Query 005651
Match_columns 685
No_of_seqs 359 out of 1408
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 11:40:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14215 bHLH-MYC_N: bHLH-MYC 100.0 9.1E-53 2E-57 408.6 13.1 163 69-255 1-163 (163)
2 cd00083 HLH Helix-loop-helix d 99.3 8.4E-12 1.8E-16 101.1 5.9 52 503-554 5-59 (60)
3 PF00010 HLH: Helix-loop-helix 99.2 1.1E-11 2.4E-16 99.6 5.3 49 503-551 2-55 (55)
4 smart00353 HLH helix loop heli 99.2 2.2E-11 4.9E-16 96.6 6.2 49 507-555 1-52 (53)
5 KOG1318 Helix loop helix trans 99.0 1.4E-09 3E-14 119.0 11.1 55 502-556 233-291 (411)
6 KOG1319 bHLHZip transcription 98.7 3E-08 6.5E-13 97.4 7.0 69 504-572 64-139 (229)
7 KOG2483 Upstream transcription 98.7 9.8E-08 2.1E-12 98.2 10.6 78 498-575 55-135 (232)
8 cd04897 ACT_ACR_3 ACT domain-c 98.2 1.7E-05 3.7E-10 68.4 10.1 67 617-683 3-74 (75)
9 cd04927 ACT_ACR-like_2 Second 98.1 2.7E-05 5.8E-10 66.9 9.2 69 616-684 1-74 (76)
10 KOG3561 Aryl-hydrocarbon recep 98.0 4.7E-06 1E-10 98.3 5.1 51 503-553 21-75 (803)
11 cd04895 ACT_ACR_1 ACT domain-c 98.0 4.8E-05 1E-09 65.2 9.8 68 617-684 3-71 (72)
12 KOG4304 Transcriptional repres 98.0 4.3E-06 9.4E-11 87.3 3.5 54 504-557 34-95 (250)
13 cd04896 ACT_ACR-like_3 ACT dom 97.8 0.00012 2.7E-09 63.2 8.9 66 617-682 2-73 (75)
14 KOG2588 Predicted DNA-binding 97.7 3.7E-05 8E-10 91.1 5.1 67 499-565 273-340 (953)
15 KOG0561 bHLH transcription fac 97.5 7.4E-05 1.6E-09 78.6 3.9 61 506-566 64-126 (373)
16 cd04900 ACT_UUR-like_1 ACT dom 97.5 0.001 2.2E-08 56.3 10.2 66 617-682 3-70 (73)
17 cd04925 ACT_ACR_2 ACT domain-c 97.3 0.0017 3.6E-08 55.4 9.4 65 617-681 2-72 (74)
18 KOG3960 Myogenic helix-loop-he 97.2 0.00069 1.5E-08 70.0 7.1 62 503-564 119-182 (284)
19 cd04928 ACT_TyrKc Uncharacteri 97.2 0.0032 6.9E-08 53.5 9.3 64 617-681 3-67 (68)
20 PLN03217 transcription factor 97.1 0.0012 2.5E-08 58.0 6.4 51 515-565 20-76 (93)
21 cd04899 ACT_ACR-UUR-like_2 C-t 97.1 0.0043 9.3E-08 51.2 9.6 66 617-683 2-68 (70)
22 KOG4029 Transcription factor H 97.0 0.00064 1.4E-08 70.1 4.1 58 502-559 109-170 (228)
23 cd04926 ACT_ACR_4 C-terminal 97.0 0.0071 1.5E-07 51.2 9.7 67 617-684 3-70 (72)
24 PF13740 ACT_6: ACT domain; PD 96.6 0.018 4E-07 49.2 9.2 67 615-683 2-68 (76)
25 cd04873 ACT_UUR-ACR-like ACT d 96.2 0.049 1.1E-06 44.3 9.6 65 617-682 2-67 (70)
26 PRK05007 PII uridylyl-transfer 96.2 0.021 4.5E-07 69.8 10.2 70 613-682 806-879 (884)
27 PF01842 ACT: ACT domain; Int 96.0 0.062 1.3E-06 43.2 9.2 61 617-681 2-65 (66)
28 cd04893 ACT_GcvR_1 ACT domains 96.0 0.063 1.4E-06 46.0 9.7 65 616-682 2-66 (77)
29 cd04869 ACT_GcvR_2 ACT domains 95.7 0.1 2.2E-06 44.4 9.4 66 617-683 1-72 (81)
30 cd04872 ACT_1ZPV ACT domain pr 95.6 0.052 1.1E-06 47.5 7.8 67 616-682 2-68 (88)
31 PRK00194 hypothetical protein; 95.4 0.081 1.7E-06 46.2 8.2 67 615-681 3-69 (90)
32 cd04875 ACT_F4HF-DF N-terminal 95.3 0.16 3.4E-06 42.8 9.2 66 617-682 1-68 (74)
33 cd04870 ACT_PSP_1 CT domains f 95.2 0.14 3E-06 43.5 8.8 66 617-683 1-66 (75)
34 PRK01759 glnD PII uridylyl-tra 95.2 0.074 1.6E-06 64.9 9.7 68 614-681 782-853 (854)
35 PRK03381 PII uridylyl-transfer 94.7 0.17 3.6E-06 61.2 10.8 65 615-681 707-772 (774)
36 PRK00275 glnD PII uridylyl-tra 94.6 0.14 3.1E-06 62.8 10.1 70 614-683 813-887 (895)
37 PRK05092 PII uridylyl-transfer 94.6 0.21 4.5E-06 61.6 11.5 69 614-682 842-915 (931)
38 PF13291 ACT_4: ACT domain; PD 94.3 0.61 1.3E-05 39.7 10.5 57 615-675 6-64 (80)
39 PRK03059 PII uridylyl-transfer 94.2 0.24 5.1E-06 60.7 10.6 67 614-681 785-854 (856)
40 PRK04374 PII uridylyl-transfer 94.2 0.23 4.9E-06 60.9 10.5 70 614-683 795-868 (869)
41 PRK03381 PII uridylyl-transfer 93.8 0.32 6.9E-06 58.9 10.6 71 613-683 597-668 (774)
42 cd04886 ACT_ThrD-II-like C-ter 93.2 0.5 1.1E-05 38.1 7.8 60 618-678 1-65 (73)
43 TIGR01693 UTase_glnD [Protein- 93.2 0.35 7.5E-06 59.1 9.7 68 614-681 778-849 (850)
44 PRK05007 PII uridylyl-transfer 93.2 0.53 1.1E-05 57.9 11.2 70 613-682 699-773 (884)
45 KOG4447 Transcription factor T 93.1 0.081 1.8E-06 51.4 3.2 52 502-553 78-131 (173)
46 COG2844 GlnD UTP:GlnB (protein 93.1 0.29 6.3E-06 58.6 8.4 77 605-682 779-858 (867)
47 TIGR01693 UTase_glnD [Protein- 92.7 0.5 1.1E-05 57.8 10.1 71 613-683 666-742 (850)
48 PRK01759 glnD PII uridylyl-tra 92.6 0.68 1.5E-05 56.7 11.0 70 613-682 675-749 (854)
49 KOG3560 Aryl-hydrocarbon recep 92.3 0.12 2.6E-06 59.0 3.6 38 511-548 34-75 (712)
50 cd04887 ACT_MalLac-Enz ACT_Mal 92.2 1.6 3.4E-05 36.2 9.6 47 618-664 2-49 (74)
51 KOG3910 Helix loop helix trans 92.2 0.1 2.3E-06 58.8 3.1 56 502-557 526-585 (632)
52 cd04888 ACT_PheB-BS C-terminal 91.6 0.82 1.8E-05 38.0 7.2 62 617-678 2-64 (76)
53 PRK03059 PII uridylyl-transfer 91.4 0.9 2E-05 55.7 10.2 70 613-682 676-750 (856)
54 cd02116 ACT ACT domains are co 90.8 1.3 2.9E-05 32.3 7.1 35 618-652 1-35 (60)
55 TIGR00655 PurU formyltetrahydr 90.6 1.6 3.4E-05 46.8 10.0 63 617-679 2-66 (280)
56 PRK04435 hypothetical protein; 90.6 1.3 2.9E-05 42.9 8.6 69 611-679 65-134 (147)
57 cd04876 ACT_RelA-SpoT ACT dom 90.5 1.5 3.3E-05 33.9 7.4 47 618-664 1-48 (71)
58 PRK00275 glnD PII uridylyl-tra 90.2 1.3 2.8E-05 54.7 10.0 69 614-682 703-778 (895)
59 PRK05092 PII uridylyl-transfer 89.2 1.8 3.8E-05 53.7 10.2 68 614-681 731-804 (931)
60 cd04894 ACT_ACR-like_1 ACT dom 89.1 2 4.4E-05 36.3 7.2 63 617-679 2-66 (69)
61 PRK04374 PII uridylyl-transfer 88.8 1.9 4.2E-05 53.0 10.0 71 613-683 688-761 (869)
62 PRK06027 purU formyltetrahydro 88.6 3 6.6E-05 44.8 10.2 69 615-683 6-76 (286)
63 cd04878 ACT_AHAS N-terminal AC 87.9 3.3 7.2E-05 33.1 7.9 47 617-663 2-50 (72)
64 cd04874 ACT_Af1403 N-terminal 87.7 3.8 8.2E-05 33.0 8.1 59 617-678 2-61 (72)
65 PRK08577 hypothetical protein; 87.5 4.6 0.0001 38.4 9.7 65 615-679 56-122 (136)
66 KOG3582 Mlx interactors and re 87.5 0.19 4.2E-06 58.7 0.4 74 502-575 651-729 (856)
67 cd04883 ACT_AcuB C-terminal AC 87.2 4.1 8.9E-05 33.4 8.2 60 617-680 3-64 (72)
68 cd04881 ACT_HSDH-Hom ACT_HSDH_ 87.1 4.5 9.8E-05 33.0 8.4 57 617-677 2-60 (79)
69 cd04880 ACT_AAAH-PDT-like ACT 86.7 3.5 7.7E-05 34.6 7.6 61 619-679 3-66 (75)
70 cd04879 ACT_3PGDH-like ACT_3PG 86.4 3.5 7.6E-05 32.8 7.2 59 618-680 2-62 (71)
71 cd04903 ACT_LSD C-terminal ACT 86.3 3.8 8.1E-05 32.8 7.3 59 617-679 1-61 (71)
72 cd04909 ACT_PDH-BS C-terminal 86.1 3.6 7.9E-05 33.7 7.3 60 617-679 3-64 (69)
73 cd04882 ACT_Bt0572_2 C-termina 86.1 3.2 6.9E-05 33.2 6.8 57 618-680 2-60 (65)
74 cd04905 ACT_CM-PDT C-terminal 86.0 6.1 0.00013 33.7 8.8 61 617-678 3-64 (80)
75 KOG3559 Transcriptional regula 85.0 0.83 1.8E-05 50.8 3.6 42 508-549 7-52 (598)
76 cd04877 ACT_TyrR N-terminal AC 84.4 6 0.00013 33.3 7.9 37 617-654 2-38 (74)
77 cd04908 ACT_Bt0572_1 N-termina 83.5 7.8 0.00017 31.8 8.1 57 617-679 3-59 (66)
78 PRK13010 purU formyltetrahydro 82.9 5.3 0.00011 43.1 8.6 68 615-682 9-79 (289)
79 PRK13011 formyltetrahydrofolat 82.0 8.2 0.00018 41.6 9.6 68 615-683 7-76 (286)
80 cd04884 ACT_CBS C-terminal ACT 81.7 7.8 0.00017 32.2 7.5 62 618-680 2-66 (72)
81 KOG3898 Transcription factor N 80.8 1.2 2.7E-05 47.0 2.9 50 503-552 73-125 (254)
82 cd04889 ACT_PDH-BS-like C-term 80.5 9.9 0.00022 29.9 7.4 45 618-662 1-46 (56)
83 PF13185 GAF_2: GAF domain; PD 80.5 1.6 3.4E-05 39.7 3.2 61 184-248 68-133 (148)
84 PRK07334 threonine dehydratase 79.5 12 0.00027 41.8 10.4 52 613-664 324-380 (403)
85 smart00065 GAF Domain present 78.4 21 0.00045 30.6 9.5 73 181-255 54-135 (149)
86 COG2844 GlnD UTP:GlnB (protein 76.2 8.9 0.00019 46.6 8.3 71 607-677 676-747 (867)
87 TIGR01817 nifA Nif-specific re 74.3 3.9 8.5E-05 47.3 4.8 74 181-256 71-153 (534)
88 COG3830 ACT domain-containing 74.3 5.6 0.00012 35.9 4.7 68 615-682 3-70 (90)
89 TIGR00119 acolac_sm acetolacta 74.1 11 0.00024 37.2 7.1 62 617-680 3-66 (157)
90 KOG4395 Transcription factor A 73.4 5.3 0.00012 42.2 4.9 50 505-554 177-229 (285)
91 KOG3558 Hypoxia-inducible fact 72.7 2.9 6.2E-05 49.5 3.1 41 508-548 52-96 (768)
92 COG0788 PurU Formyltetrahydrof 72.0 19 0.00041 38.7 8.6 66 614-679 6-73 (287)
93 cd04904 ACT_AAAH ACT domain of 70.9 22 0.00047 30.2 7.4 58 619-679 4-62 (74)
94 PF13710 ACT_5: ACT domain; PD 70.1 9.4 0.0002 31.8 4.9 56 624-681 1-58 (63)
95 PRK11895 ilvH acetolactate syn 69.7 16 0.00034 36.3 7.1 62 617-680 4-67 (161)
96 cd04931 ACT_PAH ACT domain of 69.0 33 0.00072 30.7 8.4 61 616-678 15-76 (90)
97 PRK11589 gcvR glycine cleavage 67.4 14 0.00031 37.5 6.5 65 614-680 7-71 (190)
98 smart00338 BRLZ basic region l 66.4 13 0.00028 30.9 5.0 32 544-575 25-56 (65)
99 cd04901 ACT_3PGDH C-terminal A 65.9 7.1 0.00015 31.7 3.3 56 619-678 3-58 (69)
100 cd04902 ACT_3PGDH-xct C-termin 65.8 15 0.00033 29.9 5.3 58 618-679 2-61 (73)
101 PRK06737 acetolactate synthase 65.0 21 0.00047 31.1 6.2 61 617-679 4-66 (76)
102 PRK11061 fused phosphoenolpyru 64.4 11 0.00025 45.7 6.0 59 181-241 70-133 (748)
103 PF05088 Bac_GDH: Bacterial NA 62.8 35 0.00075 44.8 10.0 69 614-682 488-562 (1528)
104 PRK11152 ilvM acetolactate syn 62.8 39 0.00084 29.5 7.4 61 617-680 5-67 (76)
105 PF00170 bZIP_1: bZIP transcri 61.2 19 0.00042 29.7 5.1 32 544-575 25-56 (64)
106 cd04906 ACT_ThrD-I_1 First of 59.0 62 0.0013 28.1 8.1 63 615-679 1-64 (85)
107 PF06005 DUF904: Protein of un 58.2 31 0.00066 29.9 5.9 33 540-572 13-45 (72)
108 CHL00100 ilvH acetohydroxyacid 58.1 36 0.00077 34.3 7.2 64 617-682 4-69 (174)
109 cd04922 ACT_AKi-HSDH-ThrA_2 AC 57.4 71 0.0015 25.4 7.8 59 617-681 3-64 (66)
110 PRK00227 glnD PII uridylyl-tra 56.6 44 0.00096 40.4 9.0 66 617-683 548-615 (693)
111 PRK13562 acetolactate synthase 55.6 34 0.00073 30.6 5.8 64 617-680 4-68 (84)
112 cd04892 ACT_AK-like_2 ACT doma 54.9 63 0.0014 24.9 7.0 34 617-650 2-38 (65)
113 PF07716 bZIP_2: Basic region 54.8 30 0.00065 27.8 5.0 30 544-573 24-53 (54)
114 cd04885 ACT_ThrD-I Tandem C-te 53.3 42 0.00091 27.7 5.9 34 618-652 1-34 (68)
115 cd04916 ACT_AKiii-YclM-BS_2 AC 51.2 91 0.002 24.7 7.5 59 617-681 3-64 (66)
116 PRK10872 relA (p)ppGpp synthet 51.2 86 0.0019 38.4 10.2 50 616-665 667-718 (743)
117 PRK08198 threonine dehydratase 51.0 72 0.0016 35.6 9.1 67 612-679 324-395 (404)
118 cd04929 ACT_TPH ACT domain of 49.2 87 0.0019 26.9 7.3 56 621-679 6-62 (74)
119 PRK11589 gcvR glycine cleavage 49.0 98 0.0021 31.5 8.8 67 616-683 96-168 (190)
120 TIGR00691 spoT_relA (p)ppGpp s 47.8 96 0.0021 37.5 10.0 50 615-664 610-660 (683)
121 PF09006 Surfac_D-trimer: Lung 46.6 45 0.00098 26.6 4.6 28 547-574 1-28 (46)
122 PRK11092 bifunctional (p)ppGpp 46.6 1E+02 0.0023 37.4 9.9 51 615-665 626-677 (702)
123 cd04919 ACT_AK-Hom3_2 ACT doma 46.2 1.3E+02 0.0027 24.1 7.6 59 617-681 3-64 (66)
124 TIGR01127 ilvA_1Cterm threonin 42.8 1.2E+02 0.0025 33.7 9.0 68 611-679 301-373 (380)
125 KOG4447 Transcription factor T 42.3 43 0.00093 33.1 4.8 43 509-551 29-73 (173)
126 PF02344 Myc-LZ: Myc leucine z 42.1 26 0.00056 25.8 2.4 19 508-526 11-29 (32)
127 cd04924 ACT_AK-Arch_2 ACT doma 41.8 1.6E+02 0.0035 23.2 7.5 59 617-681 3-64 (66)
128 PRK15422 septal ring assembly 41.7 65 0.0014 28.5 5.3 31 540-570 13-43 (79)
129 COG3074 Uncharacterized protei 40.9 69 0.0015 27.8 5.2 28 540-567 13-40 (79)
130 PRK13729 conjugal transfer pil 40.8 1.4E+02 0.0029 34.8 9.2 59 504-574 67-126 (475)
131 KOG3582 Mlx interactors and re 40.6 9 0.0002 45.5 -0.1 58 503-563 788-850 (856)
132 COG4747 ACT domain-containing 40.4 1.2E+02 0.0027 29.0 7.3 44 617-660 5-48 (142)
133 cd04890 ACT_AK-like_1 ACT doma 39.5 79 0.0017 25.2 5.3 25 624-648 12-36 (62)
134 cd04912 ACT_AKiii-LysC-EC-like 39.4 1.3E+02 0.0028 25.4 6.9 31 617-647 3-36 (75)
135 COG4492 PheB ACT domain-contai 38.9 1.4E+02 0.0031 29.1 7.6 66 614-679 71-137 (150)
136 KOG3119 Basic region leucine z 38.6 1.3E+02 0.0028 32.2 8.2 28 548-575 218-245 (269)
137 PF01590 GAF: GAF domain; Int 38.5 34 0.00074 31.1 3.4 59 181-240 54-131 (154)
138 PRK08178 acetolactate synthase 38.2 1.4E+02 0.003 27.4 7.1 65 615-680 8-72 (96)
139 PRK06382 threonine dehydratase 38.2 1.2E+02 0.0026 34.0 8.4 68 611-679 326-398 (406)
140 PF02120 Flg_hook: Flagellar h 38.0 97 0.0021 26.4 6.0 48 604-651 26-79 (85)
141 cd04937 ACT_AKi-DapG-BS_2 ACT 37.9 2E+02 0.0044 23.2 7.6 27 618-644 4-33 (64)
142 cd04932 ACT_AKiii-LysC-EC_1 AC 37.1 2.3E+02 0.0049 24.3 8.0 32 617-648 3-37 (75)
143 PF08317 Spc7: Spc7 kinetochor 34.1 1.5E+02 0.0033 32.3 8.1 26 511-536 183-208 (325)
144 cd04930 ACT_TH ACT domain of t 33.3 1.5E+02 0.0033 27.7 6.9 47 617-663 43-90 (115)
145 KOG3584 cAMP response element 30.9 58 0.0013 35.3 4.0 31 545-575 312-342 (348)
146 cd04907 ACT_ThrD-I_2 Second of 30.4 2.8E+02 0.006 24.2 7.6 62 615-679 1-63 (81)
147 PF13805 Pil1: Eisosome compon 30.0 2E+02 0.0043 31.1 7.8 28 505-532 138-165 (271)
148 cd04923 ACT_AK-LysC-DapG-like_ 29.3 2.7E+02 0.0058 21.5 6.8 57 617-681 2-61 (63)
149 PRK05771 V-type ATP synthase s 29.0 2.3E+02 0.005 33.9 9.1 61 511-571 49-119 (646)
150 TIGR00103 DNA_YbaB_EbfC DNA-bi 28.9 4.1E+02 0.0089 24.3 8.8 14 607-620 42-55 (102)
151 PF04420 CHD5: CHD5-like prote 28.5 1.4E+02 0.0029 29.6 6.0 52 508-570 40-91 (161)
152 PLN02678 seryl-tRNA synthetase 28.5 2.6E+02 0.0056 32.3 9.0 40 540-579 73-112 (448)
153 PRK00227 glnD PII uridylyl-tra 28.3 79 0.0017 38.4 5.0 60 616-682 632-691 (693)
154 cd04918 ACT_AK1-AT_2 ACT domai 28.0 2.8E+02 0.0061 22.6 6.9 29 624-652 12-40 (65)
155 cd04868 ACT_AK-like ACT domain 27.7 2.2E+02 0.0047 21.2 5.9 26 625-650 13-38 (60)
156 PRK15429 formate hydrogenlyase 27.7 74 0.0016 38.2 4.7 75 181-255 254-337 (686)
157 PF15458 NTR2: Nineteen comple 27.1 2.5E+02 0.0055 29.8 8.1 65 506-573 143-236 (254)
158 PF10393 Matrilin_ccoil: Trime 27.0 1.6E+02 0.0034 23.7 4.8 28 540-567 18-45 (47)
159 PRK15385 magnesium transport p 26.6 3.3E+02 0.0072 28.7 8.6 64 615-678 142-210 (225)
160 PF09849 DUF2076: Uncharacteri 26.4 1.7E+02 0.0038 31.1 6.7 17 514-530 6-22 (247)
161 PRK05431 seryl-tRNA synthetase 25.7 4.5E+02 0.0098 29.9 10.3 41 540-580 68-108 (425)
162 cd04915 ACT_AK-Ectoine_2 ACT d 25.6 3.4E+02 0.0073 22.4 7.0 27 625-651 14-40 (66)
163 PF14197 Cep57_CLD_2: Centroso 25.5 96 0.0021 26.6 3.7 28 538-565 40-67 (69)
164 COG1076 DjlA DnaJ-domain-conta 24.8 65 0.0014 32.0 3.0 57 506-563 116-172 (174)
165 TIGR00414 serS seryl-tRNA synt 24.7 2.5E+02 0.0055 31.9 8.0 40 540-579 71-110 (418)
166 PF13840 ACT_7: ACT domain ; P 24.6 1.1E+02 0.0023 25.4 3.8 34 614-647 5-42 (65)
167 PF07544 Med9: RNA polymerase 24.3 2.2E+02 0.0048 25.0 5.9 49 515-565 31-79 (83)
168 PF14992 TMCO5: TMCO5 family 24.2 99 0.0021 33.5 4.3 26 539-564 145-170 (280)
169 cd04934 ACT_AK-Hom3_1 CT domai 24.1 3.9E+02 0.0085 22.7 7.3 32 617-648 3-37 (73)
170 cd04933 ACT_AK1-AT_1 ACT domai 23.9 4E+02 0.0087 23.2 7.4 32 617-648 3-37 (78)
171 PF02185 HR1: Hr1 repeat; Int 23.8 4.4E+02 0.0095 22.1 7.6 47 516-566 15-61 (70)
172 PRK05022 anaerobic nitric oxid 23.6 84 0.0018 36.4 4.0 75 181-256 68-153 (509)
173 PF09789 DUF2353: Uncharacteri 23.4 2.9E+02 0.0062 30.6 7.8 41 535-575 69-109 (319)
174 PF04977 DivIC: Septum formati 23.3 1.2E+02 0.0027 25.3 4.1 25 547-571 26-50 (80)
175 cd04936 ACT_AKii-LysC-BS-like_ 23.0 3.6E+02 0.0077 20.8 6.9 50 624-681 12-61 (63)
176 PF05164 ZapA: Cell division p 23.0 4.7E+02 0.01 22.3 7.8 57 515-573 28-86 (89)
177 cd04921 ACT_AKi-HSDH-ThrA-like 22.0 2.8E+02 0.0062 23.0 6.0 33 617-649 3-38 (80)
178 PRK11899 prephenate dehydratas 22.0 4.7E+02 0.01 28.2 9.0 65 615-680 194-259 (279)
179 PF08826 DMPK_coil: DMPK coile 21.9 1.7E+02 0.0038 24.6 4.5 27 539-565 33-59 (61)
180 TIGR02894 DNA_bind_RsfA transc 21.8 2.1E+02 0.0045 28.7 5.7 19 547-565 113-131 (161)
181 PF15030 DUF4527: Protein of u 21.6 1.1E+02 0.0024 32.4 4.0 49 511-564 15-70 (277)
182 PRK14127 cell division protein 21.4 2.4E+02 0.0052 26.5 5.8 38 539-576 31-68 (109)
183 smart00338 BRLZ basic region l 21.4 4.7E+02 0.01 21.5 8.0 58 511-574 5-62 (65)
184 PF05687 DUF822: Plant protein 21.1 92 0.002 30.6 3.1 27 502-528 11-37 (150)
185 PRK08526 threonine dehydratase 20.2 3.5E+02 0.0075 30.6 7.9 42 612-653 323-364 (403)
186 PRK00846 hypothetical protein; 20.1 6.1E+02 0.013 22.4 7.7 51 513-572 7-61 (77)
No 1
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal
Probab=100.00 E-value=9.1e-53 Score=408.57 Aligned_cols=163 Identities=55% Similarity=0.918 Sum_probs=150.7
Q ss_pred HHHHHHHHHcCCCCCeEEEEeeecccCCCCCeeEEEcccccCCCCCCCcccccccCcHHHHHHHHHHHHHhhhhccCCCC
Q 005651 69 LQQRLQQLIEGSREGWTYAIFWQSSCDYSGSSMLGWGDGYYKGEGEKGKSSKIKTSSAAEQEHRKKVLRELNSLISGSTS 148 (685)
Q Consensus 69 Lqq~L~~l~~~~~~~WtYAIFWq~s~~~~g~~vL~WgDGy~~g~~~~~~~~~~~~~~~~~q~~Rk~~LreL~sl~~g~~~ 148 (685)
|||+||.||+ +.+|+||||||+++++ .+|+||||||+|++++++.. ++++++|+++||+||++++
T Consensus 1 Lq~~Lr~lv~--~~~W~YaVFWk~~~~~---~~L~W~DG~~~g~~~~~~~~------~~~~~~~~~~l~~l~~~~~---- 65 (163)
T PF14215_consen 1 LQQRLRSLVE--NSQWTYAVFWKLSPDN---SVLVWGDGYCNGPKETRKNG------EEEQEQRSKVLRELHSSFS---- 65 (163)
T ss_pred ChHHHHHHhC--CCCCcEEEEeEEcCCC---CeeeEcceeecCCcccccch------hhccchhhhHHHHHhhhcc----
Confidence 7999999999 5599999999999984 49999999999998876543 2678899999999998886
Q ss_pred CCCCccccccccchHHHHhhhcceecccCCCCCCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeec
Q 005651 149 SPTDDAVDEEVTDTEWFFLISMTQSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPS 228 (685)
Q Consensus 149 ~~~~~~~~e~vtd~EwFyl~sm~~sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~ 228 (685)
..++.+++|+|+||||++||+|+| |+|+|||||++|+|+||++++.+..++|+|+++||++|||||||||+
T Consensus 66 --~~~~~~~~v~~~e~f~~~s~~~sf-------g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv 136 (163)
T PF14215_consen 66 --SYALSPEEVTDTEWFYLVSMSYSF-------GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPV 136 (163)
T ss_pred --ccccccchhHHHHHHhhceeeEEe-------cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEe
Confidence 245678999999999999998888 59999999999999999999999999999999999999999999999
Q ss_pred CCceEeeccccccccChHHHHHHHHhc
Q 005651 229 ANGVVELGSTEVIIQNSDLMNKVRFLF 255 (685)
Q Consensus 229 ~~GVvELGSt~~I~E~~~lv~~ik~~F 255 (685)
++||||||||++|+||++||++||++|
T Consensus 137 ~~GVvELGSt~~I~Ed~~~v~~vk~~F 163 (163)
T PF14215_consen 137 PNGVVELGSTEKIPEDSNLVQRVKSLF 163 (163)
T ss_pred cCCEEEeeeeeeeccCHHHHHHHHhhC
Confidence 999999999999999999999999998
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.25 E-value=8.4e-12 Score=101.09 Aligned_cols=52 Identities=38% Similarity=0.648 Sum_probs=49.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCC---CCcchhhHHHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVPNV---SKMDKASLLGDAISYINELRTKL 554 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP~~---sK~dKaSIL~dAI~YIk~Lq~kv 554 (685)
+..|+.+||+||++||..|..|+.+||.. .|+||++||..||+||+.|+.++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999997 89999999999999999999876
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.23 E-value=1.1e-11 Score=99.56 Aligned_cols=49 Identities=43% Similarity=0.729 Sum_probs=46.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCC-----CCcchhhHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINELR 551 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP~~-----sK~dKaSIL~dAI~YIk~Lq 551 (685)
+..|+..||+||++||+.|..|+.+||.. .|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 45899999999999999999999999985 78999999999999999997
No 4
>smart00353 HLH helix loop helix domain.
Probab=99.21 E-value=2.2e-11 Score=96.63 Aligned_cols=49 Identities=43% Similarity=0.668 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCC---CCCcchhhHHHHHHHHHHHHHHHHH
Q 005651 507 VEAERQRREKLNQRFYALRAVVPN---VSKMDKASLLGDAISYINELRTKLQ 555 (685)
Q Consensus 507 ~~aER~RRekLn~~f~~LRsLVP~---~sK~dKaSIL~dAI~YIk~Lq~kv~ 555 (685)
+.+||+||++||++|..|+++||. ..|++|++||.+||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999995 6799999999999999999999876
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.01 E-value=1.4e-09 Score=118.97 Aligned_cols=55 Identities=38% Similarity=0.606 Sum_probs=50.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCCCC----CCcchhhHHHHHHHHHHHHHHHHHH
Q 005651 502 EPLNHVEAERQRREKLNQRFYALRAVVPNV----SKMDKASLLGDAISYINELRTKLQS 556 (685)
Q Consensus 502 ~~~~H~~aER~RRekLn~~f~~LRsLVP~~----sK~dKaSIL~dAI~YIk~Lq~kv~e 556 (685)
+|.+|+++|||||++||+++..|..|||.+ .|..|.+||..+++||++||+..++
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999985 4667999999999999999997773
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.69 E-value=3e-08 Score=97.36 Aligned_cols=69 Identities=29% Similarity=0.542 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhcCCCC-------CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 504 LNHVEAERQRREKLNQRFYALRAVVPNV-------SKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVK 572 (685)
Q Consensus 504 ~~H~~aER~RRekLn~~f~~LRsLVP~~-------sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~ 572 (685)
..|..+||+||+.||..+..|..|||-+ -|..||.||.++|+||..|++++.+-+++...|++++..|+
T Consensus 64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~ 139 (229)
T KOG1319|consen 64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALK 139 (229)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999974 37789999999999999999999999999999998876554
No 7
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.68 E-value=9.8e-08 Score=98.16 Aligned_cols=78 Identities=28% Similarity=0.408 Sum_probs=65.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHhcCCCC--CCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005651 498 NGREEPLNHVEAERQRREKLNQRFYALRAVVPNV--SKM-DKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKE 574 (685)
Q Consensus 498 ~~~e~~~~H~~aER~RRekLn~~f~~LRsLVP~~--sK~-dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~ 574 (685)
++...|..|++.||+||..|+++|..|+.+||.. .+. +.++||..|.+||+.|+.+..+.+..+++|+.+-..++..
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~r 134 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKAR 134 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999999999999984 233 3689999999999999999888888888887766666555
Q ss_pred h
Q 005651 575 L 575 (685)
Q Consensus 575 ~ 575 (685)
+
T Consensus 135 l 135 (232)
T KOG2483|consen 135 L 135 (232)
T ss_pred H
Confidence 5
No 8
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.16 E-value=1.7e-05 Score=68.44 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=57.9
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEe--CCcccCH---HHHHHHHHHHhhc
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKM--GSRFYTQ---EQLKNVLAAKVGD 683 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKv--g~~~~t~---e~L~aaL~~~l~~ 683 (685)
+|+|.|+.++|+|.+|..+|-+++++|.+|.|++.++.+...|.|+- |....+. +.|+.+|..+|++
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999999999999999999975 4444443 5677788877764
No 9
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.05 E-value=2.7e-05 Score=66.92 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=58.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeCCcc-c---CHHHHHHHHHHHhhcC
Q 005651 616 AMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSV-VNDLMIQQATVKMGSRF-Y---TQEQLKNVLAAKVGDT 684 (685)
Q Consensus 616 a~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~-~~d~vl~ti~VKvg~~~-~---t~e~L~aaL~~~l~~~ 684 (685)
++|+|.|+.++|+|++|..+|..++|+|+.|.|++ .++.++.+|.|.-++.. . -.++|+.+|.++||++
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~~ 74 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGDS 74 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHchh
Confidence 47899999999999999999999999999999996 89999999999653322 2 2456888888888874
No 10
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.02 E-value=4.7e-06 Score=98.27 Aligned_cols=51 Identities=27% Similarity=0.425 Sum_probs=47.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCC----CCcchhhHHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVPNV----SKMDKASLLGDAISYINELRTK 553 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP~~----sK~dKaSIL~dAI~YIk~Lq~k 553 (685)
|.+|+.+|||||+|||..+.+|.+|||.+ -|+||.+||.+||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 44799999999999999999999999985 5999999999999999988874
No 11
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.01 E-value=4.8e-05 Score=65.19 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=56.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEe-CCcccCHHHHHHHHHHHhhcC
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKM-GSRFYTQEQLKNVLAAKVGDT 684 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKv-g~~~~t~e~L~aaL~~~l~~~ 684 (685)
+|+|.+++++|+|.+|.++|.++||+|+.|.|++.++.+..+|.|.- .+..++..+..+.|.++|.-+
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~~ 71 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGTS 71 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhccC
Confidence 79999999999999999999999999999999999999999999976 334454445555566666543
No 12
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.98 E-value=4.3e-06 Score=87.27 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=47.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhcCCC--------CCCcchhhHHHHHHHHHHHHHHHHHHH
Q 005651 504 LNHVEAERQRREKLNQRFYALRAVVPN--------VSKMDKASLLGDAISYINELRTKLQSA 557 (685)
Q Consensus 504 ~~H~~aER~RRekLn~~f~~LRsLVP~--------~sK~dKaSIL~dAI~YIk~Lq~kv~eL 557 (685)
.+|-+.|||||.+||+++..|+.|||. .+|++||-||.-|++|+++|++....-
T Consensus 34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~ 95 (250)
T KOG4304|consen 34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAA 95 (250)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence 456699999999999999999999996 278899999999999999999865543
No 13
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=0.00012 Score=63.18 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=54.9
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE--EeCCEEEEEEEEEeCCccc-C---HHHHHHHHHHHhh
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMS--VVNDLMIQQATVKMGSRFY-T---QEQLKNVLAAKVG 682 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS--~~~d~vl~ti~VKvg~~~~-t---~e~L~aaL~~~l~ 682 (685)
+|+|.|++++|+|.+|.++|.+++|+|..|.|+ +.++.++..|.|...+..+ + .+.|+++|.+++.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999 9999999999995533333 3 3456666666653
No 14
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.68 E-value=3.7e-05 Score=91.13 Aligned_cols=67 Identities=28% Similarity=0.494 Sum_probs=61.3
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHhcCCC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 499 GREEPLNHVEAERQRREKLNQRFYALRAVVPN-VSKMDKASLLGDAISYINELRTKLQSAESDKEDLQ 565 (685)
Q Consensus 499 ~~e~~~~H~~aER~RRekLn~~f~~LRsLVP~-~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~ 565 (685)
|.++|..||.+|||.|-.||+++..|+.+||. ..|..|.++|..||+||++|+...+.++.+...++
T Consensus 273 G~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 273 GGEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CCcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 35678999999999999999999999999998 48999999999999999999999998888877766
No 15
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.51 E-value=7.4e-05 Score=78.61 Aligned_cols=61 Identities=28% Similarity=0.481 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 506 HVEAERQRREKLNQRFYALRAVVPN--VSKMDKASLLGDAISYINELRTKLQSAESDKEDLQK 566 (685)
Q Consensus 506 H~~aER~RRekLn~~f~~LRsLVP~--~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~ 566 (685)
-|.-||+|=..||..|..||+|+|. .-|.+||.||..+.+||.+|+.+.-+|-.+.-+|++
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr 126 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELKR 126 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccchHHH
Confidence 4467999999999999999999997 689999999999999999999877666554444433
No 16
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.51 E-value=0.001 Score=56.26 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=51.2
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe-CCEEEEEEEEEeCC-cccCHHHHHHHHHHHhh
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV-NDLMIQQATVKMGS-RFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~-~d~vl~ti~VKvg~-~~~t~e~L~aaL~~~l~ 682 (685)
.|.|.|+.++|+|.+|..+|..++|+|+.|.+.+. ++.++..|.|.-++ .....++..+.|.+.|.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~ 70 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALE 70 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 57899999999999999999999999999999877 68999999996532 22333333344555543
No 17
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.0017 Score=55.40 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=53.0
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeC--Cc-ccC---HHHHHHHHHHHh
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMG--SR-FYT---QEQLKNVLAAKV 681 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg--~~-~~t---~e~L~aaL~~~l 681 (685)
+|+|.++.++|++.+|..+|..+++.|+.|.+.+.++.++.+|.|.-. +. ..+ .++|+++|.+.|
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999998642 22 223 345566665554
No 18
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.24 E-value=0.00069 Score=70.02 Aligned_cols=62 Identities=29% Similarity=0.434 Sum_probs=50.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhc-CCC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAV-VPN-VSKMDKASLLGDAISYINELRTKLQSAESDKEDL 564 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsL-VP~-~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L 564 (685)
|.--.+.||+|=.|+|+.|.+|+.- ++| ..+.-|..||..||+||..||.-++++-+....+
T Consensus 119 RKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 119 RKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 3334589999999999999999754 455 4677899999999999999999888886655444
No 19
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0032 Score=53.52 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=54.0
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeCCcccCHHHHHHHHHHHh
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSV-VNDLMIQQATVKMGSRFYTQEQLKNVLAAKV 681 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~-~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l 681 (685)
.|-|.|+.++|++++|..+|..++|+|+.|++.+ .++.++.+|.|.- ...-..+.|.++|.+++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRGETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCccchHHHHHHHHHhh
Confidence 4678899999999999999999999999999975 5789999999853 33446778888888876
No 20
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.14 E-value=0.0012 Score=57.98 Aligned_cols=51 Identities=24% Similarity=0.483 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCCC---CCcchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 515 EKLNQRFYALRAVVPNV---SKMDKAS---LLGDAISYINELRTKLQSAESDKEDLQ 565 (685)
Q Consensus 515 ekLn~~f~~LRsLVP~~---sK~dKaS---IL~dAI~YIk~Lq~kv~eLe~e~~~L~ 565 (685)
++|++.+..|+.|+|.. ...+|++ +|.+|+.||+.|++++..|.++..+|.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999984 2234444 999999999999999999998887774
No 21
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.13 E-value=0.0043 Score=51.16 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=52.3
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCC-cccCHHHHHHHHHHHhhc
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGS-RFYTQEQLKNVLAAKVGD 683 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~-~~~t~e~L~aaL~~~l~~ 683 (685)
+|.|.|+.++|++.+|+.+|.+++++|.++++.+.++.++..|.+.-.. ...+. +..+.|.++|.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~-~~~~~i~~~l~~ 68 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDP-ERQEALRAALGE 68 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCH-HHHHHHHHHHHh
Confidence 5889999999999999999999999999999999888889999987522 22444 344446666543
No 22
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.99 E-value=0.00064 Score=70.11 Aligned_cols=58 Identities=34% Similarity=0.442 Sum_probs=50.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCCC----CCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 005651 502 EPLNHVEAERQRREKLNQRFYALRAVVPN----VSKMDKASLLGDAISYINELRTKLQSAES 559 (685)
Q Consensus 502 ~~~~H~~aER~RRekLn~~f~~LRsLVP~----~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~ 559 (685)
.+..+++.||+|=+.+|..|..||.+||. .+|..|..+|.-||.||+.|+.-++.-+.
T Consensus 109 ~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 109 QRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 34567788999999999999999999997 36789999999999999999987766553
No 23
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.97 E-value=0.0071 Score=51.18 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=54.1
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCC-cccCHHHHHHHHHHHhhcC
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGS-RFYTQEQLKNVLAAKVGDT 684 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~-~~~t~e~L~aaL~~~l~~~ 684 (685)
.|.|.++.++|+|.+|..+|.+++++|+++.+.+.++.++.+|.|.-.+ ...+. +..++|.++||.+
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~-~~~~~l~~~l~~~ 70 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDP-KTIEAVRQEIGPA 70 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCH-HHHHHHHHHhccc
Confidence 5778899999999999999999999999999998888888888886422 22344 4556788888853
No 24
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.55 E-value=0.018 Score=49.20 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=56.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhhc
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGD 683 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~~ 683 (685)
.++|.+.+++++|++..|..+|.+.+.+|..++.++.++.+...+.|.+... +.++|+++|.+...+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~--~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPED--SLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHH--HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcc--cHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999988888887633 678888888876543
No 25
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.22 E-value=0.049 Score=44.34 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=49.5
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCC-cccCHHHHHHHHHHHhh
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGS-RFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~-~~~t~e~L~aaL~~~l~ 682 (685)
.|.|.|+.++|++.+|+.+|.++++.|.++.+.+.++.....|.+.-+. ...+. +-.+.|.++|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~l~ 67 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDP-ERIARLEEALE 67 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCH-HHHHHHHHHHH
Confidence 5789999999999999999999999999999988877777777776533 22343 33444555553
No 26
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.18 E-value=0.021 Score=69.85 Aligned_cols=70 Identities=10% Similarity=0.203 Sum_probs=58.3
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEe-CCcccC---HHHHHHHHHHHhh
Q 005651 613 GWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKM-GSRFYT---QEQLKNVLAAKVG 682 (685)
Q Consensus 613 g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKv-g~~~~t---~e~L~aaL~~~l~ 682 (685)
+.-.+|+|.|.+++|+|.+|.++|.+++|+|+.|.|++.++.+..+|.|.- .+..++ .+.|+++|..+|.
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALN 879 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999999999999999999999975 334455 3556666666654
No 27
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.02 E-value=0.062 Score=43.21 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=46.8
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCC---EEEEEEEEEeCCcccCHHHHHHHHHHHh
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVND---LMIQQATVKMGSRFYTQEQLKNVLAAKV 681 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d---~vl~ti~VKvg~~~~t~e~L~aaL~~~l 681 (685)
.|.|.|++++|.|.+|..+|.++++.|.++.+....+ .++-++.. ..-..+++.++|.+..
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV----DEEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE----EGHGHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC----CCCCHHHHHHHHHccc
Confidence 5889999999999999999999999999999999877 22222332 3345566777676543
No 28
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.02 E-value=0.063 Score=46.05 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=56.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 616 AMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 616 a~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
++|.+.|++++|+.++|-+.|-++|..|..++....++.++..+.+... ..+.++|+++|....+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~~~~~~l~~~l~~~~~ 66 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--WDAIAKLEAALPGLAR 66 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--cccHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999988887777765 2478888888776543
No 29
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.65 E-value=0.1 Score=44.35 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=55.4
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC------CEEEEEEEEEeCCcccCHHHHHHHHHHHhhc
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN------DLMIQQATVKMGSRFYTQEQLKNVLAAKVGD 683 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~------d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~~ 683 (685)
.|.|.|+.++|++.+|-+.|.+.+++|.+.+..+.+ +.+...+.+.++. ..+.++|+++|...-.+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDD 72 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999998887 6676777777763 56889999888775443
No 30
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.65 E-value=0.052 Score=47.48 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=57.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 616 AMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 616 a~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
++|.+.|++++|++++|.+.|-+.|++|.+.+..+.++.+...+.+..+....+.++|+.+|.+.-.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~ 68 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGK 68 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999998888888777887765335678899988776543
No 31
>PRK00194 hypothetical protein; Validated
Probab=95.43 E-value=0.081 Score=46.24 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=55.7
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHh
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKV 681 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l 681 (685)
.+.|.|.|++++|.+.+|.+.|-+.|++|.+.+..+.++.+...+.+..+....+.++|++.|.+.-
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998888888877777776543456788887776643
No 32
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.25 E-value=0.16 Score=42.81 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=50.2
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEE--eCCEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSV--VNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~--~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
+|.|.|+.++|++.+|.+.|-++|+.+.+.+..+ .++.+.-.+.+..+....+.++|+++|...-.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAA 68 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999998875 33343333444444334678999988877543
No 33
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.24 E-value=0.14 Score=43.52 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=56.9
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhhc
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGD 683 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~~ 683 (685)
+|.|.+++++|...+|-++|-++++++...+.++..+.+...+.+.++.. .+.++|+++|.....+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~-~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS-ADSEALLKDLLFKAHE 66 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC-CCHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999998999988877888877544 6789999988876544
No 34
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.18 E-value=0.074 Score=64.91 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=55.9
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeC-CcccCH---HHHHHHHHHHh
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMG-SRFYTQ---EQLKNVLAAKV 681 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg-~~~~t~---e~L~aaL~~~l 681 (685)
.-.+|+|.+.+++|+|.+|.++|.+++|+|+.|.|++.++.+..+|.|.-. +..++. ++|+++|..+|
T Consensus 782 ~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 447999999999999999999999999999999999999999999999763 233442 45555555544
No 35
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.70 E-value=0.17 Score=61.25 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=53.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCC-cccCHHHHHHHHHHHh
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGS-RFYTQEQLKNVLAAKV 681 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~-~~~t~e~L~aaL~~~l 681 (685)
-.+|.|.|..++|+|.+|..+|.+++++|+.|.|++.++.++.+|.|.-.+ ..++.+ .+.|.++|
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 479999999999999999999999999999999999999999999997633 333322 44555543
No 36
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.63 E-value=0.14 Score=62.83 Aligned_cols=70 Identities=10% Similarity=0.182 Sum_probs=58.4
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEe--CCcccC---HHHHHHHHHHHhhc
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKM--GSRFYT---QEQLKNVLAAKVGD 683 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKv--g~~~~t---~e~L~aaL~~~l~~ 683 (685)
+-..|.|.+..++|+|++|..+|..++|+|+.|.|++.++.++-+|.|.- |....+ .++|+++|.++|.+
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~ 887 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA 887 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 44689999999999999999999999999999999999999999999976 222233 35577778777743
No 37
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.62 E-value=0.21 Score=61.65 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=58.2
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEe--CCcccC---HHHHHHHHHHHhh
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKM--GSRFYT---QEQLKNVLAAKVG 682 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKv--g~~~~t---~e~L~aaL~~~l~ 682 (685)
.-..|.|.|.+++|+|.+|..+|.++||+|..|.|.+.++.++-+|.|.- |....+ .++|+++|.++|.
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 44689999999999999999999999999999999999999999999975 222233 3668888887774
No 38
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=94.30 E-value=0.61 Score=39.69 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=46.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeCCcccCHHHHHH
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV--NDLMIQQATVKMGSRFYTQEQLKN 675 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~--~d~vl~ti~VKvg~~~~t~e~L~a 675 (685)
.+-|+|.+.+++|+|.+|..+|.+.++.|.+.++... ++.+.-.|.+++. +.++|..
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~----d~~~L~~ 64 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK----DLEHLNQ 64 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES----SHHHHHH
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC----CHHHHHH
Confidence 4679999999999999999999999999999999884 6788888998875 3455555
No 39
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.19 E-value=0.24 Score=60.65 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=54.3
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccC---HHHHHHHHHHHh
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYT---QEQLKNVLAAKV 681 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t---~e~L~aaL~~~l 681 (685)
+-..|.|.|+.++|+|.+|..+|..++|+|+.|.|++.++.++-+|.|. +....+ .+.|+++|.++|
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~-~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID-GSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc-CCCCCCHHHHHHHHHHHHHHh
Confidence 4468999999999999999999999999999999999999999999993 323223 245555555544
No 40
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.18 E-value=0.23 Score=60.85 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=58.2
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCC-cccC---HHHHHHHHHHHhhc
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGS-RFYT---QEQLKNVLAAKVGD 683 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~-~~~t---~e~L~aaL~~~l~~ 683 (685)
+-..|.|.+..++|+|.+|-.+|..++|+|+.|.|++.++.++.+|.|.-.+ ...+ .++|+++|..+|.+
T Consensus 795 ~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~~ 868 (869)
T PRK04374 795 RRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLDP 868 (869)
T ss_pred CeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhcc
Confidence 4468999999999999999999999999999999999999999999997522 2222 36777777777643
No 41
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.80 E-value=0.32 Score=58.90 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=59.9
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCC-cccCHHHHHHHHHHHhhc
Q 005651 613 GWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGS-RFYTQEQLKNVLAAKVGD 683 (685)
Q Consensus 613 g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~-~~~t~e~L~aaL~~~l~~ 683 (685)
.+-+.|.|.|+.++|++++|..+|..+|++|+.|++.+.++.++.+|.|.-.. .....++|+++|.+++.+
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALDG 668 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHcC
Confidence 45678999999999999999999999999999999999999999999987522 223467888888887653
No 42
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.23 E-value=0.5 Score=38.11 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=42.3
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe-----CCEEEEEEEEEeCCcccCHHHHHHHHH
Q 005651 618 IRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV-----NDLMIQQATVKMGSRFYTQEQLKNVLA 678 (685)
Q Consensus 618 IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~-----~d~vl~ti~VKvg~~~~t~e~L~aaL~ 678 (685)
++|.++.++|.|.+|+++|.+.+++|........ .+...-.|++++.+ .-..+++..+|.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~l~~l~~~l~ 65 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG-AEHIEEIIAALR 65 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC-HHHHHHHHHHHH
Confidence 4678899999999999999999999998887654 35555556666532 112234444443
No 43
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=93.19 E-value=0.35 Score=59.09 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=55.5
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCC-cccC---HHHHHHHHHHHh
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGS-RFYT---QEQLKNVLAAKV 681 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~-~~~t---~e~L~aaL~~~l 681 (685)
.-.+|.|.|.+++|+|.+|.++|.+++++|.++.+++.++.+...|.+.... ...+ .+.|+++|..+|
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 3479999999999999999999999999999999999999999999997632 2333 355566665554
No 44
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.17 E-value=0.53 Score=57.89 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=56.1
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeCC-cccCH---HHHHHHHHHHhh
Q 005651 613 GWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN-DLMIQQATVKMGS-RFYTQ---EQLKNVLAAKVG 682 (685)
Q Consensus 613 g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~-d~vl~ti~VKvg~-~~~t~---e~L~aaL~~~l~ 682 (685)
++-..|.|.|++++|+|.+|..+|..++|+|+.|.|.+.. |.++.+|.|.-.+ ...+. ++|+++|.++|.
T Consensus 699 ~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~ 773 (884)
T PRK05007 699 RGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALT 773 (884)
T ss_pred CCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999999999999987765 5999999997522 22343 347777777764
No 45
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=93.08 E-value=0.081 Score=51.41 Aligned_cols=52 Identities=35% Similarity=0.444 Sum_probs=46.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCCC--CCCcchhhHHHHHHHHHHHHHHH
Q 005651 502 EPLNHVEAERQRREKLNQRFYALRAVVPN--VSKMDKASLLGDAISYINELRTK 553 (685)
Q Consensus 502 ~~~~H~~aER~RRekLn~~f~~LRsLVP~--~sK~dKaSIL~dAI~YIk~Lq~k 553 (685)
++.-|+..||||-..||+.|.+||.++|. +.|.+|.--|.-|..||-.|-+-
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhc
Confidence 46789999999999999999999999997 57788888899999999988653
No 46
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.29 Score=58.63 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=60.3
Q ss_pred cceEEEE--eCceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCC-cccCHHHHHHHHHHHh
Q 005651 605 LDIEVKI--IGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGS-RFYTQEQLKNVLAAKV 681 (685)
Q Consensus 605 ~eVeV~i--~g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~-~~~t~e~L~aaL~~~l 681 (685)
|.|.+.- ....-+|+|.+..++|+|++|-.+|.+++|+|+.|.|++.+.++..+|.|.... ..+ ..++++.|.+++
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l-~~~~~q~l~~~l 857 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQAL-NAELRQSLLQRL 857 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccC-CHHHHHHHHHHH
Confidence 4555532 234468999999999999999999999999999999999999999999997632 333 455666666555
Q ss_pred h
Q 005651 682 G 682 (685)
Q Consensus 682 ~ 682 (685)
.
T Consensus 858 l 858 (867)
T COG2844 858 L 858 (867)
T ss_pred H
Confidence 4
No 47
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=92.74 E-value=0.5 Score=57.78 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=56.9
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE-EeCCEEEEEEEEEeC--CcccC---HHHHHHHHHHHhhc
Q 005651 613 GWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMS-VVNDLMIQQATVKMG--SRFYT---QEQLKNVLAAKVGD 683 (685)
Q Consensus 613 g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS-~~~d~vl~ti~VKvg--~~~~t---~e~L~aaL~~~l~~ 683 (685)
.+-..|.|.+++++|+|.+|..+|..++|+|+.|.|. +.++.++.+|.|+-. ....+ .+.|+.+|.++|..
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 3456899999999999999999999999999999998 778999999999863 22223 33466677776643
No 48
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=92.63 E-value=0.68 Score=56.75 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=56.1
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeC-CcccCHH---HHHHHHHHHhh
Q 005651 613 GWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSV-VNDLMIQQATVKMG-SRFYTQE---QLKNVLAAKVG 682 (685)
Q Consensus 613 g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~-~~d~vl~ti~VKvg-~~~~t~e---~L~aaL~~~l~ 682 (685)
.+-..|.|.|+.++|+|++|..+|..++|+|+.|.|.+ .++.++.+|.|.-. +..++.+ .|+.+|.++|.
T Consensus 675 ~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~ 749 (854)
T PRK01759 675 RGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALN 749 (854)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35568999999999999999999999999999999977 88999999999652 2223433 46666666654
No 49
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=92.26 E-value=0.12 Score=58.96 Aligned_cols=38 Identities=34% Similarity=0.634 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhcCCC----CCCcchhhHHHHHHHHHH
Q 005651 511 RQRREKLNQRFYALRAVVPN----VSKMDKASLLGDAISYIN 548 (685)
Q Consensus 511 R~RRekLn~~f~~LRsLVP~----~sK~dKaSIL~dAI~YIk 548 (685)
+|-|++||.-+..|.+|+|. ++|.||.|||.=++.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 45579999999999999998 699999999999999986
No 50
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.22 E-value=1.6 Score=36.22 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=40.4
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeC
Q 005651 618 IRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN-DLMIQQATVKMG 664 (685)
Q Consensus 618 IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~-d~vl~ti~VKvg 664 (685)
|+|.+..++|.|.+|+.+|.+.+..|.+.++.... +.....|++++.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~ 49 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP 49 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC
Confidence 78899999999999999999999999999987764 666667887764
No 51
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=92.20 E-value=0.1 Score=58.75 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=45.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCCCCC----CcchhhHHHHHHHHHHHHHHHHHHH
Q 005651 502 EPLNHVEAERQRREKLNQRFYALRAVVPNVS----KMDKASLLGDAISYINELRTKLQSA 557 (685)
Q Consensus 502 ~~~~H~~aER~RRekLn~~f~~LRsLVP~~s----K~dKaSIL~dAI~YIk~Lq~kv~eL 557 (685)
.|+-.+..||-|=..||+.|.+|..+.=--. -..|..||..|+..|-.|+++|.|-
T Consensus 526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 4567778888888899999999998864322 2357889999999999999998763
No 52
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.56 E-value=0.82 Score=38.00 Aligned_cols=62 Identities=6% Similarity=0.060 Sum_probs=44.5
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe-CCEEEEEEEEEeCCcccCHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV-NDLMIQQATVKMGSRFYTQEQLKNVLA 678 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~-~d~vl~ti~VKvg~~~~t~e~L~aaL~ 678 (685)
.|+|.++.++|.+.+|++.|.+.+++|...+.+.. ++..-..|++.+.+.....++|..+|.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHh
Confidence 57889999999999999999999999999887553 355556677766433223344444443
No 53
>PRK03059 PII uridylyl-transferase; Provisional
Probab=91.42 E-value=0.9 Score=55.71 Aligned_cols=70 Identities=9% Similarity=0.080 Sum_probs=56.1
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEE-EEeCCEEEEEEEEEeCCccc-C---HHHHHHHHHHHhh
Q 005651 613 GWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASM-SVVNDLMIQQATVKMGSRFY-T---QEQLKNVLAAKVG 682 (685)
Q Consensus 613 g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~Asv-S~~~d~vl~ti~VKvg~~~~-t---~e~L~aaL~~~l~ 682 (685)
.+...|-|.|+.++|++++|..+|..++|+|+.|.| ++.+|.++.+|.|.-.+... . .++|+++|.++|.
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLA 750 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHc
Confidence 356789999999999999999999999999999999 56788999999996532222 2 4556666766664
No 54
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=90.80 E-value=1.3 Score=32.26 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=31.3
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC
Q 005651 618 IRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN 652 (685)
Q Consensus 618 IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~ 652 (685)
|+|.|+..++.+.+|++.|...++.|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 57889999999999999999999999999887654
No 55
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=90.63 E-value=1.6 Score=46.82 Aligned_cols=63 Identities=3% Similarity=0.050 Sum_probs=54.0
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN--DLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~--d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
.|.|.|++++|..++|-+.|-+.++.|++++.+... +.++..+.+.+.....+.++|+++|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999999988854 777777777665445788999998887
No 56
>PRK04435 hypothetical protein; Provisional
Probab=90.59 E-value=1.3 Score=42.86 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=54.2
Q ss_pred EeCceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe-CCEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 611 IIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV-NDLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 611 i~g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~-~d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
..|..+.|.+.+..++|.|.+|++.|.+.+++|...+.+.. ++...-+|++.+.+.....++|.++|.+
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHc
Confidence 56788999999999999999999999999999998887553 5666677888775544455566655543
No 57
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=90.47 E-value=1.5 Score=33.85 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=38.1
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeC
Q 005651 618 IRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN-DLMIQQATVKMG 664 (685)
Q Consensus 618 IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~-d~vl~ti~VKvg 664 (685)
|+|.|.++++.+.+|++.|.+.++++....+...+ +.....|++++.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR 48 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC
Confidence 57889999999999999999999999999887665 545455666554
No 58
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=90.20 E-value=1.3 Score=54.68 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=55.2
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEE-EEeCCEEEEEEEEEeC--Cccc-C---HHHHHHHHHHHhh
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASM-SVVNDLMIQQATVKMG--SRFY-T---QEQLKNVLAAKVG 682 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~Asv-S~~~d~vl~ti~VKvg--~~~~-t---~e~L~aaL~~~l~ 682 (685)
+-..|.|.|+.++|++++|..+|..++|+|+.|.| ++.+|.++.+|.|.-. .... . .++|+++|.++|.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~ 778 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALR 778 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999999999998 5667899999999652 2212 2 3447777777764
No 59
>PRK05092 PII uridylyl-transferase; Provisional
Probab=89.15 E-value=1.8 Score=53.67 Aligned_cols=68 Identities=4% Similarity=-0.013 Sum_probs=55.0
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeCCc--ccC---HHHHHHHHHHHh
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSV-VNDLMIQQATVKMGSR--FYT---QEQLKNVLAAKV 681 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~-~~d~vl~ti~VKvg~~--~~t---~e~L~aaL~~~l 681 (685)
+...|.|.|+.++|++.+|..+|..++++|+.|.|.+ .+++++.+|.|.-.+. ... .+.|+.+|.+.+
T Consensus 731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 731 GVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999977 6788899999875222 122 455677776666
No 60
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.13 E-value=2 Score=36.27 Aligned_cols=63 Identities=21% Similarity=0.121 Sum_probs=49.5
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEe--CCcccCHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKM--GSRFYTQEQLKNVLAA 679 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKv--g~~~~t~e~L~aaL~~ 679 (685)
+|.|.||.+.|+-.+|...+-+.||.|+...+++.+.-.+-.|-|.- ..-...=+-|+..|++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~ 66 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMS 66 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHh
Confidence 68999999999999999999999999999999999886555555532 2223555666766654
No 61
>PRK04374 PII uridylyl-transferase; Provisional
Probab=88.79 E-value=1.9 Score=53.01 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=56.5
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeCCc--ccCHHHHHHHHHHHhhc
Q 005651 613 GWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSV-VNDLMIQQATVKMGSR--FYTQEQLKNVLAAKVGD 683 (685)
Q Consensus 613 g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~-~~d~vl~ti~VKvg~~--~~t~e~L~aaL~~~l~~ 683 (685)
.+-..|-|.|+.++|++++|..+|..++|+|+.|.|.+ .+|.++.+|.|.-.+. .-..++|+++|.++|.+
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~ 761 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAG 761 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcC
Confidence 35568999999999999999999999999999999976 6889999999965222 22345567777666643
No 62
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=88.59 E-value=3 Score=44.77 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=56.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEE--eCCEEEEEEEEEeCCcccCHHHHHHHHHHHhhc
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSV--VNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGD 683 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~--~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~~ 683 (685)
.+.|.|.|++++|+...|-++|-++|+.|.+.+.++ .++.+.-.+.+.......+.++|+++|.+.-.+
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEE 76 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999 888766666666522334688999888765443
No 63
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=87.94 E-value=3.3 Score=33.12 Aligned_cols=47 Identities=2% Similarity=0.036 Sum_probs=38.5
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEe
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV--NDLMIQQATVKM 663 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~--~d~vl~ti~VKv 663 (685)
+|+|.+.+++|.+.+|+..|.+.++.+...+.... ++.....|.+++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 57888999999999999999999999999887664 455556666654
No 64
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.71 E-value=3.8 Score=32.95 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=41.3
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeCCcccCHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN-DLMIQQATVKMGSRFYTQEQLKNVLA 678 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~-d~vl~ti~VKvg~~~~t~e~L~aaL~ 678 (685)
.|+|.++.++|.+.+|++.|.+.++.|...+....+ +..... +.+.+. ...+++.++|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~--i~~~~~-~~~~~~~~~L~ 61 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIY--MELEGV-GDIEELVEELR 61 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEE--EEEecc-ccHHHHHHHHh
Confidence 478899999999999999999999999988876653 343333 444322 34445555444
No 65
>PRK08577 hypothetical protein; Provisional
Probab=87.50 E-value=4.6 Score=38.35 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=48.9
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV--NDLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~--~d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
.+.|+|.+.+++|.|.+|++.|.+.++++...+.... ++...-.+++.+.+.....+++.+.|.+
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~ 122 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKK 122 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHc
Confidence 5789999999999999999999999999998877664 3455555777775432345666666544
No 66
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=87.47 E-value=0.19 Score=58.70 Aligned_cols=74 Identities=23% Similarity=0.443 Sum_probs=64.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCCCC-----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 502 EPLNHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 502 ~~~~H~~aER~RRekLn~~f~~LRsLVP~~-----sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
.++.|+.+|.+||+.++-.|..|.+++-+. .|+.++.-+..++.||..++.+...+.++-..|++++++++.-+
T Consensus 651 r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A~~ 729 (856)
T KOG3582|consen 651 RPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNAVI 729 (856)
T ss_pred CcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHHHH
Confidence 568999999999999999999999999773 57777777999999999999999999999988988887776554
No 67
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.21 E-value=4.1 Score=33.44 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=42.9
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV--NDLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~--~d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
.|++..++++|.+.+|++.|.+.++.|.+...... .+.....|.+.. .+.++++++|.++
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~----~~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT----MNPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec----CCHHHHHHHHHHC
Confidence 57788899999999999999999999997765443 234444455433 2345777777653
No 68
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.07 E-value=4.5 Score=32.96 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=41.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeCCcccCHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN--DLMIQQATVKMGSRFYTQEQLKNVL 677 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~--d~vl~ti~VKvg~~~~t~e~L~aaL 677 (685)
+|+|.+.+++|.+.+|+..|.+.++.+...+..... +...-.++++. .+.+++.+.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~i 60 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE----TSEAALNAAL 60 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc----CCHHHHHHHH
Confidence 689999999999999999999999999988876542 44433444432 2455555544
No 69
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=86.66 E-value=3.5 Score=34.60 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=43.5
Q ss_pred EEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCC-EEEEEEEEEeCC--cccCHHHHHHHHHH
Q 005651 619 RIQSSKKNHPAAKLMQALKELDLEVNHASMSVVND-LMIQQATVKMGS--RFYTQEQLKNVLAA 679 (685)
Q Consensus 619 rI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d-~vl~ti~VKvg~--~~~t~e~L~aaL~~ 679 (685)
-+..++++|.|.+|++.|++.++.+.+.......+ .--+.|.+.+.. .....+++...|.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34556799999999999999999999997776655 555777777743 23334445555544
No 70
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=86.38 E-value=3.5 Score=32.80 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=44.6
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 618 IRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN--DLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 618 IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~--d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
+.|.+..++|.+.+|++.|.+.++.|.+..+.... +.....|.+ .+. ..++|.+.|.+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~~--~~~~l~~~l~~~ 62 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DSP--VPEEVLEELKAL 62 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CCC--CCHHHHHHHHcC
Confidence 67888999999999999999999999999987754 565555655 222 345666666543
No 71
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.26 E-value=3.8 Score=32.79 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=41.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV--NDLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~--~d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
+|++.+.+++|.+.+|+..|.+.++.+........ ++..... +++.+. ..+++.++|.+
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~--~~~~~i~~l~~ 61 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP--IDEEVIEEIKK 61 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC--CCHHHHHHHHc
Confidence 46888999999999999999999999998887652 3443333 344333 44566655553
No 72
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.14 E-value=3.6 Score=33.70 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=42.4
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC-C-EEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN-D-LMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~-d-~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
-++|.++.++|.|.+|++.|.+.++.|......... + .....|.++.. . ..+.+++.|.+
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~--~-~~~~~~~~L~~ 64 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ--E-DRERAKEILKE 64 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH--H-HHHHHHHHHHH
Confidence 478889999999999999999999999988765542 2 22234555422 1 45666666654
No 73
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.06 E-value=3.2 Score=33.18 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=40.7
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 618 IRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN--DLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 618 IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~--d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
|.|.-+.++|.|.+|++.|.+.++.|.+....... +.... .+++.+ .+++++.|.++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v--~~~ve~----~~~~~~~L~~~ 60 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALL--IFRTED----IEKAIEVLQER 60 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEE--EEEeCC----HHHHHHHHHHC
Confidence 66777899999999999999999999877665443 34333 344433 66777766553
No 74
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=85.99 E-value=6.1 Score=33.68 Aligned_cols=61 Identities=8% Similarity=0.073 Sum_probs=43.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeCCcccCHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN-DLMIQQATVKMGSRFYTQEQLKNVLA 678 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~-d~vl~ti~VKvg~~~~t~e~L~aaL~ 678 (685)
.|.+..+.++|.|++|++.|.++++.+++....... +...+.|.|.+... ...+.+..+|.
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~-~~~~~~~~~l~ 64 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH-IEDPNVAEALE 64 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC-CCCHHHHHHHH
Confidence 345555678999999999999999999998766553 35567777776432 34556655553
No 75
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=85.03 E-value=0.83 Score=50.76 Aligned_cols=42 Identities=43% Similarity=0.644 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCCcchhhHHHHHHHHHHH
Q 005651 508 EAERQRREKLNQRFYALRAVVPN----VSKMDKASLLGDAISYINE 549 (685)
Q Consensus 508 ~aER~RRekLn~~f~~LRsLVP~----~sK~dKaSIL~dAI~YIk~ 549 (685)
-+-|+||+|-|.-|+.|..++|- .+..||++|+.-|..|||.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 45699999999999999999996 3678999999999999983
No 76
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=84.40 E-value=6 Score=33.28 Aligned_cols=37 Identities=8% Similarity=0.156 Sum_probs=33.3
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDL 654 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~ 654 (685)
.|+|.|.++.|++.+|+.+|.+.++.+...++... +.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 47899999999999999999999999999998765 44
No 77
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=83.45 E-value=7.8 Score=31.79 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=42.2
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
.|.|..++++|.|.+|++.|.+.++.|...-+...++. -.++++.. +.+.+++.|.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~----~~~~~~~~L~~ 59 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVS----DPDKAKEALKE 59 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEEC----CHHHHHHHHHH
Confidence 36677889999999999999999999998887766663 33444332 25677766654
No 78
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=82.91 E-value=5.3 Score=43.09 Aligned_cols=68 Identities=4% Similarity=0.004 Sum_probs=50.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE--EeCCEEEEEEEEEe-CCcccCHHHHHHHHHHHhh
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMS--VVNDLMIQQATVKM-GSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS--~~~d~vl~ti~VKv-g~~~~t~e~L~aaL~~~l~ 682 (685)
.++|.|.|++++|+.++|-+.|-+.++.|++++-. +..+.++..+.+.. .....+.++|+++|...-.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~ 79 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAE 79 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999985 23333333333322 2235788999988877543
No 79
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=81.95 E-value=8.2 Score=41.55 Aligned_cols=68 Identities=7% Similarity=0.004 Sum_probs=52.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeCCcccCHHHHHHHHHHHhhc
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV--NDLMIQQATVKMGSRFYTQEQLKNVLAAKVGD 683 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~--~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~~ 683 (685)
.+.|.|.|++++|...+|-+.|-+++++|.+.+..+. ++.+...+.+..+ ...+.++|+++|...-.+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EGLDEDALRAGFAPIAAR 76 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999998743 3344434444433 346789999988876443
No 80
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.74 E-value=7.8 Score=32.25 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=41.4
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe---CCEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 618 IRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV---NDLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 618 IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~---~d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
++|.-+.++|.|.+|++.|.+.|+.|++...... .+.-...+++.+.... ..+.|.++|.++
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~-~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS-KENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch-HHHHHHHHHhCc
Confidence 4566789999999999999999999998877665 2233334444431111 255666666543
No 81
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=80.80 E-value=1.2 Score=47.03 Aligned_cols=50 Identities=36% Similarity=0.463 Sum_probs=43.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCC---CCCcchhhHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVPN---VSKMDKASLLGDAISYINELRT 552 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP~---~sK~dKaSIL~dAI~YIk~Lq~ 552 (685)
|+.=+..||+|=-.||+.|..||.++|. ..|+.|.-.|.-|-+||..|++
T Consensus 73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 4556678999989999999999999995 5788899999999999998875
No 82
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=80.50 E-value=9.9 Score=29.90 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=37.1
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEE
Q 005651 618 IRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN-DLMIQQATVK 662 (685)
Q Consensus 618 IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~-d~vl~ti~VK 662 (685)
|.|..+.++|.+.+|.+.|.+.++.|....+...+ +..+..|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 45778899999999999999999999988877765 6666666654
No 83
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=80.46 E-value=1.6 Score=39.71 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=37.8
Q ss_pred CcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeec--CC---ceEeeccccccccChHHH
Q 005651 184 GLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPS--AN---GVVELGSTEVIIQNSDLM 248 (685)
Q Consensus 184 GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~--~~---GVvELGSt~~I~E~~~lv 248 (685)
|+.+.++.+++++|+. . ......+...+...||+.++|||+ .+ |||.|++.+.-.=+.+-+
T Consensus 68 ~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~ 133 (148)
T PF13185_consen 68 GLWEGVLRTGEPIIIN--D--DDSSFPPWELARHPGIRSILCVPLRSGGEVIGVLSLYSKEPNAFSEEDL 133 (148)
T ss_dssp ETTSHHHHHTS-EEES--C--CCGGGSTTHHHCCTT-SEEEEEEEEETTEEEEEEEEEESSTT---HHHH
T ss_pred hHHHHHHhcCceEEEe--C--ccccccchhhhccccCCEEEEEEEeECCEEEEEEEEeeCCCCCcCHHHH
Confidence 4555568899999999 1 111122246667789999999994 33 899999977643333333
No 84
>PRK07334 threonine dehydratase; Provisional
Probab=79.52 E-value=12 Score=41.77 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=44.1
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe-----CCEEEEEEEEEeC
Q 005651 613 GWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV-----NDLMIQQATVKMG 664 (685)
Q Consensus 613 g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~-----~d~vl~ti~VKvg 664 (685)
|-.+.|+|.+.+++|+|.+|++.|.+.++.|.+.++... ++.+...|++++.
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~ 380 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR 380 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC
Confidence 445899999999999999999999999999999998764 5666667777665
No 85
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=78.39 E-value=21 Score=30.60 Aligned_cols=73 Identities=18% Similarity=0.316 Sum_probs=43.9
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecC-C----ceEeeccccc----cccChHHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSA-N----GVVELGSTEV----IIQNSDLMNKV 251 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~-~----GVvELGSt~~----I~E~~~lv~~i 251 (685)
.+.++.++++.++.++.+.+..... .+.........|++.++|+|+. . |+|.+.+.+. -.++.++++.+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~Pl~~~~~~~G~l~~~~~~~~~~~~~~~~~~l~~~ 131 (149)
T smart00065 54 LGEGLAGRVAETGRPLNIPDVEADP--VFALDLLGRYQGVRSFLAVPLVADGELVGVLALHNKDSPRPFTEEDEELLQAL 131 (149)
T ss_pred CCCChHHHHHHcCCeEEeechhhCC--ccccccccceeceeeEEEeeeeecCEEEEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4446677777778887777544322 2333344444569999999953 2 7888887621 23344555555
Q ss_pred HHhc
Q 005651 252 RFLF 255 (685)
Q Consensus 252 k~~F 255 (685)
-..+
T Consensus 132 ~~~i 135 (149)
T smart00065 132 ANQL 135 (149)
T ss_pred HHHH
Confidence 5444
No 86
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.23 E-value=8.9 Score=46.61 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=54.1
Q ss_pred eEEEEeCceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeCCcccCHHHHHHHH
Q 005651 607 IEVKIIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSV-VNDLMIQQATVKMGSRFYTQEQLKNVL 677 (685)
Q Consensus 607 VeV~i~g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~-~~d~vl~ti~VKvg~~~~t~e~L~aaL 677 (685)
+.++...+..-|-|.|+.++.+++.|..++...|++|+.|+|.+ .+|..+.+|.|.-.++..-.++.+.++
T Consensus 676 ~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~ 747 (867)
T COG2844 676 ISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAAL 747 (867)
T ss_pred eeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHH
Confidence 34455556778999999999999999999999999999999955 577899999987533322224444433
No 87
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=74.34 E-value=3.9 Score=47.26 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=51.1
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeeccccc----cccChHHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEV----IIQNSDLMNKV 251 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~----I~E~~~lv~~i 251 (685)
.|+|+.|+|+.+++++++.+...-... -.+.. ....|++.++|||+.. |||.+.+... -.+|.+|+..+
T Consensus 71 ~~~gi~g~v~~~~~pvii~Dv~~d~~~-~~~~~-~~~~~~~S~l~VPL~~~g~viGvL~v~s~~~~~~ft~~d~~lL~~l 148 (534)
T TIGR01817 71 VGEGAIGQIVATGNSLVVPDVAAEPLF-LDRLS-LYDPGPVPFIGVPIKADSETIGVLAADRDFRSRERLEEEVRFLEMV 148 (534)
T ss_pred CCccHHHHHHhcCCeEEecccccCchh-hhccc-cccCCcceEEEEEEcCCCEEEEEEEEEeccccccccHHHHHHHHHH
Confidence 889999999999999999976532111 01111 2346899999999633 8999998753 34566677666
Q ss_pred HHhcc
Q 005651 252 RFLFN 256 (685)
Q Consensus 252 k~~F~ 256 (685)
-....
T Consensus 149 A~~ia 153 (534)
T TIGR01817 149 ANLIG 153 (534)
T ss_pred HHHHH
Confidence 55543
No 88
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=74.27 E-value=5.6 Score=35.87 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=58.1
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
.++|.|.-..++|..+.|..+|-+++++++..+=+...+++-..+.|..+....+-..|+..|.....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHHHH
Confidence 36788888899999999999999999999999999999988888888777777787888877766543
No 89
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=74.05 E-value=11 Score=37.24 Aligned_cols=62 Identities=10% Similarity=0.089 Sum_probs=46.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN--DLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~--d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
.|.|.-++++|.|.+|...|...|+.+.+..+...+ +....+|++.. .....++|..-|.+.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--d~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--DDKVLEQITKQLNKL 66 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--CHHHHHHHHHHHhcC
Confidence 477788899999999999999999999999988876 34444555542 344566776666654
No 90
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=73.44 E-value=5.3 Score=42.15 Aligned_cols=50 Identities=38% Similarity=0.408 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCC---CCcchhhHHHHHHHHHHHHHHHH
Q 005651 505 NHVEAERQRREKLNQRFYALRAVVPNV---SKMDKASLLGDAISYINELRTKL 554 (685)
Q Consensus 505 ~H~~aER~RRekLn~~f~~LRsLVP~~---sK~dKaSIL~dAI~YIk~Lq~kv 554 (685)
.-+..||+|=.-||..|..||.+||.. .|.+|-..|..|-.||--|-..+
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 345789999999999999999999984 67788889999999998876654
No 91
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=72.67 E-value=2.9 Score=49.54 Aligned_cols=41 Identities=44% Similarity=0.710 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCCcchhhHHHHHHHHHH
Q 005651 508 EAERQRREKLNQRFYALRAVVPN----VSKMDKASLLGDAISYIN 548 (685)
Q Consensus 508 ~aER~RRekLn~~f~~LRsLVP~----~sK~dKaSIL~dAI~YIk 548 (685)
-|-|-||-|=|+-|+.|..+||- .+..|||||+.=||.|++
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 46688999999999999999995 377899999999999998
No 92
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=72.02 E-value=19 Score=38.66 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=53.7
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV--NDLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~--~d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
..+.+.|+|+.++|+.+.|-.-|-+.|..|++++-... .++++.-+....++...+.+.|++++..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHH
Confidence 35689999999999999999999999999999987632 3566666666555555889999998877
No 93
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=70.89 E-value=22 Score=30.18 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=42.0
Q ss_pred EEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCC-EEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 619 RIQSSKKNHPAAKLMQALKELDLEVNHASMSVVND-LMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 619 rI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d-~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
-+..++++|.|.+||+.|...++.+++...-...+ ..-|.|.+.+.. ..+.++++|.+
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~---~~~~~~~~l~~ 62 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV---DRGDLDQLISS 62 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc---ChHHHHHHHHH
Confidence 34446789999999999999999999998877654 345677777743 33445555543
No 94
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=70.13 E-value=9.4 Score=31.76 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeCCcccCHHHHHHHHHHHh
Q 005651 624 KKNHPAAKLMQALKELDLEVNHASMSVVN--DLMIQQATVKMGSRFYTQEQLKNVLAAKV 681 (685)
Q Consensus 624 ~~~glL~~Im~ALeeL~LdV~~AsvS~~~--d~vl~ti~VKvg~~~~t~e~L~aaL~~~l 681 (685)
+++|.|.||+..|.-.|+.|.+.++...+ +..-.+++++ +.....++|..-|.+.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~--~~~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS--GDDREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE--S-CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe--eCchhHHHHHHHHhccC
Confidence 36899999999999999999999999954 4444445443 33446677777666543
No 95
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=69.71 E-value=16 Score=36.33 Aligned_cols=62 Identities=6% Similarity=0.053 Sum_probs=45.3
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN--DLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~--d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
.|.|.-++++|.|.+|...|...|+.+.+..+.... +....+|++. ......++|..-|.+.
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~~~~~i~qi~kQl~KL 67 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--GDEQVIEQITKQLNKL 67 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--CCHHHHHHHHHHHhcc
Confidence 577888899999999999999999999999887765 3444445543 3344456666555553
No 96
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.99 E-value=33 Score=30.72 Aligned_cols=61 Identities=10% Similarity=0.123 Sum_probs=43.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCC-EEEEEEEEEeCCcccCHHHHHHHHH
Q 005651 616 AMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVND-LMIQQATVKMGSRFYTQEQLKNVLA 678 (685)
Q Consensus 616 a~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d-~vl~ti~VKvg~~~~t~e~L~aaL~ 678 (685)
.-|-+..+.++|.|.++|..|.+.++.+++...-...+ .--|.|-|.+... . .+.++.+|.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~-~~~~~~~l~ 76 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S-APALDPIIK 76 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C-CHHHHHHHH
Confidence 34555557889999999999999999999998766543 3446777777333 1 345544443
No 97
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=67.39 E-value=14 Score=37.47 Aligned_cols=65 Identities=5% Similarity=0.057 Sum_probs=52.5
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
..++|.+.+++|+|++.+|-++|-+++..+..++.+..++.+--.+.|.... ...++|+.+|...
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~--~~~~~le~~L~~l 71 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW--NAITLIESTLPLK 71 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh--hHHHHHHHHHHhh
Confidence 4578999999999999999999999999999999999999765555553322 2667777776554
No 98
>smart00338 BRLZ basic region leucin zipper.
Probab=66.42 E-value=13 Score=30.87 Aligned_cols=32 Identities=34% Similarity=0.583 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 544 ISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 544 I~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
-.||..|+.+++.|+.+...|..++..+..++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999888887776654
No 99
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=65.88 E-value=7.1 Score=31.67 Aligned_cols=56 Identities=9% Similarity=0.076 Sum_probs=39.5
Q ss_pred EEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHH
Q 005651 619 RIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLA 678 (685)
Q Consensus 619 rI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~ 678 (685)
-+.+..++|.+.+|+..|.+.++.+...+....++..+..+.+.+. ..+++.+.|.
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~----~l~~li~~l~ 58 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE----VSEELLEALR 58 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC----CCHHHHHHHH
Confidence 4577889999999999999999999777665545665555655433 3345555554
No 100
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=65.80 E-value=15 Score=29.90 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=41.7
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 618 IRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV--NDLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 618 IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~--~d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
+-+..+.++|.+.+|.+.|.+.++.+.+..+... ++..+..|.++.. ..+++.++|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~----~~~~~~~~l~~ 61 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP----VPDEVLEELRA 61 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC----CCHHHHHHHHc
Confidence 4567889999999999999999999988876553 4666666665431 23466555554
No 101
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=64.98 E-value=21 Score=31.13 Aligned_cols=61 Identities=5% Similarity=-0.032 Sum_probs=43.4
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEE--EEEEEEeCCcccCHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMI--QQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl--~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
.|.+.-.+++|.|.+|...|.-.|+.|.+.++...++.=+ .+|++. + .....++|..-|.+
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~-~~~~i~qi~kQL~K 66 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-C-TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-C-CHHHHHHHHHHHhC
Confidence 5777888999999999999999999999999887664333 344442 3 23344555555544
No 102
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=64.40 E-value=11 Score=45.72 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=41.8
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeecccccc
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEVI 241 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~I 241 (685)
.|+|+.|+++.+|.++++.+...-... ..+.. +.-.+++.++|||+.. |||.+.+...-
T Consensus 70 ~geGi~G~Va~tg~pV~V~Dv~~dprf-~~~~~-~~~~~~~S~L~VPL~~~geVIGVL~v~~~~~~ 133 (748)
T PRK11061 70 FDEGIVGLVGRLAEPINLADAQKHPSF-KYIPS-VKEERFRAFLGVPIIYRRQLLGVLVVQQRELR 133 (748)
T ss_pred CCcchHHHHhccCceEEECCcccCccc-ccCcc-ccCccceEEEEEEEeeCCEEEEEEEEeeCCCC
Confidence 899999999999999999876542211 11111 2246899999999655 78887766643
No 103
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=62.83 E-value=35 Score=44.76 Aligned_cols=69 Identities=10% Similarity=0.157 Sum_probs=55.2
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC-----CEEEEEEEEEeC-CcccCHHHHHHHHHHHhh
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN-----DLMIQQATVKMG-SRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~-----d~vl~ti~VKvg-~~~~t~e~L~aaL~~~l~ 682 (685)
+.+.++|.....+.+|++||-.|+++||.|+...-..+. ...||.|.++.. ....+.++++..|.+++.
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~ 562 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFE 562 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHH
Confidence 457899999999999999999999999999987543322 368899999884 344778888888877765
No 104
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=62.81 E-value=39 Score=29.51 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=46.0
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN--DLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~--d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
.|.|.-.+++|.|.+|+..+.-.|+.|.+.++.... +..--++++ + .....++|..-|.+.
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~-~~~~i~ql~kQL~KL 67 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--A-SERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--C-CCchHHHHHHHHhcC
Confidence 467777899999999999999999999999998854 444445555 3 455667777666554
No 105
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=61.21 E-value=19 Score=29.74 Aligned_cols=32 Identities=47% Similarity=0.741 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 544 ISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 544 I~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
..||.+|+.++..|+.+...|..++..+..++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888887776665543
No 106
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.96 E-value=62 Score=28.11 Aligned_cols=63 Identities=8% Similarity=0.067 Sum_probs=38.4
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN-DLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~-d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
+.+++|.-+.++|-|.+++++|- +.+|......... +..--.+.+++.+..-..+++..+|.+
T Consensus 1 e~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 1 EALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred CeEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 35789999999999999999998 5555555444432 222223444543312334555555543
No 107
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.16 E-value=31 Score=29.90 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQKELASVK 572 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~ 572 (685)
+..||+-|..||.++++|++++..|......++
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 678999999999999999998666654444433
No 108
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=58.06 E-value=36 Score=34.28 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=47.9
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN--DLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~--d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
.|.|.-.+++|.|.+|...|-..|+.|.+.++.... +..-.++++. ++... .++|+..|.+.+.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~~~~~-ieqL~kQL~KLid 69 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-GDDRT-IEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-CCHHH-HHHHHHHHHHHhH
Confidence 578888899999999999999999999999997643 3333334432 32222 7899988887764
No 109
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=57.37 E-value=71 Score=25.38 Aligned_cols=59 Identities=7% Similarity=0.149 Sum_probs=36.5
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHh
Q 005651 617 MIRIQSS---KKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKV 681 (685)
Q Consensus 617 ~IrI~C~---~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l 681 (685)
+|.|.+. ..++.+.+|+++|.+.++.|.-.+.+..+ ..+.+-+.. -+.+++..+|++.+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~--~~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDE--DDATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeH--HHHHHHHHHHHHHH
Confidence 4556664 46789999999999999999766544322 222222211 23455566666654
No 110
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=56.61 E-value=44 Score=40.44 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=55.4
Q ss_pred EEEEE-ccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEe-CCcccCHHHHHHHHHHHhhc
Q 005651 617 MIRIQ-SSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKM-GSRFYTQEQLKNVLAAKVGD 683 (685)
Q Consensus 617 ~IrI~-C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKv-g~~~~t~e~L~aaL~~~l~~ 683 (685)
.+.|. |+.+.|.++++...|--.++.|.+|++.+ ++..+..|.|.- .+...++..+++.+..++..
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 615 (693)
T PRK00227 548 FFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYS 615 (693)
T ss_pred eEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcC
Confidence 44444 48999999999999999999999999999 888888888876 45677889999998887753
No 111
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=55.55 E-value=34 Score=30.62 Aligned_cols=64 Identities=9% Similarity=0.177 Sum_probs=45.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeC-CcccCHHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMG-SRFYTQEQLKNVLAAK 680 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg-~~~~t~e~L~aaL~~~ 680 (685)
.|.+.-.+++|.|.||-..|.-.|+.+.+.+++...+.=+.-+++-+. +..-..++|.+-|.+.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCC
Confidence 577888899999999999999999999998888876644444444332 3334446666655543
No 112
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=54.92 E-value=63 Score=24.85 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=26.7
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEEEE
Q 005651 617 MIRIQSS---KKNHPAAKLMQALKELDLEVNHASMSV 650 (685)
Q Consensus 617 ~IrI~C~---~~~glL~~Im~ALeeL~LdV~~AsvS~ 650 (685)
+|.|.+. ...+.+.+++++|.+.++.|.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4666554 567899999999999999998776544
No 113
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=54.79 E-value=30 Score=27.81 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 544 ISYINELRTKLQSAESDKEDLQKELASVKK 573 (685)
Q Consensus 544 I~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~ 573 (685)
=.|+..|+.++..|+.+...|..++..|..
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357888889999999988888888777654
No 114
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.25 E-value=42 Score=27.74 Aligned_cols=34 Identities=6% Similarity=0.082 Sum_probs=28.8
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC
Q 005651 618 IRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN 652 (685)
Q Consensus 618 IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~ 652 (685)
++|.-+.++|-|.++++.|.+ +.+|+..+....+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~ 34 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG 34 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC
Confidence 356778999999999999999 9999988876654
No 115
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.24 E-value=91 Score=24.73 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=37.0
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHh
Q 005651 617 MIRIQSS---KKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKV 681 (685)
Q Consensus 617 ~IrI~C~---~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l 681 (685)
+|.|.+. ..++.+.+++++|.+.+++|.-.+.+..+ .-.+|++. .-+.+++..+|++.+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~----~~d~~~~~~~lh~~~ 64 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVH----NEDADKAVKAIYEEF 64 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEe----HHHHHHHHHHHHHHH
Confidence 4555554 46789999999999999999766544322 11224442 123455666777665
No 116
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=51.24 E-value=86 Score=38.37 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=42.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeCC
Q 005651 616 AMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV--NDLMIQQATVKMGS 665 (685)
Q Consensus 616 a~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~--~d~vl~ti~VKvg~ 665 (685)
+-|+|.+.++.|+|.+|..+|.+.++.|..+++... ++.+.-.|+++|.+
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~ 718 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN 718 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence 579999999999999999999999999999998765 46666678887753
No 117
>PRK08198 threonine dehydratase; Provisional
Probab=50.97 E-value=72 Score=35.64 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=47.8
Q ss_pred eCceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe-----CCEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 612 IGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV-----NDLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 612 ~g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~-----~d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
.+..+.+.|.-+.++|.|.+|++.|-+.+..|...+.... .+.+--.|.+++.+.. ..++|..+|.+
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~-~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE-HIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH-HHHHHHHHHHH
Confidence 4667789999999999999999999999998888777642 2445455666553222 34555655543
No 118
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.20 E-value=87 Score=26.91 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=40.1
Q ss_pred EccCCCChHHHHHHHHHhCCCeEEEEEEEEeCC-EEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 621 QSSKKNHPAAKLMQALKELDLEVNHASMSVVND-LMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 621 ~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d-~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
..+.++|.|.++|..|+..++.+.+...-...+ ..-|.|-+.+... .+.++++|.+
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~---~~~i~~~l~~ 62 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD---QRRLDELVQL 62 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC---HHHHHHHHHH
Confidence 336789999999999999999999998766533 4457777776322 2356555543
No 119
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=49.03 E-value=98 Score=31.49 Aligned_cols=67 Identities=6% Similarity=0.102 Sum_probs=51.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCC------EEEEEEEEEeCCcccCHHHHHHHHHHHhhc
Q 005651 616 AMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVND------LMIQQATVKMGSRFYTQEQLKNVLAAKVGD 683 (685)
Q Consensus 616 a~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d------~vl~ti~VKvg~~~~t~e~L~aaL~~~l~~ 683 (685)
+.|.|.-.+++|.+.+|-+.|-+.++.|.+.+.-+... .+.-.+.+.++. ....++|+.+|...-.+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~~~~L~~~l~~l~~e 168 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQDAANIEQAFKALCTE 168 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCCHHHHHHHHHHHHHH
Confidence 57888889999999999999999999999888776642 444456665543 34578888888776544
No 120
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=47.84 E-value=96 Score=37.54 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=43.1
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe-CCEEEEEEEEEeC
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV-NDLMIQQATVKMG 664 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~-~d~vl~ti~VKvg 664 (685)
.+.|+|.+.++.|+|.+|+.+|-+.++.|.++++... ++.+.-.|+++|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~ 660 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK 660 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC
Confidence 3579999999999999999999999999999999776 4666667888775
No 121
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=46.61 E-value=45 Score=26.61 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKE 574 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~ 574 (685)
|..|++++..|+.+.+.|+......++-
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999887776654
No 122
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=46.55 E-value=1e+02 Score=37.44 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=43.0
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeCC
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN-DLMIQQATVKMGS 665 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~-d~vl~ti~VKvg~ 665 (685)
.+.|+|.+.++.|+|.+|..+|-+.++.|.++++...+ +.+.-.|.++|.+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 35799999999999999999999999999999987665 4555668887753
No 123
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.23 E-value=1.3e+02 Score=24.09 Aligned_cols=59 Identities=7% Similarity=0.161 Sum_probs=35.6
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHh
Q 005651 617 MIRIQSS---KKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKV 681 (685)
Q Consensus 617 ~IrI~C~---~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l 681 (685)
+|.|... .+++.+.+|+++|.+.+++|.-...+..+ ..+.+-+.. -+.+++..+|++.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~--~~~~~a~~~lh~~~ 64 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDE--KDAVKALNIIHTNL 64 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeH--HHHHHHHHHHHHHH
Confidence 3444444 46789999999999999999766554422 233222222 12344555666654
No 124
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=42.76 E-value=1.2e+02 Score=33.65 Aligned_cols=68 Identities=9% Similarity=0.119 Sum_probs=46.4
Q ss_pred EeCceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe-----CCEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 611 IIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV-----NDLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 611 i~g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~-----~d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
..|..+.|.|.-+.++|.|.+|++.|.+.+.+|++...... .+...-.|++++.+ .-..++|..+|.+
T Consensus 301 ~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~ 373 (380)
T TIGR01127 301 KSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-KEHLDEILKILRD 373 (380)
T ss_pred hCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 34566789999999999999999999999999998876532 23444445554432 2233455555543
No 125
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=42.30 E-value=43 Score=33.14 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC--CCcchhhHHHHHHHHHHHHH
Q 005651 509 AERQRREKLNQRFYALRAVVPNV--SKMDKASLLGDAISYINELR 551 (685)
Q Consensus 509 aER~RRekLn~~f~~LRsLVP~~--sK~dKaSIL~dAI~YIk~Lq 551 (685)
.||.|..++++.|.-|+.|+|.. .+|.+-=-|.-+-+||..|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 58888899999999999999984 22222112555555555443
No 126
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=42.12 E-value=26 Score=25.80 Aligned_cols=19 Identities=42% Similarity=0.658 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005651 508 EAERQRREKLNQRFYALRA 526 (685)
Q Consensus 508 ~aER~RRekLn~~f~~LRs 526 (685)
+.=|+||+.|+.++..||.
T Consensus 11 eqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 11 EQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3448899999999999985
No 127
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.82 E-value=1.6e+02 Score=23.19 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=37.3
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHh
Q 005651 617 MIRIQSS---KKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKV 681 (685)
Q Consensus 617 ~IrI~C~---~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l 681 (685)
+|.|.+. ..++.+.+++++|.+.++.|.-.+.+..+ .-..|.+.- -+.+++...|++.+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~----~~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE----DDGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH----HHHHHHHHHHHHHh
Confidence 4555554 46789999999999999999766544322 112344421 23466677777765
No 128
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=41.75 E-value=65 Score=28.52 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQKELAS 570 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~ 570 (685)
+..||+-|.-||-+|++|++++..|..+...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999998887765443
No 129
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.92 E-value=69 Score=27.79 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQKE 567 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~~ 567 (685)
+..||+-|.-||-.+++|++++..|..+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e 40 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 6789999999999999999888766543
No 130
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.78 E-value=1.4e+02 Score=34.76 Aligned_cols=59 Identities=10% Similarity=0.210 Sum_probs=41.4
Q ss_pred chhhHHHHH-HHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005651 504 LNHVEAERQ-RREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKE 574 (685)
Q Consensus 504 ~~H~~aER~-RRekLn~~f~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~ 574 (685)
..+...|.+ |.+.|..+|..||.=+ ...-.-.++|+++|++|+.+++.|+.+++.++..
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqEl------------q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRREL------------DVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 457788888 7799999999996321 1112234567888888888888888887665543
No 131
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=40.61 E-value=9 Score=45.54 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=48.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCC-----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINELRTKLQSAESDKED 563 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP~~-----sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~ 563 (685)
++.|+.++||||-...+.|..|-+|.|.+ .+..++|||. +.|+.+++.-+.+.+..+.
T Consensus 788 ~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 788 SAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred ecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 46899999999999999999999999974 5668899999 7888888887777765544
No 132
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=40.39 E-value=1.2e+02 Score=29.03 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=37.4
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEE
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQAT 660 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~ 660 (685)
.|.|..++++|.|..+..+|.+.|+.+...++.-.+++=+.-.+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmv 48 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMV 48 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEE
Confidence 57888899999999999999999999999999888876544433
No 133
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=39.52 E-value=79 Score=25.20 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 005651 624 KKNHPAAKLMQALKELDLEVNHASM 648 (685)
Q Consensus 624 ~~~glL~~Im~ALeeL~LdV~~Asv 648 (685)
...+.+.+|+++|++.++.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 4578999999999999999998854
No 134
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=39.41 E-value=1.3e+02 Score=25.35 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=24.7
Q ss_pred EEEEEc---cCCCChHHHHHHHHHhCCCeEEEEE
Q 005651 617 MIRIQS---SKKNHPAAKLMQALKELDLEVNHAS 647 (685)
Q Consensus 617 ~IrI~C---~~~~glL~~Im~ALeeL~LdV~~As 647 (685)
+|.|.+ ...++.+.+|+++|.+.++.|....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455543 3567899999999999999998775
No 135
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=38.86 E-value=1.4e+02 Score=29.07 Aligned_cols=66 Identities=5% Similarity=0.003 Sum_probs=52.5
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEE-EEeCCEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASM-SVVNDLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~Asv-S~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
..+-+.+.-..+.|.|+++|+++-..++.|...+= ...+++.--++.+...+-..+.+.|..+|.+
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k 137 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRK 137 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhc
Confidence 34667788889999999999999999999987765 4567888778888776666777888777754
No 136
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=38.56 E-value=1.3e+02 Score=32.23 Aligned_cols=28 Identities=29% Similarity=0.555 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 548 NELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 548 k~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
.+++.|+..|+++++.|+.+++.+++++
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677776666666666666654
No 137
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=38.46 E-value=34 Score=31.10 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=41.2
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCc--------------cchhhhhcCCcEEEEeecCC-----ceEeeccccc
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCD--------------RARQGQVFGLQTLVCIPSAN-----GVVELGSTEV 240 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~--------------R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~ 240 (685)
.+.+..|+++.++.++.+.+.......... +..+ ...|++.++|+|+.. |||.|.++..
T Consensus 54 ~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~l~vPi~~~g~~~G~l~l~~~~~ 131 (154)
T PF01590_consen 54 MDESICGQVLQSREPIVISDVAADPRFAPQIAAQSALRALSSAERPFL-AEYGVRSYLCVPIISGGRLIGVLSLYRTRP 131 (154)
T ss_dssp TTSSHHHHHHHHTSCEEESSSGGSTTSSCHHHHHHTTBTTTHHHHHHH-HTTTESEEEEEEEEETTEEEEEEEEEEESS
T ss_pred ccccHHHHHHhCCCeEeecccccccccccccccccccccccccccccc-ccccCceeeEeeeecccCcEEEEEEEECCC
Confidence 567889999999999998875433222111 1111 157999999999533 8999988876
No 138
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=38.18 E-value=1.4e+02 Score=27.43 Aligned_cols=65 Identities=6% Similarity=0.010 Sum_probs=45.9
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
...|.|.-.+++|.|.+|-..|--.|..|.+.++...++.=+.-+++-+.+ .-..++|..-|.+.
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~-~~~i~Qi~kQL~KL 72 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND-DQRLEQMISQIEKL 72 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC-chHHHHHHHHHhCC
Confidence 356888888999999999999999999998888877765444443433332 23556666655543
No 139
>PRK06382 threonine dehydratase; Provisional
Probab=38.18 E-value=1.2e+02 Score=34.02 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=46.2
Q ss_pred EeCceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE----Ee-CCEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 611 IIGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMS----VV-NDLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 611 i~g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS----~~-~d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
..+..+.|.|.-+.++|.|.+|++.|.+.+++|++.... .. .+...-.|+++..+ .-..++|+++|.+
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-~~~~~~v~~~L~~ 398 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-QDHLDRILNALRE 398 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 346667888999999999999999999999999887664 12 23444455554431 1223456665544
No 140
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=37.98 E-value=97 Score=26.41 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=35.5
Q ss_pred ccceEEEEeCceEEEEEEccCC------CChHHHHHHHHHhCCCeEEEEEEEEe
Q 005651 604 DLDIEVKIIGWDAMIRIQSSKK------NHPAAKLMQALKELDLEVNHASMSVV 651 (685)
Q Consensus 604 ~~eVeV~i~g~ea~IrI~C~~~------~glL~~Im~ALeeL~LdV~~AsvS~~ 651 (685)
...|.++..++.+-|+|.+... ..-+..|-++|...|+.|.+.+++..
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 3567788889999999999864 23567888999999999998887654
No 141
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=37.91 E-value=2e+02 Score=23.24 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=22.1
Q ss_pred EEEEcc---CCCChHHHHHHHHHhCCCeEE
Q 005651 618 IRIQSS---KKNHPAAKLMQALKELDLEVN 644 (685)
Q Consensus 618 IrI~C~---~~~glL~~Im~ALeeL~LdV~ 644 (685)
|.|... ..++.+.+++++|.+.++.|.
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 444443 478999999999999999996
No 142
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.15 E-value=2.3e+02 Score=24.27 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=25.4
Q ss_pred EEEEE---ccCCCChHHHHHHHHHhCCCeEEEEEE
Q 005651 617 MIRIQ---SSKKNHPAAKLMQALKELDLEVNHASM 648 (685)
Q Consensus 617 ~IrI~---C~~~~glL~~Im~ALeeL~LdV~~Asv 648 (685)
+|.|. .+..+|.+.+|+++|.+.++.|-....
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 45553 346789999999999999999988854
No 143
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.14 E-value=1.5e+02 Score=32.32 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcch
Q 005651 511 RQRREKLNQRFYALRAVVPNVSKMDK 536 (685)
Q Consensus 511 R~RRekLn~~f~~LRsLVP~~sK~dK 536 (685)
+.|...|...+..|++++..+...|+
T Consensus 183 ~~~~~~L~~e~~~Lk~~~~e~~~~D~ 208 (325)
T PF08317_consen 183 RERKAELEEELENLKQLVEEIESCDQ 208 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCH
Confidence 45567888888888888776655554
No 144
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.34 E-value=1.5e+02 Score=27.68 Aligned_cols=47 Identities=4% Similarity=0.088 Sum_probs=36.0
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCC-EEEEEEEEEe
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVND-LMIQQATVKM 663 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d-~vl~ti~VKv 663 (685)
-|-+..++++|.|.+||..|...++.+++...-...+ .--|.|-|.+
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 3444447789999999999999999999998766533 3346666766
No 145
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=30.95 E-value=58 Score=35.31 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 545 SYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 545 ~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+|||=|+.||.-||.+.+.|.++++.||...
T Consensus 312 EYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 312 EYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred HHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 8999999999999999999988887776543
No 146
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.35 E-value=2.8e+02 Score=24.18 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=42.4
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEE-EEEEeCCcccCHHHHHHHHHH
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQ-ATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~t-i~VKvg~~~~t~e~L~aaL~~ 679 (685)
++++.|.-|.++|-|.+.++.|-. +-+|+.-+..-.++-.-+. +.+++.+. ..++|.+.|.+
T Consensus 1 E~~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vlvGi~~~~~--~~~~l~~~l~~ 63 (81)
T cd04907 1 ERLFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVLVGIQVPDA--DLDELKERLDA 63 (81)
T ss_pred CeEEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEEEEEEeChH--HHHHHHHHHHH
Confidence 467889999999999999999943 7888888887665432222 22344333 55666666654
No 147
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=30.01 E-value=2e+02 Score=31.12 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 005651 505 NHVEAERQRREKLNQRFYALRAVVPNVS 532 (685)
Q Consensus 505 ~H~~aER~RRekLn~~f~~LRsLVP~~s 532 (685)
.-+..=|.||.+|.+.+..|+.-=|...
T Consensus 138 ~sl~p~R~~r~~l~d~I~kLk~k~P~s~ 165 (271)
T PF13805_consen 138 ESLQPSRDRRRKLQDEIAKLKYKDPQSP 165 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTTT
T ss_pred HHHhHHHHHhHHHHHHHHHHHhcCCCCh
Confidence 3445568889999999999998766533
No 148
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.32 E-value=2.7e+02 Score=21.53 Aligned_cols=57 Identities=21% Similarity=0.163 Sum_probs=35.1
Q ss_pred EEEEEc---cCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHh
Q 005651 617 MIRIQS---SKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKV 681 (685)
Q Consensus 617 ~IrI~C---~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l 681 (685)
+|.|.+ ...++.+.+++++|.+.++.|.-.+.+ +.. .+|.+. .-+.+++..+|++.+
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~~~--is~~v~----~~~~~~~~~~l~~~l 61 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTS--EIK--ISCLVD----EDDAEKAVRALHEAF 61 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEcc--CCe--EEEEEe----HHHHHHHHHHHHHHh
Confidence 345544 245789999999999999999777643 211 123332 123455566666655
No 149
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=28.97 E-value=2.3e+02 Score=33.89 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 511 RQRREKLNQRFYALRAVVPNVSK----------MDKASLLGDAISYINELRTKLQSAESDKEDLQKELASV 571 (685)
Q Consensus 511 R~RRekLn~~f~~LRsLVP~~sK----------~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l 571 (685)
+++..++++.+..|+...|.... .+...+..++-.++.++.+++.+|.+++++|+.+++.+
T Consensus 49 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l 119 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKEL 119 (646)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888889888765221 11112223333444455555555555554444444433
No 150
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=28.94 E-value=4.1e+02 Score=24.30 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=6.9
Q ss_pred eEEEEeCceEEEEE
Q 005651 607 IEVKIIGWDAMIRI 620 (685)
Q Consensus 607 VeV~i~g~ea~IrI 620 (685)
|.|.+.|..-+++|
T Consensus 42 V~V~~~G~~~v~~v 55 (102)
T TIGR00103 42 VTVTINGNLELKSI 55 (102)
T ss_pred EEEEEEcCceEEEE
Confidence 55555554433333
No 151
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.53 E-value=1.4e+02 Score=29.55 Aligned_cols=52 Identities=33% Similarity=0.415 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 508 EAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELAS 570 (685)
Q Consensus 508 ~aER~RRekLn~~f~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~ 570 (685)
..+|+.|.++.+.-.+|+++ +-.| +=..|.| |++++.+|++|.+++.++...
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~i----S~qD------eFAkwaK-l~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAI----SAQD------EFAKWAK-LNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-----TTT------SHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC----CcHH------HHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655 3334 5567777 899999999999988766543
No 152
>PLN02678 seryl-tRNA synthetase
Probab=28.48 E-value=2.6e+02 Score=32.32 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGG 579 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~~~~~ 579 (685)
..+.++-+++|+++++.|+.+...++.++..+-..+.+-.
T Consensus 73 ~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~ 112 (448)
T PLN02678 73 ATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLV 112 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3567778899999999999999999888887766666544
No 153
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=28.30 E-value=79 Score=38.39 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=50.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 616 AMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 616 a~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
.+++|....+.|+|.+|+.+|. ||.-+.+++.+..++-.|-++ ...+...|..+|.+++.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~---~~~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK---PGFDRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec---CcccHHHHHHHHHHHHh
Confidence 5899999999999999999999 899999999999999988886 22356667777776654
No 154
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.02 E-value=2.8e+02 Score=22.58 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=22.9
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEEeC
Q 005651 624 KKNHPAAKLMQALKELDLEVNHASMSVVN 652 (685)
Q Consensus 624 ~~~glL~~Im~ALeeL~LdV~~AsvS~~~ 652 (685)
+.++.+.+++++|.+.++.|.-.+.++.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~ 40 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASK 40 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 34679999999999999999766654443
No 155
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=27.72 E-value=2.2e+02 Score=21.21 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEE
Q 005651 625 KNHPAAKLMQALKELDLEVNHASMSV 650 (685)
Q Consensus 625 ~~glL~~Im~ALeeL~LdV~~AsvS~ 650 (685)
.++.+.+++++|.+.++.|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57899999999999999998766543
No 156
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=27.67 E-value=74 Score=38.22 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=46.3
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhh-hhcCCcEEEEeec--CC---ceEeeccccc---cccChHHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQG-QVFGLQTLVCIPS--AN---GVVELGSTEV---IIQNSDLMNKV 251 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA-~~aGIqTivcIP~--~~---GVvELGSt~~---I~E~~~lv~~i 251 (685)
.+.|+.|+|+.+|.++=+.....-....+.+.... ...+++.++|||+ .+ |||.+++... =.+|.++++.|
T Consensus 254 ~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~v~GvL~l~~~~~~~F~~~dl~lL~~i 333 (686)
T PRK15429 254 EAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLKLLRQI 333 (686)
T ss_pred cccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEEECCEEEEEEEEeeCCCCcCCHHHHHHHHHH
Confidence 45589999999999998854432222222222211 1357999999994 33 9999986542 23555566655
Q ss_pred HHhc
Q 005651 252 RFLF 255 (685)
Q Consensus 252 k~~F 255 (685)
-...
T Consensus 334 A~~~ 337 (686)
T PRK15429 334 AERV 337 (686)
T ss_pred HHHH
Confidence 4443
No 157
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=27.10 E-value=2.5e+02 Score=29.79 Aligned_cols=65 Identities=32% Similarity=0.531 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHH-----------------HHhcC------------CCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 005651 506 HVEAERQRREKLNQRFYA-----------------LRAVV------------PNVSKMDKASLLGDAISYINELRTKLQS 556 (685)
Q Consensus 506 H~~aER~RRekLn~~f~~-----------------LRsLV------------P~~sK~dKaSIL~dAI~YIk~Lq~kv~e 556 (685)
.....++||+.|.+.+.. ||.-. |++.++-..-.|.+++ ..|+..+..
T Consensus 143 ~~~~~~~rR~~i~e~I~~~~~d~~de~~~~wE~aQ~rkg~~~~~~~~~~~~~~~ip~~tpLP~L~~~~---~rL~~~l~~ 219 (254)
T PF15458_consen 143 EREQKRRRREEIEEAINDDDDDSEDEERAEWEAAQLRKGMDGLSDEKDRYKPPPIPKITPLPSLSECL---ERLRESLSS 219 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHhhccCCccchhccCCCCCcccCCCCchhHHH---HHHHHHHHH
Confidence 335666677778777766 33222 2334454555677776 344455555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005651 557 AESDKEDLQKELASVKK 573 (685)
Q Consensus 557 Le~e~~~L~~~~~~l~~ 573 (685)
|+.++..+..+++.+.+
T Consensus 220 le~~~~~~~~~l~~l~~ 236 (254)
T PF15458_consen 220 LEDSKSQLQQQLESLEK 236 (254)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555544444443
No 158
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=26.96 E-value=1.6e+02 Score=23.72 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQKE 567 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~~ 567 (685)
-..+-.+|+.|.+++..+.++++.|+.+
T Consensus 18 Q~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 18 QNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567788999999999998888888654
No 159
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=26.64 E-value=3.3e+02 Score=28.67 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=41.3
Q ss_pred eEEEEEEccCCC--ChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEe-CCcccCHHHHHHHHH
Q 005651 615 DAMIRIQSSKKN--HPAAKLMQALKELDLEVNHASMSVV--NDLMIQQATVKM-GSRFYTQEQLKNVLA 678 (685)
Q Consensus 615 ea~IrI~C~~~~--glL~~Im~ALeeL~LdV~~AsvS~~--~d~vl~ti~VKv-g~~~~t~e~L~aaL~ 678 (685)
...++|.|..+. +....+++.|++.++.+.+.++... ++.+.-++.+.. .......|++.+.|.
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~ 210 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIG 210 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHh
Confidence 456888898755 4588999999999999999998654 334443333333 222334455555443
No 160
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=26.40 E-value=1.7e+02 Score=31.07 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhcCCC
Q 005651 514 REKLNQRFYALRAVVPN 530 (685)
Q Consensus 514 RekLn~~f~~LRsLVP~ 530 (685)
|.-|...|..|+.+=..
T Consensus 6 ~qLI~~lf~RL~~ae~~ 22 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ 22 (247)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 45577778888776544
No 161
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.70 E-value=4.5e+02 Score=29.95 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGGK 580 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~~~~~s 580 (685)
..+.++-+++|++++++|+++...++.++..+-..+.+-..
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~ 108 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPH 108 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34567778899999999999999998888776666655443
No 162
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=25.57 E-value=3.4e+02 Score=22.39 Aligned_cols=27 Identities=26% Similarity=0.133 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEEe
Q 005651 625 KNHPAAKLMQALKELDLEVNHASMSVV 651 (685)
Q Consensus 625 ~~glL~~Im~ALeeL~LdV~~AsvS~~ 651 (685)
.++.+.+++++|.+.+++|.-.+.+..
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s 40 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMR 40 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCC
Confidence 457999999999999999976665543
No 163
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=25.49 E-value=96 Score=26.64 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 538 SLLGDAISYINELRTKLQSAESDKEDLQ 565 (685)
Q Consensus 538 SIL~dAI~YIk~Lq~kv~eLe~e~~~L~ 565 (685)
.-|++|+.-|.+|+.+++.|+.+.+..+
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999999988866553
No 164
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.82 E-value=65 Score=32.03 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 506 HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKED 563 (685)
Q Consensus 506 H~~aER~RRekLn~~f~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~ 563 (685)
++..++..+..+.....++|.++-... .||++.++.-.+||+.|+++++++++.++.
T Consensus 116 l~~l~~~~~~~~~~i~~~~r~l~~e~~-~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 116 LKVLGVEIKADQDAIKKAYRKLLSEQH-PDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHhcC-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 556666777778888888999986544 899999999999999999999999887654
No 165
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.66 E-value=2.5e+02 Score=31.87 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGG 579 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~~~~~ 579 (685)
..+.++-+++|++++++|+++...++.++..+-..+.+-.
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~ 110 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIP 110 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4567778899999999999999999888877666665543
No 166
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=24.62 E-value=1.1e+02 Score=25.41 Aligned_cols=34 Identities=26% Similarity=0.163 Sum_probs=27.4
Q ss_pred ceEEEEEEcc----CCCChHHHHHHHHHhCCCeEEEEE
Q 005651 614 WDAMIRIQSS----KKNHPAAKLMQALKELDLEVNHAS 647 (685)
Q Consensus 614 ~ea~IrI~C~----~~~glL~~Im~ALeeL~LdV~~As 647 (685)
+-..|+|.++ ..+|.+.+|+.+|-+.++.|...+
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 3456777777 368999999999999999998777
No 167
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.34 E-value=2.2e+02 Score=25.03 Aligned_cols=49 Identities=14% Similarity=0.321 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 515 EKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQ 565 (685)
Q Consensus 515 ekLn~~f~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~ 565 (685)
..|+.+|...|++|-...-+++. +.+--.+|+.|+++++..++-...++
T Consensus 31 ~~lk~Klq~ar~~i~~lpgi~~s--~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 31 GSLKHKLQKARAAIRELPGIDRS--VEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHhCCCccCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777776554445543 45556667777766666555544443
No 168
>PF14992 TMCO5: TMCO5 family
Probab=24.21 E-value=99 Score=33.51 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 539 LLGDAISYINELRTKLQSAESDKEDL 564 (685)
Q Consensus 539 IL~dAI~YIk~Lq~kv~eLe~e~~~L 564 (685)
+..|++.||++||++++.++.+++.+
T Consensus 145 l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 145 LCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999887754
No 169
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=24.07 E-value=3.9e+02 Score=22.72 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=25.5
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEE
Q 005651 617 MIRIQSS---KKNHPAAKLMQALKELDLEVNHASM 648 (685)
Q Consensus 617 ~IrI~C~---~~~glL~~Im~ALeeL~LdV~~Asv 648 (685)
+|.|.+. ..++.+.+|+++|.+.++.|.....
T Consensus 3 ~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred EEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4555554 4679999999999999999988864
No 170
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.87 E-value=4e+02 Score=23.18 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=25.7
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEE
Q 005651 617 MIRIQSS---KKNHPAAKLMQALKELDLEVNHASM 648 (685)
Q Consensus 617 ~IrI~C~---~~~glL~~Im~ALeeL~LdV~~Asv 648 (685)
+|.|.+. ..+|.+.+|+++|.+.++.|-....
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4555544 5689999999999999999998854
No 171
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=23.80 E-value=4.4e+02 Score=22.10 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 516 KLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQK 566 (685)
Q Consensus 516 kLn~~f~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~ 566 (685)
++.+.+..|+.++ ..||..++.+|-.-|.+...+++.|+.+++++..
T Consensus 15 ki~~Gae~m~~~~----~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 15 KIKEGAENMLQAY----STDKKKVLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHHHHHHH----CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554 3566667888888888888888888888777653
No 172
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=23.55 E-value=84 Score=36.38 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=49.8
Q ss_pred CCCC-cccceecCCCceEecCCCccCCCCCccch--hhhhcCCcEEEEeecC-----CceEeeccccc---cccChHHHH
Q 005651 181 GGGG-LPGQAYFGNSPVWVSGAERLANSGCDRAR--QGQVFGLQTLVCIPSA-----NGVVELGSTEV---IIQNSDLMN 249 (685)
Q Consensus 181 ~G~G-lpGka~~sg~~~Wl~~~~~~~~~~~~R~~--lA~~aGIqTivcIP~~-----~GVvELGSt~~---I~E~~~lv~ 249 (685)
.|+| ..|.++.+|.++.+.+..... .+..|.. -+.-.||..++|||+. -|||.+-+... -.+|..++.
T Consensus 68 ~geGP~l~av~~~g~~v~v~~~~~~p-~~~~~~~~~~~~~~gi~S~l~vPL~~~~~~~GvL~l~~~~~~~f~~~~~~~l~ 146 (509)
T PRK05022 68 LEEHPRLEAILRAGDPVRFPADSELP-DPYDGLIPGVQESLPVHDCMGLPLFVDGRLIGALTLDALDPGQFDAFSDEELR 146 (509)
T ss_pred CCcchHHHHHHhcCCeEEEecCCCCC-cccccccccccccCCcceEEEEEEEECCEEEEEEEEeeCCCCcCCHHHHHHHH
Confidence 8888 679998889999888544322 2232321 1234589999999952 28999987653 445567777
Q ss_pred HHHHhcc
Q 005651 250 KVRFLFN 256 (685)
Q Consensus 250 ~ik~~F~ 256 (685)
.+-..+.
T Consensus 147 ~~a~~~a 153 (509)
T PRK05022 147 ALAALAA 153 (509)
T ss_pred HHHHHHH
Confidence 7766664
No 173
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.36 E-value=2.9e+02 Score=30.61 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 535 DKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 535 dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
.=+.+|.++-+-.+.|+..+++|..+..+++..+.-++..+
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~l 109 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKL 109 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 33558999999999999999999998888777665555433
No 174
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.29 E-value=1.2e+02 Score=25.31 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 547 INELRTKLQSAESDKEDLQKELASV 571 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l 571 (685)
|++|+.++++++.+.+.|+.+++.+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555554444433
No 175
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=23.01 E-value=3.6e+02 Score=20.79 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=32.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHh
Q 005651 624 KKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKV 681 (685)
Q Consensus 624 ~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l 681 (685)
..++.+.+++++|.+.++.|.-.+.+ +.. .+|.+. .-+.+++..+|++.+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s--~~~--is~~v~----~~d~~~~~~~l~~~~ 61 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMISTS--EIK--ISCLID----EDDAEKAVRALHEAF 61 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcc--Cce--EEEEEe----HHHHHHHHHHHHHHh
Confidence 45789999999999999999777643 211 224442 123455566666655
No 176
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=22.99 E-value=4.7e+02 Score=22.30 Aligned_cols=57 Identities=18% Similarity=0.364 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 005651 515 EKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKE--DLQKELASVKK 573 (685)
Q Consensus 515 ekLn~~f~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~--~L~~~~~~l~~ 573 (685)
+.+|+++..++.-.|..+ .++..+| -|++...++.+..+++....+ .++.+++.+..
T Consensus 28 ~~i~~~i~~~~~~~~~~~-~~~~~vl-aaLnla~e~~~~~~~~~~~~~~~~l~~~i~~L~~ 86 (89)
T PF05164_consen 28 ELINEKINEIKKKYPKLS-PERLAVL-AALNLADELLKLKRELDELEELERLEERIEELNE 86 (89)
T ss_dssp HHHHHHHHHHCTTCCTSS-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC-HHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 789999999999988544 3455543 455555555444444444333 55555555543
No 177
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=21.97 E-value=2.8e+02 Score=22.96 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=25.5
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEEE
Q 005651 617 MIRIQSS---KKNHPAAKLMQALKELDLEVNHASMS 649 (685)
Q Consensus 617 ~IrI~C~---~~~glL~~Im~ALeeL~LdV~~AsvS 649 (685)
+|.|... ...+.+.+++++|.+.++.|.-.+.+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 4555432 46789999999999999999877655
No 178
>PRK11899 prephenate dehydratase; Provisional
Probab=21.97 E-value=4.7e+02 Score=28.23 Aligned_cols=65 Identities=6% Similarity=0.011 Sum_probs=46.4
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCC-EEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVND-LMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d-~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
...|-+..++++|.|.++|..|...++..+....-...+ ..-|.|-+.+.... ..+.++.+|.+.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~-~d~~v~~aL~~l 259 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP-EDRNVALALEEL 259 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC-CCHHHHHHHHHH
Confidence 344445557899999999999999999999888777644 55678888874322 334566665543
No 179
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.93 E-value=1.7e+02 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 539 LLGDAISYINELRTKLQSAESDKEDLQ 565 (685)
Q Consensus 539 IL~dAI~YIk~Lq~kv~eLe~e~~~L~ 565 (685)
-|.+|=...+.|..+|+.|+.+++.++
T Consensus 33 kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 33 KLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477777777777777777777777664
No 180
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.83 E-value=2.1e+02 Score=28.66 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005651 547 INELRTKLQSAESDKEDLQ 565 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~ 565 (685)
+.+|+.+++.|+.+++.|.
T Consensus 113 ~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 181
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=21.60 E-value=1.1e+02 Score=32.44 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchhhH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 511 RQRREKLNQRFYALRAVVPNVSKMDKASL-------LGDAISYINELRTKLQSAESDKEDL 564 (685)
Q Consensus 511 R~RRekLn~~f~~LRsLVP~~sK~dKaSI-------L~dAI~YIk~Lq~kv~eLe~e~~~L 564 (685)
|-|=.+|..+..+|+.-+ .|+++. +++|...=.+||.|+++|+++..+.
T Consensus 15 rL~v~~LhHQvlTLqcQL-----RDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea 70 (277)
T PF15030_consen 15 RLRVQQLHHQVLTLQCQL-----RDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEA 70 (277)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 334455666777776655 344442 5577777777888888887766554
No 182
>PRK14127 cell division protein GpsB; Provisional
Probab=21.40 E-value=2.4e+02 Score=26.46 Aligned_cols=38 Identities=13% Similarity=0.387 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005651 539 LLGDAISYINELRTKLQSAESDKEDLQKELASVKKELA 576 (685)
Q Consensus 539 IL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~~ 576 (685)
.|++.+.-+..|.+++.+|+++...|+.+++.+.....
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 58888888888888888888888888888877766543
No 183
>smart00338 BRLZ basic region leucin zipper.
Probab=21.35 E-value=4.7e+02 Score=21.51 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005651 511 RQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKE 574 (685)
Q Consensus 511 R~RRekLn~~f~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~ 574 (685)
+++|.++..+..+-++= .-|-.-+.+--.-|..|+.+..+|..+...|+.++..++..
T Consensus 5 k~~rR~~rNR~aA~~~R------~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 5 KRRRRRERNREAARRSR------ERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555444432 22333445555556677777778888877777777666644
No 184
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=21.11 E-value=92 Score=30.65 Aligned_cols=27 Identities=37% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcC
Q 005651 502 EPLNHVEAERQRREKLNQRFYALRAVV 528 (685)
Q Consensus 502 ~~~~H~~aER~RRekLn~~f~~LRsLV 528 (685)
++.+....||+||.=--.-|.-||..=
T Consensus 11 ErEnnk~RERrRRAIaakIfaGLR~~G 37 (150)
T PF05687_consen 11 ERENNKRRERRRRAIAAKIFAGLRAHG 37 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888899999976667788888763
No 185
>PRK08526 threonine dehydratase; Provisional
Probab=20.21 E-value=3.5e+02 Score=30.60 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=36.8
Q ss_pred eCceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCC
Q 005651 612 IGWDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVND 653 (685)
Q Consensus 612 ~g~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d 653 (685)
.|..+.++|.-+.++|-|.++++.|-+.+.+|++........
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~ 364 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFST 364 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccC
Confidence 567789999999999999999999999999999988866443
No 186
>PRK00846 hypothetical protein; Provisional
Probab=20.13 E-value=6.1e+02 Score=22.41 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 513 RREKLNQRFYALRAVVPNVSKMDKASLLGDAISY----INELRTKLQSAESDKEDLQKELASVK 572 (685)
Q Consensus 513 RRekLn~~f~~LRsLVP~~sK~dKaSIL~dAI~Y----Ik~Lq~kv~eLe~e~~~L~~~~~~l~ 572 (685)
|-+.|.+|+..|-.- .+...++|+- |...++.+..|+++++.|..+++++.
T Consensus 7 ~~~~le~Ri~~LE~r---------lAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 7 RDQALEARLVELETR---------LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556788888888654 4445555543 33466677777777776666665544
Done!