Query 005652
Match_columns 685
No_of_seqs 320 out of 1706
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 03:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 1E-50 3.4E-55 445.0 26.8 287 358-658 8-387 (396)
2 2qfz_A TBC1 domain family memb 100.0 8.7E-51 3E-55 438.3 24.4 287 358-658 26-341 (345)
3 2qq8_A TBC1 domain family memb 100.0 1.6E-50 5.3E-55 434.4 25.3 286 358-651 21-310 (334)
4 3qye_A TBC1 domain family memb 100.0 8.7E-50 3E-54 428.1 17.1 271 357-649 29-307 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 5.2E-48 1.8E-52 410.7 18.4 261 358-649 5-274 (310)
6 4hl4_A TBC1 domain family memb 100.0 6.4E-46 2.2E-50 391.4 18.4 265 358-654 20-290 (292)
7 3qwl_A TBC1 domain family memb 100.0 7.4E-40 2.5E-44 343.9 20.1 254 360-655 28-288 (294)
8 2cay_A VPS36 PH domain, vacuol 95.6 0.023 7.9E-07 52.8 7.0 104 44-163 30-138 (145)
9 2hth_B Vacuolar protein sortin 94.3 0.36 1.2E-05 44.4 11.3 97 44-157 18-128 (140)
10 1pfj_A TFIIH basal transcripti 89.5 1.1 3.6E-05 39.2 7.6 62 66-145 22-83 (108)
11 3kev_A Galieria sulfuraria DCU 29.8 78 0.0027 30.5 6.0 82 504-594 50-131 (199)
12 4gba_A DCN1-like protein 3; E3 27.6 52 0.0018 32.3 4.3 57 529-594 74-132 (221)
13 3tdu_A DCN1-like protein 1; E2 26.2 40 0.0014 32.6 3.3 57 529-594 73-129 (200)
14 1y5o_A TFB1, RNA polymerase II 25.4 2.3E+02 0.0079 24.7 7.5 56 62-131 10-65 (115)
15 2czy_A Paired amphipathic heli 20.1 39 0.0013 27.3 1.5 67 604-670 6-76 (77)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=1e-50 Score=445.01 Aligned_cols=287 Identities=25% Similarity=0.494 Sum_probs=251.8
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHH
Q 005652 358 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 437 (685)
Q Consensus 358 ~~~W~~~~d~~g~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~ 437 (685)
.++|+++++.+. .++.++||+ ++++|||+.+|+.||++|||+++.+.+ +|+.....++.+|.+++++|......
T Consensus 8 ~~kw~~lL~~~~-~~d~~~Lr~-l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~~-- 81 (396)
T 1fkm_A 8 ISKFDNILKDKT-IINQQDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQHS-- 81 (396)
T ss_dssp HHHHHHHHSSCS-BCCHHHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSCS--
T ss_pred HHHHHHHHcCCC-CCCHHHHHH-HHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccCc--
Confidence 578999998753 478999998 568999999999999999999988764 56777888899999999987542110
Q ss_pred hhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhc----------
Q 005652 438 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------- 507 (685)
Q Consensus 438 ~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~---------- 507 (685)
...+..++|++||.||+|++++|.. ..+++.|+|||.+|+.+||++||||||++|++|||+++.
T Consensus 82 ----~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~ 155 (396)
T 1fkm_A 82 ----RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID 155 (396)
T ss_dssp ----THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred ----ccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence 1223457999999999999999986 357899999999999999999999999999999999862
Q ss_pred --------c----------hhhHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHH
Q 005652 508 --------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFR 569 (685)
Q Consensus 508 --------d----------E~~AFw~f~~Lm~~~~~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r 569 (685)
+ |++|||||++||+++..+|..+++|++..+..++.||+..+|+||+||++.|+.+.+|+++
T Consensus 156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r 235 (396)
T 1fkm_A 156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFR 235 (396)
T ss_dssp GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHH
T ss_pred cccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 2 8999999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhhc---------------------------------------------------c--
Q 005652 570 WVLIQFKREFEYEKTMRLWEVLWTHY---------------------------------------------------L-- 596 (685)
Q Consensus 570 Wfl~lF~refp~~~vlrLWD~~l~~~---------------------------------------------------~-- 596 (685)
||+++|+++||+++++||||++|+++ .
T Consensus 236 W~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 315 (396)
T 1fkm_A 236 WMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVED 315 (396)
T ss_dssp HHHTTTGGGSCHHHHHHHHHHHHHHHC-----------------------------------------------------
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987 1
Q ss_pred -------c-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHhccCCC
Q 005652 597 -------S-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENGA 658 (685)
Q Consensus 597 -------~-~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~----id~~~lL~~A~~L~~~~~e~~~ 658 (685)
+ ..|++|+|+|||..+|+.||+ +||++++++|+++|.. .|++.+|.+|..++........
T Consensus 316 ~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~ 387 (396)
T 1fkm_A 316 SGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDATS 387 (396)
T ss_dssp -------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC----
T ss_pred chhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccHH
Confidence 1 379999999999999999995 5999999999999864 5899999999999887766543
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=8.7e-51 Score=438.32 Aligned_cols=287 Identities=25% Similarity=0.475 Sum_probs=248.4
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHH
Q 005652 358 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 437 (685)
Q Consensus 358 ~~~W~~~~d~~g~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~ 437 (685)
.++|.++++.. .++.++||+. +++|||+.+|+.||++|||++|.+. ++|.....+++.+|..++++|......+
T Consensus 26 ~~kw~~~l~~~--~~d~~~Lr~l-~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~~~- 99 (345)
T 2qfz_A 26 LDKFKQLLAGP--NTDLEELRRL-SWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRNDE- 99 (345)
T ss_dssp HHHHHHHHHCS--BCCHHHHHHH-HTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHcCC--CCCHHHHHHH-HHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCCcc-
Confidence 57899999864 4789999985 5899999999999999999988764 4567777888999999999886532211
Q ss_pred hhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhc----------
Q 005652 438 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------- 507 (685)
Q Consensus 438 ~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~---------- 507 (685)
...+..++|++||.||+|+ ++|..+ .+++.|+|||.+|+.+||++||||||++|++|||+++.
T Consensus 100 ----~~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~ 172 (345)
T 2qfz_A 100 ----VHQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVD 172 (345)
T ss_dssp -----CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----
T ss_pred ----chHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhccccccc
Confidence 1223457999999999999 999874 46789999999999999999999999999999999874
Q ss_pred --------------chhhHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHH
Q 005652 508 --------------DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLI 573 (685)
Q Consensus 508 --------------dE~~AFw~f~~Lm~~~~~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~ 573 (685)
+|++|||||++||+++..+|..+++|++..+..++.||+..+|+||+||++.|+.+.+|+++||++
T Consensus 173 ~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~ 252 (345)
T 2qfz_A 173 TVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNN 252 (345)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 389999999999999988999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHH
Q 005652 574 QFKREFEYEKTMRLWEVLWTHYLSE-HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEA 648 (685)
Q Consensus 574 lF~refp~~~vlrLWD~~l~~~~~~-~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~----id~~~lL~~A~~ 648 (685)
+|+++||+++++||||++|+++.+. .|++|+|+|||..+++.||++. |+++++++|+++|.. .|++.++..|..
T Consensus 253 lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~-d~~~il~~L~~~p~~~~~~~di~~ll~~A~~ 331 (345)
T 2qfz_A 253 LLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEK-DFQELLLFLQNLPTAHWDDEDISLLLAEAYR 331 (345)
T ss_dssp TTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCC-CHHHHHHHHTSCSCTTCCHHHHHHHHHHHHH
T ss_pred HHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCCcCCchhHHHHHHHHHHH
Confidence 9999999999999999999986543 3899999999999999999764 999999999999865 379999999999
Q ss_pred HHHHhccCCC
Q 005652 649 LCICAGENGA 658 (685)
Q Consensus 649 L~~~~~e~~~ 658 (685)
+......+..
T Consensus 332 l~~~~~~~~~ 341 (345)
T 2qfz_A 332 LKFAFADAPN 341 (345)
T ss_dssp HHHHC-----
T ss_pred HHHHHHhhHh
Confidence 9998766553
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-50 Score=434.40 Aligned_cols=286 Identities=20% Similarity=0.376 Sum_probs=238.8
Q ss_pred HHHHH-HhhhcCCCCCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHH
Q 005652 358 SEEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 436 (685)
Q Consensus 358 ~~~W~-~~~d~~g~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~ 436 (685)
..+|. .++..++...+.+++|+ ++++|||+++|+.||++|+|+. +..+.+.+..+..+.+..|..+...+......+
T Consensus 21 ~~~W~~~il~~w~~~~~~~~lr~-l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d 98 (334)
T 2qq8_A 21 VLTWNNEILPNWETMWCSRKVRD-LWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVENED 98 (334)
T ss_dssp HHHHHHTTGGGCC--CCCHHHHH-HHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhHHhccChHHHHH-HHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCcccc
Confidence 57898 58877788888999998 5699999999999999999985 466777777777666677766654432111111
Q ss_pred H-hhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHHH
Q 005652 437 A-RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 515 (685)
Q Consensus 437 ~-~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~ 515 (685)
. .......+..++|++||.||+|++++|.. .+++++.|+|||.+|+.+||++||||||++|||+||+++ +|++||||
T Consensus 99 ~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~ 176 (334)
T 2qq8_A 99 AGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIA 176 (334)
T ss_dssp --------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHH
Confidence 0 00011234567999999999999999986 356789999999999999999999999999999999998 69999999
Q ss_pred HHHHHHhhC--CCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 005652 516 FVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWT 593 (685)
Q Consensus 516 f~~Lm~~~~--~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~ 593 (685)
|++||+++. .+|..+++++...+..++.||+..+|+||+||++.|+.+.+|+++||+|+|+++||++.++||||++|+
T Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~ 256 (334)
T 2qq8_A 177 FSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCR 256 (334)
T ss_dssp HHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 999999763 367778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005652 594 HYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCI 651 (685)
Q Consensus 594 ~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~id~~~lL~~A~~L~~ 651 (685)
+ |..|++++|+|||..+++.|++. ++++++++++++|..+|++.++..|..+..
T Consensus 257 e--g~~~l~~valaiL~~~~~~Ll~~--d~~~il~~L~~lp~~~d~~~l~~~a~~l~~ 310 (334)
T 2qq8_A 257 D--GEEFLFRTALGILKLFEDILTKM--DFIHMAQFLTRLPEDLPAEELFASIATIQM 310 (334)
T ss_dssp H--CHHHHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHSCCTTCCHHHHHHHHHHCCC
T ss_pred c--CCHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCcCCHHHHHHHHHHccC
Confidence 8 56899999999999999999954 899999999999999999999999998764
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=8.7e-50 Score=428.13 Aligned_cols=271 Identities=20% Similarity=0.401 Sum_probs=236.8
Q ss_pred CHHHHHHhhhcCCC---CCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCC
Q 005652 357 GSEEWTTFLDNEGR---VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 433 (685)
Q Consensus 357 t~~~W~~~~d~~g~---~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~ 433 (685)
+.++|+++++.+|+ ..+.++||+.+ ++|||+++|+.||++|+|++++..+..++ ...++..|.++.+++.
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~l~~~~-~~GIP~~lR~~vW~~Llg~~~~~~~~~~~---~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEKMHSAV-GQGVPRHHRGEIWKFLAEQFHLKHQFPSK---QQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHHHHHHH-HTCCCGGGHHHHHHHHHHHHHHHCCCCSS---SCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHHHHHHH-HcCCCHHHHHHHHHHHhCcchhhhcchhh---hhhchHHHHHHHHhcC---
Confidence 46789999998887 36789999855 79999999999999999986532221111 1234567888876432
Q ss_pred hHHHhhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHH
Q 005652 434 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 513 (685)
Q Consensus 434 ~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AF 513 (685)
...++|++||.||+|++++|..+.+++++.|++||.+|+.+||++||||||++|+++||+++ +|++||
T Consensus 102 -----------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF 169 (331)
T 3qye_A 102 -----------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAF 169 (331)
T ss_dssp -----------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHH
T ss_pred -----------CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHH
Confidence 12358999999999999999998889999999999999999999999999999999999999 699999
Q ss_pred HHHHHHHHhh--CCCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHH
Q 005652 514 WCFVALMERL--GPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVL 591 (685)
Q Consensus 514 w~f~~Lm~~~--~~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~ 591 (685)
|||+++|+++ ..+|..++.+++.++..++.||+.++|+||+||++.|+.+.+|+++||+++|+++||++.++||||++
T Consensus 170 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 170 KMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 9999999874 56888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 005652 592 WTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRI---DLDAILRDAEAL 649 (685)
Q Consensus 592 l~~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~i---d~~~lL~~A~~L 649 (685)
|++ |..|++++|+|||..+++.||++. +++++++++++.+.++ |++.++++|..+
T Consensus 250 l~~--g~~~l~~valaiL~~~~~~ll~~~-~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 250 FLQ--GTEVIFKVALSLLGSHKPLILQHE-NLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHH--CTTHHHHHHHHHHHHTHHHHHTCC-SHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred HHC--CcHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 998 457999999999999999999875 9999999999955556 678888888655
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.2e-48 Score=410.73 Aligned_cols=261 Identities=23% Similarity=0.407 Sum_probs=229.6
Q ss_pred HHHHHHhhhcCCCCC--ChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChH
Q 005652 358 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 435 (685)
Q Consensus 358 ~~~W~~~~d~~g~~~--~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~ 435 (685)
.++|.++++++++.. +.++||+. +++|||+.+|+.||+.|+|+.+. ......|..+..+.
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~l~~l-~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~------ 66 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKGLSTL-VKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKD------ 66 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTTHHHH-HHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHH-HHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhcc------
Confidence 467999998765553 67889985 58999999999999999998652 12245677765431
Q ss_pred HHhhhhhhcccccceeccccccCCCCcccCCCCChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHHHH
Q 005652 436 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 515 (685)
Q Consensus 436 ~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AFw~ 515 (685)
.+..++|++||.||+|++++|..+.+.+++.|+|||.+|+.+||++||||||++|+++||+++ +|++||||
T Consensus 67 --------~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~ 137 (310)
T 3hzj_A 67 --------SAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCV 137 (310)
T ss_dssp --------CTTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred --------CCcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHH
Confidence 122458999999999999999998888999999999999999999999999999999999999 69999999
Q ss_pred HHHHHHh--hCCCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 005652 516 FVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWT 593 (685)
Q Consensus 516 f~~Lm~~--~~~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~ 593 (685)
|+++|++ +..+|..++++++..+..++.+|+..+|+||+||++.|+.+.+|+++||+|+|+++||++.++||||++++
T Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~ 217 (310)
T 3hzj_A 138 LVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLC 217 (310)
T ss_dssp HHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 9999987 56678888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-hCCC----CCCHHHHHHHHHHH
Q 005652 594 HYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFIN-ELSG----RIDLDAILRDAEAL 649 (685)
Q Consensus 594 ~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~-~L~~----~id~~~lL~~A~~L 649 (685)
+ |..+++++|+|||..+++.|+++ ++++++++|+ .+|. ..|++.+++.|..+
T Consensus 218 ~--g~~~l~~v~lail~~~~~~Ll~~--d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 218 E--GLNIIFHVALALLKTSKEDLLQA--DFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp H--CTTHHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred C--CcHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 8 45799999999999999999965 9999999997 5653 35889999999877
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=6.4e-46 Score=391.42 Aligned_cols=265 Identities=18% Similarity=0.267 Sum_probs=225.1
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHhC-C-CCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChH
Q 005652 358 SEEWTTFLDNEGRVMDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 435 (685)
Q Consensus 358 ~~~W~~~~d~~g~~~~~~~Lk~~i~~~-G-Ip~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~ 435 (685)
.++++..+.. ..++.++||+.+..+ | +|+++|+.||+.|+|+.+..... .|.....
T Consensus 20 ~~~i~~~l~~--~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~------------~~~~~~~-------- 77 (292)
T 4hl4_A 20 VAEIHQALNS--DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP------------ISGKNLR-------- 77 (292)
T ss_dssp HHHHHHHHTS--SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS------------CCCTTHH--------
T ss_pred HHHHHHHHcC--CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC------------chhhhhc--------
Confidence 4567776654 457899999976543 3 78999999999999998765321 1211000
Q ss_pred HHhhhhhhcccccceeccccccCCCCcccCCC--CChhhHHHHHHHhhhhhccCCCCcccchhHHHHHHHHHhcchhhHH
Q 005652 436 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGD--DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 513 (685)
Q Consensus 436 ~~~~~~~~~e~~~~I~kDV~RT~~~~~~F~~~--~~~~~~~L~~IL~ays~~npdlGYvQGM~dL~aplL~v~~dE~~AF 513 (685)
...+..++|++||.||+|+++.|..+ .+.+++.|+|||.+|+.+||++|||||||+|+++||+++ +|++||
T Consensus 78 ------~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF 150 (292)
T 4hl4_A 78 ------QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLAT 150 (292)
T ss_dssp ------HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHH
T ss_pred ------ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHH
Confidence 11234569999999999999988642 345678999999999999999999999999999999998 699999
Q ss_pred HHHHHHHHhhCC-CCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCc-HHHHHHHHHHH
Q 005652 514 WCFVALMERLGP-NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE-YEKTMRLWEVL 591 (685)
Q Consensus 514 w~f~~Lm~~~~~-nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp-~~~vlrLWD~~ 591 (685)
|||+++|+...+ .|..++.+++..+..++.+|+..+|+||+||++.++. .+|+++||+|+|++++| ++.++||||++
T Consensus 151 ~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~ 229 (292)
T 4hl4_A 151 SLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFF 229 (292)
T ss_dssp HHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 999999997555 5667788999999999999999999999999999995 68999999999999996 99999999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Q 005652 592 WTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAG 654 (685)
Q Consensus 592 l~~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~id~~~lL~~A~~L~~~~~ 654 (685)
|+++ ..+++|+|+|||..+++.||+++.++++++++++++|..+|++.++.+|..|+.+.+
T Consensus 230 l~~g--~~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~p 290 (292)
T 4hl4_A 230 LACH--PLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFP 290 (292)
T ss_dssp HHSC--TTHHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHSC
T ss_pred HHcC--CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCC
Confidence 9985 579999999999999999999877899999999999999999999999999998654
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=7.4e-40 Score=343.86 Aligned_cols=254 Identities=15% Similarity=0.216 Sum_probs=210.9
Q ss_pred HHHHhhhcCCCCCChHHHHHHHHhCCCCchhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhh
Q 005652 360 EWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARR 439 (685)
Q Consensus 360 ~W~~~~d~~g~~~~~~~Lk~~i~~~GIp~~lR~~VW~~LLgv~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~~~~~ 439 (685)
..+.++. +..+|.++||+.+.+||||+.+|+.||++|+|+.|.+++. |+.+..+++++|++++++...
T Consensus 28 ~~~~ll~--~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~~~-------- 95 (294)
T 3qwl_A 28 SLEILLK--DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHALKV-------- 95 (294)
T ss_dssp HHHHHTT--SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHhc--CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhhhh--------
Confidence 4555554 5789999999987666699999999999999999998665 788889999999999987321
Q ss_pred hhhhcccccceeccccccCCCCcccCCCCChhhHHHHHH-------HhhhhhccCCCCcccchhHHHHHHHHHhcchhhH
Q 005652 440 FTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI-------LLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQS 512 (685)
Q Consensus 440 ~~~~~e~~~~I~kDV~RT~~~~~~F~~~~~~~~~~L~~I-------L~ays~~npdlGYvQGM~dL~aplL~v~~dE~~A 512 (685)
.++|+.+.++. ..-+... ..+|. .+++. ++|||++|++++++++.+|++|
T Consensus 96 -------~r~I~~~tP~~--------------~vfl~~~~~~~~~l~~~~~-~~~~~-~~~~~~~Iaa~ll~l~~~E~dA 152 (294)
T 3qwl_A 96 -------VRFVSDATPQA--------------EVYLRMYQLESGKLPRSPS-FPLEP-DDEVFLAIAKAMEEMVEDSVDC 152 (294)
T ss_dssp -------TTSCCTTSCHH--------------HHHHHHHHHHHTCCCSSTT-SCCCH-HHHHHHHHHHHHHHHCCSHHHH
T ss_pred -------hhhhhccCchH--------------HHHHHHHHccccccccccc-CCccc-chhhHHHHHHHHHHHhCCHHHH
Confidence 24555533221 1111111 11121 12332 5699999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 005652 513 FWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLW 592 (685)
Q Consensus 513 Fw~f~~Lm~~~~~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l 592 (685)
||||++||+++..+|..+++|++..+ +.||+.++|+|++||++.|+.+.+++.+||+++|+++||+++++||||++|
T Consensus 153 FW~f~~Lm~~l~~~f~~~~~gl~~~l---~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~ 229 (294)
T 3qwl_A 153 YWITRRFVNQLNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVV 229 (294)
T ss_dssp HHHHHHHHHHHHTTTTTTGGGHHHHH---HHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCChhHHHHHH---HHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999999999998764 899999999999999999998877777999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Q 005652 593 THYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE 655 (685)
Q Consensus 593 ~~~~~~~fll~valAIL~~~r~~Il~~~~dfdeilk~l~~L~~~id~~~lL~~A~~L~~~~~e 655 (685)
++ +..|++++|+|||+.+++.||+.+ .+++++++|+++| +.|++.++.+|..|+....+
T Consensus 230 ~~--~~~~l~~valAiL~~~r~~Ll~~~-~~~~il~~Lq~lp-~~di~~ll~~A~~l~~~~~~ 288 (294)
T 3qwl_A 230 SG--SCKILVFVAVEILLTFKIKVMALN-SAEKITKFLENIP-QDSSDAIVSKAIDLWHKHCG 288 (294)
T ss_dssp TT--CSTHHHHHHHHHHHHTHHHHHHCC-SHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHHC
T ss_pred hC--CchHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHcCC-cccHHHHHHHHHHHHHHcCC
Confidence 96 668999999999999999999864 5599999999998 78999999999999988755
No 8
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=95.56 E-value=0.023 Score=52.78 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=78.1
Q ss_pred EEEEeeCCeEEccCccc-cCCCCceEEEEeeCCceeEEEEecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCC
Q 005652 44 ELVYLKDNVTIHPTQFA-SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (685)
Q Consensus 44 ~llf~Ks~V~vhpt~~~-~d~i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~Si~~~~p~~G 122 (685)
.+||..++|-++..... ...-.|.|.|+ .--|-|+|... .. ...+++||+.|..+....|.+|
T Consensus 30 ~il~~~d~V~Ly~g~~k~~~~k~G~lyLT----shRIIyv~~~~-----------~~-~~SfslPL~~v~~~e~~~~~fg 93 (145)
T 2cay_A 30 KDIFIDQSVGLYHGKSKILQRQRGRIFLT----SQRIIYIDDAK-----------PT-QNSLGLELDDLAYVNYSSGFLT 93 (145)
T ss_dssp CEEEEEEEEEEEETTEECTTCSSEEEEEE----SSEEEEEESSC-----------HH-HHCEEEEGGGEEEEEEECSSSS
T ss_pred EEEEEcCCcceecCCCCCcCCCccEEEEE----cCeEEEecCCC-----------Cc-ceEEEeEhHheeeeeEEcCccc
Confidence 68888899999987644 45567888887 33578987432 11 1348999999999999999888
Q ss_pred ceE-EEEEeC---CCCcCCceEeecCChHHHHHHHHhcccccccC
Q 005652 123 WQY-IIVVLS---SGLAFPPLYFYTGGVREFLATIKQHVLLVRSV 163 (685)
Q Consensus 123 w~~-~ii~~~---~g~~~P~L~F~~gG~~~fl~~L~~~v~l~rS~ 163 (685)
+.. |++.++ .|...--|-|..||..||...|.+-+.-.+..
T Consensus 94 ~s~Ki~l~~~p~~~~~~~~KLsFk~GGa~eF~~~l~~al~~~~~~ 138 (145)
T 2cay_A 94 RSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATERALENILTE 138 (145)
T ss_dssp SSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHHHHHHHHHHC
T ss_pred cCceEEEEecCCCCCceEEEEEEcCCCchHHHHHHHHHHHHHHHh
Confidence 664 666775 45668889999999999999997766554443
No 9
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=94.28 E-value=0.36 Score=44.40 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=73.1
Q ss_pred EEEEeeCCeEEccCccccCCCCceEEEEeeCCceeEEEEecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCc
Q 005652 44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGW 123 (685)
Q Consensus 44 ~llf~Ks~V~vhpt~~~~d~i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~Si~~~~p~~Gw 123 (685)
.+|+..++|-++........-.|.|.|+ .--|-|+.... . . ..+++||+.|.++...+|.+|-
T Consensus 18 ~il~~~~~V~Ly~g~~k~~~k~G~l~LT----shRli~~d~~~-~-----------~-~s~~lpl~~v~~~e~~~~~f~~ 80 (140)
T 2hth_B 18 TLVIQQRGVRIYDGEEKIKFDAGTLLLS----THRLIWRDQKN-H-----------E-CCMAILLSQIVFIEEQAAGIGK 80 (140)
T ss_dssp CEEEEEEEEEEEETTCSSCCCCEEEEEE----SSEEEEEETTC-C-----------S-CCEEEEGGGEEEEEEECCTTSS
T ss_pred eEEEEcCCEEEecCCCCCCCcCCEEEEe----cCEEEEecCCC-C-----------c-eEEEEEhHHeeeeeeecccccc
Confidence 5788889999998775556678888887 34688876443 1 1 2478999999999999998764
Q ss_pred -eEEEEEeCC-------------CCcCCceEeecCChHHHHHHHHhcc
Q 005652 124 -QYIIVVLSS-------------GLAFPPLYFYTGGVREFLATIKQHV 157 (685)
Q Consensus 124 -~~~ii~~~~-------------g~~~P~L~F~~gG~~~fl~~L~~~v 157 (685)
.-|++.++. |...--|-|+.||..+|...|.+-+
T Consensus 81 s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~al 128 (140)
T 2hth_B 81 SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEM 128 (140)
T ss_dssp CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CceEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHHHH
Confidence 356777764 3345679999999999999996543
No 10
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=89.48 E-value=1.1 Score=39.24 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=48.3
Q ss_pred ceEEEEeeCCceeEEEEecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCCcCCceEeecCC
Q 005652 66 GRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGG 145 (685)
Q Consensus 66 G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~Si~~~~p~~Gw~~~ii~~~~g~~~P~L~F~~gG 145 (685)
|.|.|... .|+|+|+.. +. . ..++++++|...+..||+.--=-+-|++++|.++ .|+|-+++
T Consensus 22 GtL~l~~d----~i~W~p~~~-~~-----------~-~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~-~F~Ftn~~ 83 (108)
T 1pfj_A 22 GALYLMAE----RIAWAPEGK-DR-----------F-TISHMYADIKCQKISPEGKAKIQLQLVLHAGDTT-NFHFSNES 83 (108)
T ss_dssp CEEEEETT----EEEEECSSS-SS-----------C-SEEEETTTCCCEEECCSSSSSCEEEEECSSSCEE-EEECCCSS
T ss_pred ceEEEEcc----eEEEccCCC-CC-----------c-eEEEehhhhhcceeCCCCCccEEEEEEEeCCCce-EEEEcCcH
Confidence 99999866 899999554 21 1 2456899999999999976655678889988766 88898874
No 11
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=29.79 E-value=78 Score=30.48 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=52.2
Q ss_pred HHhcchhhHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHH
Q 005652 504 FVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEK 583 (685)
Q Consensus 504 ~v~~dE~~AFw~f~~Lm~~~~~nf~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~ 583 (685)
..+..+......-..+++.+...=..+...|+..+..++.-+ .+|..++.+= -|+|.+..--=.|.++++.
T Consensus 50 w~l~a~~~g~ftr~ef~~G~~~l~~dsi~~lk~~l~~l~~~l--~d~~~Fk~~Y-------~ftF~~~re~gqk~L~~e~ 120 (199)
T 3kev_A 50 WKLKASSTCEFSEKEFVEGLANLQVDSLEKLKRKLSSLRKEI--EDPSKFRAFY-------QFVFQYSKEPSQRSLPAET 120 (199)
T ss_dssp HHTTCCSTTCEEHHHHHHHHHHTTCCSHHHHHHHHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTCSSBCHHH
T ss_pred HHcCCCccCcccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHcCcCcCCCCHHH
Confidence 334444444444344444443333345567777776666654 4676665552 4778777666678999999
Q ss_pred HHHHHHHHHhh
Q 005652 584 TMRLWEVLWTH 594 (685)
Q Consensus 584 vlrLWD~~l~~ 594 (685)
++.+|++++..
T Consensus 121 Ai~~W~lll~~ 131 (199)
T 3kev_A 121 AMALWDVLLRG 131 (199)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999999964
No 12
>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}
Probab=27.61 E-value=52 Score=32.31 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=40.5
Q ss_pred CCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHH--hcCCCCcHHHHHHHHHHHHhh
Q 005652 529 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLI--QFKREFEYEKTMRLWEVLWTH 594 (685)
Q Consensus 529 ~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~--lF~refp~~~vlrLWD~~l~~ 594 (685)
.+...|+..+..+..-| .+|..++.+= -|+|.+-+. -=.|.++++.++.+|+++|..
T Consensus 74 dsi~~lk~~l~~L~~~l--~d~~~Fk~~Y-------~ftF~~~~~~e~gqk~L~le~Ai~~W~Lll~~ 132 (221)
T 4gba_A 74 DSIDGICARFPSLLTEA--KQEDKFKDLY-------RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ 132 (221)
T ss_dssp SSHHHHHHHHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTTTCSSEEHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHhcCCccccCCCHHHHHHHHHHHcCC
Confidence 34556666666555544 5676666552 477777765 567889999999999999975
No 13
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*
Probab=26.24 E-value=40 Score=32.55 Aligned_cols=57 Identities=11% Similarity=0.239 Sum_probs=40.4
Q ss_pred CCchhHHHHHHHHHHHHHhhChhHHHHHHhccCCcchhHHHHHHHhcCCCCcHHHHHHHHHHHHhh
Q 005652 529 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTH 594 (685)
Q Consensus 529 ~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~refp~~~vlrLWD~~l~~ 594 (685)
.+...|+..+..++.-| .+|..++.+= -|+|.+..--=.|.++++.++.+|++++..
T Consensus 73 dsi~~lk~~l~~l~~~l--~d~~~Fk~~Y-------~ftF~~~r~~gqk~L~~e~Ai~~W~lll~~ 129 (200)
T 3tdu_A 73 DSIEKLKAQIPKMEQEL--KEPGRFKDFY-------QFTFNFAKNPGQKGLDLEMAIAYWNLVLNG 129 (200)
T ss_dssp SSHHHHHHTHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTCSSEEHHHHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHcCcCcCcCCHHHHHHHHHHHcCC
Confidence 34456666666665554 3666555552 478887776667899999999999999975
No 14
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=25.43 E-value=2.3e+02 Score=24.74 Aligned_cols=56 Identities=14% Similarity=0.282 Sum_probs=41.2
Q ss_pred CCCCceEEEEeeCCceeEEEEecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeC
Q 005652 62 ERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLS 131 (685)
Q Consensus 62 d~i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~Si~~~~p~~Gw~~~ii~~~ 131 (685)
.-..|.|.|.+...-..|.|+|-.+ + - ..+|+|+.|..++--|.+..-=-+-|+-+
T Consensus 10 KKk~G~lti~eD~~p~~l~W~p~~g-~------------~-~isI~l~~It~LQqTp~ts~KvmLKI~~k 65 (115)
T 1y5o_A 10 EKVSGIIAINEDVSPAELTWRSTDG-D------------K-VHTVVLSTIDKLQATPASSEKMMLRLIGK 65 (115)
T ss_dssp SSCEEEEEEECSSSSCEEEEEESSS-S------------C-EEEEESTTCSEEEECCTTCSSEEEEEEEC
T ss_pred EecccEEEEccCCCcceEEEEECCC-C------------c-cEEEEhhhhhhhhcCCCCCCceEEEEEEe
Confidence 3467999999888888999999554 2 1 26899999999986666666444555555
No 15
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=20.13 E-value=39 Score=27.35 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHhccCCCC---CCCCCCCCCCC
Q 005652 604 VCVAILKRYRNKIMGEQMDFDTLLKFINEL-SGRIDLDAILRDAEALCICAGENGAA---SIPPGTPPSLP 670 (685)
Q Consensus 604 valAIL~~~r~~Il~~~~dfdeilk~l~~L-~~~id~~~lL~~A~~L~~~~~e~~~~---~~pp~~~~~~p 670 (685)
=|++.|...|...-....-+.+.++.++++ .+.+|...++.+...||.-.++.-.. .+|++-...+|
T Consensus 6 dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~hpdLi~gFn~FLP~~~~i~~~ 76 (77)
T 2czy_A 6 DALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIP 76 (77)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCHHHHHHHHTTSCSSSCCCCC
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHCCCCceecCC
Confidence 366777777777653211244555555554 35799999999999998755444322 67777666654
Done!