Query 005652
Match_columns 685
No_of_seqs 320 out of 1706
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 11:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2224 Uncharacterized conser 100.0 1.7E-50 3.7E-55 419.2 32.4 301 355-657 404-736 (781)
2 KOG4567 GTPase-activating prot 100.0 2.1E-43 4.5E-48 356.6 21.0 287 361-653 12-363 (370)
3 KOG2058 Ypt/Rab GTPase activat 100.0 6.8E-42 1.5E-46 369.3 21.0 253 359-636 124-385 (436)
4 KOG2197 Ypt/Rab-specific GTPas 100.0 1E-42 2.2E-47 386.8 13.3 304 351-655 143-446 (488)
5 KOG1092 Ypt/Rab-specific GTPas 100.0 2.9E-40 6.2E-45 345.3 18.3 277 370-657 174-480 (484)
6 KOG1648 Uncharacterized conser 100.0 1.5E-41 3.3E-46 357.6 7.3 509 41-648 250-800 (813)
7 smart00164 TBC Domain in Tre-2 100.0 2.5E-38 5.4E-43 315.8 17.2 194 383-595 2-197 (199)
8 PF12068 DUF3548: Domain of un 100.0 1.8E-38 3.9E-43 315.2 14.2 147 42-189 3-200 (213)
9 KOG2223 Uncharacterized conser 100.0 3.5E-36 7.5E-41 314.1 21.7 263 373-650 290-555 (586)
10 COG5210 GTPase-activating prot 100.0 2.8E-35 6.1E-40 332.7 21.1 247 354-620 179-430 (496)
11 PF00566 RabGAP-TBC: Rab-GTPas 100.0 8.7E-34 1.9E-38 285.1 18.5 212 388-617 1-214 (214)
12 KOG2222 Uncharacterized conser 100.0 3.8E-30 8.2E-35 270.6 17.6 261 361-647 149-415 (848)
13 KOG1093 Predicted protein kina 100.0 3E-28 6.5E-33 262.7 17.7 241 382-655 352-595 (725)
14 KOG1091 Ypt/Rab-specific GTPas 99.9 1.4E-26 3.1E-31 250.1 19.3 262 388-655 27-367 (625)
15 KOG4436 Predicted GTPase activ 99.9 9.5E-27 2.1E-31 258.7 15.5 257 358-637 549-810 (948)
16 KOG4347 GTPase-activating prot 99.9 1.6E-26 3.5E-31 253.8 16.2 266 358-651 173-458 (671)
17 KOG2595 Predicted GTPase activ 99.9 4.6E-23 1E-27 211.4 15.6 256 372-657 46-307 (395)
18 KOG1102 Rab6 GTPase activator 99.9 4.2E-23 9.2E-28 226.0 14.1 239 373-639 134-374 (397)
19 KOG2221 PDZ-domain interacting 99.8 1.2E-20 2.6E-25 183.1 2.3 190 358-571 75-267 (267)
20 KOG4436 Predicted GTPase activ 99.5 5.3E-14 1.1E-18 157.9 11.7 251 359-637 164-425 (948)
21 KOG3636 Uncharacterized conser 99.5 2.5E-13 5.5E-18 143.8 14.1 203 449-656 69-277 (669)
22 KOG2801 Probable Rab-GAPs [Int 98.9 5E-08 1.1E-12 99.2 16.1 254 373-651 31-294 (559)
23 KOG2197 Ypt/Rab-specific GTPas 97.5 7.2E-05 1.6E-09 84.6 4.7 84 351-434 43-126 (488)
24 PF14961 BROMI: Broad-minded p 96.7 0.024 5.1E-07 68.7 14.3 172 474-649 1085-1276(1296)
25 KOG2224 Uncharacterized conser 93.4 0.027 5.9E-07 60.8 0.7 34 489-522 566-599 (781)
26 PF08567 TFIIH_BTF_p62_N: TFII 60.0 54 0.0012 27.9 7.7 65 64-142 12-78 (79)
27 PF14472 DUF4429: Domain of un 52.8 14 0.0003 32.5 3.0 31 104-134 27-58 (94)
28 KOG1102 Rab6 GTPase activator 52.7 3.5 7.6E-05 45.9 -0.9 115 449-595 2-116 (397)
29 COG1507 Uncharacterized conser 28.4 1.1E+02 0.0024 29.1 5.0 31 110-141 20-53 (167)
30 cd01047 ACSF Aerobic Cyclase S 28.3 99 0.0022 33.0 5.1 61 551-611 161-225 (323)
31 PF04683 Proteasom_Rpn13: Prot 26.9 3.5E+02 0.0077 23.3 7.6 56 62-127 13-69 (85)
32 TIGR02029 AcsF magnesium-proto 25.3 1.2E+02 0.0027 32.5 5.2 61 551-611 171-235 (337)
33 PF08109 Antimicrobial14: Lact 24.3 51 0.0011 22.0 1.4 16 489-504 3-18 (31)
34 CHL00185 ycf59 magnesium-proto 23.6 1.3E+02 0.0029 32.4 5.1 61 551-611 177-241 (351)
35 PLN02508 magnesium-protoporphy 22.9 1.4E+02 0.0031 32.3 5.1 61 551-611 177-241 (357)
36 PRK13654 magnesium-protoporphy 21.6 1.1E+02 0.0024 33.1 4.1 61 551-611 181-245 (355)
37 PF11605 Vps36_ESCRT-II: Vacuo 21.4 3.9E+02 0.0084 23.3 6.8 71 44-130 15-87 (89)
38 PF07024 ImpE: ImpE protein; 20.2 81 0.0017 29.3 2.4 35 106-140 30-72 (123)
No 1
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.7e-50 Score=419.24 Aligned_cols=301 Identities=38% Similarity=0.755 Sum_probs=266.7
Q ss_pred CCCHHHHHH-hhhcCCCCCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHh-hcC
Q 005652 355 PLGSEEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW-QSI 432 (685)
Q Consensus 355 plt~~~W~~-~~d~~g~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~-~~~ 432 (685)
.++..-|.. .++..|.+-+.-+||+.+|.|||..++|++||+|||.+|...+|.++|..+...++.+|+++.++- .++
T Consensus 404 ki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysm 483 (781)
T KOG2224|consen 404 KIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSM 483 (781)
T ss_pred hhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344556766 667778887888999999999999999999999999999999999999999999999999987653 466
Q ss_pred ChHHHhhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhH
Q 005652 433 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQS 512 (685)
Q Consensus 433 ~~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~A 512 (685)
++++. ...|+.....++|||.||+|+++||.+++||+.+.|+|||..|+.|||.+||.|||+|++||+|.-.++|.++
T Consensus 484 speeh--~~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqneset 561 (781)
T KOG2224|consen 484 SPEEH--IAFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESET 561 (781)
T ss_pred CHHHH--HHHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccch
Confidence 66654 3467888888999999999999999999999999999999999999999999999999999999888888889
Q ss_pred HHHHHHHHHhhCC--------------------------CC--CCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCC--
Q 005652 513 FWCFVALMERLGP--------------------------NF--NRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCL-- 562 (685)
Q Consensus 513 Fw~f~~Lm~~~~~--------------------------nf--~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~-- 562 (685)
||||+++|+.|.. .| .+....|..++..+++|++.+.|.+|+||+++|-+
T Consensus 562 fwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~l 641 (781)
T KOG2224|consen 562 FWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGL 641 (781)
T ss_pred hhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchh
Confidence 9999888885421 12 12336788899999999999999999999999744
Q ss_pred cchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHH
Q 005652 563 NYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAI 642 (685)
Q Consensus 563 ~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~id~~~l 642 (685)
.++||.||++.+|+|+||-..++|||+..|++|....|++|+|+||+..+.+.+++.+...|+++-+|.+|.+.||-+-+
T Consensus 642 ellfchrwlllcfkref~ea~airiweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgeli 721 (781)
T KOG2224|consen 642 ELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELI 721 (781)
T ss_pred hHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhh
Confidence 56899999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHHhccCC
Q 005652 643 LRDAEALCICAGENG 657 (685)
Q Consensus 643 L~~A~~L~~~~~e~~ 657 (685)
|++|+.|..+..-..
T Consensus 722 lrkar~ll~qfr~lp 736 (781)
T KOG2224|consen 722 LRKARGLLHQFRLLP 736 (781)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999987765443
No 2
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2.1e-43 Score=356.60 Aligned_cols=287 Identities=28% Similarity=0.499 Sum_probs=243.8
Q ss_pred HHHhhhcCCCCCChHHHHHHHHhCCCC--chhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcC------
Q 005652 361 WTTFLDNEGRVMDSNALRKRIFYGGVD--HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI------ 432 (685)
Q Consensus 361 W~~~~d~~g~~~~~~~Lk~~i~~~GIp--~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~------ 432 (685)
-+..+......++.+++|+ ++..|+| ..+|+.+|++|||+++.+.+.+ ....++++..|..++.+...-
T Consensus 12 ~edvl~~~~~~id~kelr~-~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w--~s~La~~R~~Y~q~i~e~v~epg~~~~ 88 (370)
T KOG4567|consen 12 IEDVLNPADDTIDLKELRK-LCFYGVPDDASLRPLVWKLLLGYLPPERSKW--TSFLAKKRSLYKQFIEEIVDEPGKKDN 88 (370)
T ss_pred HHHhhccccchhhHHHHHH-HhhcCCCCccchhHhHHHHHHhhcChhhhhh--HHHHHHHHHHHHHHHHHhccCcccccc
Confidence 3344443334488999998 6689999 6799999999999999876654 677788899998888764211
Q ss_pred ----C--------------hHHHhhhhhhcccccceeccccccCCCCcccCCCCC-------------------------
Q 005652 433 ----S--------------PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDN------------------------- 469 (685)
Q Consensus 433 ----~--------------~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~------------------------- 469 (685)
. ......+.+..|...||++||.||.|...+|+....
T Consensus 89 ~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~g 168 (370)
T KOG4567|consen 89 SKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLG 168 (370)
T ss_pred ccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccc
Confidence 0 011223344457789999999999999999976321
Q ss_pred hhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcc----------hhhHHHHHHHHHHhhCCCCCCC----chhHH
Q 005652 470 PNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED----------ESQSFWCFVALMERLGPNFNRD----QNGMH 535 (685)
Q Consensus 470 ~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~d----------E~~AFw~f~~Lm~~~~~nf~~d----~~gm~ 535 (685)
-......|||..|+..||.+|||||||.|+||||+|+.+ |+|||.||+.||..+++||..+ .-|++
T Consensus 169 l~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~ 248 (370)
T KOG4567|consen 169 LTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIH 248 (370)
T ss_pred hhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchH
Confidence 112335789999999999999999999999999999952 8999999999999999998643 45888
Q ss_pred HHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 005652 536 SQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNK 615 (685)
Q Consensus 536 ~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~~~~~fll~valAIL~~~r~~ 615 (685)
..+..+..+|+.+|-+||.||+..++.+.+|+|||++++++.|||+++|+||||.++++.....|++++|+|||...|+.
T Consensus 249 ~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~ 328 (370)
T KOG4567|consen 249 FLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRER 328 (370)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Q 005652 616 IMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICA 653 (685)
Q Consensus 616 Il~~~~dfdeilk~l~~L~~~id~~~lL~~A~~L~~~~ 653 (685)
|++. ||...++++++.| +.|+..++..|..|....
T Consensus 329 il~~--DF~~nmkLLQ~yp-~tdi~~~l~~A~~Lr~~k 363 (370)
T KOG4567|consen 329 ILEG--DFTVNMKLLQNYP-TTDISKMLAVADSLRDKK 363 (370)
T ss_pred HHhc--chHHHHHHHhcCC-CCCHHHHHHHHHHHHhcc
Confidence 9976 9999999999998 899999999999998643
No 3
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-42 Score=369.29 Aligned_cols=253 Identities=26% Similarity=0.405 Sum_probs=219.4
Q ss_pred HHHHHhhhcC-------CCCCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhc
Q 005652 359 EEWTTFLDNE-------GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQS 431 (685)
Q Consensus 359 ~~W~~~~d~~-------g~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~ 431 (685)
.+|...+..+ .-....+++|+ ++|+|||+++|++||..+.|.... ...+..|+++++.-..
T Consensus 124 ~~~~l~~~~~~~~~~~~~~~~~s~elk~-liRkGiP~~~R~~VW~~~~g~~~~-----------~~~~~~yq~ll~~~~~ 191 (436)
T KOG2058|consen 124 LRWELELQSNIKLHSPNDFPPRSDELKR-LIRKGIPPELRGEVWWVLSGARRQ-----------LNYPGYYQELLRKGDE 191 (436)
T ss_pred HHHHHHhhhhhcccccccccCCcHHHHH-HHHcCCChhhhhHHHHHHhcchhh-----------ccCchhHHHHHhcCCC
Confidence 5677666653 11244678887 669999999999999999993211 1116788888754211
Q ss_pred CChHHHhhhhhhcccccceeccccccCCCC-cccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchh
Q 005652 432 ISPEQARRFTKFRERKGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDES 510 (685)
Q Consensus 432 ~~~~~~~~~~~~~e~~~~I~kDV~RT~~~~-~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~ 510 (685)
. -.....+|+.|+.||+|++ +.|..++..++..|+|||.||+++||++|||||||+|||++|++|++|+
T Consensus 192 ~----------~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE 261 (436)
T KOG2058|consen 192 K----------KSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEE 261 (436)
T ss_pred c----------cchHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChH
Confidence 0 0134569999999999999 8999988888999999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHHhhCC-CCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHH
Q 005652 511 QSFWCFVALMERLGP-NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWE 589 (685)
Q Consensus 511 ~AFw~f~~Lm~~~~~-nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD 589 (685)
+|||||+.+++++.+ +|..++.|.+....+|+.||+..+|+|+.||+.++++..++++.||+|+|+..+|.+.++||||
T Consensus 262 ~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD 341 (436)
T KOG2058|consen 262 DAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWD 341 (436)
T ss_pred HHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHH
Confidence 999999999999877 6778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC
Q 005652 590 VLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR 636 (685)
Q Consensus 590 ~~l~~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~ 636 (685)
+++.+ |.++++.+|+|+++.+++.|+.++ +..++++++..+...
T Consensus 342 ~~f~e--Gskvlfr~Alai~k~~ee~il~~~-~~~~i~~~~~~~~~~ 385 (436)
T KOG2058|consen 342 CLFYE--GSKVLFRVALAILKKHEEEILKED-SSKEILRVLPDLTKR 385 (436)
T ss_pred HHHhc--ccHHHHHHHHHHHHHhHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 99977 779999999999999999999997 899999999887633
No 4
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1e-42 Score=386.80 Aligned_cols=304 Identities=50% Similarity=0.835 Sum_probs=283.4
Q ss_pred CCCCCCCHHHHHHhhhcCCCCCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhh
Q 005652 351 PRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 430 (685)
Q Consensus 351 ~r~~plt~~~W~~~~d~~g~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~ 430 (685)
.+.+.++.++|......++++......+.+++++|+-+.+|+++|++++++++|+.+..++...... ..+|.+.+.+|.
T Consensus 143 ~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~ 221 (488)
T KOG2197|consen 143 NRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWS 221 (488)
T ss_pred CCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhhe
Confidence 3444589999999998899886655566678999998899999999999999999999999998888 999999999999
Q ss_pred cCChHHHhhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchh
Q 005652 431 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDES 510 (685)
Q Consensus 431 ~~~~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~ 510 (685)
.....+...+..+.+....|.+||.||++.+.+|..+.+++...|.+||.+|++||+++||||||+|+++|++.++++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~ 301 (488)
T KOG2197|consen 222 STSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEV 301 (488)
T ss_pred eccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCch
Confidence 98887766555567778899999999999999999988778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHH
Q 005652 511 QSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEV 590 (685)
Q Consensus 511 ~AFw~f~~Lm~~~~~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~ 590 (685)
+|||||+++|+++..||..++.||+.++..+..+++..||.||.||+..+....+|||||++++|.|||.++++++||++
T Consensus 302 ~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEv 381 (488)
T KOG2197|consen 302 EAFWCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEV 381 (488)
T ss_pred HHHHHHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Q 005652 591 LWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE 655 (685)
Q Consensus 591 ~l~~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~id~~~lL~~A~~L~~~~~e 655 (685)
+|+..++.+|+++++.|+|.+..+.|+.+..++++++++++.+..+.|...++..|..++.+...
T Consensus 382 lw~~~~~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k~ 446 (488)
T KOG2197|consen 382 LWTDLPSPHFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALERQNKQ 446 (488)
T ss_pred HHhcCccchHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccchhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999876433
No 5
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-40 Score=345.26 Aligned_cols=277 Identities=27% Similarity=0.516 Sum_probs=243.3
Q ss_pred CCCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhcccccc
Q 005652 370 RVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 449 (685)
Q Consensus 370 ~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~~~~~~~~e~~~~ 449 (685)
..++.++||+ ++++|||..+|+.+|+.|+|+.|.++. -|+...+.++.+|..++.++........ .-.+..+|
T Consensus 174 ~~id~~~Lr~-l~w~Gvp~~~Rp~~Wkll~gylp~n~~--rr~~~l~~Kr~eY~~~v~~~~~~~~~~~----~~~d~~rQ 246 (484)
T KOG1092|consen 174 PIIDLEKLRK-LCWNGVPSKMRPIVWKLLSGYLPPNSD--RREGTLQRKRKEYVDSVVQYFDSLTNGD----EDQDTWRQ 246 (484)
T ss_pred ccccHHHHHH-HccCCCCccccCccceeeecccCcchh--hhhhhHHHHHHHHHHHHHHHhccCCCcc----ccCccccc
Confidence 3478888887 789999999999999999999987754 4577888899999999988765433211 22345679
Q ss_pred eeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhc----------------------
Q 005652 450 IDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------------------- 507 (685)
Q Consensus 450 I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~---------------------- 507 (685)
|..|+.|+.|..++|..+. -++.+.|||..++.++|-.||+||.+|++.|++.++.
T Consensus 247 I~id~prm~p~~~l~q~~~--vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~ 324 (484)
T KOG1092|consen 247 IPIDIPRMNPHIPLFQQKI--VQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAEN 324 (484)
T ss_pred cccCCCCCCccccchhhHH--HHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHH
Confidence 9999999999999998754 4589999999999999999999999999999998872
Q ss_pred ---chhhHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHH
Q 005652 508 ---DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKT 584 (685)
Q Consensus 508 ---dE~~AFw~f~~Lm~~~~~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~v 584 (685)
-|++||||+.+|++.+..||..-|+|++.+...|+.|++.+|+.|++||+++|++-+.|+|||+-|+|.||||+..+
T Consensus 325 ~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~ 404 (484)
T KOG1092|consen 325 AEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCT 404 (484)
T ss_pred HhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhH
Confidence 18999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHhccCC
Q 005652 585 MRLWEVLWTHYLS-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENG 657 (685)
Q Consensus 585 lrLWD~~l~~~~~-~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~----id~~~lL~~A~~L~~~~~e~~ 657 (685)
+||||.++++..| ..||+|||+|.|.+.+++|+ ++||.+++-||+++|.. -+++-||..|..+.....+.+
T Consensus 405 iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~--e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f~da~ 480 (484)
T KOG1092|consen 405 IRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELM--ENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVFSDAP 480 (484)
T ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHccch
Confidence 9999999998555 47999999999999999999 45999999999999833 367788888888777665554
No 6
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=100.00 E-value=1.5e-41 Score=357.58 Aligned_cols=509 Identities=23% Similarity=0.369 Sum_probs=372.8
Q ss_pred CCcEEEEeeCCeEEccCccccCCCCceEEEEeeCCceeEEEEecCCCCCCccccccccCcceeee--eeCCCeeEEEEeC
Q 005652 41 EGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRRHT 118 (685)
Q Consensus 41 ~~~~llf~Ks~V~vhpt~~~~d~i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~--v~ls~i~Si~~~~ 118 (685)
++++|||+|++|.|+|.. +++.+||||+|+|-...+.|+|+||+.++.+...++-+.+.||.++ |++.+|.+|+||+
T Consensus 250 sr~~llygkN~vlvqPk~-dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHcHQ 328 (813)
T KOG1648|consen 250 SRTRLLYGKNHVLVQPKS-DMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHCHQ 328 (813)
T ss_pred chhhhhcccccccccCch-hhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEeec
Confidence 677999999999999976 7899999999999999999999999999988777777888898765 9999999999999
Q ss_pred CCCCceEEEEEeCCCCcCCceEeecCChH-HHHHHHHhcccccccCCCCceEEEeCCchhhhhhhcccCCCccccccCCC
Q 005652 119 PAFGWQYIIVVLSSGLAFPPLYFYTGGVR-EFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGS 197 (685)
Q Consensus 119 p~~Gw~~~ii~~~~g~~~P~L~F~~gG~~-~fl~~L~~~v~l~rS~~d~~~~lv~~~~~~l~~~~s~~~~~~~~~~~~~~ 197 (685)
....-..+++|.+||.+.|||+|..||+. .||+|| +.+.+++..+||++|.=. . .+..+|+.++.+.+.
T Consensus 329 q~eSggtlvlVsqdGiQrpPf~fP~GgHll~FLScL-EnGLlP~gqLdPPLW~q~--------g-KgKvfPkLRKRS~~~ 398 (813)
T KOG1648|consen 329 QDESGGTLVLVSQDGIQRPPFQFPAGGHLLAFLSCL-ENGLLPLGQLDPPLWVQT--------G-KGKVFPKLRKRSTAV 398 (813)
T ss_pred ccCCCCeEEEEecccccCCCccCCCCchhHHHHHHH-HhcCCcccccCCcccccc--------C-CcccchhhhhcCccc
Confidence 96444789999999999999999999988 999999 899999999999999832 2 333444433322222
Q ss_pred CCCcccCCCCCcccccccCCCC--------------------CCCCCCcccc------------cccc----cccCCChh
Q 005652 198 STPVSIGDSPTNVNLERTNGGL--------------------GHDSHSISQF------------HGRQ----KQKAQDPA 241 (685)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~------------~~~~----~~~~~d~~ 241 (685)
+...-..+. .++.|+++ -+.+...++. ++++ ...+-.++
T Consensus 399 s~~~~~~~~-----~~atDYVFRiiypg~~~E~~p~D~~d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~ 473 (813)
T KOG1648|consen 399 SNPAMEMGT-----GRATDYVFRIIYPGSGVEPAPEDIEDPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNF 473 (813)
T ss_pred CCchhhcCc-----ccccceEEEEeecCCCCCCCchhhhccccCCCCcccCCCCcccccccccCCCCCCccccccccccc
Confidence 110000000 01111111 0000000000 0000 00001111
Q ss_pred hHHHHHHHhhHHhHHHHHHHHHHHHhhccCCCCCCccccccccccccccCccccchhhhhhccCCCCCChhhhhhccccc
Q 005652 242 RDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEKISSRKHI 321 (685)
Q Consensus 242 ~~~~~~~~~~~s~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 321 (685)
.+... -.|.++.+++++++| |||.++||+.++.+.|.+ .+++...+.+|..
T Consensus 474 -r~pl~-----llC~sMk~QI~sRAF-----YGWLaycRHLsTvRTHLs---------aLV~h~~~~pD~p--------- 524 (813)
T KOG1648|consen 474 -RLPLG-----LLCQSMKNQIMSRAF-----YGWLAYCRHLSTVRTHLS---------ALVDHKTLIPDDP--------- 524 (813)
T ss_pred -cchHH-----HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH---------HHhcccccCCCCC---------
Confidence 12234 458899999999988 999999999999888875 3455544433210
Q ss_pred cchhhhcccCceeeeecccccccccccCCCCCCCCCHHHHHHhhhcCCCCCChHHHHHHHHhCCCCchhhHHHHHHHhCC
Q 005652 322 HDEEAVTNVGTFELIDCKEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGY 401 (685)
Q Consensus 322 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~r~~plt~~~W~~~~d~~g~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv 401 (685)
......+|++-|+.+..+. -+..-++.+...+||+....|+.+|+.+++.
T Consensus 525 ----------------------------cda~~glt~~~W~qy~~d~--t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~ 574 (813)
T KOG1648|consen 525 ----------------------------CDASAGLTEKFWKQYRADP--TIEEWRVLEAEVRGRDEEAFRAARAPKAASP 574 (813)
T ss_pred ----------------------------CCccccccHHHHHHHhcCC--chHHHHHHHHHHhcccHHHHhhccccccccc
Confidence 1112357788888875432 2233344455678999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhh
Q 005652 402 YAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLT 481 (685)
Q Consensus 402 ~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~a 481 (685)
+...+...+.+.........|++..-.|. +-..++|++|+.|.+++..+|...++- +. +++..+
T Consensus 575 ~~~g~~~~~~d~~e~~~s~~y~~~l~~~~-------------~~~~~~~~kd~e~~~~~~~~fs~~~~l--es-~~~~~~ 638 (813)
T KOG1648|consen 575 VREGSCDVFEDPNEPTCSQHYDRNLITLF-------------RANLHRIDKDVERCDRNLMFFSNKDNL--ES-RRVMYT 638 (813)
T ss_pred ccccccchhcCCCccHHHHHHHHHHHHHH-------------hhheeeecchhhhCcchheeecCCcch--hh-heeeee
Confidence 88777766666666666777877665543 334679999999999999999987653 55 889999
Q ss_pred hhhccCCCCcccchhHHHHHHHHHhcchhhHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccC
Q 005652 482 YSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDC 561 (685)
Q Consensus 482 ys~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~f~~Lm~~~~~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i 561 (685)
|...|-+-||.|||.||.+|++..++||..+--||.-+|-+-...|.. .+||.+.+-.++ +++..+|-.. -++ .
T Consensus 639 ~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~~~q-~~~~~~~l~~~r-~~~v~~~l~s-~id---~ 712 (813)
T KOG1648|consen 639 YVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFPQ-RPGMSKCLLNLR-LIQVVDPLIS-DID---Y 712 (813)
T ss_pred eeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhcccCCC-CCCccccccccc-chhhhcchhc-chh---h
Confidence 999999999999999999999999999988888998888877766654 578888877776 8888888322 221 1
Q ss_pred CcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCC
Q 005652 562 LNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYL---SEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRID 638 (685)
Q Consensus 562 ~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~~---~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~id 638 (685)
. .-..|+||+.-|+++++.+.....|+++|.... ...|-+|+.+|. -...+.++.++.+..++++|+|......|
T Consensus 713 ~-qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~-~~~~~~~~t~~~~~t~~i~~~~~~~e~~~ 790 (813)
T KOG1648|consen 713 A-QALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIFFGLAT-TNYHDVLITNNFDYTDMIKFFNEMAERHD 790 (813)
T ss_pred h-hhcceeeeccCcccccCCCCcceeeEeeccccccccCcchhhhhhhHH-HhhHHHHhhcccchHHHHHHHHHHHhhhh
Confidence 1 123499999999999999999999999997532 246889999998 56667777777788999999999876677
Q ss_pred HHHHHHHHHH
Q 005652 639 LDAILRDAEA 648 (685)
Q Consensus 639 ~~~lL~~A~~ 648 (685)
-+.++.-|..
T Consensus 791 c~r~~~~~~~ 800 (813)
T KOG1648|consen 791 CSRLLSSART 800 (813)
T ss_pred hHHHHhcCcc
Confidence 7776655543
No 7
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=2.5e-38 Score=315.81 Aligned_cols=194 Identities=36% Similarity=0.659 Sum_probs=173.1
Q ss_pred hCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhcccccceeccccccCCCCc
Q 005652 383 YGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVT 462 (685)
Q Consensus 383 ~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~~~~~~~~e~~~~I~kDV~RT~~~~~ 462 (685)
++|||+++|++||+.++|+.+...+ ..+..|.++++++..... ...++|++||.||+|+++
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~~~----------~~~~~I~~Dv~Rt~~~~~ 62 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPKDK----------SIVHQIEKDLRRTFPEHS 62 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCCCh----------hhHHHHhcccCCCCCCch
Confidence 6899999999999999999764432 136789888876543211 124699999999999999
Q ss_pred ccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHHHHHHHHHhhCCC-CCCCchhHHHHHHHH
Q 005652 463 FFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN-FNRDQNGMHSQLFAL 541 (685)
Q Consensus 463 ~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~f~~Lm~~~~~n-f~~d~~gm~~~l~~l 541 (685)
+|+.+.+++++.|+|||.+|+.+||++||||||++||+++++++.+|++|||||+++|+++..+ |..+..++...+..+
T Consensus 63 ~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 142 (199)
T smart00164 63 FFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQL 142 (199)
T ss_pred hhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHH
Confidence 9998777889999999999999999999999999999999999988999999999999998776 556667899999999
Q ss_pred HHHHHhhChhHHHHHHh-ccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhc
Q 005652 542 SKLVELLDNPLHNYFKQ-NDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY 595 (685)
Q Consensus 542 ~~LL~~~dP~L~~hL~~-~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~ 595 (685)
+.+++..+|+||+||++ .|+++.+|+++||+++|+++||++.++||||+++.+|
T Consensus 143 ~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 143 DRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 99999999999999996 9999999999999999999999999999999999885
No 8
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=100.00 E-value=1.8e-38 Score=315.15 Aligned_cols=147 Identities=33% Similarity=0.700 Sum_probs=129.1
Q ss_pred CcEEEEeeCCeEEccCccc----cCCCCceEEEEeeCCceeEEEEecCCCCCCc--------------------------
Q 005652 42 GAELVYLKDNVTIHPTQFA----SERISGRLKLIKQGSSLFMTWIPYKGQNSNT-------------------------- 91 (685)
Q Consensus 42 ~~~llf~Ks~V~vhpt~~~----~d~i~G~l~l~~~~~~~~l~W~P~~~~~~~~-------------------------- 91 (685)
.++|||+|+|||||||++. ++||||||+|++++++++|+|.|.++..+..
T Consensus 3 ~~kllfeKsgVyIHps~~~~~~~d~~IpGfL~Ivek~~~~~l~w~P~e~~~d~s~~l~s~~d~ss~~~~~~~~~~~~~e~ 82 (213)
T PF12068_consen 3 SVKLLFEKSGVYIHPSASKHSDQDDNIPGFLRIVEKDSEVLLEWSPSEDSSDASQVLYSWKDSSSVVESDETDFDSGYEP 82 (213)
T ss_pred cceEEEEeCCEEEcCCccccCcccccCCeEEEEEEeCCCcccccCCcccccCcchheecccCccccccccccccCCCcCC
Confidence 5899999999999999987 8999999999999999999999988741100
Q ss_pred -c--c----------------cc-cccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCCcCCceEeecCChHHHHH
Q 005652 92 -R--L----------------SE-KDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLA 151 (685)
Q Consensus 92 -~--~----------------~~-~d~~~~~~~~v~ls~i~Si~~~~p~~Gw~~~ii~~~~g~~~P~L~F~~gG~~~fl~ 151 (685)
+ . +. .+...| +|+|||+|||||++++|++|||||+|++|||+++||||||+||+++||+
T Consensus 83 dw~~vnt~~~~~~~~s~~~~s~~~~~~~~~-aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG~~~p~L~Fh~gg~~~fl~ 161 (213)
T PF12068_consen 83 DWAVVNTVSKKKRLHSSSPASSPSSSRSSY-AFSVPLSDLKSIRVSKPSLGWWYLVFILKDGTSLPPLHFHDGGSKEFLK 161 (213)
T ss_pred CcccccCCCCccccCCCCCCCCCcCCCcce-EEEEEhhheeeEEecCCCCCceEEEEEecCCCccCceEEecCCHHHHHH
Confidence 0 0 00 002234 6999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccCCCCceEEEeCCc-hhhhhhhcccCCCc
Q 005652 152 TIKQHVLLVRSVEDANVFLVNDFD-NRLQRTLSSLELPR 189 (685)
Q Consensus 152 ~L~~~v~l~rS~~d~~~~lv~~~~-~~l~~~~s~~~~~~ 189 (685)
+|++|+.|.||..|+|+|||++.. +.|+++|+.+++.+
T Consensus 162 ~L~~~v~l~~S~~D~~~~lv~~~~s~aL~~S~~~L~lf~ 200 (213)
T PF12068_consen 162 SLQRYVTLARSPRDSNLYLVNDHNSEALSQSFSELQLFD 200 (213)
T ss_pred HHHhhEEEeecCCCCcEEEEECCCchHHHHHHHHhhccc
Confidence 999999999999999999999987 99999999987663
No 9
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.5e-36 Score=314.08 Aligned_cols=263 Identities=22% Similarity=0.405 Sum_probs=224.4
Q ss_pred ChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHH-HHHHHHHhhcCChHHHhhhhhhccccccee
Q 005652 373 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSE-YENIKRQWQSISPEQARRFTKFRERKGLID 451 (685)
Q Consensus 373 ~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~-Y~~lk~~~~~~~~~~~~~~~~~~e~~~~I~ 451 (685)
+...++. +++.|||+.+|++||....|. ..+.|.+-.........+. ...+-++-. ..-....+...+|+
T Consensus 290 ~SrR~re-lWwQGiP~~VRGkvW~laIGN-el~it~elfd~~la~Aker~ak~~aeq~~-------~sa~~re~sv~~i~ 360 (586)
T KOG2223|consen 290 KSRRVRE-LWWQGIPPSVRGKVWSLAIGN-ELNITYELFDIALARAKEREAKSLAEQMS-------NSAADREASVELIK 360 (586)
T ss_pred hhHHHHH-HHHccCChhhcchhhHhhhCc-ccccCHHHHHHHHHHHHHHHHHHHHhhcc-------cchhhhhcchhhee
Confidence 4556776 889999999999999999997 4566666555444332222 333332211 01123345678999
Q ss_pred ccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHHHHHHHHHhhCC--CCCC
Q 005652 452 KDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGP--NFNR 529 (685)
Q Consensus 452 kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~f~~Lm~~~~~--nf~~ 529 (685)
.|+.||||+..+|+.+ +|..+.|..||.+|++|.||+||||||++|+|+|++.| |+.+||-||.+|+++-.. .|..
T Consensus 361 LDisrTfpsl~iFqk~-GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafANLLdkp~q~Aff~~ 438 (586)
T KOG2223|consen 361 LDISRTFPSLSIFQKG-GPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFANLLDKPCQQAFFRV 438 (586)
T ss_pred echhccCcceeeeccC-CchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHHHHhccHHHHHHHhc
Confidence 9999999999999975 78999999999999999999999999999999999999 699999999999998544 6888
Q ss_pred CchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 005652 530 DQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAIL 609 (685)
Q Consensus 530 d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~~~~~fll~valAIL 609 (685)
|++.|...+.+|+..++...|+|+.||++.++.+..|.+.|+.++|+..+|++.++||||+|..+ ++.|++..+++||
T Consensus 439 d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rd--geeFlfr~~lgIl 516 (586)
T KOG2223|consen 439 DHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRD--GEEFLFRTALGIL 516 (586)
T ss_pred CcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeec--chHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999977 7789999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005652 610 KRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALC 650 (685)
Q Consensus 610 ~~~r~~Il~~~~dfdeilk~l~~L~~~id~~~lL~~A~~L~ 650 (685)
+.+++.|+ .|||..+.+|+..+|.++..+++...-..+.
T Consensus 517 klyepkLl--~mDf~~~~qfLtklp~dL~~eelF~~i~~~~ 555 (586)
T KOG2223|consen 517 KLYEPKLL--VMDFIHVAQFLTKLPEDLTPEELFMHIAYIQ 555 (586)
T ss_pred HHccchHh--hhhHHHHHHHHHhCcccCCHHHHHHHHHHHh
Confidence 99999999 7799999999999999998888765554444
No 10
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=332.66 Aligned_cols=247 Identities=32% Similarity=0.558 Sum_probs=209.0
Q ss_pred CCCCHHHHHHhhhcCCCC---CChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhh
Q 005652 354 PPLGSEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 430 (685)
Q Consensus 354 ~plt~~~W~~~~d~~g~~---~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~ 430 (685)
.+.....|...++..+.. ....+++.++ +.|||+++|+.||.+++|++++... ....|..+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~gip~~~r~~vw~~~~~~~~~~~~----------~~~~y~~~~~~~~ 247 (496)
T COG5210 179 ELAADKLWISYLDPNPLSFLPVQLSKLRELI-RKGIPNELRGDVWEFLLGIGFDLDK----------NPGLYERLLNLHR 247 (496)
T ss_pred hhHHHHHHHHHHhcccchhhhhhHHHHHHHH-HhcCChHhhhhhHHHHhccchhhcc----------CchHHHHHHHHHH
Confidence 344567788988887762 5677888855 7889999999999999999776432 3455555554322
Q ss_pred cCChHHHhhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchh
Q 005652 431 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDES 510 (685)
Q Consensus 431 ~~~~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~ 510 (685)
..... ..+..++|++||.||+|.+..|+.+.+.+...|+|||.+|+.+||++||||||++|++|||++|.+|+
T Consensus 248 ~~~~~-------~~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee 320 (496)
T COG5210 248 EAKIP-------TQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEE 320 (496)
T ss_pred hcCCC-------cHHHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhH
Confidence 11000 00346799999999999999999877765556999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHHh--hCCCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHH
Q 005652 511 QSFWCFVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 588 (685)
Q Consensus 511 ~AFw~f~~Lm~~--~~~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLW 588 (685)
.|||||++||+. +..+|..+++|++.++.++..+++.++|+||+||...|+....|+++||+++|.++||++.++|||
T Consensus 321 ~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriw 400 (496)
T COG5210 321 QAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIW 400 (496)
T ss_pred HHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999993 555899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHhcCC
Q 005652 589 EVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQ 620 (685)
Q Consensus 589 D~~l~~~~~~~fll~valAIL~~~r~~Il~~~ 620 (685)
|++|+++ ..+++.+++|++...+..++...
T Consensus 401 D~lf~eg--~~~l~~~~~~~l~~~~~~l~~~~ 430 (496)
T COG5210 401 DCLFLEG--SSMLFQLALAILKLLRDKLLKLD 430 (496)
T ss_pred HHHHHhc--cHHHHHHHHHHHHhhhhhhhccC
Confidence 9999985 46888899999999999988654
No 11
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=8.7e-34 Score=285.11 Aligned_cols=212 Identities=33% Similarity=0.615 Sum_probs=167.8
Q ss_pred chhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhcccccceeccccccCCCCcccCCC
Q 005652 388 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGD 467 (685)
Q Consensus 388 ~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~ 467 (685)
+++|+.||+.|+|+.+ .. ...|...+.++...............+...+|++||.||+++...+.
T Consensus 1 ~~~R~~vW~~ll~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~-- 65 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEP----NY---------SNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFK-- 65 (214)
T ss_dssp -CCHHHHHHHHCTCSC----HH---------HHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCST--
T ss_pred CChHHHHHHHHHccch----hh---------hhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhh--
Confidence 4689999999999965 11 11111111111111111111222334557899999999999554444
Q ss_pred CChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHHHHHHHH-HhhCCCCCCCchhHHHHHHHHHHHHH
Q 005652 468 DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALM-ERLGPNFNRDQNGMHSQLFALSKLVE 546 (685)
Q Consensus 468 ~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~f~~Lm-~~~~~nf~~d~~gm~~~l~~l~~LL~ 546 (685)
...+++.|.+||.+|+.++|++||||||++|++++++++.+|++|||||+++| ......|..+.++++..+..++.+++
T Consensus 66 ~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 145 (214)
T PF00566_consen 66 NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLK 145 (214)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHH
Confidence 46788999999999999999999999999999999988889999999999999 44566777888999999999999999
Q ss_pred hhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHHHHh
Q 005652 547 LLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHL-HLYVCVAILKRYRNKIM 617 (685)
Q Consensus 547 ~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~~~~~f-ll~valAIL~~~r~~Il 617 (685)
.++|+|+.||++.|+++..|+++|++++|++++|++.++|||| ++.+++ ++ ++++|+|||...|++||
T Consensus 146 ~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~--~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 146 KHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGY--KFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp HHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCT--THHHHHHHHHHHHHTHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCC--CcHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 555643 45 89999999999999997
No 12
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=3.8e-30 Score=270.57 Aligned_cols=261 Identities=22% Similarity=0.426 Sum_probs=219.0
Q ss_pred HHHhhhcCCCCCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhh
Q 005652 361 WTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRF 440 (685)
Q Consensus 361 W~~~~d~~g~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~~~~ 440 (685)
|+-+ +|-....++++..+-.||||+.+|+..|+.|.|... -++.....|+.+.++.......
T Consensus 149 w~hi---~~~~~ktdk~~~llkeggiphslr~~lw~rlsga~~----------kkk~ae~sy~~ilk~~andk~~----- 210 (848)
T KOG2222|consen 149 WEHI---DGMELKTDKFEELLKEGGIPHSLRAFLWMRLSGALA----------KKKDAETSYEDILKACANDKLM----- 210 (848)
T ss_pred HHhh---cccccchHHHHHHHHcCCCCcchhHHHHHHhhhhhh----------hhccccccHHHHHHHhcccccc-----
Confidence 5544 355567788888777789999999999999999732 2223345688887765432211
Q ss_pred hhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHHHHHHHH
Q 005652 441 TKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALM 520 (685)
Q Consensus 441 ~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~f~~Lm 520 (685)
.-.||++|+.|+.|++..|..+++.+...|+|||.+.++..|++||||||.-|+|.+|++|+ |+.|||++..++
T Consensus 211 -----~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~-ee~afwmmaaii 284 (848)
T KOG2222|consen 211 -----IGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE-EENAFWMMAAII 284 (848)
T ss_pred -----hhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-chhHHHHHHHHH
Confidence 23599999999999999999999999999999999999999999999999999999999995 899999999999
Q ss_pred HhhCC-CCC-CCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhccch
Q 005652 521 ERLGP-NFN-RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSE 598 (685)
Q Consensus 521 ~~~~~-nf~-~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~~~~ 598 (685)
+.+.+ ||+ .+.-|++..-.+...|++.+.|.|-+-|+.+++...+....||+|+|...|.....+||||.||.+ |.
T Consensus 285 edilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~--g~ 362 (848)
T KOG2222|consen 285 EDILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYE--GG 362 (848)
T ss_pred HHhcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheec--Cc
Confidence 99876 555 556799999999999999999999999999999999999999999999999999999999999966 55
Q ss_pred hHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 005652 599 HLHLYVCVAILKRYRNKIMGE---QMDFDTLLKFINELSGRI-DLDAILRDAE 647 (685)
Q Consensus 599 ~fll~valAIL~~~r~~Il~~---~~dfdeilk~l~~L~~~i-d~~~lL~~A~ 647 (685)
--++.+.+.||+..++.|... .-+..+|..-+.++|... |++.++..|-
T Consensus 363 i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~ 415 (848)
T KOG2222|consen 363 INIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAG 415 (848)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHh
Confidence 567789999999999888643 125678888888888654 7777776654
No 13
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.96 E-value=3e-28 Score=262.68 Aligned_cols=241 Identities=22% Similarity=0.375 Sum_probs=208.4
Q ss_pred HhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhcccccceeccccccCCCC
Q 005652 382 FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSV 461 (685)
Q Consensus 382 ~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~~~~~~~~e~~~~I~kDV~RT~~~~ 461 (685)
.++|+|+-+|+-+|..||++-. + ....|..+- +..+. ...+||+.|++|+....
T Consensus 352 a~vdvpp~~R~~iW~aLL~l~e-~------------~~a~y~~ID-k~Ts~------------~tdrqievdiprchQyd 405 (725)
T KOG1093|consen 352 AYVDVPPLYRGFIWAALLQLEE-N------------HTAFYTLID-KGTSH------------STDRQIEVDIPRCHQYD 405 (725)
T ss_pred hccCCChhHhHHHHHHHhcCcc-c------------cchhhhhhh-cCCCC------------cchhhhhcccchhhhcc
Confidence 4789999999999999998721 1 123333322 11111 23469999999999888
Q ss_pred cccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHh-cchhhHHHHHHHHHHhhCCC-CCCC-chhHHHHH
Q 005652 462 TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM-EDESQSFWCFVALMERLGPN-FNRD-QNGMHSQL 538 (685)
Q Consensus 462 ~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~-~dE~~AFw~f~~Lm~~~~~n-f~~d-~~gm~~~l 538 (685)
.+.+.++ +++.|+|+|.+++...|..-|.||+..+++||++.. .+|..||-|+..|+-++..+ |..| ..-++..+
T Consensus 406 ~~lsSp~--~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~fflkdns~vikeyL 483 (725)
T KOG1093|consen 406 ELLSSPK--GHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHFFLKDNSNVIKEYL 483 (725)
T ss_pred cccCCHH--HHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Confidence 7777654 679999999999999999999999999999998875 57999999999999998875 5554 45788999
Q ss_pred HHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhc
Q 005652 539 FALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMG 618 (685)
Q Consensus 539 ~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~~~~~fll~valAIL~~~r~~Il~ 618 (685)
..|.+++.++||+|++||..+|+.+.+|+++||+|+|+++||.+.++.|||-++.++. .|.+++++||+...|+.|+.
T Consensus 484 s~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~--SFplmi~vAil~~lR~~LLa 561 (725)
T KOG1093|consen 484 SMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHS--SFPLMIGVAILIQLRDPLLA 561 (725)
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999854 59999999999999999997
Q ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Q 005652 619 EQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE 655 (685)
Q Consensus 619 ~~~dfdeilk~l~~L~~~id~~~lL~~A~~L~~~~~e 655 (685)
+ +|.|++-+|.++| ++|++.+++..+.++...+.
T Consensus 562 ~--nfne~illf~d~p-dldId~~Ires~~l~e~tP~ 595 (725)
T KOG1093|consen 562 C--NFNECILLFSDLP-DLDIDVCIRESYHLMETTPK 595 (725)
T ss_pred C--CchhheeeeccCC-cccHHHHHHHHhhhhhCCCC
Confidence 7 8999999999999 99999999999999986544
No 14
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-26 Score=250.10 Aligned_cols=262 Identities=25% Similarity=0.352 Sum_probs=205.6
Q ss_pred chhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCC---------------------hHHHhhhhhhccc
Q 005652 388 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS---------------------PEQARRFTKFRER 446 (685)
Q Consensus 388 ~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~---------------------~~~~~~~~~~~e~ 446 (685)
...|+.+|+.+||+.|.+.+.. ..-.+..+..|.+++......+ ..-+.++....|.
T Consensus 27 s~~Rgv~Wrl~L~vLp~~~ss~--id~~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL 104 (625)
T KOG1091|consen 27 SNLRGVRWRLLLGVLPSENSSW--IDNLRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAEL 104 (625)
T ss_pred hhhhhHHHHHhheecCCCchhH--HHHHHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHH
Confidence 3579999999999999874433 3333455666766654432211 1113344455677
Q ss_pred ccceeccccccCCCC-cccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcc-----------------
Q 005652 447 KGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED----------------- 508 (685)
Q Consensus 447 ~~~I~kDV~RT~~~~-~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~d----------------- 508 (685)
...|++||.||||.+ .||+.+.. +..|++||..|+.-+|.+||-|||+.|+||+++|...
T Consensus 105 ~~~i~qDvsRtfPe~~~fFqs~~~--q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~ 182 (625)
T KOG1091|consen 105 EKTIDQDVSRTFPEHSLFFQSPEV--QGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLG 182 (625)
T ss_pred HHhhcchhhccCcchhhhhcCchh--hHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcC
Confidence 899999999999999 88887654 5999999999999999999999999999999998731
Q ss_pred -------------hhhHH--HHHHHHHHhhCCCC------------------------CCCchhHHHHHHHHHHHHHhhC
Q 005652 509 -------------ESQSF--WCFVALMERLGPNF------------------------NRDQNGMHSQLFALSKLVELLD 549 (685)
Q Consensus 509 -------------E~~AF--w~f~~Lm~~~~~nf------------------------~~d~~gm~~~l~~l~~LL~~~d 549 (685)
+.+++ -.|+.+|..-..+| ....+-+-.....+..++...|
T Consensus 183 f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D 262 (625)
T KOG1091|consen 183 FEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVD 262 (625)
T ss_pred cchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhcc
Confidence 22333 35555654311111 1112233445556789999999
Q ss_pred hhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHH-HHHhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 005652 550 NPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWE-VLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLK 628 (685)
Q Consensus 550 P~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD-~~l~~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk 628 (685)
+.|+.||...|+.+.+|..||+.++|.||||+.+++.+|| +++.+++...++-++++|||...|+.|+.. +...+|+
T Consensus 263 ~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss--~~~tcL~ 340 (625)
T KOG1091|consen 263 KSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSS--EYQTCLQ 340 (625)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHh--cchhHHH
Confidence 9999999999999999999999999999999999999999 888898888889999999999999999966 6677999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHhcc
Q 005652 629 FINELSGRIDLDAILRDAEALCICAGE 655 (685)
Q Consensus 629 ~l~~L~~~id~~~lL~~A~~L~~~~~e 655 (685)
++.++|..+|++.++++|..+..-++.
T Consensus 341 ~Lm~yP~~~Dv~~~iekAl~l~~~~~K 367 (625)
T KOG1091|consen 341 YLMNYPEIIDVDKFIEKALHLQKLFPK 367 (625)
T ss_pred HHhcCCCcCcHHHHHHHHHHHHHhccc
Confidence 999999999999999999988874444
No 15
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.94 E-value=9.5e-27 Score=258.67 Aligned_cols=257 Identities=21% Similarity=0.412 Sum_probs=217.8
Q ss_pred HHHHHHhhhcCCCC---CChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCCh
Q 005652 358 SEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 434 (685)
Q Consensus 358 ~~~W~~~~d~~g~~---~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~ 434 (685)
.+.|++++.. ++. .+.+.+-.. ++.|||..-|+++|.+|.--+..+.-... .++-..--|+.+..
T Consensus 549 ~~~wek~~e~-~~~~~k~d~ed~~~~-l~~gvprsrrgeiwtflA~q~~~~~~l~~---~kr~~~~p~~~llk------- 616 (948)
T KOG4436|consen 549 IETWEKILER-TRIKIKKDMEDLHSA-LRTGVPRSRRGEIWTFLAEQHSLNHALPD---KKRPPDFPYKELLK------- 616 (948)
T ss_pred HHHHHHHHHH-hhhcccccHHHHHHH-HHccCchhhhHHHHHHHHHHHHHhccCCc---ccCCCCCChHHHHH-------
Confidence 4679998876 444 477778774 48999999999999999854221110000 00011112444433
Q ss_pred HHHhhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHH
Q 005652 435 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 514 (685)
Q Consensus 435 ~~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw 514 (685)
.+.++.+.|..|+-||||+|++|+...+.++..|.|+|.+|+..+|++|||||.++++++||+.| +|+.||-
T Consensus 617 -------qLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afe 688 (948)
T KOG4436|consen 617 -------QLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFE 688 (948)
T ss_pred -------HHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHH
Confidence 34466789999999999999999999999999999999999999999999999999999999999 6999999
Q ss_pred HHHHHHHh--hCCCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 005652 515 CFVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLW 592 (685)
Q Consensus 515 ~f~~Lm~~--~~~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l 592 (685)
++-.||.. ++..|..|+..++-++..+..+++-+++.||+||++++|.+..|+.+||++.|+..||.-.|.|++|.++
T Consensus 689 llk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~f 768 (948)
T KOG4436|consen 689 LLKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIF 768 (948)
T ss_pred HHHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHH
Confidence 99999986 4457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC
Q 005652 593 THYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRI 637 (685)
Q Consensus 593 ~~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~i 637 (685)
.. |..+++.+++++|..++..|++++ +|++|+.|+++....+
T Consensus 769 lq--~tevifK~a~~llsv~k~~l~e~d-n~e~i~d~~k~~~p~~ 810 (948)
T KOG4436|consen 769 LQ--GTEVIFKVALSLLSVHKQLLLEKD-NFEEIVDFLKTTLPKM 810 (948)
T ss_pred hh--ccchhhhhHHHHHHhhHHHHHhhh-hHHHHHHHHHHhhhhh
Confidence 87 667999999999999999999998 9999999998864343
No 16
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=253.79 Aligned_cols=266 Identities=21% Similarity=0.345 Sum_probs=221.2
Q ss_pred HHHHHHhhhcCCCCCCh---HHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCCh
Q 005652 358 SEEWTTFLDNEGRVMDS---NALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 434 (685)
Q Consensus 358 ~~~W~~~~d~~g~~~~~---~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~ 434 (685)
...|.+++..+|+-++. .++++ +.+.|||.+.|+++|..+.|. ..-+..+..+|.++.+....
T Consensus 173 ~k~W~~~f~~~G~~~~~~qt~~~~K-lv~~gipe~~rgeiW~l~sGa----------v~~~l~~~Geygkll~~~~G--- 238 (671)
T KOG4347|consen 173 EKFWKKYFIKDGPNMNQIQTILLRK-LLYNGFPEDPRGEIWYLASGA----------VASLLLNPGEYGKLLHSVTG--- 238 (671)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHH-HHHHhcCCChHHHHHHhhhHH----------HHHhhcCcHHhhhhhhcccC---
Confidence 35699999999987654 56777 669999999999999999997 44556678899988875433
Q ss_pred HHHhhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHH
Q 005652 435 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 514 (685)
Q Consensus 435 ~~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw 514 (685)
+-......|++|+.|..|+++-|+.+. +...|+|||.+|++.||++||||-||-+++.+|+++ .|++|||
T Consensus 239 -------~~~~a~eEIE~Dl~rsLpEhpA~Q~e~--gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~-~EEeafw 308 (671)
T KOG4347|consen 239 -------KRSVATEEIEPDLGRSLPEHPAFQSEP--GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFC-KEEEAFW 308 (671)
T ss_pred -------CcccccccccCCCCCCCCcchhhhCCC--chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhh-ccchHHH
Confidence 122334689999999999999999865 559999999999999999999999999999999998 5999999
Q ss_pred HHHHHHHhhCCC-CCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 005652 515 CFVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWT 593 (685)
Q Consensus 515 ~f~~Lm~~~~~n-f~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~ 593 (685)
+++.+.+++.+. |..+.-|-.....+++.|++...|.|+.|+...| ........||+++|...+|++..+||-|+|+.
T Consensus 309 ll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~ 387 (671)
T KOG4347|consen 309 LLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFY 387 (671)
T ss_pred HHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhh
Confidence 999999998775 4555667777777899999999999999999999 66678999999999999999999999999997
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCC----------------CCCCHHHHHHHHHHHHH
Q 005652 594 HYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELS----------------GRIDLDAILRDAEALCI 651 (685)
Q Consensus 594 ~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~----------------~~id~~~lL~~A~~L~~ 651 (685)
+ |...++-+++|||+.+.+.|+.+. |=.+++..+.++- ..+.+.++|..|..-|.
T Consensus 388 e--G~rvlFqiaLail~~N~~~il~~~-dDge~~~vl~~y~~~i~~~~~~~~~~~~~~~~~i~~Ll~~ay~kFg 458 (671)
T KOG4347|consen 388 E--GPRVLFQIALAILKQNAERILSAT-DDGEAMMVLGNYFDSIYNGDYPDESDHASDSIEIQDLLATAYEKFG 458 (671)
T ss_pred c--ccHHHHHHHHHHHHhhHHHhcccC-CchHHHHHHHHHHHhccCCCCCccccchhhhhHHHHHHHHHHHHhc
Confidence 7 668999999999999999999987 4455555554432 12346677777766554
No 17
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-23 Score=211.41 Aligned_cols=256 Identities=18% Similarity=0.238 Sum_probs=201.9
Q ss_pred CChHHHHHHHHh-CC-CCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhcccccc
Q 005652 372 MDSNALRKRIFY-GG-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 449 (685)
Q Consensus 372 ~~~~~Lk~~i~~-~G-Ip~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~~~~~~~~e~~~~ 449 (685)
.+.+.|++.-.. +| +.+++|+.||+.|+|+.-..... ..|.+..+. .+..+|
T Consensus 46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~~-----------~~~~~~~q~---------------hkd~nQ 99 (395)
T KOG2595|consen 46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLDA-----------TSTLTPVQK---------------HKDYNQ 99 (395)
T ss_pred ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCcc-----------cccCChhhh---------------Ccccce
Confidence 577888874333 34 37899999999999973322211 111111111 122469
Q ss_pred eeccccccCCCCccc--CCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHHHHHHHHHhh-CCC
Q 005652 450 IDKDVVRTDRSVTFF--DGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERL-GPN 526 (685)
Q Consensus 450 I~kDV~RT~~~~~~F--~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~f~~Lm~~~-~~n 526 (685)
+..||+|++...+.= .......++.|..++...-..||.+.|.||.+|||..+|+++. |.+|+-....+-... ++.
T Consensus 100 V~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-E~~Al~l~E~L~~~~lrdf 178 (395)
T KOG2595|consen 100 VILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-ELEALSLMEELSTLHLRDF 178 (395)
T ss_pred EEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-hHhhhHHHHHHHHHHHHHH
Confidence 999999998654320 0011235567777777777889999999999999999999995 999998888877543 334
Q ss_pred CCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCc-HHHHHHHHHHHHhhccchhHHHHHH
Q 005652 527 FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE-YEKTMRLWEVLWTHYLSEHLHLYVC 605 (685)
Q Consensus 527 f~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp-~~~vlrLWD~~l~~~~~~~fll~va 605 (685)
+.+++.+..+++..+..+++..+|+||+.|++.++++. |+..|++|||++.+. +..|+||+|.|++..+ -..+|++
T Consensus 179 M~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgtl-FaLsWllTWFaH~L~~~~~vvRlfD~Flas~p--l~piyv~ 255 (395)
T KOG2595|consen 179 MLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGTL-FALSWLLTWFAHNLKDIRIVVRLFDFFLASHP--LLPIYVY 255 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccce-ehhhHHHHHHhhcchhHHHHHHHHHHHHhcCc--chhHHHH
Confidence 56778888999999999999999999999999999884 999999999999997 8999999999998854 4789999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccCC
Q 005652 606 VAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENG 657 (685)
Q Consensus 606 lAIL~~~r~~Il~~~~dfdeilk~l~~L~~~id~~~lL~~A~~L~~~~~e~~ 657 (685)
.|++...+++|+++..|+.-+..++..+|.++..+++|+.+-.++.+.+.+.
T Consensus 256 A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s~~~i~~~~~t~ 307 (395)
T KOG2595|consen 256 AAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKESVLLITRKPATL 307 (395)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHHHHHHhcCChhh
Confidence 9999999999999988899999999999999999999999988887554443
No 18
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.89 E-value=4.2e-23 Score=226.04 Aligned_cols=239 Identities=25% Similarity=0.434 Sum_probs=195.9
Q ss_pred ChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhcccccceec
Q 005652 373 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDK 452 (685)
Q Consensus 373 ~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~~~~~~~~e~~~~I~k 452 (685)
...++.. ....|||.++|..+|..+++.-- +.. . ....+....+.....+. ...+| +
T Consensus 134 ~~~~l~~-~~~~gip~~~r~~~W~l~~~~~~--------~~~-~--~~~~~l~~~~~~~~~~~----------~~~~~-~ 190 (397)
T KOG1102|consen 134 RPLKLSR-RVLVGIPDELRGLVWQLLLYAVE--------ESL-F--DSLDELYRLQLDEPEPH----------ESEII-R 190 (397)
T ss_pred cHHHHHH-HhhccccHHHHHHHHHHhcccHh--------hhh-h--hhHHHHHHHhhccCCCc----------hhHHH-h
Confidence 4556665 44799999999999999998510 000 0 11111111111111111 12356 9
Q ss_pred cccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHHHHHHHHHhhC-CCCCCCc
Q 005652 453 DVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLG-PNFNRDQ 531 (685)
Q Consensus 453 DV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~f~~Lm~~~~-~nf~~d~ 531 (685)
|+.||+|.+..|....+.+++.|.+||.+|+.|++++||||||..++++++.++. |++|||.++.+|.... ..|...+
T Consensus 191 d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~lv~l~~~~~~~~~~~~~ 269 (397)
T KOG1102|consen 191 DLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPLLVKLMKNYGLDLLSPGF 269 (397)
T ss_pred hccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhhhhhhhhccchhcccccC
Confidence 9999999999999988889999999999999999999999999999999999996 9999999999998753 3456677
Q ss_pred hhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 005652 532 NGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 611 (685)
Q Consensus 532 ~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~~~~~fll~valAIL~~ 611 (685)
.+++..+..+..+++...|.++.|+...++...+|+.+|++|+|...+|++.++|+||+++.++ ...++.+++|+++.
T Consensus 270 ~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g--~~i~~~~~~~l~~~ 347 (397)
T KOG1102|consen 270 SGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEG--VSILFRFSLALLKH 347 (397)
T ss_pred CchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhc--hHHHHHHHHHHhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999986 57889999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHhC-CCCCCH
Q 005652 612 YRNKIMGEQMDFDTLLKFINEL-SGRIDL 639 (685)
Q Consensus 612 ~r~~Il~~~~dfdeilk~l~~L-~~~id~ 639 (685)
..+.++. .+++.+++++.+. +...+.
T Consensus 348 ~~~~~~~--~~~e~~~~~l~~~~~~~~~~ 374 (397)
T KOG1102|consen 348 KADDLLD--LDFESLLSYLRVDLPKSYDS 374 (397)
T ss_pred hhHHHhh--ccHHHHHHHHhcccHhhcCc
Confidence 9999995 4899999999874 333433
No 19
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.2e-20 Score=183.11 Aligned_cols=190 Identities=20% Similarity=0.360 Sum_probs=156.2
Q ss_pred HHHHHHhhhcCCCC--CChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChH
Q 005652 358 SEEWTTFLDNEGRV--MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 435 (685)
Q Consensus 358 ~~~W~~~~d~~g~~--~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~ 435 (685)
+.+|--++|++... ...++++-++ ++|||+.+|+..|++|.|.+..- .+++..|..+..+- .
T Consensus 75 eskwL~mldnw~~~m~kk~~~ir~rc-rkgippslr~Raw~ylsGa~~~~----------~~np~~~~~~~~~p-----G 138 (267)
T KOG2221|consen 75 ESKWLHMLDNWHEEMRKKQKKIRPRC-RKGIPPSLRGRAWRYLSGAPSPP----------PKNPVVFDELGPAP-----G 138 (267)
T ss_pred HHHHHHHHHHHHHHHHhccccccchh-hcCCCcccchhHHHhhcCCCCCC----------CCCcchhhhccCCC-----C
Confidence 35677777765433 2345577654 99999999999999999985432 22455555554321 1
Q ss_pred HHhhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHHH
Q 005652 436 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 515 (685)
Q Consensus 436 ~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~ 515 (685)
. .. ....|.+|++|-||+|.+|......+.+.|.|+|.+|..|+|+.||||+-.-|++.++..|. +.+||||
T Consensus 139 ~----p~---t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-~rdaf~~ 210 (267)
T KOG2221|consen 139 D----PK---TAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-ARDAFWC 210 (267)
T ss_pred C----Cc---chhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-HHHHHHH
Confidence 1 11 23479999999999999999988888999999999999999999999999999999999995 8899999
Q ss_pred HHHHHHhhCC-CCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHH
Q 005652 516 FVALMERLGP-NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWV 571 (685)
Q Consensus 516 f~~Lm~~~~~-nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWf 571 (685)
|+.+.+.+.+ .|......++..-..|..|++..+|..|.||....+++..|...||
T Consensus 211 ~vqicekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 211 FVQICEKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 9999999877 4556678888888899999999999999999999999999999997
No 20
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.51 E-value=5.3e-14 Score=157.92 Aligned_cols=251 Identities=18% Similarity=0.273 Sum_probs=200.6
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHh
Q 005652 359 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 438 (685)
Q Consensus 359 ~~W~~~~d~~g~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~~ 438 (685)
+.|+.. +.....+|+.+| .+|+|+..|-.+|..|+..... ++ ..-.+.|.+++.. +..+++
T Consensus 164 ~~~E~~-----r~~s~~~l~e~V-e~~~p~~frli~~qlLssatd~-------~q--~~I~e~~sdl~~~----s~~~Ek 224 (948)
T KOG4436|consen 164 DLWERC-----RKKSLHKLKELV-EGGIPMHFRLIRWQLLSSATDR-------EQ--ALIFEDYSDLAPC----SSQQEK 224 (948)
T ss_pred hhhhhh-----hhhchhhhHHHH-hcCCchHHHHHHHHHhcccccc-------hh--hHHHHHHHHHhhh----cchhhh
Confidence 467654 334567788855 9999999999999999986321 11 1124566666643 222222
Q ss_pred hhhhhcccccceeccccccCCCCcccCCCCCh-------hhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhh
Q 005652 439 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNP-------NVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 511 (685)
Q Consensus 439 ~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~-------~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~ 511 (685)
. .+...|..|+.||.+.|.+|.+.... ++..|+|+..+|+...-+.|||||-+.+++.+++.+ +++.
T Consensus 225 ~-----~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~ 298 (948)
T KOG4436|consen 225 E-----LHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQM-PVEE 298 (948)
T ss_pred h-----HHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcC-cHHH
Confidence 1 23458999999999999999987655 689999999999999999999999999999999999 5999
Q ss_pred HHHHHHHHHHhh--CCCCCCCchhHHHHHHHHHHHHHhhCh-hHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHH
Q 005652 512 SFWCFVALMERL--GPNFNRDQNGMHSQLFALSKLVELLDN-PLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 588 (685)
Q Consensus 512 AFw~f~~Lm~~~--~~nf~~d~~gm~~~l~~l~~LL~~~dP-~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLW 588 (685)
+|..++.+|..+ ...+.+.+..+-.++..+....+-..| .|+.|+.+.++....|.-.||++.|...||+...-++.
T Consensus 299 assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~ 378 (948)
T KOG4436|consen 299 ASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARIS 378 (948)
T ss_pred HHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccc
Confidence 999999999865 446778788888888899999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHh-CCCCC
Q 005652 589 EVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINE-LSGRI 637 (685)
Q Consensus 589 D~~l~~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~-L~~~i 637 (685)
|+|..+ |..+.+++.+|++...++.=.. ..|++..+++++. .+.+.
T Consensus 379 ~~f~~e--gllk~fr~~ia~~~~~~d~~~~-s~D~EG~~~~~qr~~s~~v 425 (948)
T KOG4436|consen 379 DTFSSE--GLLKRFRDSIAYLHQLRDIELE-SLDMEGMLSYFQRNRSNTV 425 (948)
T ss_pred cccccc--cHHHHHhhhHHHHHHHhhhhhh-ccCccccccchhhcccccc
Confidence 999977 5556679999999433433333 3499999999874 34343
No 21
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.49 E-value=2.5e-13 Score=143.75 Aligned_cols=203 Identities=18% Similarity=0.301 Sum_probs=151.3
Q ss_pred ceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCccc--chhHHHHHHHHHhcchhhHHHHHHHHHHhhCCC
Q 005652 449 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ--GMSDLLSPILFVMEDESQSFWCFVALMERLGPN 526 (685)
Q Consensus 449 ~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQ--GM~dL~aplL~v~~dE~~AFw~f~~Lm~~~~~n 526 (685)
+|.+|..|-.-...-=.++..+.+..|..++.-|+. +.++.|.. |...|+-||+..-..-.+.|-||.++|+++.+.
T Consensus 69 ~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPk 147 (669)
T KOG3636|consen 69 ALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPK 147 (669)
T ss_pred HHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCC
Confidence 445555443222222222234445577778766653 45666664 445678888888777899999999999997663
Q ss_pred CCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhccchhHHHHHHH
Q 005652 527 FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCV 606 (685)
Q Consensus 527 f~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~~~~~fll~val 606 (685)
=.+ .-..-+..|+-||+.++|+|+.||+...+++.+|+..||-++|+...+.+.+..|||.++-.... -+++|+++
T Consensus 148 dcr---pkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDP-F~vffLal 223 (669)
T KOG3636|consen 148 DCR---PKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADP-FLVFFLAL 223 (669)
T ss_pred CCC---CCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc-eehHHHHH
Confidence 222 11234556899999999999999999999999999999999999999999999999999977543 36778899
Q ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHhCCCCC---CHHHHHHHHHHHHHHhccC
Q 005652 607 AILKRYRNKIMGEQMD-FDTLLKFINELSGRI---DLDAILRDAEALCICAGEN 656 (685)
Q Consensus 607 AIL~~~r~~Il~~~~d-fdeilk~l~~L~~~i---d~~~lL~~A~~L~~~~~e~ 656 (685)
.||..-|++|++.+.+ -+|++||+.+.|..+ |+.++...|+......++.
T Consensus 224 iiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~~KTP~s 277 (669)
T KOG3636|consen 224 IILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYSDKTPES 277 (669)
T ss_pred HHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHhhcChHH
Confidence 9999999999976544 679999999998776 5667778787665544443
No 22
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=5e-08 Score=99.25 Aligned_cols=254 Identities=17% Similarity=0.244 Sum_probs=168.3
Q ss_pred ChHHHHHHHHhCCC---CchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhcccccc
Q 005652 373 DSNALRKRIFYGGV---DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 449 (685)
Q Consensus 373 ~~~~Lk~~i~~~GI---p~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~~~~~~~~e~~~~ 449 (685)
...+||+ +.+.|- .+.+|+.|+..|..-.|...... ....|.++..+.........-....+
T Consensus 31 elqelkq-larqgywaqshalrgkvyqrlirdipcrtvtp--------dasvysdivgkivgkhsssclplpef------ 95 (559)
T KOG2801|consen 31 ELQELKQ-LARQGYWAQSHALRGKVYQRLIRDIPCRTVTP--------DASVYSDIVGKIVGKHSSSCLPLPEF------ 95 (559)
T ss_pred hHHHHHH-HHhcchHHhhhhhhhHHHHHHHhcCCccccCC--------chhHHHHHHHHHhccCCcccccchhh------
Confidence 3456776 567776 67899999999998777532111 13456666554322111000000000
Q ss_pred eeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHHHHHHHHHhhCC---C
Q 005652 450 IDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGP---N 526 (685)
Q Consensus 450 I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~f~~Lm~~~~~---n 526 (685)
|..|- .+-|-- +..+....+.||.+.+..-|+|.+|..+..+++.+|.+.-||+++|---+.++.--.+ .
T Consensus 96 ----vdntq--vpsycl-nargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrl 168 (559)
T KOG2801|consen 96 ----VDNTQ--VPSYCL-NARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRL 168 (559)
T ss_pred ----cccCc--Cchhhh-cCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhh
Confidence 01110 011110 1224467899999999999999999999999999999988999988776666542211 1
Q ss_pred CCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhccchhHHHHHHH
Q 005652 527 FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCV 606 (685)
Q Consensus 527 f~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~~~~~fll~val 606 (685)
.....-.....+.+|..|+..+....++.+-...-+.....-.|-..+| .++|+-...|++|+|+.++ .+.++++++
T Consensus 169 idqsflafesscmtfgdlvnkycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflveg--ykvlyrval 245 (559)
T KOG2801|consen 169 IDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEG--YKVLYRVAL 245 (559)
T ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecc--hHHHHHHHH
Confidence 1122234456666788888888777666665444444444556665555 5799999999999999984 579999999
Q ss_pred HHHHHHHHHHhcCCCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005652 607 AILKRYRNKIMGEQMD----FDTLLKFINELSGRIDLDAILRDAEALCI 651 (685)
Q Consensus 607 AIL~~~r~~Il~~~~d----fdeilk~l~~L~~~id~~~lL~~A~~L~~ 651 (685)
|||+.+.+.--..-.+ -.+|-.|++++..+...++++.+|.++..
T Consensus 246 ailkffhkvragqplesdsvkqdirtfvrdiaktvspekllekafairl 294 (559)
T KOG2801|consen 246 AILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRL 294 (559)
T ss_pred HHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 9999988765433323 34677888899889999999999987754
No 23
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=97.54 E-value=7.2e-05 Score=84.57 Aligned_cols=84 Identities=36% Similarity=0.648 Sum_probs=73.6
Q ss_pred CCCCCCCHHHHHHhhhcCCCCCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhh
Q 005652 351 PRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 430 (685)
Q Consensus 351 ~r~~plt~~~W~~~~d~~g~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~ 430 (685)
.+..+++-++|...|+.+|+..+..++-+++..+||++.+|++||.+|+|+|+.+++.++|..++...+..|.+++.+..
T Consensus 43 ~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c~ 122 (488)
T KOG2197|consen 43 KPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVCQ 122 (488)
T ss_pred ccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHcc
Confidence 44567778999999999999986666666688899999999999999999999999999999999999999999998876
Q ss_pred cCCh
Q 005652 431 SISP 434 (685)
Q Consensus 431 ~~~~ 434 (685)
.+.+
T Consensus 123 ~~~~ 126 (488)
T KOG2197|consen 123 MMKS 126 (488)
T ss_pred hhhh
Confidence 5433
No 24
>PF14961 BROMI: Broad-minded protein
Probab=96.68 E-value=0.024 Score=68.73 Aligned_cols=172 Identities=17% Similarity=0.287 Sum_probs=116.4
Q ss_pred HHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcc-hhhHHHHHHHHHHhhCC--------CC---CCC---chhHHH--
Q 005652 474 LLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED-ESQSFWCFVALMERLGP--------NF---NRD---QNGMHS-- 536 (685)
Q Consensus 474 ~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~d-E~~AFw~f~~Lm~~~~~--------nf---~~d---~~gm~~-- 536 (685)
.-.+||..|..++..-+| .|..-.++.++++|.. -+.+.-.+..|-..+.. .. .+. .+|++-
T Consensus 1085 s~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~ 1163 (1296)
T PF14961_consen 1085 SSLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVY 1163 (1296)
T ss_pred chhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchh
Confidence 334455555555555455 4777778888777743 33343333333222111 11 111 234432
Q ss_pred --HHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 005652 537 --QLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRN 614 (685)
Q Consensus 537 --~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~~~~~fll~valAIL~~~r~ 614 (685)
.+..++.+|+...|.+|.-|...|..+...|.||+.-+|=..++|..++...=+.+.- |.+|.+|+|+|+|+...+
T Consensus 1164 ~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~--G~dyqvY~~VailkHlq~ 1241 (1296)
T PF14961_consen 1164 FCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILY--GPDYQVYICVAILKHLQP 1241 (1296)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhc--CccceeehhHHHHHHhhH
Confidence 3456899999999999999999999999999999999999999998887766555544 668999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 005652 615 KIMGEQMDFDTLLKFINELS-GRIDLDAILRDAEAL 649 (685)
Q Consensus 615 ~Il~~~~dfdeilk~l~~L~-~~id~~~lL~~A~~L 649 (685)
.|+++. .-.++.-|+++-+ ..+.+.+-+.-.+.|
T Consensus 1242 ~ilq~~-q~q~L~~flke~~l~gF~~~~~~~yM~~L 1276 (1296)
T PF14961_consen 1242 EILQHT-QTQDLQVFLKEEALRGFRVSDYLEYMENL 1276 (1296)
T ss_pred HHHHhh-hhchHHHHhhhccccceeHHhHHHHHHHH
Confidence 999875 4455777777643 234555444444433
No 25
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=93.42 E-value=0.027 Score=60.82 Aligned_cols=34 Identities=59% Similarity=1.096 Sum_probs=32.0
Q ss_pred CCcccchhHHHHHHHHHhcchhhHHHHHHHHHHh
Q 005652 489 LGYCQGMSDLLSPILFVMEDESQSFWCFVALMER 522 (685)
Q Consensus 489 lGYvQGM~dL~aplL~v~~dE~~AFw~f~~Lm~~ 522 (685)
+|..|||+|++||+|.-..||.++||||+++|.+
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 6888999999999999888999999999999984
No 26
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=59.97 E-value=54 Score=27.90 Aligned_cols=65 Identities=14% Similarity=0.299 Sum_probs=43.2
Q ss_pred CCceEEEEeeCCceeEEEEecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCC--cCCceEe
Q 005652 64 ISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGL--AFPPLYF 141 (685)
Q Consensus 64 i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~Si~~~~p~~Gw~~~ii~~~~g~--~~P~L~F 141 (685)
.+|.|.|... .-.+.|+|+...+ .. ..+|++.+|..++..|++..---+-|+.+++. .--.++|
T Consensus 12 ~~G~L~l~~d--~~~~~W~~~~~~~----------~~--~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~~~~~~~f~F 77 (79)
T PF08567_consen 12 KDGTLTLTED--RKPLEWTPKASDG----------PS--TVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDSSEESKTFVF 77 (79)
T ss_dssp EEEEEEEETT--CSSEEEEECCSSS----------SS--EEEEETTTEEEEEE--TTSSTEEEEEEETTSC---CCCEEE
T ss_pred CCcEEEEecC--CceEEEeecCCCC----------Cc--eEEEEHHHhhhhccCCCCCcceEEEEEEecCCcccceEEEE
Confidence 4599999744 2248898864433 11 36899999999999999776566788888773 3456666
Q ss_pred e
Q 005652 142 Y 142 (685)
Q Consensus 142 ~ 142 (685)
+
T Consensus 78 ~ 78 (79)
T PF08567_consen 78 T 78 (79)
T ss_dssp -
T ss_pred e
Confidence 5
No 27
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=52.84 E-value=14 Score=32.50 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=27.8
Q ss_pred eeeeCCCeeEEEEeCCC-CCceEEEEEeCCCC
Q 005652 104 RAVPFTEVRSIRRHTPA-FGWQYIIVVLSSGL 134 (685)
Q Consensus 104 ~~v~ls~i~Si~~~~p~-~Gw~~~ii~~~~g~ 134 (685)
..|||++|-.|..++|. .+..|+.|++++|.
T Consensus 27 ~~ipl~~i~gV~~~~pg~~~~G~Lrf~~~~g~ 58 (94)
T PF14472_consen 27 KTIPLSAISGVEWKPPGGLTNGYLRFVLRGGA 58 (94)
T ss_pred EEEEHHHcceEEEEcCCceeEEEEEEEECCcC
Confidence 57999999999999996 78899999998865
No 28
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=52.69 E-value=3.5 Score=45.94 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=74.4
Q ss_pred ceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHHHHHHHHHhhCCCCC
Q 005652 449 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFN 528 (685)
Q Consensus 449 ~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~f~~Lm~~~~~nf~ 528 (685)
.|..|++.|.. +..+.+...+. |.+|..+|+++||| +..+.+ .+.....
T Consensus 2 ~~~~~~~~~~~----~~~~~~~~~~~----l~~~~~~~~~~~~~--~~~~~~---------------------~~~~~~~ 50 (397)
T KOG1102|consen 2 EIDSPVRLTFR----LRPRYGQKQNN----LAAYEPYNPEVGYC--VLHITS---------------------KSDGFQS 50 (397)
T ss_pred CCCcccccccc----CCCCccccccc----ccCCCccccccccc--hhhhhh---------------------ccccccc
Confidence 46778888877 33322221222 89999999999999 666555 1111122
Q ss_pred CCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhhc
Q 005652 529 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY 595 (685)
Q Consensus 529 ~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~~ 595 (685)
.+...................+.-..|+...+ .....+..|..-.|..........++||....++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (397)
T KOG1102|consen 51 SNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEG 116 (397)
T ss_pred CCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhhh
Confidence 22222222222233344455667777888888 7778888999999999988999999999998764
No 29
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=28.43 E-value=1.1e+02 Score=29.11 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=21.2
Q ss_pred CeeEEEEeCCCCCceEEEEEe---CCCCcCCceEe
Q 005652 110 EVRSIRRHTPAFGWQYIIVVL---SSGLAFPPLYF 141 (685)
Q Consensus 110 ~i~Si~~~~p~~Gw~~~ii~~---~~g~~~P~L~F 141 (685)
-+..|-+|.|. |.+-+|..- .||..||.||+
T Consensus 20 gvl~I~~rcp~-g~P~VV~t~p~l~dg~PfPTly~ 53 (167)
T COG1507 20 GVLKIAYRCPY-GEPGVVKTAPKLDDGTPFPTLYY 53 (167)
T ss_pred CceEEEEECCC-CCceEEeecCCCCCCCcCCceee
Confidence 45567777773 544444433 49999999999
No 30
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=28.34 E-value=99 Score=33.00 Aligned_cols=61 Identities=8% Similarity=0.085 Sum_probs=44.6
Q ss_pred hHHHHHHhccCCcchhHHHHHHHhcCCCCc----HHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 005652 551 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 611 (685)
Q Consensus 551 ~L~~hL~~~~i~~~~f~~rWfl~lF~refp----~~~vlrLWD~~l~~~~~~~fll~valAIL~~ 611 (685)
-+|.||+++--.-.+-.|+||-.|...|+- |..++|-|-.++.+..+.-..=|+++|+...
T Consensus 161 tIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~~~~~kLW~RFFLlsVfaT 225 (323)
T cd01047 161 TIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALLRAQPHLLNDGKNKLWIRFFLLSVYAT 225 (323)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHh
Confidence 368899988666667789999999999997 7778888888776543433444566666544
No 31
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=26.93 E-value=3.5e+02 Score=23.25 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=30.6
Q ss_pred CCCCceEEEEe-eCCceeEEEEecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEE
Q 005652 62 ERISGRLKLIK-QGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYII 127 (685)
Q Consensus 62 d~i~G~l~l~~-~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~Si~~~~p~~Gw~~~i 127 (685)
+.-+|.|.|.+ .++-+.+.|.|-+..+. .-..+.|.=.+..-.++...+.|.=|+.
T Consensus 13 d~~KG~l~l~~~~d~l~~f~W~~r~~~~~----------~e~d~il~pg~~~f~~V~~c~tGRVy~L 69 (85)
T PF04683_consen 13 DPRKGLLYLYKSEDGLLHFCWKPRDTTGE----------VEDDLILFPGDATFKKVPQCKTGRVYVL 69 (85)
T ss_dssp -SS-EEEEEEETTTS-EEEEEEETST-------------EEEEEEE-TTTEEEEE-TTSSTS-EEEE
T ss_pred CCCCEEEEEEECCCCeEEEEEEEcCcCCC----------cccceecCCCCeEEEECCcCCCCeEEEE
Confidence 45789999998 46789999999665210 0112334445666555555567766653
No 32
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=25.35 E-value=1.2e+02 Score=32.51 Aligned_cols=61 Identities=10% Similarity=0.189 Sum_probs=42.6
Q ss_pred hHHHHHHhccCCcchhHHHHHHHhcCCCCc----HHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 005652 551 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 611 (685)
Q Consensus 551 ~L~~hL~~~~i~~~~f~~rWfl~lF~refp----~~~vlrLWD~~l~~~~~~~fll~valAIL~~ 611 (685)
-+|.||+++--.-.+-.|+||-.|.-.|+- |..++|-+-.++.+..+.-..=|+++|+...
T Consensus 171 tIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~g~~~kLW~RFFLLsVfaT 235 (337)
T TIGR02029 171 TIYRHLEENPENQFYPIFKYFESWCQDENRHGDAFAALMRSQPQLLNNWKAKLWSRFFLLSVYST 235 (337)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 468899988666667789999999999997 7777777777775422333334556665543
No 33
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=24.31 E-value=51 Score=22.00 Aligned_cols=16 Identities=44% Similarity=0.746 Sum_probs=11.9
Q ss_pred CCcccchhHHHHHHHH
Q 005652 489 LGYCQGMSDLLSPILF 504 (685)
Q Consensus 489 lGYvQGM~dL~aplL~ 504 (685)
-||.||+.|.+--.|.
T Consensus 3 sgyiqgipdflkgylh 18 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYLH 18 (31)
T ss_pred cccccccHHHHHHHHh
Confidence 3899999987765543
No 34
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=23.57 E-value=1.3e+02 Score=32.41 Aligned_cols=61 Identities=7% Similarity=0.129 Sum_probs=42.5
Q ss_pred hHHHHHHhccCCcchhHHHHHHHhcCCCCc----HHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 005652 551 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 611 (685)
Q Consensus 551 ~L~~hL~~~~i~~~~f~~rWfl~lF~refp----~~~vlrLWD~~l~~~~~~~fll~valAIL~~ 611 (685)
-+|.||+++--.-.+-.|+||-.|.-.|+- |..++|-|-.++.+..+.-..=|+++|+...
T Consensus 177 tIyRHLe~~Pe~r~~PIF~~FE~WCqDEnRHGdfF~almraqP~ll~g~~~kLW~RFFLlsVfaT 241 (351)
T CHL00185 177 TIYRHLEKNPEYRIYPIFKFFESWCQDENRHGDFFAALLKSQPHLLNGWKARLWCRFFLLSVFAT 241 (351)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 468899988666667789999999999997 7777777777775422323333556665543
No 35
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=22.90 E-value=1.4e+02 Score=32.27 Aligned_cols=61 Identities=7% Similarity=0.195 Sum_probs=42.1
Q ss_pred hHHHHHHhccCCcchhHHHHHHHhcCCCCc----HHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 005652 551 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 611 (685)
Q Consensus 551 ~L~~hL~~~~i~~~~f~~rWfl~lF~refp----~~~vlrLWD~~l~~~~~~~fll~valAIL~~ 611 (685)
-+|.||+++--.-.+-.|+||-.|.-.|+- |..++|-+-.++.+..+.-+.=|+++|+...
T Consensus 177 tIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnRHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfaT 241 (357)
T PLN02508 177 TIYRHLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYVT 241 (357)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 468899988666666789999999999986 6777777777765422333344566665543
No 36
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=21.58 E-value=1.1e+02 Score=33.09 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=42.9
Q ss_pred hHHHHHHhccCCcchhHHHHHHHhcCCCCc----HHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 005652 551 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 611 (685)
Q Consensus 551 ~L~~hL~~~~i~~~~f~~rWfl~lF~refp----~~~vlrLWD~~l~~~~~~~fll~valAIL~~ 611 (685)
-+|.||+++--.-.+-.|+||-.|.-.|+- |..++|=|-.++.+..+.-+.=|+++|+...
T Consensus 181 tIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmraqP~ll~g~~~kLW~RFFLlsVfaT 245 (355)
T PRK13654 181 TIYRHLEKHPEHRFHPIFKFFENWCQDENRHGDFFALLMRAQPKLLKGWVNRLWIRFFLLAVFAT 245 (355)
T ss_pred HHHHHHHhCcccccCchHHHHHHHhcccchhHHHHHHHHhcCchhhcchHHHHHHHHHHHHHHhh
Confidence 368899988666666789999999999997 7777777777775423333444566666543
No 37
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=21.40 E-value=3.9e+02 Score=23.26 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=47.6
Q ss_pred EEEEeeCCeEEccCcccc-CCCCceEEEEeeCCceeEEEEecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCC
Q 005652 44 ELVYLKDNVTIHPTQFAS-ERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (685)
Q Consensus 44 ~llf~Ks~V~vhpt~~~~-d~i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~Si~~~~p~~G 122 (685)
.++|.+++|-++=..... ..-.|.|.|+-+ -|-|++..+.. .. ..++||++|..+....-.++
T Consensus 15 ~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsH----Rliw~d~~~~~-----------~~-s~~l~L~~i~~~e~~~gf~~ 78 (89)
T PF11605_consen 15 TIVYQQDGVGLYDGDQKTPNFQNGRLYLTSH----RLIWVDDSDPS-----------KH-SIALPLSLISHIEYSAGFLK 78 (89)
T ss_dssp -EEEEEEEEEEEETTECSTT-SCEEEEEESS----EEEEEESSGHC-----------HH--EEEEGGGEEEEEEE-STTS
T ss_pred eEEEEecCeeeEcCCccCccccCCEEEEEee----EEEEEcCCCCc-----------ee-EEEEEchHeEEEEEEccccC
Confidence 789999999999877555 556899999844 68898755432 12 36899999999976655443
Q ss_pred -ceEEEEEe
Q 005652 123 -WQYIIVVL 130 (685)
Q Consensus 123 -w~~~ii~~ 130 (685)
..=|++.+
T Consensus 79 sSpKI~l~l 87 (89)
T PF11605_consen 79 SSPKIILHL 87 (89)
T ss_dssp SS-EEEEEE
T ss_pred CCCeEEEEe
Confidence 22355554
No 38
>PF07024 ImpE: ImpE protein; InterPro: IPR009211 This entry contains proteins of unknown function that occur in bacteria that interact with and manipulate eukaryotic cells []. Salmonella enterica protein SciE is encoded in the centisome 7 genomic island (SCI) []. Deletion of the entire island affects the ability of bacteria to enter eukaryotic cells []. Therefore, SciE and other SCI proteins may be involved in virulence. Interestingly, another member of this family, Rhizobium leguminosarum protein ImpE, has been reported to be encoded by an avirulence locus involved in temperature-dependent protein secretion []. It is believed that the imp locus is involved in the secretion to the environment of proteins, including periplasmic RbsB protein, that cause blocking of R. leguminosarum infection in plants [].; PDB: 1ZBP_A.
Probab=20.24 E-value=81 Score=29.30 Aligned_cols=35 Identities=31% Similarity=0.593 Sum_probs=24.2
Q ss_pred eeCCCeeEEEEeCCCC----CceEEEEEeCCCCc----CCceE
Q 005652 106 VPFTEVRSIRRHTPAF----GWQYIIVVLSSGLA----FPPLY 140 (685)
Q Consensus 106 v~ls~i~Si~~~~p~~----Gw~~~ii~~~~g~~----~P~L~ 140 (685)
||+++|.||++.+|.. =|.-..|.++||.. +|+.|
T Consensus 30 vPf~~I~~l~~~~p~~l~DlvWrpa~i~l~dG~~~~~~iP~rY 72 (123)
T PF07024_consen 30 VPFSRIASLEFEPPASLRDLVWRPAEITLRDGGEGEGFIPARY 72 (123)
T ss_dssp EEGGGEEEEEE----SSGGGTEEEEEEEETTTEEEEEEEE-B-
T ss_pred EEHHHccceecCCCCCHHHhcccceEEEEeCCCeEEEEEeccc
Confidence 8999999999999943 47788999999876 45554
Done!