Q 005646 355 GEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~ 431 (686)
.....++|.+.+ .| ++-...+.|..+++........+. .......+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 347899999754 44 455567889999988765444443 334567899998456666666677899999987654333
Q ss_pred Ee-ccCCcEEEEEEccCCCEEEEEe-cC-CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 432 WV-DIRQIVTAVCYRPDGQGGIVGS-MM-GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 432 ~~-~~~~~V~~v~~spdg~~l~~gs-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.. ..-.....++++|.+..|+... .. +.|..+++........ ........++|+++|.++.+.++-...
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--------~~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--------ADTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES--------CCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE--------EECCCCCcceEEEeCCCCEEEEEECCC
Confidence 33 2335578999999666555544 34 7788888875432210 011234578999999666666666677
Q ss_pred CcEEEEeCC
Q 005646 509 SQVRILQGP 517 (686)
Q Consensus 509 ~~I~iwd~~ 517 (686)
+.|..++..
T Consensus 225 ~~I~~~~~d 233 (349)
T 3v64_C 225 HVIERANLD 233 (349)
T ss_dssp TEEEEEETT
T ss_pred CEEEEEeCC
Confidence 888888754
No 266
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.017 Score=61.63 Aligned_cols=157 Identities=8% Similarity=-0.011 Sum_probs=86.2
Q ss_pred eeEEEeeC-CCE-EEEEECCCcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCC-EEEEEEcCCcEEEEecCC--CcE
Q 005646 357 ILDLSWSK-NNY-LLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLS--CHV 429 (686)
Q Consensus 357 V~~l~~s~-~~~-L~s~s~Dg~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~-~l~sgs~Dg~V~iwd~~~--~~~ 429 (686)
...++++| ++. +++-..++.|..++...+.....+. .......|+|+| +++ ++++-...+.|..++... +..
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~~~~~~ 306 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYDWKTKRL 306 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCCcccccc
Confidence 46788899 664 4455567889999998776533333 234578999999 888 455555678899987653 221
Q ss_pred ---EEEecc---------------CCcEE-EEEEc--------cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEE---ee
Q 005646 430 ---VDWVDI---------------RQIVT-AVCYR--------PDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC---VH 479 (686)
Q Consensus 430 ---~~~~~~---------------~~~V~-~v~~s--------pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~---~~ 479 (686)
..+... -.... .++.. ++|.++++-...+.|+.++. ++.+....-.. ..
T Consensus 307 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~ 385 (430)
T 3tc9_A 307 TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTS 385 (430)
T ss_dssp CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSS
T ss_pred cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCC
Confidence 111111 01123 45553 34655555556677888884 34332211000 00
Q ss_pred c------cccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEe
Q 005646 480 S------KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (686)
Q Consensus 480 ~------~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd 515 (686)
+ ..........+|++.|+++.++++-..+.+|+.++
T Consensus 386 G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 386 GYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp SCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred cccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 0 00111235677888774344444444555555554
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.69 E-value=0.021 Score=58.04 Aligned_cols=155 Identities=7% Similarity=-0.035 Sum_probs=99.2
Q ss_pred CCeeEEEeeCCC--EEEEEECCCcEEEEECCC----CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 355 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~----~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
.....++|++.+ .+++-...+.|..+++.. ......+. .-.....+++.+.+++++++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 456789999865 444555678999999876 22222232 22456889998745556666667889999998766
Q ss_pred cEEEEec-cCCcEEEEEEccCCCEEEEEecC--CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 428 HVVDWVD-IRQIVTAVCYRPDGQGGIVGSMM--GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 428 ~~~~~~~-~~~~V~~v~~spdg~~l~~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
....+.. .-.....++++|.+..|+.+... +.|..+++....... +. ........++++.|.++.++++
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~-----~~---~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-----LV---TENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-----EE---CSSCSCEEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE-----EE---ECCCCCceEEEEeccCCEEEEE
Confidence 5443333 33567899999976666555443 688888886543211 10 1123458899999955556666
Q ss_pred EeCCCcEEEEeCC
Q 005646 505 SCADSQVRILQGP 517 (686)
Q Consensus 505 ~s~D~~I~iwd~~ 517 (686)
-...+.|..+|..
T Consensus 182 D~~~~~I~~~d~d 194 (316)
T 1ijq_A 182 DSKLHSISSIDVN 194 (316)
T ss_dssp ETTTTEEEEEETT
T ss_pred ECCCCeEEEEecC
Confidence 6677888888753
No 268
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.69 E-value=0.0046 Score=68.66 Aligned_cols=57 Identities=7% Similarity=-0.060 Sum_probs=40.3
Q ss_pred cEEEEECCCCeeeeEee---CCC----CeEE---EEEeecCC---CEEEEEEcCCcEEEEecCCCcEEEEe
Q 005646 376 TVRLWRVGNDHCLRVFP---HSN----YVTC---VHFNPVDD---NYFISGSIDGKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 376 ~V~iWd~~~~~~~~~~~---h~~----~V~~---v~fsp~~~---~~l~sgs~Dg~V~iwd~~~~~~~~~~ 433 (686)
.|..+|..+++.+..++ |.. .+.. +...+ ++ ..++.++.+|.|.++|..+++++...
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 69999999999988876 211 1111 22223 56 36778899999999999999887433
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.68 E-value=0.006 Score=67.88 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=49.9
Q ss_pred EEEEeecCCCEEEEEEc--------------------C----CcEEEEecCCCcEEEEecc---C--------CcEEEEE
Q 005646 399 CVHFNPVDDNYFISGSI--------------------D----GKVRIWAVLSCHVVDWVDI---R--------QIVTAVC 443 (686)
Q Consensus 399 ~v~fsp~~~~~l~sgs~--------------------D----g~V~iwd~~~~~~~~~~~~---~--------~~V~~v~ 443 (686)
.+++.| ..++++.+.. | +.|.-+|..+++.+-.... . .++. +.
T Consensus 250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~ 327 (582)
T 1flg_A 250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD 327 (582)
T ss_dssp CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence 356677 5667776663 2 5899999999998743321 1 1221 22
Q ss_pred Ec-cCCC---EEEEEecCCcEEEEeCCCCeeeee
Q 005646 444 YR-PDGQ---GGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 444 ~s-pdg~---~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
.. .+|+ .++.++.+|.++++|..++++...
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 361 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA 361 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEecc
Confidence 22 5774 788899999999999999887653
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.67 E-value=0.0074 Score=63.44 Aligned_cols=155 Identities=7% Similarity=-0.038 Sum_probs=102.4
Q ss_pred CCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE
Q 005646 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 355 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~ 431 (686)
.....++|.+.+ ++++-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 457889999754 44455567889999988765444443 334567899998456666666667889998887654333
Q ss_pred Eec-cCCcEEEEEEccCCCEEEEEec-C-CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 432 WVD-IRQIVTAVCYRPDGQGGIVGSM-M-GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 432 ~~~-~~~~V~~v~~spdg~~l~~gs~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
... .-.....++++|.+..|+.... . +.|..+++........ . .......++|+++|.++.++++-...
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~----~----~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII----A----DTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE----E----ECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 332 2356789999997766665543 3 6788888865432210 1 11224578999998566666666677
Q ss_pred CcEEEEeCC
Q 005646 509 SQVRILQGP 517 (686)
Q Consensus 509 ~~I~iwd~~ 517 (686)
+.|..++..
T Consensus 268 ~~I~~~d~d 276 (386)
T 3v65_B 268 HVIERANLD 276 (386)
T ss_dssp TEEEEECTT
T ss_pred CEEEEEeCC
Confidence 888888753
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.63 E-value=0.0014 Score=75.68 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=65.9
Q ss_pred eEEEeeCCC-EEEEEECC-----CcEEEEECCCCee--eeEee--CCCCeEEEEEeecCCCEEEEEEc---CCcEEEEec
Q 005646 358 LDLSWSKNN-YLLSASID-----KTVRLWRVGNDHC--LRVFP--HSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAV 424 (686)
Q Consensus 358 ~~l~~s~~~-~L~s~s~D-----g~V~iWd~~~~~~--~~~~~--h~~~V~~v~fsp~~~~~l~sgs~---Dg~V~iwd~ 424 (686)
..++|+|++ .|+....| ..|.++++.+++. ...+. .......+.|+| ++++|+..+. ...|+++|+
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEES
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEEC
Confidence 468899998 66655554 3688888887642 23332 345677899999 9988877663 346888999
Q ss_pred CCC--cE--EEEec-cCCcEEEEEEccCCCEEEEE-ecC--C--cEEEEeCCC
Q 005646 425 LSC--HV--VDWVD-IRQIVTAVCYRPDGQGGIVG-SMM--G--DCRFYNVSD 467 (686)
Q Consensus 425 ~~~--~~--~~~~~-~~~~V~~v~~spdg~~l~~g-s~d--g--~i~iwd~~~ 467 (686)
.++ .. ..+.. .......+.|+. |+.|+.. ..+ + .|..+|+.+
T Consensus 303 ~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 303 RKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 875 23 32222 233445555443 5555444 333 2 566667654
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.58 E-value=0.022 Score=59.76 Aligned_cols=112 Identities=6% Similarity=-0.067 Sum_probs=72.3
Q ss_pred eeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEEE
Q 005646 357 ILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVDW 432 (686)
Q Consensus 357 V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~~ 432 (686)
...+++.+.+ ++++-...+.|.+.++........+. .-.....|++.|..+.++++-... +.|..+++.......+
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~ 240 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII 240 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence 3567777644 44555567788888887554333333 336789999999444455554444 7888888875544333
Q ss_pred ec-cCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCC
Q 005646 433 VD-IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDN 468 (686)
Q Consensus 433 ~~-~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~ 468 (686)
.. .-.....|+++|++..|+.+ +..+.|..+|+...
T Consensus 241 ~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 241 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 32 23457899999876666655 44677999998653
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.58 E-value=0.044 Score=56.54 Aligned_cols=113 Identities=6% Similarity=-0.064 Sum_probs=74.3
Q ss_pred CeeEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEE
Q 005646 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVD 431 (686)
Q Consensus 356 ~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~ 431 (686)
....+++.+. + ++++-...+.|.+.++........+. .-.....|+++|.++.++++-... +.|..+++.......
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 196 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 196 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE
Confidence 3467888764 4 44555567889999987654333333 345679999999445555555555 788888887544333
Q ss_pred Eec-cCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCC
Q 005646 432 WVD-IRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDN 468 (686)
Q Consensus 432 ~~~-~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~ 468 (686)
+.. .-.....|+++|++..|+.+. ..+.|..+|+...
T Consensus 197 ~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 197 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 322 234578999998776666554 4677999998753
No 274
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.58 E-value=0.019 Score=58.59 Aligned_cols=111 Identities=12% Similarity=0.182 Sum_probs=81.3
Q ss_pred CCeeEEEe--eCC-C--EEEEEECCCcEEEEECC-------CCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 355 GEILDLSW--SKN-N--YLLSASIDKTVRLWRVG-------NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 355 ~~V~~l~~--s~~-~--~L~s~s~Dg~V~iWd~~-------~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
..+..+++ +|. + +++....++.+..|++. +.+.++.|.....+..++..+ ....|+.+-.+.-|..+
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~ 206 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYGRLYIAEEDEAIWKF 206 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCCeEEEecccceEEEE
Confidence 34455555 563 4 68888889999999982 346778888888899999998 78889999998777777
Q ss_pred ecC-----CCcEEEEecc---CCcEEEEEE--ccCCC-EEEEEe-cCCcEEEEeCC
Q 005646 423 AVL-----SCHVVDWVDI---RQIVTAVCY--RPDGQ-GGIVGS-MMGDCRFYNVS 466 (686)
Q Consensus 423 d~~-----~~~~~~~~~~---~~~V~~v~~--spdg~-~l~~gs-~dg~i~iwd~~ 466 (686)
+.. +++++..... ...+..|++ .++|+ +|++++ .+++..+||..
T Consensus 207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 755 3456655433 346788887 56666 666666 47789999996
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.57 E-value=0.11 Score=54.66 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=77.1
Q ss_pred CCeeEEEeeC-CC-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCCCcEE
Q 005646 355 GEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCHVV 430 (686)
Q Consensus 355 ~~V~~l~~s~-~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~~~~~ 430 (686)
.....|++.+ .+ ++++-...+.|.+.++........+. .-.....|++.|..+.++++-.. .+.|...++......
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 3566788877 44 55555667889999987665544444 44568999999944444444322 378888888765444
Q ss_pred EEec-cCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCe
Q 005646 431 DWVD-IRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNH 469 (686)
Q Consensus 431 ~~~~-~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~ 469 (686)
.+.. .-.....|+++|++..|+.+. ..+.|..+|+....
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 3332 235678999999877776664 46789999987543
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.56 E-value=0.091 Score=53.26 Aligned_cols=113 Identities=10% Similarity=-0.010 Sum_probs=73.9
Q ss_pred CeeEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEE
Q 005646 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVD 431 (686)
Q Consensus 356 ~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~ 431 (686)
....+++.+. + ++++-...+.|.+.++........+. .......++++|.++.++++.... +.|...++.......
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 4467888764 4 44555667899999987654433333 346789999999444444444333 688888876544333
Q ss_pred Ee-ccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCC
Q 005646 432 WV-DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDN 468 (686)
Q Consensus 432 ~~-~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~ 468 (686)
+. ..-.....++++|++..|+.+. ..+.|..+|+...
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 32 2234578999999877666654 4678999998753
No 277
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=0.17 Score=58.39 Aligned_cols=181 Identities=12% Similarity=0.076 Sum_probs=114.4
Q ss_pred CCCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee---CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 353 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~---h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
....|.++...+++.|..|+.++-|..+|..+++...... ....|.++...+ ++. |..|+. +-|..||..+++.
T Consensus 405 ~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 405 LSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLASKKV 481 (781)
T ss_dssp CCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESSSSSC
T ss_pred CCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCCCCeE
Confidence 3467899988888877778887889999988776543321 346799998876 554 555665 5689999988765
Q ss_pred EEEecc------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 430 VDWVDI------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 430 ~~~~~~------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
...... ...|.++...++|++.+ |+..+-+..||..+.+.... ..........|.++...+ ++. |.
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~-----~~~~~l~~~~i~~i~~d~-~g~-lW 553 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKF-----NQYEGFCSNTINQIYRSS-KGQ-MW 553 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEE-----CTTTTCSCSCEEEEEECT-TSC-EE
T ss_pred EecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEc-----cCCCCCCCCeeEEEEECC-CCC-EE
Confidence 544322 35689999999987554 55544588899876654321 111122345688888776 444 44
Q ss_pred EEeCCCcEEEEeCCc------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005646 504 VSCADSQVRILQGPN------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGH 546 (686)
Q Consensus 504 ~~s~D~~I~iwd~~~------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~ 546 (686)
+++.+|-|..||..+ .+...++|.+.++ +.+| |..++..+.
T Consensus 554 i~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 554 LATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKK 612 (781)
T ss_dssp EEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTT
T ss_pred EEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCC
Confidence 444455546666432 1233346665554 4444 666776653
No 278
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=0.11 Score=60.02 Aligned_cols=184 Identities=9% Similarity=0.035 Sum_probs=115.7
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEe---e-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF---P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~---~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
...|.++...++|.|..|+.++-|..||..++...... . ....|.++...+ ++. |..|+.++-|..+|..+++.
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCcE
Confidence 35689998888888888887788999998765433211 1 346789998876 555 44577777799999988776
Q ss_pred EEEec---cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 430 VDWVD---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 430 ~~~~~---~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
..... ....|.++...++|+ |.+|+. +-+..||..+++...... ..........|.++...+ ++ .|.+++
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~d~-~g-~lWigt 512 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYD---TSNSQLLENFVRSIAQDS-EG-RFWIGT 512 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEEC---TTTSSCSCSCEEEEEECT-TC-CEEEEE
T ss_pred EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEeccc---CcccccccceeEEEEEcC-CC-CEEEEE
Confidence 54432 245789999888886 445555 568999987765432110 000011235688888776 44 455555
Q ss_pred CCCcEEEEeCCc------------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 507 ADSQVRILQGPN------------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 507 ~D~~I~iwd~~~------------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.++.|..++..+ .+...++|.+.++ +.+|.|..||..+++
T Consensus 513 ~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 513 FGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFD 570 (781)
T ss_dssp SSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCC
T ss_pred cCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCc
Confidence 544466676432 1223345665554 446655888876654
No 279
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=0.021 Score=61.42 Aligned_cols=111 Identities=9% Similarity=0.101 Sum_probs=70.0
Q ss_pred CeeEEEe-------eCCC-EEEEEECCC-------cEEEEECCC-Ceee-----eEeeCCCCeEEEEEeecCCCEEEEEE
Q 005646 356 EILDLSW-------SKNN-YLLSASIDK-------TVRLWRVGN-DHCL-----RVFPHSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 356 ~V~~l~~-------s~~~-~L~s~s~Dg-------~V~iWd~~~-~~~~-----~~~~h~~~V~~v~fsp~~~~~l~sgs 414 (686)
....|+| ++++ +|+.+...+ .|.+.+... +... ..+..-.....++++|.++.++++-.
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~ 266 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY 266 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC
Confidence 4678888 8888 577666554 255665333 1221 12221123356788995566677777
Q ss_pred cCCcEEEEecC-------CCcE--------------EEEeccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCC
Q 005646 415 IDGKVRIWAVL-------SCHV--------------VDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVS 466 (686)
Q Consensus 415 ~Dg~V~iwd~~-------~~~~--------------~~~~~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~ 466 (686)
.++.|..+|+. ++.. +...........++|+|+|++|+++ +....|+.++..
T Consensus 267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 88899999997 5543 1122223456899999999965554 556788886654
No 280
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.32 E-value=0.043 Score=55.44 Aligned_cols=110 Identities=11% Similarity=0.047 Sum_probs=81.0
Q ss_pred eeEEEe---eCCC-EEEEEE-------------CCCcEEEEECC---CCeeeeEeeC-------------C-CCeEEEEE
Q 005646 357 ILDLSW---SKNN-YLLSAS-------------IDKTVRLWRVG---NDHCLRVFPH-------------S-NYVTCVHF 402 (686)
Q Consensus 357 V~~l~~---s~~~-~L~s~s-------------~Dg~V~iWd~~---~~~~~~~~~h-------------~-~~V~~v~f 402 (686)
+..|.| .|++ ++++.. .+..|..+|+. +++.+....- . .....|+.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 368888 5778 444332 26789999999 7877665541 1 24889999
Q ss_pred eecCCCEEEEEEcC-CcEEEEecCCCcEEEEecc------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 403 NPVDDNYFISGSID-GKVRIWAVLSCHVVDWVDI------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 403 sp~~~~~l~sgs~D-g~V~iwd~~~~~~~~~~~~------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
.+ +++..++++.- +.|..++........+... ....+.|+++|+|+.|++....|.+..+|+..
T Consensus 145 D~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 145 DR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 99 99999999998 8888888765544433311 12367899999999999987799999999873
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.30 E-value=0.037 Score=56.29 Aligned_cols=183 Identities=4% Similarity=-0.034 Sum_probs=115.8
Q ss_pred CeeEEEeeCC-C-EEEEEECCCcEEEEECCCCeee-eEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE
Q 005646 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCL-RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 356 ~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~-~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~ 431 (686)
....++|.+. + ++++-...+.|..+++...... ..+. .-.....+++.+..++++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4568899885 4 4555556788999998766422 2222 334577899987556666666677899999987654333
Q ss_pred Ee-ccCCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 432 WV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 432 ~~-~~~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.. ..-.....+++.|.+..|+.+.. .+.|..+++....... +. .......++|+++|.++.++++-+..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-----~~---~~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-----II---NSEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE-----EE---CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE-----EE---ECCCCCccEEEEeccCCEEEEEECCC
Confidence 33 33456789999997666666553 5788888886533211 10 01124578999999666666666677
Q ss_pred CcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 509 SQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.|..++... .+++. .+..+.+-...+.|..++..+++
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence 8888887531 12222 33444454556677777776554
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.27 E-value=0.13 Score=54.84 Aligned_cols=153 Identities=8% Similarity=0.012 Sum_probs=95.3
Q ss_pred CeeEEEeeCC---CEEEEEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC---Cc-EEEEecCCCc
Q 005646 356 EILDLSWSKN---NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GK-VRIWAVLSCH 428 (686)
Q Consensus 356 ~V~~l~~s~~---~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D---g~-V~iwd~~~~~ 428 (686)
....|+|.|+ +.|+.+...+.|+.+|..++..............|+|+| +++++++.... .. +...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999985 566666555899999998887766665666789999999 88855554321 11 3333332221
Q ss_pred E-EEEeccCCcEEEEEEcc-CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC-eEEEE
Q 005646 429 V-VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS-KVMVS 505 (686)
Q Consensus 429 ~-~~~~~~~~~V~~v~~sp-dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~-~l~~~ 505 (686)
. ......-.....++++| +|.++++-..++.|+.+|..++..... +... .....-..++|+| +++ ++++-
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~--~~~~----~~~~~~~~ia~dp-dG~~LYvad 291 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE--EVMM----DTKGSNFHIVWHP-TGDWAYIIY 291 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE--EEEC----SCCSSCEEEEECT-TSSEEEEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE--Eecc----CCCCCcccEEEeC-CCCEEEEEe
Confidence 1 01111223456788999 676666666678899999876654111 1000 1112235799999 555 55666
Q ss_pred eCCCcEEEEeC
Q 005646 506 CADSQVRILQG 516 (686)
Q Consensus 506 s~D~~I~iwd~ 516 (686)
...+.|+.++.
T Consensus 292 ~~~~~I~~~~~ 302 (433)
T 4hw6_A 292 NGKHCIYRVDY 302 (433)
T ss_dssp TTTTEEEEEEB
T ss_pred CCCCEEEEEeC
Confidence 67788998774
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.24 E-value=0.036 Score=63.69 Aligned_cols=241 Identities=8% Similarity=0.019 Sum_probs=115.7
Q ss_pred eee-cCCCccceeec-----cceEEEEEcCCc-cccccccccCceecccCCceEEEEEeeCCCEEEEEeCC-----CcEE
Q 005646 208 RVR-LNEEDAMFCSK-----VQRVKVYHCKKR-SKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD-----GVVR 275 (686)
Q Consensus 208 ~~s-~~~~~l~~g~~-----d~~v~vw~~~~~-~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----g~I~ 275 (686)
+++ +++++++.+.. ..+|+++++... .. +. ..+.. ....++|+|||+.|+....| ..|.
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~-----~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IA-----DKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CC-----CCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CC-----ccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 567 78887775433 235888887654 21 11 11111 13468899999988877765 2566
Q ss_pred EEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCC-eEEe-ccC
Q 005646 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP-LHEF-HGH 353 (686)
Q Consensus 276 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l-~~h 353 (686)
++++.++.....+ .+............+++++..++..........+.+++...- .... +..+ ...
T Consensus 251 ~~~lgt~~~~~~l----------v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~--~~~~~~~~l~~~~ 318 (751)
T 2xe4_A 251 RHVMGKLQSEDVC----------LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG--NAHNTLEIVRPRE 318 (751)
T ss_dssp EEETTSCGGGCEE----------EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC--TTCCCEEESSCCC
T ss_pred EEECCCCchhcEE----------EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC--CCCceeEEeecCC
Confidence 7777654311111 111111111233445555554444433333333333332211 0011 0223 233
Q ss_pred CCCeeEEEeeCCCEE-EEEECC----CcEEEEECCCC-eeee-EeeCCCCeEEEEEeecCCCEEEEEEcCCcE--EEEec
Q 005646 354 SGEILDLSWSKNNYL-LSASID----KTVRLWRVGND-HCLR-VFPHSNYVTCVHFNPVDDNYFISGSIDGKV--RIWAV 424 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L-~s~s~D----g~V~iWd~~~~-~~~~-~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V--~iwd~ 424 (686)
......+.|+..+.| +....+ ..|..+++.+. .... .+.+...+.--.+.+..+.++++...++.. .++|+
T Consensus 319 ~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 319 KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 455566666655544 444433 25666777652 3333 455554433333444244566677777764 45564
Q ss_pred -------CCCc-EEEEeccCCc--EEEEEE----ccCCCEEE-EEecC---CcEEEEeCCCCee
Q 005646 425 -------LSCH-VVDWVDIRQI--VTAVCY----RPDGQGGI-VGSMM---GDCRFYNVSDNHL 470 (686)
Q Consensus 425 -------~~~~-~~~~~~~~~~--V~~v~~----spdg~~l~-~gs~d---g~i~iwd~~~~~~ 470 (686)
.+++ ... ...... +..+.+ ++++..++ +.+.. ..++.+|+.+++.
T Consensus 399 ~~~~~~~~~g~~~~~-l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 399 DSQDGVFKAGTGLRE-VVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp CTTTSCCCTTTCCEE-CCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred ccccccccCCccceE-ECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 3444 322 222222 333322 34665444 33322 4578888876654
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.19 E-value=0.13 Score=52.26 Aligned_cols=151 Identities=5% Similarity=-0.047 Sum_probs=93.1
Q ss_pred CeeEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEe-eCCCCeEEEEEeecCCCEEEEEE--cCCcEEEEecCCCcEE
Q 005646 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVV 430 (686)
Q Consensus 356 ~V~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~~~V~~v~fsp~~~~~l~sgs--~Dg~V~iwd~~~~~~~ 430 (686)
....+++.+. + ++++-...+.|.+.++........+ ........|++.| .+..|+... ..+.|...++......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSSRF 158 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCeE
Confidence 4567888764 4 4555556788999998755433333 2446679999999 444444444 3578888887654333
Q ss_pred EEe-ccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 431 DWV-DIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 431 ~~~-~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.+. ..-...+.++++|++..|+.+ +..+.|..+|+........ .. .......++++.. +..+.+-...
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~----~~----~~~~~P~glav~~--~~lywtd~~~ 228 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV----VK----GSLPHPFALTLFE--DILYWTDWST 228 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----EC----SCCSCEEEEEEET--TEEEEEETTT
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE----ec----CCCCCceEEEEeC--CEEEEEecCC
Confidence 322 223456899999977666665 4567899999875332211 11 1234467777753 3555555566
Q ss_pred CcEEEEeCC
Q 005646 509 SQVRILQGP 517 (686)
Q Consensus 509 ~~I~iwd~~ 517 (686)
+.|..++..
T Consensus 229 ~~V~~~~~~ 237 (318)
T 3sov_A 229 HSILACNKY 237 (318)
T ss_dssp TEEEEEETT
T ss_pred CeEEEEECC
Confidence 777777754
No 285
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.15 E-value=0.052 Score=54.85 Aligned_cols=163 Identities=8% Similarity=0.097 Sum_probs=106.2
Q ss_pred eccCCCCeeEEEeeCCC-EEEEEE-CCCcEEEEECCCCeeeeE-eeCC-------CCeEEEEE---eecCCCEEEEEEc-
Q 005646 350 FHGHSGEILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRV-FPHS-------NYVTCVHF---NPVDDNYFISGSI- 415 (686)
Q Consensus 350 l~~h~~~V~~l~~s~~~-~L~s~s-~Dg~V~iWd~~~~~~~~~-~~h~-------~~V~~v~f---sp~~~~~l~sgs~- 415 (686)
+......--+++|.+.. .|+.++ ..++|..||...+..... +..- ..+..|.| .| ++.++++...
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccc
Confidence 33444555689998855 666555 799999999986644333 2221 13689999 68 6667765432
Q ss_pred ------------CCcEEEEecC---CCcEEEEeccC--------------CcEEEEEEccCCCEEEEEecC-CcEEEEeC
Q 005646 416 ------------DGKVRIWAVL---SCHVVDWVDIR--------------QIVTAVCYRPDGQGGIVGSMM-GDCRFYNV 465 (686)
Q Consensus 416 ------------Dg~V~iwd~~---~~~~~~~~~~~--------------~~V~~v~~spdg~~l~~gs~d-g~i~iwd~ 465 (686)
+..|..||+. +++.+...... .....++..++|+..++++.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 6789999999 77766544421 247899999999999999888 88888777
Q ss_pred CCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
....... +.............++++++| +|+.|++...+|.+..+|+.
T Consensus 167 dG~~~~~---~~~~~~~~~~~~G~nGIv~~p----------------------------dg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 167 DGKTVST---FAWESGNGGQRPGYSGITFDP----------------------------HSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp TSCCEEE---EEECCCCSSSCCSCSEEEEET----------------------------TTTEEEEESSSSSEEEEECS
T ss_pred CCCEEee---eeecCCCcccccCcceEEEeC----------------------------CCCEEEEEcCCCeEEEEcCC
Confidence 6543221 111111112233467888888 66666666557777777766
No 286
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.15 E-value=0.38 Score=57.65 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=52.6
Q ss_pred cCcceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC------CCEEEEEeC-CCcEE
Q 005646 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------GQYLASAGD-DGVVR 275 (686)
Q Consensus 203 ~~~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~-Dg~I~ 275 (686)
...+...+.++.+++.+. ++.+.++.++... +... ...+ -...|.|+++.|. ++++|.|.. |++|+
T Consensus 513 ~~~I~~As~n~~~vvva~-g~~l~~fel~~~~--L~~~-~~~~---l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~ 585 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVAV-GRALYYLQIHPQE--LRQI-SHTE---MEHEVACLDITPLGDSNGLSPLCAIGLWTDISAR 585 (1158)
T ss_dssp CCCCCEEEECSSEEEEEE-TTEEEEEEEETTE--EEEE-EEEE---CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEE
T ss_pred CCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCc--eeee-cccC---CCCceEEEEeecCCCCcccccEEEEEECCCCEEE
Confidence 345556666677777774 6677777665421 2111 1112 2457999999863 369999996 99999
Q ss_pred EEEeecCeeeeeecc
Q 005646 276 LWQVVEDERLTEVDI 290 (686)
Q Consensus 276 vWd~~~~~~~~~~~~ 290 (686)
|+++.+.+.+.....
T Consensus 586 I~sL~~l~~~~~~~L 600 (1158)
T 3ei3_A 586 ILKLPSFELLHKEML 600 (1158)
T ss_dssp EEETTTCCEEEEEEC
T ss_pred EEECCCCCeEEEEEC
Confidence 999987665544443
No 287
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.15 E-value=0.012 Score=65.41 Aligned_cols=59 Identities=15% Similarity=0.012 Sum_probs=42.5
Q ss_pred CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeee
Q 005646 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (686)
Q Consensus 416 Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~ 474 (686)
+|.|.-||+.+++++-......++..-.....+..+++|+.||.++.||..+++.....
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 58899999999998744443333322222235668888999999999999999876543
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.10 E-value=0.41 Score=54.93 Aligned_cols=115 Identities=10% Similarity=-0.016 Sum_probs=77.3
Q ss_pred CCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEE
Q 005646 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVV 430 (686)
Q Consensus 355 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~ 430 (686)
.....|++.+.+ ++++-...+.|.+.++........+. .-.....|++.|..+.++++-... +.|...++......
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 345678887655 55555667899999987655444443 445689999999434444443333 78888888766554
Q ss_pred EEecc-CCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCe
Q 005646 431 DWVDI-RQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNH 469 (686)
Q Consensus 431 ~~~~~-~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~ 469 (686)
.+... -.....|++++.+..|+.+. ..+.|..+++....
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 44433 25688999998777666654 45679999987544
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.07 E-value=0.24 Score=50.34 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=64.6
Q ss_pred CCCCeeEEEeeCCCEEEEEECCCcEEE-EEC--CCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE
Q 005646 353 HSGEILDLSWSKNNYLLSASIDKTVRL-WRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (686)
Q Consensus 353 h~~~V~~l~~s~~~~L~s~s~Dg~V~i-Wd~--~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~ 429 (686)
+...+..+.+.+++.++..+.++.+.. +|- .+-+.+ .......+..+.+.| ++.++ .++.+|.+++.+...++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCCCe
Confidence 344678888988884444445555444 342 122222 122567889999988 66655 556688887764332332
Q ss_pred EEEec-----cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 430 VDWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 430 ~~~~~-----~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
-.... ....+.++.+.++++.++++ .+|.+ ++....+
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG 279 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGG 279 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTT
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCC
Confidence 22111 12358899999988777766 46766 3444433
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.91 E-value=0.11 Score=52.85 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=68.1
Q ss_pred CCcEEEEECC--CCeeeeEee-------CC-CCeEEEEE--eecCCC-EEEEEEcCCcEEEEecC-------CCcEEEEe
Q 005646 374 DKTVRLWRVG--NDHCLRVFP-------HS-NYVTCVHF--NPVDDN-YFISGSIDGKVRIWAVL-------SCHVVDWV 433 (686)
Q Consensus 374 Dg~V~iWd~~--~~~~~~~~~-------h~-~~V~~v~f--sp~~~~-~l~sgs~Dg~V~iwd~~-------~~~~~~~~ 433 (686)
+.+|++|++. +++ +..+. .. ..+..+++ +|..+. ++++...+|.+..|++. +.+++..+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5789999773 433 44442 11 56677887 663444 68888889999999983 34566777
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~ 466 (686)
.....+..+.+.+....|+++-.+..|..|+..
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred cCCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 788899999999988899999998777777754
No 291
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.88 E-value=0.029 Score=62.42 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=69.5
Q ss_pred EEEEECCCcEEEEECCCCeeeeEeeCCC-----CeEEE-EEeecCCCEEEEEE------cCCcEEEEecCCCcEEEEecc
Q 005646 368 LLSASIDKTVRLWRVGNDHCLRVFPHSN-----YVTCV-HFNPVDDNYFISGS------IDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 368 L~s~s~Dg~V~iWd~~~~~~~~~~~h~~-----~V~~v-~fsp~~~~~l~sgs------~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
|+.++.|+.|.-+|..+++.+....... .+++- .. - + ..++.++ .+|.|+-+|..+++.+-....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-V-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-E-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-E-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 8888899999999999999988766222 22221 11 1 3 4555555 389999999999998743332
Q ss_pred CCcE---------------------------------------EEEEEccCCCEEEEEecCC----------------cE
Q 005646 436 RQIV---------------------------------------TAVCYRPDGQGGIVGSMMG----------------DC 460 (686)
Q Consensus 436 ~~~V---------------------------------------~~v~~spdg~~l~~gs~dg----------------~i 460 (686)
.... ..+++.++...++.++.++ .|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 2111 1356777777888887653 78
Q ss_pred EEEeCCCCeeee
Q 005646 461 RFYNVSDNHLEL 472 (686)
Q Consensus 461 ~iwd~~~~~~~~ 472 (686)
..+|..+++...
T Consensus 281 ~Ald~~TG~~~W 292 (599)
T 1w6s_A 281 FGRDADTGEAKF 292 (599)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEeCCCCceee
Confidence 888888887654
No 292
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.88 E-value=0.1 Score=54.89 Aligned_cols=158 Identities=8% Similarity=-0.037 Sum_probs=102.6
Q ss_pred cCCCCeeEEEeeCCC-EE-EEEECCCcEEEEECCCC----eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEec
Q 005646 352 GHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGND----HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (686)
Q Consensus 352 ~h~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWd~~~~----~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~ 424 (686)
.....+..|+|++.+ .| ++-...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 345678899999855 44 45456788999998752 2233333 44568899999855666666667889999999
Q ss_pred CCCcEEEEec-cCCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCe
Q 005646 425 LSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (686)
Q Consensus 425 ~~~~~~~~~~-~~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~ 501 (686)
.......... .-.....|+++|.+..|+.... .+.|...++........ . ........+|++.+.++.+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~----~----~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE----E----CSSCSCEEEEEEETTTTEE
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE----E----ECCCCceEEEEEEeCCCEE
Confidence 8765544443 3345789999997666666543 37899888875432211 1 1122457899999855555
Q ss_pred EEEEeCCCcEEEEeCC
Q 005646 502 VMVSCADSQVRILQGP 517 (686)
Q Consensus 502 l~~~s~D~~I~iwd~~ 517 (686)
+++-...+.|..+|..
T Consensus 261 Y~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVN 276 (400)
T ss_dssp EEEETTTTEEEEEETT
T ss_pred EEEECCCCEEEEEeCC
Confidence 5555566777777743
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.82 E-value=0.21 Score=57.25 Aligned_cols=160 Identities=8% Similarity=-0.040 Sum_probs=104.1
Q ss_pred eccCCCCeeEEEeeCCC--EEEEEECCCcEEEEECCCC----eeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 350 FHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGND----HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 350 l~~h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~----~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
+......+..|+|.+.. ++++-...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 33345667899999854 4455556688999998753 2233333 445678899998455666676778899999
Q ss_pred ecCCCcEEEEec-cCCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCC
Q 005646 423 AVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (686)
Q Consensus 423 d~~~~~~~~~~~-~~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~ 499 (686)
++.......+.. .-.....|++.|.+.+|+.... .+.|...++........ + ........+|++.+..+
T Consensus 499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l----v----~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSG 570 (791)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE----E----CSSCSCEEEEEEETTTT
T ss_pred eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE----E----eCCCCCceEEEEecCCC
Confidence 998766544443 3345889999998666666543 26788888875443211 1 11235688999998565
Q ss_pred CeEEEEeCCCcEEEEeCC
Q 005646 500 SKVMVSCADSQVRILQGP 517 (686)
Q Consensus 500 ~~l~~~s~D~~I~iwd~~ 517 (686)
.++++-.....|..++..
T Consensus 571 ~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred eEEEEeCCCCcEEEEecC
Confidence 556665667788888753
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.67 E-value=0.63 Score=49.97 Aligned_cols=107 Identities=9% Similarity=-0.012 Sum_probs=65.7
Q ss_pred eEEEeeCCC--EEEEEECCCcEEEEECC-------CCee-----------eeE-ee--CCCCeEEEEEeecCCCE-EEEE
Q 005646 358 LDLSWSKNN--YLLSASIDKTVRLWRVG-------NDHC-----------LRV-FP--HSNYVTCVHFNPVDDNY-FISG 413 (686)
Q Consensus 358 ~~l~~s~~~--~L~s~s~Dg~V~iWd~~-------~~~~-----------~~~-~~--h~~~V~~v~fsp~~~~~-l~sg 413 (686)
..++++|++ ++++-..++.|..+|+. ++.. +.. +. .......|+|+| ++++ +++-
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD 328 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGV 328 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEE
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEe
Confidence 567888954 55556677889999987 5543 112 22 334568999999 8885 4554
Q ss_pred EcCCcEEEEecC--CCcE---EEEecc---C------------CcEE-EEEEc-------cCCCEEEEEecCCcEEEEeC
Q 005646 414 SIDGKVRIWAVL--SCHV---VDWVDI---R------------QIVT-AVCYR-------PDGQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 414 s~Dg~V~iwd~~--~~~~---~~~~~~---~------------~~V~-~v~~s-------pdg~~l~~gs~dg~i~iwd~ 465 (686)
+....|+.++.. ++.+ ..+.+. . .... .++.. ++|.++++=.....|+.++.
T Consensus 329 ~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 329 INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 567889986653 3332 112111 0 1234 45554 56666666667788888884
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.60 E-value=1.3 Score=49.36 Aligned_cols=151 Identities=5% Similarity=-0.057 Sum_probs=93.1
Q ss_pred CeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEe-eCCCCeEEEEEeecCCCEEEEE-EcCCcEEEEecCCCcEEE
Q 005646 356 EILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISG-SIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 356 ~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~~~V~~v~fsp~~~~~l~sg-s~Dg~V~iwd~~~~~~~~ 431 (686)
....|++.+.+ ++++-...+.|.+.++........+ ..-.....|++.|..+.++++- +..+.|...++.......
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence 34567777554 4455556778999988755433333 2445679999999444444443 225678888887655444
Q ss_pred EeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 432 WVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 432 ~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
+...-.....|+++++++.|+.+. ..+.|..+|+....... +.. ......++++.. +.++++-...+.
T Consensus 161 l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v-----~~~----~l~~P~glav~~--~~ly~tD~~~~~ 229 (628)
T 4a0p_A 161 LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREV-----IAD----DLPHPFGLTQYQ--DYIYWTDWSRRS 229 (628)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-----EEE----CCSCEEEEEEET--TEEEEEETTTTE
T ss_pred EECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEE-----eec----cCCCceEEEEEC--CEEEEecCCCCE
Confidence 444455678999999877666654 46789999987644321 111 123356777764 344444445677
Q ss_pred EEEEeCC
Q 005646 511 VRILQGP 517 (686)
Q Consensus 511 I~iwd~~ 517 (686)
|...|..
T Consensus 230 I~~~dk~ 236 (628)
T 4a0p_A 230 IERANKT 236 (628)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 7777743
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.58 E-value=0.0053 Score=69.96 Aligned_cols=155 Identities=6% Similarity=-0.036 Sum_probs=97.6
Q ss_pred CCeeEEEeeCCC-EEEEE-ECCCcEEEEECCC----CeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 355 GEILDLSWSKNN-YLLSA-SIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~s~-s~Dg~V~iWd~~~----~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
..+..|+|.+.+ .|+.+ ...+.|+.+++.. ......+. .......|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456788999865 55544 4568899999875 22222222 22345678888645666666666789999998876
Q ss_pred cEEEEecc-CCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 428 HVVDWVDI-RQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 428 ~~~~~~~~-~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
....+... ......|+++|.+.+|+.+.. .+.|..+++....... + ........++|+|+|.++.++++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~-----l---~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-----L---VTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE-----E---SCSSCSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE-----E---EeCCCCCccEEEEeccCCEEEEE
Confidence 55544432 244678899997665555443 2678888776432211 0 01122456789999966667777
Q ss_pred EeCCCcEEEEeCC
Q 005646 505 SCADSQVRILQGP 517 (686)
Q Consensus 505 ~s~D~~I~iwd~~ 517 (686)
-...+.|.+++..
T Consensus 558 D~~~~~I~~~d~d 570 (699)
T 1n7d_A 558 DSKLHSISSIDVN 570 (699)
T ss_dssp ETTTTEEEEECSS
T ss_pred ecCCCeEEEEccC
Confidence 7777888888753
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.58 E-value=0.87 Score=50.81 Aligned_cols=183 Identities=9% Similarity=-0.033 Sum_probs=118.4
Q ss_pred CCeeEEEeeCCC-E-EEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEE
Q 005646 355 GEILDLSWSKNN-Y-LLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (686)
Q Consensus 355 ~~V~~l~~s~~~-~-L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~ 431 (686)
..+..|+|++.+ . +++-..++.|..+++........+. .......|++.+..++++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 456789999865 4 4455567899999987654444444 224678899988456666666667889999987654333
Q ss_pred Ee-ccCCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 432 WV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 432 ~~-~~~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
+. ..-.....|++.|....|+.... .+.|...++........ . .......+|++.+..+.++++-...
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l----~-----~~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL----V-----PNVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E-----CSCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE----E-----CCCCCcceEEEccccCEEEEEECCC
Confidence 32 33345789999996556665543 56788888765443211 1 1235688999999555566666677
Q ss_pred CcEEEEeCCc--------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 509 SQVRILQGPN--------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 509 ~~I~iwd~~~--------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
+.|..++... .++++. +..++|-...+.|...|..+++
T Consensus 188 ~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 188 NLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 8888887532 133332 4445555567788888876664
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.25 E-value=0.031 Score=63.57 Aligned_cols=111 Identities=11% Similarity=0.002 Sum_probs=67.5
Q ss_pred eEEEeeCC-C-EEEEEECCCcEEEEECCCCeeeeEee-CCCCeEEEEEeecCCCEEEEEEcC-CcEEEEecCCCcEEEEe
Q 005646 358 LDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVDWV 433 (686)
Q Consensus 358 ~~l~~s~~-~-~L~s~s~Dg~V~iWd~~~~~~~~~~~-h~~~V~~v~fsp~~~~~l~sgs~D-g~V~iwd~~~~~~~~~~ 433 (686)
..|++.+. + ++++-...+.|.+.++........+. .......|++.|..+.++++-... +.|..+++.......+.
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 45666643 3 44444567889999987654443333 234567889998445555544333 67888877643322222
Q ss_pred -ccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCC
Q 005646 434 -DIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDN 468 (686)
Q Consensus 434 -~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~ 468 (686)
..-...+.|+|+|++..|+.+ +..+.|..+++...
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 112346789999976655554 45678999998653
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.21 E-value=0.8 Score=46.96 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=66.3
Q ss_pred eeEEEeeC--CC--EEEEEEC---CCcEEEEECCCC--e--eeeEeeC--CCCeEEEEEeecCCCEEEEEEc--------
Q 005646 357 ILDLSWSK--NN--YLLSASI---DKTVRLWRVGND--H--CLRVFPH--SNYVTCVHFNPVDDNYFISGSI-------- 415 (686)
Q Consensus 357 V~~l~~s~--~~--~L~s~s~---Dg~V~iWd~~~~--~--~~~~~~h--~~~V~~v~fsp~~~~~l~sgs~-------- 415 (686)
...+.+.+ ++ +|+.+.. +.+|.+|++... . .+..+.+ -...+.+.+.+ ++.++++...
T Consensus 114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHH
T ss_pred eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccc
Confidence 34455443 33 4544432 467888877653 2 2223332 35689999999 8887776541
Q ss_pred ---------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCCEEEEEe-cCCcEEEEeCCC
Q 005646 416 ---------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSD 467 (686)
Q Consensus 416 ---------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs-~dg~i~iwd~~~ 467 (686)
.|.|.-+|. +++......-...+.++|+||++.++++. ..+.|+.|++..
T Consensus 193 ~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp HHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 244555554 33333333334578999999998877764 578899999864
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.15 E-value=1.3 Score=44.71 Aligned_cols=177 Identities=9% Similarity=0.065 Sum_probs=94.6
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEe--eCCCCeEEEEEeecCCCEEEEEEcCCcEE-EEec--CCCcE
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVR-IWAV--LSCHV 429 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~--~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~-iwd~--~~~~~ 429 (686)
+.+..+.+.+++.++.++.++.|..- .+.++.-... .+...+..+++.| ++.+++.+. +|.+. -+|- .+-+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 45677887777744455556654321 2223322222 2566789999998 777776654 45443 3442 22223
Q ss_pred EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC
Q 005646 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (686)
Q Consensus 430 ~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~ 509 (686)
+. ......+..+.+.++++.+++ +.+|.+++.+...++.-.. ...........+..+.+.+ ++..++ ++.++
T Consensus 199 ~~-~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~----~~~~~~~~~~~~~~v~~~~-~~~~~~-~g~~g 270 (327)
T 2xbg_A 199 HN-RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGE----LLSPLRRNSVGFLDLAYRT-PNEVWL-AGGAG 270 (327)
T ss_dssp EE-CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECC----CBCTTSSCCSCEEEEEESS-SSCEEE-EESTT
T ss_pred CC-CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEe----ccCCcccCCcceEEEEecC-CCEEEE-EeCCC
Confidence 32 234567889999999876654 4678877764322221100 0000011223588888887 444444 44566
Q ss_pred cEEEE-e-C-----C----------cceeEcCCCCEEEEEeCCCcEEEEeC
Q 005646 510 QVRIL-Q-G-----P----------NVIGKYKDGKHIVSAGEDSNVYMWNC 543 (686)
Q Consensus 510 ~I~iw-d-~-----~----------~~~~~~~dg~~l~sgs~Dg~V~iWd~ 543 (686)
.|..- | + . ..+.+. ++..++.++.+|.|.-++-
T Consensus 271 ~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~-~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 271 ALLCSQDGGQTWQQDVDVKKVPSNFYKILFF-SPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp CEEEESSTTSSCEECGGGTTSSSCCCEEEEE-ETTEEEEECSTTEEEEECC
T ss_pred eEEEeCCCCcccEEcCccCCCCCCeEEEEEE-CCCceEEEcCCceEEEEcC
Confidence 66432 2 1 1 013333 3344666677887776654
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.15 E-value=1.1 Score=45.93 Aligned_cols=70 Identities=10% Similarity=0.207 Sum_probs=37.5
Q ss_pred ceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeC---CCEEEEEeC-C-----CcEEE
Q 005646 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD---GQYLASAGD-D-----GVVRL 276 (686)
Q Consensus 206 ~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~-D-----g~I~v 276 (686)
...+.+++. +.++...++|++++ ......+..+ ..+.........|+|+|+ +.+|..+.. . ..|..
T Consensus 35 ~ia~~pdG~-l~V~e~~g~I~~i~-~g~~~~~~~~---~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 35 ALAFLPDGG-MLIAERPGRIRLFR-EGRLSTYAEL---SVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEECTTSC-EEEEETTTEEEEEE-TTEEEEEEEC---CCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred EEEEcCCCe-EEEEeCCCeEEEEE-CCCccEeecc---eEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 345667776 44455668999887 3221111111 112223457899999998 444444332 2 44555
Q ss_pred EEee
Q 005646 277 WQVV 280 (686)
Q Consensus 277 Wd~~ 280 (686)
++..
T Consensus 110 ~~~~ 113 (352)
T 2ism_A 110 LRHL 113 (352)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 5554
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.07 E-value=1.5 Score=48.90 Aligned_cols=152 Identities=5% Similarity=-0.060 Sum_probs=88.9
Q ss_pred CCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEe-eCCCCeEEEEEeecCCCEEEEEE-cCCcEEEEecCCCcEE
Q 005646 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVV 430 (686)
Q Consensus 355 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~-~h~~~V~~v~fsp~~~~~l~sgs-~Dg~V~iwd~~~~~~~ 430 (686)
.....|++.+.+ ++++-...+.|.+.++........+ ..-.....|++.|..+.++++-- ..+.|...++......
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 356788888854 4455556789999998765443333 24456788999994444444432 2466777777654333
Q ss_pred EEe-ccCCcEEEEEEccCCCEEEEE-ecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 431 DWV-DIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 431 ~~~-~~~~~V~~v~~spdg~~l~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
.+. ..-...+.|+++++++.|+.+ ...+.|..+|+.......... . ......+|++.. + ..+.+-...
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~----~----~~~~P~gi~~~~-~-~ly~td~~~ 233 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK----G----SLPHPFALTLFE-D-ILYWTDWST 233 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------------CCCEEESS-S-EEEEECTTT
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe----C----CCCCceEEEEeC-C-EEEEecCCC
Confidence 332 233457899999976666655 446789999987654332111 0 112234566654 2 344444456
Q ss_pred CcEEEEeC
Q 005646 509 SQVRILQG 516 (686)
Q Consensus 509 ~~I~iwd~ 516 (686)
+.|...|.
T Consensus 234 ~~V~~~d~ 241 (619)
T 3s94_A 234 HSILACNK 241 (619)
T ss_dssp CSEEEEES
T ss_pred CEEEEEEC
Confidence 66777664
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.95 E-value=0.95 Score=50.41 Aligned_cols=184 Identities=5% Similarity=-0.029 Sum_probs=114.5
Q ss_pred CCeeEEEeeCCC-EEE-EEECCCcEEEEECCCCee-eeEee-CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 355 GEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 355 ~~V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~-~~~~~-h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
.....|+|++.+ .|+ +-...+.|..+++..... ...+. .-.....|++.+..++++++-...+.|.+.++......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 456789999855 554 444567888888876532 22333 23678999999845556666667789999999876543
Q ss_pred EEe-ccCCcEEEEEEccCCCEEEEEec--CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 431 DWV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 431 ~~~-~~~~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
.+. ..-.....|++.|.+..|+.... .+.|...++........ . .......++|++.+.++.++++-..
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l----~----~~~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII----I----NSEIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE----E----eCCCCCCcEEEEEccCCEEEEEeCC
Confidence 333 33345678999997666665543 45677777764332210 1 1123568899999965666666667
Q ss_pred CCcEEEEeCCc---------------ceeEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 005646 508 DSQVRILQGPN---------------VIGKYKDGKHIVSAGEDSNVYMWNCIGHE 547 (686)
Q Consensus 508 D~~I~iwd~~~---------------~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~ 547 (686)
.+.|..++... .++++.+ ...++-...+.|...|..+++
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp TCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 78888887532 2333333 444444566788888887765
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.78 E-value=2.1 Score=43.88 Aligned_cols=110 Identities=11% Similarity=0.160 Sum_probs=67.8
Q ss_pred CeeEEEeeCCC-EEEEEEC---C------------CcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEE-cCCc
Q 005646 356 EILDLSWSKNN-YLLSASI---D------------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGK 418 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~---D------------g~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs-~Dg~ 418 (686)
..+++.+.++| +.++... | ..-+||.+..+++......-...+.|+|+| +++.|+.+. ..+.
T Consensus 166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~sp-Dg~~lYvadt~~~~ 244 (355)
T 3sre_A 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISP-DGKYVYIAELLAHK 244 (355)
T ss_dssp SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECT-TSSEEEEEEGGGTE
T ss_pred CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECC-CCCEEEEEeCCCCe
Confidence 46788888888 4444321 1 223444444444333333445679999999 887766655 5788
Q ss_pred EEEEecCC-CcEE--EEeccCCcEEEEEEcc-CCCEEEEEecC-CcEEEEeCC
Q 005646 419 VRIWAVLS-CHVV--DWVDIRQIVTAVCYRP-DGQGGIVGSMM-GDCRFYNVS 466 (686)
Q Consensus 419 V~iwd~~~-~~~~--~~~~~~~~V~~v~~sp-dg~~l~~gs~d-g~i~iwd~~ 466 (686)
|+.|++.. +.+. ..+......-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 245 I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 245 IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 99999863 3332 2334456778899999 59877766544 345555543
No 305
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.73 E-value=0.13 Score=48.57 Aligned_cols=136 Identities=10% Similarity=0.056 Sum_probs=83.7
Q ss_pred EEEEEECCCcEEEEECCCCe------eeeEeeC--CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc
Q 005646 367 YLLSASIDKTVRLWRVGNDH------CLRVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~~------~~~~~~h--~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~ 438 (686)
+|+....| +|+.=-+..+. ....+.+ =..++.++|+| ++.+.+. .+|.++-.+..+.....+......
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 56677777 65554444443 2233443 25788999999 8887776 788887777766444444433333
Q ss_pred E--------EEEEEccCCCEEEEEecCCcEEEEeCCCCeee---eeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 439 V--------TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE---LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 439 V--------~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
| .++.|.|+|.+.++ .||.|+-++-.+.... .... .+. ..--..+..|.|.| ++.+.++.
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~-~vg---~~gw~~~~~lff~p-~G~Lyav~-- 152 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARAT-EVG---SGGWSGFKFLFFHP-NGYLYAVH-- 152 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSE-EEE---CSSGGGEEEEEECT-TSCEEEEE--
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceecccc-Eec---cCCCCceEEEEECC-CceEEEEe--
Confidence 3 78999999988877 6698887775332110 0000 000 11114578999999 77777777
Q ss_pred CCcEEEEe
Q 005646 508 DSQVRILQ 515 (686)
Q Consensus 508 D~~I~iwd 515 (686)
|+.+.-..
T Consensus 153 dg~lyr~~ 160 (236)
T 1tl2_A 153 GQQFYKAL 160 (236)
T ss_dssp TTEEEEEC
T ss_pred CCcEEecC
Confidence 77764443
No 306
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.70 E-value=1.2 Score=45.59 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=21.6
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEEe
Q 005646 251 GSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (686)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~vWd~ 279 (686)
...+.|+|.|+|++|+.+...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 35689999999983444556788888874
No 307
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.39 E-value=6.5 Score=47.04 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=75.2
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCCCeeee--EeeCCCCeEEEEEeecC-----CCEEEEEEc-CCcEEEEecCC
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVD-----DNYFISGSI-DGKVRIWAVLS 426 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~--~~~h~~~V~~v~fsp~~-----~~~l~sgs~-Dg~V~iwd~~~ 426 (686)
..|...+.+. .+++.++ ++.+.++++..++... .......|.|+++.|.. .++++.|.. |++|+|+++.+
T Consensus 514 ~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 514 KNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 3577666554 3455444 5788888887664332 22356789999998732 479999996 99999999998
Q ss_pred CcEEEEeccC--CcEEEEEEcc--CCCEEEEEecCCcEEEEeCC
Q 005646 427 CHVVDWVDIR--QIVTAVCYRP--DGQGGIVGSMMGDCRFYNVS 466 (686)
Q Consensus 427 ~~~~~~~~~~--~~V~~v~~sp--dg~~l~~gs~dg~i~iwd~~ 466 (686)
.+.+...... ..+.++++.. ...+|.+|-.||.+.-+.+.
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 7777555543 3555555543 33578899999998666654
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.37 E-value=0.36 Score=50.29 Aligned_cols=146 Identities=12% Similarity=0.118 Sum_probs=94.6
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCeeeeEeeCC-----CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCc--------
Q 005646 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS-----NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-------- 428 (686)
Q Consensus 363 s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~h~-----~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~-------- 428 (686)
+.+| .|+.+- ++.||.-++......+.+... ..|..+..+| +|++|+..+ +..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 3444 444443 478888888755445555532 2688899999 999998886 5689999887332
Q ss_pred ----EEEEec-------cCCcEEEEEEcc---CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc-----ccCCCCCe
Q 005646 429 ----VVDWVD-------IRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK-----KKAPCKRI 489 (686)
Q Consensus 429 ----~~~~~~-------~~~~V~~v~~sp---dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~I 489 (686)
...... ...+|..+.|+| .+..|++-..|+.|++||+........ .+... .......|
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---EESCCCSEEESCSSCCCE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---chhccccccCCCcccceE
Confidence 011111 246799999999 456899999999999999986221111 11110 11223668
Q ss_pred EEEEEeCCCCCeEEEEe--CCCcEEEEe
Q 005646 490 TGFQFLPQDSSKVMVSC--ADSQVRILQ 515 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s--~D~~I~iwd 515 (686)
.+++|.+ ++-.|.+.+ ..|.|+-.-
T Consensus 183 ~S~~Fg~-~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 183 TDLEFSK-DGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred EEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence 8999998 566666644 667776553
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.37 E-value=0.64 Score=46.21 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=92.1
Q ss_pred EEEEEECC-----CcEEEEECCCCe---eeeE--eeCCCCeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcEEE
Q 005646 367 YLLSASID-----KTVRLWRVGNDH---CLRV--FPHSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVD 431 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~---~~~~--~~h~~~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~~~ 431 (686)
+++.|+.+ ..+.+||+.+.+ .... +.....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 142 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-L-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM 142 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-E-CCEEEEEcccCCCcccceEEEEcCCCCeEEE
Confidence 55555544 468899988766 3322 222111122222 2 67777887754 358899998876443
Q ss_pred EeccCC---cEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 432 WVDIRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 432 ~~~~~~---~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
...... ...++.+ +++.++.|+.+ ..+.+||+.+++......+ .........+.+ ++.+++
T Consensus 143 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~------p~~r~~~~~~~~---~~~i~v 211 (301)
T 2vpj_A 143 LGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM------ATKRSGAGVALL---NDHIYV 211 (301)
T ss_dssp EEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC------SSCCBSCEEEEE---TTEEEE
T ss_pred CCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC------CcccccceEEEE---CCEEEE
Confidence 332221 1222222 67788887764 4589999988876543211 111111122222 456777
Q ss_pred EEeCC-----CcEEEEeCCcc----e-----------eEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 005646 504 VSCAD-----SQVRILQGPNV----I-----------GKYKDGKHIVSAGED-----SNVYMWNCIGH 546 (686)
Q Consensus 504 ~~s~D-----~~I~iwd~~~~----~-----------~~~~dg~~l~sgs~D-----g~V~iWd~~~~ 546 (686)
.|+.+ ..+.+||..+. + +..-+++.++.|+.+ ..|.+||+.+.
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 77764 46888887542 1 111166777777655 35677777664
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.25 E-value=1 Score=44.65 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=91.5
Q ss_pred EEEEEECC-----CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC-----cEEEEecCCCcEEEEec
Q 005646 367 YLLSASID-----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg-----~V~iwd~~~~~~~~~~~ 434 (686)
+++.|+.+ ..+.+||..+.+....-. ....-.+++. - ++.+++.|+.++ .+.+||+.+.+-.....
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 141 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP 141 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-E-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC
Confidence 55555543 358889988876543322 2111122222 2 677888888664 57888988876444332
Q ss_pred cCCc---EEEEEEccCCCEEEEEecC-------CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 435 IRQI---VTAVCYRPDGQGGIVGSMM-------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 435 ~~~~---V~~v~~spdg~~l~~gs~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
...+ ..++. -+++.++.|+.+ ..+.+||+.+++......+ ....... ++... ++.+++.
T Consensus 142 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~-~~~~~--~~~iyv~ 210 (302)
T 2xn4_A 142 MNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM------STRRSGA-GVGVL--NNLLYAV 210 (302)
T ss_dssp CSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCC------SSCCBSC-EEEEE--TTEEEEE
T ss_pred CCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC------ccccccc-cEEEE--CCEEEEE
Confidence 2221 22222 267777777653 4589999988876543211 1111111 22222 4577777
Q ss_pred EeCC-----CcEEEEeCCcc----e-----------eEcCCCCEEEEEeCCC-----cEEEEeCCCC
Q 005646 505 SCAD-----SQVRILQGPNV----I-----------GKYKDGKHIVSAGEDS-----NVYMWNCIGH 546 (686)
Q Consensus 505 ~s~D-----~~I~iwd~~~~----~-----------~~~~dg~~l~sgs~Dg-----~V~iWd~~~~ 546 (686)
|+.+ ..+.+||..+. + ...-+++.++.|+.++ .|.+||+.+.
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 7764 36888886542 1 1111666777776553 3677777654
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.19 E-value=3.3 Score=42.39 Aligned_cols=65 Identities=12% Similarity=-0.051 Sum_probs=37.5
Q ss_pred CCcEEEEEEc-------cCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEE
Q 005646 436 RQIVTAVCYR-------PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 436 ~~~V~~v~~s-------pdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
...+..++|. .+|+++++.-..+.|...++.......... .+ ......++.++++.| ++.++++.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~-~~---~~~~~~rp~~v~~~p-DG~lyv~~ 329 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS-TF---FKNVFGRLRDVVIDD-DGGILIST 329 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE-EE---CTTTSCCEEEEEECT-TSCEEEEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee-ee---ccCCCCCeeEEEECC-CCcEEEEE
Confidence 3457788883 577777766667788888887532111111 11 111235688999988 44444443
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.99 E-value=3.4 Score=41.48 Aligned_cols=76 Identities=8% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc-CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
.+...+++.++ ....++.-..-|.|.+||+.++.++..... .+.|...+.......++.-...|.|.--.++...+
T Consensus 259 ~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 259 NDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp TCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred CCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 56778899998 788999999999999999999999866554 45566556666656677777889888777776554
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.97 E-value=0.79 Score=47.73 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=87.5
Q ss_pred CCCEEEEEEcCCcEEEEecCCCcEEEEeccC-----CcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeee-------
Q 005646 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-----QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD------- 473 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~-----~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~------- 473 (686)
++..++.+- ++.||.-++............ ..|..+..+|+|++||..+ +..|.|-.+..+.....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 555555544 577888777643322222222 2577899999999999884 45899999874321111
Q ss_pred e---eEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCCCCCC-C
Q 005646 474 A---EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCIGHEE-P 549 (686)
Q Consensus 474 ~---~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~~~~~-~ 549 (686)
. ...+......+..+|..+.|+|-. ..+..|++-..|+.|++||+..... +
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~-------------------------~~ds~LVVLtsD~~Ir~yDl~~s~~~P 163 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKS-------------------------YRDSCIVVLKEDDTITMFDILNSQEKP 163 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTB-------------------------GGGCEEEEEETTSCEEEEETTCTTSCC
T ss_pred cceeEEEcCCcccCCCCceeEEEecccc-------------------------CCCCeEEEEecCCEEEEEEcccCCCCC
Confidence 0 111111111135678888898821 1567788888888999999886331 2
Q ss_pred Ccccccccccc--ccccC-CcEEEecCCCCcCCCCC--CCCcccc
Q 005646 550 AHDQAKTIRSL--ERFTT-NASIAIPWCGLKCGNAE--KEPQLHV 589 (686)
Q Consensus 550 ~~~~~~~~~~~--~~~~~-~~~v~~s~~g~~~~~~~--~g~~l~~ 589 (686)
.... +....+ ..... ..+++|..+|.++|-.. .+..+..
T Consensus 164 ~~L~-k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 164 IVLN-KPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEES-CCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cchh-ccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 2111 111111 11112 45777877777777633 4444433
No 314
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.89 E-value=3.5 Score=44.40 Aligned_cols=96 Identities=13% Similarity=0.030 Sum_probs=60.8
Q ss_pred EEEEecCC----C-cEEEEeccCCcEEEEEEccCCCEEEEEec-CCcEEEEeCCCC------ee-eeeeeEEeeccccCC
Q 005646 419 VRIWAVLS----C-HVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDN------HL-ELDAEICVHSKKKAP 485 (686)
Q Consensus 419 V~iwd~~~----~-~~~~~~~~~~~V~~v~~spdg~~l~~gs~-dg~i~iwd~~~~------~~-~~~~~~~~~~~~~~~ 485 (686)
|.+.|.+. + ..+.++........+.++|||+++++++. +.++.++|+... ++ .....+. . ....
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~--a-e~e~ 376 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIV--G-EPEL 376 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEE--E-CCBC
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceE--e-eccC
Confidence 55555554 1 23344455556678999999999988765 788999998742 11 0100000 0 0112
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~ 518 (686)
.......+|.+ ++....+-.-|++|.-|++..
T Consensus 377 GlGPlHt~Fd~-~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 377 GLGPLHTTFDG-RGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSCEEEEEECS-SSEEEEEETTTTEEEEEEHHH
T ss_pred CCcccEEEECC-CCceEeeeeecceEEEEeccH
Confidence 34577889999 666666667999999998653
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.79 E-value=1.3 Score=44.03 Aligned_cols=102 Identities=7% Similarity=0.064 Sum_probs=59.2
Q ss_pred EEEEEECC------CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEc---------CCcEEEEecCCCcE
Q 005646 367 YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSI---------DGKVRIWAVLSCHV 429 (686)
Q Consensus 367 ~L~s~s~D------g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~---------Dg~V~iwd~~~~~~ 429 (686)
+++.|+.+ ..+.+||..+.+....-. ....-.+++. - ++.+++.|+. -..+.+||+.+.+-
T Consensus 104 iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-A-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-E-CCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 55556544 468899998886544322 1111122222 2 6677777764 34588999988764
Q ss_pred EEEeccCCc---EEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeee
Q 005646 430 VDWVDIRQI---VTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLEL 472 (686)
Q Consensus 430 ~~~~~~~~~---V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~ 472 (686)
........+ ...+.+ ++++++.|+.+ ..+.+||+.+++...
T Consensus 182 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 230 (306)
T 3ii7_A 182 TELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230 (306)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEE
T ss_pred EECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE
Confidence 443322211 222222 67777777654 458999998877543
No 316
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.57 E-value=1.9 Score=43.08 Aligned_cols=158 Identities=9% Similarity=0.029 Sum_probs=84.6
Q ss_pred EEEEECCCCeeeeEeeCCCCe--EEEEEeecCCCEEEEEEcC--------CcEEEEecCCCcEEEEeccCCc--EEEEEE
Q 005646 377 VRLWRVGNDHCLRVFPHSNYV--TCVHFNPVDDNYFISGSID--------GKVRIWAVLSCHVVDWVDIRQI--VTAVCY 444 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~h~~~V--~~v~fsp~~~~~l~sgs~D--------g~V~iwd~~~~~~~~~~~~~~~--V~~v~~ 444 (686)
+.+||..+.+....-....+- .+++.. ++.+++.|+.+ ..+.+||+.+.+-........+ -.+++
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~- 145 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL- 145 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-
Confidence 778888887653322211111 122221 56777777743 4588999988754332222211 11122
Q ss_pred ccCCCEEEEEec------CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCC-----cEEE
Q 005646 445 RPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS-----QVRI 513 (686)
Q Consensus 445 spdg~~l~~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~-----~I~i 513 (686)
.-+++.++.|+. -..+.+||+.+++......+ ......-. +... ++.+++.|+.++ .+.+
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM------QTARSLFG-ATVH--DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC------SSCCBSCE-EEEE--TTEEEEEEEECSSSEEEEEEE
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC------CCchhceE-EEEE--CCEEEEEeccCCCCccceEEE
Confidence 246677778776 24699999998876543211 11111112 2222 457778877654 4777
Q ss_pred EeCCcc----e-----------eEcCCCCEEEEEeCCC--------------cEEEEeCCCC
Q 005646 514 LQGPNV----I-----------GKYKDGKHIVSAGEDS--------------NVYMWNCIGH 546 (686)
Q Consensus 514 wd~~~~----~-----------~~~~dg~~l~sgs~Dg--------------~V~iWd~~~~ 546 (686)
||..+. + +..-+++.++.|+.++ .|.+||+.+.
T Consensus 217 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EECCCCeEEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 886542 1 1111667777777542 3667777654
No 317
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.46 Score=48.35 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=55.4
Q ss_pred ECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEee-c-------CCCEEEEEEcCCcEEEEecCCCcEEEEeccCCc
Q 005646 372 SIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNP-V-------DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (686)
Q Consensus 372 s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp-~-------~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~~~~ 438 (686)
+.||.|..++..+|.....+. ...++.. .=.| . .+..+++|+.+|++.-.|+.+|+.+.......+
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 578999999988886555444 2233332 1011 0 456889999999999999999999866654432
Q ss_pred EE------EEEEc-------cCCCEEEEEecCCcEEEEe
Q 005646 439 VT------AVCYR-------PDGQGGIVGSMMGDCRFYN 464 (686)
Q Consensus 439 V~------~v~~s-------pdg~~l~~gs~dg~i~iwd 464 (686)
.. ..|.. ..+..++.|..+..+.+.+
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 11 11111 1234666666666666655
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.45 E-value=4.6 Score=40.54 Aligned_cols=198 Identities=10% Similarity=0.161 Sum_probs=121.2
Q ss_pred EeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCC
Q 005646 258 FSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPP 337 (686)
Q Consensus 258 fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (686)
.+|..+.||--. ..++.|+|+++.+.+.....
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~----------------------------------------------- 105 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM----------------------------------------------- 105 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-----------------------------------------------
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceec-----------------------------------------------
Confidence 477777777665 57899999998875554432
Q ss_pred ccccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEECCC-CeeeeEee-C----CCCeEEEEEeecCCCEEE
Q 005646 338 KVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-H----SNYVTCVHFNPVDDNYFI 411 (686)
Q Consensus 338 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~-~~~~~~~~-h----~~~V~~v~fsp~~~~~l~ 411 (686)
..+|.-=.|-.+..|+-.+ +..|.-|++.. ..+.+.|. | ...|..-..++ +.++++
T Consensus 106 ----------------~e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~ 167 (365)
T 2xzh_A 106 ----------------TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLL 167 (365)
T ss_dssp ----------------SSCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEE
T ss_pred ----------------CCccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEEE
Confidence 2355666676666454444 46899999874 45666665 2 45677777777 777766
Q ss_pred EEEc-------CCcEEEEecCCCcEEEEeccCCcEEEEEEccCCC-----EEEEEec---CCcEEEEeCCCC---eeee-
Q 005646 412 SGSI-------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-----GGIVGSM---MGDCRFYNVSDN---HLEL- 472 (686)
Q Consensus 412 sgs~-------Dg~V~iwd~~~~~~~~~~~~~~~V~~v~~spdg~-----~l~~gs~---dg~i~iwd~~~~---~~~~- 472 (686)
..+. .|.+.+|..+.+......+|-..-. .+-.+|. .++.+.. .++++|-++... ...+
T Consensus 168 l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~--~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~ 245 (365)
T 2xzh_A 168 LTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA--QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 245 (365)
T ss_dssp EEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEE--EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC
T ss_pred EEeEeccCCccceeEEEEeecccccceeeeeeeeeE--EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc
Confidence 5543 4789999988776555555443322 2222222 3333322 258999988432 1111
Q ss_pred eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcC
Q 005646 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524 (686)
Q Consensus 473 ~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~ 524 (686)
.....+.-...+...-..+++.++ .-..+..-+.-|.|.+||..+..+.+.
T Consensus 246 kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 246 KKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp CEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEE
Confidence 122222222233455566788887 556778888888899999887655443
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.43 E-value=2.1 Score=42.33 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=74.6
Q ss_pred EEEEEECCC-----cEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC-------CcEEEEecCCCcEEEE
Q 005646 367 YLLSASIDK-----TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-------GKVRIWAVLSCHVVDW 432 (686)
Q Consensus 367 ~L~s~s~Dg-----~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D-------g~V~iwd~~~~~~~~~ 432 (686)
.++.|+.++ .+.+||+.+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...
T Consensus 111 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 188 (302)
T 2xn4_A 111 LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI 188 (302)
T ss_dssp EEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC
Confidence 555555443 57888988876544322 22111222222 66777777653 3588999988764433
Q ss_pred eccCC---cEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 433 VDIRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 433 ~~~~~---~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
..... ....+.+ ++++++.|+.+ ..+.+||+.+++......+. ...... ++... ++.+++.
T Consensus 189 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~------~~r~~~-~~~~~--~~~i~v~ 257 (302)
T 2xn4_A 189 AEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN------MCRRNA-GVCAV--NGLLYVV 257 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS------SCCBSC-EEEEE--TTEEEEE
T ss_pred CCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC------CccccC-eEEEE--CCEEEEE
Confidence 22221 1222222 67788888764 46999999888765432111 011111 12222 4567777
Q ss_pred EeCCC-----cEEEEeCC
Q 005646 505 SCADS-----QVRILQGP 517 (686)
Q Consensus 505 ~s~D~-----~I~iwd~~ 517 (686)
|+.++ .+.+||..
T Consensus 258 GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 258 GGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp CCBCSSSBCCCEEEEETT
T ss_pred CCcCCCcccccEEEEcCC
Confidence 77653 36666654
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.13 E-value=6.5 Score=41.07 Aligned_cols=201 Identities=11% Similarity=0.167 Sum_probs=121.0
Q ss_pred cceeeecCCCccceeeccceEEEEEcCCccccccccccCceecccCCceEEEEEeeCCCEEEEEeC-------CCcEEEE
Q 005646 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-------DGVVRLW 277 (686)
Q Consensus 205 ~~~~~s~~~~~l~~g~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-------Dg~I~vW 277 (686)
++.-+..-....+.-=.+..|.-|++........-......|. ...|..-..+++.++++..|- .|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY 184 (494)
T 1bpo_A 107 DVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (494)
T ss_dssp CCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEe
Confidence 4444444333333333466799999865333222222222333 356888888889988775542 2444455
Q ss_pred EeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCccccccCCCeEEeccCCCCe
Q 005646 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (686)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 357 (686)
.++.+ .-+.+.||.+.-
T Consensus 185 S~er~---------------------------------------------------------------~sQ~ieGhaa~F 201 (494)
T 1bpo_A 185 SVDRK---------------------------------------------------------------VSQPIEGHAASF 201 (494)
T ss_dssp ESTTC---------------------------------------------------------------CEEEECCSEEEE
T ss_pred ecccc---------------------------------------------------------------ccchheeeeeee
Confidence 44332 234455665544
Q ss_pred eEEEeeCCC----EEEEEEC---CCcEEEEECCCC---e------eeeE-ee---CCCCeEEEEEeecCCCEEEEEEcCC
Q 005646 358 LDLSWSKNN----YLLSASI---DKTVRLWRVGND---H------CLRV-FP---HSNYVTCVHFNPVDDNYFISGSIDG 417 (686)
Q Consensus 358 ~~l~~s~~~----~L~s~s~---Dg~V~iWd~~~~---~------~~~~-~~---h~~~V~~v~fsp~~~~~l~sgs~Dg 417 (686)
..+....+. .+..+.. .+.++|-++... . .+.. +. ..+...+++.++ ....++.-..-|
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G 280 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYG 280 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTS
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCc
Confidence 444332211 2333332 267888888543 1 1111 11 356778899999 888999999999
Q ss_pred cEEEEecCCCcEEEEecc-CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee
Q 005646 418 KVRIWAVLSCHVVDWVDI-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~~~~-~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~ 471 (686)
.|.+||+.++.++..... ...|...+.......++.-...|.|.--.++...+.
T Consensus 281 ~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 281 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred eEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 999999999999865554 455666666666667777778898888777766543
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.78 E-value=3.3 Score=41.12 Aligned_cols=158 Identities=11% Similarity=0.024 Sum_probs=86.1
Q ss_pred CcEEEEECCCCeeeeEee--CC-CCeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcEEEEeccC---CcEEEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP--HS-NYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVDIR---QIVTAVC 443 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~--h~-~~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~~~---~~V~~v~ 443 (686)
..+.+||+.+.+....-. .. ....++.+ ++.+++.|+.+ ..+.+||+.+.+-....... ....++.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 468889988876443322 11 11122222 66777777654 35888999887644332222 1122233
Q ss_pred EccCCCEEEEEecC-----CcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC-----CcEEE
Q 005646 444 YRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQVRI 513 (686)
Q Consensus 444 ~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D-----~~I~i 513 (686)
+ ++++++.|+.+ ..+.+||+.+++......+ .........+.+ ++.+++.|+.+ ..+.+
T Consensus 167 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~ 235 (308)
T 1zgk_A 167 L--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM------NTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVER 235 (308)
T ss_dssp E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC------SSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEE
T ss_pred E--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC------CCccccceEEEE---CCEEEEEeCCCCCCccceEEE
Confidence 3 67777777764 4589999988876543211 111111222222 45677777765 56888
Q ss_pred EeCCcce---------------eEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 005646 514 LQGPNVI---------------GKYKDGKHIVSAGED-----SNVYMWNCIGH 546 (686)
Q Consensus 514 wd~~~~~---------------~~~~dg~~l~sgs~D-----g~V~iWd~~~~ 546 (686)
||..+.. +..-++++++.|+.+ ..|.+||+.+.
T Consensus 236 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 236 YDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 8865420 111156666666643 34666666553
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.78 E-value=2.2 Score=45.44 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=22.7
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEeecC
Q 005646 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (686)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~ 282 (686)
-...+.|+|.|+|+++++--..+.|++++..++
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 345789999999997776544346777765433
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.69 E-value=4.2 Score=40.03 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=61.3
Q ss_pred EEEEEECC-----CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcEEEEec
Q 005646 367 YLLSASID-----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~ 434 (686)
+++.|+.+ ..+.+||+.+.+....-. ....-.+++. - ++.+++.|+.+ ..|.+||+.+.+-.....
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 239 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-L-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS 239 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-E-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC
Confidence 55555543 468899998876544322 2211112222 2 67788888765 468999998876544332
Q ss_pred cCC---cEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeeee
Q 005646 435 IRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELD 473 (686)
Q Consensus 435 ~~~---~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~ 473 (686)
... ...++.+ +++.++.|+.+ ..+.+||+.+++....
T Consensus 240 ~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 240 MTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred CCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 221 1222222 67788888765 4588999988876543
No 324
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.60 E-value=2.2 Score=43.64 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=61.9
Q ss_pred CCCeeEEEeeCCCEEEEEECCCcEEEEECCCCe-eeeEee----CCCCeEEEEEeecC---CCEEEEEEc----C----C
Q 005646 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-CLRVFP----HSNYVTCVHFNPVD---DNYFISGSI----D----G 417 (686)
Q Consensus 354 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~-~~~~~~----h~~~V~~v~fsp~~---~~~l~sgs~----D----g 417 (686)
-.....|+|.|+|.|+.+..++.|++++ ..++ .+..+. .......|+|+| + +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence 3456899999999777778889999997 3454 222211 235689999999 5 444444433 3 5
Q ss_pred cEEEEecCCC-------cEE-EEec--cCCcEEEEEEccCCCEEEEE
Q 005646 418 KVRIWAVLSC-------HVV-DWVD--IRQIVTAVCYRPDGQGGIVG 454 (686)
Q Consensus 418 ~V~iwd~~~~-------~~~-~~~~--~~~~V~~v~~spdg~~l~~g 454 (686)
.|..|+.... +.+ .-.. .......++|.|||.++++-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 6777777654 111 1111 11124679999999766653
No 325
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.42 E-value=2.5 Score=43.27 Aligned_cols=105 Identities=11% Similarity=0.123 Sum_probs=62.2
Q ss_pred CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec------cCCcEEEEEEccC---CCEEEEEec-C-----Cc
Q 005646 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD------IRQIVTAVCYRPD---GQGGIVGSM-M-----GD 459 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~------~~~~V~~v~~spd---g~~l~~gs~-d-----g~ 459 (686)
.....|+|.| +++++++ ..+|.|++++ ++....... .......|+++|+ +..|+++.. . +.
T Consensus 31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 4568999999 8885554 5679999998 444322211 2346889999998 555555543 2 67
Q ss_pred EEEEeCCCCeeeeeeeEEeeccc--cCCCCCeEEEEEeCCCCCeEEEE
Q 005646 460 CRFYNVSDNHLELDAEICVHSKK--KAPCKRITGFQFLPQDSSKVMVS 505 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~I~~l~fsp~~~~~l~~~ 505 (686)
|..|+.....+... +..+.... .........++|.| ++.++++.
T Consensus 107 v~r~~~~~~~~~~~-~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLD-RVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEE-EEEEEEECCCTTCCCCCCCEEECT-TSCEEEEC
T ss_pred EEEEEeCCCCcCce-EEEEEeCCCCCCCCcCCceEEECC-CCCEEEEE
Confidence 88888875432211 11111111 11122346899999 66655554
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.30 E-value=3.9 Score=40.77 Aligned_cols=130 Identities=13% Similarity=0.105 Sum_probs=69.8
Q ss_pred EEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC-------CcEEEEecCCCcEEEEeccCCcE--EEEEEc
Q 005646 377 VRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-------GKVRIWAVLSCHVVDWVDIRQIV--TAVCYR 445 (686)
Q Consensus 377 V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D-------g~V~iwd~~~~~~~~~~~~~~~V--~~v~~s 445 (686)
+.+||..+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-........+. .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS- 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence 7788888776543322 11111222222 67788888864 34888898887644433322221 11222
Q ss_pred cCCCEEEEEec------CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC-----CcEEEE
Q 005646 446 PDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQVRIL 514 (686)
Q Consensus 446 pdg~~l~~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D-----~~I~iw 514 (686)
.+++.++.|+. -..+.+||+.+++......+ ...... .++... ++.+++.|+.+ ..+.+|
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM------KTPRSM-FGVAIH--KGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC------SSCCBS-CEEEEE--TTEEEEEEEEETTEEEEEEEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC------CCCccc-ceEEEE--CCEEEEEcCcCCCCccceEEEE
Confidence 46777777764 24599999998876543211 111111 122222 45777777654 346677
Q ss_pred eCCc
Q 005646 515 QGPN 518 (686)
Q Consensus 515 d~~~ 518 (686)
|..+
T Consensus 228 d~~~ 231 (318)
T 2woz_A 228 DLKT 231 (318)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 7653
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.12 E-value=0.1 Score=49.26 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=64.5
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCCCeee------eEeeC--CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCL------RVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~------~~~~h--~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~ 427 (686)
.+.+++|+|++.|... .++.+.-.+..+.... ..+.. -..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 6779999998866665 6776666555442211 12211 01147899998 8887777 5799988887543
Q ss_pred cEEEEec--------cCCcEEEEEEccCCCEEEEEecCCcEE
Q 005646 428 HVVDWVD--------IRQIVTAVCYRPDGQGGIVGSMMGDCR 461 (686)
Q Consensus 428 ~~~~~~~--------~~~~V~~v~~spdg~~l~~gs~dg~i~ 461 (686)
..-.|.. .-..+..|.+.|+|.+.++. ||.++
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 2222211 11357999999999888777 77754
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.82 E-value=4.3 Score=41.32 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=26.2
Q ss_pred cCCceEEEEEeeCCCEEEEEeCCCcEEEEEeecCe
Q 005646 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (686)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~ 283 (686)
.-..-+.|+|.|||.++++--..|.|++++..+++
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~ 64 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR 64 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence 34567899999999977776548889888754443
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.78 E-value=11 Score=39.46 Aligned_cols=166 Identities=10% Similarity=0.101 Sum_probs=99.9
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCC-CeeeeEee-C----CCCeEEEEEeecCCCEEEEEEc-------CCcEEEE
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-H----SNYVTCVHFNPVDDNYFISGSI-------DGKVRIW 422 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~-~~~~~~~~-h----~~~V~~v~fsp~~~~~l~sgs~-------Dg~V~iw 422 (686)
+|.-=.|-.+..|+..+ +..|.-|++.. ..+.+.|. | ...|..-..++ +.++++..+. .|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLY 184 (494)
T 1bpo_A 107 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLY 184 (494)
T ss_dssp CCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEe
Confidence 45555665555444443 56899999864 45666665 2 45677777777 7777665543 4789999
Q ss_pred ecCCCcEEEEeccCCcEEEEEEccC---CCEEEEEec---CCcEEEEeCCCC---eeee-eeeEEeeccccCCCCCeEEE
Q 005646 423 AVLSCHVVDWVDIRQIVTAVCYRPD---GQGGIVGSM---MGDCRFYNVSDN---HLEL-DAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 423 d~~~~~~~~~~~~~~~V~~v~~spd---g~~l~~gs~---dg~i~iwd~~~~---~~~~-~~~~~~~~~~~~~~~~I~~l 492 (686)
....+......+|-..-..+.+.-+ .+.++.+.. .++++|-++... ...+ .....+.-.......-..++
T Consensus 185 S~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam 264 (494)
T 1bpo_A 185 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (494)
T ss_dssp ESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred eccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence 9987766555555443322222111 123333433 278999998532 1111 12222222223445556788
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEeCCcceeEcC
Q 005646 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524 (686)
Q Consensus 493 ~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~ 524 (686)
+.++ .-..+..-+.-|.|.+||..+..+.+.
T Consensus 265 qvs~-kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 265 QISE-KHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp EEET-TTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred Eecc-cCCEEEEEecCceEEEEecccceeeee
Confidence 8888 667888888999999999988755443
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.51 E-value=10 Score=38.55 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=35.2
Q ss_pred CcEEEEEEcc-------CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEE
Q 005646 437 QIVTAVCYRP-------DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (686)
Q Consensus 437 ~~V~~v~~sp-------dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~ 503 (686)
..+..++|.. +|+++++.-..+.|...++..++...... +. .....++.++++.| ++.+++
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~--~~---~~~~~rp~~v~~~p-dG~lyv 338 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR--IL---TDRGQRIRDVRTGP-DGYLYV 338 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--ES---GGGCCCEEEEEECT-TSCEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE--cc---cCCCCceeEEEECC-CCcEEE
Confidence 4566777753 56677766667778888877554322111 11 11235688899888 444333
No 331
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=92.43 E-value=6 Score=39.01 Aligned_cols=95 Identities=11% Similarity=0.147 Sum_probs=57.0
Q ss_pred CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcEEEEeccC---CcEEEEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVDIR---QIVTAVCY 444 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~~~---~~V~~v~~ 444 (686)
..+.+||+.+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-....... ....++.+
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 246 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence 458899998886543322 22111222222 56778887754 35889999887644332221 12223333
Q ss_pred ccCCCEEEEEecC-----CcEEEEeCCCCeeeee
Q 005646 445 RPDGQGGIVGSMM-----GDCRFYNVSDNHLELD 473 (686)
Q Consensus 445 spdg~~l~~gs~d-----g~i~iwd~~~~~~~~~ 473 (686)
++++++.|+.+ ..+.+||+.+++....
T Consensus 247 --~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp --TTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred --CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 77788888754 5689999998876653
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.15 E-value=8.8 Score=38.04 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=55.9
Q ss_pred CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEc-C-----CcEEEEecCCCcEEEEeccCC---cEEEEE
Q 005646 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSI-D-----GKVRIWAVLSCHVVDWVDIRQ---IVTAVC 443 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~-D-----g~V~iwd~~~~~~~~~~~~~~---~V~~v~ 443 (686)
..+.+||..+.+....-. ....-.+++. - ++.+++.|+. + ..+.+||+.+.+-........ ...++.
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 194 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLS-H-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV 194 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCcEeECCCCCCcccceeEEE-E-CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE
Confidence 458899998876433222 2211122222 2 6778888876 2 468999998875443322221 122222
Q ss_pred EccCCCEEEEEecCC-----cEEEEeCCCCeeee
Q 005646 444 YRPDGQGGIVGSMMG-----DCRFYNVSDNHLEL 472 (686)
Q Consensus 444 ~spdg~~l~~gs~dg-----~i~iwd~~~~~~~~ 472 (686)
+ +++.++.|+.++ .+.+||+.+++...
T Consensus 195 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 195 H--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp E--TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred E--CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 2 677888887655 48899998887654
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=89.28 E-value=10 Score=37.43 Aligned_cols=102 Identities=9% Similarity=0.091 Sum_probs=59.4
Q ss_pred EEEEEECC-----CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcC-----CcEEEEecCCCcEEEEec
Q 005646 367 YLLSASID-----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 367 ~L~s~s~D-----g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~ 434 (686)
+++.|+.+ ..+.+||+.+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.....
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 55555543 458899988876543322 11111222222 67788888765 468999998876443322
Q ss_pred cCC---cEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeee
Q 005646 435 IRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLEL 472 (686)
Q Consensus 435 ~~~---~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~ 472 (686)
... ....+. -+++.++.|+.+ ..+.+||+.+++...
T Consensus 249 ~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 249 MKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp CSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred CCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 221 122222 267788887754 458899998877653
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=89.21 E-value=18 Score=35.68 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=57.3
Q ss_pred EEEEEECC-------CcEEEEECCCCeeeeEeeCCCC--eEEEEEeecCCCEEEEEEcC------CcEEEEecCCCcEEE
Q 005646 367 YLLSASID-------KTVRLWRVGNDHCLRVFPHSNY--VTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVD 431 (686)
Q Consensus 367 ~L~s~s~D-------g~V~iWd~~~~~~~~~~~h~~~--V~~v~fsp~~~~~l~sgs~D------g~V~iwd~~~~~~~~ 431 (686)
.++.|+.+ ..+.+||..+.+....-....+ -.+++. . ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 112 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~ 189 (318)
T 2woz_A 112 IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD 189 (318)
T ss_dssp EEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTEEEE
T ss_pred EEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCEEEE
Confidence 55555543 3478889888765443221111 112222 2 67777777642 358999998876443
Q ss_pred EeccCC---cEEEEEEccCCCEEEEEecC-----CcEEEEeCCCCeeee
Q 005646 432 WVDIRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLEL 472 (686)
Q Consensus 432 ~~~~~~---~V~~v~~spdg~~l~~gs~d-----g~i~iwd~~~~~~~~ 472 (686)
...... ...++. -+++.++.|+.+ ..+.+||+.+++...
T Consensus 190 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 190 LAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred CCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence 322221 122222 267777887654 347789988876543
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=88.95 E-value=4.5 Score=41.15 Aligned_cols=112 Identities=8% Similarity=-0.066 Sum_probs=63.8
Q ss_pred CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-------ccCCcEEEEEEccC---CCEEEEE---ecCCc
Q 005646 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-------DIRQIVTAVCYRPD---GQGGIVG---SMMGD 459 (686)
Q Consensus 393 h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-------~~~~~V~~v~~spd---g~~l~~g---s~dg~ 459 (686)
.-...+.|+|.| ++.+|++--..|+|++++..+++..... ........|+++|+ +..|.+. ..++.
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 345678999999 8887777655899999987666543221 12456889999995 3445443 23455
Q ss_pred EEEEeCCCCe----eeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEe
Q 005646 460 CRFYNVSDNH----LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (686)
Q Consensus 460 i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s 506 (686)
|.-|.+.... .....+..+..........-..|.|.| ++.++++.+
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G 158 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG 158 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence 6666665421 111111111111111122345688988 555555543
No 336
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=88.43 E-value=37 Score=38.28 Aligned_cols=146 Identities=8% Similarity=0.127 Sum_probs=87.5
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeEee-----CCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEE
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~ 430 (686)
.|.++.. .++.|..++.+ -|..+|..+++...... ....|.++...+ ++.+.+ |+.+ -|..++..+++..
T Consensus 104 ~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~ 178 (758)
T 3ott_A 104 DVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFE 178 (758)
T ss_dssp CEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEE
T ss_pred eEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceE
Confidence 4555544 35666667766 67888987765432211 245688888766 565554 5544 5778888777654
Q ss_pred EEecc------CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCCeEEE
Q 005646 431 DWVDI------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (686)
Q Consensus 431 ~~~~~------~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~ 504 (686)
..... ...|.++...+++..|.+|+. +-+..||..+++......+ . ...|.++...+ + ..|.+
T Consensus 179 ~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l--~------~~~i~~i~~d~-~-g~lWi 247 (758)
T 3ott_A 179 GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF--H------NNSIKSLALDG-N-GDLLA 247 (758)
T ss_dssp EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE--E------EEEEEEEEECT-T-CCEEE
T ss_pred EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC--C------CCeEEEEEEcC-C-CCEEE
Confidence 32211 124888888887776666764 4688899877664322111 1 12377776655 3 34555
Q ss_pred EeCCCcEEEEeCCc
Q 005646 505 SCADSQVRILQGPN 518 (686)
Q Consensus 505 ~s~D~~I~iwd~~~ 518 (686)
++. +-+.+++..+
T Consensus 248 gT~-~Gl~~~~~~~ 260 (758)
T 3ott_A 248 GTD-NGLYVYHNDT 260 (758)
T ss_dssp EET-TEEEEECCTT
T ss_pred EeC-CceeEEecCC
Confidence 554 4677887654
No 337
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=88.24 E-value=4.4 Score=43.01 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=39.7
Q ss_pred CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec---------cCCcEEEEEEccC---CCEEEEEe
Q 005646 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---------IRQIVTAVCYRPD---GQGGIVGS 455 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---------~~~~V~~v~~spd---g~~l~~gs 455 (686)
...+.|+|.| +++++++-...+.|++++..++....... ....+..|+|+|+ +..|.+..
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 4668999999 88877765444579888876555432221 2345779999995 55555544
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=87.76 E-value=25 Score=39.45 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=62.5
Q ss_pred CC-EEEEEECC------CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEEcCC--cEEEEecCCCcEEEEe
Q 005646 365 NN-YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG--KVRIWAVLSCHVVDWV 433 (686)
Q Consensus 365 ~~-~L~s~s~D------g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg--~V~iwd~~~~~~~~~~ 433 (686)
++ .++.|+.+ ..+.+||..+.+....-. ....-.+++... ++.+++.|+.++ .+.+||+.+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 45 55555543 357889988876543322 222222333323 788888888765 6999999887644322
Q ss_pred c------cCCcEEEEEEccC-CCEEEEEec--C-----CcEEEEeCCCCe
Q 005646 434 D------IRQIVTAVCYRPD-GQGGIVGSM--M-----GDCRFYNVSDNH 469 (686)
Q Consensus 434 ~------~~~~V~~v~~spd-g~~l~~gs~--d-----g~i~iwd~~~~~ 469 (686)
. ......++.+..+ ++.++.|+. + +.+.+||+.++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1 1222334566655 777777766 2 458899998876
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=87.74 E-value=13 Score=37.58 Aligned_cols=94 Identities=5% Similarity=0.044 Sum_probs=52.1
Q ss_pred CcEEEEECCCCeeeeEeeC---CCCeEEEEEeecCCCEEEEEEcC-----------------------------------
Q 005646 375 KTVRLWRVGNDHCLRVFPH---SNYVTCVHFNPVDDNYFISGSID----------------------------------- 416 (686)
Q Consensus 375 g~V~iWd~~~~~~~~~~~h---~~~V~~v~fsp~~~~~l~sgs~D----------------------------------- 416 (686)
..+.+||+.+.+....-.. ...-.+++. . ++.+++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 4688999988765433221 111112222 3 77888888865
Q ss_pred ----CcEEEEecCCCcEEEEeccCC--cE-EEEEEccCCCEEEEEec------CCcEEEEeC--CCCeee
Q 005646 417 ----GKVRIWAVLSCHVVDWVDIRQ--IV-TAVCYRPDGQGGIVGSM------MGDCRFYNV--SDNHLE 471 (686)
Q Consensus 417 ----g~V~iwd~~~~~~~~~~~~~~--~V-~~v~~spdg~~l~~gs~------dg~i~iwd~--~~~~~~ 471 (686)
..+.+||+.+.+-........ .- .+++. -++++++.|+. ...+.+||+ .+....
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~ 232 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN 232 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence 478999998876443332221 11 22222 26667777764 345778887 554443
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=87.10 E-value=33 Score=41.53 Aligned_cols=166 Identities=10% Similarity=0.104 Sum_probs=88.3
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCC-CeeeeEee-C----CCCeEEEEEeecCCCEEEEEE-------cCCcEEEE
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-H----SNYVTCVHFNPVDDNYFISGS-------IDGKVRIW 422 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~-~~~~~~~~-h----~~~V~~v~fsp~~~~~l~sgs-------~Dg~V~iw 422 (686)
+|.-=.|-....|+..+ +..|.-|++.. ..+.+.|. | ...|..-..++ +.++++..+ ..|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 107 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred CceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeee
Confidence 45555665555444433 46799999963 34555554 3 45676677777 677666544 35889999
Q ss_pred ecCCCcEEEEeccCCcEEEEEEc--c-CCCEEEEEec---CCcEEEEeCCCC---eeee-eeeEEeeccccCCCCCeEEE
Q 005646 423 AVLSCHVVDWVDIRQIVTAVCYR--P-DGQGGIVGSM---MGDCRFYNVSDN---HLEL-DAEICVHSKKKAPCKRITGF 492 (686)
Q Consensus 423 d~~~~~~~~~~~~~~~V~~v~~s--p-dg~~l~~gs~---dg~i~iwd~~~~---~~~~-~~~~~~~~~~~~~~~~I~~l 492 (686)
....+......+|-.....+... + ..+.++.+.. .+.++|-++... ...+ .....+.-.......-..++
T Consensus 185 S~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~ 264 (1630)
T 1xi4_A 185 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (1630)
T ss_pred ecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence 88776543333333222111111 1 1112222211 268888888543 1111 11111111111223334556
Q ss_pred EEeCCCCCeEEEEeCCCcEEEEeCCcceeEcC
Q 005646 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524 (686)
Q Consensus 493 ~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~ 524 (686)
+.++ .-..+...+.-|.|.++|..+..+.+.
T Consensus 265 ~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 265 QISE-KHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred Eecc-ccCEEEEEecCceEEEEecccchhhhh
Confidence 6666 456677777788888888877655443
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.36 E-value=17 Score=43.91 Aligned_cols=76 Identities=8% Similarity=0.104 Sum_probs=53.2
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc-CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCee
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~ 470 (686)
.+...+++.++ ....++.-+.-|.|.+||+.++.++..... ...|...+.......++.-...|.|.--.+....+
T Consensus 258 ~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 258 NDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred cCcceEEEecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 45567788888 777888889999999999999988754443 34454445554444555556778777766665544
No 342
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=85.60 E-value=31 Score=34.51 Aligned_cols=111 Identities=11% Similarity=0.024 Sum_probs=66.6
Q ss_pred CeeEEEeeCC-CEEEEEECCCcEEEEECC--C---------CeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEe
Q 005646 356 EILDLSWSKN-NYLLSASIDKTVRLWRVG--N---------DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (686)
Q Consensus 356 ~V~~l~~s~~-~~L~s~s~Dg~V~iWd~~--~---------~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd 423 (686)
.+..+..... ..|+..+..|.+..+.+. . |.....+.....|.++...+ .+.+++..+..|.++.-.
T Consensus 147 ~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 147 ELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEE
T ss_pred EEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEE
Confidence 3333333333 377777788887777665 2 11222233567788877766 667899999999998887
Q ss_pred cCCCc-------EE---EEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 424 VLSCH-------VV---DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 424 ~~~~~-------~~---~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
+..-. -+ .+......+-.+....+...++..+.+|.+.-++...
T Consensus 226 l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 226 IEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp GGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred HHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 64321 11 1112123444444444455677778888888887654
No 343
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=85.56 E-value=0.51 Score=30.83 Aligned_cols=20 Identities=50% Similarity=0.619 Sum_probs=16.3
Q ss_pred CCCCCcccccccccccccCC
Q 005646 4 SSEDEECPFFDASEDIASIS 23 (686)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (686)
|+|+||-.||||.+-|....
T Consensus 13 SdEDed~EfFDA~efITv~~ 32 (47)
T 2rr3_B 13 SDEDDENEFFDAPEIITMPE 32 (47)
T ss_dssp CCCCCSSCCBCCCSSCSSCS
T ss_pred cccccccccccccceeEccC
Confidence 67888899999999777654
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=85.45 E-value=30 Score=34.20 Aligned_cols=99 Identities=6% Similarity=-0.023 Sum_probs=56.4
Q ss_pred EeeCCC-EEE-EEECCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEcC--CcEEEEecCCCcEEEEeccC
Q 005646 361 SWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID--GKVRIWAVLSCHVVDWVDIR 436 (686)
Q Consensus 361 ~~s~~~-~L~-s~s~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~D--g~V~iwd~~~~~~~~~~~~~ 436 (686)
++++++ .|+ +......|.+-++..+.....+.. ... ..++| ++.+|+-.... ..|..-++.......+..
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~-- 224 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--NCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPNPVVLTE-- 224 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--CEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCCCEECSC--
T ss_pred EeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--Ccc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCCeEEEeC--
Confidence 345666 444 433467888888877665544432 222 34668 67777665544 356666666555433332
Q ss_pred CcEEEEEEccCCCEEEEEec--CCcEEEEeCCC
Q 005646 437 QIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSD 467 (686)
Q Consensus 437 ~~V~~v~~spdg~~l~~gs~--dg~i~iwd~~~ 467 (686)
..+ ..|+|++++|..++. .+.|..-++..
T Consensus 225 ~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 225 ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 223 348888888876533 34555556554
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=85.33 E-value=0.92 Score=46.13 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=70.6
Q ss_pred CCEEEEEECCCcEEEEECCCCeeeeEeeCC--CCeEEEEEeec-CCCEEEEE--EcCCcEEEEecCCCcEEEEeccCCcE
Q 005646 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHS--NYVTCVHFNPV-DDNYFISG--SIDGKVRIWAVLSCHVVDWVDIRQIV 439 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~~~~~~~~~h~--~~V~~v~fsp~-~~~~l~sg--s~Dg~V~iwd~~~~~~~~~~~~~~~V 439 (686)
+++++.++.||.|.-.|..+|+.+..+... .++....-... .+..++.+ +.||.|..++..++...........+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 348899999999999999999999998743 23322111100 12234433 58999999999888544222221111
Q ss_pred E--EEEEc-----------cCCCEEEEEecCCcEEEEeCCCCeeeee
Q 005646 440 T--AVCYR-----------PDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (686)
Q Consensus 440 ~--~v~~s-----------pdg~~l~~gs~dg~i~iwd~~~~~~~~~ 473 (686)
. -+... ..+..+++|+.+|++...|+.+++....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 0 01111 1455788999999999999999987654
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.03 E-value=24 Score=39.51 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=63.1
Q ss_pred CC-EEEEEECCC--cEEEEECCCCeeeeEe-----e-CCCCeEEEEEeecCCCEEEEEEc--C-----CcEEEEecCCCc
Q 005646 365 NN-YLLSASIDK--TVRLWRVGNDHCLRVF-----P-HSNYVTCVHFNPVDDNYFISGSI--D-----GKVRIWAVLSCH 428 (686)
Q Consensus 365 ~~-~L~s~s~Dg--~V~iWd~~~~~~~~~~-----~-h~~~V~~v~fsp~~~~~l~sgs~--D-----g~V~iwd~~~~~ 428 (686)
++ +++.|+.++ .+.+||..+.+....- . ......++.+...++.+++.|+. + ..+.+||+.+..
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 44 666666544 7999999887654332 1 11222335555522667888876 2 458899998877
Q ss_pred ------EEEEec---cCCcEEEEEEccCCCEEEEEec--------CCcEEEEeCCCCeee
Q 005646 429 ------VVDWVD---IRQIVTAVCYRPDGQGGIVGSM--------MGDCRFYNVSDNHLE 471 (686)
Q Consensus 429 ------~~~~~~---~~~~V~~v~~spdg~~l~~gs~--------dg~i~iwd~~~~~~~ 471 (686)
-..... ....-.+++...++++++.|+. ...+.+||+.++...
T Consensus 580 w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 580 ATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp SSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred cccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 222211 1111122333344778888874 346999999988765
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=84.85 E-value=21 Score=35.86 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=28.4
Q ss_pred cEEEEecCCCcEEEEeccCCc-EEEEEEccCCCEEEEEecCC------cEEEEeCCCCeeee
Q 005646 418 KVRIWAVLSCHVVDWVDIRQI-VTAVCYRPDGQGGIVGSMMG------DCRFYNVSDNHLEL 472 (686)
Q Consensus 418 ~V~iwd~~~~~~~~~~~~~~~-V~~v~~spdg~~l~~gs~dg------~i~iwd~~~~~~~~ 472 (686)
.+.+||+.+.+-........+ ....+..-++++++.|+.++ .|.++++++++...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 477899887653332222211 11122334778888888653 36667888776554
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=84.11 E-value=35 Score=33.72 Aligned_cols=101 Identities=13% Similarity=0.069 Sum_probs=56.6
Q ss_pred EeeCCC-EEEEEE----CCCcEEEEECCCCeeeeEeeCCCCeEEEEEeecCCCEEEEEEc-CCcEEEEecCCCcEEEEec
Q 005646 361 SWSKNN-YLLSAS----IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCHVVDWVD 434 (686)
Q Consensus 361 ~~s~~~-~L~s~s----~Dg~V~iWd~~~~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~-Dg~V~iwd~~~~~~~~~~~ 434 (686)
.|++++ .|+-.. ....|..-++......+...+.. .+|+| +++.|+-.+. ..+|..-++..+....+..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 556666 555444 33445555565433333333432 45677 6666665444 5778888887766544433
Q ss_pred cCCcEEEEEEccCCCEEEEEecCC--cEEEEeCCCCe
Q 005646 435 IRQIVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNH 469 (686)
Q Consensus 435 ~~~~V~~v~~spdg~~l~~gs~dg--~i~iwd~~~~~ 469 (686)
.... ..+.|++.+|+-....+ .|..-++....
T Consensus 185 --~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 185 --CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp --SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred --CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 2222 34669999888766543 45555555443
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.49 E-value=28 Score=40.69 Aligned_cols=41 Identities=12% Similarity=0.243 Sum_probs=35.2
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeeccC
Q 005646 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (686)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~ 291 (686)
..|.+++..++..+|+|-+.|+++|||++.+++++......
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 36788888888899999999999999999999988776543
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=74.61 E-value=51 Score=33.63 Aligned_cols=147 Identities=10% Similarity=-0.018 Sum_probs=73.8
Q ss_pred CCEEEEEECCCcEEEEECCC-CeeeeE---eeCCCCeEEEEEeecCCCEEEEEEcCC----cEEEEecCCCcEEEEec--
Q 005646 365 NNYLLSASIDKTVRLWRVGN-DHCLRV---FPHSNYVTCVHFNPVDDNYFISGSIDG----KVRIWAVLSCHVVDWVD-- 434 (686)
Q Consensus 365 ~~~L~s~s~Dg~V~iWd~~~-~~~~~~---~~h~~~V~~v~fsp~~~~~l~sgs~Dg----~V~iwd~~~~~~~~~~~-- 434 (686)
.+.|+.++..| +.+++... +..-.. ......|.+|++.|.+...|..+...| .|...+ ..++.-....
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 34777788776 44444332 222211 123467999999986566666666665 444332 2222111111
Q ss_pred -------------cCCcEEEEEEcc-C-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeecc----------ccCCCCCe
Q 005646 435 -------------IRQIVTAVCYRP-D-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----------KKAPCKRI 489 (686)
Q Consensus 435 -------------~~~~V~~v~~sp-d-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~~~I 489 (686)
....|.++++.| + ...+.+++..+.|...+-................ .......|
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 112477899987 2 4566666666666555433322221100000000 00122457
Q ss_pred EEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 490 TGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 490 ~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
..|.+.|.+...|.++..++.|..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~ 203 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFE 203 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEE
Confidence 889998865566666655544443
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=74.21 E-value=79 Score=32.09 Aligned_cols=109 Identities=9% Similarity=-0.075 Sum_probs=56.3
Q ss_pred CCeeEEEeeC--CCEEEEEECCC----cEEEEECCCCeeeeEee---------------CCCCeEEEEEeecC-CCEEEE
Q 005646 355 GEILDLSWSK--NNYLLSASIDK----TVRLWRVGNDHCLRVFP---------------HSNYVTCVHFNPVD-DNYFIS 412 (686)
Q Consensus 355 ~~V~~l~~s~--~~~L~s~s~Dg----~V~iWd~~~~~~~~~~~---------------h~~~V~~v~fsp~~-~~~l~s 412 (686)
..|.+|++.| .+.|..++..+ .|...+ ..++.-..+. ....|.+|++.|.+ .+.++.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4688999988 45555555444 343332 2222211111 11257889998754 566777
Q ss_pred EEcCCcEEEEecCCCcEEEEec-------------------cCCcEEEEEEccC-CCEEEEEecCCcEEEEe
Q 005646 413 GSIDGKVRIWAVLSCHVVDWVD-------------------IRQIVTAVCYRPD-GQGGIVGSMMGDCRFYN 464 (686)
Q Consensus 413 gs~Dg~V~iwd~~~~~~~~~~~-------------------~~~~V~~v~~spd-g~~l~~gs~dg~i~iwd 464 (686)
+...+.|...+=....-..... ....+.+|.++|. ...++++..++.|...+
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~ 205 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST 205 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC
Confidence 6666655544221111111110 1235788999983 45566665555555443
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.82 E-value=1.5e+02 Score=34.53 Aligned_cols=37 Identities=14% Similarity=0.400 Sum_probs=32.2
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP 392 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~ 392 (686)
.+.+++..++. ++++-+.|+++|+|++.+++|+.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777777776 99999999999999999999998765
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=71.78 E-value=11 Score=40.73 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=70.8
Q ss_pred eeEEEeeCCC-EEE-EEECCCcEEEEECCCC------ee-------eeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEE
Q 005646 357 ILDLSWSKNN-YLL-SASIDKTVRLWRVGND------HC-------LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421 (686)
Q Consensus 357 V~~l~~s~~~-~L~-s~s~Dg~V~iWd~~~~------~~-------~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~i 421 (686)
...+..+|+| +++ ++-.+.+|.++|+..- +. .....-.-.....+|.+ +++...|.-.|..|..
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceEEE
Confidence 3467789999 444 5556899999998742 11 22222455678899999 8877777779999999
Q ss_pred EecCCC----------cEEEEeccCCcEEEEEE------ccCCCEEEEEec
Q 005646 422 WAVLSC----------HVVDWVDIRQIVTAVCY------RPDGQGGIVGSM 456 (686)
Q Consensus 422 wd~~~~----------~~~~~~~~~~~V~~v~~------spdg~~l~~gs~ 456 (686)
|++... .++...+....+-.+.- .|||++|++...
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 999753 46666676666666665 579999998743
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.47 E-value=90 Score=31.11 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=68.3
Q ss_pred EEEEEECCCcEEEEECCCC-------eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC--CCcE-------E
Q 005646 367 YLLSASIDKTVRLWRVGND-------HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL--SCHV-------V 430 (686)
Q Consensus 367 ~L~s~s~Dg~V~iWd~~~~-------~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~--~~~~-------~ 430 (686)
+++..+.+|.|+.-.+... .....+...+.+..+.... ....++..+..|.+..+... .-.. +
T Consensus 111 ~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv 189 (327)
T 3uc1_A 111 YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATSGV 189 (327)
T ss_dssp EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE
T ss_pred EEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCCCe
Confidence 9999999999999876532 2222333566777776665 66778888999998888766 2111 1
Q ss_pred EE--eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 431 DW--VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 431 ~~--~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
.. ......|.++...+++..++..+..|.++.-.+..
T Consensus 190 ~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 190 QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 11 12345577766666677899999999998887654
No 355
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=70.16 E-value=1.4e+02 Score=33.33 Aligned_cols=150 Identities=8% Similarity=0.001 Sum_probs=89.9
Q ss_pred CCeeEEEeeCCCEEEEEECCCcEEEEECCC------Ceee--eEee-----CCCCeEEEEEeecCCCEEEEEEcCCcEEE
Q 005646 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGN------DHCL--RVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRI 421 (686)
Q Consensus 355 ~~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~------~~~~--~~~~-----h~~~V~~v~fsp~~~~~l~sgs~Dg~V~i 421 (686)
..|.++.-.+++.|..|+..+-|.++|..+ .... ..+. ....|.+|...+ ++++.+.++..+-|..
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence 457788877778888888877788888643 1111 1221 234689998887 7777764444556888
Q ss_pred EecCCCcEEEEecc----CCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCC
Q 005646 422 WAVLSCHVVDWVDI----RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (686)
Q Consensus 422 wd~~~~~~~~~~~~----~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~ 497 (686)
+|..+++....... ...+.++....+|.+.+ |+.. -+..||..+.+...... ..-....|.++...
T Consensus 498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~------~gl~~~~i~~i~~~-- 567 (758)
T 3ott_A 498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHG-GVMRINPKDESQQSISF------GSFSNNEILSMTCV-- 567 (758)
T ss_dssp EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETT-EEEEECC--CCCCBCCC------CC---CCEEEEEEE--
T ss_pred EeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecC-ceEEEecCCCceEEecc------cCCCccceEEEEEC--
Confidence 99988876654321 24578888888887665 4554 48888876654332110 01122457777652
Q ss_pred CCCeEEEEeCCCcEEEEeCC
Q 005646 498 DSSKVMVSCADSQVRILQGP 517 (686)
Q Consensus 498 ~~~~l~~~s~D~~I~iwd~~ 517 (686)
+ ..|.+++..| |..+|..
T Consensus 568 ~-g~lWi~t~~G-l~~~~~~ 585 (758)
T 3ott_A 568 K-NSIWVSTTNG-LWIIDRK 585 (758)
T ss_dssp T-TEEEEEESSC-EEEEETT
T ss_pred C-CCEEEECCCC-eEEEcCC
Confidence 3 3555555554 5556654
No 356
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=58.41 E-value=1.2e+02 Score=34.51 Aligned_cols=156 Identities=10% Similarity=0.076 Sum_probs=81.1
Q ss_pred CCCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeC-------CCCeEEEEEeecCCCEEEEEEcCCc----EE
Q 005646 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPH-------SNYVTCVHFNPVDDNYFISGSIDGK----VR 420 (686)
Q Consensus 354 ~~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h-------~~~V~~v~fsp~~~~~l~sgs~Dg~----V~ 420 (686)
.+.|.+|+++|.. .++.+...+.|...+=....-.....+ ...|.+|+++|.+.+.++.+..+.. -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 4689999999964 777777777776665332222222211 2469999999855566666553321 33
Q ss_pred EEecC-CCcEEEEecc----------CCcEEEEEEccC-CCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCC
Q 005646 421 IWAVL-SCHVVDWVDI----------RQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (686)
Q Consensus 421 iwd~~-~~~~~~~~~~----------~~~V~~v~~spd-g~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 488 (686)
||-.. .++.-..... ...+..++++|. ...++++...+. ||...++-..... +............
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~-~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTN-VTSIPDAFTNGIG 170 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEE-ETTSCCCCSTTTC
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCC-CccCccccCCCCC
Confidence 44333 3332222111 113556888874 446666654443 3433322111110 0000000011245
Q ss_pred eEEEEEeCCCCCeEEEEeCC-CcEE
Q 005646 489 ITGFQFLPQDSSKVMVSCAD-SQVR 512 (686)
Q Consensus 489 I~~l~fsp~~~~~l~~~s~D-~~I~ 512 (686)
+..+.+.|.++..++++..+ +.|.
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEEECTTSTTCEEEEESSTTCEE
T ss_pred eEEEEECCCCCCEEEEEEcCCCeEE
Confidence 78899999777777777665 4443
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=58.24 E-value=1.5e+02 Score=29.26 Aligned_cols=204 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred eCCCEEEEEeCCCcEEEEEeecCeeeeeeccCCCCCcceEEeecCCCCceeeeeccccceeEEEeeccCCceEEEeCCcc
Q 005646 260 PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV 339 (686)
Q Consensus 260 pdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (686)
++..++++.+.+|.|+--.+..-.....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g------------------------------------------------ 37 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKG------------------------------------------------ 37 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCC------------------------------------------------
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCC------------------------------------------------
Q ss_pred ccccCCCeEEeccCCCCeeEEEeeCCCEEEEEECCCcEEEEEC---------CCCee---eeEeeCCCCeEEEEEeec--
Q 005646 340 FRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRV---------GNDHC---LRVFPHSNYVTCVHFNPV-- 405 (686)
Q Consensus 340 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~L~s~s~Dg~V~iWd~---------~~~~~---~~~~~h~~~V~~v~fsp~-- 405 (686)
.....++....-+..+..+....++..+..|.++-... ..|.. ...+.....|.++...+.
T Consensus 38 -----~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~ 112 (312)
T 1suu_A 38 -----LSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLT 112 (312)
T ss_dssp -----EECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCC
T ss_pred -----ceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCC
Q ss_pred CCCEEEEEEcCCcEEEEec-------CCCcEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEe
Q 005646 406 DDNYFISGSIDGKVRIWAV-------LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (686)
Q Consensus 406 ~~~~l~sgs~Dg~V~iwd~-------~~~~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 478 (686)
+..+|+..+..|.++...+ ..+...........+..+....+...++..+.+|.+..+....-...-....-.
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv 192 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV 192 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe
Q ss_pred eccccCCCCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCcceeEcCCCCEEEEEeCCCcEEEEeCC
Q 005646 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKDGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 479 ~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~~~~~~~dg~~l~sgs~Dg~V~iWd~~ 544 (686)
..........|.++.... ++..|++.++.|..+...+.
T Consensus 193 ~~i~L~~~d~vv~~~~v~----------------------------~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 193 CGMKLKEGDLFVKVLSVK----------------------------ENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp ECCCCCTTCCEEEEEECT----------------------------TCSEEEEEETTSEEEEEEGG
T ss_pred EeEEeCCCCEEEEEEEEC----------------------------CCCeEEEEECCCceEEEEHH
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=57.39 E-value=96 Score=32.65 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=59.0
Q ss_pred CCeEEEEEeecCCC-EEEEEEcCCcEEEEecCCCc----EEEEe---c------cCCcEEEEEEccC----CCEEEEEec
Q 005646 395 NYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCH----VVDWV---D------IRQIVTAVCYRPD----GQGGIVGSM 456 (686)
Q Consensus 395 ~~V~~v~fsp~~~~-~l~sgs~Dg~V~iwd~~~~~----~~~~~---~------~~~~V~~v~~spd----g~~l~~gs~ 456 (686)
...+.|+|.| ++. .|+.+...|.|++++..... +.... . .......|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4568899999 775 45556788999999754321 11111 1 1356789999996 433333222
Q ss_pred C------------CcEEEEeCCCC---eeee-eeeEEeeccccCCCCCeEEEEEeCCCCCeEEEEeCC
Q 005646 457 M------------GDCRFYNVSDN---HLEL-DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (686)
Q Consensus 457 d------------g~i~iwd~~~~---~~~~-~~~~~~~~~~~~~~~~I~~l~fsp~~~~~l~~~s~D 508 (686)
+ ..|.-|.+... .... ..++.+..........-..|.|.| ++.++++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCC
Confidence 1 13444665432 1110 011111111111223467899999 66666665543
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=55.53 E-value=1.8e+02 Score=29.56 Aligned_cols=89 Identities=6% Similarity=0.071 Sum_probs=57.3
Q ss_pred cEEEEECCCC--eeeeEee-------CCCCeEEEEEeec--C----CCEEEEE-EcCCcEEEEecCCCcEEEEec-----
Q 005646 376 TVRLWRVGND--HCLRVFP-------HSNYVTCVHFNPV--D----DNYFISG-SIDGKVRIWAVLSCHVVDWVD----- 434 (686)
Q Consensus 376 ~V~iWd~~~~--~~~~~~~-------h~~~V~~v~fsp~--~----~~~l~sg-s~Dg~V~iwd~~~~~~~~~~~----- 434 (686)
.|.+||+.++ +.++.+. ....+..+.+... . +.+++.. +..+-|.++|+.+++......
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5789999999 8888775 2356888998821 1 3344433 346789999999887554331
Q ss_pred --------------cCCcEEEEEEccC----CCEEEEEecCCcEEEEeC
Q 005646 435 --------------IRQIVTAVCYRPD----GQGGIVGSMMGDCRFYNV 465 (686)
Q Consensus 435 --------------~~~~V~~v~~spd----g~~l~~gs~dg~i~iwd~ 465 (686)
....+..++++|+ ++.|......+. ++|.+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V 251 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSV 251 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEE
Confidence 1235777888887 666666555442 44444
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=53.12 E-value=1.6e+02 Score=28.29 Aligned_cols=103 Identities=13% Similarity=-0.015 Sum_probs=57.3
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeE-eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC-cEEEEe
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWV 433 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~-~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~-~~~~~~ 433 (686)
.|..++......++. . |+.|..|-......+.. ......|..|+... ...+.-. ||.|..|-.... ++-...
T Consensus 103 ~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~---~~~~~l~-~G~v~~wG~n~~gqlg~p~ 176 (282)
T 3qhy_B 103 GVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV---YTALAVK-NGGVIAWGDNYFGQTTVPA 176 (282)
T ss_dssp SEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS---SEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc---CEEEEEE-CCEEEEecCCCCCCCCCce
Confidence 566776655443333 3 88999997654322211 12345677776543 3333334 899999976542 221111
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
.....|..|+...+. .++. .+|.|+.|=...
T Consensus 177 ~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 177 EAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp GGGSSEEEEEECSSE-EEEE--ETTEEEEEECCT
T ss_pred ecCCCeEEEEecCCE-EEEE--ECCeEEEEECCC
Confidence 223457777665443 3333 589999997654
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=51.82 E-value=1.7e+02 Score=28.15 Aligned_cols=101 Identities=13% Similarity=0.066 Sum_probs=67.7
Q ss_pred CEEEEEECCCcEEEEECCCC------eeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcE-------EEE
Q 005646 366 NYLLSASIDKTVRLWRVGND------HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-------VDW 432 (686)
Q Consensus 366 ~~L~s~s~Dg~V~iWd~~~~------~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~-------~~~ 432 (686)
..++..+.+|.|+...+..- .....+...+.+..+.... +...++..+..|.+..+....-.. +..
T Consensus 81 ~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~ 159 (276)
T 3no0_A 81 NRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQG 159 (276)
T ss_dssp SEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred CEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEE
Confidence 38999999999999886542 2222334556777776665 566888889999988887532111 111
Q ss_pred --eccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 433 --VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 433 --~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
......|.++...+++..++..+..|.++...+..
T Consensus 160 i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 160 IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 12235566665556667888899999998888754
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.44 E-value=37 Score=40.61 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=31.8
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
.+.+++..+ +..++++-+.|+++|||++.+++++...+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 445566666 788999999999999999999998866553
No 363
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=45.15 E-value=2.4e+02 Score=27.87 Aligned_cols=154 Identities=10% Similarity=0.032 Sum_probs=83.2
Q ss_pred eCCCEEEEEECCCcEEEEEC---C------CCeeeeE---eeCCCCeEEEEEeec--CCCEEEEEEcCCcEEEEecCCC-
Q 005646 363 SKNNYLLSASIDKTVRLWRV---G------NDHCLRV---FPHSNYVTCVHFNPV--DDNYFISGSIDGKVRIWAVLSC- 427 (686)
Q Consensus 363 s~~~~L~s~s~Dg~V~iWd~---~------~~~~~~~---~~h~~~V~~v~fsp~--~~~~l~sgs~Dg~V~iwd~~~~- 427 (686)
+....|+..+..|.+.-... . .|.++.. +.....|.++..-+. ++.+++..+.+|.++...+..-
T Consensus 48 ~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~ 127 (323)
T 1wp5_A 48 NTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYK 127 (323)
T ss_dssp ETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGC
T ss_pred CCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhh
Confidence 33346777777777655543 2 2332221 224456766544331 2568999999999999877421
Q ss_pred -----cEEEEe--ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEEeCCCCC
Q 005646 428 -----HVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (686)
Q Consensus 428 -----~~~~~~--~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~fsp~~~~ 500 (686)
.-+... .....+-.+........++..+.+|.+..+....-...-....-...........|.++...+.+..
T Consensus 128 ~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~ 207 (323)
T 1wp5_A 128 AQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDE 207 (323)
T ss_dssp CSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTC
T ss_pred hccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCc
Confidence 111111 1224455555545556788888999998888754221110000011111223355666655542322
Q ss_pred eEEEEeCCCcEEEEeC
Q 005646 501 KVMVSCADSQVRILQG 516 (686)
Q Consensus 501 ~l~~~s~D~~I~iwd~ 516 (686)
.+++.+..|..+..+.
T Consensus 208 ~ll~vt~~G~gKr~~~ 223 (323)
T 1wp5_A 208 SIVVATQRGAVKKMKL 223 (323)
T ss_dssp EEEEEETTSEEEEEEG
T ss_pred EEEEEECCCceEEEEH
Confidence 6777777777766654
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=44.88 E-value=51 Score=36.70 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=31.1
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEEeecCeeeeeecc
Q 005646 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (686)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 290 (686)
..|.++.+ +..+|+|-+.|+++|+|++.+++++.....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34665544 477999999999999999999998887766
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=44.61 E-value=2.3e+02 Score=27.63 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=61.3
Q ss_pred eCCCEEEEEECCCcEEEEEC---C------CCeeee---EeeCCCCeEEEEEee--cCCCEEEEEEcCCcEEEEecCCCc
Q 005646 363 SKNNYLLSASIDKTVRLWRV---G------NDHCLR---VFPHSNYVTCVHFNP--VDDNYFISGSIDGKVRIWAVLSCH 428 (686)
Q Consensus 363 s~~~~L~s~s~Dg~V~iWd~---~------~~~~~~---~~~h~~~V~~v~fsp--~~~~~l~sgs~Dg~V~iwd~~~~~ 428 (686)
+....|+..+..|.+.-... . .|..+. .+.....|..+..-+ .++.+++..+.+|.++--.+..-.
T Consensus 51 ~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~ 130 (307)
T 1zi0_A 51 NTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 130 (307)
T ss_dssp ETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGT
T ss_pred CCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhh
Confidence 33447777777777655543 2 223222 233456677665432 146689999999999998764211
Q ss_pred -------E-EEEeccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 005646 429 -------V-VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 429 -------~-~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~ 467 (686)
. +.+... ..+..+....+...++..+.+|.+..++...
T Consensus 131 ~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~ 176 (307)
T 1zi0_A 131 RLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESS 176 (307)
T ss_dssp TCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred ccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHH
Confidence 1 122222 4454554444555777888899988887754
No 366
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=44.56 E-value=2.7e+02 Score=28.30 Aligned_cols=93 Identities=6% Similarity=0.010 Sum_probs=58.7
Q ss_pred CCCcEEEEECCCCeeeeEee-------------------CCCCeEEEEEeecC----CCEEEEEEcCCcEEEEecCC---
Q 005646 373 IDKTVRLWRVGNDHCLRVFP-------------------HSNYVTCVHFNPVD----DNYFISGSIDGKVRIWAVLS--- 426 (686)
Q Consensus 373 ~Dg~V~iWd~~~~~~~~~~~-------------------h~~~V~~v~fsp~~----~~~l~sgs~Dg~V~iwd~~~--- 426 (686)
....|.|+|+.+++..+.+. -...|..|+++| + ++.|+-....+. ++|.+.+
T Consensus 179 ~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp-~~~~~~~~LYf~plss~-~ly~V~T~~L 256 (381)
T 3q6k_A 179 LRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGD-RDSEGNRPAYYLAGSAI-KVYSVNTKEL 256 (381)
T ss_dssp TTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECC-CCTTSCCEEEEEESSCS-EEEEEEHHHH
T ss_pred CCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecC-CcCCCCeEEEEEECCCC-cEEEEEHHHh
Confidence 46678888888877655542 124688889998 5 666766665542 4454432
Q ss_pred --C---cEEEEeccC---CcEEEEEEc-cCCCEEEEEecCCcEEEEeCCC
Q 005646 427 --C---HVVDWVDIR---QIVTAVCYR-PDGQGGIVGSMMGDCRFYNVSD 467 (686)
Q Consensus 427 --~---~~~~~~~~~---~~V~~v~~s-pdg~~l~~gs~dg~i~iwd~~~ 467 (686)
. ..+...+.+ ..-..+++. .+|..+++--..+.|..|+..+
T Consensus 257 ~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 257 KQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp SSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred hCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 1 122223323 234456776 6787777777788999999875
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.83 E-value=1.6e+02 Score=35.03 Aligned_cols=37 Identities=14% Similarity=0.400 Sum_probs=31.1
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCCCeeeeEee
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP 392 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~~~~~~~ 392 (686)
.+.+++..++. +|++-+.|+++|||++.+++|+.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556666666 99999999999999999999998865
No 368
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=40.77 E-value=3.4e+02 Score=28.35 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=31.0
Q ss_pred eeeecCCC-ccceeeccceEEEEEcCCcc--ccccccccCceec----ccCCceEEEEEeeC
Q 005646 207 ERVRLNEE-DAMFCSKVQRVKVYHCKKRS--KELSALYKGQEIQ----AHDGSILTMKFSPD 261 (686)
Q Consensus 207 ~~~s~~~~-~l~~g~~d~~v~vw~~~~~~--~~~~~~~~~~~l~----~H~~~I~~l~fspd 261 (686)
..|.++++ .++++...|.|++++..... ..+..+.. .... ...+....|+|+|+
T Consensus 19 ~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~-~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 19 ALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHK-LVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTT-TBCCCCSSSCCCSEEEEEECTT
T ss_pred EEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcc-eeccCccccCCCcceeeEeCCC
Confidence 45566775 57777888999999643221 11111110 0111 22567899999996
No 369
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=38.58 E-value=2.9e+02 Score=30.88 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=58.0
Q ss_pred CCeeEEEeeCCC--EEEEEECCCcEEEEECCCCeeeeEeeC-------CCCeEEEEEeecCCCEEEEEEcC-------Cc
Q 005646 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPH-------SNYVTCVHFNPVDDNYFISGSID-------GK 418 (686)
Q Consensus 355 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWd~~~~~~~~~~~h-------~~~V~~v~fsp~~~~~l~sgs~D-------g~ 418 (686)
+.|..|+++|.+ .++.+...+.|..++-....-.....+ ...|.+|+++|.+.+.++.+... +.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 389999999974 666677667766665333332222222 24599999999666666655432 12
Q ss_pred EEEEecCC-Cc---EEEEecc-------CCcEEEEEEccC-CCEEEEEecC
Q 005646 419 VRIWAVLS-CH---VVDWVDI-------RQIVTAVCYRPD-GQGGIVGSMM 457 (686)
Q Consensus 419 V~iwd~~~-~~---~~~~~~~-------~~~V~~v~~spd-g~~l~~gs~d 457 (686)
..||-... ++ .+..... ...+..|+++|. ...++++...
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 45554433 22 2211100 113467899984 4566666633
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=38.04 E-value=44 Score=37.24 Aligned_cols=37 Identities=22% Similarity=0.553 Sum_probs=30.3
Q ss_pred CeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc
Q 005646 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (686)
Q Consensus 396 ~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 435 (686)
.|.++.+ +..++++-+.|.++|+|++.+++++...+.
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665554 578999999999999999999998866554
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=36.95 E-value=3.4e+02 Score=27.34 Aligned_cols=181 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred EEeeCCC-EEEEEECCCcEEEEECCC---------CeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCC---
Q 005646 360 LSWSKNN-YLLSASIDKTVRLWRVGN---------DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS--- 426 (686)
Q Consensus 360 l~~s~~~-~L~s~s~Dg~V~iWd~~~---------~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~--- 426 (686)
+.+-|+. .+++.+.+|.|+--.+.. +..-..+...+.+..+.... ....|+..+..|.+.-+....
T Consensus 1 ~dlI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 1 MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCB
T ss_pred CCcccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcC
Q ss_pred ----------CcEEEEeccCCcEEEEEEcc--CCCEEEEEecCCcEEEEeCCCCeeeeeeeEEeeccccCCCCCeEEEEE
Q 005646 427 ----------CHVVDWVDIRQIVTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (686)
Q Consensus 427 ----------~~~~~~~~~~~~V~~v~~sp--dg~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I~~l~f 494 (686)
-..+.+......+..+.+.. ++.+|+..+..|.++.-.+..-......-+....... ...+..+..
T Consensus 80 ~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~--~d~lv~v~~ 157 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE--GDALVGVAL 157 (370)
T ss_dssp CCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT--TCCEEEEEE
T ss_pred CCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC--CCEEEEEEE
Q ss_pred eCCCCCeEEEEeCCCcEEEEeCCcc-----------------------eeEcC---------------------------
Q 005646 495 LPQDSSKVMVSCADSQVRILQGPNV-----------------------IGKYK--------------------------- 524 (686)
Q Consensus 495 sp~~~~~l~~~s~D~~I~iwd~~~~-----------------------~~~~~--------------------------- 524 (686)
.. +...++..+..|.+-.+..... +...+
T Consensus 158 ~~-~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~ 236 (370)
T 3l6v_A 158 TD-GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPA 236 (370)
T ss_dssp EC-SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------
T ss_pred eC-CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccc
Q ss_pred --------CCCEEEEEeCCCcEEEEeCC
Q 005646 525 --------DGKHIVSAGEDSNVYMWNCI 544 (686)
Q Consensus 525 --------dg~~l~sgs~Dg~V~iWd~~ 544 (686)
++.+|++.++.|..+...+.
T Consensus 237 ~~~~~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 237 VIDVADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp ----------CEEEEEETTSEEEEEEGG
T ss_pred ccccccccCCceEEEeeCCCCEEEEEHH
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=36.56 E-value=1.8e+02 Score=32.97 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=61.0
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEe-cc-------CCcEEEEEEccC-CCEEEEEecCCc----E
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DI-------RQIVTAVCYRPD-GQGGIVGSMMGD----C 460 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~-------~~~V~~v~~spd-g~~l~~gs~dg~----i 460 (686)
...|.+|+++|.+...++.+...+.|...+ ..++.-... .. ...+.+|+++|. ...++++..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999997778888888777765543 223322211 11 236999999984 344555443211 3
Q ss_pred EEEeCCCCeeeeeeeEEeeccc---cCCCCCeEEEEEeCCCCCeEEEEeCCCc
Q 005646 461 RFYNVSDNHLELDAEICVHSKK---KAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (686)
Q Consensus 461 ~iwd~~~~~~~~~~~~~~~~~~---~~~~~~I~~l~fsp~~~~~l~~~s~D~~ 510 (686)
.||...++-...... ...... ......+..++++|.++..+.++...+.
T Consensus 93 ~v~~S~DgG~TW~~~-~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g 144 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIY-ESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG 144 (789)
T ss_dssp EEEEESSTTSEEEEE-ECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC
T ss_pred EEEEECCCCCcceec-cCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC
Confidence 444433322111111 110000 0011135678888866667776664443
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=32.27 E-value=1.4e+02 Score=32.32 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=43.0
Q ss_pred CCeEEEEEeecCCCEEEEEEc------------CCcEEEEecCCCcEEEEecc--CCcEEEEEEccCCCEEEEEe
Q 005646 395 NYVTCVHFNPVDDNYFISGSI------------DGKVRIWAVLSCHVVDWVDI--RQIVTAVCYRPDGQGGIVGS 455 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~------------Dg~V~iwd~~~~~~~~~~~~--~~~V~~v~~spdg~~l~~gs 455 (686)
.....|.|.+ ++.+.++-.. ...|..++..++++..+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4567899998 8887773221 12577777778887765542 35689999999999988764
No 374
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=31.57 E-value=2.8e+02 Score=30.95 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=60.6
Q ss_pred CCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEecc-------CCcEEEEEEcc-CCCEEEEEecC-------Cc
Q 005646 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-------RQIVTAVCYRP-DGQGGIVGSMM-------GD 459 (686)
Q Consensus 395 ~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-------~~~V~~v~~sp-dg~~l~~gs~d-------g~ 459 (686)
+.|..|+++|.+.+.++.+...+.|..++=....-...... ...|.+|+++| +...++++... +.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 38999999996667788888677666554322221222211 23589999998 44455554421 12
Q ss_pred EEEEeCCCCeeeeeeeEEeeccc---cCCCCCeEEEEEeCCCCCeEEEEeC
Q 005646 460 CRFYNVSDNHLELDAEICVHSKK---KAPCKRITGFQFLPQDSSKVMVSCA 507 (686)
Q Consensus 460 i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~I~~l~fsp~~~~~l~~~s~ 507 (686)
..||...++-..... +...... ......+..|+++|.++..|+++..
T Consensus 103 ~~l~~S~DgG~TW~~-~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 103 GAILRSTDRGETWEK-TILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CEEEEESSSSSSCEE-EECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccEEEeCCCCCCccc-CCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 456655433222111 1110000 0001124679999977777777763
No 375
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=27.61 E-value=4.1e+02 Score=25.35 Aligned_cols=104 Identities=15% Similarity=-0.021 Sum_probs=55.0
Q ss_pred CeeEEEeeCCCEEEEEECCCcEEEEECCCCeeeeE-eeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCC-cEEEEe
Q 005646 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWV 433 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~Dg~V~iWd~~~~~~~~~-~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~-~~~~~~ 433 (686)
.|..++......++. . |+.|..|-......+.. ......|..|+... ...+.- .||.|..|-.... ++-.-.
T Consensus 142 ~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~---~hs~al-~~G~v~~wG~n~~gqlg~p~ 215 (282)
T 3qhy_B 142 GVTALDGGVYTALAV-K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGI---FHSLAL-KDGKVIAWGDNRYKQTTVPT 215 (282)
T ss_dssp SEEEEEECSSEEEEE-E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS---SEEEEE-ETTEEEEEECCTTSTTCCCG
T ss_pred CeEEEEcccCEEEEE-E-CCEEEEecCCCCCCCCCceecCCCeEEEEecC---CEEEEE-ECCeEEEEECCCCCCCCCCc
Confidence 455665544333332 3 68888887654322211 11235677777543 333333 5999999976543 221111
Q ss_pred ccCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCC
Q 005646 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (686)
Q Consensus 434 ~~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~ 468 (686)
.....|..|+..... .++. . ||.++.|=....
T Consensus 216 ~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 216 EALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp GGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTCC
T ss_pred ccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCCC
Confidence 122346666655443 3333 3 899999976543
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=27.29 E-value=1.4e+02 Score=32.52 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=40.2
Q ss_pred eEEEEEeecCCCEEEEEEcC------------CcEEEEecCCCcEEEEec--cCCcEEEEEEccCCCEEEEE
Q 005646 397 VTCVHFNPVDDNYFISGSID------------GKVRIWAVLSCHVVDWVD--IRQIVTAVCYRPDGQGGIVG 454 (686)
Q Consensus 397 V~~v~fsp~~~~~l~sgs~D------------g~V~iwd~~~~~~~~~~~--~~~~V~~v~~spdg~~l~~g 454 (686)
.--|+|+| .+++++.-..+ ..+.+.+..++++..+.. ....++.++|+||++.|++.
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 46689999 88866654322 235666777777765443 45679999999999988775
No 377
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=27.13 E-value=4.2e+02 Score=25.31 Aligned_cols=111 Identities=10% Similarity=0.102 Sum_probs=65.7
Q ss_pred CeeEEEeeCCC-EEEEEECCCcEEEEECCC---------CeeeeEeeCCCCeEEEEEeecCCCEEEEEEcCCcEEEEecC
Q 005646 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGN---------DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (686)
Q Consensus 356 ~V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~---------~~~~~~~~h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~ 425 (686)
.+..+...... .|+..+..|.+..+.... |.....+.....|..+...+ ++..++..+..|.++...+.
T Consensus 117 ~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 117 EVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN-GEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp CEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES-SCSEEEEEETTSCEEEEEGG
T ss_pred EEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEeEHH
Confidence 33333333333 777778888877776531 22222234557777776665 66789999999999988764
Q ss_pred CC-------cEEEEeccCCcEEEEEEccCCCEEEEEecCCcEEE--EeCCC
Q 005646 426 SC-------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF--YNVSD 467 (686)
Q Consensus 426 ~~-------~~~~~~~~~~~V~~v~~spdg~~l~~gs~dg~i~i--wd~~~ 467 (686)
.- +-+......+.+..+....+...++..+.+|.+.. ++...
T Consensus 196 e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 196 EIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp GSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred HcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 32 11111133344544433334446777778888877 87654
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=23.31 E-value=1.9e+02 Score=31.32 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=39.5
Q ss_pred CeeEEEeeCCCEEEEEECC-------------CcEEEEECCCCeeeeEee--CCCCeEEEEEeecCCCEEEEEE
Q 005646 356 EILDLSWSKNNYLLSASID-------------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGS 414 (686)
Q Consensus 356 ~V~~l~~s~~~~L~s~s~D-------------g~V~iWd~~~~~~~~~~~--h~~~V~~v~fsp~~~~~l~sgs 414 (686)
....|.|.++|.|..+... ..|..++..+++....+. ....++.++|+| |++.|++.-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEEE
Confidence 4568999999944443321 156666776777665554 346799999999 888777664
No 379
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=21.43 E-value=6.5e+02 Score=28.05 Aligned_cols=120 Identities=8% Similarity=0.028 Sum_probs=0.0
Q ss_pred CCCeEEEEEeecCCCEEEEEEcCCcEEEEecCCCcEEEEec------------cCCcEEEEEEcc-CCCEEEEEec----
Q 005646 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD------------IRQIVTAVCYRP-DGQGGIVGSM---- 456 (686)
Q Consensus 394 ~~~V~~v~fsp~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~------------~~~~V~~v~~sp-dg~~l~~gs~---- 456 (686)
.+.|.+|+++|.+.+.++.+...|.|...+=....-..... ....+.+++++| +...++++..
T Consensus 20 ~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~ 99 (763)
T 3a0f_A 20 GGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQ 99 (763)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTT
T ss_pred CCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccccc
Q ss_pred -CCcEEEEeCCCCeeeeeeeEEeeccccCCCCCe--EEEEEeCCCCCeEEEEeCCCcEEE
Q 005646 457 -MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI--TGFQFLPQDSSKVMVSCADSQVRI 513 (686)
Q Consensus 457 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~I--~~l~fsp~~~~~l~~~s~D~~I~i 513 (686)
.....||...++-.................... ..++++|.+...+.++...+.|..
T Consensus 100 ~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~ 159 (763)
T 3a0f_A 100 WDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR 159 (763)
T ss_dssp TCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE
T ss_pred CCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=20.44 E-value=6.5e+02 Score=25.11 Aligned_cols=184 Identities=14% Similarity=0.079 Sum_probs=95.2
Q ss_pred eeEEEeeCCC-EEEEEECCCcEEEEECCCCe-----------eeeEee--CCCCeEEEEEeecCCCEEEEEEcCCcEEEE
Q 005646 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-----------CLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (686)
Q Consensus 357 V~~l~~s~~~-~L~s~s~Dg~V~iWd~~~~~-----------~~~~~~--h~~~V~~v~fsp~~~~~l~sgs~Dg~V~iw 422 (686)
+..++.+... +.+.-..||.|..|-..... ....+. ....|..|+. .....+.-..||.|+.|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEe
Confidence 3334444433 66666778888888543210 111111 2235666665 45666777789999999
Q ss_pred ecCCC-c--------EE--EEec--cCCcEEEEEEccCCCEEEEEecCCcEEEEeCCCCeee-e---eeeEEeeccccCC
Q 005646 423 AVLSC-H--------VV--DWVD--IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE-L---DAEICVHSKKKAP 485 (686)
Q Consensus 423 d~~~~-~--------~~--~~~~--~~~~V~~v~~spdg~~l~~gs~dg~i~iwd~~~~~~~-~---~~~~~~~~~~~~~ 485 (686)
-.... + .. .... ....|..++........++-..+|.|+.|=....... . .............
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 65321 1 11 1111 1234666665543356666678999999965321110 0 0000000001111
Q ss_pred CCCeEEEEEeCCCCCeEEEEeCCCcEEEEeCCc-------------------------ceeEcCCCCEEEEEeCCCcEEE
Q 005646 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-------------------------VIGKYKDGKHIVSAGEDSNVYM 540 (686)
Q Consensus 486 ~~~I~~l~fsp~~~~~l~~~s~D~~I~iwd~~~-------------------------~~~~~~dg~~l~sgs~Dg~V~i 540 (686)
...|..++... ...++-..|+.|..|-... .+.+.....+.+.-.+||.|+.
T Consensus 264 ~~~v~~v~~G~---~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~ 340 (389)
T 3kci_A 264 GLGVVKVECGS---QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYT 340 (389)
T ss_dssp TSCEEEEEEET---TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEE
T ss_pred CCcEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEE
Confidence 23466665543 4455556788888885321 1122223444555577888888
Q ss_pred EeCCCC
Q 005646 541 WNCIGH 546 (686)
Q Consensus 541 Wd~~~~ 546 (686)
|-.+..
T Consensus 341 wG~n~~ 346 (389)
T 3kci_A 341 WGDNDE 346 (389)
T ss_dssp EECCTT
T ss_pred eeCCCC
Confidence 887653
No 381
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.14 E-value=4.6e+02 Score=27.64 Aligned_cols=76 Identities=9% Similarity=0.125 Sum_probs=46.8
Q ss_pred CCeEEeccCCCCeeEEEeeC----CC---EEEEEECCCcEEEEECC-CCe-------eeeEe---eCCCCeEEEEEeecC
Q 005646 345 KPLHEFHGHSGEILDLSWSK----NN---YLLSASIDKTVRLWRVG-NDH-------CLRVF---PHSNYVTCVHFNPVD 406 (686)
Q Consensus 345 ~~~~~l~~h~~~V~~l~~s~----~~---~L~s~s~Dg~V~iWd~~-~~~-------~~~~~---~h~~~V~~v~fsp~~ 406 (686)
.|+....+-....+.|+... ++ .++.|..+|.|.-.-+. .+. .+..+ ....+|..|.+++ +
T Consensus 394 ~Pll~~~~~~~~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~-~ 472 (495)
T 1q47_A 394 RPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELST-K 472 (495)
T ss_dssp SCSEEESSSSSCEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEET-T
T ss_pred ccEEEecCCccceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcC-C
Confidence 44444333222456665543 24 67889999987554432 211 22222 3568999999999 8
Q ss_pred CCEEEEEEcCCcEEE
Q 005646 407 DNYFISGSIDGKVRI 421 (686)
Q Consensus 407 ~~~l~sgs~Dg~V~i 421 (686)
..+|+.++.++.++|
T Consensus 473 ~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 473 QQQLYIGSTAGVAQL 487 (495)
T ss_dssp TTEEEEEBSSCEEEE
T ss_pred CCEEEEEECCeEEEE
Confidence 899999998776655
Done!