BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005655
(685 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 31/220 (14%)
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGH 183
PR+ V+ +N +Y+ GG + + F+ LD +++W + L PS R
Sbjct: 46 PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW--VGLPPLPSARCLF 103
Query: 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV 243
+ KI V G L+ + + +D KW E+K P G
Sbjct: 104 GLGEVDDKIYVVAG--KDLQTEASLDSVLCYDPVAAKWSEVKNL-----PIKVYGHNVIS 156
Query: 244 YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303
+ ++ GG + DK + + I+ +P+ +W K + PR+ F +
Sbjct: 157 HNGMIYCLGGKTD----DKKCTNRVFIY------NPKKGDW---KDLAPMKTPRSMFGVA 203
Query: 304 VHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343
+HK + ++ GGV + + V F L ++W
Sbjct: 204 IHKGKIVIAGGVTEDGLSASV---------EAFDLKTNKW 234
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG---EFTSPNQERFHHYKDFW 159
++ Y+ +K +WK ++ +P RS K + I GG + S + E F
Sbjct: 177 VFIYNPKKGDWKDLAPMKTP--RSMFGVAIHKGKIVIAGGVTEDGLSASVEAF------- 227
Query: 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYY-----NDLYVF 214
DLKTN+WE + P RS +V + GGF E + + ND++ +
Sbjct: 228 --DLKTNKWEVMT--EFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283
Query: 215 DLDQFKW 221
+ D+ +W
Sbjct: 284 EDDKKEW 290
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/278 (19%), Positives = 105/278 (37%), Gaps = 34/278 (12%)
Query: 68 PRSNCSLNINPLKETELILYGGEFYNGNKTY--VYGDLYRYDVEKQEWKVISSPNSPPPR 125
P+++ SL KE ++ + GG FYN + + ++D EW + P P PR
Sbjct: 35 PKNHVSLVT---KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGMPPLPSPR 89
Query: 126 SAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRM 185
N +Y+ GG + + L K + + L P GH +
Sbjct: 90 CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL-----PYVVYGHTV 144
Query: 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQ 245
+ + + V GG + + N + V+D +F+W+E+ P + RS F V+
Sbjct: 145 LSHMDLVYVIGG---KGSDRKCLNKMCVYDPKKFEWKELAPM-----QTARSLFGATVHD 196
Query: 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305
+ + G + T ++++S+ W P R+ S+
Sbjct: 197 GRIIVAAGVTDTGLTSS---------AEVYSITDNKW-----APFEAFPQERSSLSLVSL 242
Query: 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343
GG +E + ++ LN+++ + + +W
Sbjct: 243 VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 52/152 (34%), Gaps = 22/152 (14%)
Query: 106 YDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG-EFTSPNQERFHHYKDFWMLDLK 164
Y+V K W P P PR + A + + +Y GG E + F Y D +
Sbjct: 75 YNVVKDSWYSKLGP--PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECY------DTR 126
Query: 165 TNQWEQLNLKGCPS---PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221
T W PS R H MV I V GG R N V+D W
Sbjct: 127 TESWHTK-----PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181
Query: 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG 253
E+ P R +D++F GG
Sbjct: 182 TELCPMI-----EARKNHGLVFVKDKIFAVGG 208
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 30/186 (16%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
RY+ E+ EW +++ + R V+ N L G F N R + + ++ +
Sbjct: 141 RYEPERDEWHLVAPMLT---RRIGVGVAVLNRLLYAVGGFDGTN--RLNSAECYYP---E 192
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
N+W + + RSG + + H I G YD ++ N + +D++ W +
Sbjct: 193 RNEWRMITAMN--TIRSGAGVCVL-HNCIYAAGGYDGQDQL---NSVERYDVETETWTFV 246
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
P RS V+Q +++ GGY D + DP T W
Sbjct: 247 APM-----KHRRSALGITVHQGRIYVLGGYDGHTFLDSVE-----------CYDPDTDTW 290
Query: 285 SKVKKI 290
S+V ++
Sbjct: 291 SEVTRM 296
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 30/186 (16%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
RY+ E+ EW +++ + R V+ N L G F N R + + ++ +
Sbjct: 142 RYEPERDEWHLVAPMLT---RRIGVGVAVLNRLLYAVGGFDGTN--RLNSAECYYP---E 193
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
N+W + + RSG + + H I G YD ++ N + +D++ W +
Sbjct: 194 RNEWRMITAMN--TIRSGAGVCVL-HNCIYAAGGYDGQDQL---NSVERYDVETETWTFV 247
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
P RS V+Q +++ GGY D + DP T W
Sbjct: 248 APM-----KHRRSALGITVHQGRIYVLGGYDGHTFLDSVE-----------CYDPDTDTW 291
Query: 285 SKVKKI 290
S+V ++
Sbjct: 292 SEVTRM 297
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 30/185 (16%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
RY+ E+ EW +++ + R V+ N L G F N R + + ++ +
Sbjct: 141 RYEPERDEWHLVAPXLT---RRIGVGVAVLNRLLYAVGGFDGTN--RLNSAECYYP---E 192
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
N+W + + RSG + + H I G YD ++ N + +D++ W +
Sbjct: 193 RNEWRXITAXN--TIRSGAGVCVL-HNCIYAAGGYDGQDQL---NSVERYDVETETWTFV 246
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
P RS V+Q +++ GGY D + DP T W
Sbjct: 247 APX-----KHRRSALGITVHQGRIYVLGGYDGHTFLDSVE-----------CYDPDTDTW 290
Query: 285 SKVKK 289
S+V +
Sbjct: 291 SEVTR 295
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 29/206 (14%)
Query: 116 ISSPNSPPPRSAHQ--AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173
+SS P R H +S N L + GG +P+Q D W+ D+KT +W +
Sbjct: 431 VSSSEVPVARMCHTFTTISRNNQLLLIGGR-KAPHQ----GLSDNWIFDMKTREWSM--I 483
Query: 174 KGCPSPRSGHRMV-LYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR---FG 229
K R H L +++ GG V + ++++ + ++++ P+ F
Sbjct: 484 KSLSHTRFRHSACSLPDGNVLILGG-------VTEGPAMLLYNVTEEIFKDVTPKDEFFQ 536
Query: 230 SMWPSPRSGFQFF-VYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288
+ S +G +F V + + L GG+ + + S+K II + + T + +K
Sbjct: 537 NSLVS--AGLEFDPVSKQGIILGGGFMDQTTV----SDKAIIFK--YDAENATEPITVIK 588
Query: 289 KIGMPPGPRAGFSMCVHKKRALLFGG 314
K+ P R G + R LL G
Sbjct: 589 KLQHPLFQRYGSQIKYITPRKLLIVG 614
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 30/186 (16%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
RY+ E+ EW +++ + R V+ N L G F N R + + ++ +
Sbjct: 134 RYEPERDEWHLVAPMLT---RRIGVGVAVLNRLLYAVGGFDGTN--RLNSAECYYP---E 185
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
N+W + + RSG + + H I G YD ++ N + +D++ W +
Sbjct: 186 RNEWRMITPMN--TIRSGAGVCVL-HNCIYAAGGYDGQDQL---NSVERYDVETETWTFV 239
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
P RS V+Q ++++ GGY D + DP + W
Sbjct: 240 APMR-----HHRSALGITVHQGKIYVLGGYDGHTFLDSVE-----------CYDPDSDTW 283
Query: 285 SKVKKI 290
S+V ++
Sbjct: 284 SEVTRM 289
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 30/186 (16%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
RY+ E+ EW +++ + R V+ N L G F N R + + ++ +
Sbjct: 135 RYEPERDEWHLVAPMLT---RRIGVGVAVLNRLLYAVGGFDGTN--RLNSAECYYP---E 186
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
N+W + + RSG + + H I G YD ++ N + +D++ W +
Sbjct: 187 RNEWRMITPMN--TIRSGAGVCVL-HNCIYAAGGYDGQDQL---NSVERYDVETETWTFV 240
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
P RS V+Q ++++ GGY D + DP + W
Sbjct: 241 APMR-----HHRSALGITVHQGKIYVLGGYDGHTFLDSVE-----------CYDPDSDTW 284
Query: 285 SKVKKI 290
S+V ++
Sbjct: 285 SEVTRM 290
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 85/233 (36%), Gaps = 29/233 (12%)
Query: 104 YRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHH-YKDFWM 160
Y+ D + ++ W +++ P A A N LY+FGG N E + D
Sbjct: 34 YKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGN-LYVFGG--IGKNSEGLTQVFNDVHK 90
Query: 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220
+ KTN W +L P +GH ++ K V GG + Y+ DL D
Sbjct: 91 YNPKTNSWVKLXSH-APXGXAGHVTFVHNGKAYVTGGVNQNIFN-GYFEDLNEAGKDSTA 148
Query: 221 WQEIKPR----------FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST--DK-----N 263
+I F S Q + Y E YG V DK
Sbjct: 149 IDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLING 208
Query: 264 QSEKGIIHSDLWSLD--PRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
+++ G+ ++ LD +W+K+ + P G GF+ +L+F G
Sbjct: 209 EAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI--SNDSLIFAG 259
>pdb|3OZH|A Chain A, Crystal Structure Of Beta-LactamaseD-Alanine
Carboxypeptidase From Yersinia Pestis
pdb|3RJU|A Chain A, Crystal Structure Of Beta-LactamaseD-Alanine
Carboxypeptidase From Yersinia Pestis Complexed With
Citrate
Length = 351
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 275 WSLDPRTWEWSKVKKIGMPPGPRAGFS 301
W W+W K+ K+ +PPG +A +S
Sbjct: 134 WPTKDNRWQWLKLAKVTVPPGVKAAYS 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,805,409
Number of Sequences: 62578
Number of extensions: 788965
Number of successful extensions: 1509
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 23
length of query: 685
length of database: 14,973,337
effective HSP length: 105
effective length of query: 580
effective length of database: 8,402,647
effective search space: 4873535260
effective search space used: 4873535260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)