Query 005653
Match_columns 685
No_of_seqs 363 out of 1634
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 03:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.2 1.5E-11 5.2E-16 103.4 5.5 56 107-170 5-60 (78)
2 3ng2_A RNF4, snurf, ring finge 99.2 1.1E-11 3.7E-16 102.0 3.0 58 107-173 7-71 (71)
3 1g25_A CDK-activating kinase a 99.1 2E-11 6.7E-16 99.2 4.3 57 109-173 2-63 (65)
4 2ysl_A Tripartite motif-contai 99.1 3.2E-11 1.1E-15 99.8 5.1 56 107-168 17-72 (73)
5 2ecy_A TNF receptor-associated 99.1 2.4E-11 8.1E-16 99.0 4.2 53 108-168 13-65 (66)
6 2xeu_A Ring finger protein 4; 99.1 2.2E-11 7.6E-16 97.9 2.8 56 109-173 2-64 (64)
7 3lrq_A E3 ubiquitin-protein li 99.1 3.2E-11 1.1E-15 106.8 4.0 55 109-171 21-76 (100)
8 1jm7_A BRCA1, breast cancer ty 99.1 2.2E-11 7.4E-16 109.2 2.3 69 95-169 6-74 (112)
9 2djb_A Polycomb group ring fin 99.1 8.3E-11 2.8E-15 97.5 5.4 53 109-170 14-67 (72)
10 2kr4_A Ubiquitin conjugation f 99.1 8.2E-11 2.8E-15 101.2 5.3 55 107-170 11-65 (85)
11 3ztg_A E3 ubiquitin-protein li 99.1 9.7E-11 3.3E-15 101.5 5.8 56 108-170 11-68 (92)
12 2ct2_A Tripartite motif protei 99.1 1.2E-10 4E-15 99.8 5.7 57 108-170 13-73 (88)
13 2yur_A Retinoblastoma-binding 99.1 9.4E-11 3.2E-15 97.9 4.7 51 108-165 13-64 (74)
14 2kre_A Ubiquitin conjugation f 99.1 9.5E-11 3.2E-15 104.0 4.8 56 107-171 26-81 (100)
15 2ecw_A Tripartite motif-contai 99.1 1.8E-10 6E-15 97.7 6.3 60 108-170 17-76 (85)
16 3fl2_A E3 ubiquitin-protein li 99.0 1.3E-10 4.6E-15 106.4 5.1 52 109-168 51-103 (124)
17 2ysj_A Tripartite motif-contai 99.0 2.2E-10 7.5E-15 92.3 5.7 47 107-159 17-63 (63)
18 2csy_A Zinc finger protein 183 99.0 2.2E-10 7.5E-15 97.1 5.7 47 109-164 14-60 (81)
19 2y43_A E3 ubiquitin-protein li 99.0 7.6E-11 2.6E-15 103.8 2.8 54 108-170 20-74 (99)
20 1wgm_A Ubiquitin conjugation f 99.0 1.9E-10 6.7E-15 101.6 5.2 56 107-171 19-75 (98)
21 2egp_A Tripartite motif-contai 99.0 4.6E-11 1.6E-15 100.3 1.1 61 108-170 10-70 (79)
22 2d8t_A Dactylidin, ring finger 99.0 5.9E-11 2E-15 98.1 1.5 51 109-168 14-64 (71)
23 4ayc_A E3 ubiquitin-protein li 99.0 1.3E-10 4.3E-15 108.8 3.4 47 109-164 52-98 (138)
24 2ecv_A Tripartite motif-contai 99.0 2.7E-10 9.4E-15 96.5 5.0 60 108-170 17-76 (85)
25 1z6u_A NP95-like ring finger p 99.0 3.4E-10 1.1E-14 107.7 5.2 50 109-166 77-126 (150)
26 2c2l_A CHIP, carboxy terminus 99.0 2.7E-10 9.1E-15 117.5 4.4 56 107-170 205-260 (281)
27 2ea6_A Ring finger protein 4; 99.0 2.6E-10 9E-15 92.9 3.3 49 108-165 13-68 (69)
28 1jm7_B BARD1, BRCA1-associated 98.9 8E-11 2.7E-15 107.0 -0.0 69 90-169 2-71 (117)
29 2yu4_A E3 SUMO-protein ligase 98.9 4.8E-10 1.6E-14 98.1 4.6 61 107-170 4-68 (94)
30 2ckl_B Ubiquitin ligase protei 98.9 1.7E-10 5.7E-15 111.1 1.6 49 109-165 53-102 (165)
31 3hct_A TNF receptor-associated 98.9 4.4E-10 1.5E-14 102.2 4.2 56 107-170 15-70 (118)
32 2ecj_A Tripartite motif-contai 98.9 6.2E-10 2.1E-14 87.7 4.3 46 108-159 13-58 (58)
33 2f42_A STIP1 homology and U-bo 98.9 6.4E-10 2.2E-14 108.5 4.9 57 106-170 102-158 (179)
34 2ckl_A Polycomb group ring fin 98.9 6.5E-10 2.2E-14 99.4 4.5 49 109-166 14-63 (108)
35 2ect_A Ring finger protein 126 98.9 6.5E-10 2.2E-14 93.3 3.7 53 109-170 14-69 (78)
36 1rmd_A RAG1; V(D)J recombinati 98.9 9.4E-10 3.2E-14 99.5 4.5 54 109-170 22-75 (116)
37 2ecm_A Ring finger and CHY zin 98.9 1.4E-09 4.8E-14 84.8 4.2 47 109-164 4-54 (55)
38 4ap4_A E3 ubiquitin ligase RNF 98.8 8.1E-10 2.8E-14 101.3 3.0 57 108-173 5-68 (133)
39 3l11_A E3 ubiquitin-protein li 98.8 4E-10 1.4E-14 101.9 0.6 48 109-164 14-61 (115)
40 1e4u_A Transcriptional repress 98.8 1.7E-09 5.9E-14 91.5 4.5 54 107-168 8-65 (78)
41 1chc_A Equine herpes virus-1 r 98.8 1.7E-09 5.7E-14 88.3 3.9 47 109-164 4-51 (68)
42 3htk_C E3 SUMO-protein ligase 98.8 1.4E-09 4.9E-14 111.2 4.1 58 106-170 177-237 (267)
43 2kiz_A E3 ubiquitin-protein li 98.8 3.1E-09 1E-13 87.0 5.4 48 109-165 13-63 (69)
44 1v87_A Deltex protein 2; ring- 98.8 2.6E-09 8.9E-14 96.2 5.2 53 109-165 24-94 (114)
45 3knv_A TNF receptor-associated 98.8 1E-09 3.5E-14 103.2 2.5 52 107-166 28-79 (141)
46 2ecn_A Ring finger protein 141 98.8 8.4E-10 2.9E-14 90.6 1.4 50 108-167 13-62 (70)
47 2l0b_A E3 ubiquitin-protein li 98.8 2.1E-09 7.3E-14 93.3 3.9 48 109-165 39-89 (91)
48 1x4j_A Ring finger protein 38; 98.8 1.9E-09 6.4E-14 89.9 3.1 49 108-165 21-72 (75)
49 1iym_A EL5; ring-H2 finger, ub 98.8 2.8E-09 9.6E-14 83.2 3.3 47 108-163 3-53 (55)
50 2ep4_A Ring finger protein 24; 98.8 3.8E-09 1.3E-13 87.6 4.0 49 108-165 13-64 (74)
51 4ap4_A E3 ubiquitin ligase RNF 98.8 2.3E-09 7.8E-14 98.3 2.8 58 107-173 69-133 (133)
52 3hcs_A TNF receptor-associated 98.7 5.2E-09 1.8E-13 101.0 4.2 56 107-170 15-70 (170)
53 1bor_A Transcription factor PM 98.7 2.8E-09 9.4E-14 84.2 1.2 45 109-165 5-49 (56)
54 2y1n_A E3 ubiquitin-protein li 98.7 6.5E-09 2.2E-13 112.4 3.9 51 109-167 331-381 (389)
55 2bay_A PRE-mRNA splicing facto 98.6 1.3E-08 4.5E-13 82.0 3.5 55 110-173 3-58 (61)
56 2ecl_A Ring-box protein 2; RNF 98.6 2.3E-08 7.9E-13 84.9 3.2 48 109-165 14-76 (81)
57 2vje_A E3 ubiquitin-protein li 98.6 3.7E-08 1.3E-12 79.9 3.9 47 109-164 7-56 (64)
58 4ic3_A E3 ubiquitin-protein li 98.5 4.9E-08 1.7E-12 81.5 3.5 43 109-164 23-66 (74)
59 2vje_B MDM4 protein; proto-onc 98.5 7.6E-08 2.6E-12 77.9 4.0 46 110-164 7-55 (63)
60 2ecg_A Baculoviral IAP repeat- 98.5 7.4E-08 2.5E-12 80.4 4.0 44 109-165 24-68 (75)
61 1wim_A KIAA0161 protein; ring 98.4 2.9E-08 9.9E-13 86.5 -1.1 61 108-169 3-70 (94)
62 3dpl_R Ring-box protein 1; ubi 98.4 2.1E-07 7.1E-12 83.3 4.1 47 109-164 36-100 (106)
63 2ea5_A Cell growth regulator w 98.3 3.6E-07 1.2E-11 75.1 4.2 44 109-165 14-58 (68)
64 2yho_A E3 ubiquitin-protein li 98.3 3.7E-07 1.3E-11 77.2 3.4 44 109-165 17-61 (79)
65 3t6p_A Baculoviral IAP repeat- 98.1 4.3E-07 1.5E-11 97.4 0.8 43 109-164 294-337 (345)
66 4a0k_B E3 ubiquitin-protein li 98.1 3.1E-07 1.1E-11 83.5 -0.3 46 110-164 48-111 (117)
67 2d8s_A Cellular modulator of i 98.0 4E-06 1.4E-10 71.1 4.3 51 108-165 13-70 (80)
68 3vk6_A E3 ubiquitin-protein li 97.6 3.1E-05 1E-09 67.7 3.9 45 112-164 3-48 (101)
69 2ct0_A Non-SMC element 1 homol 97.5 9.1E-05 3.1E-09 61.8 4.8 48 110-164 15-63 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.1 0.00036 1.2E-08 55.7 3.7 50 108-164 4-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.0 0.00012 4.2E-09 77.3 0.8 56 109-164 307-372 (381)
72 2jun_A Midline-1; B-BOX, TRIM, 94.3 0.022 7.4E-07 49.5 2.8 33 109-141 2-37 (101)
73 3nw0_A Non-structural maintena 93.5 0.051 1.8E-06 55.0 4.4 49 109-164 179-228 (238)
74 3m62_A Ubiquitin conjugation f 90.0 0.2 6.9E-06 59.7 4.6 57 105-170 886-943 (968)
75 2cs3_A Protein C14ORF4, MY039 87.5 0.26 9E-06 41.1 2.3 36 109-144 14-53 (93)
76 2ko5_A Ring finger protein Z; 86.1 0.33 1.1E-05 41.8 2.3 47 109-165 27-73 (99)
77 3i2d_A E3 SUMO-protein ligase 84.3 0.76 2.6E-05 49.2 4.5 53 110-169 249-304 (371)
78 4fo9_A E3 SUMO-protein ligase 81.0 1.2 4.1E-05 47.5 4.5 53 110-169 215-270 (360)
79 3mpx_A FYVE, rhogef and PH dom 67.6 1.1 3.8E-05 48.5 0.0 54 109-164 374-431 (434)
80 1z2q_A LM5-1; membrane protein 55.9 5.6 0.00019 33.3 2.3 56 108-164 19-78 (84)
81 1joc_A EEA1, early endosomal a 54.2 3.3 0.00011 37.5 0.6 30 110-139 69-102 (125)
82 1x4u_A Zinc finger, FYVE domai 52.4 6.2 0.00021 33.0 2.0 32 107-138 11-46 (84)
83 1wfk_A Zinc finger, FYVE domai 52.1 4.6 0.00016 34.3 1.2 32 108-139 7-42 (88)
84 2yw8_A RUN and FYVE domain-con 51.4 5.4 0.00019 33.2 1.5 54 107-163 16-73 (82)
85 1dvp_A HRS, hepatocyte growth 46.1 5.2 0.00018 39.5 0.6 29 111-139 162-194 (220)
86 3t7l_A Zinc finger FYVE domain 44.7 8.5 0.00029 32.7 1.7 32 109-140 19-54 (90)
87 3zyq_A Hepatocyte growth facto 44.4 8.6 0.00029 38.2 1.9 52 111-163 165-220 (226)
88 1y02_A CARP2, FYVE-ring finger 43.5 6.6 0.00023 35.4 0.8 30 110-139 19-52 (120)
89 1vfy_A Phosphatidylinositol-3- 39.7 8.9 0.0003 31.2 1.0 28 111-138 12-43 (73)
90 3mjh_B Early endosome antigen 38.5 5.5 0.00019 27.9 -0.4 17 108-124 3-19 (34)
91 1wd2_A Ariadne-1 protein homol 36.7 4.8 0.00016 31.7 -1.1 33 110-142 6-46 (60)
92 1z60_A TFIIH basal transcripti 31.7 19 0.00065 28.3 1.7 40 111-159 16-58 (59)
93 2fiy_A Protein FDHE homolog; F 31.6 3.2 0.00011 43.5 -3.7 45 109-162 181-231 (309)
94 1wil_A KIAA1045 protein; ring 31.3 51 0.0017 27.8 4.2 54 107-160 12-74 (89)
95 2rgt_A Fusion of LIM/homeobox 29.9 46 0.0016 30.9 4.3 48 109-167 32-79 (169)
96 3vth_A Hydrogenase maturation 28.6 18 0.00063 42.3 1.6 56 107-163 108-193 (761)
97 1m3v_A FLIN4, fusion of the LI 27.5 27 0.00094 30.7 2.2 49 110-167 32-83 (122)
98 2jne_A Hypothetical protein YF 27.0 2.4 8.3E-05 36.7 -4.6 40 110-163 32-71 (101)
99 2lri_C Autoimmune regulator; Z 26.7 51 0.0018 26.2 3.4 49 109-162 11-59 (66)
100 4g9i_A Hydrogenase maturation 26.3 25 0.00086 41.2 2.1 56 107-163 103-188 (772)
101 2xqn_T Testin, TESS; metal-bin 23.6 51 0.0018 28.8 3.2 47 109-166 29-76 (126)
102 2d8v_A Zinc finger FYVE domain 23.5 39 0.0013 27.2 2.1 31 110-141 8-39 (67)
103 2jtn_A LIM domain-binding prot 23.4 43 0.0015 31.5 2.9 49 108-167 85-133 (182)
104 3ttc_A HYPF, transcriptional r 21.2 36 0.0012 39.2 2.0 57 106-163 13-99 (657)
105 2ct7_A Ring finger protein 31; 21.1 40 0.0014 28.0 1.9 14 127-140 48-61 (86)
106 2lbm_A Transcriptional regulat 20.2 59 0.002 30.0 2.9 46 110-161 63-116 (142)
107 1weo_A Cellulose synthase, cat 20.1 1.5E+02 0.0052 25.2 5.1 47 109-163 15-68 (93)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.18 E-value=1.5e-11 Score=103.36 Aligned_cols=56 Identities=30% Similarity=0.437 Sum_probs=48.9
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
.++.+.||||++.+.+|++++|||+||..||.+|+..+ ...||+|+..+...++.+
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~--------~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG--------HKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT--------CCBCTTTCCBCSSCCCEE
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC--------cCCCCCCcCCCChhhCcc
Confidence 45688999999999999999999999999999999742 378999999988776654
No 2
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.15 E-value=1.1e-11 Score=102.03 Aligned_cols=58 Identities=34% Similarity=0.642 Sum_probs=50.2
Q ss_pred CCCCccccccCcCCCCc-------EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEe
Q 005653 107 NPLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P-------~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (685)
..+...|+||++.+..| ++++|||+||..||..|+.. ...||+||..+...+++++++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc---------CCCCCCCCCccChhheeeccC
Confidence 34578999999998877 88999999999999999975 269999999999988887653
No 3
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=2e-11 Score=99.21 Aligned_cols=57 Identities=23% Similarity=0.523 Sum_probs=48.0
Q ss_pred CCccccccCc-CCCCc----EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEe
Q 005653 109 LSVQCPICLE-YPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (685)
Q Consensus 109 ~~~~CPICLe-~~~~P----~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (685)
++..||||++ .+.+| ++++|||+||..||.+|+... ...||+|+..+...+++++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--------AGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT--------SSSCTTTCCCCSSCCCEEECC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC--------CCcCCCCCCccccccceeecc
Confidence 4678999999 77777 468999999999999998742 368999999999998887654
No 4
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.2e-11 Score=99.84 Aligned_cols=56 Identities=36% Similarity=0.730 Sum_probs=47.3
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCc
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (685)
..+.+.||||++.+..|++++|||.||..||..|+.... ....||+|+..+...++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC------GFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC------SCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC------CCCCCCCCCCcCCcccC
Confidence 346789999999999999999999999999999986321 24799999998877665
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.4e-11 Score=99.01 Aligned_cols=53 Identities=26% Similarity=0.558 Sum_probs=46.3
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCc
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (685)
.+.+.||||++.+..|+++.|||+||..||.+|+.. ....||+|+..+..+++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS--------SSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT--------SSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh--------CcCCCCCCCcCCChhhc
Confidence 457899999999999999999999999999999963 23789999999887665
No 6
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.10 E-value=2.2e-11 Score=97.90 Aligned_cols=56 Identities=36% Similarity=0.670 Sum_probs=48.7
Q ss_pred CCccccccCcCCCCc-------EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEe
Q 005653 109 LSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (685)
Q Consensus 109 ~~~~CPICLe~~~~P-------~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (685)
+...|+||++.+..+ ++++|||+||..||.+|+.. ...||+|+..+...++.++++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---------CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---------CCCCCCCCccCCccceeeeeC
Confidence 457899999998776 78999999999999999985 269999999999998887653
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.10 E-value=3.2e-11 Score=106.77 Aligned_cols=55 Identities=27% Similarity=0.652 Sum_probs=48.5
Q ss_pred CCccccccCcCCCCcEE-ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceee
Q 005653 109 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (685)
+.+.|+||++.+..|++ +.|||+||..||..|+.... ..||+||..+...+|...
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR--------AQCPHCRAPLQLRELVNC 76 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC--------SBCTTTCCBCCGGGCEEC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc--------CCCCCCCCcCCHHHhHhh
Confidence 57899999999999999 99999999999999998632 689999999987777653
No 8
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=2.2e-11 Score=109.24 Aligned_cols=69 Identities=36% Similarity=0.640 Sum_probs=53.1
Q ss_pred CCchhhhhhccCCCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCce
Q 005653 95 LQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (685)
Q Consensus 95 l~w~~i~qv~~~~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (685)
+.|+.+..+.....+.+.||||++.+..|++++|||.||..||..|+.... ....||+|+..+...++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 6 LRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK------GPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp SSHHHHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS------SSCCCTTTSCCCCTTTCB
T ss_pred HHHHHHHHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC------CCCCCcCCCCcCCHhhcC
Confidence 455655444333445789999999999999999999999999999998632 236899999987665443
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=8.3e-11 Score=97.51 Aligned_cols=53 Identities=26% Similarity=0.689 Sum_probs=46.5
Q ss_pred CCccccccCcCCCCcEEc-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
+.+.|+||++.+.+|+++ .|||+||..||..|+.. ...||+|+..+...++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY---------SNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH---------CSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc---------CCcCCCcCcccCcccccc
Confidence 467899999999999986 99999999999999975 269999999998777654
No 10
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.08 E-value=8.2e-11 Score=101.23 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=49.4
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
.++.+.||||++.+.+|++++|||+||..||..|+.. ...||+|+..+...+|.+
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN---------SPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCCBCCGGGCEE
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhc---------CCCCCCCcCCCChHhcch
Confidence 4678999999999999999999999999999999984 268999999998777765
No 11
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.08 E-value=9.7e-11 Score=101.53 Aligned_cols=56 Identities=30% Similarity=0.595 Sum_probs=46.6
Q ss_pred CCCccccccCcCCCCcEEcc-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc-CCCCcee
Q 005653 108 PLSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI-SSKELYT 170 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~-CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i-~~~~L~~ 170 (685)
.+.+.||||++.+.+|++++ |||.||..||..|+.... ...||+|+..+ ...++.+
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-------~~~CP~Cr~~~~~~~~~~~ 68 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-------EHTCPTCHQNDVSPDALIA 68 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT-------TCCCTTTCCSSCCTTSCEE
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC-------CCcCcCCCCcCCCccccCc
Confidence 46789999999999999999 999999999999997532 37999999987 4444443
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=99.80 Aligned_cols=57 Identities=30% Similarity=0.645 Sum_probs=47.9
Q ss_pred CCCccccccCcCCCC----cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 108 PLSVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 108 ~~~~~CPICLe~~~~----P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
.+.+.|+||++.+.. |++++|||.||..||..|+.... ....||+|+..+...++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~i~~ 73 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI------NGVRCPFCSKITRITSLTQ 73 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS------SCBCCTTTCCCBCCSSTTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC------CCcCCCCCCCcccchhHHH
Confidence 356889999999988 99999999999999999998642 2479999999887766543
No 13
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.06 E-value=9.4e-11 Score=97.85 Aligned_cols=51 Identities=31% Similarity=0.615 Sum_probs=43.9
Q ss_pred CCCccccccCcCCCCcEEcc-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 108 PLSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~-CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
.+.+.||||++.+..|++++ |||+||..||..|+.... ...||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-------~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-------EHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS-------SSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC-------CCcCCCCCCcCCC
Confidence 35689999999999999999 999999999999998532 3699999997543
No 14
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.05 E-value=9.5e-11 Score=103.98 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=50.2
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceee
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (685)
.++.+.||||++.+.+|++++|||+||..||..|+.. ...||+|+.++...+|.+.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN---------SPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS---------CSBCSSSCCBCCTTSSEEC
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc---------CCCCCCCCCCCChhhceEC
Confidence 4678999999999999999999999999999999973 2689999999988888763
No 15
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.05 E-value=1.8e-10 Score=97.67 Aligned_cols=60 Identities=33% Similarity=0.592 Sum_probs=49.9
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
.+.+.|+||++.+..|++++|||.||..||..|+..... ......||+|+..+...++.+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~---~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRN---TDGKGNCPVCRVPYPFGNLKP 76 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBC---TTSCBCCTTTCCCCCTTCCEE
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccC---CCCCCCCCCCCCcCCHHhCCc
Confidence 356899999999999999999999999999999987421 112479999999998877765
No 16
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=106.44 Aligned_cols=52 Identities=25% Similarity=0.508 Sum_probs=45.2
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC-CCc
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS-KEL 168 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~-~~L 168 (685)
+.+.||||++.+..|++++|||+||..||..|+... ...||+|+..+.. ..+
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~ 103 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ--------VFSCPACRYDLGRSYAM 103 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--------CCBCTTTCCBCCTTCCC
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC--------cCCCCCCCccCCCCCCC
Confidence 467899999999999999999999999999999842 3699999999876 444
No 17
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.2e-10 Score=92.27 Aligned_cols=47 Identities=43% Similarity=0.856 Sum_probs=40.6
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (685)
..+.+.||||++.+.+|++++|||+||..||.+|+.... ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC------GFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS------SCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC------CCCcCcCC
Confidence 346789999999999999999999999999999998522 23799998
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.2e-10 Score=97.05 Aligned_cols=47 Identities=30% Similarity=0.638 Sum_probs=42.8
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
..+.|+||++.+..|++++|||+||..||..|+.. ...||+|+..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA---------TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH---------CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC---------CCcCCCcCcccc
Confidence 46789999999999999999999999999999974 268999999885
No 19
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.02 E-value=7.6e-11 Score=103.75 Aligned_cols=54 Identities=31% Similarity=0.725 Sum_probs=46.5
Q ss_pred CCCccccccCcCCCCcEEc-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 108 PLSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
.+.+.|+||++.+..|+++ +|||.||..||..|+.. ...||+|+..+...++.+
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY---------KTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---------CCBCTTTCCBCCGGGCEE
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC---------CCCCCCCCCcCChhhCCc
Confidence 3568999999999999987 89999999999999974 269999999887766654
No 20
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.02 E-value=1.9e-10 Score=101.60 Aligned_cols=56 Identities=13% Similarity=-0.020 Sum_probs=50.1
Q ss_pred CCCCccccccCcCCCCcEEccCC-CcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceee
Q 005653 107 NPLSVQCPICLEYPLCPQITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CG-HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (685)
.++.+.||||++.+.+|++++|| |+||..||.+|+.. ...||+|+..+...+|.+.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~---------~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS---------DQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT---------SCBCTTTCSBCCTTTSEEC
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh---------CCCCCCCCCCCChhhceEc
Confidence 46789999999999999999999 99999999999974 2689999999988888763
No 21
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.01 E-value=4.6e-11 Score=100.35 Aligned_cols=61 Identities=31% Similarity=0.533 Sum_probs=49.0
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
.+.+.||||++.+..|++++|||+||..||.+|+...... ......||+|+..+...++.+
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~--~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTS--MGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSS--CCCCCCCSSSCCCCCSSGGGT
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccC--CCCCCcCCCCCCcCCHhhCCc
Confidence 4678999999999999999999999999999998753211 112479999999988766654
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.9e-11 Score=98.13 Aligned_cols=51 Identities=33% Similarity=0.707 Sum_probs=44.4
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCc
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (685)
+...|+||++.+..|++++|||+||..||..|+.. ...||+|+..+...++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL---------GKRCALCRQEIPEDFL 64 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC---------SSBCSSSCCBCCHHHH
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC---------CCcCcCcCchhCHhhc
Confidence 46789999999999999999999999999999864 2689999998865544
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.99 E-value=1.3e-10 Score=108.80 Aligned_cols=47 Identities=34% Similarity=0.708 Sum_probs=41.6
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
+++.||||++.+..|++++|||.||..||..|+.. ...||+||..+.
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR---------KIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT---------CSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc---------CCcCCCCCCcCC
Confidence 45789999999999999999999999999999864 368999998763
No 24
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.7e-10 Score=96.47 Aligned_cols=60 Identities=30% Similarity=0.623 Sum_probs=49.0
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
.+.+.|+||++.+..|++++|||.||..||..|+...... .....||+|+..+...++.+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~---~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLD---KGESSCPVCRISYQPENIRP 76 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHT---TSCCCCTTTCCSSCSSSCCC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcC---CCCCcCCCCCCccCHHhcCc
Confidence 4578999999999999999999999999999999862100 02479999999998777654
No 25
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.97 E-value=3.4e-10 Score=107.66 Aligned_cols=50 Identities=26% Similarity=0.503 Sum_probs=44.9
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (685)
+.+.|+||++.+..|++++|||+||..||..|+... ...||+|+..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ--------VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--------CCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC--------CCcCCCCCccCCCC
Confidence 468999999999999999999999999999999852 26899999998776
No 26
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.96 E-value=2.7e-10 Score=117.54 Aligned_cols=56 Identities=20% Similarity=0.095 Sum_probs=49.1
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
.+..+.||||++.+.+|++++|||+||..||.+|+.... ..||+|+.++...+|.+
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~--------~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--------HFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC--------SSCTTTCCCCCGGGCEE
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC--------CCCcCCCCCCchhcCcc
Confidence 456899999999999999999999999999999998632 35999999998777765
No 27
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.6e-10 Score=92.92 Aligned_cols=49 Identities=35% Similarity=0.716 Sum_probs=42.2
Q ss_pred CCCccccccCcCCCCc-------EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 108 PLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P-------~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
.+...|+||++.+..+ +++.|||+||..||..|+.. ...||+|+..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---------CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---------CCCCCCCCCccCc
Confidence 4568899999988776 78999999999999999985 2699999998754
No 28
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=8e-11 Score=106.99 Aligned_cols=69 Identities=23% Similarity=0.516 Sum_probs=52.6
Q ss_pred CcCcCCCchhhhhhccCCCCCccccccCcCCCCcEEc-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCc
Q 005653 90 DPDKMLQWEDIICVRYSNPLSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (685)
Q Consensus 90 dpd~~l~w~~i~qv~~~~~~~~~CPICLe~~~~P~~t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (685)
.++...+|...........+.+.||||++.+..|+++ +|||+||..||..|+. ..||+|+..+...++
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 2 EPDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----------TGCPVCYTPAWIQDL 70 (117)
T ss_dssp CSSTTCCCHHHHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----------TBCSSSCCBCSCSSC
T ss_pred CCCcccCccchHHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----------CCCcCCCCcCccccc
Confidence 3455667755433333334679999999999999998 9999999999998874 589999998765544
Q ss_pred e
Q 005653 169 Y 169 (685)
Q Consensus 169 ~ 169 (685)
.
T Consensus 71 ~ 71 (117)
T 1jm7_B 71 K 71 (117)
T ss_dssp C
T ss_pred c
Confidence 3
No 29
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=4.8e-10 Score=98.15 Aligned_cols=61 Identities=23% Similarity=0.389 Sum_probs=48.5
Q ss_pred CCCCccccccCcCCCCcEEcc-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--cccc-cCCCCcee
Q 005653 107 NPLSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVM-ISSKELYT 170 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~-CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl--Cr~~-i~~~~L~~ 170 (685)
....+.||||++.+.+|++++ |||+||..||..|+....+ ......||+ |+.. +...+|++
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~---~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQK---RKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHT---TTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccC---cCCCCCCCcCcCcccccCHhhCcC
Confidence 356789999999999999995 9999999999999986310 002369999 9876 77777765
No 30
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.93 E-value=1.7e-10 Score=111.06 Aligned_cols=49 Identities=39% Similarity=0.760 Sum_probs=42.6
Q ss_pred CCccccccCcCCCCcEEc-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
+.+.||||++.+..|+++ +|||+||..||..|+... ...||+|+..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG--------NKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT--------CCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC--------cCCCCCCCCcCCC
Confidence 457899999999999987 999999999999999852 3789999997743
No 31
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=4.4e-10 Score=102.23 Aligned_cols=56 Identities=29% Similarity=0.632 Sum_probs=48.4
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
..+.+.||||++.+..|++++|||+||..||..|+.... ..||+|+..+...++.+
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--------HKCPVDNEILLENQLFP 70 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--------SBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC--------CCCCCCCCCcCHHhccc
Confidence 446789999999999999999999999999999998632 48999999998776654
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=6.2e-10 Score=87.74 Aligned_cols=46 Identities=37% Similarity=0.842 Sum_probs=39.4
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (685)
.+...|+||++.+..|++++|||+||..||.+|+.... ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE------RDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC------CSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC------CCCCCCCC
Confidence 35689999999999999999999999999999986421 24799998
No 33
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.91 E-value=6.4e-10 Score=108.51 Aligned_cols=57 Identities=19% Similarity=0.082 Sum_probs=50.2
Q ss_pred CCCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 106 SNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 106 ~~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
..++.+.||||++.+.+|++++|||+||..||..|+.... ..||+|+.++...+|.+
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--------~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--------HFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--------SBCTTTCCBCCGGGCEE
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--------CCCCCCcCCCChhhCcc
Confidence 3567899999999999999999999999999999998632 36999999998888776
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.91 E-value=6.5e-10 Score=99.41 Aligned_cols=49 Identities=33% Similarity=0.726 Sum_probs=43.1
Q ss_pred CCccccccCcCCCCcEEc-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCC
Q 005653 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (685)
+.+.||||++.+..|+++ +|||+||..||..|+.. ...||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET---------SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS---------CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh---------CCcCcCCCcccccc
Confidence 578999999999999987 99999999999999974 27999999977543
No 35
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.89 E-value=6.5e-10 Score=93.27 Aligned_cols=53 Identities=26% Similarity=0.639 Sum_probs=43.7
Q ss_pred CCccccccCcCCCCc---EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 109 LSVQCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 109 ~~~~CPICLe~~~~P---~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
....|+||++.+..+ ++++|||+||..||.+|+.. ...||+||..+...++.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ---------HDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT---------TCSCTTTCCCCCCSCSCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc---------CCcCcCcCCccCCcccCC
Confidence 467899999988655 46799999999999999964 268999999887766553
No 36
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.88 E-value=9.4e-10 Score=99.54 Aligned_cols=54 Identities=35% Similarity=0.605 Sum_probs=47.1
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
+.+.||||++.+..|++++|||+||..||.+|+... ...||+|+..+...++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM--------GSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT--------CSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC--------cCcCCCCCCCCCHhhccc
Confidence 367899999999999999999999999999999863 268999999988766543
No 37
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.86 E-value=1.4e-09 Score=84.81 Aligned_cols=47 Identities=40% Similarity=0.734 Sum_probs=40.3
Q ss_pred CCccccccCcCCCC----cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~----P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
....|+||++.+.. +++++|||+||..||..|+... ..||+|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---------YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---------CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---------CcCCCCCCcCC
Confidence 46789999998855 7789999999999999999862 68999998764
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=8.1e-10 Score=101.28 Aligned_cols=57 Identities=35% Similarity=0.659 Sum_probs=49.1
Q ss_pred CCCccccccCcCCCCc-------EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEe
Q 005653 108 PLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P-------~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (685)
.+.+.|+||++.+..| ++++|||+||..||.+|+.. ...||+|+..+...++.++++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT---------CSBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh---------CCCCCCCCCcCcccccccccc
Confidence 4678999999999888 89999999999999999974 269999999998887776544
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.84 E-value=4e-10 Score=101.87 Aligned_cols=48 Identities=31% Similarity=0.690 Sum_probs=41.7
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
+.+.||||++.+..|++++|||.||..||..|+... ...||+|+..+.
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA--------SLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT--------TSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC--------cCCCCCCCcccC
Confidence 467899999999999999999999999999998642 378999998663
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.84 E-value=1.7e-09 Score=91.52 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=42.4
Q ss_pred CCCCccccccCcCCC--CcEEcc--CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCc
Q 005653 107 NPLSVQCPICLEYPL--CPQITS--CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (685)
Q Consensus 107 ~~~~~~CPICLe~~~--~P~~t~--CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (685)
..+++.||||++.+. .+.+.+ |||.||..||.+++... ...||+||..+....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~--------~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE--------NGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS--------CSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC--------CCCCCCCCCccCCCch
Confidence 346789999999774 344544 99999999999987532 3799999999887665
No 41
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.83 E-value=1.7e-09 Score=88.25 Aligned_cols=47 Identities=38% Similarity=0.886 Sum_probs=41.0
Q ss_pred CCccccccCcCCCCc-EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCP-QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P-~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
....|+||++.+..| +.++|||.||..||..|+.. ...||+|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ---------NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH---------SCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC---------cCcCcCCChhhH
Confidence 467899999999886 68899999999999999974 269999998774
No 42
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.4e-09 Score=111.22 Aligned_cols=58 Identities=26% Similarity=0.514 Sum_probs=49.3
Q ss_pred CCCCCccccccCcCCCCcEE-ccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--cccccCCCCcee
Q 005653 106 SNPLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKELYT 170 (685)
Q Consensus 106 ~~~~~~~CPICLe~~~~P~~-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl--Cr~~i~~~~L~~ 170 (685)
.....+.||||++.+..|++ +.|||+||..||..|+... ....||+ |+..+...+|++
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~-------~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY-------TTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC-------SCEECSGGGCSCEECGGGEEE
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC-------CCCCCCcccccCcCchhhCCc
Confidence 34578999999999999997 5999999999999999742 1368999 999888877765
No 43
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=3.1e-09 Score=87.00 Aligned_cols=48 Identities=33% Similarity=0.702 Sum_probs=40.0
Q ss_pred CCccccccCcCCC---CcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPL---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~---~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
....|+||++.+. .++.++|||+||..||..|+... ..||+||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---------KKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---------SBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---------CCCcCcCccccC
Confidence 4678999998774 45689999999999999999862 579999997753
No 44
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.82 E-value=2.6e-09 Score=96.15 Aligned_cols=53 Identities=28% Similarity=0.639 Sum_probs=41.3
Q ss_pred CCccccccCcCCCCcE------------------EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPLCPQ------------------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~------------------~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
.+..|+||++.+..+. +++|||+||..||..|+..... .....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~----~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK----DGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC----SSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC----CCCCcCCCCCCccCC
Confidence 4568999999886543 7899999999999999975321 124799999997753
No 45
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.81 E-value=1e-09 Score=103.24 Aligned_cols=52 Identities=23% Similarity=0.454 Sum_probs=44.7
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCC
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (685)
..+.+.||||++.+..|+.+.|||.||..||..|+... ...||+|+..+...
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG--------PQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS--------CEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC--------CCCCCCCCCccccc
Confidence 45678999999999999999999999999999999742 26899999976433
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=8.4e-10 Score=90.65 Aligned_cols=50 Identities=26% Similarity=0.649 Sum_probs=43.1
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCC
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (685)
.+...|+||++.+.. ++++|||.||..||.+|+.. ...||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR---------HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC---------CSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC---------cCcCCCcCCcccCCC
Confidence 356899999999988 89999999999999999863 379999999887554
No 47
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.80 E-value=2.1e-09 Score=93.28 Aligned_cols=48 Identities=29% Similarity=0.648 Sum_probs=40.5
Q ss_pred CCccccccCcCCCC---cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~~---P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
....|+||++.+.. ++.++|||+||..||..|+.. ...||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---------~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---------SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---------TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---------CCcCcCcCccCCC
Confidence 46789999988776 677899999999999999964 2689999987753
No 48
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=1.9e-09 Score=89.91 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=41.3
Q ss_pred CCCccccccCcCCCCc---EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 108 PLSVQCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P---~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
.+...|+||++.+..+ +.++|||+||..||..|+.. ...||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---------~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA---------NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH---------CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc---------CCcCcCcCCcCCC
Confidence 3567899999988766 67899999999999999975 2689999987754
No 49
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.77 E-value=2.8e-09 Score=83.18 Aligned_cols=47 Identities=30% Similarity=0.653 Sum_probs=39.3
Q ss_pred CCCccccccCcCCCC---cEEcc-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 108 PLSVQCPICLEYPLC---PQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 108 ~~~~~CPICLe~~~~---P~~t~-CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
.+...|+||++.+.. ++++. |||+||..||..|+.. ...||+||..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---------HSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---------CCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---------CCcCcCCCCEe
Confidence 356789999998876 66775 9999999999999864 36899999865
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=3.8e-09 Score=87.64 Aligned_cols=49 Identities=33% Similarity=0.684 Sum_probs=40.1
Q ss_pred CCCccccccCcCCCCcE---EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 108 PLSVQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~---~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
.....|+||++.+..+. +++|||+||..||..|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---------~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---------KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---------SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---------CcCCCcCccccc
Confidence 34678999999887654 44999999999999999852 589999997753
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.76 E-value=2.3e-09 Score=98.26 Aligned_cols=58 Identities=34% Similarity=0.650 Sum_probs=50.5
Q ss_pred CCCCccccccCcCCCCc-------EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEe
Q 005653 107 NPLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P-------~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (685)
..+...|+||++.+..+ +.+.|||+||..||.+|+.. .+.||+|+..+..+++.++++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH---------CSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc---------CCCCCCCCCcCChhcceeeeC
Confidence 34678899999988776 78999999999999999985 369999999999999988764
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.72 E-value=5.2e-09 Score=100.99 Aligned_cols=56 Identities=29% Similarity=0.632 Sum_probs=48.7
Q ss_pred CCCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
..+.+.||||++.+..|++++|||+||..||.+|+.... ..||+|+..+...++.+
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--------HKCPVDNEILLENQLFP 70 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--------SBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC--------CCCCCCccCcchhhhhh
Confidence 456789999999999999999999999999999998532 59999999998776654
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=2.8e-09 Score=84.22 Aligned_cols=45 Identities=24% Similarity=0.645 Sum_probs=39.1
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
+.+.|+||++.+..|++++|||.||..||..+ ...||+|+..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------------GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------------SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC------------CCCCCcCCcEeec
Confidence 56889999999999999999999999998651 2689999997754
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.68 E-value=6.5e-09 Score=112.43 Aligned_cols=51 Identities=29% Similarity=0.641 Sum_probs=44.1
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (685)
....|+||++.+..|++++|||.||..||..|+... ...||+||..+....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~--------~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE--------GQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT--------CSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC--------CCCCCCCCCccCCce
Confidence 347999999999999999999999999999999742 379999999876543
No 55
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.64 E-value=1.3e-08 Score=82.02 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=48.5
Q ss_pred CccccccCcCCCCcEEc-cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCceeeEe
Q 005653 110 SVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (685)
.+.||||++.+.+|+++ .|||+||..||.+|+... ..||+++.++...+|.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~---------~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT---------GNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH---------SBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC---------CCCcCCcCCCChhhcEECcc
Confidence 46899999999999999 999999999999999852 46999999999999988654
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.3e-08 Score=84.90 Aligned_cols=48 Identities=25% Similarity=0.435 Sum_probs=37.7
Q ss_pred CCccccccCcCCCC--------------cE-EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPLC--------------PQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~~--------------P~-~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
++..|+||++.+.. ++ ++.|||+||..||.+|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---------NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---------CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---------CCCCCCcCCCcch
Confidence 45678888887755 34 4469999999999999975 2589999997653
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.55 E-value=3.7e-08 Score=79.95 Aligned_cols=47 Identities=32% Similarity=0.595 Sum_probs=40.9
Q ss_pred CCccccccCcCCCCcEEc--cCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCPQIT--SCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t--~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
+...|+||++.+.+++++ +|||. ||..|+.+|+.. ...||+||..+.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR---------NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT---------TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc---------CCcCCCcCcchh
Confidence 467899999999999977 99999 899999999864 268999999874
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.50 E-value=4.9e-08 Score=81.46 Aligned_cols=43 Identities=28% Similarity=0.877 Sum_probs=38.3
Q ss_pred CCccccccCcCCCCcEEccCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
+...|+||++.+.++++++|||. ||..|+.. |..||+||..+.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-------------~~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-------------VDKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTT-------------CSBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhc-------------CccCCCcCcCcc
Confidence 46789999999999999999999 99999864 369999999875
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.48 E-value=7.6e-08 Score=77.85 Aligned_cols=46 Identities=28% Similarity=0.604 Sum_probs=40.1
Q ss_pred CccccccCcCCCCcEEc--cCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 110 SVQCPICLEYPLCPQIT--SCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t--~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
...|+||++.+.+++++ +|||. ||+.|+.++... ...||+||..|.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA---------GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT---------TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh---------CCcCCCcCchhh
Confidence 56899999999999877 99998 999999998864 268999999874
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=7.4e-08 Score=80.44 Aligned_cols=44 Identities=27% Similarity=0.836 Sum_probs=38.4
Q ss_pred CCccccccCcCCCCcEEccCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
+...|+||++.+.+|++++|||. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-------------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-------------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-------------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-------------CCCCccCCceecC
Confidence 45789999999999999999999 99999942 2689999998754
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=2.9e-08 Score=86.50 Aligned_cols=61 Identities=28% Similarity=0.496 Sum_probs=43.8
Q ss_pred CCCccccccCcCCCCcEEc---cCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--cccc--cCCCCce
Q 005653 108 PLSVQCPICLEYPLCPQIT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVM--ISSKELY 169 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t---~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl--Cr~~--i~~~~L~ 169 (685)
.+.+.|+||++.+..+.++ .|||.||..||..|+......+. .....||. |+.. +....++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGL-ETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCS-CCCEECSCTTCSSCCEECHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCC-cccccCccccCCCCCccCHHHHH
Confidence 3567899999998887654 79999999999999985311111 01368999 9987 5544433
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.36 E-value=2.1e-07 Score=83.30 Aligned_cols=47 Identities=28% Similarity=0.494 Sum_probs=38.2
Q ss_pred CCccccccCcCCCCc------------------EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCP------------------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P------------------~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
+...|+||++.+..+ +.++|||.||..||..|+.. ...||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---------CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---------CCcCcCCCCcce
Confidence 456799999887654 35799999999999999975 268999999653
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3.6e-07 Score=75.13 Aligned_cols=44 Identities=25% Similarity=0.692 Sum_probs=38.6
Q ss_pred CCccccccCcCCCCcEEccCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
+...|+||++.+.++++++|||. ||..|+.. ...||+||..|..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------------FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------------CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------------CCCCCCCCcchhc
Confidence 46789999999999999999999 99999973 2699999997753
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.27 E-value=3.7e-07 Score=77.20 Aligned_cols=44 Identities=27% Similarity=0.750 Sum_probs=38.2
Q ss_pred CCccccccCcCCCCcEEccCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
+...|+||++.+.+++.++|||. ||..|+.. +..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------------~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQ-------------LQSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTT-------------CSBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHh-------------cCcCCCCCchhhC
Confidence 35689999999999999999999 99999853 3599999998754
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.12 E-value=4.3e-07 Score=97.39 Aligned_cols=43 Identities=26% Similarity=0.838 Sum_probs=38.6
Q ss_pred CCccccccCcCCCCcEEccCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
+...|+||++.+.+|+.++|||. ||..|+.. +..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~-------------~~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPS-------------LRKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGG-------------CSBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhc-------------CCcCCCCCCCcc
Confidence 56899999999999999999999 99999864 368999999875
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.12 E-value=3.1e-07 Score=83.53 Aligned_cols=46 Identities=28% Similarity=0.482 Sum_probs=0.4
Q ss_pred CccccccCcCCCCc-----------------E-EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 110 SVQCPICLEYPLCP-----------------Q-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 110 ~~~CPICLe~~~~P-----------------~-~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
.-.|+||++.+..+ + .++|||.||..||..|+.. ...||+||..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---------~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCPLDNREWE 111 (117)
T ss_dssp C------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---------CCcCCCCCCeee
Confidence 45799999887653 2 2589999999999999975 268999999753
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=4e-06 Score=71.13 Aligned_cols=51 Identities=27% Similarity=0.488 Sum_probs=41.1
Q ss_pred CCCccccccCcCC--CCcEEccCC-----CcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 108 PLSVQCPICLEYP--LCPQITSCG-----HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 108 ~~~~~CPICLe~~--~~P~~t~CG-----HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
.+...|.||++.+ ..+.+++|+ |.|+..||.+|+.... ...||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-------~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD-------TRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC-------CSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC-------CCCCCCCCCeeec
Confidence 3467899999766 467788996 9999999999998632 2689999998754
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.63 E-value=3.1e-05 Score=67.73 Aligned_cols=45 Identities=29% Similarity=0.625 Sum_probs=37.2
Q ss_pred cccccCcCCC-CcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 112 QCPICLEYPL-CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 112 ~CPICLe~~~-~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
.|++|.-++. -.+|.+|.|+||+.|+..|.+... +.||.|+++|.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~--------k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD--------KMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC--------CBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC--------CCCcCcCCeee
Confidence 5999987665 456999999999999999987533 79999999764
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.50 E-value=9.1e-05 Score=61.83 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=38.2
Q ss_pred CccccccCcCCCCcE-EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 110 ~~~CPICLe~~~~P~-~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
...|.||.+.+..-. ...|+|.|...||.+|++... ...||+|+..+.
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~-------~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-------EPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS-------SCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC-------CCCCCCCcCcCC
Confidence 457999998876433 458999999999999997632 268999998654
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.07 E-value=0.00036 Score=55.71 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=39.5
Q ss_pred CCCccccccCcCCCCcEEccCC--C---cccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 108 PLSVQCPICLEYPLCPQITSCG--H---IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CG--H---iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
.+...|.||++....+.+.+|. | .|...||.+|+.... ...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-------~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR-------NTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT-------CSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC-------CCccCCCCCeee
Confidence 3567899999877777778865 4 899999999998632 379999998764
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.02 E-value=0.00012 Score=77.35 Aligned_cols=56 Identities=23% Similarity=0.508 Sum_probs=38.7
Q ss_pred CCccccccCcCCCC----cE----EccCCCcccHHHHHHHHHcCCCCCC--CCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLC----PQ----ITSCGHIFCFPCILQYLLMGDEDYK--GDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~----P~----~t~CGHiFC~~CI~~~l~~~~~~~k--~~~~~~CPlCr~~i~ 164 (685)
....|+||++.+.. |. ...|||.|+..||.+|+........ ..-...||.|+.+|.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45689999987654 32 2479999999999999986321000 001257999999774
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.27 E-value=0.022 Score=49.51 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=27.3
Q ss_pred CCccccccCcC-CCCcEE--ccCCCcccHHHHHHHH
Q 005653 109 LSVQCPICLEY-PLCPQI--TSCGHIFCFPCILQYL 141 (685)
Q Consensus 109 ~~~~CPICLe~-~~~P~~--t~CGHiFC~~CI~~~l 141 (685)
+++.|+||++. +..|+. +.|||.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 46789999965 677776 8999999999998743
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.52 E-value=0.051 Score=55.04 Aligned_cols=49 Identities=27% Similarity=0.576 Sum_probs=38.3
Q ss_pred CCccccccCcCCCCcE-EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~-~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
....|.||.+...... ...|+|.|+..|+.+|+.... ...||.|.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~-------~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-------EPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS-------SCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC-------CCCCCCCCCCCC
Confidence 3578999999776544 445999999999999997532 369999988653
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.00 E-value=0.2 Score=59.68 Aligned_cols=57 Identities=14% Similarity=0.012 Sum_probs=49.7
Q ss_pred cCCCCCccccccCcCCCCcEEccCC-CcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCCcee
Q 005653 105 YSNPLSVQCPICLEYPLCPQITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (685)
Q Consensus 105 ~~~~~~~~CPICLe~~~~P~~t~CG-HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (685)
...|+.+.|||-++.+.+|++++.| ++|-..+|.+|+.. ...||.-+.++...+|.|
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~---------~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS---------DSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---------CCBCTTTCCBCCGGGCEE
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc---------CCCCCCCCCCCCcccccc
Confidence 3567899999999999999999998 58999999999974 258999999988777766
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.47 E-value=0.26 Score=41.10 Aligned_cols=36 Identities=31% Similarity=0.665 Sum_probs=30.1
Q ss_pred CCccccccCcCCCCcEEccC----CCcccHHHHHHHHHcC
Q 005653 109 LSVQCPICLEYPLCPQITSC----GHIFCFPCILQYLLMG 144 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~C----GHiFC~~CI~~~l~~~ 144 (685)
..+.|.+|.+.+.+.....| +|.||++|-..+++.+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 35789999999888776666 7999999999998864
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=86.13 E-value=0.33 Score=41.77 Aligned_cols=47 Identities=21% Similarity=0.510 Sum_probs=34.9
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (685)
..+.|-.|.-.... .+.-.-|.+|+.||...+.. +..||+|+.++..
T Consensus 27 G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~---------SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSV---------SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSS---------SSEETTTTEECCC
T ss_pred CcccChhhccccCC-eeeecchhhHHHHHHHHHhh---------ccCCcccCCcCCc
Confidence 56789999866552 33344599999999877754 3699999998753
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=84.26 E-value=0.76 Score=49.19 Aligned_cols=53 Identities=32% Similarity=0.597 Sum_probs=39.1
Q ss_pred CccccccCcCCCCcE-EccCCCcccHHH--HHHHHHcCCCCCCCCCcCCCCCcccccCCCCce
Q 005653 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPC--ILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (685)
Q Consensus 110 ~~~CPICLe~~~~P~-~t~CGHiFC~~C--I~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (685)
.+.|||-...+..|. -..|.|.-|++- ++.+.... ....||+|...+...+|.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~-------~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQI-------PTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHS-------CCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcC-------CceeCCCCCcccCHHHee
Confidence 588999999999988 568999966554 44443321 347899999988777764
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=81.03 E-value=1.2 Score=47.54 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=38.7
Q ss_pred CccccccCcCCCCcE-EccCCCcccHH--HHHHHHHcCCCCCCCCCcCCCCCcccccCCCCce
Q 005653 110 SVQCPICLEYPLCPQ-ITSCGHIFCFP--CILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (685)
Q Consensus 110 ~~~CPICLe~~~~P~-~t~CGHiFC~~--CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (685)
.+.|||-...+..|. -..|.|.-|++ -++.+.... ....||+|...+...+|.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~-------~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKK-------PTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHS-------CCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhC-------CCeECCCCCcccCHHHeE
Confidence 578999999999888 56899996554 344433321 247999999988877764
No 79
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=67.60 E-value=1.1 Score=48.51 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCccccccCcCCCCc----EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 109 LSVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 109 ~~~~CPICLe~~~~P----~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
....|.+|...+.-- ....||++||..|....+..... .....+.|-.|...+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~--~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYL--KDRMAKVCDGCFGELK 431 (434)
T ss_dssp ------------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCC--CCCcCEecHHHHHHHH
Confidence 356799999876522 25689999999998765533211 1123478888877654
No 80
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=55.88 E-value=5.6 Score=33.33 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=32.6
Q ss_pred CCCccccccCcCCCCcE----EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccC
Q 005653 108 PLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~----~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (685)
.+...|.+|...|.--. .-.||++||..|....+..... +-....+.|-.|...+.
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~-~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMR-GITEPERVCDACYLALR 78 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTT-TEEEEEECCHHHHHHHH
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCC-CCCCCCEECHHHHHHHh
Confidence 35678999998775322 4679999999996543221110 00012356666665543
No 81
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=54.15 E-value=3.3 Score=37.50 Aligned_cols=30 Identities=27% Similarity=0.601 Sum_probs=22.9
Q ss_pred CccccccCcCCCCc----EEccCCCcccHHHHHH
Q 005653 110 SVQCPICLEYPLCP----QITSCGHIFCFPCILQ 139 (685)
Q Consensus 110 ~~~CPICLe~~~~P----~~t~CGHiFC~~CI~~ 139 (685)
...|.+|...|.-- ..-.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 46899999877532 2467999999999644
No 82
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.41 E-value=6.2 Score=32.98 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCCCccccccCcCCCCcE----EccCCCcccHHHHH
Q 005653 107 NPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCIL 138 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~----~t~CGHiFC~~CI~ 138 (685)
..+...|.+|...|..-. ...||.+||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 334568999998775322 46799999999954
No 83
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=52.14 E-value=4.6 Score=34.27 Aligned_cols=32 Identities=22% Similarity=0.465 Sum_probs=23.6
Q ss_pred CCCccccccCcCCCCc--E--EccCCCcccHHHHHH
Q 005653 108 PLSVQCPICLEYPLCP--Q--ITSCGHIFCFPCILQ 139 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P--~--~t~CGHiFC~~CI~~ 139 (685)
.+...|.+|...|..- + ...||++||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3456899999876532 2 467999999999643
No 84
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=51.37 E-value=5.4 Score=33.24 Aligned_cols=54 Identities=22% Similarity=0.527 Sum_probs=32.5
Q ss_pred CCCCccccccCcCCCCcE----EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 107 NPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~----~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
..+...|.+|...|.--. .-.||.+||..|....+.... .....+.|-.|...+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPS---YPKPVRVCDSCHTLL 73 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTT---CSSCEEECHHHHHHT
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCC---CCCcCEECHHHHHHH
Confidence 334568999998776322 467999999999754322111 011235666665544
No 85
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.15 E-value=5.2 Score=39.51 Aligned_cols=29 Identities=24% Similarity=0.585 Sum_probs=22.0
Q ss_pred ccccccCcCCCCc----EEccCCCcccHHHHHH
Q 005653 111 VQCPICLEYPLCP----QITSCGHIFCFPCILQ 139 (685)
Q Consensus 111 ~~CPICLe~~~~P----~~t~CGHiFC~~CI~~ 139 (685)
..|++|...|.-- ..-.||++||..|...
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 5899999876522 1467999999999543
No 86
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=44.67 E-value=8.5 Score=32.68 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCccccccCcCCCCc----EEccCCCcccHHHHHHH
Q 005653 109 LSVQCPICLEYPLCP----QITSCGHIFCFPCILQY 140 (685)
Q Consensus 109 ~~~~CPICLe~~~~P----~~t~CGHiFC~~CI~~~ 140 (685)
+...|.+|...|.-- ....||++||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 346799999876521 24689999999996543
No 87
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.44 E-value=8.6 Score=38.19 Aligned_cols=52 Identities=21% Similarity=0.434 Sum_probs=30.6
Q ss_pred ccccccCcCCCCc----EEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 111 VQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 111 ~~CPICLe~~~~P----~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
..|.+|...|.-- ....||++||..|.......... +.....+.|-.|...+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~-~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKF-GIEKEVRVCEPCYEQL 220 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGG-TEEEEEEECHHHHHHH
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCC-CCCCCCEeCHHHHHHh
Confidence 4899999876532 25689999999996543221100 0001235676676544
No 88
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=43.51 E-value=6.6 Score=35.37 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=22.3
Q ss_pred CccccccCcCCCCcE----EccCCCcccHHHHHH
Q 005653 110 SVQCPICLEYPLCPQ----ITSCGHIFCFPCILQ 139 (685)
Q Consensus 110 ~~~CPICLe~~~~P~----~t~CGHiFC~~CI~~ 139 (685)
...|.+|...|..-. .-.||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 457999998876322 467999999999543
No 89
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=39.72 E-value=8.9 Score=31.16 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=21.4
Q ss_pred ccccccCcCCCCcE----EccCCCcccHHHHH
Q 005653 111 VQCPICLEYPLCPQ----ITSCGHIFCFPCIL 138 (685)
Q Consensus 111 ~~CPICLe~~~~P~----~t~CGHiFC~~CI~ 138 (685)
..|.+|...|.--. .-.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999998765322 46799999999953
No 90
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=38.46 E-value=5.5 Score=27.95 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=12.7
Q ss_pred CCCccccccCcCCCCcE
Q 005653 108 PLSVQCPICLEYPLCPQ 124 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~ 124 (685)
.+.+.||||+..+..+-
T Consensus 3 ~EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSAD 19 (34)
T ss_dssp SEEEECTTTCCEESSHH
T ss_pred CcccCCcHHHHHcCCHH
Confidence 35689999998776653
No 91
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=36.71 E-value=4.8 Score=31.74 Aligned_cols=33 Identities=21% Similarity=0.565 Sum_probs=22.9
Q ss_pred CccccccCcCCCCc----EEc--c--CCCcccHHHHHHHHH
Q 005653 110 SVQCPICLEYPLCP----QIT--S--CGHIFCFPCILQYLL 142 (685)
Q Consensus 110 ~~~CPICLe~~~~P----~~t--~--CGHiFC~~CI~~~l~ 142 (685)
...||-|....... .|+ . ||+.|||.|...|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 35799998766532 233 3 999999999877654
No 92
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=31.71 E-value=19 Score=28.30 Aligned_cols=40 Identities=23% Similarity=0.588 Sum_probs=28.5
Q ss_pred ccccccCcCCCCcE---EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCc
Q 005653 111 VQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (685)
Q Consensus 111 ~~CPICLe~~~~P~---~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (685)
..|--|+..+.... ...|+++||..|=+ |+.. .-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe--------~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHD--------SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTT--------TSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHh--------hccCCcCC
Confidence 45888988775433 56899999999954 3322 24789988
No 93
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=31.56 E-value=3.2 Score=43.45 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=32.7
Q ss_pred CCccccccCcCCCCcEEc----cCC--CcccHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 005653 109 LSVQCPICLEYPLCPQIT----SCG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t----~CG--HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (685)
....||||-..+...++. .=| +.+|..|-..|-.. ..+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~---------R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV---------RIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC---------TTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec---------CcCCcCCCCC
Confidence 457899999998877654 234 56788887766432 2699999875
No 94
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=31.30 E-value=51 Score=27.83 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=32.6
Q ss_pred CCCCccccccCcCCCCcE--EccCCCcccHHHHHHHHHcCCC-------CCCCCCcCCCCCcc
Q 005653 107 NPLSVQCPICLEYPLCPQ--ITSCGHIFCFPCILQYLLMGDE-------DYKGDCFKRCPLCF 160 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~--~t~CGHiFC~~CI~~~l~~~~~-------~~k~~~~~~CPlCr 160 (685)
.+.+..|.||--....-. ...|+-+|...|+.+--..+.+ ..+-.....||.|.
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 345778999984332221 3469999999999885322221 01112346899993
No 95
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=29.90 E-value=46 Score=30.95 Aligned_cols=48 Identities=13% Similarity=0.303 Sum_probs=36.3
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCC
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (685)
+-+.|..|...+.......=|.+||..|..+.+. .+|..|...|...+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----------~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----------TKCAACQLGIPPTQ 79 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS-----------CBCTTTCCBCCTTS
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc-----------ccccccccccCCCc
Confidence 4588999988776544566799999999877653 58999988776543
No 96
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=28.64 E-value=18 Score=42.31 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=36.0
Q ss_pred CCCCccccccCcCCCCcE----------EccCCCc--------------------ccHHHHHHHHHcCCCCCCCCCcCCC
Q 005653 107 NPLSVQCPICLEYPLCPQ----------ITSCGHI--------------------FCFPCILQYLLMGDEDYKGDCFKRC 156 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~----------~t~CGHi--------------------FC~~CI~~~l~~~~~~~k~~~~~~C 156 (685)
.++...|+-|+.++.+|. +|.||-. +|-.|...|-....... ......|
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRf-hAqp~aC 186 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRF-HAQPVAC 186 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTT-TCTTCCC
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccc-cCCCCcC
Confidence 456678999997655432 5677743 59999999876533110 0123579
Q ss_pred CCccccc
Q 005653 157 PLCFVMI 163 (685)
Q Consensus 157 PlCr~~i 163 (685)
|.|.-.+
T Consensus 187 ~~CGP~l 193 (761)
T 3vth_A 187 FDCGPSL 193 (761)
T ss_dssp TTTSCCE
T ss_pred CccCCee
Confidence 9997644
No 97
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.52 E-value=27 Score=30.71 Aligned_cols=49 Identities=16% Similarity=0.094 Sum_probs=36.1
Q ss_pred CccccccCcCCCC---cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCC
Q 005653 110 SVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (685)
Q Consensus 110 ~~~CPICLe~~~~---P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (685)
-+.|..|...+.. .....=|.+||..|..+.+.. ..+|-.|..+|....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~---------~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN---------SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC---------CCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC---------CCccccCCCCcCchh
Confidence 4788999888752 345678899999998886642 138999999886543
No 98
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.02 E-value=2.4 Score=36.66 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=26.4
Q ss_pred CccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
+..||+|..++.. .=|+.+|..|-..|.. ...||.|..++
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~----------~a~CPdC~q~L 71 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFIEM----------KALCPDCHQPL 71 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEEEE----------EEECTTTCSBC
T ss_pred cccCccCCCccee----cCCEEECccccchhhc----------cccCcchhhHH
Confidence 4789999976542 1244558888544332 36899998866
No 99
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=26.68 E-value=51 Score=26.19 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=31.2
Q ss_pred CCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccc
Q 005653 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (685)
Q Consensus 109 ~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (685)
....|.||.+.-.--..-.|...|+..|+..-+.... .....||.|...
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P-----~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRP-----GTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCC-----SSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCC-----CCCEECccccCC
Confidence 3467999986432212347999999999864443321 123689999753
No 100
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=26.25 E-value=25 Score=41.25 Aligned_cols=56 Identities=27% Similarity=0.432 Sum_probs=35.6
Q ss_pred CCCCccccccCcCCCCcE----------EccCCCc--------------------ccHHHHHHHHHcCCCCCCCCCcCCC
Q 005653 107 NPLSVQCPICLEYPLCPQ----------ITSCGHI--------------------FCFPCILQYLLMGDEDYKGDCFKRC 156 (685)
Q Consensus 107 ~~~~~~CPICLe~~~~P~----------~t~CGHi--------------------FC~~CI~~~l~~~~~~~k~~~~~~C 156 (685)
.++...|+-|+.++.+|. +|.||-. +|-.|-..|-....... ......|
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRf-hAqp~aC 181 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRY-HAEPTAC 181 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTT-TCTTCCC
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCC-cCCCCCC
Confidence 456678999996654432 4667654 49999999986543210 1123589
Q ss_pred CCccccc
Q 005653 157 PLCFVMI 163 (685)
Q Consensus 157 PlCr~~i 163 (685)
|.|.-.+
T Consensus 182 ~~CGP~l 188 (772)
T 4g9i_A 182 PVCGPSY 188 (772)
T ss_dssp TTTSCCE
T ss_pred ccCCceE
Confidence 9997643
No 101
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.55 E-value=51 Score=28.80 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=35.8
Q ss_pred CCccccccCcCCCC-cEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCC
Q 005653 109 LSVQCPICLEYPLC-PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (685)
Q Consensus 109 ~~~~CPICLe~~~~-P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (685)
+-+.|..|...+.. .....=|..||..|..+.+ ..+|..|..+|...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~-----------~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH-----------AVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS-----------CCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc-----------CccCcccCCcCCcC
Confidence 45789999887765 3456789999999986643 26899999988754
No 102
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=23.48 E-value=39 Score=27.15 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=23.8
Q ss_pred CccccccCcCCCCcEEccC-CCcccHHHHHHHH
Q 005653 110 SVQCPICLEYPLCPQITSC-GHIFCFPCILQYL 141 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~C-GHiFC~~CI~~~l 141 (685)
..=|-||.+..+ -+...| |-.||..|.....
T Consensus 8 ~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 345999998833 457889 8899999987654
No 103
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=23.37 E-value=43 Score=31.51 Aligned_cols=49 Identities=12% Similarity=0.295 Sum_probs=35.8
Q ss_pred CCCccccccCcCCCCcEEccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCcccccCCCC
Q 005653 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (685)
Q Consensus 108 ~~~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (685)
..-+.|..|...+.......=|.+||..|..+.+ ..+|..|...|...+
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f-----------~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF-----------GTKCAACQLGIPPTQ 133 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT-----------SCCCTTTCCCCCSSC
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc-----------ccccccCCCccCCCc
Confidence 3567899998877654455678999999976533 268999998876543
No 104
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=21.18 E-value=36 Score=39.20 Aligned_cols=57 Identities=28% Similarity=0.490 Sum_probs=36.4
Q ss_pred CCCCCccccccCcCCCCcE----------EccCCCc--------------------ccHHHHHHHHHcCCCCCCCCCcCC
Q 005653 106 SNPLSVQCPICLEYPLCPQ----------ITSCGHI--------------------FCFPCILQYLLMGDEDYKGDCFKR 155 (685)
Q Consensus 106 ~~~~~~~CPICLe~~~~P~----------~t~CGHi--------------------FC~~CI~~~l~~~~~~~k~~~~~~ 155 (685)
..++.-.|+-|+.++.+|. +|.||-. +|-.|...|-....... ......
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRf-HAqp~a 91 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRF-HAQPVA 91 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTT-TCTTCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcC-cCCCCc
Confidence 3566778999996654432 4566643 59999999987543211 112368
Q ss_pred CCCccccc
Q 005653 156 CPLCFVMI 163 (685)
Q Consensus 156 CPlCr~~i 163 (685)
||.|.-.+
T Consensus 92 Cp~CGP~l 99 (657)
T 3ttc_A 92 CPECGPYL 99 (657)
T ss_dssp CTTTSCCE
T ss_pred CcccCccc
Confidence 99997654
No 105
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=21.10 E-value=40 Score=28.02 Aligned_cols=14 Identities=36% Similarity=1.013 Sum_probs=11.6
Q ss_pred cCCCcccHHHHHHH
Q 005653 127 SCGHIFCFPCILQY 140 (685)
Q Consensus 127 ~CGHiFC~~CI~~~ 140 (685)
.||+.||+.|-..|
T Consensus 48 ~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 48 QCHQTFCVRCKRQW 61 (86)
T ss_dssp TTCCEECSSSCSBC
T ss_pred CCCCccccccCCch
Confidence 59999999997654
No 106
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=20.20 E-value=59 Score=29.99 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=30.6
Q ss_pred CccccccCcCCCCcEEccCCCcccHHHHHHHHH--------cCCCCCCCCCcCCCCCccc
Q 005653 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLL--------MGDEDYKGDCFKRCPLCFV 161 (685)
Q Consensus 110 ~~~CPICLe~~~~P~~t~CGHiFC~~CI~~~l~--------~~~~~~k~~~~~~CPlCr~ 161 (685)
+..|-||.+-=.---.-.|-..||..||..-+. ... ....||.|..
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~------~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDEN------NQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTST------TCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCC------CCCEeecccC
Confidence 356999986432222347999999999987653 111 2478999964
No 107
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=20.08 E-value=1.5e+02 Score=25.19 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCccccccCcCCC-----CcE--EccCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCccccc
Q 005653 109 LSVQCPICLEYPL-----CPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (685)
Q Consensus 109 ~~~~CPICLe~~~-----~P~--~t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (685)
....|-||-+..- .+. .-.|+--.|.+|+.-=.+. ....||-|....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke--------G~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE--------GTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT--------SCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc--------cCccccccCCcc
Confidence 4568999997632 111 3468888999998654443 247999997754
Done!