Query 005651
Match_columns 685
No_of_seqs 359 out of 1408
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 03:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 6.3E-16 2.2E-20 133.5 9.1 69 503-571 7-76 (82)
2 1nkp_B MAX protein, MYC proto- 99.6 2.4E-15 8.2E-20 129.9 8.6 75 502-576 2-78 (83)
3 1nkp_A C-MYC, MYC proto-oncoge 99.6 4.2E-15 1.4E-19 130.0 8.9 74 502-575 6-82 (88)
4 1nlw_A MAD protein, MAX dimeri 99.6 7.3E-15 2.5E-19 126.3 10.2 73 503-575 2-77 (80)
5 1hlo_A Protein (transcription 99.5 9.3E-15 3.2E-19 125.5 7.2 66 502-567 12-79 (80)
6 1an4_A Protein (upstream stimu 99.4 3.9E-14 1.3E-18 116.9 3.4 53 502-554 5-63 (65)
7 4h10_B Circadian locomoter out 99.4 1.8E-13 6.3E-18 114.8 5.9 57 502-558 8-65 (71)
8 4ati_A MITF, microphthalmia-as 99.4 2.1E-13 7E-18 125.4 6.6 60 503-562 28-91 (118)
9 1a0a_A BHLH, protein (phosphat 99.4 6.1E-14 2.1E-18 115.4 1.0 52 503-554 3-61 (63)
10 4h10_A ARYL hydrocarbon recept 99.3 4.6E-13 1.6E-17 113.2 3.1 50 503-552 10-63 (73)
11 3u5v_A Protein MAX, transcript 99.3 8.3E-13 2.9E-17 112.4 3.8 58 501-558 4-65 (76)
12 2ql2_B Neurod1, neurogenic dif 99.0 3.2E-10 1.1E-14 92.4 5.4 53 503-555 3-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 99.0 2.3E-10 7.7E-15 95.5 4.2 55 501-555 11-67 (68)
14 4f3l_A Mclock, circadian locom 98.8 4.3E-09 1.5E-13 112.4 5.7 51 503-553 13-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 2.4E-08 8.3E-13 107.8 5.2 51 503-553 14-68 (387)
16 2lfh_A DNA-binding protein inh 98.4 4.9E-08 1.7E-12 80.9 1.7 45 508-552 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.3 1.5E-06 5.1E-11 74.8 7.4 51 514-564 4-58 (83)
18 4aya_A DNA-binding protein inh 97.8 3.4E-05 1.1E-09 68.3 6.2 47 509-555 32-81 (97)
19 1zpv_A ACT domain protein; str 96.6 0.022 7.6E-07 48.1 11.6 66 615-681 5-70 (91)
20 1u8s_A Glycine cleavage system 95.4 0.06 2E-06 52.0 9.6 66 615-682 6-71 (192)
21 2nyi_A Unknown protein; protei 94.7 0.093 3.2E-06 51.2 8.7 65 615-679 5-71 (195)
22 1f5m_A GAF; CGMP binding, sign 94.1 0.03 1E-06 54.0 3.6 73 172-255 92-173 (180)
23 2nyi_A Unknown protein; protei 94.0 0.16 5.5E-06 49.5 8.8 66 615-682 93-164 (195)
24 3trc_A Phosphoenolpyruvate-pro 93.9 0.11 3.8E-06 46.5 6.9 72 181-254 75-154 (171)
25 3k2n_A Sigma-54-dependent tran 93.5 0.75 2.6E-05 41.5 11.9 72 181-253 75-158 (177)
26 1u8s_A Glycine cleavage system 93.3 0.54 1.8E-05 45.3 11.1 67 615-682 93-167 (192)
27 3e0y_A Conserved domain protei 93.2 0.11 3.9E-06 46.8 5.9 73 181-255 80-160 (181)
28 2ko1_A CTR148A, GTP pyrophosph 92.6 0.39 1.3E-05 39.7 7.8 50 615-664 5-54 (88)
29 3dba_A CONE CGMP-specific 3',5 92.0 0.059 2E-06 50.8 2.1 76 173-255 82-167 (180)
30 3ci6_A Phosphoenolpyruvate-pro 92.0 0.2 6.9E-06 44.2 5.6 72 181-254 77-156 (171)
31 2e4s_A CAMP and CAMP-inhibited 91.7 0.039 1.3E-06 50.7 0.6 77 172-255 84-170 (189)
32 3oov_A Methyl-accepting chemot 91.5 0.46 1.6E-05 42.3 7.6 73 182-254 72-155 (169)
33 1vhm_A Protein YEBR; structura 91.4 0.11 3.7E-06 51.1 3.4 73 173-256 88-168 (195)
34 3p96_A Phosphoserine phosphata 90.8 0.63 2.2E-05 49.8 9.0 67 614-680 11-77 (415)
35 3mmh_A FRMSR, methionine-R-sul 90.6 0.12 4E-06 49.5 2.8 72 173-255 77-156 (167)
36 2vjw_A GAF-B, GAF family prote 90.2 0.18 6.3E-06 46.3 3.6 48 173-238 55-107 (149)
37 3o1l_A Formyltetrahydrofolate 90.0 1.5 5.1E-05 46.0 10.8 66 615-680 22-89 (302)
38 3obi_A Formyltetrahydrofolate 89.8 1.4 4.8E-05 45.8 10.3 67 614-680 5-73 (288)
39 2qyb_A Membrane protein, putat 89.5 1.2 4.2E-05 40.4 8.7 74 181-256 70-153 (181)
40 3n0v_A Formyltetrahydrofolate 89.2 1.7 5.8E-05 45.2 10.4 66 614-680 7-74 (286)
41 3rfb_A Putative uncharacterize 87.9 0.45 1.5E-05 45.9 4.6 73 172-256 76-157 (171)
42 3hcy_A Putative two-component 87.8 0.59 2E-05 41.4 5.1 70 181-252 52-130 (151)
43 3ksh_A Putative uncharacterize 87.7 0.31 1.1E-05 46.5 3.4 73 172-255 75-155 (160)
44 2w3g_A DOSS, two component sen 87.7 0.46 1.6E-05 41.4 4.2 71 181-254 59-138 (153)
45 3lou_A Formyltetrahydrofolate 87.3 2.3 7.8E-05 44.3 9.9 67 614-680 9-79 (292)
46 2wt7_A Proto-oncogene protein 87.0 2.7 9.1E-05 34.0 8.0 53 510-575 1-53 (63)
47 3nrb_A Formyltetrahydrofolate 79.2 8.3 0.00029 40.0 10.1 65 614-680 6-72 (287)
48 2f1f_A Acetolactate synthase i 78.2 2.7 9.4E-05 40.2 5.6 63 616-680 4-68 (164)
49 2zmf_A CAMP and CAMP-inhibited 78.0 0.98 3.4E-05 40.9 2.4 73 181-254 88-169 (189)
50 2oqq_A Transcription factor HY 76.6 4.5 0.00015 30.3 5.0 30 545-574 3-32 (42)
51 3ibj_A CGMP-dependent 3',5'-cy 75.4 1.4 4.9E-05 50.4 3.3 74 181-255 248-331 (691)
52 1dh3_A Transcription factor CR 74.4 4.5 0.00015 31.9 4.9 31 545-575 22-52 (55)
53 2pc6_A Probable acetolactate s 73.1 3 0.0001 40.0 4.4 63 616-680 5-69 (165)
54 2fgc_A Acetolactate synthase, 72.3 5.4 0.00018 39.3 6.0 63 616-680 30-94 (193)
55 2jhe_A Transcription regulator 68.9 11 0.00036 34.5 7.1 35 617-651 2-36 (190)
56 1kd8_B GABH BLL, GCN4 acid bas 68.4 8.9 0.0003 27.8 4.8 29 547-575 3-31 (36)
57 1ykd_A Adenylate cyclase; GAF 68.4 1.9 6.3E-05 45.0 1.9 58 181-239 265-331 (398)
58 1mc0_A 3',5'-cyclic nucleotide 68.3 3.4 0.00012 42.2 3.9 73 181-255 248-331 (368)
59 3o5y_A Sensor protein; GAF dom 67.6 5.1 0.00017 37.5 4.6 73 181-255 57-137 (165)
60 1jnm_A Proto-oncogene C-JUN; B 65.1 9.6 0.00033 30.5 5.1 33 543-575 20-52 (62)
61 2k2n_A Sensor protein, SYB-CPH 65.1 5.6 0.00019 36.3 4.3 57 182-239 77-142 (172)
62 2dgc_A Protein (GCN4); basic d 64.5 8.8 0.0003 31.1 4.8 32 544-575 29-60 (63)
63 1y7p_A Hypothetical protein AF 64.0 15 0.00051 37.0 7.3 61 615-679 4-69 (223)
64 1t2k_D Cyclic-AMP-dependent tr 63.5 11 0.00037 30.1 5.1 33 543-575 20-52 (61)
65 2wq1_A General control protein 62.8 15 0.0005 26.2 4.9 29 547-575 2-30 (33)
66 1kd8_A GABH AIV, GCN4 acid bas 62.5 9.5 0.00033 27.6 4.0 29 547-575 3-31 (36)
67 2oxj_A Hybrid alpha/beta pepti 62.4 16 0.00054 26.2 5.1 29 547-575 3-31 (34)
68 3p01_A Two-component response 61.3 2.1 7.3E-05 39.5 0.7 70 182-253 94-171 (184)
69 3c3g_A Alpha/beta peptide with 61.3 15 0.00052 26.1 4.8 29 547-575 2-30 (33)
70 1mc0_A 3',5'-cyclic nucleotide 60.1 2.6 8.9E-05 43.1 1.1 76 172-255 74-160 (368)
71 2lb5_A Sensor histidine kinase 58.6 7.2 0.00025 36.6 3.9 74 181-255 106-191 (208)
72 3m48_A General control protein 58.4 11 0.00039 26.8 3.8 29 547-575 2-30 (33)
73 3c3f_A Alpha/beta peptide with 57.9 19 0.00064 25.8 4.8 29 547-575 3-31 (34)
74 2l5g_A GPS2 protein, G protein 55.8 21 0.00071 26.1 4.8 32 533-564 3-34 (38)
75 1gd2_E Transcription factor PA 55.4 15 0.0005 30.5 4.7 27 544-570 28-54 (70)
76 2yy0_A C-MYC-binding protein; 55.2 9.4 0.00032 30.0 3.3 27 549-575 23-49 (53)
77 2f06_A Conserved hypothetical 55.2 57 0.0019 29.3 9.2 58 617-680 74-131 (144)
78 2hy6_A General control protein 53.5 17 0.00058 26.0 4.0 29 547-575 3-31 (34)
79 1ykd_A Adenylate cyclase; GAF 52.3 2.3 7.8E-05 44.3 -0.9 58 181-238 78-143 (398)
80 3bjc_A CGMP-specific 3',5'-cyc 51.7 3.1 0.00011 49.3 0.0 75 181-256 228-314 (878)
81 3v86_A De novo design helix; c 51.3 17 0.00059 24.1 3.5 26 546-571 1-26 (27)
82 2r2v_A GCN4 leucine zipper; co 49.9 32 0.0011 24.7 4.9 29 547-575 3-31 (34)
83 1ci6_A Transcription factor AT 49.3 26 0.00087 28.2 5.1 24 548-571 33-56 (63)
84 2jee_A YIIU; FTSZ, septum, coi 49.3 32 0.0011 29.3 5.9 31 540-570 15-45 (81)
85 1uo4_A General control protein 49.2 23 0.00078 25.4 4.1 29 547-575 3-31 (34)
86 3a98_B Engulfment and cell mot 48.1 10 0.00035 37.5 3.1 32 69-106 25-66 (203)
87 3he4_B Synzip5; heterodimeric 46.9 53 0.0018 24.2 5.9 27 540-566 5-31 (46)
88 2bni_A General control protein 46.3 23 0.0008 25.4 3.8 30 546-575 2-31 (34)
89 1zme_C Proline utilization tra 44.2 19 0.00064 28.5 3.6 23 545-567 44-66 (70)
90 2re1_A Aspartokinase, alpha an 41.7 77 0.0026 29.4 8.1 53 609-661 19-73 (167)
91 3ibj_A CGMP-dependent 3',5'-cy 40.7 8.1 0.00028 44.1 1.2 57 173-238 76-139 (691)
92 2yy0_A C-MYC-binding protein; 40.3 40 0.0014 26.4 4.8 33 542-574 2-41 (53)
93 2re1_A Aspartokinase, alpha an 40.2 1.3E+02 0.0045 27.8 9.4 66 609-682 97-165 (167)
94 2f06_A Conserved hypothetical 39.9 1.3E+02 0.0043 26.9 9.0 57 617-679 8-64 (144)
95 3bjc_A CGMP-specific 3',5'-cyc 38.7 6.5 0.00022 46.5 0.0 57 181-239 410-477 (878)
96 2zvf_A Alanyl-tRNA synthetase; 38.2 2.4E+02 0.0082 25.9 12.3 106 542-682 29-135 (171)
97 3azd_A Short alpha-tropomyosin 35.8 15 0.00052 26.7 1.6 33 543-575 2-34 (37)
98 3k29_A Putative uncharacterize 34.3 1.1E+02 0.0037 29.5 7.5 62 505-569 40-102 (169)
99 3qne_A Seryl-tRNA synthetase, 33.8 2.3E+02 0.008 31.4 11.4 39 541-579 74-112 (485)
100 3w03_C DNA repair protein XRCC 33.3 66 0.0023 31.4 6.1 36 538-573 145-180 (184)
101 2dt9_A Aspartokinase; protein- 32.6 96 0.0033 28.7 7.1 54 609-662 10-67 (167)
102 3nmd_A CGMP dependent protein 32.2 1E+02 0.0034 25.7 6.1 36 540-575 28-63 (72)
103 2dq0_A Seryl-tRNA synthetase; 31.7 2.7E+02 0.0091 30.5 11.4 38 542-579 73-110 (455)
104 1uii_A Geminin; human, DNA rep 30.5 89 0.003 26.8 5.7 33 540-572 41-73 (83)
105 1gmj_A ATPase inhibitor; coile 28.7 1.4E+02 0.0049 25.5 6.7 45 514-573 35-79 (84)
106 2vnl_A Bifunctional tail prote 28.6 71 0.0024 30.1 5.1 49 527-575 101-149 (151)
107 2dtj_A Aspartokinase; protein- 28.4 1.3E+02 0.0043 28.4 7.2 41 609-649 9-50 (178)
108 1fmh_B General control protein 26.6 1.3E+02 0.0044 20.8 4.8 28 547-574 3-30 (33)
109 1hjb_A Ccaat/enhancer binding 26.5 74 0.0025 27.4 4.6 29 547-575 45-73 (87)
110 1rwu_A Hypothetical UPF0250 pr 26.4 2E+02 0.0069 25.5 7.6 63 615-683 36-101 (109)
111 1gu4_A CAAT/enhancer binding p 26.3 83 0.0028 26.5 4.8 26 549-574 40-65 (78)
112 2er8_A Regulatory protein Leu3 26.2 29 0.00099 27.7 1.9 21 545-565 49-69 (72)
113 2dtj_A Aspartokinase; protein- 25.9 2E+02 0.007 26.9 8.2 67 608-682 88-157 (178)
114 2wt7_B Transcription factor MA 25.7 3.1E+02 0.011 23.7 8.4 64 505-574 21-84 (90)
115 3cit_A Sensor histidine kinase 25.5 49 0.0017 31.5 3.6 38 218-255 94-141 (160)
116 3he4_B Synzip5; heterodimeric 25.5 1E+02 0.0035 22.7 4.5 21 546-566 4-24 (46)
117 1go4_E MAD1 (mitotic arrest de 25.1 84 0.0029 27.8 4.8 33 545-577 12-44 (100)
118 3mq7_A Bone marrow stromal ant 24.6 88 0.003 28.4 4.8 27 547-573 73-99 (121)
119 3fx7_A Putative uncharacterize 24.2 1.4E+02 0.0048 26.1 5.9 23 540-562 65-87 (94)
120 3plt_A Sphingolipid long chain 23.0 1.8E+02 0.0063 29.3 7.4 27 505-531 104-130 (234)
121 3s1t_A Aspartokinase; ACT doma 22.7 1.7E+02 0.0059 27.7 7.0 67 608-682 89-158 (181)
122 2dt9_A Aspartokinase; protein- 22.5 2.9E+02 0.0099 25.4 8.4 67 608-682 88-157 (167)
123 3qh9_A Liprin-beta-2; coiled-c 22.3 1.3E+02 0.0045 25.6 5.2 33 542-574 23-55 (81)
124 1g70_B RSG-1.2 peptide; peptid 22.2 49 0.0017 21.8 2.0 9 508-516 11-19 (26)
125 3mq7_A Bone marrow stromal ant 22.0 1E+02 0.0034 28.0 4.7 38 540-577 73-110 (121)
126 3ab4_A Aspartokinase; aspartat 21.8 3.5E+02 0.012 28.8 10.0 54 609-662 258-315 (421)
127 4dzn_A Coiled-coil peptide CC- 21.5 1.7E+02 0.0058 20.2 4.6 27 547-573 4-30 (33)
128 2pnv_A Small conductance calci 20.1 2.2E+02 0.0076 21.4 5.5 33 543-575 7-39 (43)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.63 E-value=6.3e-16 Score=133.47 Aligned_cols=69 Identities=23% Similarity=0.385 Sum_probs=64.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVPNV-SKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASV 571 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP~~-sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l 571 (685)
+.+|+.+||+||++||++|..|+++||+. .|+||++||.+||+||++|+.+++.|+.+.+.|+..+...
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999996 8999999999999999999999999999999998876643
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.59 E-value=2.4e-15 Score=129.88 Aligned_cols=75 Identities=29% Similarity=0.513 Sum_probs=69.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCCC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005651 502 EPLNHVEAERQRREKLNQRFYALRAVVPN--VSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKELA 576 (685)
Q Consensus 502 ~~~~H~~aER~RRekLn~~f~~LRsLVP~--~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~~ 576 (685)
.+.+|+.+||+||.+||+.|..|+++||. ..|++|++||.+||+||++|+.++++|+.+++.|+.+...+...+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999998 4899999999999999999999999999999999998888877664
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=4.2e-15 Score=129.98 Aligned_cols=74 Identities=32% Similarity=0.492 Sum_probs=67.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCCCC---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 502 EPLNHVEAERQRREKLNQRFYALRAVVPNV---SKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 502 ~~~~H~~aER~RRekLn~~f~~LRsLVP~~---sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
.+.+|+++||+||++||++|..||.+||.. .|++|++||.+||+||++|+.+.+.|+.+++.|+.+...|+..+
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999985 69999999999999999999999999998888888777776654
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=7.3e-15 Score=126.29 Aligned_cols=73 Identities=30% Similarity=0.363 Sum_probs=68.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCC---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVPNV---SKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP~~---sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+.+|+.+||+||..||.+|..||++||.. .|++|++||.+|++||++|+++.++|+.+++.|+.+...++..+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999974 68899999999999999999999999999999999988887765
No 5
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=9.3e-15 Score=125.47 Aligned_cols=66 Identities=32% Similarity=0.584 Sum_probs=61.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCCCC--CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 502 EPLNHVEAERQRREKLNQRFYALRAVVPNV--SKMDKASLLGDAISYINELRTKLQSAESDKEDLQKE 567 (685)
Q Consensus 502 ~~~~H~~aER~RRekLn~~f~~LRsLVP~~--sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~ 567 (685)
.+.+|+.+||+||.+||++|..|+++||.. .|++|++||..||+||++|++++++|+.+++.|+.+
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999985 699999999999999999999999999999988753
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=3.9e-14 Score=116.91 Aligned_cols=53 Identities=36% Similarity=0.572 Sum_probs=48.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCCCCC------CcchhhHHHHHHHHHHHHHHHH
Q 005651 502 EPLNHVEAERQRREKLNQRFYALRAVVPNVS------KMDKASLLGDAISYINELRTKL 554 (685)
Q Consensus 502 ~~~~H~~aER~RRekLn~~f~~LRsLVP~~s------K~dKaSIL~dAI~YIk~Lq~kv 554 (685)
.+.+|+.+||+||++||++|..|++|||.+. |++|++||.+||+||++||++.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999864 7899999999999999999864
No 7
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.41 E-value=1.8e-13 Score=114.84 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=51.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCCC-CCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 005651 502 EPLNHVEAERQRREKLNQRFYALRAVVPN-VSKMDKASLLGDAISYINELRTKLQSAE 558 (685)
Q Consensus 502 ~~~~H~~aER~RRekLn~~f~~LRsLVP~-~sK~dKaSIL~dAI~YIk~Lq~kv~eLe 558 (685)
.+.+|+++||+||++||++|..|++|||. ..|+||++||.+||+||++||+++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35689999999999999999999999997 4699999999999999999999876554
No 8
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.40 E-value=2.1e-13 Score=125.40 Aligned_cols=60 Identities=28% Similarity=0.463 Sum_probs=52.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVPNV----SKMDKASLLGDAISYINELRTKLQSAESDKE 562 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP~~----sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~ 562 (685)
+.+|+.+||+||++||++|..|++|||.+ .|++|++||.+||+||++||++++.|+++..
T Consensus 28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999986 3778999999999999999999999987543
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.37 E-value=6.1e-14 Score=115.36 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=47.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCC-------CCcchhhHHHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVPNV-------SKMDKASLLGDAISYINELRTKL 554 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP~~-------sK~dKaSIL~dAI~YIk~Lq~kv 554 (685)
+.+|+.+||+||++||.+|..|++|||+. .|.+||+||..||+||++||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999964 56679999999999999999865
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.32 E-value=4.6e-13 Score=113.18 Aligned_cols=50 Identities=32% Similarity=0.499 Sum_probs=46.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCC----CCcchhhHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVPNV----SKMDKASLLGDAISYINELRT 552 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP~~----sK~dKaSIL~dAI~YIk~Lq~ 552 (685)
+.+|+.+||+||++||++|..|++|||.+ .|+|||+||..||+||+.|+.
T Consensus 10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999974 799999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.30 E-value=8.3e-13 Score=112.44 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=48.5
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhcCCC---CCCc-chhhHHHHHHHHHHHHHHHHHHHH
Q 005651 501 EEPLNHVEAERQRREKLNQRFYALRAVVPN---VSKM-DKASLLGDAISYINELRTKLQSAE 558 (685)
Q Consensus 501 e~~~~H~~aER~RRekLn~~f~~LRsLVP~---~sK~-dKaSIL~dAI~YIk~Lq~kv~eLe 558 (685)
+.|..|++.||+||.+||++|..||.+||. ..|. .|++||..||+||+.||+++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999995 3455 688899999999999999999875
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.00 E-value=3.2e-10 Score=92.36 Aligned_cols=53 Identities=34% Similarity=0.376 Sum_probs=48.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCCCC---CCcchhhHHHHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVPNV---SKMDKASLLGDAISYINELRTKLQ 555 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP~~---sK~dKaSIL~dAI~YIk~Lq~kv~ 555 (685)
+..|+..||+|+..||+.|..||.+||.. .|.+|..||..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999974 589999999999999999998664
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.99 E-value=2.3e-10 Score=95.46 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=49.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhcCCC--CCCcchhhHHHHHHHHHHHHHHHHH
Q 005651 501 EEPLNHVEAERQRREKLNQRFYALRAVVPN--VSKMDKASLLGDAISYINELRTKLQ 555 (685)
Q Consensus 501 e~~~~H~~aER~RRekLn~~f~~LRsLVP~--~sK~dKaSIL~dAI~YIk~Lq~kv~ 555 (685)
..+..|++.||+|+..||+.|..||.+||. ..|++|..||..||+||..|++.++
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 356789999999999999999999999997 4789999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.77 E-value=4.3e-09 Score=112.36 Aligned_cols=51 Identities=25% Similarity=0.542 Sum_probs=42.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCC-CCCCcchhhHHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVP-NVSKMDKASLLGDAISYINELRTK 553 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP-~~sK~dKaSIL~dAI~YIk~Lq~k 553 (685)
+.+|+.+||+||++||..|..|++||| +..|+||++||..||.||+.|+..
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 347999999999999999999999999 578999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.59 E-value=2.4e-08 Score=107.80 Aligned_cols=51 Identities=31% Similarity=0.462 Sum_probs=47.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhcCC----CCCCcchhhHHHHHHHHHHHHHHH
Q 005651 503 PLNHVEAERQRREKLNQRFYALRAVVP----NVSKMDKASLLGDAISYINELRTK 553 (685)
Q Consensus 503 ~~~H~~aER~RRekLn~~f~~LRsLVP----~~sK~dKaSIL~dAI~YIk~Lq~k 553 (685)
+.+|+.+||+||++||..|..|+.||| ...|+||++||..||.|||.|+..
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999999999 578999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.43 E-value=4.9e-08 Score=80.92 Aligned_cols=45 Identities=27% Similarity=0.509 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC---CCcchhhHHHHHHHHHHHHHH
Q 005651 508 EAERQRREKLNQRFYALRAVVPNV---SKMDKASLLGDAISYINELRT 552 (685)
Q Consensus 508 ~aER~RRekLn~~f~~LRsLVP~~---sK~dKaSIL~dAI~YIk~Lq~ 552 (685)
+.||+|+..||+.|..||.+||.. .|.+|..||.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 457899999999999999999974 688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.28 E-value=1.5e-06 Score=74.76 Aligned_cols=51 Identities=24% Similarity=0.442 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 514 REKLNQRFYALRAVVPNV----SKMDKASLLGDAISYINELRTKLQSAESDKEDL 564 (685)
Q Consensus 514 RekLn~~f~~LRsLVP~~----sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L 564 (685)
|..||++|..|..|||.. .|..|++||..||+||+.||+.++.+.++..++
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~ 58 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ 58 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999963 578999999999999999999888777655543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.77 E-value=3.4e-05 Score=68.30 Aligned_cols=47 Identities=26% Similarity=0.409 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC---CCCcchhhHHHHHHHHHHHHHHHHH
Q 005651 509 AERQRREKLNQRFYALRAVVPN---VSKMDKASLLGDAISYINELRTKLQ 555 (685)
Q Consensus 509 aER~RRekLn~~f~~LRsLVP~---~sK~dKaSIL~dAI~YIk~Lq~kv~ 555 (685)
.||.|=..||+.|..||.+||. ..|..|..+|.-||+||..|++-++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 3577778999999999999997 4688999999999999999998665
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.61 E-value=0.022 Score=48.07 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=57.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHh
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKV 681 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l 681 (685)
.+.|+|.|++++|.+.+|...|-+.+..|.+.+.....+.+...+.+.+.+ ....++|.++|.+.-
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~-~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE-KQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-CCCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC-CCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999988888888888887755 457889999887643
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.39 E-value=0.06 Score=52.03 Aligned_cols=66 Identities=3% Similarity=0.048 Sum_probs=55.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
.+.|.|.|++++|++++|..+|.+.|+.|+.+++....+.++..+.+.... ...++|+++|.+..+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~--~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP--SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH--HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC--CCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998888777787776543 356788888876554
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.68 E-value=0.093 Score=51.20 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=50.7
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcc--cCHHHHHHHHHH
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRF--YTQEQLKNVLAA 679 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~--~t~e~L~aaL~~ 679 (685)
.+.|.|.|+.++|++++|..+|.++|+.|+.+++.+..+.+...+.+...... ...++|+++|..
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~ 71 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPG 71 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHH
Confidence 47899999999999999999999999999999999888876667777654221 014556665543
No 22
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=94.06 E-value=0.03 Score=53.98 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=55.0
Q ss_pred eecccCCCCCCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC------ceEeeccccc---cc
Q 005651 172 QSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN------GVVELGSTEV---II 242 (685)
Q Consensus 172 ~sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~------GVvELGSt~~---I~ 242 (685)
..|+ .|+|+.|+|+.+|+++.|.+....... ++..++++.++|||+.. |||++.+.+. -.
T Consensus 92 ~~i~-----~g~Gi~G~aa~~g~~v~v~Dv~~dp~~------~~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~ 160 (180)
T 1f5m_A 92 QMIQ-----FGKGVCGTAASTKETQIVPDVNKYPGH------IACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDH 160 (180)
T ss_dssp SEEE-----TTSHHHHHHHHHTSCEEESCGGGSTTC------CCSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCH
T ss_pred eeec-----CCCcchhhhhhcCCEEEeCCcccCccc------cccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCH
Confidence 3577 999999999999999999976543322 24457899999999655 9999999754 34
Q ss_pred cChHHHHHHHHhc
Q 005651 243 QNSDLMNKVRFLF 255 (685)
Q Consensus 243 E~~~lv~~ik~~F 255 (685)
+|..+++.+-...
T Consensus 161 ~d~~~L~~la~~~ 173 (180)
T 1f5m_A 161 VDKEFLEKLAKLI 173 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667777666554
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.02 E-value=0.16 Score=49.45 Aligned_cols=66 Identities=6% Similarity=0.040 Sum_probs=54.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC------CEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN------DLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~------d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
.++|.|.|+.++|++.+|-..|-++|+.|..++..+.. +.++..+.+.++. ..+ ++|+++|.....
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~-~~~-~~l~~~l~~~a~ 164 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF-PLY-QEVVTALSRVEE 164 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG-GGH-HHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC-Ccc-HHHHHHHHHHHH
Confidence 46899999999999999999999999999999998775 6666667666543 335 889998886544
No 24
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=93.85 E-value=0.11 Score=46.50 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=48.6
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeecccccc---ccChHHHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEVI---IQNSDLMNKVR 252 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~I---~E~~~lv~~ik 252 (685)
.|.|+.|+++.+++++++.+..... .+.........|++.++|||+.. |||.+++.+.- .++.++++.+-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~~~f~~~d~~~l~~la 152 (171)
T 3trc_A 75 FGEGLIGLVGEREEPINLADAPLHP--AYKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQLESHHFAEEEEAFCVTLA 152 (171)
T ss_dssp TTCHHHHHHHHHTSCEEESCGGGST--TCCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEESSSCCCCHHHHHHHHHHH
T ss_pred CCCChhhHHHhcCCeEEeCCCCCCC--cccccccCCcccccEEEEEeEEECCEEEEEEEEeecCCCCCCHHHHHHHHHHH
Confidence 8889999999999999997654321 12111222457999999999533 89999987542 24455555544
Q ss_pred Hh
Q 005651 253 FL 254 (685)
Q Consensus 253 ~~ 254 (685)
..
T Consensus 153 ~~ 154 (171)
T 3trc_A 153 IH 154 (171)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 25
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=93.52 E-value=0.75 Score=41.55 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=47.5
Q ss_pred CCCCcccceecCCCceEecCCCccC-CCCCc-cc--hhhhhcCCcEEEEeecCC-----ceEeecccccc---ccChHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLA-NSGCD-RA--RQGQVFGLQTLVCIPSAN-----GVVELGSTEVI---IQNSDLM 248 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~-~~~~~-R~--~lA~~aGIqTivcIP~~~-----GVvELGSt~~I---~E~~~lv 248 (685)
.+.|+.|+++.++.++.+ +....+ ...+. +. ......|++.++|||+.. |||.+++.+.- .++..|+
T Consensus 75 ~~~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~~~f~~~d~~ll 153 (177)
T 3k2n_A 75 IAGTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVSAEEKLWSDGDKSLL 153 (177)
T ss_dssp CTTSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHH
T ss_pred ccccHHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHH
Confidence 778999999999999998 443322 22222 22 134568999999999533 89999986542 2444555
Q ss_pred HHHHH
Q 005651 249 NKVRF 253 (685)
Q Consensus 249 ~~ik~ 253 (685)
+.+-.
T Consensus 154 ~~lA~ 158 (177)
T 3k2n_A 154 SGVSS 158 (177)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 26
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.34 E-value=0.54 Score=45.25 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=54.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC--------CEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN--------DLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~--------d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
...|.|.|+.++|++.+|.+.|.+.+++|..+...+.. +.++..+.+..+. ..+.++|+++|.....
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~-~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999887654 3566666666553 5588999999987554
No 27
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=93.24 E-value=0.11 Score=46.78 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=46.9
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeecccccc---ccChHHHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEVI---IQNSDLMNKVR 252 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~I---~E~~~lv~~ik 252 (685)
.|.|+.|+++.+|+++++.+..... .+.........|++.++|||+.. |||.+++.+.- .++.++++.+-
T Consensus 80 ~~~~~~~~~~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~~l~~la 157 (181)
T 3e0y_A 80 IGDGITGSVARDGQYISLSRASQDP--RYRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVSIIA 157 (181)
T ss_dssp TTTSSHHHHHHHCCCEEEEEECCCC--CC---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred CCCCeeeehhhcCCeEEecCcccCc--cccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 8899999999999999997644322 12212223457999999999543 89999988632 34555666555
Q ss_pred Hhc
Q 005651 253 FLF 255 (685)
Q Consensus 253 ~~F 255 (685)
..+
T Consensus 158 ~~~ 160 (181)
T 3e0y_A 158 NLI 160 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 28
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=92.65 E-value=0.39 Score=39.69 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=41.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeC
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMG 664 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg 664 (685)
.+.|+|.+.+++|.|.+|..+|.+.++.|.+.++...++.+...+.+.+.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 45789999999999999999999999999999998877644445555554
No 29
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=91.97 E-value=0.059 Score=50.82 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=53.0
Q ss_pred ecccCCCCCCCCcccceecCCCceEecCCCccCCCCCccch-hhhhcCCcEEEEeecCC-----ceEeecccccc----c
Q 005651 173 SFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRAR-QGQVFGLQTLVCIPSAN-----GVVELGSTEVI----I 242 (685)
Q Consensus 173 sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~-lA~~aGIqTivcIP~~~-----GVvELGSt~~I----~ 242 (685)
.++ .|+|+.|+++.+|+++.+.+..... .|.+.. ...-+.++.++|||+.. |||+|.+...- .
T Consensus 82 ~~~-----~~~gi~g~v~~tg~~v~i~d~~~d~--~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~ 154 (180)
T 3dba_A 82 VFP-----LDIGIAGWVAHTKKFFNIPDVKKNN--HFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSK 154 (180)
T ss_dssp EEC-----TTSSHHHHHHHHTCCEEESCGGGCT--TCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCH
T ss_pred eee-----CCCCHHHHHHHhCCEEEecCCCCCc--ccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCH
Confidence 567 8999999999999999998755432 232221 12234679999999543 99999886532 3
Q ss_pred cChHHHHHHHHhc
Q 005651 243 QNSDLMNKVRFLF 255 (685)
Q Consensus 243 E~~~lv~~ik~~F 255 (685)
+|..+++.+-...
T Consensus 155 ~d~~lL~~lA~~a 167 (180)
T 3dba_A 155 EDEEVFKKYLNFI 167 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667777666554
No 30
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=91.96 E-value=0.2 Score=44.19 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=44.7
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeecccccc---ccChHHHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEVI---IQNSDLMNKVR 252 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~I---~E~~~lv~~ik 252 (685)
.+.|+.|+++.+++++++.+..... .+.........|++.++|||+.. |||.+++.+.- .++..+++.+-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la 154 (171)
T 3ci6_A 77 LSEGLVGLVGQREEIVNLENASKHE--RFAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQPQDFSEAAESFLVTLC 154 (171)
T ss_dssp TTSHHHHHHHHHTSCEEESSGGGST--TC---------CCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred ccCCeehhhhccCceEEecCCCcCc--chhccccccccccceEEEEeEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 7788999999999999998644322 12111122557899999999532 89999988542 23445555544
Q ss_pred Hh
Q 005651 253 FL 254 (685)
Q Consensus 253 ~~ 254 (685)
..
T Consensus 155 ~~ 156 (171)
T 3ci6_A 155 AQ 156 (171)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 31
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=91.65 E-value=0.039 Score=50.67 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=53.4
Q ss_pred eecccCCCCCCCCcccceecCCCceEecCCCccCCCCCccc-hhhhhcCCcEEEEeecCC-----ceEeecccccc----
Q 005651 172 QSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRA-RQGQVFGLQTLVCIPSAN-----GVVELGSTEVI---- 241 (685)
Q Consensus 172 ~sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~-~lA~~aGIqTivcIP~~~-----GVvELGSt~~I---- 241 (685)
..|+ .|.|+.|+++.+|+++++.+..... .+.+. ......+++.++|||+.. |||.|++...-
T Consensus 84 ~~~~-----~~~~~~~~v~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~ 156 (189)
T 2e4s_A 84 IRFS-----IEKGIAGQVARTGEVLNIPDAYADP--RFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFS 156 (189)
T ss_dssp CEEE-----TTSHHHHHHHHHCCCEEESCGGGST--TCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCC
T ss_pred eEee-----CCCcHHHHHHHhCCEEEecCCCcCc--ccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCC
Confidence 4567 8899999999999999998654322 22222 222347899999999532 89999987643
Q ss_pred ccChHHHHHHHHhc
Q 005651 242 IQNSDLMNKVRFLF 255 (685)
Q Consensus 242 ~E~~~lv~~ik~~F 255 (685)
.+|..|++.+-...
T Consensus 157 ~~d~~ll~~la~~~ 170 (189)
T 2e4s_A 157 KTDENNFKMFAVFC 170 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35666666655443
No 32
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=91.54 E-value=0.46 Score=42.29 Aligned_cols=73 Identities=10% Similarity=0.083 Sum_probs=49.9
Q ss_pred CCCcccceecCCCceEecCCCccCCCCCccc--hhhhhcCCcEEEEeecCC-----ceEeeccccc----cccChHHHHH
Q 005651 182 GGGLPGQAYFGNSPVWVSGAERLANSGCDRA--RQGQVFGLQTLVCIPSAN-----GVVELGSTEV----IIQNSDLMNK 250 (685)
Q Consensus 182 G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~--~lA~~aGIqTivcIP~~~-----GVvELGSt~~----I~E~~~lv~~ 250 (685)
|.|+.|+++.+++++++.+..........+. ......|++.++|||+.. |||.+++... =.+|.++++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~~f~~~d~~~l~~ 151 (169)
T 3oov_A 72 RGGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSRRSLNDTDVDTIKL 151 (169)
T ss_dssp GGHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSSSCCCHHHHHHHHH
T ss_pred ccchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEccccCCCCCHHHHHHHHH
Confidence 7899999999999999986554332222221 234457999999999533 9999998643 2355566665
Q ss_pred HHHh
Q 005651 251 VRFL 254 (685)
Q Consensus 251 ik~~ 254 (685)
+-..
T Consensus 152 ~a~~ 155 (169)
T 3oov_A 152 FADQ 155 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 33
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=91.44 E-value=0.11 Score=51.08 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=54.8
Q ss_pred ecccCCCCCCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeeccccc---cccC
Q 005651 173 SFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEV---IIQN 244 (685)
Q Consensus 173 sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~---I~E~ 244 (685)
.|+ .|+|+.|+|+.+|+++.|.+......+ ++...+.+.++|||+.. |||++.|.+. -.+|
T Consensus 88 ~i~-----~GeGi~G~aa~tg~~i~V~Dv~~~p~~------~~~~~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d 156 (195)
T 1vhm_A 88 RIP-----VGRGVCGTAVARNQVQRIEDVHVFDGH------IACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDED 156 (195)
T ss_dssp EEE-----TTSHHHHHHHHHTSCEEESCTTTCTTC------CCSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHH
T ss_pred Eec-----CCCChHHHHHhcCCEEEECCcccCcch------hhcCCCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHH
Confidence 577 999999999999999999987653221 22345789999999532 9999999764 2456
Q ss_pred hHHHHHHHHhcc
Q 005651 245 SDLMNKVRFLFN 256 (685)
Q Consensus 245 ~~lv~~ik~~F~ 256 (685)
..+++.+-....
T Consensus 157 ~~~L~~lA~~ia 168 (195)
T 1vhm_A 157 EQGLRQLVAQLE 168 (195)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766654
No 34
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=90.78 E-value=0.63 Score=49.79 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=57.6
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
..++|.|.|+.++|+...|...|-+.|..|+.++-....+.+...+.+.+.....+.++|+++|...
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~ 77 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAA 77 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999888888887755444668888888754
No 35
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=90.65 E-value=0.12 Score=49.51 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=53.2
Q ss_pred ecccCCCCCCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeecccccc---ccC
Q 005651 173 SFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEVI---IQN 244 (685)
Q Consensus 173 sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~I---~E~ 244 (685)
.|+ .|+|+.|+|+.+|+++.+.+.+....+ ++...+++..+|||+.. |||.+.|.+.- .+|
T Consensus 77 ~i~-----~geGi~G~v~~~g~~~~v~Dv~~~p~~------~~~~~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d 145 (167)
T 3mmh_A 77 RIP-----FGRGVCGQAWAKGGTVVVGDVDAHPDH------IACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETD 145 (167)
T ss_dssp EEE-----TTSHHHHHHHHHTSCEEESCGGGSTTC------CCSSTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHH
T ss_pred Eec-----cCCChHHHHHhCCcEEEECCcccCcch------hhcCccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHH
Confidence 577 999999999999999999987654322 22246789999999532 89999986532 356
Q ss_pred hHHHHHHHHhc
Q 005651 245 SDLMNKVRFLF 255 (685)
Q Consensus 245 ~~lv~~ik~~F 255 (685)
..+++.+-...
T Consensus 146 ~~~L~~lA~~l 156 (167)
T 3mmh_A 146 ALYLGELAKIL 156 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777665554
No 36
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=90.21 E-value=0.18 Score=46.33 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=39.8
Q ss_pred ecccCCCCCCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeeccc
Q 005651 173 SFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGST 238 (685)
Q Consensus 173 sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt 238 (685)
.|+ .|+|+.|+++.+|+++++.+..... |++.++|||+.. |||.|.+.
T Consensus 55 ~~~-----~~~g~~g~v~~~g~~v~v~d~~~d~-------------~~~s~l~vPL~~~~~~~GvL~l~~~ 107 (149)
T 2vjw_A 55 AIP-----VQDNAIGQAFRDRAPRRLDVLDGPG-------------LGGPALVLPLRATDTVAGVLVAVQG 107 (149)
T ss_dssp EEE-----SSSSHHHHHHHHCCCEEESCCCTTS-------------CEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccC-----CCCCHHHHHhhcCceEEecCcccCC-------------CCCeEEEEEEccCCeEEEEEEEeeC
Confidence 567 8899999999999999998754221 789999999543 99999886
No 37
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=90.04 E-value=1.5 Score=46.03 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=55.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV--NDLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~--~d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
.++|.|.|++++|...+|-..|-+.|+.|++++-... .+.++..+.+.......+.++|+++|...
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPI 89 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999998865 67777777766644457899999988653
No 38
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=89.79 E-value=1.4 Score=45.82 Aligned_cols=67 Identities=6% Similarity=0.050 Sum_probs=56.0
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEE--eCCEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSV--VNDLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~--~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
..+.|.|.|++++|...+|-..|-+.|+.|.+++... ..+.++..+.+.++....+.++|+++|...
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~l 73 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVI 73 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999998753 457777777777765567899999988654
No 39
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=89.54 E-value=1.2 Score=40.43 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=50.6
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeec------CCceEeecc-ccc---cccChHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPS------ANGVVELGS-TEV---IIQNSDLMNK 250 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~------~~GVvELGS-t~~---I~E~~~lv~~ 250 (685)
.|+|+.|+++.+|+++.+.+...... ... .......|++.++|||+ .-|||.+.+ ... =.++..+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~-~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~ 147 (181)
T 2qyb_A 70 EIETYIGEAFLSNRLQFVNDTQYMTK-PLT-RELMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLES 147 (181)
T ss_dssp CTTSHHHHHHHHTSCEEESCGGGCSC-HHH-HHHHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHH
T ss_pred CCCCchhhhhhcCCCEEecChhcCCc-hhh-HHHHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 47899999999999999976543221 111 11234579999999995 348999998 443 2356667777
Q ss_pred HHHhcc
Q 005651 251 VRFLFN 256 (685)
Q Consensus 251 ik~~F~ 256 (685)
+-..+.
T Consensus 148 la~~~a 153 (181)
T 2qyb_A 148 LAGQLA 153 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 40
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=89.18 E-value=1.7 Score=45.15 Aligned_cols=66 Identities=8% Similarity=-0.018 Sum_probs=54.8
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEE--eCCEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSV--VNDLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~--~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
..+.|.|.|++++|...+|-..|-+.++.|.+++-.. ..+.++..+.+..+. ..+.++|+++|...
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~L~~~f~~l 74 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-DFDEAGFRAGLAER 74 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-SCCHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-CCCHHHHHHHHHHH
Confidence 3478999999999999999999999999999999873 457777667776644 57899999988754
No 41
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=87.90 E-value=0.45 Score=45.91 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=56.4
Q ss_pred eecccCCCCCCCCcccceecCCCceEecCCCccCCC-CCccchhhhhcCCcEEEEeecCC-----ceEeeccccc---cc
Q 005651 172 QSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANS-GCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEV---II 242 (685)
Q Consensus 172 ~sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~-~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~---I~ 242 (685)
..++ .|+|+.|+|+.+|+++-|.+.+....+ .| ..+.+..+|||+.. |||.+.|.+. =.
T Consensus 76 ~ri~-----~GeGv~G~va~tg~~i~V~Dv~~~p~~i~~-------~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e 143 (171)
T 3rfb_A 76 IRIA-----LGKGVCGEAAHFQETVIVGDVTTYLNYISC-------DSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDA 143 (171)
T ss_dssp CEEE-----TTSHHHHHHHHTTSCEEESCTTSCSSCCCS-------CTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCH
T ss_pred eEee-----CCcCHHHHHHhhCCEEEECCcccCcccccc-------CcccCceEEEEEEECCEEEEEEEEecCCCCCCCH
Confidence 3577 999999999999999999988765433 23 34578899999532 9999999643 24
Q ss_pred cChHHHHHHHHhcc
Q 005651 243 QNSDLMNKVRFLFN 256 (685)
Q Consensus 243 E~~~lv~~ik~~F~ 256 (685)
+|..+++.+-....
T Consensus 144 ~D~~~L~~lA~~la 157 (171)
T 3rfb_A 144 MDRDYLEQFVAILL 157 (171)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888888775
No 42
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=87.85 E-value=0.59 Score=41.38 Aligned_cols=70 Identities=10% Similarity=-0.024 Sum_probs=44.1
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCc-cchhhhhcCCcEEEEeecCC-----ceEeeccccccc---cChHHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCD-RARQGQVFGLQTLVCIPSAN-----GVVELGSTEVII---QNSDLMNKV 251 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~-R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~I~---E~~~lv~~i 251 (685)
.|.|..|+++.+|+++++.+..... .+. ....+...||+.++|||+.. |||.+.+.+.-. ++..|++.+
T Consensus 52 ~~~~~~~~~~~~~~~~~i~d~~~~~--~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~ll~~~ 129 (151)
T 3hcy_A 52 DGHSPWITGANEPEPIFVENVDDAE--FSRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPHRFADSEIGMALTI 129 (151)
T ss_dssp CBCCSCC---CCCCCEEESCGGGSC--CCHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSCCCCCHHHHHHHHHH
T ss_pred cCCCchhhhhhcCCcEEEeChhhCc--ccchhHHHHHhcCchheEEeceEECCEEEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 6778999999999999998654321 121 11245568999999999533 889988764322 344444444
Q ss_pred H
Q 005651 252 R 252 (685)
Q Consensus 252 k 252 (685)
-
T Consensus 130 a 130 (151)
T 3hcy_A 130 A 130 (151)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=87.71 E-value=0.31 Score=46.46 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=53.5
Q ss_pred eecccCCCCCCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeecccccc---cc
Q 005651 172 QSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEVI---IQ 243 (685)
Q Consensus 172 ~sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~I---~E 243 (685)
..++ .|+|+.|+|+.+|+++-|.+.+....+ ++...+.+..+|||+.. |||.+.|.+.- .+
T Consensus 75 ~ri~-----~GeGv~G~aa~~~~~i~V~Dv~~~p~~------i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~ 143 (160)
T 3ksh_A 75 VHIP-----IGKGVCGTAVSERRTQVVADVHQFKGH------IACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDN 143 (160)
T ss_dssp SEEE-----TTSHHHHHHHHHTSCEEESCGGGSTTC------CGGGTTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHH
T ss_pred EEee-----CCCCHHHHHHhhCCEEEECCcccCccc------cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHH
Confidence 3677 999999999999999999987754432 22345678999999532 89999996432 35
Q ss_pred ChHHHHHHHHhc
Q 005651 244 NSDLMNKVRFLF 255 (685)
Q Consensus 244 ~~~lv~~ik~~F 255 (685)
|..+++.+-...
T Consensus 144 D~~~L~~lA~~l 155 (160)
T 3ksh_A 144 DKEHLEAIVKII 155 (160)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666777665543
No 44
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=87.66 E-value=0.46 Score=41.43 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=48.3
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeeccccc----cccChHHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEV----IIQNSDLMNKV 251 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~----I~E~~~lv~~i 251 (685)
.+.|+.|+++.+++++++.+...... +.. ......|++.++|||+.. |||.+++... -.++.++++.+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~-~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~l 135 (153)
T 2w3g_A 59 KGLGVIGLLIEDPKPLRLDDVSAHPA--SIG-FPPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEVLVQAL 135 (153)
T ss_dssp CSCTHHHHHHHSCSCEEESSGGGSTT--CCC-CCTTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHhcCCcEEecCcccCch--hcC-CCCcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHHHHHHH
Confidence 78899999999999999986433211 111 111457899999999533 8999998765 23455556555
Q ss_pred HHh
Q 005651 252 RFL 254 (685)
Q Consensus 252 k~~ 254 (685)
-..
T Consensus 136 a~~ 138 (153)
T 2w3g_A 136 AAA 138 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 45
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=87.29 E-value=2.3 Score=44.34 Aligned_cols=67 Identities=6% Similarity=0.072 Sum_probs=52.9
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEE--eCCEEEEEEEEEeC--CcccCHHHHHHHHHHH
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSV--VNDLMIQQATVKMG--SRFYTQEQLKNVLAAK 680 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~--~~d~vl~ti~VKvg--~~~~t~e~L~aaL~~~ 680 (685)
..+.|.|.|++++|...+|-..|-+.|+.|.+++-.. ..+.++..+.+... ....+.++|+++|...
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI 79 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999874 45666666666554 3357889999988653
No 46
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=87.03 E-value=2.7 Score=33.98 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 510 ERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 510 ER~RRekLn~~f~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
||++|.....+..+.++= ..-.+||.+|+.+++.|+.++..|..++..+..+.
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888887762 23467899999999999999988888887766543
No 47
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=79.16 E-value=8.3 Score=39.96 Aligned_cols=65 Identities=5% Similarity=0.009 Sum_probs=49.6
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE--EeCCEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 614 WDAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMS--VVNDLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 614 ~ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS--~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
..++|.|.|+.++|+..+|-..|-+.|+.|++++.. ...+.++..+.+.... .+.++|+++|...
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~L~~~f~~l 72 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV--AGVNDFNSAFGKV 72 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-----CHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC--CCHHHHHHHHHHH
Confidence 357899999999999999999999999999999886 3456776666665533 2345888887643
No 48
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=78.21 E-value=2.7 Score=40.22 Aligned_cols=63 Identities=8% Similarity=0.144 Sum_probs=47.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 616 AMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN--DLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 616 a~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~--d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
-.|.|...+++|.|.+|...|.+.|+.|.+.++.... +....+|++. ++ ....++|...|.+.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d-~~~leqI~kqL~Kl 68 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD-EKVLEQIEKQLHKL 68 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC-HHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc-HHHHHHHHHHHcCC
Confidence 3688889999999999999999999999999987654 4555666765 33 33445666665543
No 49
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=78.00 E-value=0.98 Score=40.90 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=49.0
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeeccccc----cccChHHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEV----IIQNSDLMNKV 251 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~----I~E~~~lv~~i 251 (685)
.|.|+.|+++.+|+++++.+....... ..........+++.++|||+.. |||.+..... =.+|.+|++.+
T Consensus 88 ~~~~~~~~v~~~~~~~~i~d~~~~~~~-~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~~ll~~l 166 (189)
T 2zmf_A 88 IEKGIAGQVARTGEVLNIPDAYADPRF-NREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENNFKMF 166 (189)
T ss_dssp TTSHHHHHHHHHCCCEEESCGGGSTTC-CTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHHHHHH
T ss_pred CCccHHHHHHHhCCeEEEecccccccc-cccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHHHHHHHH
Confidence 889999999999999999875543222 2223344457899999999532 7888864432 23456666665
Q ss_pred HHh
Q 005651 252 RFL 254 (685)
Q Consensus 252 k~~ 254 (685)
-..
T Consensus 167 A~q 169 (189)
T 2zmf_A 167 AVF 169 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 50
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.55 E-value=4.5 Score=30.32 Aligned_cols=30 Identities=23% Similarity=0.630 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005651 545 SYINELRTKLQSAESDKEDLQKELASVKKE 574 (685)
Q Consensus 545 ~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~ 574 (685)
.|+.+|+.++++|+.+..+|+.++..+..+
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999888877666544
No 51
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=75.43 E-value=1.4 Score=50.43 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=49.1
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeec--C-C---ceEeecccccc----ccChHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPS--A-N---GVVELGSTEVI----IQNSDLMNK 250 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~--~-~---GVvELGSt~~I----~E~~~lv~~ 250 (685)
.|.|+.|+++.+|+++.+.+........+..... .-++++.++|||+ . + |||.+.+...- .+|..+++.
T Consensus 248 ~~~gi~g~v~~~g~~v~i~d~~~d~~~~~~~~~~-~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~~ll~~ 326 (691)
T 3ibj_A 248 ADQGIAGHVATTGQILNIPDAYAHPLFYRGVDDS-TGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATA 326 (691)
T ss_dssp TTSHHHHHHHHHCSCEEESCSTTSTTC------C-CSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTTHHHHH
T ss_pred CCCCHHHHHHHhCCEEEecCcccCccccchhhcc-cCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHH
Confidence 7889999999999999998765433222211111 1256999999994 3 2 89999876543 467777766
Q ss_pred HHHhc
Q 005651 251 VRFLF 255 (685)
Q Consensus 251 ik~~F 255 (685)
+-...
T Consensus 327 lA~~~ 331 (691)
T 3ibj_A 327 FSIYC 331 (691)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 52
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=74.44 E-value=4.5 Score=31.94 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 545 SYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 545 ~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
.||.+|+.++..|+.+...|..++..+...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999988776543
No 53
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=73.06 E-value=3 Score=40.01 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=47.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 616 AMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN--DLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 616 a~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~--d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
-.|.|...+++|.|.+|...|.+.|+.|.+.++.... +....+|++. ++ ....++|...|.+.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~d-~~~leql~kQL~Kl 69 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-GP-DEIVEQITKQLNKL 69 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-EC-HHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-cc-HHHHHHHHHHhcCC
Confidence 3688888999999999999999999999999987654 4555666665 22 34456666666543
No 54
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=72.28 E-value=5.4 Score=39.31 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=48.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCC--EEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 616 AMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVND--LMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 616 a~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d--~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
-.|.|..++++|.|.+|...|...|+.|.+..+....+ ....+|+|.- .....++|++.|.+.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g--~e~~ieqL~kQL~KL 94 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG--DDKTIEQIEKQAYKL 94 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE--CTTHHHHHHHHHTTS
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC--CHHHHHHHHHHhcCc
Confidence 46888889999999999999999999999999876544 4445566542 245667777777653
No 55
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=68.89 E-value=11 Score=34.54 Aligned_cols=35 Identities=6% Similarity=0.134 Sum_probs=32.5
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEe
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVV 651 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~ 651 (685)
-|+|.|.++.|++.+|+++|-+.++++..+++...
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 37899999999999999999999999999999665
No 56
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=68.41 E-value=8.9 Score=27.79 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+++|+.||++|-.++..|+.++..++..+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 68999999999999999988888776654
No 57
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=68.35 E-value=1.9 Score=45.03 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=40.2
Q ss_pred CCCCcccceecCCCceEec-CCCccCCCCCccchhhh--hcCCcEEEEeecCC------ceEeecccc
Q 005651 181 GGGGLPGQAYFGNSPVWVS-GAERLANSGCDRARQGQ--VFGLQTLVCIPSAN------GVVELGSTE 239 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~-~~~~~~~~~~~R~~lA~--~aGIqTivcIP~~~------GVvELGSt~ 239 (685)
.|.|+.|+++.+|+++++. +........+.+. ... .++++.++|||+.+ |||.+.+..
T Consensus 265 ~~~~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~-~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 265 IGKGFAGIVAASGQKLNIPFDLYDHPDSATAKQ-IDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp TTSHHHHHHHHHCCCEEECSCGGGSTTCHHHHH-HHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred CCCchhhHHhccCCeEEeccccccCcccCcccc-hhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 7899999999999999998 6443222111111 122 24578899999753 899998876
No 58
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=68.31 E-value=3.4 Score=42.20 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=48.6
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhh-hhcCCcEEEEeecCC------ceEeecccccc----ccChHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQG-QVFGLQTLVCIPSAN------GVVELGSTEVI----IQNSDLMN 249 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA-~~aGIqTivcIP~~~------GVvELGSt~~I----~E~~~lv~ 249 (685)
.|.|+.|+++.+|+++++.+...... +.+.... .-+.++.++|||+.. |||.+++...- .+|.+|++
T Consensus 248 ~~~~~~~~~~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~~ll~ 325 (368)
T 1mc0_A 248 ADQGIAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLAT 325 (368)
T ss_dssp TTSHHHHHHHHHCCCEEESCSTTCTT--CCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHHHHHH
T ss_pred CCCceeeeehhhCCEEEecCcccCcc--cchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHHHHHH
Confidence 78899999999999999987654322 2222111 112359999999532 89999987653 35566666
Q ss_pred HHHHhc
Q 005651 250 KVRFLF 255 (685)
Q Consensus 250 ~ik~~F 255 (685)
.+-...
T Consensus 326 ~la~~~ 331 (368)
T 1mc0_A 326 AFSIYC 331 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 59
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=67.62 E-value=5.1 Score=37.46 Aligned_cols=73 Identities=14% Similarity=0.228 Sum_probs=49.4
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeecccccc---ccChHHHHHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEVI---IQNSDLMNKVR 252 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~I---~E~~~lv~~ik 252 (685)
.+.++.|+++.+|+++=+. .......++. ...+...|++.++|||+.. |||-|++...- .+|..+++.+-
T Consensus 57 ~~~s~~~~v~~~~~~~v~~-~~~~~~~~~~-~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l~~la 134 (165)
T 3o5y_A 57 KEQSLYWSALDQRQTIFRS-LTDTQDNFYE-KQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFLEQLT 134 (165)
T ss_dssp STTCHHHHHHHHTSCEEEE-SCCTTCCCTT-HHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHhCCeEEEc-Cccccccccc-chHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence 6678999999999998543 2222222222 3445678999999999532 89999997643 35666777766
Q ss_pred Hhc
Q 005651 253 FLF 255 (685)
Q Consensus 253 ~~F 255 (685)
...
T Consensus 135 ~~~ 137 (165)
T 3o5y_A 135 DHL 137 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 60
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=65.13 E-value=9.6 Score=30.50 Aligned_cols=33 Identities=12% Similarity=0.335 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 543 AISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 543 AI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
-.+||.+|+.+++.|+.++..|..++..+..+.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999888887765
No 61
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=65.12 E-value=5.6 Score=36.31 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=39.8
Q ss_pred CCCcccc----eecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeecccc
Q 005651 182 GGGLPGQ----AYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTE 239 (685)
Q Consensus 182 G~GlpGk----a~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~ 239 (685)
.+|..|. ++.+|+++.+.+........|.+..+ ...|++.++|||+.. |||.+-+..
T Consensus 77 ~~~~~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~-~~~~~~s~l~vPi~~~~~l~G~l~~~~~~ 142 (172)
T 2k2n_A 77 EAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYL-KSMGVASSLVVPLMHHQELWGLLVSHHAE 142 (172)
T ss_dssp GGCCCCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHH-HTTTCSEEEECCCSCSSCCCEEEEEEECS
T ss_pred cccccccccccccccCCceeccchhhcCCCHHHHHHH-HhcCCeEEEEEEEEECCEEEEEEEEEeCC
Confidence 4566565 49999999998765444433433333 368999999999533 899988764
No 62
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=64.54 E-value=8.8 Score=31.06 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 544 ISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 544 I~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
..||.+|+.+++.|+.++..|..++..++..+
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999888887654
No 63
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=64.00 E-value=15 Score=36.96 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=43.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeC-----CEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVN-----DLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~-----d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
.+-|.|.+.+++|+|.+|+..|-+.+..|.+.+..... +...-+ +++.+. ..++|...|.+
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~--~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG--DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS--CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC--CHHHHHHHHhC
Confidence 45688999999999999999999999999999998864 343333 666544 77777776653
No 64
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=63.51 E-value=11 Score=30.06 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 543 AISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 543 AI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
--.||.+|+.+++.|+.+...|..++..+..++
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999998888888877776554
No 65
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=62.83 E-value=15 Score=26.18 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+++|+.||++|-.++..|..++..++.-+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 57899999999999999998888777654
No 66
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=62.47 E-value=9.5 Score=27.63 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+++|+.||++|..++..|+.++..++..+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 57899999999999999998888777654
No 67
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=62.41 E-value=16 Score=26.17 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+.+|+.||++|-.++..|+.+++.++.-+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 67899999999999999999888877654
No 68
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=61.33 E-value=2.1 Score=39.48 Aligned_cols=70 Identities=20% Similarity=0.121 Sum_probs=45.7
Q ss_pred CCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeecccccc---ccChHHHHHHHH
Q 005651 182 GGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEVI---IQNSDLMNKVRF 253 (685)
Q Consensus 182 G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~I---~E~~~lv~~ik~ 253 (685)
+.|+.|+++.+|+++.+.+..... .++. .......|++.++|||+.. |||.+.+...- .+|.+|++.|-.
T Consensus 94 ~~~~~~~~~~~~~~~~i~d~~~~~-~~~~-~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~ 171 (184)
T 3p01_A 94 QDPLTNEAIATGQIQVAANIAKDP-KLAS-ISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELTLIHLSAQ 171 (184)
T ss_dssp GCHHHHHHHHHCSCEEESCGGGCH-HHHT-CHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHhhCCeEEEeccccCc-cccc-hhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHHHHHHHHH
Confidence 368889999999999987644322 2222 2233456999999999532 89999765432 345556655544
No 69
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=61.26 E-value=15 Score=26.12 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+++|+.|+++|-.++..|+.++..++.-+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57899999999999999998888777654
No 70
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=60.10 E-value=2.6 Score=43.13 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=50.1
Q ss_pred eecccCCCCCCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeec-CC------ceEeeccccc----
Q 005651 172 QSFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPS-AN------GVVELGSTEV---- 240 (685)
Q Consensus 172 ~sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~-~~------GVvELGSt~~---- 240 (685)
..|+ .|.|+.|+++.+|+++++.+...... + ......-++++.++|||+ .+ |||.+.+...
T Consensus 74 ~~~~-----~~~g~~g~~~~~~~~~~i~d~~~~~~--~-~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f 145 (368)
T 1mc0_A 74 VSFP-----LTMGRLGQVVEDKQCIQLKDLTSDDV--Q-QLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFF 145 (368)
T ss_dssp EEEE-----SSSSSHHHHHHHCCCEEGGGSCHHHH--H-HHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSC
T ss_pred eeec-----cccCHHHHHHhcCCeEEecccccccc--c-ccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCC
Confidence 3577 89999999999999999986543211 1 111223457899999994 32 8999876543
Q ss_pred cccChHHHHHHHHhc
Q 005651 241 IIQNSDLMNKVRFLF 255 (685)
Q Consensus 241 I~E~~~lv~~ik~~F 255 (685)
-.+|..+++.+-..+
T Consensus 146 ~~~d~~~l~~la~~~ 160 (368)
T 1mc0_A 146 TDEDEHVIQHCFHYT 160 (368)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 234556666554444
No 71
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=58.56 E-value=7.2 Score=36.59 Aligned_cols=74 Identities=8% Similarity=0.042 Sum_probs=48.2
Q ss_pred CCCCcccc----eecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC-----ceEeecccccc---ccChHHH
Q 005651 181 GGGGLPGQ----AYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN-----GVVELGSTEVI---IQNSDLM 248 (685)
Q Consensus 181 ~G~GlpGk----a~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~-----GVvELGSt~~I---~E~~~lv 248 (685)
.++|..|. ++.+|+++-+.+........|.+..+ ...|++.++|||+.. |||.+.+...- .++.+|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l-~~~~~~S~l~vPi~~~~~l~GvL~~~~~~~~~~~~~e~~ll 184 (208)
T 2lb5_A 106 VEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYL-KSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVV 184 (208)
T ss_dssp GGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHH-HHTTCSEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhccCCHHHHHHH-HhcCCcEEEEEEEEECCEeEEEEEEeeCCCCCCCHHHHHHH
Confidence 44566555 79999999887655433333444444 368999999999532 89999887432 2345566
Q ss_pred HHHHHhc
Q 005651 249 NKVRFLF 255 (685)
Q Consensus 249 ~~ik~~F 255 (685)
+.|-..+
T Consensus 185 ~~la~~~ 191 (208)
T 2lb5_A 185 QLLADQV 191 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 72
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=58.40 E-value=11 Score=26.80 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+.+|+.||++|-.++..|+.++..++.-+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 46899999999999999999888877654
No 73
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=57.88 E-value=19 Score=25.79 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+++|+.|+++|-.++..|+.++..++.-+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 67899999999999999998888777654
No 74
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=55.77 E-value=21 Score=26.14 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=27.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 533 KMDKASLLGDAISYINELRTKLQSAESDKEDL 564 (685)
Q Consensus 533 K~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L 564 (685)
.|.-+..|+++-+-|.+|+.+++.|+.++.+|
T Consensus 3 e~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 3 EMEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567789999999999999999999998776
No 75
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.38 E-value=15 Score=30.51 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 544 ISYINELRTKLQSAESDKEDLQKELAS 570 (685)
Q Consensus 544 I~YIk~Lq~kv~eLe~e~~~L~~~~~~ 570 (685)
-.||++|+.+|.+|+.....+..+...
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~ 54 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQ 54 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888887666555444333
No 76
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=55.19 E-value=9.4 Score=29.96 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 549 ELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 549 ~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
.|++++.+|+.+.+.|..++++++..+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777777776666654
No 77
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=55.16 E-value=57 Score=29.28 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=40.2
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAK 680 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~ 680 (685)
+|-+.-+.++|.+.+++++|.+.++.|...-.+..++.....|.+ . +.+....+|+++
T Consensus 74 vv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--~----d~~~A~~~L~~~ 131 (144)
T 2f06_A 74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--S----NMDKCIEVLKEK 131 (144)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--S----CHHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--C----CHHHHHHHHHHc
Confidence 355566799999999999999999999664443234444333433 2 677777777663
No 78
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=53.51 E-value=17 Score=26.03 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+++|+.+|++|-.++..|+.++..++..+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 57899999999999999988888776654
No 79
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=52.30 E-value=2.3 Score=44.32 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=40.0
Q ss_pred CCCCcccceecCCCceEecCCCccCC-CCCccch-hhhhcCCcEEEEeecC--C----ceEeeccc
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLAN-SGCDRAR-QGQVFGLQTLVCIPSA--N----GVVELGST 238 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~-~~~~R~~-lA~~aGIqTivcIP~~--~----GVvELGSt 238 (685)
.|.|+.|+++.+|+++++.+....+. ..+.+.. ....++++.++|||+. + |||.+.+.
T Consensus 78 ~~~g~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 78 ADKGIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp TTSHHHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred CCCchhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 88999999999999999987543211 1111111 1123678999999953 2 78998876
No 80
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=51.67 E-value=3.1 Score=49.26 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecCC------ceEeeccccc------cccChHHH
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSAN------GVVELGSTEV------IIQNSDLM 248 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~~------GVvELGSt~~------I~E~~~lv 248 (685)
.|.|+.|.++.+|++++|.+.......... .......+++.++|||+.. |||.+.+... -.+|..++
T Consensus 228 ~~~gi~g~v~~~g~pv~I~D~~~dp~f~~~-~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~D~~lL 306 (878)
T 3bjc_A 228 WNKGIVGHVAALGEPLNIKDAYEDPRFNAE-VDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDF 306 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccHHHHHHhcCceEEeCCcccCcccccc-cccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHHHHHHH
Confidence 889999999999999999875442211111 1112245689999999644 8999886542 23555666
Q ss_pred HHHHHhcc
Q 005651 249 NKVRFLFN 256 (685)
Q Consensus 249 ~~ik~~F~ 256 (685)
+.+-....
T Consensus 307 ~~lA~~~a 314 (878)
T 3bjc_A 307 AAYLAFCG 314 (878)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 65555443
No 81
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=51.28 E-value=17 Score=24.10 Aligned_cols=26 Identities=15% Similarity=0.448 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 546 YINELRTKLQSAESDKEDLQKELASV 571 (685)
Q Consensus 546 YIk~Lq~kv~eLe~e~~~L~~~~~~l 571 (685)
|+-+|+.++-+|+-+.+.|+.++..+
T Consensus 1 yvyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHHHhcc
Confidence 67788888888888888777665443
No 82
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=49.90 E-value=32 Score=24.67 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+++|+.||++|-.++..++.++..++.-+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 68899999999999999988887776654
No 83
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.29 E-value=26 Score=28.23 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 548 NELRTKLQSAESDKEDLQKELASV 571 (685)
Q Consensus 548 k~Lq~kv~eLe~e~~~L~~~~~~l 571 (685)
++|+.+..+|+.+...|+.++..+
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 84
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=49.25 E-value=32 Score=29.33 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQKELAS 570 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~ 570 (685)
+..||+-|.-||.++++|+.++..|..+.+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999998888776654444
No 85
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=49.16 E-value=23 Score=25.42 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+++|+.|+++|-.++..|+.++..++.-+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 57899999999999999998888777654
No 86
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=48.15 E-value=10 Score=37.50 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCCCeEEE----------EeeecccCCCCCeeEEEcc
Q 005651 69 LQQRLQQLIEGSREGWTYA----------IFWQSSCDYSGSSMLGWGD 106 (685)
Q Consensus 69 Lqq~L~~l~~~~~~~WtYA----------IFWq~s~~~~g~~vL~WgD 106 (685)
=||||+.|++|+ |-+- .||++++ +..+|-|+|
T Consensus 25 keQRi~~L~~G~---~F~k~~~~r~~~k~~f~rLs~---n~k~L~y~d 66 (203)
T 3a98_B 25 KQQRLNRLVEGT---CFRKLNARRRQDKFWYCRLSP---NHKVLHYGD 66 (203)
T ss_dssp HHHHHHHHHHCE---EEECSSCCTTCCSEEEEEECT---TSSEEEEEE
T ss_pred HHHHHHHHHCCC---eEeccCCccccCceEEEEECC---CCceEEEcc
Confidence 579999999997 6332 4899998 578999999
No 87
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.93 E-value=53 Score=24.21 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQK 566 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~ 566 (685)
+.+--+||++|+++..+|+.-++.|+-
T Consensus 5 vkelknyiqeleernaelknlkehlkf 31 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKF 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 456668888888888888766666543
No 88
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=46.25 E-value=23 Score=25.35 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 546 YINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 546 YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
-+++|+.|+++|-.++..|+.++..++.-+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 357899999999999999998888777654
No 89
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=44.21 E-value=19 Score=28.53 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005651 545 SYINELRTKLQSAESDKEDLQKE 567 (685)
Q Consensus 545 ~YIk~Lq~kv~eLe~e~~~L~~~ 567 (685)
.||..|+.+++.|+..+..|+..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999988887654
No 90
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=41.73 E-value=77 Score=29.43 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=36.8
Q ss_pred EEEeCceEEEEEEc-cCCCChHHHHHHHHHhCCCeEEEEEEEEe-CCEEEEEEEE
Q 005651 609 VKIIGWDAMIRIQS-SKKNHPAAKLMQALKELDLEVNHASMSVV-NDLMIQQATV 661 (685)
Q Consensus 609 V~i~g~ea~IrI~C-~~~~glL~~Im~ALeeL~LdV~~AsvS~~-~d~vl~ti~V 661 (685)
|....+.++|.|.. +.++|.+.+|+++|.+.++.|.....+.. ++...-+|+|
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 45566777888884 78899999999999999988877654322 2333344554
No 91
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=40.67 E-value=8.1 Score=44.12 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=39.1
Q ss_pred ecccCCCCCCCCcccceecCCCceEecCCCccCCCCCccchhhhhcCCcEEEEeecC-C------ceEeeccc
Q 005651 173 SFYVTGGGGGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQVFGLQTLVCIPSA-N------GVVELGST 238 (685)
Q Consensus 173 sF~~~~~~~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~~aGIqTivcIP~~-~------GVvELGSt 238 (685)
.++ .| |+.|+++.+|+++++.+..... .+. ........+++++|||+. + |||.+...
T Consensus 76 ~~p-----~~-Gi~g~v~~~~~pv~i~d~~~~~--~~~-~~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~ 139 (691)
T 3ibj_A 76 SFP-----LT-GCLGQVVEDKKSIQLKDLTSED--VQQ-LQSMLGCELQAMLCVPVISRATDQVVALACAFNK 139 (691)
T ss_dssp EEE-----CC-SSSHHHHHHCCCEEGGGSCHHH--HHH-HHHHHTSCCSCEEEEEEECSSSCSEEEEEEEESB
T ss_pred ecC-----Cc-cHHHHHHHHCCeEEeccchhcc--ccc-cccccCCccceEEEEEeEcCCCCcEEEEEEEEcC
Confidence 567 88 9999999999999998654321 010 011223568999999953 3 79987644
No 92
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.33 E-value=40 Score=26.36 Aligned_cols=33 Identities=6% Similarity=0.310 Sum_probs=13.9
Q ss_pred HHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHh
Q 005651 542 DAISYINEL-R------TKLQSAESDKEDLQKELASVKKE 574 (685)
Q Consensus 542 dAI~YIk~L-q------~kv~eLe~e~~~L~~~~~~l~~~ 574 (685)
+|++|||+- - ..++.|+.++..|+.+++.+..+
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~ 41 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEE 41 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666543 2 45666666666666666655544
No 93
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=40.17 E-value=1.3e+02 Score=27.78 Aligned_cols=66 Identities=14% Similarity=-0.014 Sum_probs=43.2
Q ss_pred EEEeCceEEEEEEccC---CCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 609 VKIIGWDAMIRIQSSK---KNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 609 V~i~g~ea~IrI~C~~---~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
|.+..+-++|.|.... .+|.+.+++++|.+.++.|...+ +....+...+ + .-+.++...+|++.+.
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv--~----~~d~~~av~~Lh~~f~ 165 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLI--D----EKYMELATRVLHKAFN 165 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEE--E----GGGHHHHHHHHHHHTT
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEE--e----HHHHHHHHHHHHHHhc
Confidence 3445566778887764 78999999999999999998854 3333332222 1 1234556666776653
No 94
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=39.85 E-value=1.3e+02 Score=26.90 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=39.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHH
Q 005651 617 MIRIQSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAA 679 (685)
Q Consensus 617 ~IrI~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~ 679 (685)
.|.|.-++++|.+.+|+..|.+.++.|....+....+.-+-.|++ .+.+.+++.|.+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~------~d~~~a~~~L~~ 64 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV------SDPDKAYKALKD 64 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE------SCHHHHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe------CCHHHHHHHHHH
Confidence 466777899999999999999999999887765444422222221 255666766654
No 95
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=38.67 E-value=6.5 Score=46.49 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCCCcccceecCCCceEecCCCccCCCCCccchhhh-h---cCCcEEEEeecC----C---ceEeecccc
Q 005651 181 GGGGLPGQAYFGNSPVWVSGAERLANSGCDRARQGQ-V---FGLQTLVCIPSA----N---GVVELGSTE 239 (685)
Q Consensus 181 ~G~GlpGka~~sg~~~Wl~~~~~~~~~~~~R~~lA~-~---aGIqTivcIP~~----~---GVvELGSt~ 239 (685)
.|.|+.|+++.+|+++++.+..... .+.+..... - ++++.++|||+. + |||+|.+..
T Consensus 410 ~~~gi~g~v~~~g~~v~i~D~~~d~--r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~ 477 (878)
T 3bjc_A 410 INYMYAQYVKNTMEPLNIPDVSKDK--RFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKM 477 (878)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hhhhHHHHHhhcCCeeeecCccccc--ccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcC
Confidence 7789999999999999998654322 222222111 1 569999999953 2 788887643
No 96
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=38.19 E-value=2.4e+02 Score=25.93 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCCCCCCCCCCCccccccccCCCCccccceEEEEeCceEEEEE
Q 005651 542 DAISYINELRTKLQSAESDKEDLQKELASVK-KELAGGGKDSHSGPSTSDQDLKMSNHASKLIDLDIEVKIIGWDAMIRI 620 (685)
Q Consensus 542 dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~-~~~~~~~sd~~s~~~p~~~~~~~s~~~~~~~~~eVeV~i~g~ea~IrI 620 (685)
+..+-|..|++++++|+.+.++++.++.... ..+... + ..+.|-.+++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~----------------------------~-~~i~g~~~~~~~ 79 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMER----------------------------A-EEFDSMKVVAEV 79 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------------------------C-EESSSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------------c-EEeCCEEEEEEE
Confidence 4455566777777777777777776554322 111110 0 011122233332
Q ss_pred EccCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 621 QSSKKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 621 ~C~~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
. ......|-.+++.|.+. +.+-+-++..++ +.+.+.+. .+ .+...+|...+.+.++
T Consensus 80 ~-~~d~~~lr~~~~~l~~~--~~vv~l~~~~~~-~~~v~~~~-~~-~~~a~~lvk~~~~~~g 135 (171)
T 2zvf_A 80 V-DADMQALQKLAERLAEK--GAVGCLMAKGEG-KVFVVTFS-GQ-KYDARELLREIGRVAK 135 (171)
T ss_dssp C-SCCHHHHHHHHHHHHHT--TEEEEEEEECSS-SEEEEEEE-SS-SSCHHHHHHHHHHHHT
T ss_pred e-CCCHHHHHHHHHHHhcC--CCEEEEEEcCCC-eEEEEEEC-CC-CCCHHHHHHHHHHHcC
Confidence 2 34556788888888777 322233334466 33333321 22 4788888888877765
No 97
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=35.77 E-value=15 Score=26.73 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 543 AISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 543 AI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
.++.|..||.|++.|+.+.+.++.++..+...+
T Consensus 2 g~~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 2 GSSSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp ----CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788899999999999998888777666544
No 98
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=34.26 E-value=1.1e+02 Score=29.48 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=40.5
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 505 NHVEAERQRR-EKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELA 569 (685)
Q Consensus 505 ~H~~aER~RR-ekLn~~f~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~ 569 (685)
...++||.++ ..-.+++..||.++-..+-.|| +...=.||+-|..++..++.+......+++
T Consensus 40 ~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~---i~~m~~yI~llrErea~lEqkVaeq~e~Ve 102 (169)
T 3k29_A 40 RERESERDKVKNHYMQKIRQLREQLDDGTTSDA---ILKMKAYIKVVAIQLSEEEEKVNKQKENVL 102 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666665 2334568888888644444444 445567999999999999887776555443
No 99
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.83 E-value=2.3e+02 Score=31.42 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005651 541 GDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGG 579 (685)
Q Consensus 541 ~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~~~~~ 579 (685)
.+.+.-+++|+.++++|+.+..+++.++..+-..+.+-.
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 345666888999999999999888888776655555543
No 100
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=33.35 E-value=66 Score=31.36 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 538 SLLGDAISYINELRTKLQSAESDKEDLQKELASVKK 573 (685)
Q Consensus 538 SIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~ 573 (685)
.|+.-+++-|..|+.+++.|+++.++|+.+...+.+
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888999999999999999999887665443
No 101
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=32.60 E-value=96 Score=28.73 Aligned_cols=54 Identities=28% Similarity=0.145 Sum_probs=37.1
Q ss_pred EEEeCceEEEEEEc-cCCCChHHHHHHHHHhCCCeEEEEEEEEe---CCEEEEEEEEE
Q 005651 609 VKIIGWDAMIRIQS-SKKNHPAAKLMQALKELDLEVNHASMSVV---NDLMIQQATVK 662 (685)
Q Consensus 609 V~i~g~ea~IrI~C-~~~~glL~~Im~ALeeL~LdV~~AsvS~~---~d~vl~ti~VK 662 (685)
|....+.++|.|.. +.++|.+.+|+.+|.+.++.|.....+.. .+..--+|+|.
T Consensus 10 Ia~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EEEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 44566777777765 56789999999999999988876544322 23444456653
No 102
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.16 E-value=1e+02 Score=25.75 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
|.+.++=|+..+.++++|+.++.+....+..++.++
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566666665555555555555544
No 103
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.70 E-value=2.7e+02 Score=30.49 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005651 542 DAISYINELRTKLQSAESDKEDLQKELASVKKELAGGG 579 (685)
Q Consensus 542 dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~~~~~ 579 (685)
+.++-+++|+.++++|+++...++.++..+-..+.|..
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45667888999999999999988888776665555543
No 104
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=30.55 E-value=89 Score=26.75 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQKELASVK 572 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~ 572 (685)
|.+|++=.++|+.+|..|+.++..++...+.++
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777788888888777777766655544
No 105
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.65 E-value=1.4e+02 Score=25.51 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 514 REKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKK 573 (685)
Q Consensus 514 RekLn~~f~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~ 573 (685)
|.+..+.+..||.-+ .+-|.+-+++|+.|+.++++.+..+..++.
T Consensus 35 rqkekEqL~~LKkkl---------------~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 35 RARAKEQLAALKKHK---------------ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566677777777543 344555555666666666666666655543
No 106
>2vnl_A Bifunctional tail protein, PIIGCN4; chimera, hydrolase, late protein, viral protein, phage P22 tailspike protein, mutant Y108WDEL; 1.80A {Enterobacteria phage P22} PDB: 2vky_B
Probab=28.59 E-value=71 Score=30.11 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=39.3
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 527 VVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 527 LVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
.+|+..|.+-...-.+|-.|++.+..+..+|..++..++.+++.+++..
T Consensus 101 ~iP~v~~~g~~~F~qea~k~~~y~~~kt~tIlsk~y~iEnEia~i~~l~ 149 (151)
T 2vnl_A 101 YIANVLKWDPDQYSIEADKKFKQIEDKIEEILSKIYHIENEIARIKKLI 149 (151)
T ss_dssp EESCGGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccCCHHHHHHHHhhccchhhcchHHHHHHHHhHHHHHHHHHHHh
Confidence 4677777777776778889999999999999999998888888776643
No 107
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=28.38 E-value=1.3e+02 Score=28.36 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=31.1
Q ss_pred EEEeCceEEEEEE-ccCCCChHHHHHHHHHhCCCeEEEEEEE
Q 005651 609 VKIIGWDAMIRIQ-SSKKNHPAAKLMQALKELDLEVNHASMS 649 (685)
Q Consensus 609 V~i~g~ea~IrI~-C~~~~glL~~Im~ALeeL~LdV~~AsvS 649 (685)
|....+.++|.|. -+.++|.+.+|++.|.+.++.|.....+
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 4456677788884 4688999999999999999666554433
No 108
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=26.60 E-value=1.3e+02 Score=20.78 Aligned_cols=28 Identities=7% Similarity=0.353 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKE 574 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~ 574 (685)
++.|+++++.|+.+.-..+..+..++..
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5678999999998877766666666543
No 109
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.51 E-value=74 Score=27.36 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
+.+|+++...|+.+++.|+.++..++..+
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444
No 110
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=26.36 E-value=2e+02 Score=25.49 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=45.8
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhC---CCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhhc
Q 005651 615 DAMIRIQSSKKNHPAAKLMQALKEL---DLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGD 683 (685)
Q Consensus 615 ea~IrI~C~~~~glL~~Im~ALeeL---~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~~ 683 (685)
+..++|-....+.+...|.++++.. +.++ ..+-|..+..+-.++.+.+. +.|+|.+ |.++|+.
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~----S~eQv~a-iY~~L~~ 101 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT----HIEQVET-LYEELGK 101 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS----SHHHHHH-HHHHHSC
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC----CHHHHHH-HHHHHhc
Confidence 3456666667888999999999887 6776 55777777777777887553 5677765 6666654
No 111
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.31 E-value=83 Score=26.50 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005651 549 ELRTKLQSAESDKEDLQKELASVKKE 574 (685)
Q Consensus 549 ~Lq~kv~eLe~e~~~L~~~~~~l~~~ 574 (685)
+++.++.+|+.+...|+.++..+..+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445554444444444444433
No 112
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=26.20 E-value=29 Score=27.68 Aligned_cols=21 Identities=5% Similarity=0.154 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005651 545 SYINELRTKLQSAESDKEDLQ 565 (685)
Q Consensus 545 ~YIk~Lq~kv~eLe~e~~~L~ 565 (685)
.||..|+++|+.|+..+..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999988776553
No 113
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=25.87 E-value=2e+02 Score=26.85 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=44.9
Q ss_pred EEEEeCceEEEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 608 EVKIIGWDAMIRIQSS---KKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 608 eV~i~g~ea~IrI~C~---~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
.|.+..+-++|.|... ..+|.+.+++++|.+.++.|.-.+ +..-.+ .+.| ..-+.+....+|++.+.
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~I--s~vV----~~~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI--SVLI----REDDLDAAARALHEQFQ 157 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEE----EGGGHHHHHHHHHHHHT
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE--EEEE----eHHHHHHHHHHHHHHHc
Confidence 3556677778888876 466899999999999999997754 223222 2222 23345666667777764
No 114
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.68 E-value=3.1e+02 Score=23.68 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005651 505 NHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKE 574 (685)
Q Consensus 505 ~H~~aER~RRekLn~~f~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~ 574 (685)
.-+..=|+||..|+.+-|+-..=. .|.+....|.+ =+.+|+.+++.|..++..+..+++.++..
T Consensus 21 eev~~lKq~RRtlKNRgyAq~CR~---Kr~~q~~~LE~---e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQSCRY---KRVQQKHHLEN---EKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566888888999888765431 22233233332 23445556666666666665555555543
No 115
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=25.53 E-value=49 Score=31.50 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=25.8
Q ss_pred cCCcEEEEeec--CC----ceEeecccccc----ccChHHHHHHHHhc
Q 005651 218 FGLQTLVCIPS--AN----GVVELGSTEVI----IQNSDLMNKVRFLF 255 (685)
Q Consensus 218 aGIqTivcIP~--~~----GVvELGSt~~I----~E~~~lv~~ik~~F 255 (685)
+..+.|+|||+ .+ |||++.....+ .||.++++.+-...
T Consensus 94 ~~t~svl~vPL~~~~g~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~ 141 (160)
T 3cit_A 94 THLPCVLLLPLRGADEGSFGTLVLANSVAISAPDGEDIESLQLLATLL 141 (160)
T ss_dssp SSSCEEEEEEEECSSSSEEEEEEEEESSCCCCCCHHHHHHHHHHHHHH
T ss_pred cccceeEEEeeecCCCcEEEEEEEeccCCCCCCCHHHHHHHHHHHHHH
Confidence 34578999997 33 89999666555 35666776665544
No 116
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=25.49 E-value=1e+02 Score=22.67 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005651 546 YINELRTKLQSAESDKEDLQK 566 (685)
Q Consensus 546 YIk~Lq~kv~eLe~e~~~L~~ 566 (685)
-+|+|+.-+++|+++..+|+.
T Consensus 4 tvkelknyiqeleernaelkn 24 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKN 24 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHh
Confidence 378999999999988877654
No 117
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.14 E-value=84 Score=27.77 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 005651 545 SYINELRTKLQSAESDKEDLQKELASVKKELAG 577 (685)
Q Consensus 545 ~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~~~ 577 (685)
+=+..|+++|+.|+.+..+|+++++.+..++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678889999999999888888877776654
No 118
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.56 E-value=88 Score=28.40 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKK 573 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~ 573 (685)
|++|+.+|+.|..+++....+++.+++
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555544444444444433
No 119
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.20 E-value=1.4e+02 Score=26.09 Aligned_cols=23 Identities=22% Similarity=0.123 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005651 540 LGDAISYINELRTKLQSAESDKE 562 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~ 562 (685)
...|=+||..|+++|+-|++.+-
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~~ 87 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDYL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHHH
Confidence 45677899999999988887653
No 120
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=22.95 E-value=1.8e+02 Score=29.27 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 005651 505 NHVEAERQRREKLNQRFYALRAVVPNV 531 (685)
Q Consensus 505 ~H~~aER~RRekLn~~f~~LRsLVP~~ 531 (685)
..+..=|.||++|...+..|..-=|..
T Consensus 104 ~svqp~R~~R~~l~~~I~kLk~k~P~s 130 (234)
T 3plt_A 104 ASVQPSRDRKEKITDEIAHLKYKDPQS 130 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHhhHHHHHHHHHHHHHHHHhccCCCC
Confidence 566777899999999999998776754
No 121
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=22.67 E-value=1.7e+02 Score=27.67 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=44.5
Q ss_pred EEEEeCceEEEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 608 EVKIIGWDAMIRIQSS---KKNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 608 eV~i~g~ea~IrI~C~---~~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
+|.+..+-++|.|... ..+|.+.+++++|.+.++.|...+.| +-.+ . +.|+ .-+.++...+|++++.
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS--ei~I-s-~vV~----~~d~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS--EIRI-S-VLCR----DTELDKAVVALHEAFG 158 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE--TTEE-E-EEEE----GGGHHHHHHHHHHHHT
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC--CCEE-E-EEEe----HHHHHHHHHHHHHHHc
Confidence 3445566677777665 57899999999999999998877722 3232 2 2221 2345666667887764
No 122
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=22.45 E-value=2.9e+02 Score=25.37 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=44.1
Q ss_pred EEEEeCceEEEEEEccC---CCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeCCcccCHHHHHHHHHHHhh
Q 005651 608 EVKIIGWDAMIRIQSSK---KNHPAAKLMQALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 682 (685)
Q Consensus 608 eV~i~g~ea~IrI~C~~---~~glL~~Im~ALeeL~LdV~~AsvS~~~d~vl~ti~VKvg~~~~t~e~L~aaL~~~l~ 682 (685)
.|.+..+-+.|.|.... .+|.+.+++++|.+.++.|.-.+ +..-.+ .+.|+ .-+.++...+|++++.
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~i--s~vv~----~~d~~~Av~~Lh~~f~ 157 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVRI--SVIIP----AEYAEAALRAVHQAFE 157 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSSEE--EEEEE----GGGHHHHHHHHHHHTC
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCCEE--EEEEe----HHHHHHHHHHHHHHHc
Confidence 45556666778887764 78999999999999999995554 222222 22232 2245666677777654
No 123
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=22.31 E-value=1.3e+02 Score=25.58 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005651 542 DAISYINELRTKLQSAESDKEDLQKELASVKKE 574 (685)
Q Consensus 542 dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~ 574 (685)
+-|.=|++|+-+|.+|+.++.+-+.++.+.+.+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~E 55 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAE 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 566778888888888888877665555554443
No 124
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=22.17 E-value=49 Score=21.78 Aligned_cols=9 Identities=56% Similarity=0.770 Sum_probs=6.1
Q ss_pred HHHHHHHHH
Q 005651 508 EAERQRREK 516 (685)
Q Consensus 508 ~aER~RRek 516 (685)
-+||+||..
T Consensus 11 gaerrrrra 19 (26)
T 1g70_B 11 GAERRRRRA 19 (26)
T ss_pred hHHHHHHHH
Confidence 478888753
No 125
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.01 E-value=1e+02 Score=28.01 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 005651 540 LGDAISYINELRTKLQSAESDKEDLQKELASVKKELAG 577 (685)
Q Consensus 540 L~dAI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~~~ 577 (685)
+.+-=.-|+.|.+++++..++.++|++....+...+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 56666778999999999999999999988877766644
No 126
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=21.81 E-value=3.5e+02 Score=28.84 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=39.3
Q ss_pred EEEeCceEEEEEE-ccCCCChHHHHHHHHHhCCCeEEEEEEEEe---CCEEEEEEEEE
Q 005651 609 VKIIGWDAMIRIQ-SSKKNHPAAKLMQALKELDLEVNHASMSVV---NDLMIQQATVK 662 (685)
Q Consensus 609 V~i~g~ea~IrI~-C~~~~glL~~Im~ALeeL~LdV~~AsvS~~---~d~vl~ti~VK 662 (685)
|....+.++|.|. .+.++|.+.+|++.|.+.++.|.....++. .+...-+|+|.
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 4566788889998 577899999999999999999887653222 23344455553
No 127
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.53 E-value=1.7e+02 Score=20.23 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005651 547 INELRTKLQSAESDKEDLQKELASVKK 573 (685)
Q Consensus 547 Ik~Lq~kv~eLe~e~~~L~~~~~~l~~ 573 (685)
|..|++++..|+.+...|+-++..++.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566788888888777777666665543
No 128
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.06 E-value=2.2e+02 Score=21.38 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005651 543 AISYINELRTKLQSAESDKEDLQKELASVKKEL 575 (685)
Q Consensus 543 AI~YIk~Lq~kv~eLe~e~~~L~~~~~~l~~~~ 575 (685)
..+-+.+|+.+-++||+++..|+.+++.+...+
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888887776544
Done!