Query 005653
Match_columns 685
No_of_seqs 363 out of 1634
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 11:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2164 Predicted E3 ubiquitin 100.0 3.9E-61 8.4E-66 518.7 14.7 403 23-577 106-512 (513)
2 KOG0823 Predicted E3 ubiquitin 99.3 3.6E-12 7.7E-17 127.6 4.6 65 108-178 45-109 (230)
3 PLN03208 E3 ubiquitin-protein 99.2 1E-11 2.2E-16 122.4 6.5 70 107-176 15-91 (193)
4 KOG0317 Predicted E3 ubiquitin 99.1 6E-11 1.3E-15 122.0 3.7 53 108-169 237-289 (293)
5 PF15227 zf-C3HC4_4: zinc fing 99.0 3.5E-10 7.7E-15 85.5 3.6 42 113-159 1-42 (42)
6 KOG0320 Predicted E3 ubiquitin 99.0 2.1E-10 4.6E-15 110.4 2.8 56 109-173 130-187 (187)
7 smart00504 Ubox Modified RING 98.8 3.1E-09 6.8E-14 86.7 4.8 53 110-171 1-53 (63)
8 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.1E-09 6.8E-14 78.9 3.1 38 113-159 1-39 (39)
9 COG5574 PEX10 RING-finger-cont 98.8 2.7E-09 5.9E-14 108.8 2.6 53 108-168 213-266 (271)
10 PF00097 zf-C3HC4: Zinc finger 98.6 2.5E-08 5.5E-13 74.6 3.5 40 113-159 1-41 (41)
11 KOG0978 E3 ubiquitin ligase in 98.6 1.1E-08 2.4E-13 117.6 1.1 57 109-173 642-698 (698)
12 TIGR00599 rad18 DNA repair pro 98.6 2.7E-08 5.8E-13 109.0 3.8 55 107-170 23-77 (397)
13 PF13639 zf-RING_2: Ring finge 98.6 2.2E-08 4.8E-13 76.2 2.2 40 112-160 2-44 (44)
14 PHA02929 N1R/p28-like protein; 98.6 3.6E-08 7.7E-13 101.3 4.3 47 109-164 173-227 (238)
15 PF13920 zf-C3HC4_3: Zinc fing 98.6 3.5E-08 7.5E-13 77.3 3.2 46 110-164 2-48 (50)
16 PF04564 U-box: U-box domain; 98.6 4E-08 8.7E-13 83.2 3.6 56 108-171 2-57 (73)
17 KOG0287 Postreplication repair 98.6 1.4E-08 3.1E-13 106.0 0.9 70 94-172 6-76 (442)
18 PHA02926 zinc finger-like prot 98.6 3.4E-08 7.4E-13 98.7 3.0 55 107-164 167-230 (242)
19 PF13445 zf-RING_UBOX: RING-ty 98.5 1.1E-07 2.4E-12 72.2 2.9 39 113-157 1-43 (43)
20 cd00162 RING RING-finger (Real 98.4 2E-07 4.4E-12 69.6 3.7 43 112-162 1-44 (45)
21 smart00184 RING Ring finger. E 98.4 4.1E-07 8.8E-12 65.6 3.8 39 113-159 1-39 (39)
22 TIGR00570 cdk7 CDK-activating 98.3 4.3E-07 9.2E-12 96.0 4.1 59 109-175 2-65 (309)
23 PF14634 zf-RING_5: zinc-RING 98.3 4.5E-07 9.7E-12 69.2 3.2 41 112-161 1-44 (44)
24 COG5432 RAD18 RING-finger-cont 98.3 2.5E-07 5.3E-12 95.1 2.0 55 107-170 22-76 (391)
25 PF12678 zf-rbx1: RING-H2 zinc 98.2 1.1E-06 2.3E-11 74.6 2.9 40 112-160 21-73 (73)
26 KOG0311 Predicted E3 ubiquitin 98.1 3E-07 6.5E-12 97.2 -2.2 48 108-163 41-89 (381)
27 PF14835 zf-RING_6: zf-RING of 98.0 1.2E-06 2.6E-11 71.4 -0.2 49 110-169 7-56 (65)
28 KOG2177 Predicted E3 ubiquitin 98.0 2.3E-06 4.9E-11 88.7 1.6 46 107-161 10-55 (386)
29 KOG2879 Predicted E3 ubiquitin 97.9 6.7E-06 1.5E-10 84.5 3.5 50 108-164 237-287 (298)
30 COG5243 HRD1 HRD ubiquitin lig 97.9 5.5E-06 1.2E-10 88.0 3.0 62 90-163 270-344 (491)
31 PF12861 zf-Apc11: Anaphase-pr 97.8 1.6E-05 3.4E-10 68.9 3.0 35 125-165 49-83 (85)
32 KOG4172 Predicted E3 ubiquitin 97.7 8.3E-06 1.8E-10 64.0 0.2 46 111-164 8-54 (62)
33 COG5540 RING-finger-containing 97.7 3.8E-05 8.1E-10 80.0 4.1 49 108-164 321-372 (374)
34 KOG0802 E3 ubiquitin ligase [P 97.6 2.1E-05 4.6E-10 90.8 2.3 50 109-167 290-344 (543)
35 KOG0824 Predicted E3 ubiquitin 97.5 3.9E-05 8.4E-10 80.1 1.9 51 110-168 7-57 (324)
36 PF11789 zf-Nse: Zinc-finger o 97.5 4.9E-05 1.1E-09 61.4 2.1 44 108-158 9-53 (57)
37 KOG4628 Predicted E3 ubiquitin 97.4 7.1E-05 1.5E-09 80.6 2.2 45 111-163 230-277 (348)
38 KOG2660 Locus-specific chromos 97.3 5.7E-05 1.2E-09 79.9 0.6 48 109-165 14-62 (331)
39 KOG4159 Predicted E3 ubiquitin 97.3 0.00013 2.8E-09 80.5 2.3 49 108-165 82-130 (398)
40 COG5222 Uncharacterized conser 97.2 0.00017 3.7E-09 74.9 1.7 89 62-161 213-318 (427)
41 COG5152 Uncharacterized conser 97.1 0.00015 3.3E-09 71.3 1.1 45 110-163 196-240 (259)
42 KOG1785 Tyrosine kinase negati 97.1 0.00032 6.9E-09 75.4 3.0 57 110-175 369-425 (563)
43 KOG1813 Predicted E3 ubiquitin 97.0 0.00024 5.2E-09 74.1 0.9 46 110-164 241-286 (313)
44 KOG1002 Nucleotide excision re 96.8 0.00053 1.2E-08 76.0 1.9 55 108-166 534-588 (791)
45 KOG0828 Predicted E3 ubiquitin 96.8 0.00064 1.4E-08 75.0 2.1 48 109-164 570-634 (636)
46 KOG4265 Predicted E3 ubiquitin 96.6 0.0014 3E-08 70.4 3.2 48 108-164 288-336 (349)
47 KOG4692 Predicted E3 ubiquitin 96.6 0.0012 2.6E-08 70.2 2.5 49 108-165 420-468 (489)
48 KOG0827 Predicted E3 ubiquitin 96.4 0.0013 2.9E-08 70.8 1.9 51 110-166 4-58 (465)
49 KOG1001 Helicase-like transcri 96.4 0.00091 2E-08 78.8 0.2 52 111-170 455-506 (674)
50 KOG0826 Predicted E3 ubiquitin 96.4 0.0012 2.5E-08 69.9 0.8 54 106-168 296-350 (357)
51 KOG0804 Cytoplasmic Zn-finger 96.3 0.0013 2.8E-08 72.2 1.1 45 109-164 174-222 (493)
52 KOG3039 Uncharacterized conser 96.3 0.0033 7.1E-08 64.1 3.7 55 109-172 220-278 (303)
53 KOG0297 TNF receptor-associate 96.3 0.0018 3.8E-08 72.0 1.8 55 107-170 18-73 (391)
54 KOG1645 RING-finger-containing 96.3 0.001 2.2E-08 72.2 -0.2 56 110-172 4-64 (463)
55 KOG1571 Predicted E3 ubiquitin 96.1 0.0032 6.8E-08 67.8 2.4 44 109-164 304-347 (355)
56 PF04641 Rtf2: Rtf2 RING-finge 96.1 0.006 1.3E-07 64.2 4.4 53 108-170 111-167 (260)
57 KOG1039 Predicted E3 ubiquitin 95.9 0.0043 9.4E-08 67.4 2.6 54 108-163 159-220 (344)
58 KOG0825 PHD Zn-finger protein 95.9 0.0074 1.6E-07 70.0 4.4 50 109-167 122-174 (1134)
59 KOG4275 Predicted E3 ubiquitin 95.8 0.0026 5.6E-08 66.3 0.4 42 110-164 300-342 (350)
60 PF11793 FANCL_C: FANCL C-term 95.7 0.0029 6.3E-08 53.3 -0.1 55 110-164 2-66 (70)
61 COG5219 Uncharacterized conser 95.6 0.0038 8.1E-08 73.5 0.6 49 109-164 1468-1523(1525)
62 smart00744 RINGv The RING-vari 95.0 0.027 5.8E-07 44.1 3.5 42 112-160 1-49 (49)
63 KOG2817 Predicted E3 ubiquitin 94.8 0.017 3.8E-07 62.9 2.6 58 108-171 332-392 (394)
64 PF07800 DUF1644: Protein of u 94.3 0.052 1.1E-06 52.4 4.2 36 109-144 1-49 (162)
65 KOG4739 Uncharacterized protei 94.3 0.013 2.8E-07 60.1 0.1 42 111-163 4-47 (233)
66 KOG1734 Predicted RING-contain 94.1 0.015 3.3E-07 60.2 0.1 53 109-168 223-285 (328)
67 KOG3800 Predicted E3 ubiquitin 93.8 0.042 9.1E-07 57.7 2.9 51 112-170 2-57 (300)
68 KOG1493 Anaphase-promoting com 93.6 0.032 7E-07 47.2 1.3 32 127-164 50-81 (84)
69 KOG4362 Transcriptional regula 93.4 0.014 3.1E-07 67.9 -1.5 64 100-169 11-74 (684)
70 COG5109 Uncharacterized conser 93.3 0.05 1.1E-06 57.5 2.3 73 91-169 309-392 (396)
71 COG5194 APC11 Component of SCF 93.1 0.083 1.8E-06 45.2 3.0 29 126-163 52-80 (88)
72 KOG4185 Predicted E3 ubiquitin 92.6 0.058 1.2E-06 57.6 1.8 46 110-163 3-54 (296)
73 KOG1814 Predicted E3 ubiquitin 92.5 0.061 1.3E-06 58.9 1.8 50 109-159 183-235 (445)
74 KOG2932 E3 ubiquitin ligase in 92.4 0.047 1E-06 57.6 0.6 59 94-163 71-133 (389)
75 PF14447 Prok-RING_4: Prokaryo 92.1 0.075 1.6E-06 42.4 1.4 46 110-166 7-52 (55)
76 KOG3039 Uncharacterized conser 91.9 0.096 2.1E-06 53.8 2.2 35 110-144 43-77 (303)
77 COG5236 Uncharacterized conser 91.2 0.14 2.9E-06 54.9 2.6 47 108-161 59-105 (493)
78 PF05290 Baculo_IE-1: Baculovi 91.1 0.22 4.7E-06 46.8 3.5 51 109-165 79-133 (140)
79 PF14570 zf-RING_4: RING/Ubox 91.0 0.14 3.1E-06 39.9 1.8 43 113-163 1-47 (48)
80 KOG4367 Predicted Zn-finger pr 90.6 0.13 2.8E-06 56.5 1.7 37 108-144 2-38 (699)
81 KOG3161 Predicted E3 ubiquitin 90.5 0.097 2.1E-06 60.0 0.7 32 111-142 12-47 (861)
82 COG5220 TFB3 Cdk activating ki 90.3 0.087 1.9E-06 53.8 0.2 57 110-174 10-74 (314)
83 PF10377 ATG11: Autophagy-rela 89.7 0.63 1.4E-05 43.9 5.4 65 431-506 62-127 (129)
84 KOG4445 Uncharacterized conser 89.6 0.056 1.2E-06 56.8 -1.9 56 109-164 114-186 (368)
85 KOG3002 Zn finger protein [Gen 89.3 0.25 5.5E-06 53.0 2.7 44 109-164 47-91 (299)
86 KOG1941 Acetylcholine receptor 88.8 0.16 3.5E-06 55.2 0.8 47 109-162 364-414 (518)
87 PHA03096 p28-like protein; Pro 88.4 0.25 5.4E-06 52.7 1.9 35 111-145 179-221 (284)
88 KOG1952 Transcription factor N 88.4 0.74 1.6E-05 54.8 5.8 55 106-162 187-245 (950)
89 COG5175 MOT2 Transcriptional r 88.2 0.44 9.6E-06 51.0 3.5 57 109-173 13-73 (480)
90 KOG2930 SCF ubiquitin ligase, 87.1 0.4 8.6E-06 43.1 2.0 26 127-161 80-105 (114)
91 KOG1815 Predicted E3 ubiquitin 86.2 0.68 1.5E-05 52.5 3.9 63 108-171 68-133 (444)
92 KOG0298 DEAD box-containing he 86.1 0.2 4.4E-06 61.8 -0.4 44 109-161 1152-1196(1394)
93 PF10367 Vps39_2: Vacuolar sor 84.5 0.41 8.8E-06 42.8 0.9 31 108-138 76-108 (109)
94 KOG3970 Predicted E3 ubiquitin 84.5 1.1 2.3E-05 45.7 3.9 54 109-163 49-104 (299)
95 KOG1428 Inhibitor of type V ad 84.5 0.4 8.7E-06 59.3 1.0 60 109-168 3485-3548(3738)
96 KOG3579 Predicted E3 ubiquitin 83.2 0.6 1.3E-05 49.0 1.6 55 109-163 267-327 (352)
97 KOG1812 Predicted E3 ubiquitin 82.5 0.66 1.4E-05 51.7 1.7 57 109-168 145-207 (384)
98 KOG0825 PHD Zn-finger protein 82.1 0.83 1.8E-05 53.8 2.3 35 126-163 119-153 (1134)
99 PF02891 zf-MIZ: MIZ/SP-RING z 81.4 1.8 3.9E-05 34.0 3.3 47 110-161 2-49 (50)
100 KOG2034 Vacuolar sorting prote 78.9 1 2.2E-05 54.0 1.7 36 109-144 816-853 (911)
101 PF03854 zf-P11: P-11 zinc fin 78.7 0.84 1.8E-05 35.4 0.6 33 124-165 14-47 (50)
102 PF10272 Tmpp129: Putative tra 78.4 1.3 2.9E-05 48.6 2.3 41 128-168 311-355 (358)
103 KOG2114 Vacuolar assembly/sort 75.8 1.6 3.4E-05 52.2 2.1 40 110-161 840-880 (933)
104 PF05883 Baculo_RING: Baculovi 74.7 1.3 2.8E-05 42.0 0.8 34 109-142 25-67 (134)
105 KOG1100 Predicted E3 ubiquitin 71.1 2.1 4.6E-05 43.7 1.4 38 113-163 161-199 (207)
106 PF08746 zf-RING-like: RING-li 70.2 4.4 9.6E-05 30.8 2.7 40 113-159 1-43 (43)
107 KOG1940 Zn-finger protein [Gen 68.9 2.6 5.6E-05 44.8 1.6 44 109-161 157-204 (276)
108 KOG3113 Uncharacterized conser 68.6 4.9 0.00011 41.8 3.4 49 109-168 110-162 (293)
109 PHA02825 LAP/PHD finger-like p 66.8 6.6 0.00014 38.3 3.7 48 108-163 6-58 (162)
110 COG5183 SSM4 Protein involved 65.6 6.1 0.00013 47.1 3.8 73 109-196 11-90 (1175)
111 PF07191 zinc-ribbons_6: zinc- 63.8 0.36 7.9E-06 40.6 -4.7 40 110-163 1-40 (70)
112 KOG3899 Uncharacterized conser 61.2 6 0.00013 42.0 2.5 43 128-170 325-371 (381)
113 PHA02862 5L protein; Provision 60.7 8.6 0.00019 36.9 3.2 47 111-165 3-54 (156)
114 KOG3268 Predicted E3 ubiquitin 58.1 6.7 0.00014 38.8 2.1 56 109-164 164-228 (234)
115 PF12906 RINGv: RING-variant d 56.6 6.2 0.00014 30.5 1.3 40 113-159 1-47 (47)
116 KOG1729 FYVE finger containing 54.6 3.1 6.6E-05 44.6 -0.9 57 107-165 165-226 (288)
117 PF10571 UPF0547: Uncharacteri 54.0 6.4 0.00014 26.8 0.9 21 112-132 2-24 (26)
118 KOG2068 MOT2 transcription fac 53.6 16 0.00034 39.7 4.1 45 110-163 249-297 (327)
119 TIGR01562 FdhE formate dehydro 53.3 3.1 6.6E-05 45.0 -1.2 43 110-161 184-232 (305)
120 PF10497 zf-4CXXC_R1: Zinc-fin 51.9 11 0.00023 34.5 2.2 57 107-163 4-71 (105)
121 KOG2979 Protein involved in DN 48.9 8.9 0.00019 40.1 1.4 44 108-158 174-218 (262)
122 KOG3842 Adaptor protein Pellin 46.7 29 0.00063 37.3 4.7 57 108-165 339-415 (429)
123 KOG2231 Predicted E3 ubiquitin 45.2 16 0.00034 43.4 2.8 50 112-164 2-52 (669)
124 KOG1356 Putative transcription 42.7 8.4 0.00018 46.3 0.1 32 110-141 229-262 (889)
125 KOG1812 Predicted E3 ubiquitin 42.1 12 0.00026 41.8 1.2 34 110-143 306-344 (384)
126 smart00064 FYVE Protein presen 41.3 20 0.00044 29.3 2.2 34 110-143 10-47 (68)
127 KOG3799 Rab3 effector RIM1 and 41.1 19 0.0004 34.2 2.1 35 105-143 60-94 (169)
128 PRK03564 formate dehydrogenase 40.5 7.6 0.00017 42.0 -0.6 44 109-161 186-234 (309)
129 PF04216 FdhE: Protein involve 39.1 3.8 8.3E-05 43.8 -3.2 44 110-162 172-220 (290)
130 KOG2169 Zn-finger transcriptio 38.9 18 0.00039 43.1 2.1 55 110-169 306-361 (636)
131 PF04710 Pellino: Pellino; In 38.1 11 0.00023 41.9 0.0 48 109-162 276-337 (416)
132 cd00065 FYVE FYVE domain; Zinc 37.2 21 0.00045 28.1 1.6 32 111-142 3-38 (57)
133 KOG3842 Adaptor protein Pellin 35.8 19 0.00041 38.8 1.4 46 110-161 290-349 (429)
134 KOG1842 FYVE finger-containing 35.4 14 0.00031 41.4 0.4 32 107-138 177-212 (505)
135 KOG4718 Non-SMC (structural ma 34.8 20 0.00042 36.6 1.3 45 110-163 181-226 (235)
136 KOG0309 Conserved WD40 repeat- 33.7 30 0.00065 41.3 2.6 21 125-145 1045-1065(1081)
137 COG5627 MMS21 DNA repair prote 32.9 24 0.00051 36.6 1.5 43 109-158 188-231 (275)
138 KOG0289 mRNA splicing factor [ 31.5 42 0.0009 37.8 3.2 54 112-174 2-56 (506)
139 PF01363 FYVE: FYVE zinc finge 31.0 10 0.00022 31.3 -1.3 32 109-140 8-43 (69)
140 KOG1815 Predicted E3 ubiquitin 30.2 24 0.00053 40.1 1.2 32 111-142 164-198 (444)
141 COG0068 HypF Hydrogenase matur 30.0 26 0.00055 41.8 1.3 26 107-132 98-133 (750)
142 KOG2789 Putative Zn-finger pro 29.6 23 0.00051 39.2 0.9 34 110-143 74-109 (482)
143 KOG1829 Uncharacterized conser 29.2 21 0.00045 41.9 0.4 41 109-161 510-558 (580)
144 KOG1150 Predicted molecular ch 29.1 90 0.002 31.8 4.8 28 519-546 166-193 (250)
145 KOG1818 Membrane trafficking a 29.1 15 0.00032 43.4 -0.8 65 88-163 153-221 (634)
146 PF04710 Pellino: Pellino; In 29.0 18 0.0004 40.1 0.0 56 110-165 328-402 (416)
147 KOG3451 Uncharacterized conser 28.9 83 0.0018 26.4 3.7 37 494-530 27-64 (71)
148 PF05605 zf-Di19: Drought indu 28.5 26 0.00056 27.7 0.8 40 110-163 2-41 (54)
149 COG3813 Uncharacterized protei 27.8 39 0.00084 28.7 1.7 37 123-170 22-58 (84)
150 COG3058 FdhE Uncharacterized p 27.7 39 0.00084 36.0 2.1 43 110-161 185-233 (308)
151 COG4647 AcxC Acetone carboxyla 26.8 31 0.00067 32.5 1.1 38 94-135 45-82 (165)
152 PF06906 DUF1272: Protein of u 26.7 57 0.0012 26.5 2.4 45 111-166 6-54 (57)
153 KOG1819 FYVE finger-containing 26.6 17 0.00038 41.1 -0.7 29 109-137 900-932 (990)
154 KOG4185 Predicted E3 ubiquitin 25.8 13 0.00028 39.6 -1.8 44 111-162 208-265 (296)
155 PF12660 zf-TFIIIC: Putative z 25.6 5.9 0.00013 35.7 -3.8 47 111-163 15-65 (99)
156 PRK04023 DNA polymerase II lar 25.4 47 0.001 41.2 2.4 55 109-174 625-684 (1121)
157 KOG1029 Endocytic adaptor prot 25.3 99 0.0022 37.4 4.9 16 514-529 320-335 (1118)
158 PF15616 TerY-C: TerY-C metal 24.9 40 0.00087 32.0 1.5 40 109-163 76-115 (131)
159 KOG0801 Predicted E3 ubiquitin 24.5 24 0.00052 34.5 -0.1 26 108-133 175-203 (205)
160 KOG0827 Predicted E3 ubiquitin 24.2 7.9 0.00017 42.7 -3.8 49 110-167 196-248 (465)
161 KOG2893 Zn finger protein [Gen 22.4 34 0.00074 35.4 0.5 12 152-163 33-44 (341)
162 KOG0883 Cyclophilin type, U bo 22.2 1.3E+02 0.0028 33.6 4.8 73 111-192 41-113 (518)
163 KOG1814 Predicted E3 ubiquitin 21.8 33 0.00072 38.3 0.3 31 109-139 367-403 (445)
164 PTZ00303 phosphatidylinositol 21.5 43 0.00093 40.2 1.1 32 111-142 461-501 (1374)
165 PF07975 C1_4: TFIIH C1-like d 21.0 51 0.0011 26.2 1.1 26 126-160 25-50 (51)
166 KOG0314 Predicted E3 ubiquitin 21.0 24 0.00053 40.0 -0.9 48 105-162 214-264 (448)
167 TIGR00622 ssl1 transcription f 20.8 79 0.0017 29.3 2.5 41 111-160 56-110 (112)
168 PF09803 DUF2346: Uncharacteri 20.5 1.5E+02 0.0033 25.7 4.0 22 512-533 50-71 (80)
No 1
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-61 Score=518.73 Aligned_cols=403 Identities=33% Similarity=0.519 Sum_probs=254.9
Q ss_pred CCCCcccCccccccCcccCCCCCCCCCCCCCCcccCCCCCCCCccccccccceeeecCCCCCCCCCCCcCcCCCchhhhh
Q 005653 23 SGRRAQTISGNHLLNFQYDPISRPQYRMPPPPARRQRKIRPYNKDLFLQANYKFVVLDTGDHAPESMDPDKMLQWEDIIC 102 (685)
Q Consensus 23 ~gRk~q~~s~nHLlnf~~~~~~~~~~~~~~~~~rr~~~~~~~~k~~fl~aN~~FvV~~~~~y~~~~~dpd~~l~w~~i~q 102 (685)
.|+++|+ |+||||||+|.|++ +..+..+ ++++.+.+..+.. +|++|||+|||+ .++|..+..|||.+++|++|.+
T Consensus 106 ~~~a~~v-s~nhllnf~~~~~~-~~~q~~~-p~~~~~~~~~~~q-~f~~any~fvv~-~gd~~~qn~dpD~p~~~e~i~q 180 (513)
T KOG2164|consen 106 VNLANQV-SLNHLLNFQYAPIE-NSHQSSS-PPRRNRRRDEREQ-TFLNANYRFVVD-EGDYVLQNTDPDAPVDWEDIFQ 180 (513)
T ss_pred hhhhhhh-hhhhhhheeecccc-hhhccCC-Cccccccccccch-hhhccchheeec-ccchhhhccCCccccchHHhhh
Confidence 3688998 99999999999987 4433222 2233333223222 999999999999 9999999999999999999999
Q ss_pred hccCCCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEeeccccccCC
Q 005653 103 VRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQHAVG 182 (685)
Q Consensus 103 v~~~~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~~~~~~~g 182 (685)
|...+ ...|||||+++..|.+|.|||+||++||++||..+. ...++.||+|+..|..++|++|++.+.+...+
T Consensus 181 v~~~t--~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~----~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~- 253 (513)
T KOG2164|consen 181 VYGST--DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSA----IKGPCSCPICRSTITLKDLLPVFIEDDQKKEE- 253 (513)
T ss_pred hhcCc--CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhc----ccCCccCCchhhhccccceeeeeeccccccHH-
Confidence 98766 899999999999999999999999999999999862 34689999999999999999999987643211
Q ss_pred CceEEEEeecCCCCcccCccCcCCCCCCCCCCcccCCCcccccccchHHHHHHHhhhHHHHHHhcCCccccccc----hH
Q 005653 183 DTIEFMLLIREKDSFVPSRKNKQESTTGSIDETYDPFSKFTFTSDVDLSVRKAMSDLDGWLAKADSGLVDDLEK----LP 258 (685)
Q Consensus 183 ~~v~l~L~~R~~~S~~p~~~~~~~~~~~~~~~~~~~FSkf~las~~~~~~~~~~~~l~~~~~~~~~~~~~d~e~----~~ 258 (685)
++++.+++| +......- ..++ -.....|+. +...+++.++.. .| ..+...-+.. ..
T Consensus 254 ----l~~~~~~ng-~~~~~r~F-----~~d~--~r~~p~fl~--dl~~~a~~~i~~--~~----~~~~l~i~~~~~i~~v 313 (513)
T KOG2164|consen 254 ----LKLHQDPNG-IPDYNRRF-----SGDP--ARFVPDFLM--DLPTYARINIRN--MF----NNHILTIVDQVCIAAV 313 (513)
T ss_pred ----HHHHhcccC-CCccccce-----ecCc--ccccHHHHH--hHHHHHHHHHHH--hh----cccceeehhhHhHHHH
Confidence 666666666 11111110 0000 000111221 111122222211 00 0000000000 01
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcccCCCCCCCCcccccccccccCCCCccCCCCcchhhhhhhhhhhccCCCCCCCC
Q 005653 259 YVCAAMEQLEQRKKYWNERRASGSDKASNNADGQTGFHGLQSTKIASNPSHLLNTLSPDISEQNQKLTKLTLNKPDSGSA 338 (685)
Q Consensus 259 ~i~~a~~~l~~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (685)
+|.+++..+..++. . +. +.++. ....++.+..+..
T Consensus 314 ~i~~~~~~~~~~~~--------~----------------~q----~~~~~--is~lde~~~~~l~--------------- 348 (513)
T KOG2164|consen 314 FICQYLSFLLPRRM--------V----------------PQ----AIKGR--ISFLDECTNDQLI--------------- 348 (513)
T ss_pred HHHHHhcccchhhh--------c----------------ch----hhcCc--cCchhhhcchhhh---------------
Confidence 11111111111100 0 00 00000 0000000000000
Q ss_pred CCCCCccCCCCcccccccCCcchhhhhhhcccccccCCcchhhhhhhcccccccCcccccccccccccccCccccchhcc
Q 005653 339 SGQNSALGELSDCDETSLSSSYDESKSMQANETSLSSSYDESKSLQANETSLSSSYDESKSMQANETSLSSSYDESKSLQ 418 (685)
Q Consensus 339 s~~~~~~~~~sd~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~ 418 (685)
+++.+..+. +. ..+...+. .
T Consensus 349 ------ls~~s~~dn-------------------------e~------n~s~~~~~----------~------------- 368 (513)
T KOG2164|consen 349 ------LSEMSRIDN-------------------------EY------NASRGLGR----------D------------- 368 (513)
T ss_pred ------hhhhhhhhh-------------------------hh------hhhhcccc----------c-------------
Confidence 000000000 00 00000000 0
Q ss_pred ccCCCCccCCCCCceEEEecCCCCceeechhcHHHHHHhhCCCCCCCccceeeEEEEEeeeccHHHHHHhccccccCCCc
Q 005653 419 ANFTGSTEIKDKDSYNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQSEAMRRRYRYLSHFSLTT 498 (685)
Q Consensus 419 ~~~~~~~~~~~~~~yyFYQa~dGq~~yLhPLdiriL~~~fGsy~~~P~~I~~rV~eie~~tvde~lRkR~KYLsHLPlgc 498 (685)
.........+|||||..|||||||||||||||+++| +|+.| +.|.++|++|++ |+|++|+|||||+|||+|
T Consensus 369 ----~dl~~~~~~~y~fyq~~~~~~i~L~pldvk~L~~~~-~yd~f-~~i~~~i~~m~~--~~e~~rrr~~~i~hlp~~- 439 (513)
T KOG2164|consen 369 ----DDLLSVSGDAYYFYQSVDGQHIYLHPLDVKILLACY-SYDLF-DEIEAQIENMEQ--VDEELRRRFKYIGHLPLG- 439 (513)
T ss_pred ----ccccCccccceeeecccccceeeecccchhHhhhhh-hhhhH-HHHHHHHHHHHH--HhHHHHhhhhheeeccCc-
Confidence 000012237899999999999999999999999999 99999 999999999999 999999999999999999
Q ss_pred eEEEEEecCCCCCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcCCccccc
Q 005653 499 TFQLCEIDLTEALPPDALSPFIDEIRKREKQRKQLANKERKEKMKAEAALVHSVPPVPSFGQSSYNDSPTFSMDDFEAL 577 (685)
Q Consensus 499 e~~f~E~Dl~~vVs~e~L~~F~~eL~kRrkrr~~K~~~E~k~r~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~l 577 (685)
+++||||..+|++++|..|+.||++|+|+|++|++ ++-|.++|++.++. .+.+++.+.-..+.+|..++|+++
T Consensus 440 --t~~~~d~~ki~p~~i~~~f~~ei~~r~k~r~~r~~--~~~~~~~~~~~~~~--l~~~~~~~~~~~d~~~~~~~~ea~ 512 (513)
T KOG2164|consen 440 --TVLECDWQKILPKEILKLFKHEIKKRRKQRKRRDR--KRYRERAERQMGVL--LASEANLDLSSSDEPFCGDEAEAP 512 (513)
T ss_pred --eeEEeeccccCCHHHHHHhHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHH--HHHhccCCCCCCCCccccchhhcc
Confidence 89999999999999999999999999999999998 45556666666542 123344322223346666666654
No 2
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.6e-12 Score=127.61 Aligned_cols=65 Identities=31% Similarity=0.710 Sum_probs=57.9
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEeecccc
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQ 178 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~~~~ 178 (685)
...+.|.|||+...+|++|.|||.|||+||.+|+.... ....||+|+..+..+.|.+||-.....
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~------~~~~cPVCK~~Vs~~~vvPlYGrG~~~ 109 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRP------NSKECPVCKAEVSIDTVVPLYGRGSKK 109 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcC------CCeeCCccccccccceEEeeeccCCCC
Confidence 45789999999999999999999999999999999765 347899999999999999999876543
No 3
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.23 E-value=1e-11 Score=122.36 Aligned_cols=70 Identities=29% Similarity=0.615 Sum_probs=56.3
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCC-------CCCCCcCCCCCcccccCCCCceeeEeecc
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDED-------YKGDCFKRCPLCFVMISSKELYTIHIENV 176 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~-------~k~~~~~~CPlCr~~i~~~~L~~v~~~~~ 176 (685)
..+.+.||||++.+.+|++|.|||.||+.||..|+...... ........||+|+..+....|.+++....
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~ 91 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQ 91 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCC
Confidence 44678999999999999999999999999999998743210 01123479999999999999999887654
No 4
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6e-11 Score=122.05 Aligned_cols=53 Identities=36% Similarity=0.868 Sum_probs=46.7
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCce
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (685)
+....|.|||+...+|..|+|||+|||.||+.|.... ..||+||..+.+.++.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek---------~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK---------AECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc---------cCCCcccccCCCccee
Confidence 3458999999999999999999999999999999752 4799999999887754
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.98 E-value=3.5e-10 Score=85.49 Aligned_cols=42 Identities=36% Similarity=0.786 Sum_probs=32.2
Q ss_pred ccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 005653 113 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (685)
Q Consensus 113 CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (685)
||||++.+.+|+++.|||+||..||.+|+..... ....||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~-----~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG-----SGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS-----ST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCC-----cCCCCcCC
Confidence 8999999999999999999999999999976431 12689988
No 6
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.1e-10 Score=110.44 Aligned_cols=56 Identities=38% Similarity=0.792 Sum_probs=47.9
Q ss_pred CCccccccCcCCC--CcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEe
Q 005653 109 LSVQCPICLEYPL--CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (685)
Q Consensus 109 ~~~~CPICLe~~~--~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (685)
..+.|||||+.+. .|+-|+|||+||..||...++. ..+||+|+..|..+++.+||+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~---------~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN---------TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh---------CCCCCCcccccchhhheeccC
Confidence 3489999998775 4556999999999999999985 379999999999999888764
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.84 E-value=3.1e-09 Score=86.71 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=47.1
Q ss_pred CccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceee
Q 005653 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (685)
++.||||++.+.+|++++|||+||..||..|+.. ...||+|+..+...+|.+.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~---------~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS---------HGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH---------CCCCCCCcCCCChhhceeC
Confidence 3679999999999999999999999999999975 2689999999988887763
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.80 E-value=3.1e-09 Score=78.91 Aligned_cols=38 Identities=50% Similarity=1.213 Sum_probs=32.9
Q ss_pred ccccCcCCCCc-EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 005653 113 CPICLEYPLCP-QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (685)
Q Consensus 113 CPICLe~~~~P-~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (685)
||||++.+.+| ++++|||.||..||.+|+.. . .+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~--------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-N--------PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-T--------SB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-c--------CCCcCC
Confidence 89999999999 58999999999999999986 2 699988
No 9
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.7e-09 Score=108.75 Aligned_cols=53 Identities=36% Similarity=0.882 Sum_probs=45.1
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHH-HHHcCCCCCCCCCcCCCCCcccccCCCCc
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQ-YLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~-~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (685)
..++.|+||++.+..|.+|.|||+|||.||+. |-.. +.-.||+||+.+.++++
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~--------k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK--------KYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhh--------ccccCchhhhhccchhh
Confidence 45789999999999999999999999999999 6543 23579999998877665
No 10
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.63 E-value=2.5e-08 Score=74.55 Aligned_cols=40 Identities=45% Similarity=1.016 Sum_probs=36.0
Q ss_pred ccccCcCCCCcE-EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 005653 113 CPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (685)
Q Consensus 113 CPICLe~~~~P~-~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (685)
|+||++.+..+. ++.|||.||..||.+|+... ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~-------~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS-------GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT-------SSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhc-------CCccCCcC
Confidence 899999999999 99999999999999999962 24789998
No 11
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.1e-08 Score=117.61 Aligned_cols=57 Identities=26% Similarity=0.638 Sum_probs=51.9
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEe
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (685)
.-+.||+|-.-+.+.+++.|||+||..|+...+... .++||.|...|..+|+.+|++
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR--------qRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR--------QRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh--------cCCCCCCCCCCCcccccccCC
Confidence 357899999999999999999999999999999874 489999999999999998864
No 12
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=2.7e-08 Score=109.05 Aligned_cols=55 Identities=35% Similarity=0.686 Sum_probs=46.6
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
....+.|+||++.+.+|++++|||.||..||..|+.. ...||+|+..+....|..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~---------~~~CP~Cr~~~~~~~Lr~ 77 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN---------QPKCPLCRAEDQESKLRS 77 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC---------CCCCCCCCCccccccCcc
Confidence 4467899999999999999999999999999999864 258999999876655543
No 13
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.59 E-value=2.2e-08 Score=76.24 Aligned_cols=40 Identities=40% Similarity=0.847 Sum_probs=33.2
Q ss_pred cccccCcCCC---CcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcc
Q 005653 112 QCPICLEYPL---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (685)
Q Consensus 112 ~CPICLe~~~---~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (685)
.|+||++.+. ..+.++|||+||..||..|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~---------~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR---------NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH---------SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh---------CCcCCccC
Confidence 6999998763 4557899999999999999986 25999996
No 14
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.58 E-value=3.6e-08 Score=101.29 Aligned_cols=47 Identities=28% Similarity=0.692 Sum_probs=38.7
Q ss_pred CCccccccCcCCCC--------cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLC--------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~--------P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
.+..|+||++.+.. ++++.|||+||..||..|+.. ...||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~---------~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE---------KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc---------CCCCCCCCCEee
Confidence 46799999997654 356789999999999999874 269999998764
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.58 E-value=3.5e-08 Score=77.30 Aligned_cols=46 Identities=39% Similarity=0.895 Sum_probs=39.6
Q ss_pred CccccccCcCCCCcEEccCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 110 SVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
+..|+||++.+..+++++|||. ||..|+.+|+.. ..+||+||.+|.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR---------KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT---------TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc---------CCCCCcCChhhc
Confidence 4689999999999999999999 999999999983 379999999774
No 16
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.57 E-value=4e-08 Score=83.22 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=45.2
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceee
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (685)
++.+.||||.+.+.+|++++|||+|+..||.+|+... ...||+|+..+...+|.+.
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~--------~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQN--------GGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT--------SSB-TTT-SB-SGGGSEE-
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC--------CCCCCCCCCcCCcccceEC
Confidence 5678999999999999999999999999999999862 3799999999998888763
No 17
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.57 E-value=1.4e-08 Score=105.99 Aligned_cols=70 Identities=31% Similarity=0.636 Sum_probs=56.1
Q ss_pred CCCchhh-hhhccCCCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeE
Q 005653 94 MLQWEDI-ICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIH 172 (685)
Q Consensus 94 ~l~w~~i-~qv~~~~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~ 172 (685)
.-+|..- +.+.......+.|-||.++|..|++|+|||.||.-||..|+.. ...||.|+..+...+|+.-.
T Consensus 6 ~Sdw~~tsipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~---------~p~CP~C~~~~~Es~Lr~n~ 76 (442)
T KOG0287|consen 6 ESDWPPTSIPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY---------KPQCPTCCVTVTESDLRNNR 76 (442)
T ss_pred cccCCCccCchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc---------CCCCCceecccchhhhhhhh
Confidence 3455432 3333344567899999999999999999999999999999985 36999999999999988643
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.55 E-value=3.4e-08 Score=98.66 Aligned_cols=55 Identities=29% Similarity=0.643 Sum_probs=41.1
Q ss_pred CCCCccccccCcCCCC---------cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 107 NPLSVQCPICLEYPLC---------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~---------P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
...+..|+||++.... +++.+|+|.||+.||..|.....+. +....||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~---~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRET---GASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcccc---CcCCcCCCCcceee
Confidence 3467899999987532 3467999999999999999863321 12478999999764
No 19
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.45 E-value=1.1e-07 Score=72.16 Aligned_cols=39 Identities=38% Similarity=0.921 Sum_probs=23.9
Q ss_pred ccccCcCCCC----cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCC
Q 005653 113 CPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCP 157 (685)
Q Consensus 113 CPICLe~~~~----P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CP 157 (685)
||||.+ +.. |+++.|||+||..||.+++..+.. ...+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~-----~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDR-----NRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S------S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCC-----CeeeCc
Confidence 999999 777 899999999999999999986431 247887
No 20
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.42 E-value=2e-07 Score=69.62 Aligned_cols=43 Identities=47% Similarity=1.037 Sum_probs=35.8
Q ss_pred cccccCcCCCCcEEc-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 005653 112 QCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (685)
Q Consensus 112 ~CPICLe~~~~P~~t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (685)
.|+||++.+..+..+ .|||.||..|+..|+... ...||+|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~--------~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG--------KNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC--------cCCCCCCCCc
Confidence 499999998777755 599999999999999852 3689999874
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.35 E-value=4.1e-07 Score=65.62 Aligned_cols=39 Identities=49% Similarity=1.163 Sum_probs=34.6
Q ss_pred ccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 005653 113 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (685)
Q Consensus 113 CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (685)
|+||++....+++++|||.||..|+..|+... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~--------~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG--------NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhC--------cCCCCCC
Confidence 89999998899999999999999999999832 3689987
No 22
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.31 E-value=4.3e-07 Score=96.05 Aligned_cols=59 Identities=24% Similarity=0.541 Sum_probs=46.4
Q ss_pred CCccccccCc-CCCCcE---Ec-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEeec
Q 005653 109 LSVQCPICLE-YPLCPQ---IT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIEN 175 (685)
Q Consensus 109 ~~~~CPICLe-~~~~P~---~t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~ 175 (685)
++..||||.. .+.+|. ++ .|||.||..||..++..+ ...||.|+..+..+.+++..+.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~--------~~~CP~C~~~lrk~~fr~q~F~D 65 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--------SGSCPECDTPLRKNNFRVQLFED 65 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC--------CCCCCCCCCccchhhcccccccc
Confidence 3468999996 356665 33 699999999999988643 36899999999999988766654
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.31 E-value=4.5e-07 Score=69.19 Aligned_cols=41 Identities=41% Similarity=0.926 Sum_probs=34.1
Q ss_pred cccccCcCC---CCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 112 QCPICLEYP---LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 112 ~CPICLe~~---~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
.|+||++.+ ..++++.|||+||..|+..+. . ....||+|+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~--------~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-G--------KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-C--------CCCCCcCCCC
Confidence 499999887 357799999999999999887 1 2489999974
No 24
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.30 E-value=2.5e-07 Score=95.11 Aligned_cols=55 Identities=31% Similarity=0.484 Sum_probs=47.8
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
....+.|-||-+.+..|..|.|||.||.-||.+|+.. ...||+|+.......|+.
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~---------qp~CP~Cr~~~~esrlr~ 76 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT---------QPFCPVCREDPCESRLRG 76 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC---------CCCCccccccHHhhhccc
Confidence 3456889999999999999999999999999999975 369999999887766654
No 25
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.17 E-value=1.1e-06 Score=74.59 Aligned_cols=40 Identities=50% Similarity=1.049 Sum_probs=31.2
Q ss_pred cccccCcCCC------------Cc-EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcc
Q 005653 112 QCPICLEYPL------------CP-QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (685)
Q Consensus 112 ~CPICLe~~~------------~P-~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (685)
.|.||++.+. .+ ....|||.|+..||.+|+.. ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~---------~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ---------NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT---------SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc---------CCcCCCCC
Confidence 4999998872 22 24589999999999999975 25999997
No 26
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3e-07 Score=97.23 Aligned_cols=48 Identities=40% Similarity=0.850 Sum_probs=41.9
Q ss_pred CCCccccccCcCCCCcEEc-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 108 PLSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
..++.|||||+.+...+++ .|+|.||..||..-+..+. +.||.||..+
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn--------~ecptcRk~l 89 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN--------NECPTCRKKL 89 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC--------CCCchHHhhc
Confidence 3578999999999988876 5999999999999888754 8999999865
No 27
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.99 E-value=1.2e-06 Score=71.38 Aligned_cols=49 Identities=29% Similarity=0.762 Sum_probs=26.1
Q ss_pred CccccccCcCCCCcE-EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCce
Q 005653 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (685)
Q Consensus 110 ~~~CPICLe~~~~P~-~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (685)
.+.|++|.+.+..|+ +..|.|+||+.||-..+. ..||+|..+.-.+|++
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-----------~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-----------SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-----------TB-SSS--B-S-SS--
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-----------CCCCCcCChHHHHHHH
Confidence 578999999999998 579999999999966442 4699999987777765
No 28
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.3e-06 Score=88.68 Aligned_cols=46 Identities=39% Similarity=0.861 Sum_probs=40.6
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
..+.+.||||++.+..|++++|||.||..||..++. . ...||.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~--------~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-G--------PLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-C--------CcCCcccCC
Confidence 346789999999999999999999999999999887 1 279999994
No 29
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6.7e-06 Score=84.54 Aligned_cols=50 Identities=36% Similarity=0.862 Sum_probs=41.7
Q ss_pred CCCccccccCcCCCCcEEc-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 108 PLSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
....+||+|-+.|+.|.+. +|||+||+.||..-.... .++.||.|...+.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~-------asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD-------ASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch-------hhcccCccCCCCc
Confidence 3568999999999999965 599999999998877653 2589999998764
No 30
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=5.5e-06 Score=87.96 Aligned_cols=62 Identities=24% Similarity=0.530 Sum_probs=46.2
Q ss_pred CcCcCCCchhhhhhccCCCCCccccccCcCC-CC------------cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCC
Q 005653 90 DPDKMLQWEDIICVRYSNPLSVQCPICLEYP-LC------------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRC 156 (685)
Q Consensus 90 dpd~~l~w~~i~qv~~~~~~~~~CPICLe~~-~~------------P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~C 156 (685)
|.|.++.-..++|. ..++..|-||++.+ .. |..++|||++++.|+..|++.+ ..|
T Consensus 270 dl~~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq---------QTC 337 (491)
T COG5243 270 DLNAMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ---------QTC 337 (491)
T ss_pred HHHhhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc---------cCC
Confidence 44555544444443 45678999999873 22 4678999999999999999853 699
Q ss_pred CCccccc
Q 005653 157 PLCFVMI 163 (685)
Q Consensus 157 PlCr~~i 163 (685)
|+||.++
T Consensus 338 PICr~p~ 344 (491)
T COG5243 338 PICRRPV 344 (491)
T ss_pred CcccCcc
Confidence 9999964
No 31
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.78 E-value=1.6e-05 Score=68.87 Aligned_cols=35 Identities=29% Similarity=0.604 Sum_probs=28.3
Q ss_pred EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 125 ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 125 ~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
.-.|+|.|+..||++|+..+. ....||+||.....
T Consensus 49 ~g~C~H~FH~hCI~kWl~~~~------~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 49 WGKCSHNFHMHCILKWLSTQS------SKGQCPMCRQPWKF 83 (85)
T ss_pred eccCccHHHHHHHHHHHcccc------CCCCCCCcCCeeee
Confidence 347999999999999999753 23799999997643
No 32
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=8.3e-06 Score=64.00 Aligned_cols=46 Identities=33% Similarity=0.809 Sum_probs=40.1
Q ss_pred ccccccCcCCCCcEEccCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 111 VQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 111 ~~CPICLe~~~~P~~t~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
-+|.||.+-+++.++..|||. .|+.|-++.+... ...||+||.+|.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~--------~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL--------HGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc--------CCcCcchhhHHH
Confidence 579999999999999999995 6999999988753 379999999874
No 33
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=3.8e-05 Score=79.96 Aligned_cols=49 Identities=29% Similarity=0.697 Sum_probs=40.5
Q ss_pred CCCccccccCcCCCC---cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 108 PLSVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 108 ~~~~~CPICLe~~~~---P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
.....|.||++.++. -++++|.|.|+..|+..|+.- ...+||+|+..+.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~--------y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG--------YSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh--------hcccCCccCCCCC
Confidence 346899999988763 337899999999999999973 3479999999875
No 34
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=2.1e-05 Score=90.83 Aligned_cols=50 Identities=30% Similarity=0.633 Sum_probs=42.7
Q ss_pred CCccccccCcCCCC-----cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCC
Q 005653 109 LSVQCPICLEYPLC-----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (685)
Q Consensus 109 ~~~~CPICLe~~~~-----P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (685)
....|+||++.+.. |..++|||+||..|+..|++.. ..||+||..+....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~---------qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ---------QTCPTCRTVLYDYV 344 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh---------CcCCcchhhhhccc
Confidence 46789999999887 7899999999999999999863 69999999554443
No 35
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=3.9e-05 Score=80.05 Aligned_cols=51 Identities=31% Similarity=0.574 Sum_probs=43.0
Q ss_pred CccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCc
Q 005653 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (685)
.-.|+||+..+..|+.+.|+|.||+-||.--.... .+.|++||.+|...-+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd--------k~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKND--------KKTCAVCRFPIDSTID 57 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcC--------CCCCceecCCCCcchh
Confidence 45799999999999999999999999998766642 3679999999876543
No 36
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.51 E-value=4.9e-05 Score=61.36 Aligned_cols=44 Identities=41% Similarity=0.717 Sum_probs=30.8
Q ss_pred CCCccccccCcCCCCcEE-ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC
Q 005653 108 PLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL 158 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl 158 (685)
...+.|||.+..+.+|+. +.|||+|....|+.|+... ....||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~-------~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN-------GSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT-------S-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc-------CCCCCCC
Confidence 346899999999999996 5999999999999999321 3589998
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=7.1e-05 Score=80.64 Aligned_cols=45 Identities=36% Similarity=0.603 Sum_probs=36.9
Q ss_pred ccccccCcCCCC---cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 111 VQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 111 ~~CPICLe~~~~---P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
..|.||||.+.. -++++|+|.|+..||-.|+... ...||+|+..+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~--------r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT--------RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc--------CccCCCCCCcC
Confidence 389999998763 4579999999999999999852 14699998844
No 38
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.34 E-value=5.7e-05 Score=79.89 Aligned_cols=48 Identities=38% Similarity=0.821 Sum_probs=40.9
Q ss_pred CCccccccCcCCCCcE-EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~-~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
....|.+|-.+++++. ++.|-|.||..||++|+.. ...||.|...|..
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~---------~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE---------SKYCPTCDIVIHK 62 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHH---------hccCCccceeccC
Confidence 4578999999999887 6789999999999999986 3799999775543
No 39
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00013 Score=80.47 Aligned_cols=49 Identities=31% Similarity=0.688 Sum_probs=43.2
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
..++.|.||...+..|+.|+|||.||..||.+.+.. ...||+|+..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~---------~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ---------ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc---------CCCCccccccccc
Confidence 568999999999999999999999999999996652 3799999998764
No 40
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.16 E-value=0.00017 Score=74.87 Aligned_cols=89 Identities=28% Similarity=0.456 Sum_probs=61.7
Q ss_pred CCCCccccc---cccceeeecCCCCCCCCCCCcCcCCCchhhhhhc---cCCCC----------CccccccCcCCCCcEE
Q 005653 62 RPYNKDLFL---QANYKFVVLDTGDHAPESMDPDKMLQWEDIICVR---YSNPL----------SVQCPICLEYPLCPQI 125 (685)
Q Consensus 62 ~~~~k~~fl---~aN~~FvV~~~~~y~~~~~dpd~~l~w~~i~qv~---~~~~~----------~~~CPICLe~~~~P~~ 125 (685)
+.|-|..+. -+|...++.+.|.|..+..|. -.|++-.+-. ...++ .+.||.|...+.+|+.
T Consensus 213 k~FLk~ve~p~e~~~a~imit~EG~yVv~qpdv---qsWe~Yq~r~~a~~~~~Dqv~k~~~~~i~LkCplc~~Llrnp~k 289 (427)
T COG5222 213 KDFLKPVEGPNEPSNAAIMITPEGGYVVAQPDV---QSWEKYQQRTKAVAEIPDQVYKMQPPNISLKCPLCHCLLRNPMK 289 (427)
T ss_pred HHhcccccCCCcccccceEEcCCCCeEEeccch---HHHHHHHHHHHhhhhCchhhhccCCCCccccCcchhhhhhCccc
Confidence 345554433 456778899999998765442 2576543311 01111 3899999999999998
Q ss_pred c-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 126 T-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 126 t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
| .|||.||..||..-|... -++||.|..
T Consensus 290 T~cC~~~fc~eci~~al~ds--------Df~CpnC~r 318 (427)
T COG5222 290 TPCCGHTFCDECIGTALLDS--------DFKCPNCSR 318 (427)
T ss_pred CccccchHHHHHHhhhhhhc--------cccCCCccc
Confidence 8 689999999998877653 389999944
No 41
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.13 E-value=0.00015 Score=71.28 Aligned_cols=45 Identities=29% Similarity=0.615 Sum_probs=38.6
Q ss_pred CccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
.+.|-||-..+..|++|.|||.||..|.++-+.- ...|-+|....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k---------g~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK---------GDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc---------CCcceecchhh
Confidence 4789999999999999999999999998876653 36899997754
No 42
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.08 E-value=0.00032 Score=75.42 Aligned_cols=57 Identities=28% Similarity=0.638 Sum_probs=46.1
Q ss_pred CccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEeec
Q 005653 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIEN 175 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~ 175 (685)
..-|-||-+--.+-.+-+|||..|-.|+..|....+ ...||.||..|...+ +|.+..
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~-------gq~CPFCRcEIKGte--~viid~ 425 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDE-------GQTCPFCRCEIKGTE--PVIIDP 425 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCC-------CCCCCceeeEecccc--ceeeec
Confidence 356999999888888999999999999999987643 379999999886655 444443
No 43
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00024 Score=74.08 Aligned_cols=46 Identities=33% Similarity=0.713 Sum_probs=39.7
Q ss_pred CccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
.+.|-||..++..|++|.|||.||..|-+..+.. ..+|++|...+.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk---------~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK---------GEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc---------CCcceecccccc
Confidence 5779999999999999999999999998877653 369999987653
No 44
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.80 E-value=0.00053 Score=75.99 Aligned_cols=55 Identities=29% Similarity=0.524 Sum_probs=44.8
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCC
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (685)
..+..|-+|-++..+++.+.|.|.||.-||..|+..--+. ....||.|...+...
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~----~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMEN----NNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcc----cCCCCcccccccccc
Confidence 3568899999999999999999999999999998753221 237999998877543
No 45
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.00064 Score=74.95 Aligned_cols=48 Identities=29% Similarity=0.555 Sum_probs=37.4
Q ss_pred CCccccccCcCCC-----------------CcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPL-----------------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~-----------------~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
....|+||+.... +-+.|+|.|+|...|+++|+..- ...||.||.++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y--------kl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY--------KLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh--------cccCCccCCCCC
Confidence 3567999997531 12357999999999999999852 269999999874
No 46
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0014 Score=70.42 Aligned_cols=48 Identities=25% Similarity=0.582 Sum_probs=39.5
Q ss_pred CCCccccccCcCCCCcEEccCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
.....|-||+..+.+-++++|.|. .|..|-..+.-. ..+||+||.+|.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q---------~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ---------TNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh---------hcCCCccccchH
Confidence 346789999999999999999995 599997665532 269999999874
No 47
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0012 Score=70.20 Aligned_cols=49 Identities=33% Similarity=0.731 Sum_probs=42.7
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
.++..||||..-++..+.++|||.-|+.||.+++.. .+.|-.|...+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN---------~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN---------CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc---------CCeeeEecceeee
Confidence 467889999999999999999999999999999975 3689999876543
No 48
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0013 Score=70.77 Aligned_cols=51 Identities=27% Similarity=0.728 Sum_probs=36.1
Q ss_pred CccccccCcCCCCcE----EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCC
Q 005653 110 SVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (685)
Q Consensus 110 ~~~CPICLe~~~~P~----~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (685)
...|.||.+-.-.-. +-.|||+|...|+..|+.... ..+.||+|+-.+...
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P------s~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP------SNRGCPICQIKLQER 58 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC------ccCCCCceeecccce
Confidence 357999965432221 445999999999999998754 127999998444443
No 49
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.38 E-value=0.00091 Score=78.77 Aligned_cols=52 Identities=33% Similarity=0.699 Sum_probs=45.7
Q ss_pred ccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 111 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 111 ~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
..|+||++ +..+.++.|||.||..|+...+.... ...||+|+..+..+.+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~-------~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE-------NAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccccc-------CCCCcHHHHHHHHHHHhh
Confidence 89999999 88889999999999999999998754 248999999988877765
No 50
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0012 Score=69.94 Aligned_cols=54 Identities=31% Similarity=0.780 Sum_probs=42.3
Q ss_pred CCCCCccccccCcCCCCcEE-ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCc
Q 005653 106 SNPLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (685)
Q Consensus 106 ~~~~~~~CPICLe~~~~P~~-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (685)
..+....||||+-.-.+|.+ +.-|-+||++||.+|+.. ...||+-..++...++
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~---------~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN---------YGHCPVTGYPASVDHL 350 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh---------cCCCCccCCcchHHHH
Confidence 34456789999998888875 456999999999999984 4799997776554443
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.35 E-value=0.0013 Score=72.19 Aligned_cols=45 Identities=29% Similarity=0.670 Sum_probs=36.5
Q ss_pred CCccccccCcCCCCcE----EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~----~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
+-.+|||||+.+..-+ .+.|.|.|...|+..|.. ..||+||-...
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~-----------~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD-----------SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc-----------CcChhhhhhcC
Confidence 4578999998776443 467999999999999975 58999987655
No 52
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.0033 Score=64.12 Aligned_cols=55 Identities=11% Similarity=0.243 Sum_probs=46.1
Q ss_pred CCccccccCcCCCCcE----EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeE
Q 005653 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIH 172 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~----~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~ 172 (685)
..+.||||.+.+.+.+ .-+|||+||+.|..+++.- -..||+|..++..++|..+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~---------D~v~pv~d~plkdrdiI~Lq 278 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK---------DMVDPVTDKPLKDRDIIGLQ 278 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc---------cccccCCCCcCcccceEeee
Confidence 5689999999887654 5689999999999999863 37999999999988887643
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.29 E-value=0.0018 Score=72.04 Aligned_cols=55 Identities=33% Similarity=0.730 Sum_probs=45.8
Q ss_pred CCCCccccccCcCCCCcEE-ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 107 NPLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
....+.||||...+..|.. +.|||.||..|+..|+.. ...||.|+..+......+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~---------~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN---------HQKCPVCRQELTQAEELP 73 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc---------CcCCcccccccchhhccC
Confidence 3467899999999999998 599999999999999975 279999988776655443
No 54
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.001 Score=72.16 Aligned_cols=56 Identities=29% Similarity=0.619 Sum_probs=42.8
Q ss_pred CccccccCcCCCCcE-----EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeE
Q 005653 110 SVQCPICLEYPLCPQ-----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIH 172 (685)
Q Consensus 110 ~~~CPICLe~~~~P~-----~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~ 172 (685)
...|||||+..+-|. .+.|||.|-..||.+|+. + +....||.|...-.+++|++.+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~--k-----~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG--K-----KTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHh--h-----hhhhhCcccCChhHHHHHHHHH
Confidence 568999998765443 468999999999999994 1 1357999998877666666533
No 55
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0032 Score=67.76 Aligned_cols=44 Identities=32% Similarity=0.806 Sum_probs=36.8
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
...-|-||++.+.+.+..+|||..| |..-+... ..||+||..|.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l----------~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL----------PQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhhC----------CCCchhHHHHH
Confidence 4578999999999999999999987 87766543 57999998774
No 56
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.06 E-value=0.006 Score=64.17 Aligned_cols=53 Identities=17% Similarity=0.394 Sum_probs=40.3
Q ss_pred CCCccccccCcCCCCcE----EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 108 PLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~----~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
...+.|||+...+..-. +.+|||+||..||...- . ...||+|..++...|+.+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~-------~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---K-------SKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---c-------cccccccCCccccCCEEE
Confidence 45689999998874322 56899999999998863 1 257999999887666543
No 57
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0043 Score=67.36 Aligned_cols=54 Identities=28% Similarity=0.597 Sum_probs=39.6
Q ss_pred CCCccccccCcCCCCcE-----E---ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 108 PLSVQCPICLEYPLCPQ-----I---TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~-----~---t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
..+..|-||++...+.. . .+|-|.||..||..|-....... +-.+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~--~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFES--KTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcccc--ccccCCCcccCcc
Confidence 45789999998766544 2 57999999999999986533111 1258999998754
No 58
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.91 E-value=0.0074 Score=69.96 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=38.5
Q ss_pred CCccccccCcCCCCcE---EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCC
Q 005653 109 LSVQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~---~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (685)
....||+|+..+.+.. -..|+|+||..||..|... ...||+|+..|..-.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~---------aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC---------AQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh---------cccCchhhhhhheee
Confidence 4568999997654433 2479999999999999875 369999998886543
No 59
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0026 Score=66.32 Aligned_cols=42 Identities=31% Similarity=0.767 Sum_probs=34.9
Q ss_pred CccccccCcCCCCcEEccCCCcc-cHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 110 SVQCPICLEYPLCPQITSCGHIF-CFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiF-C~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
..-|.||++.|.+-+.+.|||.. |..|-. ....||+||..|.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-------------rm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGK-------------RMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcc-------------ccccCchHHHHHH
Confidence 56799999999999999999955 998832 3569999998663
No 60
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.65 E-value=0.0029 Score=53.27 Aligned_cols=55 Identities=33% Similarity=0.762 Sum_probs=25.5
Q ss_pred CccccccCcCCC-C---cEE----ccCCCcccHHHHHHHHHcCCCCCC--CCCcCCCCCcccccC
Q 005653 110 SVQCPICLEYPL-C---PQI----TSCGHIFCFPCILQYLLMGDEDYK--GDCFKRCPLCFVMIS 164 (685)
Q Consensus 110 ~~~CPICLe~~~-~---P~~----t~CGHiFC~~CI~~~l~~~~~~~k--~~~~~~CPlCr~~i~ 164 (685)
+..|+||..... . |.. ..|++.|...||..|+........ ..-...||.|+..|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999997644 2 332 379999999999999986432111 111247999998764
No 61
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.61 E-value=0.0038 Score=73.49 Aligned_cols=49 Identities=22% Similarity=0.544 Sum_probs=38.9
Q ss_pred CCccccccCcCCC-------CcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPL-------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~-------~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
...+|+||...+. .-++..|.|.|+-.||..|+..+. ...||+||..|.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~-------~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA-------RSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC-------CCCCCccccccc
Confidence 4568999987643 334677999999999999999864 479999997653
No 62
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.02 E-value=0.027 Score=44.13 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=33.7
Q ss_pred cccccCc--CCCCcEEccCC-----CcccHHHHHHHHHcCCCCCCCCCcCCCCCcc
Q 005653 112 QCPICLE--YPLCPQITSCG-----HIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (685)
Q Consensus 112 ~CPICLe--~~~~P~~t~CG-----HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (685)
.|-||++ ....+.+.+|. |.+...||.+|+.... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~-------~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG-------NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC-------CCcCCCCC
Confidence 4899996 55677788885 7899999999998643 36899994
No 63
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.017 Score=62.90 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=42.7
Q ss_pred CCCccccccCcCC---CCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceee
Q 005653 108 PLSVQCPICLEYP---LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (685)
Q Consensus 108 ~~~~~CPICLe~~---~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (685)
+..+.|||=.+.- .-|+++.|||+.|..-|.+....+. ..++||.|-......+.+.|
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~------~sfKCPYCP~e~~~~~~kql 392 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGS------QSFKCPYCPVEQLASDTKQL 392 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCC------eeeeCCCCCcccCHHhcccc
Confidence 4568999966543 3477999999999999999887643 35999999665555554443
No 64
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.29 E-value=0.052 Score=52.39 Aligned_cols=36 Identities=28% Similarity=0.563 Sum_probs=26.3
Q ss_pred CCccccccCcCCCCcEEccC------------CCcc-cHHHHHHHHHcC
Q 005653 109 LSVQCPICLEYPLCPQITSC------------GHIF-CFPCILQYLLMG 144 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~C------------GHiF-C~~CI~~~l~~~ 144 (685)
++..||||++.|.+++++.| +..| ...||.+|.+..
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAY 49 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHh
Confidence 35689999999999997653 3322 367888887753
No 65
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.25 E-value=0.013 Score=60.14 Aligned_cols=42 Identities=40% Similarity=0.989 Sum_probs=29.1
Q ss_pred ccccccCcCCC-CcE-EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 111 VQCPICLEYPL-CPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 111 ~~CPICLe~~~-~P~-~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
..|-.|.--+. .+- +|.|+|+||..|.--- ....||+|+..+
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-----------~~~~C~lCkk~i 47 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-----------SPDVCPLCKKSI 47 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC-----------Ccccccccccee
Confidence 35888875443 333 7999999999996321 113999998854
No 66
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.015 Score=60.17 Aligned_cols=53 Identities=25% Similarity=0.516 Sum_probs=40.4
Q ss_pred CCccccccCcCCC----------CcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCc
Q 005653 109 LSVQCPICLEYPL----------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (685)
Q Consensus 109 ~~~~CPICLe~~~----------~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (685)
++..|.||-..+. +-..+.|+|+|.-.||..|.-.++ ...||.|.+.+..+.+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK-------kqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK-------KQTCPYCKEKVDLKRM 285 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC-------CCCCchHHHHhhHhhh
Confidence 4577999986543 233678999999999999998754 3799999886654443
No 67
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.042 Score=57.67 Aligned_cols=51 Identities=31% Similarity=0.845 Sum_probs=41.2
Q ss_pred cccccCc-CCCCcE----EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 112 QCPICLE-YPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 112 ~CPICLe-~~~~P~----~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
.||+|-. .+.+|- +-.|||..|-.|+-+.+..+. ..||-|...+.+..++-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~--------~~CpeC~~iLRk~nfr~ 57 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP--------AQCPECMVILRKNNFRV 57 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC--------CCCCcccchhhhcccch
Confidence 5999994 456654 347999999999999998754 79999999888877654
No 68
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.032 Score=47.19 Aligned_cols=32 Identities=31% Similarity=0.636 Sum_probs=27.0
Q ss_pred cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 127 SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 127 ~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
.|.|.|..-||++|+.... ....||+||..+.
T Consensus 50 ~C~h~fh~hCI~~wl~~~t------sq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPT------SQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCcc------ccccCCcchheeE
Confidence 6999999999999999765 2479999998653
No 69
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=93.41 E-value=0.014 Score=67.87 Aligned_cols=64 Identities=30% Similarity=0.514 Sum_probs=49.7
Q ss_pred hhhhccCCCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCce
Q 005653 100 IICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (685)
Q Consensus 100 i~qv~~~~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (685)
+.+|+......++||||+.....|..+.|-|+||..|+...+.... ....||+|...+.+..++
T Consensus 11 ~~~vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~------~~~~~~lc~~~~eK~s~~ 74 (684)
T KOG4362|consen 11 VAQVINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKK------GPKQCALCKSDIEKRSLR 74 (684)
T ss_pred HHhHHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccC------ccccchhhhhhhhhhhcc
Confidence 3444444456789999999999999999999999999988776543 247999999777665554
No 70
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.29 E-value=0.05 Score=57.54 Aligned_cols=73 Identities=22% Similarity=0.365 Sum_probs=48.8
Q ss_pred cCcCCCchhh--hhhccCC------CCCccccccCcCC---CCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 005653 91 PDKMLQWEDI--ICVRYSN------PLSVQCPICLEYP---LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (685)
Q Consensus 91 pd~~l~w~~i--~qv~~~~------~~~~~CPICLe~~---~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (685)
-+++++|.+- +.+.+.. +.-+.||+=-+.. ..|+|+.|||+.-...+.+..+.+. -.++||.|
T Consensus 309 ~~kHvdWT~~~eLP~eIklp~~~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~------~~FKCPYC 382 (396)
T COG5109 309 FDKHVDWTDDSELPMEIKLPKGRHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV------LSFKCPYC 382 (396)
T ss_pred HhhccCccCCCCCceEEecCCcccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc------EEeeCCCC
Confidence 4678888543 2222222 2458899865543 3578999999999999888776654 35999999
Q ss_pred ccccCCCCce
Q 005653 160 FVMISSKELY 169 (685)
Q Consensus 160 r~~i~~~~L~ 169 (685)
-..-...+..
T Consensus 383 P~~~~~~~~~ 392 (396)
T COG5109 383 PEMSKYENIL 392 (396)
T ss_pred Ccchhhhhhh
Confidence 6654444443
No 71
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.10 E-value=0.083 Score=45.15 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=25.2
Q ss_pred ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 126 TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 126 t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
-.|.|.|..-||.+|+... ..||+|+...
T Consensus 52 G~CnHaFH~HCI~rWL~Tk---------~~CPld~q~w 80 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDTK---------GVCPLDRQTW 80 (88)
T ss_pred EecchHHHHHHHHHHHhhC---------CCCCCCCcee
Confidence 4699999999999999862 6999999865
No 72
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.058 Score=57.60 Aligned_cols=46 Identities=30% Similarity=0.618 Sum_probs=38.0
Q ss_pred CccccccCcCCC------CcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 110 SVQCPICLEYPL------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 110 ~~~CPICLe~~~------~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
...|-||-+.+. .|+++.|||.||..|+...+... +..||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~--------~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS--------RILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCc--------eeeccCCCCcc
Confidence 357999997653 58889999999999999888753 47889999984
No 73
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=0.061 Score=58.90 Aligned_cols=50 Identities=24% Similarity=0.616 Sum_probs=35.8
Q ss_pred CCccccccCcCCCCc---EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 005653 109 LSVQCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (685)
Q Consensus 109 ~~~~CPICLe~~~~P---~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (685)
..+.|.||.+..... +.++|+|+||..|+..|+......+. -...+||-|
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~-v~~l~Cp~~ 235 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQ-VSCLKCPDP 235 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcce-eeeecCCCC
Confidence 468899999876542 36899999999999999986532211 123678764
No 74
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=0.047 Score=57.59 Aligned_cols=59 Identities=27% Similarity=0.545 Sum_probs=38.1
Q ss_pred CCCchhhhhhc---cCCCCCccccccCcC-CCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 94 MLQWEDIICVR---YSNPLSVQCPICLEY-PLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 94 ~l~w~~i~qv~---~~~~~~~~CPICLe~-~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
.+.|+.-+-++ ...+..-.|--|--. .+--+|.+|.|+||+.|-... ..+.||.|-+.|
T Consensus 71 hl~w~~~V~~~gek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~-----------~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 71 HLTWIKPVGRRGEKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSD-----------SDKICPLCDDRV 133 (389)
T ss_pred ceeeeeecccccccccCcceEeecccCCcceeeecccccchhhhhhhhhcC-----------ccccCcCcccHH
Confidence 57786544332 122234567777644 345679999999999996421 137999998755
No 75
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.10 E-value=0.075 Score=42.44 Aligned_cols=46 Identities=22% Similarity=0.571 Sum_probs=35.9
Q ss_pred CccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCC
Q 005653 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (685)
...|-.|...-...++++|||..|..|.-- .++..||+|..+|...
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~-----------~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG-----------ERYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh-----------hhccCCCCCCCcccCC
Confidence 456778888878888999999999999532 1468999999887544
No 76
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.93 E-value=0.096 Score=53.76 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=31.9
Q ss_pred CccccccCcCCCCcEEccCCCcccHHHHHHHHHcC
Q 005653 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMG 144 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~ 144 (685)
.-.|.+||.+..+|++++=||+||..||+.|+-.+
T Consensus 43 FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred cceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 34689999999999999999999999999999764
No 77
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.23 E-value=0.14 Score=54.91 Aligned_cols=47 Identities=28% Similarity=0.636 Sum_probs=38.5
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
.+...|-||-+-.+-...++|||..|.-|-++.-..-. .+.||+|+.
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~-------~K~C~~CrT 105 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM-------QKGCPLCRT 105 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh-------ccCCCcccc
Confidence 35678999999888778999999999999887765422 379999976
No 78
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.12 E-value=0.22 Score=46.80 Aligned_cols=51 Identities=24% Similarity=0.551 Sum_probs=43.4
Q ss_pred CCccccccCcCCCCcEEcc----CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPLCPQITS----CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~----CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
.-.+|-||.+...+.+.++ ||-..|.-|....|+... -...||.|...+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~------~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN------LYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc------cCCCCCcccccccc
Confidence 5689999999988888654 999999999999998765 46899999987754
No 79
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.99 E-value=0.14 Score=39.91 Aligned_cols=43 Identities=30% Similarity=0.528 Sum_probs=21.2
Q ss_pred ccccCcCCCCc--EE--ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 113 CPICLEYPLCP--QI--TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 113 CPICLe~~~~P--~~--t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
||+|.+.+... .+ -.||+.+|..|..+.+... ...||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~--------~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE--------GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS---------SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc--------CCCCCCCCCCC
Confidence 89999876321 13 3689999999988877532 37999999853
No 80
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=90.62 E-value=0.13 Score=56.48 Aligned_cols=37 Identities=27% Similarity=0.665 Sum_probs=32.6
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcC
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMG 144 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~ 144 (685)
++++.||||..-+..|++++|||..|.-|-...+...
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQT 38 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcccC
Confidence 3678999999999999999999999999988766543
No 81
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.52 E-value=0.097 Score=60.00 Aligned_cols=32 Identities=31% Similarity=0.705 Sum_probs=26.3
Q ss_pred ccccccCcCCC----CcEEccCCCcccHHHHHHHHH
Q 005653 111 VQCPICLEYPL----CPQITSCGHIFCFPCILQYLL 142 (685)
Q Consensus 111 ~~CPICLe~~~----~P~~t~CGHiFC~~CI~~~l~ 142 (685)
+.|+||+..+. .|+.+.|||..|..|+.....
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh
Confidence 47999987765 578889999999999976543
No 82
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.34 E-value=0.087 Score=53.78 Aligned_cols=57 Identities=26% Similarity=0.626 Sum_probs=43.4
Q ss_pred CccccccCc-CCCCcEE----c-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCC--CcccccCCCCceeeEee
Q 005653 110 SVQCPICLE-YPLCPQI----T-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCP--LCFVMISSKELYTIHIE 174 (685)
Q Consensus 110 ~~~CPICLe-~~~~P~~----t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CP--lCr~~i~~~~L~~v~~~ 174 (685)
+..||||.. .+.+|-| - .|-|..|-.|+.+.+..+. ..|| -|...+.+..++.-.+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~Gp--------AqCP~~gC~kILRK~kf~~qtFe 74 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGP--------AQCPYKGCGKILRKIKFIKQTFE 74 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCC--------CCCCCccHHHHHHHhcccccccc
Confidence 568999994 4666653 2 4999999999999998765 7899 79988877666554443
No 83
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=89.70 E-value=0.63 Score=43.95 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=49.2
Q ss_pred CceEEEecCCCCceeechhcHHHHHHhhCCCCCCCccceeeEEEEEeeeccH-HHHHHhccccccCCCceEEEEEec
Q 005653 431 DSYNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQSE-AMRRRYRYLSHFSLTTTFQLCEID 506 (685)
Q Consensus 431 ~~yyFYQa~dGq~~yLhPLdiriL~~~fGsy~~~P~~I~~rV~eie~~tvde-~lRkR~KYLsHLPlgce~~f~E~D 506 (685)
.+|.=|+. +++|||||.=++.- .-..-|.-|.|+|++||..++++ .--.|| +||.||.|..|++.
T Consensus 62 ~~~~af~~-~~~~YFL~~~s~~~------~~~~~~~w~vgrI~~~e~~~v~~~~~~Npy----~Lp~Gt~~y~V~v~ 127 (129)
T PF10377_consen 62 QPWAAFNV-GCPHYFLHEDSIAA------NELKRREWIVGRIVSIEECQVKDDKDSNPY----NLPVGTKFYRVTVE 127 (129)
T ss_pred cceEEeeC-CCceEEEecccchh------ccCCCCCEEEEEEEEEEEEEeccCCCCCCC----cCCCCCEEEEEEEE
Confidence 45777777 57999999988764 12233899999999999988852 122454 69999999999875
No 84
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.62 E-value=0.056 Score=56.82 Aligned_cols=56 Identities=34% Similarity=0.611 Sum_probs=38.2
Q ss_pred CCccccccCcCCC-Cc--EEccCCCcccHHHHHHHHHcCCC-------C-------CCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPL-CP--QITSCGHIFCFPCILQYLLMGDE-------D-------YKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~-~P--~~t~CGHiFC~~CI~~~l~~~~~-------~-------~k~~~~~~CPlCr~~i~ 164 (685)
..-.|.|||.-|. .| ..|.|-|.|.+.|+.+|+..-.. + -+..-...||+|+..|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4578999997654 33 37899999999999999874210 0 01111246999998663
No 85
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=89.32 E-value=0.25 Score=53.03 Aligned_cols=44 Identities=27% Similarity=0.671 Sum_probs=35.4
Q ss_pred CCccccccCcCCCCcEE-ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
+-+.||||.+.+..|.+ -.=||+-|..|-.+. ..+||.|+.++.
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~------------~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV------------SNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccceecCCCcEehhhhhhhh------------cccCCccccccc
Confidence 45789999999888863 345999999997532 369999999886
No 86
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.77 E-value=0.16 Score=55.16 Aligned_cols=47 Identities=28% Similarity=0.537 Sum_probs=36.5
Q ss_pred CCccccccCcCCC----CcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 005653 109 LSVQCPICLEYPL----CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (685)
Q Consensus 109 ~~~~CPICLe~~~----~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (685)
.++.|-.|-+.+- .-.-++|.|||...|+..++... ....||.|+..
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n-------~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN-------GTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC-------CCCCCccHHHH
Confidence 4688999997642 22358999999999999999653 24899999853
No 87
>PHA03096 p28-like protein; Provisional
Probab=88.44 E-value=0.25 Score=52.72 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=27.2
Q ss_pred ccccccCcCCCC--------cEEccCCCcccHHHHHHHHHcCC
Q 005653 111 VQCPICLEYPLC--------PQITSCGHIFCFPCILQYLLMGD 145 (685)
Q Consensus 111 ~~CPICLe~~~~--------P~~t~CGHiFC~~CI~~~l~~~~ 145 (685)
-.|.||++.... ..+..|-|.||..|+..|.....
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~ 221 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL 221 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh
Confidence 679999986432 12457999999999999998643
No 88
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=88.39 E-value=0.74 Score=54.76 Aligned_cols=55 Identities=29% Similarity=0.577 Sum_probs=40.7
Q ss_pred CCCCCccccccCcCC--CCcE--EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 005653 106 SNPLSVQCPICLEYP--LCPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (685)
Q Consensus 106 ~~~~~~~CPICLe~~--~~P~--~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (685)
+....++|-||.+.+ .+|+ ...|-|+|.+.||..|-...+. .+....+||.|...
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek--~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEK--TGQDGWRCPACQSV 245 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhh--ccCccccCCcccch
Confidence 455689999999875 4565 4569999999999999887321 12245789999843
No 89
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=88.15 E-value=0.44 Score=50.99 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=38.5
Q ss_pred CCccccccCcCCCCcE----EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEe
Q 005653 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~----~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (685)
++--||+|++++...- -.+||-..|.-|.-..-..- ..+||-||.......++-+.+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~l--------ngrcpacrr~y~denv~~~~~ 73 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNL--------NGRCPACRRKYDDENVRYVTL 73 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhc--------cCCChHhhhhccccceeEEec
Confidence 3445999999764322 34689888888865543321 269999999887777654433
No 90
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.06 E-value=0.4 Score=43.08 Aligned_cols=26 Identities=38% Similarity=0.781 Sum_probs=23.1
Q ss_pred cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 127 SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 127 ~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
.|.|.|.+-||.+|+++. ..||+|..
T Consensus 80 ~CNHaFH~hCisrWlktr---------~vCPLdn~ 105 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR---------NVCPLDNK 105 (114)
T ss_pred ecchHHHHHHHHHHHhhc---------CcCCCcCc
Confidence 599999999999999873 58999976
No 91
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.19 E-value=0.68 Score=52.54 Aligned_cols=63 Identities=29% Similarity=0.510 Sum_probs=42.9
Q ss_pred CCCccccccCcCCCC-cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--cccccCCCCceee
Q 005653 108 PLSVQCPICLEYPLC-PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKELYTI 171 (685)
Q Consensus 108 ~~~~~CPICLe~~~~-P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl--Cr~~i~~~~L~~v 171 (685)
....+|.||.+.+.. .....|||.||..|+..|+...-..+.... .+||. |...+....+..+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~-i~cp~~~C~a~v~~~~i~~~ 133 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAK-IKCPAHGCPALVGEDTVEKL 133 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeecccccc-ccCCCCCccccCCCceeeee
Confidence 345789999988775 556789999999999999986432211111 45654 7776665555443
No 92
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.08 E-value=0.2 Score=61.75 Aligned_cols=44 Identities=34% Similarity=0.691 Sum_probs=37.3
Q ss_pred CCccccccCcCCC-CcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 109 LSVQCPICLEYPL-CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 109 ~~~~CPICLe~~~-~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
....|+||++.+. ...++.|||.+|..|+.-|+.. ...||+|..
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~---------~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA---------SSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH---------hccCcchhh
Confidence 4558999999888 4558899999999999999985 379999973
No 93
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=84.54 E-value=0.41 Score=42.77 Aligned_cols=31 Identities=26% Similarity=0.622 Sum_probs=25.5
Q ss_pred CCCccccccCcCCCCcE--EccCCCcccHHHHH
Q 005653 108 PLSVQCPICLEYPLCPQ--ITSCGHIFCFPCIL 138 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~--~t~CGHiFC~~CI~ 138 (685)
.....|++|-..+.... +.+|||+|+..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45677999999887655 57999999999974
No 94
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.48 E-value=1.1 Score=45.67 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=38.9
Q ss_pred CCccccccCcCCC--CcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 109 LSVQCPICLEYPL--CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 109 ~~~~CPICLe~~~--~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
-...|.+|-..+. +.+.+.|-|.|.|.|+-.|-..-...-. .....||.|...|
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTA-PaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTA-PAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCC-CCcccCCCCCCcc
Confidence 3567999998765 3456789999999999999875432211 1247899997755
No 95
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=84.47 E-value=0.4 Score=59.28 Aligned_cols=60 Identities=27% Similarity=0.423 Sum_probs=39.5
Q ss_pred CCccccccCcC-CC-CcE-EccCCCcccHHHHHHHHHcCCCCCC-CCCcCCCCCcccccCCCCc
Q 005653 109 LSVQCPICLEY-PL-CPQ-ITSCGHIFCFPCILQYLLMGDEDYK-GDCFKRCPLCFVMISSKEL 168 (685)
Q Consensus 109 ~~~~CPICLe~-~~-~P~-~t~CGHiFC~~CI~~~l~~~~~~~k-~~~~~~CPlCr~~i~~~~L 168 (685)
.+-.|-||... +. +|. .+.|||+|.+.|..+.+...-.-.+ .-+...||+|...|..--|
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~L 3548 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVL 3548 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHH
Confidence 35679999954 33 444 5899999999999888875321000 0012479999988765433
No 96
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.22 E-value=0.6 Score=48.97 Aligned_cols=55 Identities=24% Similarity=0.492 Sum_probs=38.7
Q ss_pred CCccccccCcCCCCcEEccC----CCcccHHHHHHHHHcCCCCCCCC--CcCCCCCccccc
Q 005653 109 LSVQCPICLEYPLCPQITSC----GHIFCFPCILQYLLMGDEDYKGD--CFKRCPLCFVMI 163 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~C----GHiFC~~CI~~~l~~~~~~~k~~--~~~~CPlCr~~i 163 (685)
..+.|-+|.+.+.+.....| .|.||++|-...++.+...+..- ..-+||+-...+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~v 327 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNV 327 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCcc
Confidence 45899999999998888777 79999999999988754221100 123666655443
No 97
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.52 E-value=0.66 Score=51.69 Aligned_cols=57 Identities=28% Similarity=0.604 Sum_probs=37.3
Q ss_pred CCccccccC-cCCCCcE---EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--cccccCCCCc
Q 005653 109 LSVQCPICL-EYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKEL 168 (685)
Q Consensus 109 ~~~~CPICL-e~~~~P~---~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl--Cr~~i~~~~L 168 (685)
....|.||. +.+.... +..|||.||..|+.+|+..... ......||. |...+....+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~---~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLL---SGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhc---cCCCccCCCCCCCccCCHHHH
Confidence 357899999 5555433 4679999999999999986421 112356754 5444444333
No 98
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.08 E-value=0.83 Score=53.78 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=25.2
Q ss_pred ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 126 TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 126 t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
-.|+|.||..||+.|........ ....|++|...|
T Consensus 119 ~~~~~~~CP~Ci~s~~DqL~~~~---k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 119 QTHVENQCPNCLKSCNDQLEESE---KHTAHYFCEECV 153 (1134)
T ss_pred hhhhhhhhhHHHHHHHHHhhccc---cccccccHHHHh
Confidence 35999999999999998654322 235677776555
No 99
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=81.36 E-value=1.8 Score=34.04 Aligned_cols=47 Identities=26% Similarity=0.629 Sum_probs=23.5
Q ss_pred CccccccCcCCCCcE-EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 110 ~~~CPICLe~~~~P~-~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
.+.|||....+..|+ -..|.|.-|++ +..|+...... ....||+|.+
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~----~~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRT----PKWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS-------B-TTT--
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhcc----CCeECcCCcC
Confidence 367999999988888 56899997754 34444432211 2378999976
No 100
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.91 E-value=1 Score=53.99 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=28.5
Q ss_pred CCccccccCcCC-CCcE-EccCCCcccHHHHHHHHHcC
Q 005653 109 LSVQCPICLEYP-LCPQ-ITSCGHIFCFPCILQYLLMG 144 (685)
Q Consensus 109 ~~~~CPICLe~~-~~P~-~t~CGHiFC~~CI~~~l~~~ 144 (685)
..-+|-+|.-.+ ..|- +.+|||.|.+.||++.....
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~~ 853 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLSL 853 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchHHHHHHHHHHHcc
Confidence 356899999764 4555 57999999999999987753
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=78.72 E-value=0.84 Score=35.43 Aligned_cols=33 Identities=27% Similarity=0.764 Sum_probs=21.6
Q ss_pred EEccCC-CcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 124 QITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 124 ~~t~CG-HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
-...|. |..|+.|+...+.. +..||+|..++..
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~---------s~~C~iC~~~LPt 47 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSR---------SDRCPICGKPLPT 47 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SS---------SSEETTTTEE---
T ss_pred CeeeecchhHHHHHHHHHhcc---------ccCCCcccCcCcc
Confidence 356776 88899999887764 4699999988743
No 102
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=78.40 E-value=1.3 Score=48.59 Aligned_cols=41 Identities=15% Similarity=0.534 Sum_probs=29.0
Q ss_pred CCCcccHHHHHHHHHcCCCCCCCCC----cCCCCCcccccCCCCc
Q 005653 128 CGHIFCFPCILQYLLMGDEDYKGDC----FKRCPLCFVMISSKEL 168 (685)
Q Consensus 128 CGHiFC~~CI~~~l~~~~~~~k~~~----~~~CPlCr~~i~~~~L 168 (685)
|.-..|..|+-+|+...++...... ...||+||+.+...|+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 4445689999999998764432222 3689999998876554
No 103
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.80 E-value=1.6 Score=52.16 Aligned_cols=40 Identities=25% Similarity=0.573 Sum_probs=33.1
Q ss_pred CccccccCcCCCCcEE-ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 110 SVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
...|..|-..+.-|.+ ..|||.|+..|+. . +..+||.|..
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~--------~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----D--------KEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----c--------CcccCCccch
Confidence 3589999999988884 6999999999986 1 2479999965
No 104
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=74.71 E-value=1.3 Score=42.00 Aligned_cols=34 Identities=24% Similarity=0.519 Sum_probs=26.0
Q ss_pred CCccccccCcCCCC--cE-EccCC------CcccHHHHHHHHH
Q 005653 109 LSVQCPICLEYPLC--PQ-ITSCG------HIFCFPCILQYLL 142 (685)
Q Consensus 109 ~~~~CPICLe~~~~--P~-~t~CG------HiFC~~CI~~~l~ 142 (685)
...+|.||++...+ .+ ...|| |.||..|+.+|-.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 36799999988766 44 34454 7899999999953
No 105
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.09 E-value=2.1 Score=43.70 Aligned_cols=38 Identities=26% Similarity=0.587 Sum_probs=30.5
Q ss_pred ccccCcCCCCcEEccCCC-cccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 113 CPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 113 CPICLe~~~~P~~t~CGH-iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
|-+|.+....-...+|-| ++|..|=.. ...||+|+.+.
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-------------~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-------------LRICPICRSPK 199 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-------------CccCCCCcChh
Confidence 999999888877899997 779999321 36899998764
No 106
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=70.25 E-value=4.4 Score=30.84 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=22.6
Q ss_pred ccccCcCCCCcEEc---cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 005653 113 CPICLEYPLCPQIT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (685)
Q Consensus 113 CPICLe~~~~P~~t---~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (685)
|-+|-+..+..+.- .|+=.+...|+..|+.... ..+||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~-------~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS-------NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S-------S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC-------CCCCcCC
Confidence 66788776666642 4988899999999998643 2479987
No 107
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=68.85 E-value=2.6 Score=44.76 Aligned_cols=44 Identities=30% Similarity=0.688 Sum_probs=34.5
Q ss_pred CCccccccCcCC----CCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 109 LSVQCPICLEYP----LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 109 ~~~~CPICLe~~----~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
....||||.+.+ ..+...+|||.....|+..+... . -.||+|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~--------~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE--------G-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc--------C-CCCCcccc
Confidence 355699999764 35668899999999998877653 3 79999976
No 108
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.59 E-value=4.9 Score=41.83 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=35.6
Q ss_pred CCccccccCcCCCCcE----EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCc
Q 005653 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~----~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (685)
..+.|||---++..-. +..|||+|-..-+.+.- ...|++|...+...++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik-----------as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK-----------ASVCHVCGAAYQEDDV 162 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh-----------hccccccCCcccccCe
Confidence 4688999775554322 56899999998876653 3699999997765554
No 109
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=66.75 E-value=6.6 Score=38.30 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=34.7
Q ss_pred CCCccccccCcCCCCcEEccCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 108 PLSVQCPICLEYPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGH-----iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
..+..|=||.+... +...+|.. ..+..|+.+|+.... ...|++|....
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~-------~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSK-------NKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCC-------CCcccccCCeE
Confidence 35678999997653 23346654 338899999998643 47999998855
No 110
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=65.63 E-value=6.1 Score=47.11 Aligned_cols=73 Identities=22% Similarity=0.459 Sum_probs=48.8
Q ss_pred CCccccccCc--CCCCcEEccCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEeeccccccC
Q 005653 109 LSVQCPICLE--YPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQHAV 181 (685)
Q Consensus 109 ~~~~CPICLe--~~~~P~~t~CGH-----iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~~~~~~~ 181 (685)
+..+|-||.. .+.+|..-+|.+ ..+..|++.|+.-+. ..+|-+|...+.-+++ |-++ .
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~-------~~kCdiChy~~~Fk~I---Y~e~-----m 75 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG-------TKKCDICHYEYKFKDI---YKED-----M 75 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC-------Ccceeeecceeeeeee---cccC-----C
Confidence 4478999994 466888777754 247899999998543 4899999887654443 3332 2
Q ss_pred CCceEEEEeecCCCC
Q 005653 182 GDTIEFMLLIREKDS 196 (685)
Q Consensus 182 g~~v~l~L~~R~~~S 196 (685)
-+.+-|.+++|.-.+
T Consensus 76 P~~IPfsiL~rk~a~ 90 (1175)
T COG5183 76 PQIIPFSILIRKVAD 90 (1175)
T ss_pred CcccceehhHHHHHH
Confidence 245556666665444
No 111
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=63.83 E-value=0.36 Score=40.58 Aligned_cols=40 Identities=30% Similarity=0.541 Sum_probs=22.3
Q ss_pred CccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
+..||.|..++.. . =||.+|..|-..|... ..||.|..++
T Consensus 1 e~~CP~C~~~L~~-~---~~~~~C~~C~~~~~~~----------a~CPdC~~~L 40 (70)
T PF07191_consen 1 ENTCPKCQQELEW-Q---GGHYHCEACQKDYKKE----------AFCPDCGQPL 40 (70)
T ss_dssp --B-SSS-SBEEE-E---TTEEEETTT--EEEEE----------EE-TTT-SB-
T ss_pred CCcCCCCCCccEE-e---CCEEECccccccceec----------ccCCCcccHH
Confidence 3579999986432 1 1899999998765543 6899998866
No 112
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.24 E-value=6 Score=41.95 Aligned_cols=43 Identities=16% Similarity=0.527 Sum_probs=30.0
Q ss_pred CCCcccHHHHHHHHHcCCCCC-C---CCCcCCCCCcccccCCCCcee
Q 005653 128 CGHIFCFPCILQYLLMGDEDY-K---GDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 128 CGHiFC~~CI~~~l~~~~~~~-k---~~~~~~CPlCr~~i~~~~L~~ 170 (685)
|....|..|+.+|+...+++. + -+....||+||+.+...|+.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~ 371 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHC 371 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeE
Confidence 566778899999998765431 0 113479999999887666543
No 113
>PHA02862 5L protein; Provisional
Probab=60.66 E-value=8.6 Score=36.92 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=33.5
Q ss_pred ccccccCcCCCCcEEccCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 111 VQCPICLEYPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 111 ~~CPICLe~~~~P~~t~CGH-----iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
..|=||.+.-... ..+|.. ..+..||.+|+.... ...|++|+.....
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~-------k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSK-------KKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCC-------CcCccCCCCeEEE
Confidence 4699999764332 455543 457899999997643 4799999987643
No 114
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.11 E-value=6.7 Score=38.75 Aligned_cols=56 Identities=27% Similarity=0.443 Sum_probs=36.0
Q ss_pred CCccccccCcCCCCcE-------EccCCCcccHHHHHHHHHcCCCCCC--CCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCPQ-------ITSCGHIFCFPCILQYLLMGDEDYK--GDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~-------~t~CGHiFC~~CI~~~l~~~~~~~k--~~~~~~CPlCr~~i~ 164 (685)
+-..|-||..+-.... -..||..|..-|+..|+..-..... ..-...||.|..++.
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 3467888886533222 2469999999999999975321100 011358999998764
No 115
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=56.56 E-value=6.2 Score=30.55 Aligned_cols=40 Identities=28% Similarity=0.687 Sum_probs=24.7
Q ss_pred ccccCcCC--CCcEEccCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 005653 113 CPICLEYP--LCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (685)
Q Consensus 113 CPICLe~~--~~P~~t~CGH-----iFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (685)
|-||++.- ..+.+.+|+- .....||.+|+.... ...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~-------~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG-------NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT--------SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC-------CCcCCCC
Confidence 67898643 2356777753 347889999998732 3679887
No 116
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=54.63 E-value=3.1 Score=44.59 Aligned_cols=57 Identities=21% Similarity=0.528 Sum_probs=36.0
Q ss_pred CCCCccccccCc-CCC--CcE--EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 107 NPLSVQCPICLE-YPL--CPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 107 ~~~~~~CPICLe-~~~--~P~--~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
..+...|.+|-- .|. .-+ .-.||++||.+|-..-+....- ..+.-+.|+.|+..+.+
T Consensus 165 D~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~--~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 165 DSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNL--STKPIRVCDICFEELEK 226 (288)
T ss_pred cccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCccccccc--CCCCceecHHHHHHHhc
Confidence 445788999997 443 122 4679999999996553322211 11123589999887654
No 117
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=53.97 E-value=6.4 Score=26.81 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=11.9
Q ss_pred cccccCcC-CCCcE-EccCCCcc
Q 005653 112 QCPICLEY-PLCPQ-ITSCGHIF 132 (685)
Q Consensus 112 ~CPICLe~-~~~P~-~t~CGHiF 132 (685)
.||-|... +.... ...|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 58888754 33333 23477766
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=53.62 E-value=16 Score=39.73 Aligned_cols=45 Identities=29% Similarity=0.491 Sum_probs=32.5
Q ss_pred CccccccCcCCCCcE----EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 110 SVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 110 ~~~CPICLe~~~~P~----~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
..+||||-+....-. -.+||+..|+.|+..-... ...||.|+.+.
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~---------~~~~~~~rk~~ 297 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG---------DGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhccccc---------CCCCCccCCcc
Confidence 468999998663221 3479999999998765542 47999999543
No 119
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=53.26 E-value=3.1 Score=44.98 Aligned_cols=43 Identities=21% Similarity=0.557 Sum_probs=32.0
Q ss_pred CccccccCcCCCCcEEcc----CC--CcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 110 SVQCPICLEYPLCPQITS----CG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~----CG--HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
...||||-..|+..++.. =| +.+|.-|-..|-.. ..+||.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~---------R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV---------RVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc---------CccCCCCCC
Confidence 458999999998766432 34 56689998888653 269999986
No 120
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=51.93 E-value=11 Score=34.47 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=33.3
Q ss_pred CCCCccccccCcCCCCcE--------EccC---CCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 107 NPLSVQCPICLEYPLCPQ--------ITSC---GHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~--------~t~C---GHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
......|-.|..--.... ...| .-.||..||..................||.|+..-
T Consensus 4 ~~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 4 SVNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred CCCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 334566777775322211 1345 66799999988776432111112347899998844
No 121
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=48.85 E-value=8.9 Score=40.14 Aligned_cols=44 Identities=32% Similarity=0.507 Sum_probs=36.1
Q ss_pred CCCccccccCcCCCCcEE-ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC
Q 005653 108 PLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL 158 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl 158 (685)
.-.+.|||-..+..+|++ ..|||+|=..-|+.++.-. ....||+
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~-------~~i~CPv 218 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE-------ITIRCPV 218 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC-------ceeeccc
Confidence 346899999999999995 6899999999999988641 2478887
No 122
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=46.67 E-value=29 Score=37.35 Aligned_cols=57 Identities=23% Similarity=0.600 Sum_probs=33.3
Q ss_pred CCCccccccCcC-CCC----------------cE--EccCCCcccHHHHHHHHHcCC-CCCCCCCcCCCCCcccccCC
Q 005653 108 PLSVQCPICLEY-PLC----------------PQ--ITSCGHIFCFPCILQYLLMGD-EDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 108 ~~~~~CPICLe~-~~~----------------P~--~t~CGHiFC~~CI~~~l~~~~-~~~k~~~~~~CPlCr~~i~~ 165 (685)
..+..||+|+.. +.- |. ..+|||+ |..=-..|+..-. ..+...-...||.|...+.-
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 347899999953 211 22 4589995 5555566665422 11111124689999887643
No 123
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.20 E-value=16 Score=43.41 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=39.2
Q ss_pred cccccCcCCCCcEEccCCC-cccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 112 QCPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 112 ~CPICLe~~~~P~~t~CGH-iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
.|+||-.-+.-...-.||| ..|..|.++..-... ..+....||+|+..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~---~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELN---NRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcc---cccccccCccccccee
Confidence 5999999888888899999 899999998776543 1123467899988554
No 124
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=42.68 E-value=8.4 Score=46.32 Aligned_cols=32 Identities=19% Similarity=0.478 Sum_probs=25.7
Q ss_pred CccccccCcCCCC--cEEccCCCcccHHHHHHHH
Q 005653 110 SVQCPICLEYPLC--PQITSCGHIFCFPCILQYL 141 (685)
Q Consensus 110 ~~~CPICLe~~~~--P~~t~CGHiFC~~CI~~~l 141 (685)
...|-.|.....+ =++..||+.+|..|+..|.
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 4579999976554 4478999999999999885
No 125
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.08 E-value=12 Score=41.77 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=24.9
Q ss_pred CccccccCcCCC-----CcEEccCCCcccHHHHHHHHHc
Q 005653 110 SVQCPICLEYPL-----CPQITSCGHIFCFPCILQYLLM 143 (685)
Q Consensus 110 ~~~CPICLe~~~-----~P~~t~CGHiFC~~CI~~~l~~ 143 (685)
-..||+|..... +-++-.|||-||+.|...|...
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~ 344 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH 344 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC
Confidence 467999986543 2333359999999999887654
No 126
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.08 E-value=19 Score=34.16 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=25.0
Q ss_pred cCCCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHc
Q 005653 105 YSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLM 143 (685)
Q Consensus 105 ~~~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~ 143 (685)
..+.++..|-||+..-.+ -.|||+ |.+|-+++...
T Consensus 60 aGv~ddatC~IC~KTKFA---DG~GH~-C~YCq~r~CAR 94 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFA---DGCGHN-CSYCQTRFCAR 94 (169)
T ss_pred cccCcCcchhhhhhcccc---cccCcc-cchhhhhHHHh
Confidence 345678899999965332 359995 89998776653
No 128
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=40.46 E-value=7.6 Score=42.03 Aligned_cols=44 Identities=20% Similarity=0.561 Sum_probs=32.2
Q ss_pred CCccccccCcCCCCcEEc---cCC--CcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 109 LSVQCPICLEYPLCPQIT---SCG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t---~CG--HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
....||||-..|+..++. .=| |.+|.-|-..|-.. ..+||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~---------R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV---------RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc---------CccCCCCCC
Confidence 357899999999877542 234 45688898887653 269999986
No 129
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=39.14 E-value=3.8 Score=43.81 Aligned_cols=44 Identities=23% Similarity=0.572 Sum_probs=22.3
Q ss_pred CccccccCcCCCCcEEccC---C--CcccHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 005653 110 SVQCPICLEYPLCPQITSC---G--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~C---G--HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (685)
...||||-..|...++..= | |.+|.-|-..|-.. ...||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~---------R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV---------RIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE-----------TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec---------CCCCcCCCCC
Confidence 4689999999887776543 3 67799998887543 2689999763
No 130
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=38.88 E-value=18 Score=43.10 Aligned_cols=55 Identities=29% Similarity=0.579 Sum_probs=39.1
Q ss_pred CccccccCcCCCCcE-EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCce
Q 005653 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (685)
Q Consensus 110 ~~~CPICLe~~~~P~-~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (685)
.+.||||..-+.-|. -..|.|+=|++-+. |+.... ++....||+|...+...+|.
T Consensus 306 SL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~----~~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNE----QKPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred EecCCcccceeecCCcccccccceecchhh-hHHhcc----CCCeeeCccCCccccccchh
Confidence 578999987666554 56899999988654 454432 22457899999887766654
No 131
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=38.07 E-value=11 Score=41.90 Aligned_cols=48 Identities=27% Similarity=0.582 Sum_probs=0.0
Q ss_pred CCccccccCcCCCCcE--------------EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 005653 109 LSVQCPICLEYPLCPQ--------------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~--------------~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (685)
...+||+=|..+.-|. .+.|||++-+- .|....+. +...+.||+|+..
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~---~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDR---DPRSRTCPLCRQV 337 (416)
T ss_dssp --------------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeec---cccccccc---ccccccCCCcccc
Confidence 4578999887654322 36799998663 34432221 1136899999873
No 132
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=37.18 E-value=21 Score=28.07 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=23.3
Q ss_pred ccccccCcCCCC----cEEccCCCcccHHHHHHHHH
Q 005653 111 VQCPICLEYPLC----PQITSCGHIFCFPCILQYLL 142 (685)
Q Consensus 111 ~~CPICLe~~~~----P~~t~CGHiFC~~CI~~~l~ 142 (685)
..|.+|...+.. .....||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 468899865542 22568999999999876654
No 133
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=35.76 E-value=19 Score=38.75 Aligned_cols=46 Identities=30% Similarity=0.752 Sum_probs=27.3
Q ss_pred CccccccCcCCCCcE--------------EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 110 SVQCPICLEYPLCPQ--------------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 110 ~~~CPICLe~~~~P~--------------~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
..+||+=|..+.-|. .+.|||+--+- .| +.....+.+..+||+|+.
T Consensus 290 RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H---~W---G~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 290 RPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH---NW---GVRENTGQRERECPMCRV 349 (429)
T ss_pred CCCCCcccceeecccccccccccccCCeEEEecccccccc---cc---ccccccCcccCcCCeeee
Confidence 468999887654332 36799975321 12 111122334689999976
No 134
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=35.41 E-value=14 Score=41.44 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=24.7
Q ss_pred CCCCccccccCcCCCCcE----EccCCCcccHHHHH
Q 005653 107 NPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCIL 138 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~----~t~CGHiFC~~CI~ 138 (685)
..+...||+|-..|.-.+ +.-||-+.|..|..
T Consensus 177 Ds~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k 212 (505)
T KOG1842|consen 177 DSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSK 212 (505)
T ss_pred CCcccccccccchhhhHHHhhhhhhcchHHHHHHHH
Confidence 445678999999886443 45699999999953
No 135
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=34.80 E-value=20 Score=36.63 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=35.2
Q ss_pred CccccccCcCCCCcE-EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 110 ~~~CPICLe~~~~P~-~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
-..|.+|....+..+ .-.||-.|..+|+..|+.. -..||.|....
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~---------~~~cphc~d~w 226 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR---------RDICPHCGDLW 226 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc---------cCcCCchhccc
Confidence 357999998766554 6778888999999999975 26899996543
No 136
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.71 E-value=30 Score=41.34 Aligned_cols=21 Identities=29% Similarity=0.814 Sum_probs=18.5
Q ss_pred EccCCCcccHHHHHHHHHcCC
Q 005653 125 ITSCGHIFCFPCILQYLLMGD 145 (685)
Q Consensus 125 ~t~CGHiFC~~CI~~~l~~~~ 145 (685)
+..|||+..-.|...|+..+.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd 1065 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGD 1065 (1081)
T ss_pred hccccccccHHHHHHHHhcCC
Confidence 457999999999999999865
No 137
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=32.93 E-value=24 Score=36.58 Aligned_cols=43 Identities=33% Similarity=0.618 Sum_probs=35.1
Q ss_pred CCccccccCcCCCCcEE-ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC
Q 005653 109 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL 158 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl 158 (685)
-+..|||-+.+...|.+ ++|.|.|=.+-|..+++.. ..+.||.
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~-------~trvcp~ 231 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVE-------CTRVCPR 231 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCC-------ceeecch
Confidence 46889999999999984 7899999999999998742 2467774
No 138
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=31.46 E-value=42 Score=37.81 Aligned_cols=54 Identities=30% Similarity=0.400 Sum_probs=46.3
Q ss_pred cccccCcCCCCcEE-ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEee
Q 005653 112 QCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIE 174 (685)
Q Consensus 112 ~CPICLe~~~~P~~-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~ 174 (685)
.|.|--+.|..|++ ..-||+|=..-|.+|+.. ..+||+-..++...+|.+|...
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e---------~G~DPIt~~pLs~eelV~Ik~~ 56 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE---------TGKDPITNEPLSIEELVEIKVP 56 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHH---------cCCCCCCCCcCCHHHeeecccc
Confidence 59999999999996 569999999999999985 3699999999988888776553
No 139
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=30.97 E-value=10 Score=31.30 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=16.4
Q ss_pred CCccccccCcCCCCc--E--EccCCCcccHHHHHHH
Q 005653 109 LSVQCPICLEYPLCP--Q--ITSCGHIFCFPCILQY 140 (685)
Q Consensus 109 ~~~~CPICLe~~~~P--~--~t~CGHiFC~~CI~~~ 140 (685)
+...|.+|...|.-- + ...||++||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 456899999887422 1 3579999999997543
No 140
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.15 E-value=24 Score=40.09 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=20.5
Q ss_pred ccccccCc---CCCCcEEccCCCcccHHHHHHHHH
Q 005653 111 VQCPICLE---YPLCPQITSCGHIFCFPCILQYLL 142 (685)
Q Consensus 111 ~~CPICLe---~~~~P~~t~CGHiFC~~CI~~~l~ 142 (685)
..|+.+.. ....++.-.|||.||+.|...|..
T Consensus 164 ~~C~~av~~~~~~~~~v~C~~g~~FC~~C~~~~H~ 198 (444)
T KOG1815|consen 164 PGCGLAVKFGSLESVEVDCGCGHEFCFACGEESHS 198 (444)
T ss_pred CCCCceeeccCCCccceeCCCCchhHhhccccccC
Confidence 34554443 233455678999999999766543
No 141
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=29.96 E-value=26 Score=41.84 Aligned_cols=26 Identities=38% Similarity=0.717 Sum_probs=17.4
Q ss_pred CCCCccccccCcCCCCcE----------EccCCCcc
Q 005653 107 NPLSVQCPICLEYPLCPQ----------ITSCGHIF 132 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~----------~t~CGHiF 132 (685)
.++...|+-||..+.+|. +|.||-.|
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRf 133 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRF 133 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcce
Confidence 445667999997665442 46777665
No 142
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=29.55 E-value=23 Score=39.19 Aligned_cols=34 Identities=26% Similarity=0.796 Sum_probs=24.4
Q ss_pred CccccccC-cCCCCcE-EccCCCcccHHHHHHHHHc
Q 005653 110 SVQCPICL-EYPLCPQ-ITSCGHIFCFPCILQYLLM 143 (685)
Q Consensus 110 ~~~CPICL-e~~~~P~-~t~CGHiFC~~CI~~~l~~ 143 (685)
..+||||+ .++.+-- ...|.-..|..|+..+-..
T Consensus 74 ~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~ 109 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNLVRCCSETICGECFAPFGCY 109 (482)
T ss_pred cccCceeeeecccccchhhhhccchhhhheecccCC
Confidence 36899999 4555433 5568889999998776443
No 143
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=29.15 E-value=21 Score=41.86 Aligned_cols=41 Identities=22% Similarity=0.515 Sum_probs=26.5
Q ss_pred CCccccccCc-CCCCcE-------EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 109 LSVQCPICLE-YPLCPQ-------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 109 ~~~~CPICLe-~~~~P~-------~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
..+.|.||.. .++=|- ...||++|+..|+.+ ....||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r------------~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR------------KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc------------cCCCCCchHH
Confidence 4577888863 222222 456999999999754 2355999943
No 144
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.11 E-value=90 Score=31.83 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005653 519 FIDEIRKREKQRKQLANKERKEKMKAEA 546 (685)
Q Consensus 519 F~~eL~kRrkrr~~K~~~E~k~r~~aE~ 546 (685)
..+|+++||+++..++..|++...++|-
T Consensus 166 lfae~erkRk~~e~r~~~eRkr~re~eI 193 (250)
T KOG1150|consen 166 LFAELERKRKELEARANEERKRQREEEI 193 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4568999999999888888775444443
No 145
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.08 E-value=15 Score=43.36 Aligned_cols=65 Identities=22% Similarity=0.467 Sum_probs=41.9
Q ss_pred CCCcCcCCCchhhhhhccCCCCCccccccCcCCCC----cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 88 SMDPDKMLQWEDIICVRYSNPLSVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 88 ~~dpd~~l~w~~i~qv~~~~~~~~~CPICLe~~~~----P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
..+..+..+|.| ...|-.|...|.. -.+..||-+||..|....+....- +-.+..+.|-.|.+.+
T Consensus 153 mf~~~~~pdW~D----------~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~-Gi~~~VRVCd~C~E~l 221 (634)
T KOG1818|consen 153 MFDAETAPDWID----------SEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKL-GIEKPVRVCDSCYELL 221 (634)
T ss_pred hhcccCCccccc----------ccccceeeeeeeeccccccccccchhhccCccccccCcccc-cccccceehhhhHHHh
Confidence 445566667733 4579999877642 225689999999998877765431 1111247788886654
No 146
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=29.03 E-value=18 Score=40.11 Aligned_cols=56 Identities=20% Similarity=0.449 Sum_probs=0.0
Q ss_pred CccccccCcC--CC---------------CcE--EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 110 SVQCPICLEY--PL---------------CPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 110 ~~~CPICLe~--~~---------------~P~--~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
...||+|+.. ++ .|. ..+|||+--.....-|-+..--.+...-...||.|..++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 6789999953 21 122 35799975555554444332111111123589999888753
No 147
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.89 E-value=83 Score=26.43 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=32.3
Q ss_pred cCCCceEEEEEecCCC-CCChhhHHhhHHHHHHHHHHH
Q 005653 494 FSLTTTFQLCEIDLTE-ALPPDALSPFIDEIRKREKQR 530 (685)
Q Consensus 494 LPlgce~~f~E~Dl~~-vVs~e~L~~F~~eL~kRrkrr 530 (685)
.|+|-.|-+=|+|=+. +|.+++++.-..||++++.++
T Consensus 27 m~~~skfii~eLDdthLfV~p~~vemvk~~le~~le~n 64 (71)
T KOG3451|consen 27 MQLGSKFIIEELDDTHLFVNPSIVEMVKNELERILENN 64 (71)
T ss_pred CCCCCCeeEEEeccceeeecHHHHHHHHHHHHHHHHhc
Confidence 4899999999999988 688999999999999887543
No 148
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=28.53 E-value=26 Score=27.67 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=21.5
Q ss_pred CccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
.+.||.|...+.. .-|...+...-.. ......||+|...+
T Consensus 2 ~f~CP~C~~~~~~------------~~L~~H~~~~H~~--~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSE------------SSLVEHCEDEHRS--ESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCH------------HHHHHHHHhHCcC--CCCCccCCCchhhh
Confidence 5689999884432 2333333322111 11247899997643
No 149
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.76 E-value=39 Score=28.73 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=26.1
Q ss_pred cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 123 PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 123 P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
.++-.=-|.||-.|....+. ..||.|...+....+++
T Consensus 22 A~ICtfEcTFCadCae~~l~-----------g~CPnCGGelv~RP~RP 58 (84)
T COG3813 22 ARICTFECTFCADCAENRLH-----------GLCPNCGGELVARPIRP 58 (84)
T ss_pred eeEEEEeeehhHhHHHHhhc-----------CcCCCCCchhhcCcCCh
Confidence 33433357899999886664 68999988776665544
No 150
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=27.65 E-value=39 Score=35.97 Aligned_cols=43 Identities=21% Similarity=0.604 Sum_probs=31.8
Q ss_pred CccccccCcCCCCcEEc----cCCCcc--cHHHHHHHHHcCCCCCCCCCcCCCCCccc
Q 005653 110 SVQCPICLEYPLCPQIT----SCGHIF--CFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t----~CGHiF--C~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (685)
..-||+|-..|++.++. .=|-.| |.-|...|.... .+|-.|..
T Consensus 185 ~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR---------~KC~nC~~ 233 (308)
T COG3058 185 RQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVR---------VKCSNCEQ 233 (308)
T ss_pred cccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHH---------HHhccccc
Confidence 34899999999987742 334444 899999998752 58999955
No 151
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.80 E-value=31 Score=32.49 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=21.5
Q ss_pred CCCchhhhhhccCCCCCccccccCcCCCCcEEccCCCcccHH
Q 005653 94 MLQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFP 135 (685)
Q Consensus 94 ~l~w~~i~qv~~~~~~~~~CPICLe~~~~P~~t~CGHiFC~~ 135 (685)
.++|+|-+-+.. .-.--||.+.-..-....|||.||.+
T Consensus 45 rv~~~dpillpv----g~hlfi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 45 RVDWDDPILLPV----GDHLFICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred hcccCCCeeeec----CCcEEEEecccccEEEEeccccccCh
Confidence 456766543221 22233666654443356899999975
No 152
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=26.70 E-value=57 Score=26.45 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=28.4
Q ss_pred ccccccCcCC-C-C--cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCC
Q 005653 111 VQCPICLEYP-L-C--PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (685)
Q Consensus 111 ~~CPICLe~~-~-~--P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (685)
..|-.|-..+ . . ..+-.=-..||..|....+. ..||.|...+..+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~-----------~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN-----------GVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc-----------CcCcCCCCccccC
Confidence 3466666432 2 2 23322234799999988774 5899998876544
No 153
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=26.57 E-value=17 Score=41.06 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=21.4
Q ss_pred CCccccccCcCCCCcE----EccCCCcccHHHH
Q 005653 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCI 137 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~----~t~CGHiFC~~CI 137 (685)
+...|-.|..+|.+-+ +..||-+||..|-
T Consensus 900 ~a~~cmacq~pf~afrrrhhcrncggifcg~cs 932 (990)
T KOG1819|consen 900 DAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCS 932 (990)
T ss_pred cchhhhhccCcHHHHHHhhhhcccCceeecccc
Confidence 3467888887776433 5789999999883
No 154
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=13 Score=39.57 Aligned_cols=44 Identities=34% Similarity=0.638 Sum_probs=33.9
Q ss_pred ccccccCcCCC------CcEEcc--------CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 005653 111 VQCPICLEYPL------CPQITS--------CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (685)
Q Consensus 111 ~~CPICLe~~~------~P~~t~--------CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (685)
..|.||...+. .|++.. |||..|..|+...+... ...||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~--------~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA--------GIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh--------hhcCCcccce
Confidence 55899985443 566666 99999999999988752 2799999763
No 155
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=25.63 E-value=5.9 Score=35.68 Aligned_cols=47 Identities=28% Similarity=0.594 Sum_probs=15.9
Q ss_pred ccccccCcCC--CCcEEccC--CCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 111 VQCPICLEYP--LCPQITSC--GHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 111 ~~CPICLe~~--~~P~~t~C--GHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
..|+||...+ .++....| ||+| ..|-+.++....- ..+.|++|...+
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w-~RC~lT~l~i~~~-----~~r~C~~C~~~~ 65 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVW-PRCALTFLPIQTP-----GVRVCPVCGRRA 65 (99)
T ss_dssp --------------SSEEE-TTS-EE-EB-SSS-SBS-SS------EEE-TTT--EE
T ss_pred ccccccccccccCCcCEeECCCCCEE-eeeeeeeeeeccC-----CeeEcCCCCCEE
Confidence 5799999754 45555666 7886 4566666654331 247899997643
No 156
>PRK04023 DNA polymerase II large subunit; Validated
Probab=25.36 E-value=47 Score=41.24 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=38.5
Q ss_pred CCccccccCcCCCCcEEccCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEee
Q 005653 109 LSVQCPICLEYPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIE 174 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGH-----iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~ 174 (685)
....||=|-.......+..||. .||..|-.. . ....||.|...+....-+.|-+.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~----~-------~~y~CPKCG~El~~~s~~~i~l~ 684 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE----V-------EEDECEKCGREPTPYSKRKIDLK 684 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc----C-------CCCcCCCCCCCCCccceEEecHH
Confidence 4678999998766666778984 599999211 0 12579999988876665555443
No 157
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.32 E-value=99 Score=37.35 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=10.7
Q ss_pred hhHHhhHHHHHHHHHH
Q 005653 514 DALSPFIDEIRKREKQ 529 (685)
Q Consensus 514 e~L~~F~~eL~kRrkr 529 (685)
|-|+.=..||+|||+.
T Consensus 320 eNy~kGqaELerRRq~ 335 (1118)
T KOG1029|consen 320 ENYEKGQAELERRRQA 335 (1118)
T ss_pred HhHhhhhHHHHHHHHH
Confidence 4455666788888764
No 158
>PF15616 TerY-C: TerY-C metal binding domain
Probab=24.90 E-value=40 Score=32.03 Aligned_cols=40 Identities=28% Similarity=0.566 Sum_probs=28.7
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
....||-|-...--.+. .||++||+. +. ....||-|....
T Consensus 76 g~PgCP~CGn~~~fa~C-~CGkl~Ci~--------g~------~~~~CPwCg~~g 115 (131)
T PF15616_consen 76 GAPGCPHCGNQYAFAVC-GCGKLFCID--------GE------GEVTCPWCGNEG 115 (131)
T ss_pred CCCCCCCCcChhcEEEe-cCCCEEEeC--------CC------CCEECCCCCCee
Confidence 34789999986544444 899999983 11 248999998754
No 159
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.54 E-value=24 Score=34.52 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=17.2
Q ss_pred CCCccccccCcCCCCcE---EccCCCccc
Q 005653 108 PLSVQCPICLEYPLCPQ---ITSCGHIFC 133 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~---~t~CGHiFC 133 (685)
.+.-+|.|||+.+..-- .++|-+||.
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEee
Confidence 34578999998776433 357776664
No 160
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=7.9 Score=42.66 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=38.2
Q ss_pred CccccccCcCCCCc----EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCC
Q 005653 110 SVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (685)
Q Consensus 110 ~~~CPICLe~~~~P----~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (685)
.-+|.||...+..- ..+.|||++...||..|+.. ..+||.|+..+....
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~---------~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT---------KRKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH---------HHHhHHHHhhhhhhh
Confidence 35799998765432 25789999999999999986 269999998876543
No 161
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=22.37 E-value=34 Score=35.44 Aligned_cols=12 Identities=17% Similarity=0.578 Sum_probs=9.5
Q ss_pred CcCCCCCccccc
Q 005653 152 CFKRCPLCFVMI 163 (685)
Q Consensus 152 ~~~~CPlCr~~i 163 (685)
+.++|-+|...+
T Consensus 33 khfkchichkkl 44 (341)
T KOG2893|consen 33 KHFKCHICHKKL 44 (341)
T ss_pred ccceeeeehhhh
Confidence 469999997755
No 162
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=1.3e+02 Score=33.63 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=52.2
Q ss_pred ccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEeeccccccCCCceEEEEe
Q 005653 111 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQHAVGDTIEFMLL 190 (685)
Q Consensus 111 ~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~~~~~~~g~~v~l~L~ 190 (685)
..|.+-+-++..|+++.-|-+|=+.-|+.|+.. ..+=|+-.+.+..++|..+.+..-..-.-...|.|...
T Consensus 41 ~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk---------~g~nP~tG~kl~~~dLIkL~F~Kns~geyhcPvlfk~F 111 (518)
T KOG0883|consen 41 NHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK---------HGTNPITGQKLDGKDLIKLKFHKNSEGEYHCPVLFKVF 111 (518)
T ss_pred hhceeccccccCcccccCCcEEeeehhhHHHHH---------cCCCCCCCCccccccceeeeeccCCCCcccCceeeeee
Confidence 468888889999999999999999999999984 34557777778888887776653222112234555554
Q ss_pred ec
Q 005653 191 IR 192 (685)
Q Consensus 191 ~R 192 (685)
.+
T Consensus 112 T~ 113 (518)
T KOG0883|consen 112 TR 113 (518)
T ss_pred cc
Confidence 44
No 163
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.85 E-value=33 Score=38.31 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=23.1
Q ss_pred CCccccccCcCCCCc------EEccCCCcccHHHHHH
Q 005653 109 LSVQCPICLEYPLCP------QITSCGHIFCFPCILQ 139 (685)
Q Consensus 109 ~~~~CPICLe~~~~P------~~t~CGHiFC~~CI~~ 139 (685)
....||-|.-+.... ..+.|||.|||-|-..
T Consensus 367 N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~ 403 (445)
T KOG1814|consen 367 NSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAEL 403 (445)
T ss_pred cCCCCCcccceeecCCCccceeeccccccceeehhhh
Confidence 467899999765422 2589999999999643
No 164
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=21.52 E-value=43 Score=40.24 Aligned_cols=32 Identities=28% Similarity=0.552 Sum_probs=24.1
Q ss_pred ccccccCcCCCC-------cE--EccCCCcccHHHHHHHHH
Q 005653 111 VQCPICLEYPLC-------PQ--ITSCGHIFCFPCILQYLL 142 (685)
Q Consensus 111 ~~CPICLe~~~~-------P~--~t~CGHiFC~~CI~~~l~ 142 (685)
..|..|...+.. -+ +-.||.+||-.|-.....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~ 501 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAH 501 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCccc
Confidence 579999988742 11 568999999999865543
No 165
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=21.00 E-value=51 Score=26.22 Aligned_cols=26 Identities=27% Similarity=0.853 Sum_probs=14.4
Q ss_pred ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcc
Q 005653 126 TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (685)
Q Consensus 126 t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (685)
..|++.||+.|=+ |+.. .-..||-|.
T Consensus 25 ~~C~~~FC~dCD~-fiHE--------~LH~CPGC~ 50 (51)
T PF07975_consen 25 PKCKNHFCIDCDV-FIHE--------TLHNCPGCE 50 (51)
T ss_dssp TTTT--B-HHHHH-TTTT--------TS-SSSTT-
T ss_pred CCCCCccccCcCh-hhhc--------cccCCcCCC
Confidence 5799999999954 3222 247899884
No 166
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=24 Score=39.99 Aligned_cols=48 Identities=31% Similarity=0.551 Sum_probs=35.8
Q ss_pred cCCCCCcccccc-CcCCCCcEEc--cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 005653 105 YSNPLSVQCPIC-LEYPLCPQIT--SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (685)
Q Consensus 105 ~~~~~~~~CPIC-Le~~~~P~~t--~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (685)
...++...|++| ...+....++ -|.-+||..||...+.. +.|+.|...
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~----------~~~~~c~~~ 264 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS----------KSMCVCGAS 264 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc----------ccCCcchhh
Confidence 345678999999 6777776655 58899999999887754 566666543
No 167
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.85 E-value=79 Score=29.27 Aligned_cols=41 Identities=24% Similarity=0.490 Sum_probs=28.7
Q ss_pred ccccccCcCCCCc--------------EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcc
Q 005653 111 VQCPICLEYPLCP--------------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (685)
Q Consensus 111 ~~CPICLe~~~~P--------------~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (685)
..|--|+..+..+ ....|++.||.+|=.-.... -..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~---------Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES---------LHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh---------ccCCcCCC
Confidence 4598998766533 14679999999996543332 36899985
No 168
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=20.55 E-value=1.5e+02 Score=25.74 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=11.4
Q ss_pred ChhhHHhhHHHHHHHHHHHHHH
Q 005653 512 PPDALSPFIDEIRKREKQRKQL 533 (685)
Q Consensus 512 s~e~L~~F~~eL~kRrkrr~~K 533 (685)
.++.|+.|..++++++.+|..+
T Consensus 50 ~~~ele~~~~~~~~k~~~rl~~ 71 (80)
T PF09803_consen 50 IREELEEFKEELRKKREERLLR 71 (80)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666664444433333
Done!