Query 005655
Match_columns 685
No_of_seqs 465 out of 2831
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 11:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1230 Protein containing rep 100.0 9.4E-88 2E-92 689.1 32.0 480 1-510 1-492 (521)
2 KOG1230 Protein containing rep 100.0 2E-45 4.4E-50 377.6 26.0 273 117-500 59-348 (521)
3 PLN02153 epithiospecifier prot 100.0 8.2E-43 1.8E-47 376.2 35.9 281 51-348 6-293 (341)
4 PLN02193 nitrile-specifier pro 100.0 2.7E-42 5.9E-47 386.5 36.7 259 61-348 158-419 (470)
5 KOG4693 Uncharacterized conser 100.0 9.1E-40 2E-44 319.2 22.5 261 67-349 12-286 (392)
6 PLN02193 nitrile-specifier pro 100.0 4E-38 8.7E-43 352.9 35.3 297 68-502 110-420 (470)
7 KOG4441 Proteins containing BT 100.0 9.9E-39 2.1E-43 362.7 27.9 284 65-501 272-555 (571)
8 PLN02153 epithiospecifier prot 100.0 6.1E-37 1.3E-41 330.5 31.8 281 108-501 4-293 (341)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 9.6E-37 2.1E-41 329.6 30.2 258 63-348 2-307 (346)
10 TIGR03548 mutarot_permut cycli 100.0 1.9E-36 4.1E-41 324.2 31.3 249 67-348 2-288 (323)
11 PHA02713 hypothetical protein; 100.0 9.4E-37 2E-41 347.6 29.6 264 101-502 272-543 (557)
12 PRK14131 N-acetylneuraminic ac 100.0 1.1E-35 2.4E-40 324.6 32.0 311 54-497 14-373 (376)
13 PHA02713 hypothetical protein; 100.0 1.2E-35 2.6E-40 338.6 26.4 244 59-348 284-542 (557)
14 KOG4441 Proteins containing BT 100.0 1.6E-35 3.5E-40 336.4 25.3 241 61-348 315-555 (571)
15 KOG0379 Kelch repeat-containin 100.0 5.6E-34 1.2E-38 319.0 29.5 256 61-348 53-310 (482)
16 KOG4693 Uncharacterized conser 100.0 7.2E-35 1.6E-39 285.0 18.9 273 112-502 3-286 (392)
17 PHA03098 kelch-like protein; P 100.0 5E-34 1.1E-38 326.0 27.4 271 82-502 251-521 (534)
18 KOG4152 Host cell transcriptio 100.0 3.2E-34 6.9E-39 300.5 21.9 322 51-494 16-366 (830)
19 KOG0379 Kelch repeat-containin 100.0 3.1E-33 6.7E-38 313.0 26.0 258 118-503 54-312 (482)
20 PHA03098 kelch-like protein; P 100.0 8.5E-33 1.8E-37 315.9 29.0 238 69-350 285-522 (534)
21 TIGR03548 mutarot_permut cycli 100.0 6.8E-31 1.5E-35 281.3 25.9 235 59-317 53-314 (323)
22 PHA02790 Kelch-like protein; P 100.0 8.8E-31 1.9E-35 294.4 27.5 208 81-347 271-478 (480)
23 TIGR03547 muta_rot_YjhT mutatr 100.0 6.9E-30 1.5E-34 276.2 27.0 258 61-338 45-345 (346)
24 PHA02790 Kelch-like protein; P 100.0 5.2E-30 1.1E-34 288.1 26.3 211 130-499 267-477 (480)
25 PRK14131 N-acetylneuraminic ac 100.0 1.5E-29 3.3E-34 276.3 27.7 257 62-345 67-374 (376)
26 PF13422 DUF4110: Domain of un 100.0 3.7E-30 8E-35 220.2 7.5 88 588-677 2-91 (96)
27 KOG4152 Host cell transcriptio 100.0 7.4E-29 1.6E-33 260.3 17.9 216 111-348 17-247 (830)
28 KOG2437 Muskelin [Signal trans 99.8 1E-20 2.2E-25 199.3 3.9 264 64-348 256-543 (723)
29 COG3055 Uncharacterized protei 99.8 6E-17 1.3E-21 166.4 20.9 258 61-348 29-335 (381)
30 COG3055 Uncharacterized protei 99.6 1.6E-14 3.6E-19 148.6 18.3 254 65-339 79-374 (381)
31 KOG2437 Muskelin [Signal trans 99.6 7E-16 1.5E-20 163.1 4.1 208 110-340 238-472 (723)
32 PF13964 Kelch_6: Kelch motif 99.0 5.3E-10 1.1E-14 85.5 6.4 50 124-180 1-50 (50)
33 PF13964 Kelch_6: Kelch motif 99.0 7.2E-10 1.6E-14 84.7 5.8 50 179-236 1-50 (50)
34 PF13415 Kelch_3: Galactose ox 98.8 7.4E-09 1.6E-13 78.8 6.3 49 134-188 1-49 (49)
35 PF13415 Kelch_3: Galactose ox 98.8 1.5E-08 3.3E-13 77.0 6.3 49 81-133 1-49 (49)
36 PF03089 RAG2: Recombination a 98.8 6.4E-07 1.4E-11 90.3 19.4 234 55-311 8-280 (337)
37 PF07646 Kelch_2: Kelch motif; 98.7 2.5E-08 5.3E-13 75.9 5.9 48 179-227 1-48 (49)
38 PF01344 Kelch_1: Kelch motif; 98.7 2.3E-08 5E-13 75.1 5.5 46 179-227 1-46 (47)
39 PF13854 Kelch_5: Kelch motif 98.7 1.3E-08 2.8E-13 74.8 3.8 41 450-492 1-41 (42)
40 PLN02772 guanylate kinase 98.7 8E-08 1.7E-12 103.3 10.7 88 177-282 22-110 (398)
41 PF13418 Kelch_4: Galactose ox 98.7 2.7E-08 5.8E-13 75.6 5.1 45 124-173 1-46 (49)
42 PF13418 Kelch_4: Galactose ox 98.7 3.3E-08 7.1E-13 75.1 5.5 46 179-227 1-47 (49)
43 PF01344 Kelch_1: Kelch motif; 98.6 4.5E-08 9.8E-13 73.5 5.3 45 124-173 1-45 (47)
44 PLN02772 guanylate kinase 98.6 1.5E-07 3.2E-12 101.3 10.8 87 233-340 22-109 (398)
45 PF07646 Kelch_2: Kelch motif; 98.6 1.2E-07 2.6E-12 72.1 6.5 46 124-173 1-47 (49)
46 PF13854 Kelch_5: Kelch motif 98.6 1.1E-07 2.4E-12 69.8 5.6 42 176-219 1-42 (42)
47 PF03089 RAG2: Recombination a 98.5 4.3E-06 9.3E-11 84.5 15.6 129 121-257 19-176 (337)
48 TIGR01640 F_box_assoc_1 F-box 98.3 0.00011 2.4E-09 74.8 22.6 204 101-341 14-230 (230)
49 smart00612 Kelch Kelch domain. 98.2 1.4E-06 3.1E-11 64.8 4.7 47 136-190 1-47 (47)
50 smart00612 Kelch Kelch domain. 98.2 2.3E-06 4.9E-11 63.7 4.4 47 191-246 1-47 (47)
51 PF07250 Glyoxal_oxid_N: Glyox 98.0 0.00029 6.3E-09 71.9 16.8 150 103-289 48-207 (243)
52 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.00045 9.8E-09 70.5 15.1 152 155-350 45-209 (243)
53 PRK11138 outer membrane biogen 97.5 0.018 4E-07 63.5 23.9 193 81-345 69-282 (394)
54 PRK11138 outer membrane biogen 97.5 0.029 6.3E-07 61.9 25.4 169 102-341 171-355 (394)
55 PF13360 PQQ_2: PQQ-like domai 97.5 0.13 2.7E-06 51.9 27.0 187 81-344 36-237 (238)
56 TIGR03300 assembly_YfgL outer 97.1 0.21 4.5E-06 54.6 26.0 169 102-341 156-340 (377)
57 TIGR03300 assembly_YfgL outer 97.0 0.14 3E-06 56.0 23.5 188 81-345 65-267 (377)
58 TIGR01640 F_box_assoc_1 F-box 97.0 0.051 1.1E-06 55.2 18.5 164 156-348 14-186 (230)
59 PF13360 PQQ_2: PQQ-like domai 97.0 0.21 4.6E-06 50.3 22.9 175 101-344 3-198 (238)
60 KOG2055 WD40 repeat protein [G 97.0 0.043 9.2E-07 59.4 17.4 194 63-315 208-407 (514)
61 PF08450 SGL: SMP-30/Gluconola 96.6 0.98 2.1E-05 46.1 24.6 197 81-344 11-218 (246)
62 PF07893 DUF1668: Protein of u 96.6 0.095 2.1E-06 56.8 17.1 127 133-290 75-217 (342)
63 PF12768 Rax2: Cortical protei 96.6 0.16 3.6E-06 53.2 18.2 179 139-350 2-195 (281)
64 KOG2055 WD40 repeat protein [G 96.0 0.1 2.2E-06 56.7 12.8 128 102-257 281-410 (514)
65 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.7 5.3 0.00011 46.0 26.5 119 81-226 69-200 (527)
66 cd00094 HX Hemopexin-like repe 95.6 0.98 2.1E-05 44.7 17.8 153 129-342 11-178 (194)
67 PF07893 DUF1668: Protein of u 95.5 0.35 7.5E-06 52.4 15.2 127 186-348 73-216 (342)
68 cd00094 HX Hemopexin-like repe 95.5 1.1 2.5E-05 44.2 17.7 149 81-283 16-178 (194)
69 PRK05137 tolB translocation pr 95.4 3.5 7.7E-05 46.1 23.5 194 101-347 226-420 (435)
70 PF12768 Rax2: Cortical protei 95.3 0.42 9.1E-06 50.2 14.5 125 85-226 1-130 (281)
71 PRK04792 tolB translocation pr 95.3 3.3 7.2E-05 46.6 22.9 145 101-289 242-391 (448)
72 PRK04792 tolB translocation pr 95.2 2 4.2E-05 48.4 20.7 145 156-347 242-390 (448)
73 PRK04922 tolB translocation pr 95.2 2.5 5.4E-05 47.2 21.5 185 101-341 228-413 (433)
74 TIGR03866 PQQ_ABC_repeats PQQ- 95.1 3.5 7.6E-05 42.3 21.2 101 83-220 2-106 (300)
75 TIGR02800 propeller_TolB tol-p 95.1 3.6 7.8E-05 45.3 22.4 146 101-289 214-363 (417)
76 PRK00178 tolB translocation pr 95.0 4.4 9.5E-05 45.1 22.8 182 101-340 223-407 (430)
77 cd00200 WD40 WD40 domain, foun 94.9 4.5 9.8E-05 40.1 21.3 111 73-220 14-126 (289)
78 cd00216 PQQ_DH Dehydrogenases 94.9 9.1 0.0002 43.6 25.0 127 73-225 56-193 (488)
79 TIGR02800 propeller_TolB tol-p 94.7 2.5 5.5E-05 46.5 19.7 146 156-347 214-362 (417)
80 cd00200 WD40 WD40 domain, foun 94.6 5.2 0.00011 39.6 20.8 69 73-167 56-126 (289)
81 PRK03629 tolB translocation pr 94.4 9.7 0.00021 42.6 23.4 167 101-315 223-393 (429)
82 PRK13684 Ycf48-like protein; P 94.3 8.9 0.00019 41.4 22.3 155 111-315 119-279 (334)
83 PRK05137 tolB translocation pr 94.2 4.9 0.00011 44.9 20.5 146 156-346 226-373 (435)
84 PRK00178 tolB translocation pr 94.1 5.3 0.00011 44.5 20.8 146 156-348 223-372 (430)
85 TIGR03866 PQQ_ABC_repeats PQQ- 94.1 7.8 0.00017 39.7 23.0 110 73-220 35-148 (300)
86 PRK04922 tolB translocation pr 94.1 4.7 0.0001 45.1 20.1 144 156-347 228-376 (433)
87 PRK11028 6-phosphogluconolacto 94.0 10 0.00022 40.4 22.6 114 72-219 38-158 (330)
88 PRK03629 tolB translocation pr 93.6 8.7 0.00019 42.9 21.2 147 156-348 223-372 (429)
89 PRK02889 tolB translocation pr 93.4 8.2 0.00018 43.1 20.5 145 156-347 220-368 (427)
90 PF03178 CPSF_A: CPSF A subuni 93.4 2.8 6E-05 44.8 16.1 142 82-253 42-191 (321)
91 PRK04043 tolB translocation pr 93.0 13 0.00029 41.4 21.2 194 101-348 213-409 (419)
92 PF08450 SGL: SMP-30/Gluconola 92.8 12 0.00027 38.0 19.3 163 81-289 51-222 (246)
93 PLN02919 haloacid dehalogenase 92.8 34 0.00074 42.9 26.4 159 134-342 694-891 (1057)
94 PF05096 Glu_cyclase_2: Glutam 92.6 3.8 8.3E-05 42.4 14.9 109 185-341 50-159 (264)
95 PF03178 CPSF_A: CPSF A subuni 92.4 5 0.00011 42.8 16.5 142 135-315 42-191 (321)
96 PF05096 Glu_cyclase_2: Glutam 92.3 5.8 0.00013 41.1 15.7 107 133-283 54-160 (264)
97 PRK11028 6-phosphogluconolacto 92.3 18 0.00039 38.5 22.3 128 101-251 102-245 (330)
98 PF02897 Peptidase_S9_N: Proly 92.0 22 0.00048 39.2 21.6 147 156-348 252-413 (414)
99 PRK13684 Ycf48-like protein; P 92.0 20 0.00044 38.6 20.8 182 71-314 48-233 (334)
100 PF12217 End_beta_propel: Cata 91.6 18 0.00039 37.1 19.4 228 70-316 76-334 (367)
101 PLN00181 protein SPA1-RELATED; 91.1 16 0.00036 44.2 20.7 93 156-282 555-650 (793)
102 PTZ00421 coronin; Provisional 91.1 33 0.00071 39.2 22.8 62 135-220 138-201 (493)
103 KOG0310 Conserved WD40 repeat- 90.7 18 0.00039 40.0 17.9 129 132-317 163-301 (487)
104 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.7 21 0.00045 41.1 19.9 123 129-287 64-198 (527)
105 PRK02889 tolB translocation pr 90.3 34 0.00074 38.1 23.7 182 101-340 220-404 (427)
106 PF02897 Peptidase_S9_N: Proly 89.7 35 0.00076 37.6 20.3 149 100-289 251-413 (414)
107 KOG0649 WD40 repeat protein [G 89.4 23 0.00051 36.0 16.2 145 65-252 112-263 (325)
108 PF02191 OLF: Olfactomedin-lik 89.3 25 0.00054 36.3 17.3 191 81-313 30-237 (250)
109 PF10282 Lactonase: Lactonase, 89.1 22 0.00048 38.4 17.7 173 69-289 144-333 (345)
110 PRK04043 tolB translocation pr 89.1 35 0.00076 38.1 19.6 153 156-348 213-366 (419)
111 PRK01742 tolB translocation pr 88.7 44 0.00096 37.2 20.7 159 102-315 229-391 (429)
112 PTZ00421 coronin; Provisional 88.6 40 0.00086 38.5 19.9 95 102-219 149-247 (493)
113 PF02191 OLF: Olfactomedin-lik 88.5 12 0.00025 38.8 14.2 171 135-348 31-212 (250)
114 cd00216 PQQ_DH Dehydrogenases 88.3 29 0.00063 39.5 18.8 128 129-288 56-193 (488)
115 PF10282 Lactonase: Lactonase, 88.3 41 0.00088 36.3 19.4 194 103-349 17-234 (345)
116 COG4257 Vgb Streptogramin lyas 87.9 15 0.00033 38.1 13.9 137 105-288 172-313 (353)
117 PF10446 DUF2457: Protein of u 87.4 0.15 3.3E-06 55.3 -0.5 9 479-487 25-33 (458)
118 PF08268 FBA_3: F-box associat 87.2 12 0.00027 34.1 12.2 87 186-289 2-89 (129)
119 PRK01742 tolB translocation pr 86.8 49 0.0011 36.9 19.2 139 156-347 228-369 (429)
120 PLN00181 protein SPA1-RELATED; 86.7 58 0.0013 39.5 21.1 89 102-219 556-650 (793)
121 PLN00033 photosystem II stabil 86.2 60 0.0013 36.0 23.3 49 110-171 165-214 (398)
122 TIGR03074 PQQ_membr_DH membran 84.7 1E+02 0.0022 37.3 25.8 21 268-288 410-432 (764)
123 COG4257 Vgb Streptogramin lyas 84.2 57 0.0012 34.0 18.9 187 102-352 125-318 (353)
124 PLN00033 photosystem II stabil 84.0 75 0.0016 35.2 27.5 121 70-224 89-214 (398)
125 COG4946 Uncharacterized protei 83.4 70 0.0015 35.7 17.1 173 155-351 106-307 (668)
126 PF14583 Pectate_lyase22: Olig 83.3 42 0.00091 36.8 15.6 211 81-341 46-274 (386)
127 KOG2321 WD40 repeat protein [G 82.1 31 0.00066 39.2 14.1 76 177-283 131-208 (703)
128 TIGR02658 TTQ_MADH_Hv methylam 81.8 84 0.0018 34.2 23.6 226 76-342 53-333 (352)
129 PF08268 FBA_3: F-box associat 81.8 26 0.00056 31.9 11.8 86 132-227 3-90 (129)
130 KOG4378 Nuclear protein COP1 [ 81.7 24 0.00052 39.3 12.9 51 210-283 188-242 (673)
131 PF09910 DUF2139: Uncharacteri 81.2 77 0.0017 33.4 20.0 104 99-221 76-185 (339)
132 KOG0310 Conserved WD40 repeat- 80.1 30 0.00064 38.4 13.0 129 81-257 165-302 (487)
133 KOG2321 WD40 repeat protein [G 78.2 32 0.00069 39.1 12.7 75 123-220 132-208 (703)
134 KOG0296 Angio-associated migra 78.0 1.1E+02 0.0023 33.2 18.0 108 71-219 67-180 (399)
135 KOG0646 WD40 repeat protein [G 76.9 48 0.0011 36.7 13.4 25 632-656 445-469 (476)
136 PRK10115 protease 2; Provision 76.8 1.7E+02 0.0037 34.9 25.1 194 101-348 199-403 (686)
137 PF06524 NOA36: NOA36 protein; 76.4 1.7 3.7E-05 44.0 2.2 21 178-198 121-141 (314)
138 COG1520 FOG: WD40-like repeat 76.3 1.2E+02 0.0026 32.9 22.6 188 102-347 79-278 (370)
139 KOG0772 Uncharacterized conser 76.3 1.1E+02 0.0025 34.5 16.0 136 166-340 303-446 (641)
140 PLN03215 ascorbic acid mannose 75.6 1.3E+02 0.0028 33.0 16.4 112 165-291 189-305 (373)
141 PTZ00420 coronin; Provisional 74.5 1.8E+02 0.0038 34.0 20.2 94 102-218 149-249 (568)
142 PLN03215 ascorbic acid mannose 74.4 1.4E+02 0.003 32.7 16.8 101 110-227 189-304 (373)
143 PF02239 Cytochrom_D1: Cytochr 73.9 1.4E+02 0.0031 32.6 16.7 192 72-315 39-238 (369)
144 COG2706 3-carboxymuconate cycl 73.1 1.4E+02 0.003 32.1 18.4 154 101-290 167-333 (346)
145 KOG0296 Angio-associated migra 72.5 1.5E+02 0.0032 32.1 16.3 144 134-341 75-222 (399)
146 KOG0316 Conserved WD40 repeat- 71.8 1.2E+02 0.0027 30.9 13.9 92 102-219 82-175 (307)
147 smart00284 OLF Olfactomedin-li 71.7 1.3E+02 0.0028 31.2 16.7 165 134-344 34-213 (255)
148 PLN02919 haloacid dehalogenase 70.6 2.9E+02 0.0064 34.8 30.3 209 81-348 579-842 (1057)
149 PF06433 Me-amine-dh_H: Methyl 69.7 1.3E+02 0.0029 32.4 14.5 109 74-195 41-162 (342)
150 KOG0772 Uncharacterized conser 69.6 2E+02 0.0043 32.7 15.9 26 480-505 445-470 (641)
151 PTZ00420 coronin; Provisional 69.0 2.3E+02 0.005 33.0 21.1 49 157-220 149-200 (568)
152 KOG0291 WD40-repeat-containing 67.8 2.6E+02 0.0057 33.2 21.4 156 128-345 310-472 (893)
153 KOG0266 WD40 repeat-containing 67.2 2.2E+02 0.0048 32.0 20.5 72 128-221 250-322 (456)
154 PF14870 PSII_BNR: Photosynthe 66.7 1.8E+02 0.0039 30.9 20.7 174 81-316 71-253 (302)
155 KOG0315 G-protein beta subunit 65.2 1.7E+02 0.0038 30.1 18.3 125 101-256 61-188 (311)
156 PRK01029 tolB translocation pr 63.7 2.5E+02 0.0053 31.4 21.0 61 272-348 351-412 (428)
157 TIGR03074 PQQ_membr_DH membran 63.1 1.6E+02 0.0034 35.7 15.1 32 184-225 189-222 (764)
158 PF13088 BNR_2: BNR repeat-lik 63.0 1.8E+02 0.004 29.6 22.5 212 71-311 50-275 (275)
159 PF14870 PSII_BNR: Photosynthe 62.7 2.2E+02 0.0047 30.4 21.5 173 81-312 27-203 (302)
160 KOG3881 Uncharacterized conser 62.0 1.3E+02 0.0027 32.9 12.4 156 135-341 161-322 (412)
161 KOG0526 Nucleosome-binding fac 61.1 33 0.00071 38.6 8.1 33 107-145 47-79 (615)
162 KOG0291 WD40-repeat-containing 61.0 3.5E+02 0.0076 32.2 20.3 110 134-287 361-473 (893)
163 COG4946 Uncharacterized protei 59.0 3.1E+02 0.0066 30.9 16.7 141 101-288 287-439 (668)
164 KOG1517 Guanine nucleotide bin 58.4 2.8E+02 0.0061 34.4 15.4 193 64-317 1160-1372(1387)
165 PF13088 BNR_2: BNR repeat-lik 58.3 2.2E+02 0.0048 29.0 14.0 150 81-250 118-275 (275)
166 COG1520 FOG: WD40-like repeat 57.0 2.9E+02 0.0062 30.0 20.2 99 102-224 122-226 (370)
167 PF15525 DUF4652: Domain of un 56.9 1.3E+02 0.0028 29.6 10.5 69 98-173 85-157 (200)
168 COG4880 Secreted protein conta 55.4 3.1E+02 0.0066 30.6 14.0 58 98-167 403-460 (603)
169 COG3823 Glutamine cyclotransfe 55.2 2.4E+02 0.0051 28.5 13.4 106 81-219 55-160 (262)
170 KOG2048 WD40 repeat protein [G 54.7 2.3E+02 0.0049 33.1 13.5 128 63-225 422-559 (691)
171 KOG0643 Translation initiation 54.3 2.5E+02 0.0053 29.4 12.4 126 100-256 119-254 (327)
172 KOG1832 HIV-1 Vpr-binding prot 51.4 8.9 0.00019 45.4 2.0 23 37-59 1012-1034(1516)
173 KOG3881 Uncharacterized conser 51.2 2.2E+02 0.0047 31.2 12.0 96 154-281 224-321 (412)
174 KOG1832 HIV-1 Vpr-binding prot 50.4 8.7 0.00019 45.5 1.7 8 309-316 1268-1275(1516)
175 PF15525 DUF4652: Domain of un 50.0 2E+02 0.0044 28.3 10.6 70 154-227 86-158 (200)
176 PRK10115 protease 2; Provision 49.9 5.2E+02 0.011 30.9 25.2 150 156-347 199-354 (686)
177 KOG2048 WD40 repeat protein [G 49.5 3.9E+02 0.0085 31.3 14.3 127 69-227 383-515 (691)
178 KOG0943 Predicted ubiquitin-pr 49.3 13 0.00028 45.4 2.9 23 65-88 1087-1109(3015)
179 KOG0301 Phospholipase A2-activ 49.0 5.1E+02 0.011 30.5 15.3 36 294-344 258-293 (745)
180 KOG0289 mRNA splicing factor [ 47.5 3.3E+02 0.0071 30.3 12.7 17 274-290 456-472 (506)
181 KOG0279 G protein beta subunit 47.1 3.7E+02 0.0079 28.3 13.1 98 134-257 203-305 (315)
182 KOG1036 Mitotic spindle checkp 46.9 3.8E+02 0.0083 28.4 16.2 89 102-218 36-125 (323)
183 KOG0316 Conserved WD40 repeat- 46.5 3.5E+02 0.0075 27.8 14.3 84 156-257 81-166 (307)
184 KOG1036 Mitotic spindle checkp 46.4 3.9E+02 0.0084 28.4 13.6 91 101-219 75-165 (323)
185 PF11134 Phage_stabilise: Phag 46.3 3.1E+02 0.0067 30.6 12.5 14 208-221 306-319 (469)
186 KOG0266 WD40 repeat-containing 45.6 4.8E+02 0.01 29.3 20.3 96 156-284 225-322 (456)
187 KOG0289 mRNA splicing factor [ 44.8 4.8E+02 0.011 29.0 14.1 58 158-227 413-472 (506)
188 PF02239 Cytochrom_D1: Cytochr 44.6 4.6E+02 0.0099 28.7 19.4 184 101-346 16-209 (369)
189 KOG0649 WD40 repeat protein [G 44.4 3.8E+02 0.0082 27.7 15.5 91 110-224 98-193 (325)
190 KOG1446 Histone H3 (Lys4) meth 43.8 4.2E+02 0.0092 28.1 17.2 34 216-257 185-220 (311)
191 COG0823 TolB Periplasmic compo 42.6 5.3E+02 0.011 28.9 18.3 107 156-290 262-369 (425)
192 KOG0943 Predicted ubiquitin-pr 42.5 14 0.00031 45.0 1.9 7 216-222 1242-1248(3015)
193 KOG3130 Uncharacterized conser 41.6 13 0.00029 40.0 1.4 9 600-608 364-372 (514)
194 PF11134 Phage_stabilise: Phag 41.3 5.5E+02 0.012 28.7 19.2 20 177-198 182-201 (469)
195 PF12217 End_beta_propel: Cata 40.3 4.5E+02 0.0097 27.4 14.1 167 127-316 77-259 (367)
196 PF13570 PQQ_3: PQQ-like domai 40.1 57 0.0012 22.9 4.1 27 299-340 14-40 (40)
197 COG5406 Nucleosome binding fac 39.9 22 0.00049 40.6 2.8 29 81-110 270-298 (1001)
198 PF08229 SHR3_chaperone: ER me 39.8 26 0.00056 34.7 2.9 19 640-658 153-171 (196)
199 KOG4649 PQQ (pyrrolo-quinoline 39.6 3.8E+02 0.0082 28.0 11.1 55 209-288 33-91 (354)
200 COG5593 Nucleic-acid-binding p 39.5 12 0.00026 42.0 0.6 17 669-685 788-804 (821)
201 PF08229 SHR3_chaperone: ER me 39.5 25 0.00054 34.8 2.8 26 650-675 166-191 (196)
202 KOG0286 G-protein beta subunit 37.5 5.3E+02 0.011 27.4 20.6 38 274-314 253-292 (343)
203 KOG0305 Anaphase promoting com 37.4 5.2E+02 0.011 29.4 13.0 80 102-199 198-279 (484)
204 KOG0281 Beta-TrCP (transducin 37.0 2.3E+02 0.0051 30.5 9.5 49 274-341 342-390 (499)
205 TIGR02658 TTQ_MADH_Hv methylam 36.9 5.9E+02 0.013 27.8 15.7 121 135-286 13-142 (352)
206 COG5184 ATS1 Alpha-tubulin sup 35.8 3.4E+02 0.0074 30.5 11.0 37 105-141 90-129 (476)
207 KOG4649 PQQ (pyrrolo-quinoline 35.8 5.3E+02 0.012 26.9 13.2 91 154-282 31-125 (354)
208 KOG1538 Uncharacterized conser 35.1 5.9E+02 0.013 30.1 12.7 60 70-144 14-74 (1081)
209 KOG3064 RNA-binding nuclear pr 35.0 19 0.00041 36.7 1.2 20 233-252 44-64 (303)
210 COG0823 TolB Periplasmic compo 34.9 3.9E+02 0.0084 29.9 11.6 108 101-229 262-371 (425)
211 KOG3637 Vitronectin receptor, 34.6 4.9E+02 0.011 32.7 13.4 102 155-257 295-426 (1030)
212 COG3823 Glutamine cyclotransfe 34.6 2.7E+02 0.0058 28.1 8.9 101 183-315 49-149 (262)
213 KOG1332 Vesicle coat complex C 34.6 5.4E+02 0.012 26.6 12.9 53 280-348 243-296 (299)
214 PF03066 Nucleoplasmin: Nucleo 34.5 13 0.00028 35.2 0.0 6 310-315 5-10 (149)
215 COG5129 MAK16 Nuclear protein 34.3 20 0.00043 35.6 1.2 12 504-515 231-242 (303)
216 KOG0640 mRNA cleavage stimulat 33.6 3.4E+02 0.0075 28.9 9.9 71 73-168 221-295 (430)
217 PF09910 DUF2139: Uncharacteri 32.8 6.3E+02 0.014 26.9 15.4 102 74-195 111-219 (339)
218 PF04147 Nop14: Nop14-like fam 32.6 26 0.00057 42.7 2.2 38 603-640 465-505 (840)
219 PTZ00415 transmission-blocking 32.5 25 0.00054 44.8 1.8 9 306-314 71-79 (2849)
220 KOG0305 Anaphase promoting com 32.4 8E+02 0.017 28.0 14.0 97 134-257 355-454 (484)
221 KOG4364 Chromatin assembly fac 31.8 30 0.00064 39.9 2.2 6 506-511 526-531 (811)
222 KOG0641 WD40 repeat protein [G 30.8 5.8E+02 0.013 25.9 18.7 196 73-345 37-267 (350)
223 smart00284 OLF Olfactomedin-li 30.6 6.3E+02 0.014 26.2 16.9 155 66-252 71-242 (255)
224 KOG1565 Gelatinase A and relat 30.6 4.6E+02 0.01 29.8 11.4 64 133-220 343-412 (469)
225 KOG1523 Actin-related protein 30.6 3.5E+02 0.0075 29.0 9.5 103 101-226 32-141 (361)
226 KOG0293 WD40 repeat-containing 30.4 7.9E+02 0.017 27.3 12.5 61 134-220 323-387 (519)
227 PF02724 CDC45: CDC45-like pro 30.1 57 0.0012 38.4 4.3 9 650-658 268-276 (622)
228 PF05262 Borrelia_P83: Borreli 29.7 2.5E+02 0.0054 32.0 8.9 46 206-257 372-417 (489)
229 KOG4326 Mitochondrial F1F0-ATP 29.2 45 0.00097 27.1 2.2 23 639-661 28-50 (81)
230 COG4880 Secreted protein conta 28.0 1.2E+02 0.0027 33.5 5.9 120 71-225 472-598 (603)
231 PTZ00415 transmission-blocking 28.0 34 0.00074 43.7 2.0 10 467-476 116-125 (2849)
232 KOG3241 Uncharacterized conser 27.3 44 0.00096 32.1 2.2 8 450-457 164-171 (227)
233 PF07734 FBA_1: F-box associat 27.2 5.3E+02 0.012 24.3 14.0 88 186-291 2-94 (164)
234 KOG0319 WD40-repeat-containing 27.1 1.1E+03 0.024 28.0 13.9 31 73-114 110-140 (775)
235 COG2706 3-carboxymuconate cycl 26.9 8.3E+02 0.018 26.4 22.2 173 81-295 51-238 (346)
236 PF02724 CDC45: CDC45-like pro 26.5 76 0.0016 37.4 4.5 7 653-659 264-270 (622)
237 KOG0263 Transcription initiati 26.4 6.1E+02 0.013 30.1 11.4 11 306-316 630-640 (707)
238 KOG0272 U4/U6 small nuclear ri 25.7 9.6E+02 0.021 26.7 12.3 143 72-257 307-453 (459)
239 KOG0318 WD40 repeat stress pro 25.1 7.8E+02 0.017 28.2 11.4 113 71-217 446-560 (603)
240 KOG0270 WD40 repeat-containing 25.1 1E+03 0.022 26.7 14.9 217 74-354 131-378 (463)
241 PF05262 Borrelia_P83: Borreli 24.7 7.7E+02 0.017 28.2 11.7 45 99-146 373-417 (489)
242 KOG0299 U3 snoRNP-associated p 24.7 1E+03 0.022 26.7 20.2 139 70-257 202-349 (479)
243 KOG0308 Conserved WD40 repeat- 24.7 2.3E+02 0.005 33.0 7.5 76 72-167 120-204 (735)
244 PF06433 Me-amine-dh_H: Methyl 23.6 9.5E+02 0.021 26.1 11.6 152 135-312 3-162 (342)
245 KOG1189 Global transcriptional 23.6 64 0.0014 38.0 3.0 8 464-471 802-809 (960)
246 PF03066 Nucleoplasmin: Nucleo 23.6 27 0.00058 33.1 0.0 8 464-471 97-104 (149)
247 PF03115 Astro_capsid: Astrovi 23.3 27 0.00059 41.8 0.0 13 329-341 534-546 (787)
248 KOG1189 Global transcriptional 23.1 50 0.0011 38.9 2.0 6 103-108 250-255 (960)
249 KOG4133 tRNA splicing endonucl 23.0 85 0.0018 32.1 3.4 59 624-682 65-125 (290)
250 PHA02579 7 baseplate wedge sub 23.0 1.3E+03 0.028 27.9 12.9 22 177-198 303-324 (1030)
251 PRK01029 tolB translocation pr 22.6 1.1E+03 0.023 26.2 17.8 62 209-289 351-412 (428)
252 KOG1332 Vesicle coat complex C 21.9 9.1E+02 0.02 25.1 10.4 55 162-226 241-296 (299)
253 PF06552 TOM20_plant: Plant sp 21.4 91 0.002 30.6 3.1 71 603-681 91-161 (186)
254 KOG1645 RING-finger-containing 20.8 5.3E+02 0.011 28.5 8.9 218 68-312 235-458 (463)
No 1
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=9.4e-88 Score=689.10 Aligned_cols=480 Identities=45% Similarity=0.764 Sum_probs=388.5
Q ss_pred CCCCCCC--CCCCcchhHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhhceeEEEeecCCCCCCCCcceEEEEec
Q 005655 1 MGKKNKK--AGKGKEKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINP 78 (685)
Q Consensus 1 m~k~~k~--~~~~~~k~~~k~~k~~~k~~~k~~~~~~~~edi~~~l~~~~~~~~~~~~~~~~~~~~~P~~R~~~s~~~~p 78 (685)
||||.|| ++++++|+++|++||..++.|| ++++.|+..|...++..+++.-..+....+++|+||.+++++++|
T Consensus 1 MgKK~Kk~kkgk~aek~a~K~dkK~akr~kk----l~~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nP 76 (521)
T KOG1230|consen 1 MGKKNKKDKKGKGAEKTAAKQDKKFAKRKKK----LNEELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANP 76 (521)
T ss_pred CCccccCcccccchhhhHHHHHHHHHhhhhh----cCcccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeecc
Confidence 9998774 5666688888888877766644 466666677777788887777566666889999999999999999
Q ss_pred cCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC-CEEEEEcCccCCCCCccccccCe
Q 005655 79 LKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 79 ~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
.+ ++||||||++++|.++++||+||+||+.+++|+++.+++.|+||++|++|++. |.+|||||++.+++|.+|+||.|
T Consensus 77 ek-eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD 155 (521)
T KOG1230|consen 77 EK-EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKD 155 (521)
T ss_pred Cc-ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhh
Confidence 87 69999999999999999999999999999999999999999999999999996 89999999999999999999999
Q ss_pred EEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcc
Q 005655 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (685)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs 237 (685)
+|+||+.+++|+++...|.|+||+||+|++|+++|+|||||+++.+++.|+||||+||+.+++|+.+.+. +..|.||+
T Consensus 156 ~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps--ga~PtpRS 233 (521)
T KOG1230|consen 156 LWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS--GAGPTPRS 233 (521)
T ss_pred eeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC--CCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 55899999
Q ss_pred ceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC-----ceeEEeecCCCCCCCcceeEEEEE-CCeEE
Q 005655 238 GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-----WEWSKVKKIGMPPGPRAGFSMCVH-KKRAL 310 (685)
Q Consensus 238 ~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-----~~W~~~~~~g~~P~~R~g~s~~~~-~~~iy 310 (685)
||++++. .+.|||+|||++. ..++...+|..|+|+|.|+|.+ +.|+++.+.|..|+||+|++++++ +++.|
T Consensus 234 Gcq~~vtpqg~i~vyGGYsK~--~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal 311 (521)
T KOG1230|consen 234 GCQFSVTPQGGIVVYGGYSKQ--RVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKAL 311 (521)
T ss_pred cceEEecCCCcEEEEcchhHh--hhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceE
Confidence 9999999 9999999999988 6888999999999999999988 899999999999999999999999 56999
Q ss_pred EecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccch
Q 005655 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDE 390 (685)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (685)
+|||+++.++.++++++.|+||||.||+..|+|+...+.+.++.... +|..++...+.+.+. -...+ .-|-
T Consensus 312 ~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~--~r~~~Kd~~k~~~~~----~~G~~---tkd~ 382 (521)
T KOG1230|consen 312 FFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKSPATS--RRRSRKDQEKELQRP----TVGPN---TKDL 382 (521)
T ss_pred EecceecccccchhhhhhhhhhhhheecccchhhHhhhccCCCCccc--cccccccccccccCc----ccCCC---cccc
Confidence 99999999999999999999999999999999999888666554332 222223333322211 00000 0000
Q ss_pred hhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEc
Q 005655 391 NAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYG 470 (685)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~G 470 (685)
+... ++.++.-....+.+..+.........+..+.. ........+.--|+||.++.++|..++|||+|
T Consensus 383 e~~~----------v~k~v~~~~d~l~i~v~v~~~g~~~~p~s~~e--~s~~~~~e~~~~~~pr~d~~~~v~~G~~~i~g 450 (521)
T KOG1230|consen 383 EVQA----------VDKAVCPTTDSLFIYVGVWEPGEADYPESEDE--ASREGDREPDEGEFPRMDDELSVKVGVLYIGG 450 (521)
T ss_pred ccee----------cceeeeecCCceEEEeecCCCCCCCCcccccc--cccccCCCCCCCCCccCCCccCcccceEEecC
Confidence 0000 01111111112222222111122222221111 11111111222699999999999999999999
Q ss_pred CeeeccCeeeeeecccccccCCCCccEEeccCCh--hhhhhc
Q 005655 471 GMMEINDQEITLDDLYSLNLSKLDEWKCIIPASE--SEWVEA 510 (685)
Q Consensus 471 G~~e~g~re~tl~D~y~ldL~kld~w~~~~~~~~--~~w~~~ 510 (685)
|+|+.+|++.||.|||+|||+++..|++|.+++. .||.+.
T Consensus 451 Gi~ee~d~q~tl~dfyal~~hr~~~~K~L~~~sfe~~E~re~ 492 (521)
T KOG1230|consen 451 GIFEERDWQPTLRDFYALDLHRNEKGKQLKTKSFELCEWRER 492 (521)
T ss_pred CCcccccccchHHHHhhhhhhhhhhhhhhccCCchhhhhhhh
Confidence 9999999999999999999999999999999876 589754
No 2
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=2e-45 Score=377.64 Aligned_cols=273 Identities=27% Similarity=0.575 Sum_probs=230.0
Q ss_pred cCCCCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEEC-CEEE
Q 005655 117 SSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK-HKII 193 (685)
Q Consensus 117 ~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~-~~ly 193 (685)
.+..+|.||++.++++.. +.|++|||++.+... .+.||++|.||+.+++|..+.....|.||++|.+|++. |.||
T Consensus 59 ~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqk--T~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~ 136 (521)
T KOG1230|consen 59 TSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQK--THVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILW 136 (521)
T ss_pred ccCCCCCCCCCcceeeccCcceeEEecceeeccee--EEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEE
Confidence 344458899999999984 689999999887544 57899999999999999999887789999999999995 8999
Q ss_pred EEccccCCCCcee--eeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCcee
Q 005655 194 VFGGFYDTLREVR--YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (685)
Q Consensus 194 v~GG~~~~~~~~~--~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (685)
||||-.....+.. .+.|+|.||+.+++|+++.... .|.||+||-|+++..+|+||||+... ...-.++
T Consensus 137 ~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g---~PS~RSGHRMvawK~~lilFGGFhd~-------nr~y~Yy 206 (521)
T KOG1230|consen 137 LFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG---GPSPRSGHRMVAWKRQLILFGGFHDS-------NRDYIYY 206 (521)
T ss_pred EeccccCCcchhhhhhhhheeeeeeccchheeeccCC---CCCCCccceeEEeeeeEEEEcceecC-------CCceEEe
Confidence 9999765443333 5789999999999999999873 39999999999999999999998754 3445789
Q ss_pred eeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCC-----CcEEE
Q 005655 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-----HRWYP 345 (685)
Q Consensus 272 ~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t-----~~W~~ 345 (685)
||+|+||+.+.+|+++.+.|.-|.||+||.+++. .|.|||+||++......+...+...+|+|.+++++ ..|.+
T Consensus 207 NDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~k 286 (521)
T KOG1230|consen 207 NDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTK 286 (521)
T ss_pred eeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEee
Confidence 9999999999999999999989999999999999 99999999998766555666788899999999998 67776
Q ss_pred EEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccccc
Q 005655 346 LELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAA 425 (685)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (685)
+...+
T Consensus 287 vkp~g--------------------------------------------------------------------------- 291 (521)
T KOG1230|consen 287 VKPSG--------------------------------------------------------------------------- 291 (521)
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 65521
Q ss_pred cCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecC-EEEEEcCeeeccC-----eeeeeecccccccCCCCccEEe
Q 005655 426 KSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD-TLYVYGGMMEIND-----QEITLDDLYSLNLSKLDEWKCI 499 (685)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~-~Lyi~GG~~e~g~-----re~tl~D~y~ldL~kld~w~~~ 499 (685)
+-|.||.+.+.+|..+ .-|.|||++..-. .-..+||||.|||.. ++|...
T Consensus 292 -----------------------~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~-nrW~~~ 347 (521)
T KOG1230|consen 292 -----------------------VKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTR-NRWSEG 347 (521)
T ss_pred -----------------------CCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheeccc-chhhHh
Confidence 1599999999988775 8999999984211 113599999999988 888765
Q ss_pred c
Q 005655 500 I 500 (685)
Q Consensus 500 ~ 500 (685)
.
T Consensus 348 q 348 (521)
T KOG1230|consen 348 Q 348 (521)
T ss_pred h
Confidence 3
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=8.2e-43 Score=376.21 Aligned_cols=281 Identities=23% Similarity=0.409 Sum_probs=218.3
Q ss_pred hhceeEEEeecCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC-CCCC-ccee
Q 005655 51 EAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPP-RSAH 128 (685)
Q Consensus 51 ~~~~~~~~~~~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~~-R~~h 128 (685)
+..|..+.. ....+|.||.+|+++++ ++.||||||..... ....+++|+||+.+++|..++++. .|.+ +.+|
T Consensus 6 ~~~W~~~~~-~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 6 QGGWIKVEQ-KGGKGPGPRCSHGIAVV---GDKLYSFGGELKPN--EHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred CCeEEEecC-CCCCCCCCCCcceEEEE---CCEEEEECCccCCC--CceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 344555443 33447899999999999 89999999963221 235689999999999999887653 2332 4489
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccC---CCCCCCccceEEEECCEEEEEccccCCCC--
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK---GCPSPRSGHRMVLYKHKIIVFGGFYDTLR-- 203 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~---g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~-- 203 (685)
++++++++||||||.... ..++++++||+.+++|+.++.. +.|.+|.+|++++++++||||||+...+.
T Consensus 80 ~~~~~~~~iyv~GG~~~~------~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~ 153 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEK------REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMK 153 (341)
T ss_pred EEEEECCEEEEECCCCCC------CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccC
Confidence 999999999999997543 2468999999999999998762 12889999999999999999999864321
Q ss_pred ceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 204 EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 204 ~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
....++++++||+.+++|+.++.+ +..|.+|.+|++++++++|||+||.... ...+. .....++++++||+.+++
T Consensus 154 ~~~~~~~v~~yd~~~~~W~~l~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~--~~~gG-~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 154 TPERFRTIEAYNIADGKWVQLPDP--GENFEKRGGAGFAVVQGKIWVVYGFATS--ILPGG-KSDYESNAVQFFDPASGK 228 (341)
T ss_pred CCcccceEEEEECCCCeEeeCCCC--CCCCCCCCcceEEEECCeEEEEeccccc--cccCC-ccceecCceEEEEcCCCc
Confidence 122468999999999999999876 3346899999999999999999998642 10000 011236789999999999
Q ss_pred eEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 284 WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 284 W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
|+.+...+..|.+|.+|++++++++||||||........+...+...|+||+||+.+++|+.+..
T Consensus 229 W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 229 WTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred EEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 99998877789999999999999999999997543222121224567899999999999998764
No 4
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.7e-42 Score=386.48 Aligned_cols=259 Identities=25% Similarity=0.446 Sum_probs=214.6
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC-CCC-CcceeEEEEECCEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPP-PRSAHQAVSWKNYLY 138 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~-~R~~ha~v~~~~~iy 138 (685)
....+|.||.+|+++++ ++.||||||..... ....+++|+||+.+++|..++.+. .|. +|.+|++++++++||
T Consensus 158 ~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~~--~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lY 232 (470)
T PLN02193 158 QKGEGPGLRCSHGIAQV---GNKIYSFGGEFTPN--QPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY 232 (470)
T ss_pred cCCCCCCCccccEEEEE---CCEEEEECCcCCCC--CCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEE
Confidence 33457899999999999 89999999963222 225678999999999999876542 343 367899999999999
Q ss_pred EEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
||||.... ..++++|+||+.+++|+.+.+.+ .|.+|++|++++++++||||||+... .+++++++||+.
T Consensus 233 vfGG~~~~------~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~----~~~~~~~~yd~~ 302 (470)
T PLN02193 233 VFGGRDAS------RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT----ARLKTLDSYNIV 302 (470)
T ss_pred EECCCCCC------CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC----CCcceEEEEECC
Confidence 99997643 24799999999999999998732 28999999999999999999998643 257899999999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCc
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R 297 (685)
+++|+.++.+ +..|.+|.+|++++++++|||+||+... .++++++||+.+++|+.+..++..|.+|
T Consensus 303 t~~W~~~~~~--~~~~~~R~~~~~~~~~gkiyviGG~~g~------------~~~dv~~yD~~t~~W~~~~~~g~~P~~R 368 (470)
T PLN02193 303 DKKWFHCSTP--GDSFSIRGGAGLEVVQGKVWVVYGFNGC------------EVDDVHYYDPVQDKWTQVETFGVRPSER 368 (470)
T ss_pred CCEEEeCCCC--CCCCCCCCCcEEEEECCcEEEEECCCCC------------ccCceEEEECCCCEEEEeccCCCCCCCc
Confidence 9999998764 3457899999999999999999998543 3688999999999999999888889999
Q ss_pred ceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 298 ~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.+|++++++++||||||....+.........++|++|+||+.+++|+.+..
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 999999999999999998653322222224567899999999999998765
No 5
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=9.1e-40 Score=319.22 Aligned_cols=261 Identities=23% Similarity=0.450 Sum_probs=222.8
Q ss_pred CCCcceEEEEeccCCCEEEEEcCeecCCCce--eeeccEEEEEcCCCcEEEecCC-----------CCCCCcceeEEEEE
Q 005655 67 SPRSNCSLNINPLKETELILYGGEFYNGNKT--YVYGDLYRYDVEKQEWKVISSP-----------NSPPPRSAHQAVSW 133 (685)
Q Consensus 67 ~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~--~~~ndv~~yd~~~~~W~~l~s~-----------~~P~~R~~ha~v~~ 133 (685)
+.|.+|+++++ +.+||-|||+.. |... .--=||+++|..+-+|.++++. ..|..|++|++|.+
T Consensus 12 PrRVNHAavaV---G~riYSFGGYCs-Gedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y 87 (392)
T KOG4693|consen 12 PRRVNHAAVAV---GSRIYSFGGYCS-GEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY 87 (392)
T ss_pred cccccceeeee---cceEEecCCccc-ccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEE
Confidence 46899999999 899999999742 2211 1123799999999999998762 24677999999999
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC-CCCCccceEEEECCEEEEEccccCCCCceeeeceEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
.+++||.||.+.... ..|-++.||+.++.|.+....|. |.+|-||++|+|++.+|||||+.... ..+.++++
T Consensus 88 ~d~~yvWGGRND~eg-----aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a--~~FS~d~h 160 (392)
T KOG4693|consen 88 QDKAYVWGGRNDDEG-----ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDA--QRFSQDTH 160 (392)
T ss_pred cceEEEEcCccCccc-----ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHH--Hhhhccce
Confidence 999999999987644 47899999999999999887774 99999999999999999999997643 35789999
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~ 292 (685)
.+|+.|.+|..+... +..|.-|-.|+++++++.+|||||.... ..........+.+.+..||..|..|.+....+.
T Consensus 161 ~ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~--~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~ 236 (392)
T KOG4693|consen 161 VLDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDE--SGPFHSIHEQYCDTIMALDLATGAWTRTPENTM 236 (392)
T ss_pred eEeccceeeeehhcc--CCCchhhhhhhhhhccceEEEecccccc--CCCccchhhhhcceeEEEeccccccccCCCCCc
Confidence 999999999999887 6668889999999999999999999876 223333445567789999999999999988888
Q ss_pred CCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEec
Q 005655 293 PPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELR 349 (685)
Q Consensus 293 ~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~ 349 (685)
.|..|..|++.++++.||||||+++. -...+||||+|||.+..|..+..+
T Consensus 237 ~P~GRRSHS~fvYng~~Y~FGGYng~-------ln~HfndLy~FdP~t~~W~~I~~~ 286 (392)
T KOG4693|consen 237 KPGGRRSHSTFVYNGKMYMFGGYNGT-------LNVHFNDLYCFDPKTSMWSVISVR 286 (392)
T ss_pred CCCcccccceEEEcceEEEecccchh-------hhhhhcceeecccccchheeeecc
Confidence 99999999999999999999999763 356799999999999999999884
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=4e-38 Score=352.88 Aligned_cols=297 Identities=22% Similarity=0.383 Sum_probs=238.4
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCceeeeccE--EEEEcCC----CcEEEecCC-CCCCCcceeEEEEECCEEEEE
Q 005655 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDL--YRYDVEK----QEWKVISSP-NSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 68 ~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv--~~yd~~~----~~W~~l~s~-~~P~~R~~ha~v~~~~~iyvf 140 (685)
...+..+++. +++|+.|+|.. +. .++.+ |.+++.+ ++|..++++ ..|.||++|+++++++.||||
T Consensus 110 ~~~g~~f~~~---~~~ivgf~G~~--~~---~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~ 181 (470)
T PLN02193 110 KRPGVKFVLQ---GGKIVGFHGRS--TD---VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSF 181 (470)
T ss_pred cCCCCEEEEc---CCeEEEEeccC--CC---cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEE
Confidence 3445555544 79999999952 21 34444 4446644 899998764 358899999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCC-CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~-~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
||...... ...+++|+||+.+++|+.+++.+ .|. +|.+|++++++++||||||+... .+++++|+||+.+
T Consensus 182 GG~~~~~~----~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~----~~~ndv~~yD~~t 253 (470)
T PLN02193 182 GGEFTPNQ----PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS----RQYNGFYSFDTTT 253 (470)
T ss_pred CCcCCCCC----CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC----CCCccEEEEECCC
Confidence 99854321 13578999999999999887654 344 36799999999999999998643 3589999999999
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcc
Q 005655 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (685)
Q Consensus 219 ~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~ 298 (685)
++|+.+.++ +..|.+|++|++++++++||||||+... ..++++++||+.+++|+.+...+.+|.+|.
T Consensus 254 ~~W~~l~~~--~~~P~~R~~h~~~~~~~~iYv~GG~~~~-----------~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~ 320 (470)
T PLN02193 254 NEWKLLTPV--EEGPTPRSFHSMAADEENVYVFGGVSAT-----------ARLKTLDSYNIVDKKWFHCSTPGDSFSIRG 320 (470)
T ss_pred CEEEEcCcC--CCCCCCccceEEEEECCEEEEECCCCCC-----------CCcceEEEEECCCCEEEeCCCCCCCCCCCC
Confidence 999999876 3448899999999999999999998754 456789999999999999987666788999
Q ss_pred eeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcc
Q 005655 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPI 378 (685)
Q Consensus 299 g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (685)
+|++++++++|||+||... ..+++|++||+.+++|+.+...+
T Consensus 321 ~~~~~~~~gkiyviGG~~g----------~~~~dv~~yD~~t~~W~~~~~~g---------------------------- 362 (470)
T PLN02193 321 GAGLEVVQGKVWVVYGFNG----------CEVDDVHYYDPVQDKWTQVETFG---------------------------- 362 (470)
T ss_pred CcEEEEECCcEEEEECCCC----------CccCceEEEECCCCEEEEeccCC----------------------------
Confidence 9999999999999999743 23689999999999999876521
Q ss_pred hhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCccee
Q 005655 379 EAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSC 458 (685)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~ 458 (685)
..|.||..|+
T Consensus 363 ----------------------------------------------------------------------~~P~~R~~~~ 372 (470)
T PLN02193 363 ----------------------------------------------------------------------VRPSERSVFA 372 (470)
T ss_pred ----------------------------------------------------------------------CCCCCcceeE
Confidence 0589999999
Q ss_pred eEEecCEEEEEcCeeeccC-----eeeeeecccccccCCCCccEEeccC
Q 005655 459 MVVGKDTLYVYGGMMEIND-----QEITLDDLYSLNLSKLDEWKCIIPA 502 (685)
Q Consensus 459 ~~v~~~~Lyi~GG~~e~g~-----re~tl~D~y~ldL~kld~w~~~~~~ 502 (685)
++++++.||||||...... ....++|+|+||+.+ +.|+.+...
T Consensus 373 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t-~~W~~~~~~ 420 (470)
T PLN02193 373 SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET-LQWERLDKF 420 (470)
T ss_pred EEEECCEEEEECCccCCccccccCccceeccEEEEEcCc-CEEEEcccC
Confidence 9999999999999753110 123578999999998 889988643
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=9.9e-39 Score=362.71 Aligned_cols=284 Identities=21% Similarity=0.363 Sum_probs=247.6
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCcc
Q 005655 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144 (685)
Q Consensus 65 ~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~ 144 (685)
.+.+|..... .. .+.||++||... .....+.+.+|||.+++|..++.+ |.+|..++++++++.|||+||++
T Consensus 272 ~~~~~t~~r~-~~---~~~l~~vGG~~~---~~~~~~~ve~yd~~~~~w~~~a~m--~~~r~~~~~~~~~~~lYv~GG~~ 342 (571)
T KOG4441|consen 272 MQSPRTRPRR-SV---SGKLVAVGGYNR---QGQSLRSVECYDPKTNEWSSLAPM--PSPRCRVGVAVLNGKLYVVGGYD 342 (571)
T ss_pred ccCCCcccCc-CC---CCeEEEECCCCC---CCcccceeEEecCCcCcEeecCCC--CcccccccEEEECCEEEEEcccc
Confidence 5555554443 22 489999999633 123678999999999999999887 48899999999999999999998
Q ss_pred CCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 145 ~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
.. ...++.+|+||+.+++|+.+++ |+.+|.+|+++++++.||++||+++ ..+++++++||+.+++|+.+
T Consensus 343 ~~-----~~~l~~ve~YD~~~~~W~~~a~--M~~~R~~~~v~~l~g~iYavGG~dg----~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 343 SG-----SDRLSSVERYDPRTNQWTPVAP--MNTKRSDFGVAVLDGKLYAVGGFDG----EKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CC-----CcccceEEEecCCCCceeccCC--ccCccccceeEEECCEEEEEecccc----ccccccEEEecCCCCccccc
Confidence 51 2468999999999999999988 9999999999999999999999985 34699999999999999999
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE
Q 005655 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~ 304 (685)
.++ +.+|++|+++++++.||++||.+.. ...++.+.+|||.+++|+.+++| +.+|.++++++
T Consensus 412 a~m-----~~~r~~~gv~~~~g~iYi~GG~~~~----------~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~ 473 (571)
T KOG4441|consen 412 APM-----LTRRSGHGVAVLGGKLYIIGGGDGS----------SNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAV 473 (571)
T ss_pred CCC-----CcceeeeEEEEECCEEEEEcCcCCC----------ccccceEEEEcCCCCceeecCCc---ccccccceEEE
Confidence 998 7899999999999999999999876 23889999999999999999986 67999999999
Q ss_pred ECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhcc
Q 005655 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFD 384 (685)
Q Consensus 305 ~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (685)
++++||++||.++. .....|++||+.+++|+.+..
T Consensus 474 ~~~~iYvvGG~~~~---------~~~~~VE~ydp~~~~W~~v~~------------------------------------ 508 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGT---------SALSSVERYDPETNQWTMVAP------------------------------------ 508 (571)
T ss_pred ECCEEEEECCccCC---------CccceEEEEcCCCCceeEccc------------------------------------
Confidence 99999999999761 235669999999999999865
Q ss_pred ccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecC
Q 005655 385 ANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD 464 (685)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~ 464 (685)
|+.+|.+++++++++
T Consensus 509 -----------------------------------------------------------------m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 509 -----------------------------------------------------------------MTSPRSAVGVVVLGG 523 (571)
T ss_pred -----------------------------------------------------------------CccccccccEEEECC
Confidence 788999999999999
Q ss_pred EEEEEcCeeeccCeeeeeecccccccCCCCccEEecc
Q 005655 465 TLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIP 501 (685)
Q Consensus 465 ~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~~~ 501 (685)
.||+.||.. ..-.++.+-+||+.+ |.|+.+.+
T Consensus 524 ~ly~vGG~~----~~~~l~~ve~ydp~~-d~W~~~~~ 555 (571)
T KOG4441|consen 524 KLYAVGGFD----GNNNLNTVECYDPET-DTWTEVTE 555 (571)
T ss_pred EEEEEeccc----CccccceeEEcCCCC-CceeeCCC
Confidence 999999943 234688888899988 99999877
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=6.1e-37 Score=330.51 Aligned_cols=281 Identities=21% Similarity=0.341 Sum_probs=219.7
Q ss_pred cCCCcEEEecCCC--CCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCCC-Cccc
Q 005655 108 VEKQEWKVISSPN--SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP-RSGH 183 (685)
Q Consensus 108 ~~~~~W~~l~s~~--~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~-Rsgh 183 (685)
+...+|..+.... .|.||.+|+++++++.||||||...... ...+++|+||+.+++|+.+++.+ .|.. +.+|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNE----HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCC----ceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 3567899997643 5889999999999999999999854321 24589999999999999988743 2332 4489
Q ss_pred eEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccC
Q 005655 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263 (685)
Q Consensus 184 ~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~ 263 (685)
++++++++||||||+... ..++++++||+.+++|+.++.+.....|.+|.+|++++++++|||+||+... .
T Consensus 80 ~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~--~--- 150 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEK----REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKG--G--- 150 (341)
T ss_pred EEEEECCEEEEECCCCCC----CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCC--C---
Confidence 999999999999998643 2478999999999999999876433458899999999999999999998643 0
Q ss_pred CCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
.......++++++||+.+++|+.+..++.+|.+|.+|++++++++|||+||.......+. ......++|++||+.+++|
T Consensus 151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG-~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGG-KSDYESNAVQFFDPASGKW 229 (341)
T ss_pred ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCC-ccceecCceEEEEcCCCcE
Confidence 000112457899999999999999887777789999999999999999999753210000 0112368899999999999
Q ss_pred EEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccc
Q 005655 344 YPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVL 423 (685)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (685)
..+...+
T Consensus 230 ~~~~~~g------------------------------------------------------------------------- 236 (341)
T PLN02153 230 TEVETTG------------------------------------------------------------------------- 236 (341)
T ss_pred EeccccC-------------------------------------------------------------------------
Confidence 9876411
Q ss_pred cccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeec-----cCeeeeeecccccccCCCCccEE
Q 005655 424 AAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEI-----NDQEITLDDLYSLNLSKLDEWKC 498 (685)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~-----g~re~tl~D~y~ldL~kld~w~~ 498 (685)
.+|.+|..|+++++++.||||||.... ......++|+|+||+.+ +.|+.
T Consensus 237 -------------------------~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~-~~W~~ 290 (341)
T PLN02153 237 -------------------------AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET-LVWEK 290 (341)
T ss_pred -------------------------CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc-cEEEe
Confidence 068999999999999999999996311 01234578999999998 99998
Q ss_pred ecc
Q 005655 499 IIP 501 (685)
Q Consensus 499 ~~~ 501 (685)
+..
T Consensus 291 ~~~ 293 (341)
T PLN02153 291 LGE 293 (341)
T ss_pred ccC
Confidence 864
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=9.6e-37 Score=329.64 Aligned_cols=258 Identities=19% Similarity=0.285 Sum_probs=191.4
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEc--CCCcEEEecCCCCCCCcceeEEEEECCEEEEE
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDV--EKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~--~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvf 140 (685)
+++|.+|.+++++++ ++.|||+||.. .+++|+||+ .+++|..+++++. .+|..|+++++++.|||+
T Consensus 2 ~~lp~~~~~~~~~~~---~~~vyv~GG~~--------~~~~~~~d~~~~~~~W~~l~~~p~-~~R~~~~~~~~~~~iYv~ 69 (346)
T TIGR03547 2 PDLPVGFKNGTGAII---GDKVYVGLGSA--------GTSWYKLDLKKPSKGWQKIADFPG-GPRNQAVAAAIDGKLYVF 69 (346)
T ss_pred CCCCccccCceEEEE---CCEEEEEcccc--------CCeeEEEECCCCCCCceECCCCCC-CCcccceEEEECCEEEEE
Confidence 568899999888888 89999999951 257899996 5789999987631 479999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEE-EECCEEEEEccccCCCC----------------
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLR---------------- 203 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v-~~~~~lyv~GG~~~~~~---------------- 203 (685)
||............++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||+.....
T Consensus 70 GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 148 (346)
T TIGR03547 70 GGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEP 148 (346)
T ss_pred eCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchh
Confidence 997543211112357899999999999999974 368888999887 78999999999853100
Q ss_pred --------------ceeeeceEEEEEcCCCceEEeccCCCCCCCC-CccceeEEEeCCEEEEEecccCCCCcccCCCCCC
Q 005655 204 --------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268 (685)
Q Consensus 204 --------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~-~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (685)
...+++++++||+.+++|+.+.++ |. +|++++++.++++|||+||.... +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~-----p~~~r~~~~~~~~~~~iyv~GG~~~~----------~ 213 (346)
T TIGR03547 149 KDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN-----PFLGTAGSAIVHKGNKLLLINGEIKP----------G 213 (346)
T ss_pred hhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC-----CCCcCCCceEEEECCEEEEEeeeeCC----------C
Confidence 001248899999999999999877 64 78999999999999999998643 1
Q ss_pred ceeeeEEEE--eCCCceeEEeecCCCC----CCCcceeEEEEECCeEEEecceecccCCcc----cc--c--cccCCcEE
Q 005655 269 IIHSDLWSL--DPRTWEWSKVKKIGMP----PGPRAGFSMCVHKKRALLFGGVVDMEMKGD----VI--M--SLFLNELY 334 (685)
Q Consensus 269 ~~~~dv~~y--d~~t~~W~~~~~~g~~----P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~----~~--~--~~~~ndl~ 334 (685)
....+++.| ++.+++|+.+.++..+ +..|.+|++++++++|||+||.......+. .. . ....+.+.
T Consensus 214 ~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e 293 (346)
T TIGR03547 214 LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSE 293 (346)
T ss_pred ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEee
Confidence 223445555 4577899999876332 123457778899999999999863211000 00 0 00124689
Q ss_pred EEECCCCcEEEEEe
Q 005655 335 GFQLDNHRWYPLEL 348 (685)
Q Consensus 335 ~yd~~t~~W~~l~~ 348 (685)
+||+.+++|+.+..
T Consensus 294 ~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 294 VYALDNGKWSKVGK 307 (346)
T ss_pred EEEecCCcccccCC
Confidence 99999999987654
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.9e-36 Score=324.24 Aligned_cols=249 Identities=19% Similarity=0.295 Sum_probs=192.1
Q ss_pred CCCcceEEEEeccCCCEEEEEcCeecC------CCceeeeccEEEEE-cCC-CcEEEecCCCCCCCcceeEEEEECCEEE
Q 005655 67 SPRSNCSLNINPLKETELILYGGEFYN------GNKTYVYGDLYRYD-VEK-QEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (685)
Q Consensus 67 ~~R~~~s~~~~p~~~~~L~vfGG~~~~------g~~~~~~ndv~~yd-~~~-~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (685)
..++++.++++ ++.|||+||..+. +.....++++|+|+ +.. .+|..++++ |.+|..|+++++++.||
T Consensus 2 ~~~~g~~~~~~---~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l--p~~r~~~~~~~~~~~ly 76 (323)
T TIGR03548 2 LGVAGCYAGII---GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL--PYEAAYGASVSVENGIY 76 (323)
T ss_pred CceeeEeeeEE---CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC--CccccceEEEEECCEEE
Confidence 45678888888 8999999998654 23446789999996 332 279888765 67898888899999999
Q ss_pred EEcCccCCCCCccccccCeEEEEECCCCcE----EEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEE
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQW----EQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~t~~W----~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
|+||.... ..++++|+||+.++.| ..+++ +|.+|.+|++++++++|||+||.... ..++++++|
T Consensus 77 viGG~~~~------~~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~~~~iYv~GG~~~~----~~~~~v~~y 144 (323)
T TIGR03548 77 YIGGSNSS------ERFSSVYRITLDESKEELICETIGN--LPFTFENGSACYKDGTLYVGGGNRNG----KPSNKSYLF 144 (323)
T ss_pred EEcCCCCC------CCceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEECCEEEEEeCcCCC----ccCceEEEE
Confidence 99997543 2468999999999998 56665 89999999999999999999997532 247899999
Q ss_pred EcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC--
Q 005655 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM-- 292 (685)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~-- 292 (685)
|+.+++|+.+++++ ..+|.+|++++++++|||+||.... ...++++||+.+++|+.+..+..
T Consensus 145 d~~~~~W~~~~~~p----~~~r~~~~~~~~~~~iYv~GG~~~~------------~~~~~~~yd~~~~~W~~~~~~~~~~ 208 (323)
T TIGR03548 145 NLETQEWFELPDFP----GEPRVQPVCVKLQNELYVFGGGSNI------------AYTDGYKYSPKKNQWQKVADPTTDS 208 (323)
T ss_pred cCCCCCeeECCCCC----CCCCCcceEEEECCEEEEEcCCCCc------------cccceEEEecCCCeeEECCCCCCCC
Confidence 99999999998762 2479999999999999999998643 23578999999999999987642
Q ss_pred CCCCcceeEE-EEECCeEEEecceecccCCc----------c-------------ccccccCCcEEEEECCCCcEEEEEe
Q 005655 293 PPGPRAGFSM-CVHKKRALLFGGVVDMEMKG----------D-------------VIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 293 ~P~~R~g~s~-~~~~~~iyvfGG~~~~~~~~----------~-------------~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.|.++.++++ ++.+++||||||........ . .-...|.+.+++||+.+++|+.++.
T Consensus 209 ~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 288 (323)
T TIGR03548 209 EPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN 288 (323)
T ss_pred CceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc
Confidence 3444444444 44579999999986421000 0 0001245789999999999998764
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=9.4e-37 Score=347.63 Aligned_cols=264 Identities=13% Similarity=0.210 Sum_probs=220.1
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
..+++||+.+++|..++++ |.+|.+|+++++++.|||+||..... ..++++|+||+.++.|..+++ ||.+|
T Consensus 272 ~~v~~yd~~~~~W~~l~~m--p~~r~~~~~a~l~~~IYviGG~~~~~-----~~~~~v~~Yd~~~n~W~~~~~--m~~~R 342 (557)
T PHA02713 272 PCILVYNINTMEYSVISTI--PNHIINYASAIVDNEIIIAGGYNFNN-----PSLNKVYKINIENKIHVELPP--MIKNR 342 (557)
T ss_pred CCEEEEeCCCCeEEECCCC--CccccceEEEEECCEEEEEcCCCCCC-----CccceEEEEECCCCeEeeCCC--Ccchh
Confidence 4789999999999999875 57899999999999999999974321 246899999999999999988 89999
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCc
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~ 260 (685)
++|++++++++||++||+.+. ..++++++||+.+++|+.++++ |.+|++++++++++.||++||.......
T Consensus 343 ~~~~~~~~~g~IYviGG~~~~----~~~~sve~Ydp~~~~W~~~~~m-----p~~r~~~~~~~~~g~IYviGG~~~~~~~ 413 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQNGT----NVERTIECYTMGDDKWKMLPDM-----PIALSSYGMCVLDQYIYIIGGRTEHIDY 413 (557)
T ss_pred hceeEEEECCEEEEECCcCCC----CCCceEEEEECCCCeEEECCCC-----CcccccccEEEECCEEEEEeCCCccccc
Confidence 999999999999999998543 2478999999999999999988 8999999999999999999998643000
Q ss_pred cc-------CCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcE
Q 005655 261 DK-------NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (685)
Q Consensus 261 ~~-------~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (685)
.. ........++.+++|||.+++|+.++++ |.+|.++++++++++|||+||..+. ....+.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~--------~~~~~~v 482 (557)
T PHA02713 414 TSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDE--------KNVKTCI 482 (557)
T ss_pred ccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCC--------CccceeE
Confidence 00 0000112367899999999999999764 6789999999999999999998642 1123568
Q ss_pred EEEECCC-CcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCC
Q 005655 334 YGFQLDN-HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECV 412 (685)
Q Consensus 334 ~~yd~~t-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (685)
++|||.+ ++|+.++.
T Consensus 483 e~Ydp~~~~~W~~~~~---------------------------------------------------------------- 498 (557)
T PHA02713 483 FRYNTNTYNGWELITT---------------------------------------------------------------- 498 (557)
T ss_pred EEecCCCCCCeeEccc----------------------------------------------------------------
Confidence 9999999 89998765
Q ss_pred CcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCC
Q 005655 413 PNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (685)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~k 492 (685)
||.+|..+++++++++|||+||... ..++.+||+.+
T Consensus 499 -------------------------------------m~~~r~~~~~~~~~~~iyv~Gg~~~-------~~~~e~yd~~~ 534 (557)
T PHA02713 499 -------------------------------------TESRLSALHTILHDNTIMMLHCYES-------YMLQDTFNVYT 534 (557)
T ss_pred -------------------------------------cCcccccceeEEECCEEEEEeeecc-------eeehhhcCccc
Confidence 7999999999999999999999863 23678999988
Q ss_pred CCccEEeccC
Q 005655 493 LDEWKCIIPA 502 (685)
Q Consensus 493 ld~w~~~~~~ 502 (685)
++|+.+.+.
T Consensus 535 -~~W~~~~~~ 543 (557)
T PHA02713 535 -YEWNHICHQ 543 (557)
T ss_pred -ccccchhhh
Confidence 999998775
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.1e-35 Score=324.62 Aligned_cols=311 Identities=19% Similarity=0.278 Sum_probs=229.0
Q ss_pred eeEEEeecCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC--CCcEEEecCCCCCCCcceeEEE
Q 005655 54 KKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSPPPRSAHQAV 131 (685)
Q Consensus 54 ~~~~~~~~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~l~s~~~P~~R~~ha~v 131 (685)
...+.+...+++|.+|.+++.+++ ++.|||+||. .+ +.+++||+. +++|..+++++ ..+|++|+++
T Consensus 14 ~~~~~~~~l~~lP~~~~~~~~~~~---~~~iyv~gG~--~~------~~~~~~d~~~~~~~W~~l~~~p-~~~r~~~~~v 81 (376)
T PRK14131 14 SFAANAEQLPDLPVPFKNGTGAID---NNTVYVGLGS--AG------TSWYKLDLNAPSKGWTKIAAFP-GGPREQAVAA 81 (376)
T ss_pred hcceecccCCCCCcCccCCeEEEE---CCEEEEEeCC--CC------CeEEEEECCCCCCCeEECCcCC-CCCcccceEE
Confidence 345666688899999998888888 8999999995 11 357899986 47899988653 2489999999
Q ss_pred EECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEE-ECCEEEEEccccCCCC-------
Q 005655 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLR------- 203 (685)
Q Consensus 132 ~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~-~~~~lyv~GG~~~~~~------- 203 (685)
++++.||||||............++++|+||+.+++|+.+++ ..|.+|.+|++++ ++++||+|||......
T Consensus 82 ~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~ 160 (376)
T PRK14131 82 FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDL 160 (376)
T ss_pred EECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhh
Confidence 999999999998642111112357899999999999999985 2478888998887 8999999999753100
Q ss_pred -----------------------ceeeeceEEEEEcCCCceEEeccCCCCCCCC-CccceeEEEeCCEEEEEecccCCCC
Q 005655 204 -----------------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVS 259 (685)
Q Consensus 204 -----------------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~-~Rs~~s~~~~~~~Iyv~GG~~~~~~ 259 (685)
...++++|++||+.+++|+.+.++ |. +|.+|+++.++++|||+||....
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~-----p~~~~~~~a~v~~~~~iYv~GG~~~~-- 233 (376)
T PRK14131 161 AAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES-----PFLGTAGSAVVIKGNKLWLINGEIKP-- 233 (376)
T ss_pred hhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC-----CCCCCCcceEEEECCEEEEEeeeECC--
Confidence 001357899999999999998876 54 78899999999999999997543
Q ss_pred cccCCCCCCceeeeE--EEEeCCCceeEEeecCCCCC-----CCcceeEEEEECCeEEEecceecccCCccccccc----
Q 005655 260 TDKNQSEKGIIHSDL--WSLDPRTWEWSKVKKIGMPP-----GPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSL---- 328 (685)
Q Consensus 260 ~~~~~~~~~~~~~dv--~~yd~~t~~W~~~~~~g~~P-----~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~---- 328 (685)
+....++ +.||+.+++|..+..+..++ ..+.++.+++++++|||+||........+.....
T Consensus 234 --------~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 305 (376)
T PRK14131 234 --------GLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAH 305 (376)
T ss_pred --------CcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccc
Confidence 1222334 45678899999998753211 1123344677899999999976422100000000
Q ss_pred ----cCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhcccc
Q 005655 329 ----FLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESN 404 (685)
Q Consensus 329 ----~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (685)
....+.+||+.+++|..+..
T Consensus 306 ~~~~~~~~~e~yd~~~~~W~~~~~-------------------------------------------------------- 329 (376)
T PRK14131 306 EGLKKSWSDEIYALVNGKWQKVGE-------------------------------------------------------- 329 (376)
T ss_pred cCCcceeehheEEecCCcccccCc--------------------------------------------------------
Confidence 01347799999999986643
Q ss_pred ccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeeeeec
Q 005655 405 IDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDD 484 (685)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D 484 (685)
+|.||..++++++++.|||+||....+ ..++|
T Consensus 330 ---------------------------------------------lp~~r~~~~av~~~~~iyv~GG~~~~~---~~~~~ 361 (376)
T PRK14131 330 ---------------------------------------------LPQGLAYGVSVSWNNGVLLIGGETAGG---KAVSD 361 (376)
T ss_pred ---------------------------------------------CCCCccceEEEEeCCEEEEEcCCCCCC---cEeee
Confidence 799999999999999999999975444 45889
Q ss_pred ccccccCCCCccE
Q 005655 485 LYSLNLSKLDEWK 497 (685)
Q Consensus 485 ~y~ldL~kld~w~ 497 (685)
+|.|.+.. .++.
T Consensus 362 v~~~~~~~-~~~~ 373 (376)
T PRK14131 362 VTLLSWDG-KKLT 373 (376)
T ss_pred EEEEEEcC-CEEE
Confidence 99988765 4443
No 13
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=338.57 Aligned_cols=244 Identities=13% Similarity=0.221 Sum_probs=208.1
Q ss_pred eecCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEE
Q 005655 59 VEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (685)
Q Consensus 59 ~~~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (685)
|....++|.+|.+|++++. ++.|||+||...+ ....+.+++|||.+++|..++++ |.+|++|++++++++||
T Consensus 284 W~~l~~mp~~r~~~~~a~l---~~~IYviGG~~~~---~~~~~~v~~Yd~~~n~W~~~~~m--~~~R~~~~~~~~~g~IY 355 (557)
T PHA02713 284 YSVISTIPNHIINYASAIV---DNEIIIAGGYNFN---NPSLNKVYKINIENKIHVELPPM--IKNRCRFSLAVIDDTIY 355 (557)
T ss_pred EEECCCCCccccceEEEEE---CCEEEEEcCCCCC---CCccceEEEEECCCCeEeeCCCC--cchhhceeEEEECCEEE
Confidence 3355688999999999998 8999999995322 12468999999999999999876 58999999999999999
Q ss_pred EEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCC--------------c
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR--------------E 204 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~--------------~ 204 (685)
++||.... ..++++++||+.+++|+.+++ ||.+|++|++++++++||++||...... .
T Consensus 356 viGG~~~~------~~~~sve~Ydp~~~~W~~~~~--mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 356 AIGGQNGT------NVERTIECYTMGDDKWKMLPD--MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCcCCC------CCCceEEEEECCCCeEEECCC--CCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 99997543 246889999999999999988 9999999999999999999999864211 0
Q ss_pred eeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC-ce
Q 005655 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WE 283 (685)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~ 283 (685)
...++.+++|||.+++|+.++++ |.+|.++++++++++|||+||++.. ....+.+++|||.+ ++
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m-----~~~r~~~~~~~~~~~IYv~GG~~~~----------~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNF-----WTGTIRPGVVSHKDDIYVVCDIKDE----------KNVKTCIFRYNTNTYNG 492 (557)
T ss_pred ccccceEEEECCCCCeEeecCCC-----CcccccCcEEEECCEEEEEeCCCCC----------CccceeEEEecCCCCCC
Confidence 11368899999999999999988 8899999999999999999998643 12345689999999 89
Q ss_pred eEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 284 WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 284 W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
|+.+.++ |.+|.++++++++++||++||..+ ...+.+||+.+++|+.+..
T Consensus 493 W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~------------~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 493 WELITTT---ESRLSALHTILHDNTIMMLHCYES------------YMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred eeEcccc---CcccccceeEEECCEEEEEeeecc------------eeehhhcCcccccccchhh
Confidence 9999764 789999999999999999999865 2468999999999998886
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=336.43 Aligned_cols=241 Identities=23% Similarity=0.401 Sum_probs=217.3
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvf 140 (685)
...++|.+|..++++++ ++.||++||... ....++.+++|||.+++|..+++|+ .+|++|++++++|.||++
T Consensus 315 ~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~~a~M~--~~R~~~~v~~l~g~iYav 386 (571)
T KOG4441|consen 315 SLAPMPSPRCRVGVAVL---NGKLYVVGGYDS---GSDRLSSVERYDPRTNQWTPVAPMN--TKRSDFGVAVLDGKLYAV 386 (571)
T ss_pred ecCCCCcccccccEEEE---CCEEEEEccccC---CCcccceEEEecCCCCceeccCCcc--CccccceeEEECCEEEEE
Confidence 56789999999999999 899999999632 2346799999999999999998876 899999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||.++. ..++++.+||+.++.|+.+++ |+.+|++|++++++++||++||+.+..+ +++++++|||.+++
T Consensus 387 GG~dg~------~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~---~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 387 GGFDGE------KSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSN---CLNSVECYDPETNT 455 (571)
T ss_pred eccccc------cccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcCCCcc---ccceEEEEcCCCCc
Confidence 999854 367899999999999999998 8889999999999999999999877542 79999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCccee
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~ 300 (685)
|+.+++| +.+|.+++++++++.||++||+++. ..+..+.+|||.+++|+.+.++ +.+|+++
T Consensus 456 W~~~~~M-----~~~R~~~g~a~~~~~iYvvGG~~~~-----------~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~ 516 (571)
T KOG4441|consen 456 WTLIAPM-----NTRRSGFGVAVLNGKIYVVGGFDGT-----------SALSSVERYDPETNQWTMVAPM---TSPRSAV 516 (571)
T ss_pred eeecCCc-----ccccccceEEEECCEEEEECCccCC-----------CccceEEEEcCCCCceeEcccC---ccccccc
Confidence 9999999 8999999999999999999999874 3455699999999999999764 6799999
Q ss_pred EEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+++++++++|++||..+ ..+++.|.+||+.+++|+.+..
T Consensus 517 g~~~~~~~ly~vGG~~~---------~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDG---------NNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cEEEECCEEEEEecccC---------ccccceeEEcCCCCCceeeCCC
Confidence 99999999999999765 4578999999999999999887
No 15
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=5.6e-34 Score=318.96 Aligned_cols=256 Identities=33% Similarity=0.586 Sum_probs=223.2
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEec-CCCCCCCcceeEEEEECCEEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAVSWKNYLYI 139 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s~~~P~~R~~ha~v~~~~~iyv 139 (685)
.....|.+|.+|+++.+ ++.+|||||......... .+||+||..+..|.... ....|.+|.+|++++++++|||
T Consensus 53 ~~~~~p~~R~~hs~~~~---~~~~~vfGG~~~~~~~~~--~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~l 127 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLI---GNKLYVFGGYGSGDRLTD--LDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYL 127 (482)
T ss_pred cCCCCcchhhccceeEE---CCEEEEECCCCCCCcccc--ceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEE
Confidence 34568999999999999 899999999743322211 17999999999999554 4556889999999999999999
Q ss_pred EcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC-CCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 140 fGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
|||.... ..++++++.||+.|++|..+.+.+. |.+|.+|++++++++||||||...... ++|++|+||+.+
T Consensus 128 fGG~~~~-----~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~---~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 128 FGGTDKK-----YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD---SLNDLHIYDLET 199 (482)
T ss_pred EccccCC-----CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc---ceeeeeeecccc
Confidence 9998762 2358999999999999999998776 999999999999999999999876542 799999999999
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcc
Q 005655 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (685)
Q Consensus 219 ~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~ 298 (685)
.+|.++... +..|.||.+|+++++++++|||||.+.. ..+++|+|+||+.+..|..+...+..|.+|+
T Consensus 200 ~~W~~~~~~--g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~ 267 (482)
T KOG0379|consen 200 STWSELDTQ--GEAPSPRYGHAMVVVGNKLLVFGGGDDG----------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRS 267 (482)
T ss_pred ccceecccC--CCCCCCCCCceEEEECCeEEEEeccccC----------CceecceEeeecccceeeeccccCCCCCCcc
Confidence 999999987 6679999999999999999999999833 4899999999999999999999999999999
Q ss_pred eeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 299 g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+|++++.+..++||||..... ...+.++|.|++.+..|..+..
T Consensus 268 ~h~~~~~~~~~~l~gG~~~~~-------~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 268 GHSLTVSGDHLLLFGGGTDPK-------QEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred eeeeEEECCEEEEEcCCcccc-------cccccccccccccccceeeeec
Confidence 999999999999999986530 1258899999999999999886
No 16
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=7.2e-35 Score=284.95 Aligned_cols=273 Identities=25% Similarity=0.453 Sum_probs=230.0
Q ss_pred cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-----------CCCCC
Q 005655 112 EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-----------CPSPR 180 (685)
Q Consensus 112 ~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-----------~P~~R 180 (685)
.|..--... +.|.+|++++++..||-|||+.+...-. ...--||.+||..+-.|+++++.- .|..|
T Consensus 3 ~WTVHLeGG--PrRVNHAavaVG~riYSFGGYCsGedy~-~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHLEGG--PRRVNHAAVAVGSRIYSFGGYCSGEDYD-AKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEecCC--cccccceeeeecceEEecCCcccccccc-cCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 466433332 5799999999999999999987654321 111247999999999999998711 27789
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCc
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~ 260 (685)
+||+.|.+++++||.||.++.. ...|.+++||+.+++|.+.... +.+|.+|-||++|++++.+||||||...
T Consensus 80 YGHtvV~y~d~~yvWGGRND~e---gaCN~Ly~fDp~t~~W~~p~v~--G~vPgaRDGHsAcV~gn~MyiFGGye~~--- 151 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDE---GACNLLYEFDPETNVWKKPEVE--GFVPGARDGHSACVWGNQMYIFGGYEED--- 151 (392)
T ss_pred cCceEEEEcceEEEEcCccCcc---cccceeeeecccccccccccee--eecCCccCCceeeEECcEEEEecChHHH---
Confidence 9999999999999999998742 3689999999999999998877 7789999999999999999999999876
Q ss_pred ccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
...+.+|++.||..|.+|+.+...|.||.-|-.|+++++++++|||||..+....-+++...+.+.+..+|+.|
T Consensus 152 ------a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T 225 (392)
T KOG4693|consen 152 ------AQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLAT 225 (392)
T ss_pred ------HHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccc
Confidence 34788999999999999999999999999999999999999999999998765555566677889999999999
Q ss_pred CcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeecc
Q 005655 341 HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDD 420 (685)
Q Consensus 341 ~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (685)
..|...+..
T Consensus 226 ~aW~r~p~~----------------------------------------------------------------------- 234 (392)
T KOG4693|consen 226 GAWTRTPEN----------------------------------------------------------------------- 234 (392)
T ss_pred cccccCCCC-----------------------------------------------------------------------
Confidence 999875431
Q ss_pred ccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCCCCccEEec
Q 005655 421 GVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCII 500 (685)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~~ 500 (685)
.++|..|.+|++.|.++.||||||++..= ..-++|||+||..+ --|++|-
T Consensus 235 ---------------------------~~~P~GRRSHS~fvYng~~Y~FGGYng~l--n~HfndLy~FdP~t-~~W~~I~ 284 (392)
T KOG4693|consen 235 ---------------------------TMKPGGRRSHSTFVYNGKMYMFGGYNGTL--NVHFNDLYCFDPKT-SMWSVIS 284 (392)
T ss_pred ---------------------------CcCCCcccccceEEEcceEEEecccchhh--hhhhcceeeccccc-chheeee
Confidence 12699999999999999999999998433 35689999999988 7899987
Q ss_pred cC
Q 005655 501 PA 502 (685)
Q Consensus 501 ~~ 502 (685)
..
T Consensus 285 ~~ 286 (392)
T KOG4693|consen 285 VR 286 (392)
T ss_pred cc
Confidence 54
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=5e-34 Score=326.00 Aligned_cols=271 Identities=18% Similarity=0.257 Sum_probs=222.7
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWML 161 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~y 161 (685)
..+++.||.. . .+..+.+|++..++|..++.. | .+..|+++++++.|||+||..... ...+++|+|
T Consensus 251 ~~~~~~~g~~---~---~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~y 316 (534)
T PHA03098 251 SIIYIHITMS---I---FTYNYITNYSPLSEINTIIDI--H-YVYCFGSVVLNNVIYFIGGMNKNN-----LSVNSVVSY 316 (534)
T ss_pred cceEeecccc---h---hhceeeecchhhhhcccccCc--c-ccccceEEEECCEEEEECCCcCCC-----CeeccEEEE
Confidence 4455556631 1 234566889889999987543 2 345578999999999999986432 246799999
Q ss_pred ECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeE
Q 005655 162 DLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQF 241 (685)
Q Consensus 162 D~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~ 241 (685)
|+.+++|..+++ +|.+|.+|++++++++||++||... ...++++++||+.+++|+.++++ |.||++|++
T Consensus 317 d~~~~~W~~~~~--~~~~R~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~l-----p~~r~~~~~ 385 (534)
T PHA03098 317 DTKTKSWNKVPE--LIYPRKNPGVTVFNNRIYVIGGIYN----SISLNTVESWKPGESKWREEPPL-----IFPRYNPCV 385 (534)
T ss_pred eCCCCeeeECCC--CCcccccceEEEECCEEEEEeCCCC----CEecceEEEEcCCCCceeeCCCc-----CcCCccceE
Confidence 999999999987 8899999999999999999999863 23578999999999999998887 889999999
Q ss_pred EEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCC
Q 005655 242 FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK 321 (685)
Q Consensus 242 ~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~ 321 (685)
+.+++.|||+||.... +..++++++||+.+++|+.+.+ .|.+|.+|++++++++|||+||......
T Consensus 386 ~~~~~~iYv~GG~~~~----------~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~- 451 (534)
T PHA03098 386 VNVNNLIYVIGGISKN----------DELLKTVECFSLNTNKWSKGSP---LPISHYGGCAIYHDGKIYVIGGISYIDN- 451 (534)
T ss_pred EEECCEEEEECCcCCC----------CcccceEEEEeCCCCeeeecCC---CCccccCceEEEECCEEEEECCccCCCC-
Confidence 9999999999997643 2346889999999999999875 4789999999999999999999864221
Q ss_pred ccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhc
Q 005655 322 GDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEM 401 (685)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (685)
...++.+++||+.+++|..++.
T Consensus 452 -----~~~~~~v~~yd~~~~~W~~~~~----------------------------------------------------- 473 (534)
T PHA03098 452 -----IKVYNIVESYNPVTNKWTELSS----------------------------------------------------- 473 (534)
T ss_pred -----CcccceEEEecCCCCceeeCCC-----------------------------------------------------
Confidence 1235679999999999997653
Q ss_pred cccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeee
Q 005655 402 ESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEIT 481 (685)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~t 481 (685)
+|.||+++++++.++.|||+||.... ..
T Consensus 474 ------------------------------------------------~~~~r~~~~~~~~~~~iyv~GG~~~~----~~ 501 (534)
T PHA03098 474 ------------------------------------------------LNFPRINASLCIFNNKIYVVGGDKYE----YY 501 (534)
T ss_pred ------------------------------------------------CCcccccceEEEECCEEEEEcCCcCC----cc
Confidence 68889999999999999999998632 24
Q ss_pred eecccccccCCCCccEEeccC
Q 005655 482 LDDLYSLNLSKLDEWKCIIPA 502 (685)
Q Consensus 482 l~D~y~ldL~kld~w~~~~~~ 502 (685)
++++|.||+.+ +.|+.+...
T Consensus 502 ~~~v~~yd~~~-~~W~~~~~~ 521 (534)
T PHA03098 502 INEIEVYDDKT-NTWTLFCKF 521 (534)
T ss_pred cceeEEEeCCC-CEEEecCCC
Confidence 78999999998 999988754
No 18
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.2e-34 Score=300.47 Aligned_cols=322 Identities=25% Similarity=0.457 Sum_probs=256.4
Q ss_pred hhceeEEEeecCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEe-cCCCCCCCcceeE
Q 005655 51 EAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPPRSAHQ 129 (685)
Q Consensus 51 ~~~~~~~~~~~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l-~s~~~P~~R~~ha 129 (685)
.-+|..+. ....|-|.||.||-++++ ..-|+||||- +. -..+.+++||..+++|..- .....|++-..|.
T Consensus 16 ~~rWrrV~-~~tGPvPrpRHGHRAVai---kELiviFGGG--NE---GiiDELHvYNTatnqWf~PavrGDiPpgcAA~G 86 (830)
T KOG4152|consen 16 VVRWRRVQ-QSTGPVPRPRHGHRAVAI---KELIVIFGGG--NE---GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFG 86 (830)
T ss_pred ccceEEEe-cccCCCCCccccchheee---eeeEEEecCC--cc---cchhhhhhhccccceeecchhcCCCCCchhhcc
Confidence 34555554 366788999999999999 6889999993 22 2678999999999999832 2455678888899
Q ss_pred EEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-----CCCCCccceEEEECCEEEEEccccCCCCc
Q 005655 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-----CPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204 (685)
Q Consensus 130 ~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-----~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~ 204 (685)
++..+.+||+|||+.... .+.|++|.+-...=.|.++.+.. .|.||.||+..+++++.|+|||......+
T Consensus 87 fvcdGtrilvFGGMvEYG-----kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseD 161 (830)
T KOG4152|consen 87 FVCDGTRILVFGGMVEYG-----KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED 161 (830)
T ss_pred eEecCceEEEEccEeeec-----cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccC
Confidence 998999999999986543 25688877766656777776532 38999999999999999999998654332
Q ss_pred -----eeeeceEEEEEcCCC----ceEEeccCCCCCCCCCccceeEEEe------CCEEEEEecccCCCCcccCCCCCCc
Q 005655 205 -----VRYYNDLYVFDLDQF----KWQEIKPRFGSMWPSPRSGFQFFVY------QDEVFLYGGYSKEVSTDKNQSEKGI 269 (685)
Q Consensus 205 -----~~~~~dv~~yD~~t~----~W~~v~~~~~~~~P~~Rs~~s~~~~------~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (685)
.+|+||+|++++.-. -|...-.. +.+|.||-.|+++++ ..++|||||.++ .
T Consensus 162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~--Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G------------~ 227 (830)
T KOG4152|consen 162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITY--GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG------------C 227 (830)
T ss_pred cccccchhhcceEEEEeccCCceEEEeccccc--CCCCCCcccceeEEEEeccCCcceEEEEccccc------------c
Confidence 359999999998843 48765544 778999999999998 457999999985 5
Q ss_pred eeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecc-----cCCccccccccCCcEEEEECCCCcEE
Q 005655 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDM-----EMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 270 ~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~-----~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
.+.|+|.+|+.+.+|.+....|.+|.||+-|+++++++++|||||.... ....+..+-.+.+.+-++|+++..|.
T Consensus 228 RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~ 307 (830)
T KOG4152|consen 228 RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWE 307 (830)
T ss_pred cccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchhee
Confidence 7999999999999999999999999999999999999999999997532 12222233456788999999999999
Q ss_pred EEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeecccccc
Q 005655 345 PLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLA 424 (685)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (685)
.|-..... |
T Consensus 308 tl~~d~~e-----------------------------------d------------------------------------ 316 (830)
T KOG4152|consen 308 TLLMDTLE-----------------------------------D------------------------------------ 316 (830)
T ss_pred eeeecccc-----------------------------------c------------------------------------
Confidence 98872100 0
Q ss_pred ccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCee---eccCeeeeeecccccccCCCC
Q 005655 425 AKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMM---EINDQEITLDDLYSLNLSKLD 494 (685)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~---e~g~re~tl~D~y~ldL~kld 494 (685)
...|.+|.+||++.++..|||+-|.- ..-+.++.+-|||-||..+..
T Consensus 317 -----------------------~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp 366 (830)
T KOG4152|consen 317 -----------------------NTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPP 366 (830)
T ss_pred -----------------------cccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCC
Confidence 00699999999999999999999864 335678999999999988754
No 19
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=313.03 Aligned_cols=258 Identities=31% Similarity=0.534 Sum_probs=223.9
Q ss_pred CCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC-CCCCccceEEEECCEEEEEc
Q 005655 118 SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFG 196 (685)
Q Consensus 118 s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rsgh~~v~~~~~lyv~G 196 (685)
....|.+|.+|+++.+++.+|||||........ .+ ++|+||..+..|......+. |.+|++|++++++++||+||
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~---~~-dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLT---DL-DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccc---cc-eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 345689999999999999999999987764431 11 69999999999999888775 89999999999999999999
Q ss_pred cccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEE
Q 005655 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 197 G~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
|.... ..++++|+.||+.|.+|..+.+. +..|.+|.+|++++++++||||||.... +..++++|+
T Consensus 130 G~~~~---~~~~~~l~~~d~~t~~W~~l~~~--~~~P~~r~~Hs~~~~g~~l~vfGG~~~~----------~~~~ndl~i 194 (482)
T KOG0379|consen 130 GTDKK---YRNLNELHSLDLSTRTWSLLSPT--GDPPPPRAGHSATVVGTKLVVFGGIGGT----------GDSLNDLHI 194 (482)
T ss_pred cccCC---CCChhheEeccCCCCcEEEecCc--CCCCCCcccceEEEECCEEEEECCccCc----------ccceeeeee
Confidence 98752 33589999999999999999887 4579999999999999999999999876 238999999
Q ss_pred EeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhh
Q 005655 277 LDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKD 356 (685)
Q Consensus 277 yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~ 356 (685)
||+.+.+|.++...|..|.||.+|+|+++++++|||||.+.. ..+++|+|+||+.+..|..+...+
T Consensus 195 ~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~--------~~~l~D~~~ldl~~~~W~~~~~~g------ 260 (482)
T KOG0379|consen 195 YDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDG--------DVYLNDVHILDLSTWEWKLLPTGG------ 260 (482)
T ss_pred eccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccC--------CceecceEeeecccceeeeccccC------
Confidence 999999999999999999999999999999999999998721 467999999999999999555411
Q ss_pred hhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcc
Q 005655 357 KLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKK 436 (685)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (685)
T Consensus 261 -------------------------------------------------------------------------------- 260 (482)
T KOG0379|consen 261 -------------------------------------------------------------------------------- 260 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCCCCccEEeccCC
Q 005655 437 KSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPAS 503 (685)
Q Consensus 437 ~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~~~~~ 503 (685)
-+|.||+.|++++.++++||+||.-.. ....+.|+|.|++.. ..|..+....
T Consensus 261 ------------~~p~~R~~h~~~~~~~~~~l~gG~~~~--~~~~l~~~~~l~~~~-~~w~~~~~~~ 312 (482)
T KOG0379|consen 261 ------------DLPSPRSGHSLTVSGDHLLLFGGGTDP--KQEPLGDLYGLDLET-LVWSKVESVG 312 (482)
T ss_pred ------------CCCCCcceeeeEEECCEEEEEcCCccc--ccccccccccccccc-cceeeeeccc
Confidence 069999999999999999999997643 112699999999996 8899998775
No 20
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=8.5e-33 Score=315.86 Aligned_cols=238 Identities=18% Similarity=0.309 Sum_probs=200.4
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCC
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN 148 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~ 148 (685)
+..|+++++ ++.|||+||.... ....+++++||+.+++|..++++ |.+|.+|+++++++.|||+||....
T Consensus 285 ~~~~~~~~~---~~~lyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~~--~~~R~~~~~~~~~~~lyv~GG~~~~-- 354 (534)
T PHA03098 285 VYCFGSVVL---NNVIYFIGGMNKN---NLSVNSVVSYDTKTKSWNKVPEL--IYPRKNPGVTVFNNRIYVIGGIYNS-- 354 (534)
T ss_pred cccceEEEE---CCEEEEECCCcCC---CCeeccEEEEeCCCCeeeECCCC--CcccccceEEEECCEEEEEeCCCCC--
Confidence 445677777 8999999996322 23567999999999999988765 5789999999999999999998632
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
..++++++||+.+++|+.+++ +|.+|++|++++++++|||+||..... ..++++++||+.+++|+.+.++
T Consensus 355 ----~~~~~v~~yd~~~~~W~~~~~--lp~~r~~~~~~~~~~~iYv~GG~~~~~---~~~~~v~~yd~~t~~W~~~~~~- 424 (534)
T PHA03098 355 ----ISLNTVESWKPGESKWREEPP--LIFPRYNPCVVNVNNLIYVIGGISKND---ELLKTVECFSLNTNKWSKGSPL- 424 (534)
T ss_pred ----EecceEEEEcCCCCceeeCCC--cCcCCccceEEEECCEEEEECCcCCCC---cccceEEEEeCCCCeeeecCCC-
Confidence 246899999999999999987 899999999999999999999975432 2478999999999999999877
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCe
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKR 308 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~ 308 (685)
|.+|++|+++++++.|||+||.... . ....++.+++||+.+++|+.+..+ |.+|.++++++++++
T Consensus 425 ----p~~r~~~~~~~~~~~iyv~GG~~~~--~------~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~ 489 (534)
T PHA03098 425 ----PISHYGGCAIYHDGKIYVIGGISYI--D------NIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCIFNNK 489 (534)
T ss_pred ----CccccCceEEEECCEEEEECCccCC--C------CCcccceEEEecCCCCceeeCCCC---CcccccceEEEECCE
Confidence 8899999999999999999998643 0 012356699999999999998753 678999999999999
Q ss_pred EEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecC
Q 005655 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (685)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (685)
||||||.... .+.+++++||+.+++|..+...+
T Consensus 490 iyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 490 IYVVGGDKYE---------YYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred EEEEcCCcCC---------cccceeEEEeCCCCEEEecCCCc
Confidence 9999998642 24688999999999999887644
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=6.8e-31 Score=281.35 Aligned_cols=235 Identities=19% Similarity=0.291 Sum_probs=182.2
Q ss_pred eecCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcE----EEecCCCCCCCcceeEEEEEC
Q 005655 59 VEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSWK 134 (685)
Q Consensus 59 ~~~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W----~~l~s~~~P~~R~~ha~v~~~ 134 (685)
|....++|.+|.+++++++ ++.|||+||.. +. ..++++++||+.+++| ..+++ .|.+|.+|++++++
T Consensus 53 W~~~~~lp~~r~~~~~~~~---~~~lyviGG~~--~~--~~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~~ 123 (323)
T TIGR03548 53 WVKDGQLPYEAAYGASVSV---ENGIYYIGGSN--SS--ERFSSVYRITLDESKEELICETIGN--LPFTFENGSACYKD 123 (323)
T ss_pred EEEcccCCccccceEEEEE---CCEEEEEcCCC--CC--CCceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEEC
Confidence 4455778999998888888 79999999963 22 2468999999999998 45544 47889999999999
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCC-CCCccceEEEECCEEEEEccccCCCCceeeeceEEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P-~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
++|||+||.... ..++++|+||+.+++|+.+++ +| .+|.+|++++++++||||||+... ...++++
T Consensus 124 ~~iYv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~p~~~r~~~~~~~~~~~iYv~GG~~~~-----~~~~~~~ 190 (323)
T TIGR03548 124 GTLYVGGGNRNG------KPSNKSYLFNLETQEWFELPD--FPGEPRVQPVCVKLQNELYVFGGGSNI-----AYTDGYK 190 (323)
T ss_pred CEEEEEeCcCCC------ccCceEEEEcCCCCCeeECCC--CCCCCCCcceEEEECCEEEEEcCCCCc-----cccceEE
Confidence 999999997432 136899999999999999987 65 479999999999999999998532 2467899
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEE-eCCEEEEEecccCCCCcc---------------------cCCCCCCcee
Q 005655 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFV-YQDEVFLYGGYSKEVSTD---------------------KNQSEKGIIH 271 (685)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~-~~~~Iyv~GG~~~~~~~~---------------------~~~~~~~~~~ 271 (685)
||+.+++|+.+++++....|.++.+++.++ .++.|||+||++...... ........+.
T Consensus 191 yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (323)
T TIGR03548 191 YSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWN 270 (323)
T ss_pred EecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcC
Confidence 999999999998874333455555555544 479999999987430000 0000111234
Q ss_pred eeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceec
Q 005655 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (685)
Q Consensus 272 ~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~ 317 (685)
+++++||+.+++|+.+..+ +..+|+++++++++++||||||...
T Consensus 271 ~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 271 RKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred ceEEEEECCCCeeeEcccc--cccccCchheEEECCEEEEEecccc
Confidence 7799999999999999753 2358999999999999999999754
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=99.98 E-value=8.8e-31 Score=294.39 Aligned_cols=208 Identities=17% Similarity=0.232 Sum_probs=181.4
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
++.||++||.. + ....+.+++|||.+++|..++++ |.+|..|+++++++.||++||... .+.+++
T Consensus 271 ~~~lyviGG~~--~--~~~~~~v~~Ydp~~~~W~~~~~m--~~~r~~~~~v~~~~~iYviGG~~~---------~~sve~ 335 (480)
T PHA02790 271 GEVVYLIGGWM--N--NEIHNNAIAVNYISNNWIPIPPM--NSPRLYASGVPANNKLYVVGGLPN---------PTSVER 335 (480)
T ss_pred CCEEEEEcCCC--C--CCcCCeEEEEECCCCEEEECCCC--CchhhcceEEEECCEEEEECCcCC---------CCceEE
Confidence 79999999952 2 12567899999999999999886 578999999999999999999642 256899
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s 240 (685)
||+.+++|..+++ ||.+|.+|++++++++||++||.... .+.+++|||.+++|+.++++ |.||.+|+
T Consensus 336 ydp~~n~W~~~~~--l~~~r~~~~~~~~~g~IYviGG~~~~------~~~ve~ydp~~~~W~~~~~m-----~~~r~~~~ 402 (480)
T PHA02790 336 WFHGDAAWVNMPS--LLKPRCNPAVASINNVIYVIGGHSET------DTTTEYLLPNHDQWQFGPST-----YYPHYKSC 402 (480)
T ss_pred EECCCCeEEECCC--CCCCCcccEEEEECCEEEEecCcCCC------CccEEEEeCCCCEEEeCCCC-----CCccccce
Confidence 9999999999988 89999999999999999999997532 36799999999999999888 89999999
Q ss_pred EEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccC
Q 005655 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (685)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (685)
++++++.|||+||. +.+|||.+++|+.++++ |.+|.++++++++++|||+||...
T Consensus 403 ~~~~~~~IYv~GG~-------------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~--- 457 (480)
T PHA02790 403 ALVFGRRLFLVGRN-------------------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYR--- 457 (480)
T ss_pred EEEECCEEEEECCc-------------------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCC---
Confidence 99999999999984 45799999999999764 779999999999999999999853
Q ss_pred CccccccccCCcEEEEECCCCcEEEEE
Q 005655 321 KGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
....+.+++||+.+++|+...
T Consensus 458 ------~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 458 ------GSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ------CcccceEEEEECCCCeEEecC
Confidence 123578999999999998754
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=6.9e-30 Score=276.18 Aligned_cols=258 Identities=20% Similarity=0.259 Sum_probs=186.9
Q ss_pred cCCCCC-CCCcceEEEEeccCCCEEEEEcCeecCC--CceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEE-EECCE
Q 005655 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV-SWKNY 136 (685)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~p~~~~~L~vfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v-~~~~~ 136 (685)
..+++| .+|.+|+++++ ++.|||+||..... .....++++++|||.+++|+.++. ..|.+|.+|+++ +++++
T Consensus 45 ~l~~~p~~~R~~~~~~~~---~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~ 120 (346)
T TIGR03547 45 KIADFPGGPRNQAVAAAI---DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQ 120 (346)
T ss_pred ECCCCCCCCcccceEEEE---CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCE
Confidence 456677 58999999999 89999999963222 112357899999999999999974 347788888877 68999
Q ss_pred EEEEcCccCCCCC----------------------------ccccccCeEEEEECCCCcEEEcccCCCCC-CCccceEEE
Q 005655 137 LYIFGGEFTSPNQ----------------------------ERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVL 187 (685)
Q Consensus 137 iyvfGG~~~s~~~----------------------------~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rsgh~~v~ 187 (685)
|||+||....... .....++++++||+.+++|+.+++ +|. +|.+|++++
T Consensus 121 IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~--~p~~~r~~~~~~~ 198 (346)
T TIGR03547 121 AYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE--NPFLGTAGSAIVH 198 (346)
T ss_pred EEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc--CCCCcCCCceEEE
Confidence 9999997532000 000124789999999999999987 775 789999999
Q ss_pred ECCEEEEEccccCCCCceeeeceEEEEE--cCCCceEEeccCCCCC--CCCCccceeEEEeCCEEEEEecccCCCCcc--
Q 005655 188 YKHKIIVFGGFYDTLREVRYYNDLYVFD--LDQFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVSTD-- 261 (685)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD--~~t~~W~~v~~~~~~~--~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~-- 261 (685)
++++||||||..... .....++.|+ +.+++|+.+++++... .+..|.+|++++++++|||+||+.......
T Consensus 199 ~~~~iyv~GG~~~~~---~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~ 275 (346)
T TIGR03547 199 KGNKLLLINGEIKPG---LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENY 275 (346)
T ss_pred ECCEEEEEeeeeCCC---ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhh
Confidence 999999999985432 1234566665 5678999999883211 122345677888899999999986320000
Q ss_pred -cCC---CCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEE
Q 005655 262 -KNQ---SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (685)
Q Consensus 262 -~~~---~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (685)
... ......+..+.+||+.+++|+.+.++ |.+|.++++++++++||||||.... ...+++|+.|-
T Consensus 276 ~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~~~~ 344 (346)
T TIGR03547 276 KNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENSG--------GKAVTDVYLLS 344 (346)
T ss_pred hcCCccccCCCCceeEeeEEEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCCC--------CCEeeeEEEEE
Confidence 000 00001234688999999999999764 7789999988999999999998642 34578888775
Q ss_pred C
Q 005655 338 L 338 (685)
Q Consensus 338 ~ 338 (685)
+
T Consensus 345 ~ 345 (346)
T TIGR03547 345 W 345 (346)
T ss_pred e
Confidence 3
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=5.2e-30 Score=288.15 Aligned_cols=211 Identities=17% Similarity=0.242 Sum_probs=182.9
Q ss_pred EEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeec
Q 005655 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYN 209 (685)
Q Consensus 130 ~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~ 209 (685)
++.+++.||++||.... ...+.+|+||+.+++|..+++ ||.+|..|++++++++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~------~~~~~v~~Ydp~~~~W~~~~~--m~~~r~~~~~v~~~~~iYviGG~~~-------~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN------EIHNNAIAVNYISNNWIPIPP--MNSPRLYASGVPANNKLYVVGGLPN-------PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCC------CcCCeEEEEECCCCEEEECCC--CCchhhcceEEEECCEEEEECCcCC-------CC
Confidence 34579999999997532 246889999999999999998 8999999999999999999999743 25
Q ss_pred eEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
++++||+.+++|..++++ |.+|.+|++++++++||++||.... .+.+.+|||.+++|+.+++
T Consensus 332 sve~ydp~~n~W~~~~~l-----~~~r~~~~~~~~~g~IYviGG~~~~-------------~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSL-----LKPRCNPAVASINNVIYVIGGHSET-------------DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ceEEEECCCCeEEECCCC-----CCCCcccEEEEECCEEEEecCcCCC-------------CccEEEEeCCCCEEEeCCC
Confidence 789999999999999888 8999999999999999999997532 2458899999999999876
Q ss_pred CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCch
Q 005655 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (685)
Q Consensus 290 ~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (685)
+ |.+|.++++++++++|||+||. +.+||+.+++|+.++.
T Consensus 394 m---~~~r~~~~~~~~~~~IYv~GG~-----------------~e~ydp~~~~W~~~~~--------------------- 432 (480)
T PHA02790 394 T---YYPHYKSCALVFGRRLFLVGRN-----------------AEFYCESSNTWTLIDD--------------------- 432 (480)
T ss_pred C---CCccccceEEEECCEEEEECCc-----------------eEEecCCCCcEeEcCC---------------------
Confidence 4 7799999999999999999984 5689999999997764
Q ss_pred hhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCC
Q 005655 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (685)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (685)
T Consensus 433 -------------------------------------------------------------------------------- 432 (480)
T PHA02790 433 -------------------------------------------------------------------------------- 432 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCCCCccEEe
Q 005655 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (685)
Q Consensus 450 ~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~ 499 (685)
+|.||.+++++|+++.|||+||... . ..++.+.+||+.+ |.|+..
T Consensus 433 m~~~r~~~~~~v~~~~IYviGG~~~--~--~~~~~ve~Yd~~~-~~W~~~ 477 (480)
T PHA02790 433 PIYPRDNPELIIVDNKLLLIGGFYR--G--SYIDTIEVYNNRT-YSWNIW 477 (480)
T ss_pred CCCCccccEEEEECCEEEEECCcCC--C--cccceEEEEECCC-CeEEec
Confidence 7899999999999999999999752 1 2368899999998 999754
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=1.5e-29 Score=276.30 Aligned_cols=257 Identities=21% Similarity=0.283 Sum_probs=188.8
Q ss_pred CCCCC-CCCcceEEEEeccCCCEEEEEcCeecCC--CceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEE-ECCEE
Q 005655 62 NVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNYL 137 (685)
Q Consensus 62 ~~~~P-~~R~~~s~~~~p~~~~~L~vfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~-~~~~i 137 (685)
..++| .+|.+|+++++ ++.||||||..... .....++++|+||+.+++|+.++++ .|.+|.+|++++ ++++|
T Consensus 67 l~~~p~~~r~~~~~v~~---~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~I 142 (376)
T PRK14131 67 IAAFPGGPREQAVAAFI---DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGKA 142 (376)
T ss_pred CCcCCCCCcccceEEEE---CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCEE
Confidence 34555 58999999998 89999999963211 1124678999999999999999753 477788888887 79999
Q ss_pred EEEcCccCCCC----------------------------CccccccCeEEEEECCCCcEEEcccCCCCC-CCccceEEEE
Q 005655 138 YIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVLY 188 (685)
Q Consensus 138 yvfGG~~~s~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rsgh~~v~~ 188 (685)
|||||...... ...+...+++++||+.+++|+.+.+ +|. +|.+|+++++
T Consensus 143 Yv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~--~p~~~~~~~a~v~~ 220 (376)
T PRK14131 143 YITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE--SPFLGTAGSAVVIK 220 (376)
T ss_pred EEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc--CCCCCCCcceEEEE
Confidence 99999753100 0000124789999999999999887 674 7899999999
Q ss_pred CCEEEEEccccCCCCceeeeceEE--EEEcCCCceEEeccCCCCCCCCCcc--------ceeEEEeCCEEEEEecccCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLY--VFDLDQFKWQEIKPRFGSMWPSPRS--------GFQFFVYQDEVFLYGGYSKEV 258 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~--~yD~~t~~W~~v~~~~~~~~P~~Rs--------~~s~~~~~~~Iyv~GG~~~~~ 258 (685)
+++||||||....+. ....++ .||+.+++|..+..+ |.+|. ++.+++++++|||+||....
T Consensus 221 ~~~iYv~GG~~~~~~---~~~~~~~~~~~~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~- 291 (376)
T PRK14131 221 GNKLWLINGEIKPGL---RTDAVKQGKFTGNNLKWQKLPDL-----PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFP- 291 (376)
T ss_pred CCEEEEEeeeECCCc---CChhheEEEecCCCcceeecCCC-----CCCCcCCcCCccceEeceeECCEEEEeeccCCC-
Confidence 999999999754321 234455 457789999999987 44442 33456779999999998643
Q ss_pred CcccCCCCCC--------ceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccC
Q 005655 259 STDKNQSEKG--------IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFL 330 (685)
Q Consensus 259 ~~~~~~~~~~--------~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ 330 (685)
........+ .....+.+||+.+++|+.+.. .|.+|.++++++++++||||||.... ...+
T Consensus 292 -~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~~r~~~~av~~~~~iyv~GG~~~~--------~~~~ 359 (376)
T PRK14131 292 -GARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE---LPQGLAYGVSVSWNNGVLLIGGETAG--------GKAV 359 (376)
T ss_pred -CChhhhhcCCcccccCCcceeehheEEecCCcccccCc---CCCCccceEEEEeCCEEEEEcCCCCC--------CcEe
Confidence 100000000 011346789999999998864 48899999999999999999997542 2357
Q ss_pred CcEEEEECCCCcEEE
Q 005655 331 NELYGFQLDNHRWYP 345 (685)
Q Consensus 331 ndl~~yd~~t~~W~~ 345 (685)
++|++|++..+.|..
T Consensus 360 ~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 360 SDVTLLSWDGKKLTV 374 (376)
T ss_pred eeEEEEEEcCCEEEE
Confidence 899999999887763
No 26
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=99.96 E-value=3.7e-30 Score=220.16 Aligned_cols=88 Identities=52% Similarity=0.721 Sum_probs=78.7
Q ss_pred hcCCCCCCCCCCCCCchhHHhhccHHHHHHHHHhcCC--CCcchhhHhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhC
Q 005655 588 NLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ--HTGKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAE 665 (685)
Q Consensus 588 ~~~~~d~~~~p~~~e~l~~f~~rt~~~w~~~~~~~~~--~~~k~l~~~~f~la~~r~~e~~~~l~~~~~le~~~~~~~~~ 665 (685)
+++++|.+|||+||||||+||+||++||+++|+++.. ++||+|||+||+||++|||||||+|++|+.++++|+..+
T Consensus 2 ~~~~~d~~ptP~p~EsLr~Ff~RT~~~W~~~a~~~~~~~~~~KeLrk~aF~lAe~Ry~E~k~~l~~le~~~ee~~~~e-- 79 (96)
T PF13422_consen 2 QPDLDDWLPTPKPFESLRDFFARTSEYWQEWAIESNRDAHRGKELRKDAFDLAEERYWELKPELDELEDLEEEQAGIE-- 79 (96)
T ss_pred CCCCccCCCCCCCCCcHHHHHHHhHHHHHHHHHHccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--
Confidence 5788999999999999999999999999999999887 789999999999999999999999999999999999888
Q ss_pred CCCccccccccc
Q 005655 666 GPETTSRKRGKK 677 (685)
Q Consensus 666 ~~~~~~~~~~~~ 677 (685)
+....++++++.
T Consensus 80 e~~~~~~~~~~~ 91 (96)
T PF13422_consen 80 EVVSRDKRKSWE 91 (96)
T ss_pred HHhhhccccccc
Confidence 444445555443
No 27
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=7.4e-29 Score=260.31 Aligned_cols=216 Identities=27% Similarity=0.570 Sum_probs=184.3
Q ss_pred CcEEEecC--CCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC-CCCCccceEEE
Q 005655 111 QEWKVISS--PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVL 187 (685)
Q Consensus 111 ~~W~~l~s--~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rsgh~~v~ 187 (685)
-.|+.+.. .+.|.||.+|-+|++..-|+||||-+.. ..+.+..||..+++|.-....|. |.+...|+.+.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-------iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-------IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCccc-------chhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 36887753 4458889999999999999999996554 46789999999999997766554 88889999999
Q ss_pred ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC--CCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCC
Q 005655 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR--FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (685)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~--~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (685)
.+.+||+|||+...+ +|.|++|.+......|.++.+. +.+..|.||.||++.+++++.|+|||.... .....+
T Consensus 90 dGtrilvFGGMvEYG---kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNd--seDpkn 164 (830)
T KOG4152|consen 90 DGTRILVFGGMVEYG---KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAND--SEDPKN 164 (830)
T ss_pred cCceEEEEccEeeec---cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccc--ccCccc
Confidence 999999999997654 4899999998889999999765 456789999999999999999999999876 444455
Q ss_pred CCCceeeeEEEEeCCC----ceeEEeecCCCCCCCcceeEEEEE------CCeEEEecceecccCCccccccccCCcEEE
Q 005655 266 EKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAGFSMCVH------KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (685)
Q Consensus 266 ~~~~~~~dv~~yd~~t----~~W~~~~~~g~~P~~R~g~s~~~~------~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~ 335 (685)
....+++|+|.+.+.. -.|......|..|.+|-.|+++++ ..++|||||.++ ..+.|||.
T Consensus 165 NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G----------~RLgDLW~ 234 (830)
T KOG4152|consen 165 NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG----------CRLGDLWT 234 (830)
T ss_pred ccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc----------ccccceeE
Confidence 5678999999999763 479999999999999999999998 357999999975 45899999
Q ss_pred EECCCCcEEEEEe
Q 005655 336 FQLDNHRWYPLEL 348 (685)
Q Consensus 336 yd~~t~~W~~l~~ 348 (685)
+|++|..|....+
T Consensus 235 Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 235 LDLDTLTWNKPSL 247 (830)
T ss_pred Eecceeecccccc
Confidence 9999999998776
No 28
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.81 E-value=1e-20 Score=199.33 Aligned_cols=264 Identities=22% Similarity=0.362 Sum_probs=189.9
Q ss_pred CCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC-CCCCcceeEEEEEC--CEEEEE
Q 005655 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSWK--NYLYIF 140 (685)
Q Consensus 64 ~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~~R~~ha~v~~~--~~iyvf 140 (685)
..|..|.||.++..+- .+.||++|| ++|-. .+.|+|.|+...+.|..+.... .|..|+.|-+|..- .+||+.
T Consensus 256 ~~p~~RgGHQMV~~~~-~~CiYLYGG--WdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLl 330 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQ-TECVYLYGG--WDGTQ--DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLL 330 (723)
T ss_pred cCccccCcceEEEeCC-CcEEEEecC--cccch--hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhh
Confidence 5789999999999974 379999999 56644 5789999999999999886554 78999999999985 489999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEccc----CCCCCCCccceEEEECCE--EEEEccccCCCCceeeeceEEEE
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL----KGCPSPRSGHRMVLYKHK--IIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~----~g~P~~Rsgh~~v~~~~~--lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
|-+..+...+.+..-.|+|+||..++.|..+.. .|.|...+.|.|++...+ ||||||..-... ...+.-+|.|
T Consensus 331 G~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~-e~~f~GLYaf 409 (723)
T KOG2437|consen 331 GRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCN-EPQFSGLYAF 409 (723)
T ss_pred hhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCC-CccccceEEE
Confidence 999888777777778999999999999998753 256999999999999776 999999864332 2246789999
Q ss_pred EcCCCceEEeccCC--CC---CCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 215 DLDQFKWQEIKPRF--GS---MWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 215 D~~t~~W~~v~~~~--~~---~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
|+....|..+...- .+ ..-..|.||+|-++ +..+|++||.... .-++-.+.|++....=..+
T Consensus 410 ~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~-----------~El~L~f~y~I~~E~~~~~ 478 (723)
T KOG2437|consen 410 NCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK-----------TELNLFFSYDIDSEHVDII 478 (723)
T ss_pred ecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc-----------eEEeehhcceeccccchhh
Confidence 99999998775431 11 11346888888776 8899999998765 4555567776543222211
Q ss_pred e---c--CCCCCCCcceeEEEEE---CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 288 K---K--IGMPPGPRAGFSMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 288 ~---~--~g~~P~~R~g~s~~~~---~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+ + ....|++- .+.-++. .++|.+.-|........ +....|.+|+|++.++.|..+..
T Consensus 479 s~~~k~dsS~~pS~~-f~qRs~~dp~~~~i~~~~G~~~~~~~~---e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 479 SDGTKKDSSMVPSTG-FTQRATIDPELNEIHVLSGLSKDKEKR---EENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred hccCcCccccCCCcc-hhhhcccCCCCcchhhhcccchhccCc---cccccCcEEEEEecccchhhHhh
Confidence 1 1 11122221 1111222 45666655543322111 23458999999999999987654
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=6e-17 Score=166.44 Aligned_cols=258 Identities=20% Similarity=0.298 Sum_probs=186.5
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCC--CcEEEecCCCCCCCcceeEEEEECCEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (685)
..+..|.+--+-+-..+ ++.+||-=|. .| ...|..|+.. ..|+.++.-+ -.+|.+..+++++++||
T Consensus 29 ~lPdlPvg~KnG~Ga~i---g~~~YVGLGs--~G------~afy~ldL~~~~k~W~~~a~Fp-G~~rnqa~~a~~~~kLy 96 (381)
T COG3055 29 QLPDLPVGFKNGAGALI---GDTVYVGLGS--AG------TAFYVLDLKKPGKGWTKIADFP-GGARNQAVAAVIGGKLY 96 (381)
T ss_pred cCCCCCcccccccccee---cceEEEEecc--CC------ccceehhhhcCCCCceEcccCC-CcccccchheeeCCeEE
Confidence 44566776655555566 6788876552 12 3567788765 4799998764 35899999999999999
Q ss_pred EEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECC-EEEEEccccCC----------------
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDT---------------- 201 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~-~lyv~GG~~~~---------------- 201 (685)
||||...+.. .....++++++||+.+++|.++.+. .|....+|.++.+++ .||++||++..
T Consensus 97 vFgG~Gk~~~-~~~~~~nd~Y~y~p~~nsW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~ 174 (381)
T COG3055 97 VFGGYGKSVS-SSPQVFNDAYRYDPSTNSWHKLDTR-SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDK 174 (381)
T ss_pred EeeccccCCC-CCceEeeeeEEecCCCChhheeccc-cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccH
Confidence 9999876554 3356799999999999999999874 388889999999988 99999997421
Q ss_pred --------------CCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCC
Q 005655 202 --------------LREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (685)
Q Consensus 202 --------------~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (685)
..+..+...|+.|+|.+++|..+...| -.+++|.+++.-++.|.++-|.-+.
T Consensus 175 ~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p----f~~~aGsa~~~~~n~~~lInGEiKp---------- 240 (381)
T COG3055 175 EAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP----FYGNAGSAVVIKGNKLTLINGEIKP---------- 240 (381)
T ss_pred HHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc----ccCccCcceeecCCeEEEEcceecC----------
Confidence 112346778999999999999988553 4677886666668889999998764
Q ss_pred CceeeeEEEEeCC--CceeEEeecCCCCCC----CcceeEEEEECCeEEEecceecccCC----------ccccccccCC
Q 005655 268 GIIHSDLWSLDPR--TWEWSKVKKIGMPPG----PRAGFSMCVHKKRALLFGGVVDMEMK----------GDVIMSLFLN 331 (685)
Q Consensus 268 ~~~~~dv~~yd~~--t~~W~~~~~~g~~P~----~R~g~s~~~~~~~iyvfGG~~~~~~~----------~~~~~~~~~n 331 (685)
+.....+++++.. ..+|..+.....++. ..+|+-.-..++.++|.||.+-.+.- .+.+.-.+.+
T Consensus 241 GLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~ 320 (381)
T COG3055 241 GLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS 320 (381)
T ss_pred CccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence 4556667777754 568999876432222 22333333457889999987543211 1235556778
Q ss_pred cEEEEECCCCcEEEEEe
Q 005655 332 ELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 332 dl~~yd~~t~~W~~l~~ 348 (685)
+||+|| ++.|..+.-
T Consensus 321 ~Vy~~d--~g~Wk~~Ge 335 (381)
T COG3055 321 EVYIFD--NGSWKIVGE 335 (381)
T ss_pred eEEEEc--CCceeeecc
Confidence 899999 889987654
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.62 E-value=1.6e-14 Score=148.65 Aligned_cols=254 Identities=19% Similarity=0.266 Sum_probs=177.1
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCCC-ceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECC-EEEEEcC
Q 005655 65 APSPRSNCSLNINPLKETELILYGGEFYNGN-KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGG 142 (685)
Q Consensus 65 ~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~-~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~-~iyvfGG 142 (685)
|-.+|.+...+++ +++||||||...... ....++++|+|||.+|+|.++.... |..-.+|+++.+++ .||++||
T Consensus 79 pG~~rnqa~~a~~---~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~~~~~~~~i~f~GG 154 (381)
T COG3055 79 PGGARNQAVAAVI---GGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGASTFSLNGTKIYFFGG 154 (381)
T ss_pred CCcccccchheee---CCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccccceeEecCCceEEEEcc
Confidence 4458899999999 899999999743332 3468999999999999999997654 67788999999976 9999999
Q ss_pred ccCCCCC----------------------------ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEE
Q 005655 143 EFTSPNQ----------------------------ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194 (685)
Q Consensus 143 ~~~s~~~----------------------------~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv 194 (685)
.+..... ..+.....|+.|++.++.|+.+... .-.+++|++.+.-+|+|.+
T Consensus 155 vn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~-pf~~~aGsa~~~~~n~~~l 233 (381)
T COG3055 155 VNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN-PFYGNAGSAVVIKGNKLTL 233 (381)
T ss_pred ccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC-cccCccCcceeecCCeEEE
Confidence 6422110 0122356899999999999988752 2467888666666888999
Q ss_pred EccccCCCCceeeeceEEEEEcC--CCceEEeccCCCCC--CCCCccceeEEEeCCEEEEEecccCCCCc--------cc
Q 005655 195 FGGFYDTLREVRYYNDLYVFDLD--QFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVST--------DK 262 (685)
Q Consensus 195 ~GG~~~~~~~~~~~~dv~~yD~~--t~~W~~v~~~~~~~--~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~--------~~ 262 (685)
+-|.--.+- ....+++++.. .-+|..+...|... -+....|+-.-..++.++|.||....-.. -.
T Consensus 234 InGEiKpGL---Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~A 310 (381)
T COG3055 234 INGEIKPGL---RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYA 310 (381)
T ss_pred EcceecCCc---cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhccccc
Confidence 988754332 24456666664 56899997764211 11334444444558899999987533000 00
Q ss_pred CCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
........+++||.|| .+.|..+.. +|.++++..++..++.+|++||.+... .....|+.+-..
T Consensus 311 H~Gl~K~w~~~Vy~~d--~g~Wk~~Ge---Lp~~l~YG~s~~~nn~vl~IGGE~~~G--------ka~~~v~~l~~~ 374 (381)
T COG3055 311 HEGLSKSWNSEVYIFD--NGSWKIVGE---LPQGLAYGVSLSYNNKVLLIGGETSGG--------KATTRVYSLSWD 374 (381)
T ss_pred ccchhhhhhceEEEEc--CCceeeecc---cCCCccceEEEecCCcEEEEccccCCC--------eeeeeEEEEEEc
Confidence 1122335678999999 889999855 577888888888899999999987643 334555555443
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.58 E-value=7e-16 Score=163.14 Aligned_cols=208 Identities=25% Similarity=0.462 Sum_probs=159.2
Q ss_pred CCcEEEecCC--------CCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCC
Q 005655 110 KQEWKVISSP--------NSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS 178 (685)
Q Consensus 110 ~~~W~~l~s~--------~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~ 178 (685)
+-.|.+++.. ..|..|.+|++|... +.||++||+++.. .+.|+|.|+...+.|+.+...+ .|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~------~l~DFW~Y~v~e~~W~~iN~~t~~PG 311 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ------DLADFWAYSVKENQWTCINRDTEGPG 311 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch------hHHHHHhhcCCcceeEEeecCCCCCc
Confidence 4567765432 468899999999985 4999999998864 4799999999999999987655 599
Q ss_pred CCccceEEEECC--EEEEEccccCCCCcee--eeceEEEEEcCCCceEEeccCCC-CCCCCCccceeEEEeCCE--EEEE
Q 005655 179 PRSGHRMVLYKH--KIIVFGGFYDTLREVR--YYNDLYVFDLDQFKWQEIKPRFG-SMWPSPRSGFQFFVYQDE--VFLY 251 (685)
Q Consensus 179 ~Rsgh~~v~~~~--~lyv~GG~~~~~~~~~--~~~dv~~yD~~t~~W~~v~~~~~-~~~P~~Rs~~s~~~~~~~--Iyv~ 251 (685)
.|+.|+||..-. +||+.|-+-+.++.+. .-.|+|.||+.++.|.-+..... ...|...+.|+|++.+++ |||+
T Consensus 312 ~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 312 ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEe
Confidence 999999998854 9999999987655433 35699999999999999876543 134889999999999666 9999
Q ss_pred ecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC-------CCCCCcceeEEEEE--CCeEEEecceecccCCc
Q 005655 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-------MPPGPRAGFSMCVH--KKRALLFGGVVDMEMKG 322 (685)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g-------~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~ 322 (685)
||..-.+. ...+.-+|.|+.....|..++.-- ..-..|.||.|-++ ++.+|+|||....
T Consensus 392 GGr~~~~~--------e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~---- 459 (723)
T KOG2437|consen 392 GGRILTCN--------EPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK---- 459 (723)
T ss_pred cCeeccCC--------CccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc----
Confidence 99876511 134567999999999999875310 01235888888777 6789999997532
Q ss_pred cccccccCCcEEEEECCC
Q 005655 323 DVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 323 ~~~~~~~~ndl~~yd~~t 340 (685)
+-++-+++|++..
T Consensus 460 -----~El~L~f~y~I~~ 472 (723)
T KOG2437|consen 460 -----TELNLFFSYDIDS 472 (723)
T ss_pred -----eEEeehhcceecc
Confidence 2255567776644
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.03 E-value=5.3e-10 Score=85.49 Aligned_cols=50 Identities=42% Similarity=0.591 Sum_probs=45.0
Q ss_pred CcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 124 ~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
||.+|++|+++++||||||.... ...++++|+||+.|++|+.+++ ||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~--mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----GKYSNDVERYDPETNTWEQLPP--MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----CCccccEEEEcCCCCcEEECCC--CCCCC
Confidence 69999999999999999998774 2367999999999999999998 88887
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.99 E-value=7.2e-10 Score=84.74 Aligned_cols=50 Identities=40% Similarity=0.833 Sum_probs=44.8
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCc
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (685)
||.+|++|+++++||||||.... ..+++++++||+.+++|++++++ |.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~m-----p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPM-----PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCC-----CCCC
Confidence 69999999999999999998764 34789999999999999999988 7666
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.84 E-value=7.4e-09 Score=78.79 Aligned_cols=49 Identities=39% Similarity=0.748 Sum_probs=41.6
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~ 188 (685)
+++||||||..... ...++++|+||+.+++|+++.. +|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~----~~~~nd~~~~~~~~~~W~~~~~--~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG----GTRLNDVWVFDLDTNTWTRIGD--LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCC----CCEecCEEEEECCCCEEEECCC--CCCCccceEEEEC
Confidence 57899999988422 2368999999999999999955 7999999999874
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.78 E-value=1.5e-08 Score=77.03 Aligned_cols=49 Identities=29% Similarity=0.579 Sum_probs=40.7
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW 133 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~ 133 (685)
+++||||||... .....+|++|+||+.+++|+.+ +..|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~--~~~~~~nd~~~~~~~~~~W~~~--~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDD--DGGTRLNDVWVFDLDTNTWTRI--GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCC--CCCCEecCEEEEECCCCEEEEC--CCCCCCccceEEEEC
Confidence 478999999742 2345789999999999999999 446899999999874
No 36
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.77 E-value=6.4e-07 Score=90.28 Aligned_cols=234 Identities=20% Similarity=0.240 Sum_probs=137.6
Q ss_pred eEEEee-cCCCCCCCCcceEEEE-eccCC--CEEEEEcCeecCCCceeeeccEEEEEcCCCc-EEEec--------CCCC
Q 005655 55 KEVHVE-DNVPAPSPRSNCSLNI-NPLKE--TELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVIS--------SPNS 121 (685)
Q Consensus 55 ~~~~~~-~~~~~P~~R~~~s~~~-~p~~~--~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~-W~~l~--------s~~~ 121 (685)
..+... ..+-.|+.|.-+.+.. .|..+ ...+|.||...|+. ..+.+|+....+.. =++++ .+..
T Consensus 8 rp~sFsndSCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE---lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdv 84 (337)
T PF03089_consen 8 RPISFSNDSCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE---LSSSLYILSVDSRGCNKKVTLCCQEKELVGDV 84 (337)
T ss_pred cceeecCCcccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc---cccceEEEEeecCCCCceeEEEEecceecCCC
Confidence 334442 4457777777666555 33322 34667788766554 67789998876543 11221 2457
Q ss_pred CCCcceeEEEEE----CCEEEEEcCccCCCCCc--------cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEEC
Q 005655 122 PPPRSAHQAVSW----KNYLYIFGGEFTSPNQE--------RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189 (685)
Q Consensus 122 P~~R~~ha~v~~----~~~iyvfGG~~~s~~~~--------~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~ 189 (685)
|.+|++|++.++ ...+++|||...-+... ...+.-.|+.+|+.-+.++.-..+-+..+-+.|.+.+-+
T Consensus 85 P~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~ 164 (337)
T PF03089_consen 85 PEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARN 164 (337)
T ss_pred CcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecC
Confidence 899999999887 24589999975433221 223456789999999888766554467889999999999
Q ss_pred CEEEEEccccCCCCceeeeceEEEEEcC---CCceEEeccCCCCCCCCCccceeEEEe---CCEEEEEecccCCCCcccC
Q 005655 190 HKIIVFGGFYDTLREVRYYNDLYVFDLD---QFKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKN 263 (685)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~---t~~W~~v~~~~~~~~P~~Rs~~s~~~~---~~~Iyv~GG~~~~~~~~~~ 263 (685)
+.+|++||..-... . ....++++... -.-+-..... +...+-.++++. .+..+|+|||... .
T Consensus 165 D~VYilGGHsl~sd-~-Rpp~l~rlkVdLllGSP~vsC~vl-----~~glSisSAIvt~~~~~e~iIlGGY~sd--s--- 232 (337)
T PF03089_consen 165 DCVYILGGHSLESD-S-RPPRLYRLKVDLLLGSPAVSCTVL-----QGGLSISSAIVTQTGPHEYIILGGYQSD--S--- 232 (337)
T ss_pred ceEEEEccEEccCC-C-CCCcEEEEEEeecCCCceeEEEEC-----CCCceEeeeeEeecCCCceEEEeccccc--c---
Confidence 99999999864321 1 12334444221 1112222222 233333333332 6789999999876 1
Q ss_pred CCCCCceeeeEEEEe--------CCCceeEEeecCCCCCCCcceeEEEEECCeEEE
Q 005655 264 QSEKGIIHSDLWSLD--------PRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALL 311 (685)
Q Consensus 264 ~~~~~~~~~dv~~yd--------~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyv 311 (685)
++....+ ...+| ...-.|+.- .-..|..++..+-+|.+++
T Consensus 233 --QKRm~C~-~V~Ldd~~I~ie~~E~P~Wt~d-----I~hSrtWFGgs~G~G~~Li 280 (337)
T PF03089_consen 233 --QKRMECN-TVSLDDDGIHIEEREPPEWTGD-----IKHSRTWFGGSMGKGSALI 280 (337)
T ss_pred --eeeeeee-EEEEeCCceEeccCCCCCCCCC-----cCcCccccccccCCceEEE
Confidence 1122222 22233 344456532 2346777777666666544
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.72 E-value=2.5e-08 Score=75.91 Aligned_cols=48 Identities=42% Similarity=0.752 Sum_probs=41.3
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
||++|++++++++||||||+ .......+.+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~-~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGY-GTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCc-ccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 1222245799999999999999999876
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.71 E-value=2.3e-08 Score=75.14 Aligned_cols=46 Identities=37% Similarity=0.673 Sum_probs=41.4
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
||++|++++++++||||||+... ..+++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN---NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST---SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc---CceeeeEEEEeCCCCEEEEcCCC
Confidence 69999999999999999999872 34799999999999999999887
No 39
>PF13854 Kelch_5: Kelch motif
Probab=98.70 E-value=1.3e-08 Score=74.75 Aligned_cols=41 Identities=29% Similarity=0.559 Sum_probs=36.0
Q ss_pred CCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCC
Q 005655 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (685)
Q Consensus 450 ~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~k 492 (685)
+|.||.+|+++++++.||||||... .....+||||.|||..
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCC
Confidence 4999999999999999999999984 3446799999999975
No 40
>PLN02772 guanylate kinase
Probab=98.68 E-value=8e-08 Score=103.35 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=75.4
Q ss_pred CCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEeccc
Q 005655 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (685)
Q Consensus 177 P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~ 255 (685)
+.++.+|+++++++++|||||.++.+ ...+.|++||+.+.+|...... |..|.||.||+++++ +++|+|+++.+
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~---~~~~~v~i~D~~t~~W~~P~V~--G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGN---TLSIGVQILDKITNNWVSPIVL--GTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCc---cccceEEEEECCCCcEeccccc--CCCCCCCCcceEEEECCceEEEEeCCC
Confidence 56899999999999999999987632 2579999999999999998877 778999999999999 89999999876
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
.. ..++|+|.+.|.
T Consensus 97 ~~-------------~~~~w~l~~~t~ 110 (398)
T PLN02772 97 AP-------------DDSIWFLEVDTP 110 (398)
T ss_pred CC-------------ccceEEEEcCCH
Confidence 43 377999987653
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.68 E-value=2.7e-08 Score=75.62 Aligned_cols=45 Identities=42% Similarity=0.845 Sum_probs=30.5
Q ss_pred CcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEccc
Q 005655 124 PRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 124 ~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
||++|+++.+ ++.||||||..... ..++++|+||+.+++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~-----~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG-----SPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T-----EE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC-----cccCCEEEEECCCCEEEECCC
Confidence 6999999999 58999999998753 368999999999999999965
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.68 E-value=3.3e-08 Score=75.11 Aligned_cols=46 Identities=35% Similarity=0.646 Sum_probs=31.4
Q ss_pred CCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 179 ~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
||.+|+++.+ +++||||||..... .+++++|+||+.+++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCC
Confidence 6999999999 58999999997653 5799999999999999999665
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.64 E-value=4.5e-08 Score=73.55 Aligned_cols=45 Identities=36% Similarity=0.505 Sum_probs=40.0
Q ss_pred CcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEccc
Q 005655 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 124 ~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
||++|+++++++.|||+||.... ...++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN-----NQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST-----SSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc-----CceeeeEEEEeCCCCEEEEcCC
Confidence 69999999999999999999873 2368999999999999999987
No 44
>PLN02772 guanylate kinase
Probab=98.63 E-value=1.5e-07 Score=101.35 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=73.9
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
+.|+.+++++.+++++||+||.... +...+.+|+||+.+.+|......|.+|.+|.||++|++ +++|+|
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~----------~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv 91 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEG----------NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILV 91 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCC----------ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEE
Confidence 5688999999999999999997654 34678999999999999999999999999999999999 789999
Q ss_pred ecceecccCCccccccccCCcEEEEECCC
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
+++.... -.++|.+.+.|
T Consensus 92 ~~~~~~~-----------~~~~w~l~~~t 109 (398)
T PLN02772 92 IKKGSAP-----------DDSIWFLEVDT 109 (398)
T ss_pred EeCCCCC-----------ccceEEEEcCC
Confidence 9876542 24577666654
No 45
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.60 E-value=1.2e-07 Score=72.12 Aligned_cols=46 Identities=37% Similarity=0.697 Sum_probs=39.1
Q ss_pred CcceeEEEEECCEEEEEcCc-cCCCCCccccccCeEEEEECCCCcEEEccc
Q 005655 124 PRSAHQAVSWKNYLYIFGGE-FTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 124 ~R~~ha~v~~~~~iyvfGG~-~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
||++|++++++++||||||. .... ....+++++||+.+++|+.+++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~----~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNG----GSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCC----CcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 1111 2357999999999999999987
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.57 E-value=1.1e-07 Score=69.79 Aligned_cols=42 Identities=48% Similarity=0.883 Sum_probs=36.3
Q ss_pred CCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 176 CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 176 ~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.|.+|++|++++++++||||||+.. ....+++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCCC
Confidence 3889999999999999999999975 23457999999999764
No 47
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.48 E-value=4.3e-06 Score=84.45 Aligned_cols=129 Identities=21% Similarity=0.286 Sum_probs=84.1
Q ss_pred CCCCcceeEEEEE---C---CEEEEEcCccCCCCCccccccCeEEEEECCCCc--------EEEcccCC-CCCCCccceE
Q 005655 121 SPPPRSAHQAVSW---K---NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--------WEQLNLKG-CPSPRSGHRM 185 (685)
Q Consensus 121 ~P~~R~~ha~v~~---~---~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--------W~~~~~~g-~P~~Rsgh~~ 185 (685)
.|+.|+-..+..- + ...+|+||...+.. ..+.+|++...+.. +..-...| .|.+|+||++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE-----lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~ 93 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE-----LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTI 93 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc-----cccceEEEEeecCCCCceeEEEEecceecCCCCcccccceE
Confidence 4556654433331 1 35677899877643 45778888776543 22212222 4999999999
Q ss_pred EEE----CCEEEEEccccCCC---Ccee-------eeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEE
Q 005655 186 VLY----KHKIIVFGGFYDTL---REVR-------YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251 (685)
Q Consensus 186 v~~----~~~lyv~GG~~~~~---~~~~-------~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~ 251 (685)
-++ +.-+++|||..... +.+. ....|+.+|++-..++.-..+ .+..+.+.|.+.+-++.+|++
T Consensus 94 ~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp---El~dG~SFHvslar~D~VYil 170 (337)
T PF03089_consen 94 NVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP---ELQDGQSFHVSLARNDCVYIL 170 (337)
T ss_pred EEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch---hhcCCeEEEEEEecCceEEEE
Confidence 877 45689999975311 1111 234678889988877765544 235677888888889999999
Q ss_pred ecccCC
Q 005655 252 GGYSKE 257 (685)
Q Consensus 252 GG~~~~ 257 (685)
||..-.
T Consensus 171 GGHsl~ 176 (337)
T PF03089_consen 171 GGHSLE 176 (337)
T ss_pred ccEEcc
Confidence 998754
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.34 E-value=0.00011 Score=74.80 Aligned_cols=204 Identities=15% Similarity=0.221 Sum_probs=117.8
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcc-ee-EEEEEC-----CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEccc
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRS-AH-QAVSWK-----NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~-~h-a~v~~~-----~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
..++++||.|++|+.++.+..|.... .+ ....++ -+|+.+...... .....+.+|++.+++|+.+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~------~~~~~~~Vys~~~~~Wr~~~~ 87 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN------RNQSEHQVYTLGSNSWRTIEC 87 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC------CCCccEEEEEeCCCCcccccc
Confidence 36899999999999997653221111 11 111121 134444332111 022468899999999999874
Q ss_pred CCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEE-eccCCCCCCCCCccceeEEEeCCEEEEEe
Q 005655 174 KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (685)
Q Consensus 174 ~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~G 252 (685)
.. +........+.+++.||-+.-..... ....|..||+.+.+|.. ++.++. .........++.++++|.++.
T Consensus 88 ~~-~~~~~~~~~v~~~G~lyw~~~~~~~~----~~~~IvsFDl~~E~f~~~i~~P~~--~~~~~~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 88 SP-PHHPLKSRGVCINGVLYYLAYTLKTN----PDYFIVSFDVSSERFKEFIPLPCG--NSDSVDYLSLINYKGKLAVLK 160 (230)
T ss_pred CC-CCccccCCeEEECCEEEEEEEECCCC----CcEEEEEEEcccceEeeeeecCcc--ccccccceEEEEECCEEEEEE
Confidence 22 22122233778899999987543211 11269999999999995 654311 011122345666688888876
Q ss_pred cccCCCCcccCCCCCCceeeeEEEEe-CCCceeEEeecCCCCCCCcce----eEEEEECCeEEEecceecccCCcccccc
Q 005655 253 GYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAG----FSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (685)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~~~~~g~~P~~R~g----~s~~~~~~~iyvfGG~~~~~~~~~~~~~ 327 (685)
..... ..-++|+++ -....|+++-....++.++.. ...+..++.|+|..+...
T Consensus 161 ~~~~~------------~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---------- 218 (230)
T TIGR01640 161 QKKDT------------NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---------- 218 (230)
T ss_pred ecCCC------------CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC----------
Confidence 54321 114699996 445679987554332222221 344556888888665310
Q ss_pred ccCCcEEEEECCCC
Q 005655 328 LFLNELYGFQLDNH 341 (685)
Q Consensus 328 ~~~ndl~~yd~~t~ 341 (685)
..-+..||+.++
T Consensus 219 --~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 --PFYIFYYNVGEN 230 (230)
T ss_pred --ceEEEEEeccCC
Confidence 113889998875
No 49
>smart00612 Kelch Kelch domain.
Probab=98.25 E-value=1.4e-06 Score=64.78 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=40.1
Q ss_pred EEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECC
Q 005655 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH 190 (685)
Q Consensus 136 ~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~ 190 (685)
+|||+||.... ..++++++||+.+++|+.+++ ||.+|.+|+++++++
T Consensus 1 ~iyv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG------QRLKSVEVYDPETNKWTPLPS--MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC------ceeeeEEEECCCCCeEccCCC--CCCccccceEEEeCC
Confidence 48999998542 247899999999999999987 899999999988764
No 50
>smart00612 Kelch Kelch domain.
Probab=98.17 E-value=2.3e-06 Score=63.71 Aligned_cols=47 Identities=34% Similarity=0.589 Sum_probs=39.8
Q ss_pred EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCC
Q 005655 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQD 246 (685)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~ 246 (685)
+|||+||+.. ...++++++||+.+++|+.++++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~-----~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG----GQRLKSVEVYDPETNKWTPLPSM-----PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC----CceeeeEEEECCCCCeEccCCCC-----CCccccceEEEeCC
Confidence 4899999854 23588999999999999999877 89999999887753
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.99 E-value=0.00029 Score=71.90 Aligned_cols=150 Identities=12% Similarity=0.110 Sum_probs=93.2
Q ss_pred EEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCC----CcEEEcccCCCCC
Q 005655 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQLNLKGCPS 178 (685)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t----~~W~~~~~~g~P~ 178 (685)
-..||+.+++++.+.... -.-|+..++.-+|.++++||.... .+.+-.|++.+ ..|...... |-.
T Consensus 48 s~~yD~~tn~~rpl~v~t--d~FCSgg~~L~dG~ll~tGG~~~G--------~~~ir~~~p~~~~~~~~w~e~~~~-m~~ 116 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQT--DTFCSGGAFLPDGRLLQTGGDNDG--------NKAIRIFTPCTSDGTCDWTESPND-MQS 116 (243)
T ss_pred EEEEecCCCcEEeccCCC--CCcccCcCCCCCCCEEEeCCCCcc--------ccceEEEecCCCCCCCCceECccc-ccC
Confidence 457999999999876532 122222222337899999998653 24566777765 579887654 789
Q ss_pred CCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCC--CceEEeccCC--CCCCCCCccceeEEEeCCEEEEEec
Q 005655 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--FKWQEIKPRF--GSMWPSPRSGFQFFVYQDEVFLYGG 253 (685)
Q Consensus 179 ~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t--~~W~~v~~~~--~~~~P~~Rs~~s~~~~~~~Iyv~GG 253 (685)
+|...+++.+ ++.++|+||... ...+.|.... .....+.... ....+...+=+..+.-++.||+++.
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~--------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNN--------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred CCccccceECCCCCEEEEeCcCC--------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 9999999888 789999999752 1223333211 1112221110 0112334444445555999999988
Q ss_pred ccCCCCcccCCCCCCceeeeEEEEeCCCcee-EEeec
Q 005655 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW-SKVKK 289 (685)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W-~~~~~ 289 (685)
.. .++||+.++++ ..++.
T Consensus 189 ~~------------------s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 189 RG------------------SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred CC------------------cEEEeCCCCeEEeeCCC
Confidence 64 44889999977 44444
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.83 E-value=0.00045 Score=70.50 Aligned_cols=152 Identities=15% Similarity=0.138 Sum_probs=95.1
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC----CceEEeccCCCC
Q 005655 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ----FKWQEIKPRFGS 230 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t----~~W~~v~~~~~~ 230 (685)
...--.||+.|++++.+...- -.-.++|+ +.-++.+++.||..+. ...+-.|++.+ ..|......
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~t-d~FCSgg~-~L~dG~ll~tGG~~~G------~~~ir~~~p~~~~~~~~w~e~~~~--- 113 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQT-DTFCSGGA-FLPDGRLLQTGGDNDG------NKAIRIFTPCTSDGTCDWTESPND--- 113 (243)
T ss_pred eEEEEEEecCCCcEEeccCCC-CCcccCcC-CCCCCCEEEeCCCCcc------ccceEEEecCCCCCCCCceECccc---
Confidence 344568999999999887521 22333442 3348899999998663 34566677754 678877542
Q ss_pred CCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC------CceeEEeecCC-CCCCCcceeEE
Q 005655 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------TWEWSKVKKIG-MPPGPRAGFSM 302 (685)
Q Consensus 231 ~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------t~~W~~~~~~g-~~P~~R~g~s~ 302 (685)
+-.+|...++..+ ++.++|+||.... .+.|-|. ...|..+.... ..|..-+-+..
T Consensus 114 -m~~~RWYpT~~~L~DG~vlIvGG~~~~----------------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ 176 (243)
T PF07250_consen 114 -MQSGRWYPTATTLPDGRVLIVGGSNNP----------------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVH 176 (243)
T ss_pred -ccCCCccccceECCCCCEEEEeCcCCC----------------cccccCCccCCCCceeeecchhhhccCccccCceEE
Confidence 3789999999888 9999999998632 1222222 12232222110 11222222333
Q ss_pred EEECCeEEEecceecccCCccccccccCCcEEEEECCCCcE-EEEEecC
Q 005655 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW-YPLELRK 350 (685)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W-~~l~~~~ 350 (685)
+.-+|+||+|+.. .-.+||..++.+ ..++..+
T Consensus 177 llPdG~lFi~an~----------------~s~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 177 LLPDGNLFIFANR----------------GSIIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred EcCCCCEEEEEcC----------------CcEEEeCCCCeEEeeCCCCC
Confidence 4448999999975 357889999977 5666533
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.55 E-value=0.018 Score=63.49 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=107.7
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCC-C-----CCCcceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN-S-----PPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~-~-----P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++.||+.+.. ..+++||..++ .|+.-.... . +.++...+.++.++.||+.+.
T Consensus 69 ~~~vy~~~~~----------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---------- 128 (394)
T PRK11138 69 YNKVYAADRA----------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---------- 128 (394)
T ss_pred CCEEEEECCC----------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----------
Confidence 7888887652 36899998876 487432210 0 012223345666888887442
Q ss_pred cccCeEEEEECCCC--cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEeccCC
Q 005655 153 HHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRF 228 (685)
Q Consensus 153 ~~~~dv~~yD~~t~--~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~ 228 (685)
-..++.||..|+ .|+.-.. .+ ...+-++.++.||+..+ ...++.||+.+.+ |+.-...+
T Consensus 129 --~g~l~ald~~tG~~~W~~~~~----~~-~~ssP~v~~~~v~v~~~----------~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 129 --KGQVYALNAEDGEVAWQTKVA----GE-ALSRPVVSDGLVLVHTS----------NGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred --CCEEEEEECCCCCCcccccCC----Cc-eecCCEEECCEEEEECC----------CCEEEEEEccCCCEeeeecCCCC
Confidence 146899999887 4876432 11 12233556888887543 2468999998765 87654321
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecC--CCCCC---CcceeE
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKI--GMPPG---PRAGFS 301 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~--g~~P~---~R~g~s 301 (685)
. ...+...+.++.++.+|+..+ .+ .++.+|+.+. .|+..... +.... .....+
T Consensus 192 ~---~~~~~~~sP~v~~~~v~~~~~-~g----------------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 192 S---LTLRGESAPATAFGGAIVGGD-NG----------------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred c---ccccCCCCCEEECCEEEEEcC-CC----------------EEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 0 111222233445666666432 22 2667777654 57653211 00000 011234
Q ss_pred EEEECCeEEEecceecccCCccccccccCCcEEEEECCCC--cEEE
Q 005655 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (685)
Q Consensus 302 ~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (685)
.++.++.+|+.+.. ..++++|+.+. .|..
T Consensus 252 P~v~~~~vy~~~~~---------------g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 252 PVVVGGVVYALAYN---------------GNLVALDLRSGQIVWKR 282 (394)
T ss_pred cEEECCEEEEEEcC---------------CeEEEEECCCCCEEEee
Confidence 55678888875531 34999999876 5764
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.54 E-value=0.029 Score=61.90 Aligned_cols=169 Identities=15% Similarity=0.125 Sum_probs=95.0
Q ss_pred cEEEEEcCCCc--EEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCCC
Q 005655 102 DLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP 177 (685)
Q Consensus 102 dv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P 177 (685)
.++.||+.+++ |+.-...+....+...+-++.++.+|+.++. ..++.+|+.++. |+.-.. .|
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~------------g~v~a~d~~~G~~~W~~~~~--~~ 236 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN------------GRVSAVLMEQGQLIWQQRIS--QP 236 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC------------CEEEEEEccCChhhheeccc--cC
Confidence 58888988775 7753321111112223334456666664331 357788888764 864321 11
Q ss_pred CC--------CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCE
Q 005655 178 SP--------RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (685)
Q Consensus 178 ~~--------Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~ 247 (685)
.. ....+.++.++.||+.+. ...++++|+.+.+ |+.-.. .+ ..+++.++.
T Consensus 237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~----------~g~l~ald~~tG~~~W~~~~~-------~~---~~~~~~~~~ 296 (394)
T PRK11138 237 TGATEIDRLVDVDTTPVVVGGVVYALAY----------NGNLVALDLRSGQIVWKREYG-------SV---NDFAVDGGR 296 (394)
T ss_pred CCccchhcccccCCCcEEECCEEEEEEc----------CCeEEEEECCCCCEEEeecCC-------Cc---cCcEEECCE
Confidence 11 112334566888887643 2468999998764 875311 11 134566888
Q ss_pred EEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCcccc
Q 005655 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (685)
Q Consensus 248 Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~ 325 (685)
||+.... ..++++|+.+. .|..-.. ..+...+.++.+++||+....
T Consensus 297 vy~~~~~-----------------g~l~ald~~tG~~~W~~~~~-----~~~~~~sp~v~~g~l~v~~~~---------- 344 (394)
T PRK11138 297 IYLVDQN-----------------DRVYALDTRGGVELWSQSDL-----LHRLLTAPVLYNGYLVVGDSE---------- 344 (394)
T ss_pred EEEEcCC-----------------CeEEEEECCCCcEEEccccc-----CCCcccCCEEECCEEEEEeCC----------
Confidence 8886532 23888888765 5764321 123334456678888875321
Q ss_pred ccccCCcEEEEECCCC
Q 005655 326 MSLFLNELYGFQLDNH 341 (685)
Q Consensus 326 ~~~~~ndl~~yd~~t~ 341 (685)
..|+++|+.+.
T Consensus 345 -----G~l~~ld~~tG 355 (394)
T PRK11138 345 -----GYLHWINREDG 355 (394)
T ss_pred -----CEEEEEECCCC
Confidence 24888888765
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.46 E-value=0.13 Score=51.95 Aligned_cols=187 Identities=20% Similarity=0.255 Sum_probs=107.2
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.||+..+ .+.|++||+.+++ |+.-.. .+.....+..++.|||..+. +.+
T Consensus 36 ~~~v~~~~~----------~~~l~~~d~~tG~~~W~~~~~-----~~~~~~~~~~~~~v~v~~~~------------~~l 88 (238)
T PF13360_consen 36 GGRVYVASG----------DGNLYALDAKTGKVLWRFDLP-----GPISGAPVVDGGRVYVGTSD------------GSL 88 (238)
T ss_dssp TTEEEEEET----------TSEEEEEETTTSEEEEEEECS-----SCGGSGEEEETTEEEEEETT------------SEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEeecc-----ccccceeeecccccccccce------------eee
Confidence 688888743 2479999998874 765431 11222246678899887631 369
Q ss_pred EEEECCCCc--EEE-cccCCCCC-CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEeccCCCCCC
Q 005655 159 WMLDLKTNQ--WEQ-LNLKGCPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMW 232 (685)
Q Consensus 159 ~~yD~~t~~--W~~-~~~~g~P~-~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~ 232 (685)
+.||..++. |+. .... .+. .+.....++.++.+|+... ...++++|+.+.+ |......+....
T Consensus 89 ~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTS----------SGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTTSCEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEET----------CSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred EecccCCcceeeeeccccc-cccccccccCceEecCEEEEEec----------cCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 999988874 984 4331 122 2344455556777777653 2578999998764 776543311100
Q ss_pred CC---CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce--eEEeecCCCCCCCcceeEEEEECC
Q 005655 233 PS---PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKK 307 (685)
Q Consensus 233 P~---~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~~~~~g~~P~~R~g~s~~~~~~ 307 (685)
+. .......+..++.||+..+... +..+|..+.. |+.. ..+ ....+...++
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~-----------------~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~ 213 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGR-----------------VVAVDLATGEKLWSKP-ISG------IYSLPSVDGG 213 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSS-----------------EEEEETTTTEEEEEEC-SS-------ECECEECCCT
T ss_pred ceeeecccccceEEECCEEEEEcCCCe-----------------EEEEECCCCCEEEEec-CCC------ccCCceeeCC
Confidence 00 1112333444677887765431 4566888876 7433 211 1112344467
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCC--cEE
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWY 344 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~ 344 (685)
.+|+.. . .+.|++||+.|. .|.
T Consensus 214 ~l~~~~-~--------------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 214 TLYVTS-S--------------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEE-T--------------TTEEEEEETTTTEEEEE
T ss_pred EEEEEe-C--------------CCEEEEEECCCCCEEeE
Confidence 777666 2 245999999987 454
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.14 E-value=0.21 Score=54.60 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=90.4
Q ss_pred cEEEEEcCCC--cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCC--cEEEcccCCCC
Q 005655 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP 177 (685)
Q Consensus 102 dv~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g~P 177 (685)
.+++||+.++ .|+.-........+...+.++.++.+| +|.. -..++.+|+.++ .|+.-.. .|
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~-~~~~-----------~g~v~ald~~tG~~~W~~~~~--~~ 221 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVL-VGFA-----------GGKLVALDLQTGQPLWEQRVA--LP 221 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEE-EECC-----------CCEEEEEEccCCCEeeeeccc--cC
Confidence 5889998876 477433221101122334455566554 3332 135888998876 4864322 12
Q ss_pred CCC--------ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCE
Q 005655 178 SPR--------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (685)
Q Consensus 178 ~~R--------sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~ 247 (685)
..+ .....++.++.||+.+. ...+++||+.+.+ |..-. + ...+.++.++.
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~----------~g~l~a~d~~tG~~~W~~~~-------~---~~~~p~~~~~~ 281 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSY----------QGRVAALDLRSGRVLWKRDA-------S---SYQGPAVDDNR 281 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEc----------CCEEEEEECCCCcEEEeecc-------C---CccCceEeCCE
Confidence 111 12233456778877543 2468999987653 75531 1 11234456888
Q ss_pred EEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCcccc
Q 005655 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (685)
Q Consensus 248 Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~ 325 (685)
||+... .+ .++++|+.+. .|..... ..+...+.++.+++||+.. .
T Consensus 282 vyv~~~-~G----------------~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~-~---------- 328 (377)
T TIGR03300 282 LYVTDA-DG----------------VVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGD-F---------- 328 (377)
T ss_pred EEEECC-CC----------------eEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEe-C----------
Confidence 887642 11 3788887654 5765321 1122234455677777643 2
Q ss_pred ccccCCcEEEEECCCC
Q 005655 326 MSLFLNELYGFQLDNH 341 (685)
Q Consensus 326 ~~~~~ndl~~yd~~t~ 341 (685)
...|+++|+.+.
T Consensus 329 ----~G~l~~~d~~tG 340 (377)
T TIGR03300 329 ----EGYLHWLSREDG 340 (377)
T ss_pred ----CCEEEEEECCCC
Confidence 134888887654
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.04 E-value=0.14 Score=55.98 Aligned_cols=188 Identities=14% Similarity=0.124 Sum_probs=101.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.||+.+.. ..|++||+.+++ |+.-... +...+.++.++.+|+.+. -..+
T Consensus 65 ~~~v~v~~~~----------g~v~a~d~~tG~~~W~~~~~~-----~~~~~p~v~~~~v~v~~~------------~g~l 117 (377)
T TIGR03300 65 GGKVYAADAD----------GTVVALDAETGKRLWRVDLDE-----RLSGGVGADGGLVFVGTE------------KGEV 117 (377)
T ss_pred CCEEEEECCC----------CeEEEEEccCCcEeeeecCCC-----CcccceEEcCCEEEEEcC------------CCEE
Confidence 6777765541 369999988764 8743221 112233445677776442 1468
Q ss_pred EEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC--ceEEeccCCCCCCCC
Q 005655 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPS 234 (685)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~ 234 (685)
+.||+.++. |+.-.. .. .....++.++.+|+..+ ...+++||+.+. .|+.-...+. ..
T Consensus 118 ~ald~~tG~~~W~~~~~----~~-~~~~p~v~~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~~---~~ 179 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS----SE-VLSPPLVANGLVVVRTN----------DGRLTALDAATGERLWTYSRVTPA---LT 179 (377)
T ss_pred EEEECCCCcEeeeeccC----ce-eecCCEEECCEEEEECC----------CCeEEEEEcCCCceeeEEccCCCc---ee
Confidence 999988764 875432 11 12333456777777543 245899998765 4775433210 11
Q ss_pred CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCC--CCCCCc---ceeEEEEECC
Q 005655 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIG--MPPGPR---AGFSMCVHKK 307 (685)
Q Consensus 235 ~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g--~~P~~R---~g~s~~~~~~ 307 (685)
.+...+.++.++.+ ++|...+ .++.+|+.+. .|+.....+ .....| ...+.++.++
T Consensus 180 ~~~~~sp~~~~~~v-~~~~~~g----------------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 180 LRGSASPVIADGGV-LVGFAGG----------------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred ecCCCCCEEECCEE-EEECCCC----------------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 12233444556644 4444332 3778887654 676532110 000011 1233455677
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCC--cEEE
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (685)
.+|+.+. ...+++||+.+. .|..
T Consensus 243 ~vy~~~~---------------~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 243 QVYAVSY---------------QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEEc---------------CCEEEEEECCCCcEEEee
Confidence 7777542 134999998775 5654
No 58
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.03 E-value=0.051 Score=55.18 Aligned_cols=164 Identities=14% Similarity=0.101 Sum_probs=92.4
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccc--eEEEE----CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGH--RMVLY----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh--~~v~~----~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
..+.++||.|++|..++....+...... ....+ +. +|+.+...... .....+.+|++.++.|..+...+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~----~~~~~~~Vys~~~~~Wr~~~~~~ 89 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN----RNQSEHQVYTLGSNSWRTIECSP 89 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC----CCCccEEEEEeCCCCccccccCC
Confidence 3588999999999999763221111111 11112 12 34444332111 12357899999999999988542
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE-eecCCCCCCCcceeEEEEECC
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK-VKKIGMPPGPRAGFSMCVHKK 307 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~-~~~~g~~P~~R~g~s~~~~~~ 307 (685)
+........+.++|.||-+...... .....+..||+.+.+|.. +..+...........++.++|
T Consensus 90 ----~~~~~~~~~v~~~G~lyw~~~~~~~-----------~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G 154 (230)
T TIGR01640 90 ----PHHPLKSRGVCINGVLYYLAYTLKT-----------NPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKG 154 (230)
T ss_pred ----CCccccCCeEEECCEEEEEEEECCC-----------CCcEEEEEEEcccceEeeeeecCccccccccceEEEEECC
Confidence 1111122255679999988744321 111258899999999994 543111001122345667789
Q ss_pred eEEEecceecccCCccccccccCCcEEEEE-CCCCcEEEEEe
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQ-LDNHRWYPLEL 348 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd-~~t~~W~~l~~ 348 (685)
+|.++...... ..-+||+.+ -....|+++-.
T Consensus 155 ~L~~v~~~~~~----------~~~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 155 KLAVLKQKKDT----------NNFDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred EEEEEEecCCC----------CcEEEEEECCCCCCceeEEEE
Confidence 98887654220 013677776 44567987544
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.01 E-value=0.21 Score=50.29 Aligned_cols=175 Identities=22% Similarity=0.274 Sum_probs=101.6
Q ss_pred ccEEEEEcCCCc--EEEecCCCCCCCcceeE--EEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccC
Q 005655 101 GDLYRYDVEKQE--WKVISSPNSPPPRSAHQ--AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLK 174 (685)
Q Consensus 101 ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha--~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~ 174 (685)
+.|.+||+.+++ |+.-.. + +..+.. .+..++.+|+..+ ...+++||+.+++ |+.-..
T Consensus 3 g~l~~~d~~tG~~~W~~~~~---~-~~~~~~~~~~~~~~~v~~~~~------------~~~l~~~d~~tG~~~W~~~~~- 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG---P-GIGGPVATAVPDGGRVYVASG------------DGNLYALDAKTGKVLWRFDLP- 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS---S-SCSSEEETEEEETTEEEEEET------------TSEEEEEETTTSEEEEEEECS-
T ss_pred CEEEEEECCCCCEEEEEECC---C-CCCCccceEEEeCCEEEEEcC------------CCEEEEEECCCCCEEEEeecc-
Confidence 357889987764 875221 1 122222 3346899999843 2679999998885 776432
Q ss_pred CCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC--ceE-EeccCCCCCCCC-CccceeEEEeCCEEEE
Q 005655 175 GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQ-EIKPRFGSMWPS-PRSGFQFFVYQDEVFL 250 (685)
Q Consensus 175 g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~-~v~~~~~~~~P~-~Rs~~s~~~~~~~Iyv 250 (685)
.+.....++.++.||+..+ -+.+++||+.+. .|+ .....+ +. .+......+.++.+|+
T Consensus 66 ----~~~~~~~~~~~~~v~v~~~----------~~~l~~~d~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 127 (238)
T PF13360_consen 66 ----GPISGAPVVDGGRVYVGTS----------DGSLYALDAKTGKVLWSIYLTSSP----PAGVRSSSSPAVDGDRLYV 127 (238)
T ss_dssp ----SCGGSGEEEETTEEEEEET----------TSEEEEEETTTSCEEEEEEE-SSC----TCSTB--SEEEEETTEEEE
T ss_pred ----ccccceeeecccccccccc----------eeeeEecccCCcceeeeecccccc----ccccccccCceEecCEEEE
Confidence 2222224777888888763 237899997765 488 444321 12 2334444455777766
Q ss_pred EecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCCC-------cceeEEEEECCeEEEecceecccCC
Q 005655 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGP-------RAGFSMCVHKKRALLFGGVVDMEMK 321 (685)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~~-------R~g~s~~~~~~~iyvfGG~~~~~~~ 321 (685)
... .+ .++++|+.+. .|...... ++.. ......++.++.+|++.+..
T Consensus 128 ~~~-~g----------------~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----- 183 (238)
T PF13360_consen 128 GTS-SG----------------KLVALDPKTGKLLWKYPVGE--PRGSSPISSFSDINGSPVISDGRVYVSSGDG----- 183 (238)
T ss_dssp EET-CS----------------EEEEEETTTTEEEEEEESST--T-SS--EEEETTEEEEEECCTTEEEEECCTS-----
T ss_pred Eec-cC----------------cEEEEecCCCcEEEEeecCC--CCCCcceeeecccccceEEECCEEEEEcCCC-----
Confidence 653 22 3889998765 57765422 1111 11233444467777776542
Q ss_pred ccccccccCCcEEEEECCCCc--EE
Q 005655 322 GDVIMSLFLNELYGFQLDNHR--WY 344 (685)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~--W~ 344 (685)
.++.+|+.+++ |.
T Consensus 184 ----------~~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 184 ----------RVVAVDLATGEKLWS 198 (238)
T ss_dssp ----------SEEEEETTTTEEEEE
T ss_pred ----------eEEEEECCCCCEEEE
Confidence 26777999986 73
No 60
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.95 E-value=0.043 Score=59.41 Aligned_cols=194 Identities=19% Similarity=0.200 Sum_probs=113.2
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEE-EE-CCE-EEE
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV-SW-KNY-LYI 139 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v-~~-~~~-iyv 139 (685)
...|+-+.--++-++| .-.|+|++|. ++. -.+|..|-.+|. .+.++. ..++--..+ .. +|. ..+
T Consensus 208 a~~ps~~~I~sv~FHp--~~plllvaG~--d~~-----lrifqvDGk~N~--~lqS~~--l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 208 AAHPSHGGITSVQFHP--TAPLLLVAGL--DGT-----LRIFQVDGKVNP--KLQSIH--LEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCcCcCCceEEEecC--CCceEEEecC--CCc-----EEEEEecCccCh--hheeee--eccCccceeeecCCCceEEE
Confidence 3456666666777887 5689999994 332 135555555554 555543 222222222 22 444 777
Q ss_pred EcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceE-EEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRM-VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 140 fGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~-v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
++|. -.-++.||+.+..-+++.+......++-+.. |...+.++++-|.. .-|+++...|
T Consensus 275 ~s~r-----------rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---------G~I~lLhakT 334 (514)
T KOG2055|consen 275 TSGR-----------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAKT 334 (514)
T ss_pred eccc-----------ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---------ceEEeehhhh
Confidence 7774 2458899999999999887433223344433 33355566666653 3466667777
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe-ecCCCCCCCc
Q 005655 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV-KKIGMPPGPR 297 (685)
Q Consensus 219 ~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~-~~~g~~P~~R 297 (685)
..|..---+ +-..+++++...+..||+.||++ . ||++|+..+.-..+ ...| .-
T Consensus 335 ~eli~s~Ki-----eG~v~~~~fsSdsk~l~~~~~~G-e----------------V~v~nl~~~~~~~rf~D~G----~v 388 (514)
T KOG2055|consen 335 KELITSFKI-----EGVVSDFTFSSDSKELLASGGTG-E----------------VYVWNLRQNSCLHRFVDDG----SV 388 (514)
T ss_pred hhhhheeee-----ccEEeeEEEecCCcEEEEEcCCc-e----------------EEEEecCCcceEEEEeecC----cc
Confidence 777543332 44455666666677888888875 3 89999887743332 1111 23
Q ss_pred ceeEEEE-ECCeEEEecce
Q 005655 298 AGFSMCV-HKKRALLFGGV 315 (685)
Q Consensus 298 ~g~s~~~-~~~~iyvfGG~ 315 (685)
.|.+.|. .++..+..|-.
T Consensus 389 ~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSD 407 (514)
T ss_pred ceeeeeecCCCceEEeccC
Confidence 4445553 46665555543
No 61
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.63 E-value=0.98 Score=46.11 Aligned_cols=197 Identities=16% Similarity=0.086 Sum_probs=104.5
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.||+..- ..+.+++|++.+..-..+..+. ..++++. ++.|||... ..+
T Consensus 11 ~g~l~~~D~---------~~~~i~~~~~~~~~~~~~~~~~------~~G~~~~~~~g~l~v~~~-------------~~~ 62 (246)
T PF08450_consen 11 DGRLYWVDI---------PGGRIYRVDPDTGEVEVIDLPG------PNGMAFDRPDGRLYVADS-------------GGI 62 (246)
T ss_dssp TTEEEEEET---------TTTEEEEEETTTTEEEEEESSS------EEEEEEECTTSEEEEEET-------------TCE
T ss_pred CCEEEEEEc---------CCCEEEEEECCCCeEEEEecCC------CceEEEEccCCEEEEEEc-------------Cce
Confidence 467777643 1247999999998877655432 3444444 688888764 235
Q ss_pred EEEECCCCcEEEcccC--CC-CCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCC
Q 005655 159 WMLDLKTNQWEQLNLK--GC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (685)
Q Consensus 159 ~~yD~~t~~W~~~~~~--g~-P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (685)
.++|+.++.++.+... +. +..+.+-.++--++.||+-.-...... ......+|++++. .+...+... .
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~-~~~~g~v~~~~~~-~~~~~~~~~------~- 133 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS-GIDPGSVYRIDPD-GKVTVVADG------L- 133 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT-CGGSEEEEEEETT-SEEEEEEEE------E-
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc-cccccceEEECCC-CeEEEEecC------c-
Confidence 6779999999887763 11 333444444444778777422211110 0001679999998 655554322 1
Q ss_pred ccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC--CceeEEeecCCCCCCC-cceeEEEEE-CCeE
Q 005655 236 RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR--TWEWSKVKKIGMPPGP-RAGFSMCVH-KKRA 309 (685)
Q Consensus 236 Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~--t~~W~~~~~~g~~P~~-R~g~s~~~~-~~~i 309 (685)
..-..++.. +..||+.--.. ..+|+|++. +..+.........+.. ..--++++- .++|
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFN----------------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTT----------------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred ccccceEECCcchheeeccccc----------------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 111233333 45677743322 238888875 3334332211111111 123345554 6888
Q ss_pred EEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
||..-. .+.|++||+....-.
T Consensus 198 ~va~~~--------------~~~I~~~~p~G~~~~ 218 (246)
T PF08450_consen 198 WVADWG--------------GGRIVVFDPDGKLLR 218 (246)
T ss_dssp EEEEET--------------TTEEEEEETTSCEEE
T ss_pred EEEEcC--------------CCEEEEECCCccEEE
Confidence 886321 245889988744333
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.56 E-value=0.095 Score=56.76 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=77.1
Q ss_pred ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCcee---eec
Q 005655 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR---YYN 209 (685)
Q Consensus 133 ~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~---~~~ 209 (685)
.+++|+..+.. ..+.+||+.|..-...+. ++.+.....++.+++.||++........... ..-
T Consensus 75 ~gskIv~~d~~------------~~t~vyDt~t~av~~~P~--l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 75 HGSKIVAVDQS------------GRTLVYDTDTRAVATGPR--LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred cCCeEEEEcCC------------CCeEEEECCCCeEeccCC--CCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence 38888888664 337799999998886665 5555556677778999999988643321100 011
Q ss_pred eEEEEE--------cCCCceEEeccCCCCCCCCC----ccceeEEEeCCEEEE-EecccCCCCcccCCCCCCceeeeEEE
Q 005655 210 DLYVFD--------LDQFKWQEIKPRFGSMWPSP----RSGFQFFVYQDEVFL-YGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 210 dv~~yD--------~~t~~W~~v~~~~~~~~P~~----Rs~~s~~~~~~~Iyv-~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
.+..|+ .....|..++++|....... ..+++++ -+..|+| .-|.. .-+|.
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----------------~GTys 203 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----------------WGTYS 203 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCc----------------eEEEE
Confidence 223333 23457888877632211111 2233333 3667777 33221 12899
Q ss_pred EeCCCceeEEeecC
Q 005655 277 LDPRTWEWSKVKKI 290 (685)
Q Consensus 277 yd~~t~~W~~~~~~ 290 (685)
||+.+.+|+++..-
T Consensus 204 fDt~~~~W~~~GdW 217 (342)
T PF07893_consen 204 FDTESHEWRKHGDW 217 (342)
T ss_pred EEcCCcceeeccce
Confidence 99999999999653
No 63
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.55 E-value=0.16 Score=53.18 Aligned_cols=179 Identities=17% Similarity=0.292 Sum_probs=102.8
Q ss_pred EEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
++||.|..... -....+..||+.+.+|..+... ..+ .-+.+... ++.||+.|-+...+. ....+-.||..
T Consensus 2 ~VGG~F~~aGs---L~C~~lC~yd~~~~qW~~~g~~--i~G-~V~~l~~~~~~~Llv~G~ft~~~~---~~~~la~yd~~ 72 (281)
T PF12768_consen 2 YVGGSFTSAGS---LPCPGLCLYDTDNSQWSSPGNG--ISG-TVTDLQWASNNQLLVGGNFTLNGT---NSSNLATYDFK 72 (281)
T ss_pred EEeeecCCCCC---cCCCEEEEEECCCCEeecCCCC--ceE-EEEEEEEecCCEEEEEEeeEECCC---CceeEEEEecC
Confidence 56777765432 1357899999999999988762 112 12334434 778888887765431 24568899999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC-
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG- 295 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~- 295 (685)
+.+|+.+.......+|.|.....+... ...+++.|..... ..-+..| ...+|..+......+.
T Consensus 73 ~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g-------------~~~l~~~--dGs~W~~i~~~~~~~~t 137 (281)
T PF12768_consen 73 NQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG-------------STFLMKY--DGSSWSSIGSDILGSGT 137 (281)
T ss_pred CCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC-------------CceEEEE--cCCceEeccccccCCCC
Confidence 999999887432345666544444433 4567777765221 1224555 4667888866222221
Q ss_pred CcceeEEEE------------ECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecC
Q 005655 296 PRAGFSMCV------------HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (685)
Q Consensus 296 ~R~g~s~~~------------~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (685)
.-.+..++- .+++++++-|.-.....+ .-..-.|| -..|.++-...
T Consensus 138 ~I~~l~~~~l~~~~~~~~~~~~~~~~Llv~G~l~~~~~G-------~~saalyd--G~~w~Py~~t~ 195 (281)
T PF12768_consen 138 TIRGLQVLPLNSSSHDNSSLFDSDQVLLVTGSLNLPDFG-------NASAALYD--GTSWTPYLLTS 195 (281)
T ss_pred EEEEEEEEeccccccccccccCCCcEEEEEeeEecCCCC-------cEEEEEEC--CCEEEEEEEEe
Confidence 111111211 245666666654321111 22356676 45899987743
No 64
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.95 E-value=0.1 Score=56.66 Aligned_cols=128 Identities=18% Similarity=0.207 Sum_probs=76.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEE-EEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQA-VSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~-v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
-+|.||..+.+-.++..+..-..++-+.. |...+.++++-|.+ ..+.++...|+.|-.--- ++...
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----------G~I~lLhakT~eli~s~K--ieG~v 347 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----------GHIHLLHAKTKELITSFK--IEGVV 347 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----------ceEEeehhhhhhhhheee--eccEE
Confidence 47999999998888877653333443333 23345566666643 347788888888853211 23344
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
+..+....+..||+.||. ..||+||+.++.....-.- --..+|-++|.. ++.++..|--++.
T Consensus 348 ~~~~fsSdsk~l~~~~~~----------GeV~v~nl~~~~~~~rf~D-----~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGT----------GEVYVWNLRQNSCLHRFVD-----DGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred eeEEEecCCcEEEEEcCC----------ceEEEEecCCcceEEEEee-----cCccceeeeeecCCCceEEeccCcce
Confidence 444444446789999884 4799999998754333222 123355555554 5555555544443
No 65
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.68 E-value=5.3 Score=45.99 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=64.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCC-CCC-----cceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS-PPP-----RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~-P~~-----R~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++.||+... .+.|+++|..+. .|+.-..... -.+ ......++.++.||+...
T Consensus 69 ~g~vyv~s~----------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---------- 128 (527)
T TIGR03075 69 DGVMYVTTS----------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---------- 128 (527)
T ss_pred CCEEEEECC----------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----------
Confidence 677887544 236899999876 5875432110 000 112233455777776432
Q ss_pred cccCeEEEEECCCCc--EEEcccCCCC-CCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEecc
Q 005655 153 HHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P-~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (685)
-..++.||..|++ |..-... .. ......+-++.++.||+-..... ......|+.||..+.+ |+.-..
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~~-~~~~~~~tssP~v~~g~Vivg~~~~~----~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNGD-YKAGYTITAAPLVVKGKVITGISGGE----FGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred --CCEEEEEECCCCCEEeeccccc-ccccccccCCcEEECCEEEEeecccc----cCCCcEEEEEECCCCceeEeccCc
Confidence 1468999998875 8753321 11 11122334566887777432111 1123578899988754 764443
No 66
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.61 E-value=0.98 Score=44.68 Aligned_cols=153 Identities=17% Similarity=0.259 Sum_probs=78.0
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCCC-CCCccceEEEEC--CEEEEEccccCCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYK--HKIIVFGGFYDTLR 203 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P-~~Rsgh~~v~~~--~~lyv~GG~~~~~~ 203 (685)
+++...+.+|+|-| +.+|+|+..... -..|... .| .+..-.++..+. +.+|+|-|
T Consensus 11 A~~~~~g~~y~FkG-------------~~~w~~~~~~~~~~p~~I~~~-w~~~p~~IDAa~~~~~~~~~yfFkg------ 70 (194)
T cd00094 11 AVTTLRGELYFFKG-------------RYFWRLSPGKPPGSPFLISSF-WPSLPSPVDAAFERPDTGKIYFFKG------ 70 (194)
T ss_pred eEEEeCCEEEEEeC-------------CEEEEEeCCCCCCCCeEhhhh-CCCCCCCccEEEEECCCCEEEEECC------
Confidence 34445699999987 357888865221 1222221 12 122233344443 79999977
Q ss_pred ceeeeceEEEEEcCCCceEEeccCCCCCCCC--CccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC
Q 005655 204 EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS--PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (685)
Q Consensus 204 ~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~--~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (685)
+.+|+|+..+..+.-......-.+|. .....++... ++++|+|-|.. .|+||..
T Consensus 71 -----~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~------------------y~ry~~~ 127 (194)
T cd00094 71 -----DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDK------------------YWRYDEK 127 (194)
T ss_pred -----CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCE------------------EEEEeCC
Confidence 35788876542221111110001111 1122222222 68999998742 7788765
Q ss_pred CceeEEe-----ec--CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 281 TWEWSKV-----KK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 281 t~~W~~~-----~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
..+...- .. .| .|. ..-.+....++++|+|-|.. +|.||..+.+
T Consensus 128 ~~~v~~~yP~~i~~~w~g-~p~-~idaa~~~~~~~~yfF~g~~----------------y~~~d~~~~~ 178 (194)
T cd00094 128 TQKMDPGYPKLIETDFPG-VPD-KVDAAFRWLDGYYYFFKGDQ----------------YWRFDPRSKE 178 (194)
T ss_pred CccccCCCCcchhhcCCC-cCC-CcceeEEeCCCcEEEEECCE----------------EEEEeCccce
Confidence 5443210 00 11 121 12222223348999998753 8999988766
No 67
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.49 E-value=0.35 Score=52.45 Aligned_cols=127 Identities=16% Similarity=0.187 Sum_probs=74.9
Q ss_pred EEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCC
Q 005655 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (685)
Q Consensus 186 v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (685)
++.+++|+..++. ..+.+||+.+..-...+.+ +.+.....++.+++.||++...... ......
T Consensus 73 al~gskIv~~d~~----------~~t~vyDt~t~av~~~P~l-----~~pk~~pisv~VG~~LY~m~~~~~~--~~~~~~ 135 (342)
T PF07893_consen 73 ALHGSKIVAVDQS----------GRTLVYDTDTRAVATGPRL-----HSPKRCPISVSVGDKLYAMDRSPFP--EPAGRP 135 (342)
T ss_pred EecCCeEEEEcCC----------CCeEEEECCCCeEeccCCC-----CCCCcceEEEEeCCeEEEeeccCcc--ccccCc
Confidence 3358899988663 3378999999876644443 4555555666778889999887543 000000
Q ss_pred CCCceeeeEEEEe--------CCCceeEEeecCCCCCCCcc-------eeEEEEE-CCeEEE-ecceecccCCccccccc
Q 005655 266 EKGIIHSDLWSLD--------PRTWEWSKVKKIGMPPGPRA-------GFSMCVH-KKRALL-FGGVVDMEMKGDVIMSL 328 (685)
Q Consensus 266 ~~~~~~~dv~~yd--------~~t~~W~~~~~~g~~P~~R~-------g~s~~~~-~~~iyv-fGG~~~~~~~~~~~~~~ 328 (685)
. ...-.+..|+ ...+.|..++++ |..+. -.+-+++ +..|+| .-|..
T Consensus 136 ~--~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------ 198 (342)
T PF07893_consen 136 D--FPCFEALVYRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------ 198 (342)
T ss_pred c--ceeEEEeccccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc------------
Confidence 0 0011233333 345677776553 33222 3344555 556776 44321
Q ss_pred cCCcEEEEECCCCcEEEEEe
Q 005655 329 FLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 329 ~~ndl~~yd~~t~~W~~l~~ 348 (685)
.-.|+||+.+..|..+..
T Consensus 199 --~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 199 --WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred --eEEEEEEcCCcceeeccc
Confidence 128999999999998754
No 68
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.46 E-value=1.1 Score=44.23 Aligned_cols=149 Identities=21% Similarity=0.339 Sum_probs=76.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYK 156 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~ 156 (685)
.+++|+|-|. .+|+|+..... -+.+...-+..|..-.++.... +.+|+|-| +
T Consensus 16 ~g~~y~FkG~-----------~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg-------------~ 71 (194)
T cd00094 16 RGELYFFKGR-----------YFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG-------------D 71 (194)
T ss_pred CCEEEEEeCC-----------EEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC-------------C
Confidence 4889999873 46777654211 1122221111222233444443 89999977 4
Q ss_pred eEEEEECCCCcEE---EcccCCCCC-CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC-
Q 005655 157 DFWMLDLKTNQWE---QLNLKGCPS-PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG- 229 (685)
Q Consensus 157 dv~~yD~~t~~W~---~~~~~g~P~-~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~- 229 (685)
.+|+|+..+..+. .+...+.|. +..-.++..+ ++++|+|.| +..|+||..+++...--+.+.
T Consensus 72 ~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-----------~~y~ry~~~~~~v~~~yP~~i~ 140 (194)
T cd00094 72 KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-----------DKYWRYDEKTQKMDPGYPKLIE 140 (194)
T ss_pred EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-----------CEEEEEeCCCccccCCCCcchh
Confidence 6889987652221 111112222 1212233444 579999988 457888876554321101000
Q ss_pred ---CCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 230 ---SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 230 ---~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
..+|.. ...++...++.+|+|-|. .+|+||..+.+
T Consensus 141 ~~w~g~p~~-idaa~~~~~~~~yfF~g~------------------~y~~~d~~~~~ 178 (194)
T cd00094 141 TDFPGVPDK-VDAAFRWLDGYYYFFKGD------------------QYWRFDPRSKE 178 (194)
T ss_pred hcCCCcCCC-cceeEEeCCCcEEEEECC------------------EEEEEeCccce
Confidence 011222 222222224889999774 38899987665
No 69
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.39 E-value=3.5 Score=46.06 Aligned_cols=194 Identities=13% Similarity=0.000 Sum_probs=96.1
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
..+|++|+.++..+.++... ..-...+...-+..|++...... ..++|++|+.++....+.. .+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~Lt~--~~~~- 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP--GMTFAPRFSPDGRKVVMSLSQGG---------NTDIYTMDLRSGTTTRLTD--SPAI- 291 (435)
T ss_pred CEEEEEECCCCcEEEeecCC--CcccCcEECCCCCEEEEEEecCC---------CceEEEEECCCCceEEccC--CCCc-
Confidence 47999999999888776432 11111111111334544432211 2579999999988877754 2211
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCc
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~ 260 (685)
..+....-++.-++|..... + ...+|++|+.+.....+... ............+..|++.. ....
T Consensus 292 ~~~~~~spDG~~i~f~s~~~-g-----~~~Iy~~d~~g~~~~~lt~~-----~~~~~~~~~SpdG~~ia~~~-~~~~--- 356 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRS-G-----SPQLYVMNADGSNPRRISFG-----GGRYSTPVWSPRGDLIAFTK-QGGG--- 356 (435)
T ss_pred cCceeEcCCCCEEEEEECCC-C-----CCeEEEEECCCCCeEEeecC-----CCcccCeEECCCCCEEEEEE-cCCC---
Confidence 11111122444333433111 1 24789999988877777643 11111122222244554443 2111
Q ss_pred ccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
...++.+|+.+.....+... ... .+..+. +++.++|-...... .....||.+|+.
T Consensus 357 ----------~~~i~~~d~~~~~~~~lt~~-----~~~-~~p~~spDG~~i~~~~~~~~~--------~~~~~L~~~dl~ 412 (435)
T PRK05137 357 ----------QFSIGVMKPDGSGERILTSG-----FLV-EGPTWAPNGRVIMFFRQTPGS--------GGAPKLYTVDLT 412 (435)
T ss_pred ----------ceEEEEEECCCCceEeccCC-----CCC-CCCeECCCCCEEEEEEccCCC--------CCcceEEEEECC
Confidence 13588888876655544321 111 112222 56655554432110 001469999998
Q ss_pred CCcEEEEE
Q 005655 340 NHRWYPLE 347 (685)
Q Consensus 340 t~~W~~l~ 347 (685)
...-..+.
T Consensus 413 g~~~~~l~ 420 (435)
T PRK05137 413 GRNEREVP 420 (435)
T ss_pred CCceEEcc
Confidence 76555544
No 70
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.31 E-value=0.42 Score=50.17 Aligned_cols=125 Identities=18% Similarity=0.262 Sum_probs=74.7
Q ss_pred EEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEEC
Q 005655 85 ILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDL 163 (685)
Q Consensus 85 ~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~ 163 (685)
+++||.+.. ........|+.||+.+.+|..+... ..-.-+++..+ ++.|||.|-...... ....+-.||.
T Consensus 1 v~VGG~F~~-aGsL~C~~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~-----~~~~la~yd~ 71 (281)
T PF12768_consen 1 VYVGGSFTS-AGSLPCPGLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGT-----NSSNLATYDF 71 (281)
T ss_pred CEEeeecCC-CCCcCCCEEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCC-----CceeEEEEec
Confidence 367886432 2233467899999999999987653 12222344444 567777664433321 1356889999
Q ss_pred CCCcEEEcccC---CCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 164 KTNQWEQLNLK---GCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 164 ~t~~W~~~~~~---g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
.+++|+.+... ..|.+..-...... ...+|+.|.. ..+ ..-+..| .-.+|+.+..
T Consensus 72 ~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g-----~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 72 KNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG-----STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CCCeeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC-----CceEEEE--cCCceEeccc
Confidence 99999988762 23444322222222 3468887776 221 2345556 5668999877
No 71
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.31 E-value=3.3 Score=46.58 Aligned_cols=145 Identities=9% Similarity=0.010 Sum_probs=79.9
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|++|+.+++-+.++... . ...+.+.. +..|++...... ..++|++|+.++..+.+... ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~--g--~~~~~~wSPDG~~La~~~~~~g---------~~~Iy~~dl~tg~~~~lt~~--~~ 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP--G--INGAPRFSPDGKKLALVLSKDG---------QPEIYVVDIATKALTRITRH--RA 306 (448)
T ss_pred cEEEEEECCCCCeEEecCCC--C--CcCCeeECCCCCEEEEEEeCCC---------CeEEEEEECCCCCeEECccC--CC
Confidence 46999999988877775431 1 11122222 345655432211 25799999999998887652 11
Q ss_pred CCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEeccc
Q 005655 179 PRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYS 255 (685)
Q Consensus 179 ~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~ 255 (685)
......| ++ +|++.....+ ...+|++|+.+.++..+.... ... ...+....+..||+.+ ..
T Consensus 307 ---~~~~p~wSpDG~~I~f~s~~~g-------~~~Iy~~dl~~g~~~~Lt~~g----~~~-~~~~~SpDG~~l~~~~-~~ 370 (448)
T PRK04792 307 ---IDTEPSWHPDGKSLIFTSERGG-------KPQIYRVNLASGKVSRLTFEG----EQN-LGGSITPDGRSMIMVN-RT 370 (448)
T ss_pred ---CccceEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEEecCC----CCC-cCeeECCCCCEEEEEE-ec
Confidence 1111222 34 4444332111 257999999999998886431 111 1122222344555543 22
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
.. ...+|.+|+.+.....+..
T Consensus 371 ~g-------------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 371 NG-------------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred CC-------------ceEEEEEECCCCCeEEccC
Confidence 11 1358999998888776653
No 72
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.22 E-value=2 Score=48.43 Aligned_cols=145 Identities=10% Similarity=0.112 Sum_probs=79.9
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|++|+.++.-..+.. .+..-. ...| +..|++.....+ ..+||++|+.+.....+....
T Consensus 242 ~~L~~~dl~tg~~~~lt~--~~g~~~---~~~wSPDG~~La~~~~~~g-------~~~Iy~~dl~tg~~~~lt~~~---- 305 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS--FPGING---APRFSPDGKKLALVLSKDG-------QPEIYVVDIATKALTRITRHR---- 305 (448)
T ss_pred cEEEEEECCCCCeEEecC--CCCCcC---CeeECCCCCEEEEEEeCCC-------CeEEEEEECCCCCeEECccCC----
Confidence 579999999888776654 221111 1223 345655433221 257999999999888776531
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
..-...+....+..|++.....+ ...+|.+|+.+..+.++...+.. ..+.++. +++.++
T Consensus 306 -~~~~~p~wSpDG~~I~f~s~~~g--------------~~~Iy~~dl~~g~~~~Lt~~g~~-----~~~~~~SpDG~~l~ 365 (448)
T PRK04792 306 -AIDTEPSWHPDGKSLIFTSERGG--------------KPQIYRVNLASGKVSRLTFEGEQ-----NLGGSITPDGRSMI 365 (448)
T ss_pred -CCccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEEecCCCC-----CcCeeECCCCCEEE
Confidence 11112222222445555432221 13699999999888887532211 1112222 455454
Q ss_pred ecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
|.+... -...||.+|+.+.....+.
T Consensus 366 ~~~~~~-----------g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 366 MVNRTN-----------GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred EEEecC-----------CceEEEEEECCCCCeEEcc
Confidence 543321 0246999999988776554
No 73
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.21 E-value=2.5 Score=47.25 Aligned_cols=185 Identities=10% Similarity=-0.002 Sum_probs=94.6
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
..+|++|+.+++-..++... .. .......-+ ..|++...... ..++|++|+.++....+... +..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~--g~-~~~~~~SpDG~~l~~~~s~~g---------~~~Iy~~d~~~g~~~~lt~~--~~~ 293 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR--GI-NGAPSFSPDGRRLALTLSRDG---------NPEIYVMDLGSRQLTRLTNH--FGI 293 (433)
T ss_pred cEEEEEECCCCCEEEeccCC--CC-ccCceECCCCCEEEEEEeCCC---------CceEEEEECCCCCeEECccC--CCC
Confidence 46899999988887776432 11 111111113 44544332211 14799999999887776541 111
Q ss_pred CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCC
Q 005655 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (685)
Q Consensus 180 Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~ 259 (685)
-... ...-++..++|..... + ...+|.+|+.+..+..+... .......+....+..|++..+....
T Consensus 294 ~~~~-~~spDG~~l~f~sd~~-g-----~~~iy~~dl~~g~~~~lt~~-----g~~~~~~~~SpDG~~Ia~~~~~~~~-- 359 (433)
T PRK04922 294 DTEP-TWAPDGKSIYFTSDRG-G-----RPQIYRVAASGGSAERLTFQ-----GNYNARASVSPDGKKIAMVHGSGGQ-- 359 (433)
T ss_pred ccce-EECCCCCEEEEEECCC-C-----CceEEEEECCCCCeEEeecC-----CCCccCEEECCCCCEEEEEECCCCc--
Confidence 1111 1112444333332111 1 24799999988888887643 1111122222335556655442211
Q ss_pred cccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
..++++|+.+..+..+...+ ........-+++.++|..... -...||.+++.
T Consensus 360 ------------~~I~v~d~~~g~~~~Lt~~~-----~~~~p~~spdG~~i~~~s~~~-----------g~~~L~~~~~~ 411 (433)
T PRK04922 360 ------------YRIAVMDLSTGSVRTLTPGS-----LDESPSFAPNGSMVLYATREG-----------GRGVLAAVSTD 411 (433)
T ss_pred ------------eeEEEEECCCCCeEECCCCC-----CCCCceECCCCCEEEEEEecC-----------CceEEEEEECC
Confidence 25889999888877665321 111111222666666654421 12458888886
Q ss_pred CC
Q 005655 340 NH 341 (685)
Q Consensus 340 t~ 341 (685)
..
T Consensus 412 g~ 413 (433)
T PRK04922 412 GR 413 (433)
T ss_pred CC
Confidence 43
No 74
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.15 E-value=3.5 Score=42.31 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=53.9
Q ss_pred EEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEE
Q 005655 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 83 ~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
.+|+.++. -+.+++||+.+++-...-... ..++ +++.. +..+|+.++. .+.+++
T Consensus 2 ~~~~s~~~---------d~~v~~~d~~t~~~~~~~~~~-~~~~---~l~~~~dg~~l~~~~~~-----------~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEK---------DNTISVIDTATLEVTRTFPVG-QRPR---GITLSKDGKLLYVCASD-----------SDTIQV 57 (300)
T ss_pred cEEEEecC---------CCEEEEEECCCCceEEEEECC-CCCC---ceEECCCCCEEEEEECC-----------CCeEEE
Confidence 46666662 137888998877643322211 1122 23332 3457777653 246889
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||+.+......-.. .+.+ +.+++. ++.+|+.++. ...+.+||+.+..
T Consensus 58 ~d~~~~~~~~~~~~-~~~~---~~~~~~~~g~~l~~~~~~---------~~~l~~~d~~~~~ 106 (300)
T TIGR03866 58 IDLATGEVIGTLPS-GPDP---ELFALHPNGKILYIANED---------DNLVTVIDIETRK 106 (300)
T ss_pred EECCCCcEEEeccC-CCCc---cEEEECCCCCEEEEEcCC---------CCeEEEEECCCCe
Confidence 99988876542221 1111 222222 3456665542 2468889988754
No 75
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.13 E-value=3.6 Score=45.32 Aligned_cols=146 Identities=11% Similarity=0.007 Sum_probs=78.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|+||+.++....+.... ... .+.+.. + ..|++...... ..++|.+|+.++....+... +.
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~--~~~--~~~~~spDg~~l~~~~~~~~---------~~~i~~~d~~~~~~~~l~~~--~~ 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP--GMN--GAPAFSPDGSKLAVSLSKDG---------NPDIYVMDLDGKQLTRLTNG--PG 278 (417)
T ss_pred cEEEEEECCCCCEEEeecCC--CCc--cceEECCCCCEEEEEECCCC---------CccEEEEECCCCCEEECCCC--CC
Confidence 46899999988776665421 111 122222 3 45655433211 25799999999888777542 11
Q ss_pred CCccceEEEECC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccC
Q 005655 179 PRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (685)
Q Consensus 179 ~Rsgh~~v~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~ 256 (685)
.... ....-++ +|++.....+ ...||.+|+.+..+..+.... ......... ++..+++.....
T Consensus 279 ~~~~-~~~s~dg~~l~~~s~~~g-------~~~iy~~d~~~~~~~~l~~~~-------~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 279 IDTE-PSWSPDGKSIAFTSDRGG-------SPQIYMMDADGGEVRRLTFRG-------GYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred CCCC-EEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecCC-------CCccCeEECCCCCEEEEEEccC
Confidence 1111 1111244 4444332211 247999999988887776431 111222222 455555554332
Q ss_pred CCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
. ...++.+|+.+..+..+..
T Consensus 344 ~-------------~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 344 G-------------GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred C-------------ceEEEEEeCCCCCeEEccC
Confidence 1 2358899998876666543
No 76
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.02 E-value=4.4 Score=45.12 Aligned_cols=182 Identities=5% Similarity=-0.009 Sum_probs=93.7
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|++|+.+++-+.++... ....+.... + ..|++...... ..++|++|+.++.+..+... +.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~----g~~~~~~~SpDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~~ 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE----GLNGAPAWSPDGSKLAFVLSKDG---------NPEIYVMDLASRQLSRVTNH--PA 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCC----CCcCCeEECCCCCEEEEEEccCC---------CceEEEEECCCCCeEEcccC--CC
Confidence 46999999998887775432 111122222 3 34543321111 25799999999998887541 11
Q ss_pred CCccceEEEECC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC
Q 005655 179 PRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 179 ~Rsgh~~v~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
........-++ .||+.....+ ...+|.+|+.+..+..+.... ...........+..|++.....+
T Consensus 288 -~~~~~~~spDg~~i~f~s~~~g-------~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~- 353 (430)
T PRK00178 288 -IDTEPFWGKDGRTLYFTSDRGG-------KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG- 353 (430)
T ss_pred -CcCCeEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC-
Confidence 11111111234 4544322111 247999999998888876431 00111112222455555432211
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEE
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (685)
...++.+|+.+..++.+...+. ...-...-+++.++|...... ...|+.++
T Consensus 354 -------------~~~l~~~dl~tg~~~~lt~~~~-----~~~p~~spdg~~i~~~~~~~g-----------~~~l~~~~ 404 (430)
T PRK00178 354 -------------NFHVAAQDLQRGSVRILTDTSL-----DESPSVAPNGTMLIYATRQQG-----------RGVLMLVS 404 (430)
T ss_pred -------------ceEEEEEECCCCCEEEccCCCC-----CCCceECCCCCEEEEEEecCC-----------ceEEEEEE
Confidence 1248999999888877754211 111112226676666544221 23477777
Q ss_pred CCC
Q 005655 338 LDN 340 (685)
Q Consensus 338 ~~t 340 (685)
+..
T Consensus 405 ~~g 407 (430)
T PRK00178 405 ING 407 (430)
T ss_pred CCC
Confidence 653
No 77
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.86 E-value=4.5 Score=40.08 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=53.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.++++|+. + +.+++|+..+..-....... . ..-..+... ++..+++|+..
T Consensus 14 ~~~~~~--~~~~l~~~~~--~-------g~i~i~~~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~l~~~~~~------- 72 (289)
T cd00200 14 CVAFSP--DGKLLATGSG--D-------GTIKVWDLETGELLRTLKGH--T-GPVRDVAASADGTYLASGSSD------- 72 (289)
T ss_pred EEEEcC--CCCEEEEeec--C-------cEEEEEEeeCCCcEEEEecC--C-cceeEEEECCCCCEEEEEcCC-------
Confidence 344454 4567777773 2 36778888766422111110 1 111122233 34466666642
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
..+.+||+.+......-. .. ...-.++... ++.+++.|+. ...+.+||+.+..
T Consensus 73 ----~~i~i~~~~~~~~~~~~~--~~-~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~ 126 (289)
T cd00200 73 ----KTIRLWDLETGECVRTLT--GH-TSYVSSVAFSPDGRILSSSSR---------DKTIKVWDVETGK 126 (289)
T ss_pred ----CeEEEEEcCcccceEEEe--cc-CCcEEEEEEcCCCCEEEEecC---------CCeEEEEECCCcE
Confidence 457888887753221111 01 1111222222 3356665552 2468888887544
No 78
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.86 E-value=9.1 Score=43.57 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=65.1
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCC--CCCCc-ceeEEEEEC-CEEEEEcCccCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN--SPPPR-SAHQAVSWK-NYLYIFGGEFTS 146 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~--~P~~R-~~ha~v~~~-~~iyvfGG~~~s 146 (685)
+.++. ++.||+.... ..|+++|+.+. .|+.-.... ...+. ....+++.+ +.||+...
T Consensus 56 sPvv~---~g~vy~~~~~----------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---- 118 (488)
T cd00216 56 TPLVV---DGDMYFTTSH----------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---- 118 (488)
T ss_pred CCEEE---CCEEEEeCCC----------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC----
Confidence 33455 6888876541 46899999876 488532211 00010 111233445 77776432
Q ss_pred CCCccccccCeEEEEECCCCc--EEEcccCCC-CCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC--ce
Q 005655 147 PNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KW 221 (685)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~-P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W 221 (685)
-..++.||..|++ |+.-..... +......+.++.++.+|+ |..............+++||..+. .|
T Consensus 119 --------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 119 --------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred --------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceee
Confidence 1468899988764 876433110 001122334555666665 322111000012457899999875 48
Q ss_pred EEec
Q 005655 222 QEIK 225 (685)
Q Consensus 222 ~~v~ 225 (685)
..-.
T Consensus 190 ~~~~ 193 (488)
T cd00216 190 RFYT 193 (488)
T ss_pred Eeec
Confidence 7543
No 79
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.68 E-value=2.5 Score=46.53 Aligned_cols=146 Identities=15% Similarity=0.079 Sum_probs=79.5
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (685)
..++++|+.++....+.. .+..... .+.. ++ .|++.....+ ..++|.+|+.+.....+....
T Consensus 214 ~~i~v~d~~~g~~~~~~~--~~~~~~~--~~~spDg~~l~~~~~~~~-------~~~i~~~d~~~~~~~~l~~~~----- 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS--FPGMNGA--PAFSPDGSKLAVSLSKDG-------NPDIYVMDLDGKQLTRLTNGP----- 277 (417)
T ss_pred cEEEEEECCCCCEEEeec--CCCCccc--eEECCCCCEEEEEECCCC-------CccEEEEECCCCCEEECCCCC-----
Confidence 579999999887766554 2222221 2222 33 5555433211 357999999988877775431
Q ss_pred CCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEe
Q 005655 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (685)
Q Consensus 234 ~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvf 312 (685)
...........+..|++.....+ ...+|.+++.+..+.++...+ ......++. +++.+++
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~~~g--------------~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSDRGG--------------SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAF 338 (417)
T ss_pred CCCCCEEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEE
Confidence 11111122222444554433221 136899999888887775432 112222332 5666666
Q ss_pred cceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
..... -...|+.||+.+..+..+.
T Consensus 339 ~~~~~-----------~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 339 VHREG-----------GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EEccC-----------CceEEEEEeCCCCCeEEcc
Confidence 54422 1346999999887665544
No 80
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.62 E-value=5.2 Score=39.64 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=35.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEEC-CEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~~~s~~~~ 150 (685)
.+...| ++..+++|+. -+.+++|++.+.... .+.. ....-.++.... +.+++.|+..
T Consensus 56 ~~~~~~--~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~------ 114 (289)
T cd00200 56 DVAASA--DGTYLASGSS---------DKTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSRD------ 114 (289)
T ss_pred EEEECC--CCCEEEEEcC---------CCeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCCEEEEecCC------
Confidence 344444 4456666663 246888888875322 2211 111122333333 4566666521
Q ss_pred cccccCeEEEEECCCCc
Q 005655 151 RFHHYKDFWMLDLKTNQ 167 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~ 167 (685)
..+.+||+.+..
T Consensus 115 -----~~i~~~~~~~~~ 126 (289)
T cd00200 115 -----KTIKVWDVETGK 126 (289)
T ss_pred -----CeEEEEECCCcE
Confidence 458888887554
No 81
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.37 E-value=9.7 Score=42.56 Aligned_cols=167 Identities=9% Similarity=-0.007 Sum_probs=87.6
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|++++.+++-+.++... ....+.+.. + ..|++...... ..++|++|+.++...++... +
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~g---------~~~I~~~d~~tg~~~~lt~~--~- 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG---------SLNLYVMDLASGQIRQVTDG--R- 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCC----CCcCCeEECCCCCEEEEEEcCCC---------CcEEEEEECCCCCEEEccCC--C-
Confidence 46889999888777665431 111122222 3 34554432211 24699999999988877542 1
Q ss_pred CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccC
Q 005655 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256 (685)
Q Consensus 179 ~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~ 256 (685)
.......| ++..++|..... + ...+|.+|+.+..-.++... ............+..|++.+....
T Consensus 287 --~~~~~~~wSPDG~~I~f~s~~~-g-----~~~Iy~~d~~~g~~~~lt~~-----~~~~~~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 287 --SNNTEPTWFPDSQNLAYTSDQA-G-----RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred --CCcCceEECCCCCEEEEEeCCC-C-----CceEEEEECCCCCeEEeecC-----CCCccCEEECCCCCEEEEEEccCC
Confidence 22233334 444444433211 1 24789999988777766543 111112222222444544443221
Q ss_pred CCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecce
Q 005655 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (685)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (685)
...++.+|+.+..+..+.... ........-+++.++|.+.
T Consensus 354 --------------~~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 354 --------------QQHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred --------------CceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEc
Confidence 135889999988888776421 1111112236777777665
No 82
>PRK13684 Ycf48-like protein; Provisional
Probab=94.35 E-value=8.9 Score=41.37 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=78.2
Q ss_pred CcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEEC
Q 005655 111 QEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189 (685)
Q Consensus 111 ~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~ 189 (685)
.+|+.+..+. ..+...+.+.++ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-+-+.+....
T Consensus 119 ~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~g~~------------G~i~~S~DgG~tW~~~~~---~~~g~~~~i~~~~ 182 (334)
T PRK13684 119 KNWTRIPLSE-KLPGSPYLITALGPGTAEMATNV------------GAIYRTTDGGKNWEALVE---DAAGVVRNLRRSP 182 (334)
T ss_pred CCCeEccCCc-CCCCCceEEEEECCCcceeeecc------------ceEEEECCCCCCceeCcC---CCcceEEEEEECC
Confidence 4899886431 122233334444 3556666542 234444445578998865 2233445555554
Q ss_pred CEEEEEccccCCCCceeeeceEEE-EEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCC
Q 005655 190 HKIIVFGGFYDTLREVRYYNDLYV-FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (685)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~-yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (685)
+..|+..|..+ .++. .+....+|+.+.. +..+.-++++.. ++.+|++|... .
T Consensus 183 ~g~~v~~g~~G---------~i~~s~~~gg~tW~~~~~------~~~~~l~~i~~~~~g~~~~vg~~G-~---------- 236 (334)
T PRK13684 183 DGKYVAVSSRG---------NFYSTWEPGQTAWTPHQR------NSSRRLQSMGFQPDGNLWMLARGG-Q---------- 236 (334)
T ss_pred CCeEEEEeCCc---------eEEEEcCCCCCeEEEeeC------CCcccceeeeEcCCCCEEEEecCC-E----------
Confidence 44444444322 1222 2334457998854 334455555554 67788887542 1
Q ss_pred CceeeeEEEE--eCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecce
Q 005655 268 GIIHSDLWSL--DPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (685)
Q Consensus 268 ~~~~~dv~~y--d~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~ 315 (685)
.++ +-...+|+.+..... .....-+++++. .+.+|++|..
T Consensus 237 -------~~~~s~d~G~sW~~~~~~~~-~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 237 -------IRFNDPDDLESWSKPIIPEI-TNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred -------EEEccCCCCCccccccCCcc-ccccceeeEEEcCCCCEEEEcCC
Confidence 123 223458997643100 011222344444 5678888753
No 83
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.15 E-value=4.9 Score=44.93 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=75.1
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEECC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
..+|++|+.++....+.. .+..-... ...-++ .|++.....+ ..++|++|+.+....++... +.
T Consensus 226 ~~i~~~dl~~g~~~~l~~--~~g~~~~~-~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~Lt~~-----~~ 290 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN--FPGMTFAP-RFSPDGRKVVMSLSQGG-------NTDIYTMDLRSGTTTRLTDS-----PA 290 (435)
T ss_pred CEEEEEECCCCcEEEeec--CCCcccCc-EECCCCCEEEEEEecCC-------CceEEEEECCCCceEEccCC-----CC
Confidence 579999999998887764 22211111 111244 4444332211 35799999998887776544 21
Q ss_pred CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE-ECCeEEEec
Q 005655 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFG 313 (685)
Q Consensus 235 ~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~-~~~~iyvfG 313 (685)
.-...+....+..|++.....+ ...+|++|+.+....++... ..+.. .... -+++.++|.
T Consensus 291 ~~~~~~~spDG~~i~f~s~~~g--------------~~~Iy~~d~~g~~~~~lt~~----~~~~~-~~~~SpdG~~ia~~ 351 (435)
T PRK05137 291 IDTSPSYSPDGSQIVFESDRSG--------------SPQLYVMNADGSNPRRISFG----GGRYS-TPVWSPRGDLIAFT 351 (435)
T ss_pred ccCceeEcCCCCEEEEEECCCC--------------CCeEEEEECCCCCeEEeecC----CCccc-CeEECCCCCEEEEE
Confidence 1112222222444544322111 13589999888777776532 11111 1222 244444443
Q ss_pred ceecccCCccccccccCCcEEEEECCCCcEEEE
Q 005655 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (685)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (685)
.... . ...++.+|+.+.....+
T Consensus 352 ~~~~---------~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 352 KQGG---------G--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred EcCC---------C--ceEEEEEECCCCceEec
Confidence 3211 0 24689999877655443
No 84
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.14 E-value=5.3 Score=44.45 Aligned_cols=146 Identities=11% Similarity=0.092 Sum_probs=79.1
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|++|+.++.-..+.. .+. .. ....| ++ +|++.....+ ..++|++|+.+.....+...
T Consensus 223 ~~l~~~~l~~g~~~~l~~--~~g--~~-~~~~~SpDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~----- 285 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN--FEG--LN-GAPAWSPDGSKLAFVLSKDG-------NPEIYVMDLASRQLSRVTNH----- 285 (430)
T ss_pred CEEEEEECCCCCEEEccC--CCC--Cc-CCeEECCCCCEEEEEEccCC-------CceEEEEECCCCCeEEcccC-----
Confidence 479999999998877754 121 11 12233 33 4544322111 25799999999988877643
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
+..-........+..||+.....+ ...+|.+++.+..+.++...+ .......+. +++.++
T Consensus 286 ~~~~~~~~~spDg~~i~f~s~~~g--------------~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 286 PAIDTEPFWGKDGRTLYFTSDRGG--------------KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLV 346 (430)
T ss_pred CCCcCCeEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEE
Confidence 111122222223455655432211 135899999888888775422 111122222 444444
Q ss_pred ecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
|....+ + ...|+.+|+.+..+..+..
T Consensus 347 ~~~~~~---------~--~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 347 MVHRQD---------G--NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEEccC---------C--ceEEEEEECCCCCEEEccC
Confidence 433221 0 2359999999988776653
No 85
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.13 E-value=7.8 Score=39.70 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=55.2
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEE-ecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~-l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
++.+.|. +..+|+.++. .+.+++||+.+.+... ++.. +.+ +.++.. ++.+|+.++.
T Consensus 35 ~l~~~~d-g~~l~~~~~~---------~~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~------ 93 (300)
T TIGR03866 35 GITLSKD-GKLLYVCASD---------SDTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANED------ 93 (300)
T ss_pred ceEECCC-CCEEEEEECC---------CCeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCC------
Confidence 3555552 3456676652 2468899998877653 3221 112 223332 3456666542
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
-+.+.+||+.+..-... .+....-+++++. ++.+++++... .+.++.||+.+..
T Consensus 94 -----~~~l~~~d~~~~~~~~~----~~~~~~~~~~~~~~dg~~l~~~~~~--------~~~~~~~d~~~~~ 148 (300)
T TIGR03866 94 -----DNLVTVIDIETRKVLAE----IPVGVEPEGMAVSPDGKIVVNTSET--------TNMAHFIDTKTYE 148 (300)
T ss_pred -----CCeEEEEECCCCeEEeE----eeCCCCcceEEECCCCCEEEEEecC--------CCeEEEEeCCCCe
Confidence 14588899987542211 1111111233332 56666665432 1245667876654
No 86
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.06 E-value=4.7 Score=45.06 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=76.8
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|++|+.++....+.. .+.. .. ...+ ++ +|++.....+ ..++|++|+.+....++...
T Consensus 228 ~~l~~~dl~~g~~~~l~~--~~g~-~~--~~~~SpDG~~l~~~~s~~g-------~~~Iy~~d~~~g~~~~lt~~----- 290 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS--FRGI-NG--APSFSPDGRRLALTLSRDG-------NPEIYVMDLGSRQLTRLTNH----- 290 (433)
T ss_pred cEEEEEECCCCCEEEecc--CCCC-cc--CceECCCCCEEEEEEeCCC-------CceEEEEECCCCCeEECccC-----
Confidence 569999999988877754 2211 11 2223 34 4544332211 25799999998877666543
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCe-EE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR-AL 310 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~-iy 310 (685)
+..-...+....+..|++.....+ ...+|.++..+..+.++...+ ....+.++. +++ |+
T Consensus 291 ~~~~~~~~~spDG~~l~f~sd~~g--------------~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 291 FGIDTEPTWAPDGKSIYFTSDRGG--------------RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIA 351 (433)
T ss_pred CCCccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEE
Confidence 111112222222344444432211 136899999888888775432 111222332 444 44
Q ss_pred EecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
+..+..+ -..|++||+.+..+..+.
T Consensus 352 ~~~~~~~------------~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 352 MVHGSGG------------QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred EEECCCC------------ceeEEEEECCCCCeEECC
Confidence 4333211 136999999888776554
No 87
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.96 E-value=10 Score=40.40 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=54.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC-CCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~ 148 (685)
+.+++.|. +..||+.+.. .+.+..|++. ++.+..+.... .+..-+.++.. +..||+.+-.
T Consensus 38 ~~l~~spd-~~~lyv~~~~---------~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~----- 100 (330)
T PRK11028 38 QPMVISPD-KRHLYVGVRP---------EFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYN----- 100 (330)
T ss_pred ccEEECCC-CCEEEEEECC---------CCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcC-----
Confidence 44566663 3556664431 1457777776 45666444321 11112233333 3456665421
Q ss_pred CccccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 149 QERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
-+.+.+|++.++. ...+.. .+....-|.+++. +++||+..- ..+.|++||+.+.
T Consensus 101 ------~~~v~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~p~g~~l~v~~~---------~~~~v~v~d~~~~ 158 (330)
T PRK11028 101 ------ANCVSVSPLDKDGIPVAPIQI--IEGLEGCHSANIDPDNRTLWVPCL---------KEDRIRLFTLSDD 158 (330)
T ss_pred ------CCeEEEEEECCCCCCCCceee--ccCCCcccEeEeCCCCCEEEEeeC---------CCCEEEEEEECCC
Confidence 1456677775321 122211 1222223554444 346666432 1467899998763
No 88
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.64 E-value=8.7 Score=42.94 Aligned_cols=147 Identities=10% Similarity=0.057 Sum_probs=77.2
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|++|+.++.-..+.. .+.. .+ ...+ ++ +|++.....+ ..++|++|+.+....++...
T Consensus 223 ~~i~i~dl~~G~~~~l~~--~~~~-~~--~~~~SPDG~~La~~~~~~g-------~~~I~~~d~~tg~~~~lt~~----- 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS--FPRH-NG--APAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG----- 285 (429)
T ss_pred cEEEEEECCCCCeEEccC--CCCC-cC--CeEECCCCCEEEEEEcCCC-------CcEEEEEECCCCCEEEccCC-----
Confidence 468999998887766654 2211 11 1223 34 4554432211 24699999999887777543
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEe
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLF 312 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvf 312 (685)
+..-........+..|++.....+ ...+|.+|+.+....++...+ .........-+++.++|
T Consensus 286 ~~~~~~~~wSPDG~~I~f~s~~~g--------------~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~ 347 (429)
T PRK03629 286 RSNNTEPTWFPDSQNLAYTSDQAG--------------RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVM 347 (429)
T ss_pred CCCcCceEECCCCCEEEEEeCCCC--------------CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEE
Confidence 211122222222344444332211 136889998887766664321 11111111224555555
Q ss_pred cceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.+.... ...|+.+|+.++.+..+..
T Consensus 348 ~~~~~g-----------~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 348 VSSNGG-----------QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred EEccCC-----------CceEEEEECCCCCeEEeCC
Confidence 433210 2469999999998877653
No 89
>PRK02889 tolB translocation protein TolB; Provisional
Probab=93.39 E-value=8.2 Score=43.06 Aligned_cols=145 Identities=12% Similarity=0.087 Sum_probs=74.8
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|++|+.++.=..+.. .+. . ..+..| ++ +|++.....+ ..++|.+|+.+....++...
T Consensus 220 ~~I~~~dl~~g~~~~l~~--~~g--~-~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~----- 282 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN--FKG--S-NSAPAWSPDGRTLAVALSRDG-------NSQIYTVNADGSGLRRLTQS----- 282 (427)
T ss_pred cEEEEEECCCCCEEEeec--CCC--C-ccceEECCCCCEEEEEEccCC-------CceEEEEECCCCCcEECCCC-----
Confidence 469999999887665543 121 1 112333 34 4544333221 35799999987776666443
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
.......+....+..|++.....+ ...+|.++..+....++...+ ....+.++. +++.++
T Consensus 283 ~~~~~~~~wSpDG~~l~f~s~~~g--------------~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 283 SGIDTEPFFSPDGRSIYFTSDRGG--------------APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLA 343 (427)
T ss_pred CCCCcCeEEcCCCCEEEEEecCCC--------------CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEE
Confidence 111112222222444554332111 135888988877777775322 111122222 454444
Q ss_pred ecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
|....+ + ...|++||+.+.....+.
T Consensus 344 ~~s~~~---------g--~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 344 YISRVG---------G--AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEccC---------C--cEEEEEEECCCCCeEEcc
Confidence 443221 0 136999999888766554
No 90
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.37 E-value=2.8 Score=44.77 Aligned_cols=142 Identities=18% Similarity=0.279 Sum_probs=86.5
Q ss_pred CEEEEEcCeecCCCceeee-ccEEEEEcCCC-----cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCcccccc
Q 005655 82 TELILYGGEFYNGNKTYVY-GDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~-ndv~~yd~~~~-----~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~ 155 (685)
..++|+|-.+..+...... ..+++|++... +++.+.... .+-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~--~~g~V~ai~~~~~~lv~~~g------------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE--VKGPVTAICSFNGRLVVAVG------------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE--ESS-EEEEEEETTEEEEEET-------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe--ecCcceEhhhhCCEEEEeec-------------
Confidence 5788888766554433233 77999999985 666665433 23335777788998777666
Q ss_pred CeEEEEECCCCc-EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 156 KDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 156 ~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
+.+.+|++.... +..... ...+-.-.++.+++++|++ |-... .-.++.|+....+-..+... +.
T Consensus 107 ~~l~v~~l~~~~~l~~~~~--~~~~~~i~sl~~~~~~I~v-gD~~~-------sv~~~~~~~~~~~l~~va~d-----~~ 171 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAF--YDSPFYITSLSVFKNYILV-GDAMK-------SVSLLRYDEENNKLILVARD-----YQ 171 (321)
T ss_dssp TEEEEEEEETTSSEEEEEE--E-BSSSEEEEEEETTEEEE-EESSS-------SEEEEEEETTTE-EEEEEEE-----SS
T ss_pred CEEEEEEccCcccchhhhe--ecceEEEEEEeccccEEEE-EEccc-------CEEEEEEEccCCEEEEEEec-----CC
Confidence 457788887777 887776 3344466677777886665 33211 12345667766667777665 56
Q ss_pred CccceeEEEe-CCEEEEEec
Q 005655 235 PRSGFQFFVY-QDEVFLYGG 253 (685)
Q Consensus 235 ~Rs~~s~~~~-~~~Iyv~GG 253 (685)
++...++..+ ++..++.+-
T Consensus 172 ~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 172 PRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp -BEEEEEEEE-SSSEEEEEE
T ss_pred CccEEEEEEecCCcEEEEEc
Confidence 7776666666 544444443
No 91
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.98 E-value=13 Score=41.43 Aligned_cols=194 Identities=13% Similarity=0.168 Sum_probs=106.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.++|++|+.+++=+.++... .........-+ ..|++.-.... ..++|++|+.++.++++.. .+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~---g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~dl~~g~~~~LT~--~~~- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ---GMLVVSDVSKDGSKLLLTMAPKG---------QPDIYLYDTNTKTLTQITN--YPG- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecCC---CcEEeeEECCCCCEEEEEEccCC---------CcEEEEEECCCCcEEEccc--CCC-
Confidence 37999999988777776421 11111112223 35554433211 2589999999999999865 222
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
..+..... +..||+.-...+ ..+||++|+.+....++... + .+.......+..|++.......
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~g-------~~~Iy~~dl~~g~~~rlt~~--g-----~~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRLG-------YPNIFMKKLNSGSVEQVVFH--G-----KNNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred -ccCccEECCCCCEEEEEECCCC-------CceEEEEECCCCCeEeCccC--C-----CcCceECCCCCEEEEEEcCCCc
Confidence 11111211 346666543321 35899999999988877653 1 1122333335555544432211
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEE
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (685)
..+....+++++|+.+..+..+...+ ....-...-+|+.++|-.... ....|+.++
T Consensus 343 --------~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~-----------~~~~L~~~~ 398 (419)
T PRK04043 343 --------EFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYLG-----------NQSALGIIR 398 (419)
T ss_pred --------ccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEccC-----------CcEEEEEEe
Confidence 00111357999999999988886532 111111122565555543221 134699999
Q ss_pred CCCCcEEEEEe
Q 005655 338 LDNHRWYPLEL 348 (685)
Q Consensus 338 ~~t~~W~~l~~ 348 (685)
+..+.=..++.
T Consensus 399 l~g~~~~~l~~ 409 (419)
T PRK04043 399 LNYNKSFLFPL 409 (419)
T ss_pred cCCCeeEEeec
Confidence 98776666654
No 92
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.79 E-value=12 Score=37.95 Aligned_cols=163 Identities=12% Similarity=0.111 Sum_probs=85.5
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC--C-CCCcceeEEEEECCEEEEEcCccCCCCCccccccCe
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN--S-PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~--~-P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
++.|||... ..+.++|+.+++++.+.... . +..+.+..++.-++.||+.--....... .....
T Consensus 51 ~g~l~v~~~-----------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~---~~~g~ 116 (246)
T PF08450_consen 51 DGRLYVADS-----------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG---IDPGS 116 (246)
T ss_dssp TSEEEEEET-----------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC---GGSEE
T ss_pred CCEEEEEEc-----------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccc---ccccc
Confidence 577777665 23466799999998776541 1 3344444444446888876432211111 00167
Q ss_pred EEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCC--CceEEeccCCCCCCC
Q 005655 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--FKWQEIKPRFGSMWP 233 (685)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t--~~W~~v~~~~~~~~P 233 (685)
+|++++. ++...+... + ..-.++++- ++.||+.-- ..+.||.|++.. ..+....... ..+
T Consensus 117 v~~~~~~-~~~~~~~~~-~---~~pNGi~~s~dg~~lyv~ds---------~~~~i~~~~~~~~~~~~~~~~~~~--~~~ 180 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADG-L---GFPNGIAFSPDGKTLYVADS---------FNGRIWRFDLDADGGELSNRRVFI--DFP 180 (246)
T ss_dssp EEEEETT-SEEEEEEEE-E---SSEEEEEEETTSSEEEEEET---------TTTEEEEEEEETTTCCEEEEEEEE--E-S
T ss_pred eEEECCC-CeEEEEecC-c---ccccceEECCcchheeeccc---------ccceeEEEeccccccceeeeeeEE--EcC
Confidence 9999998 666665431 1 112234443 346777422 245699998864 3243222110 001
Q ss_pred CC-ccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 234 SP-RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 234 ~~-Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
.. ..--.+++. ++.||+..-... .|++|++....-..+..
T Consensus 181 ~~~g~pDG~~vD~~G~l~va~~~~~----------------~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGNLWVADWGGG----------------RIVVFDPDGKLLREIEL 222 (246)
T ss_dssp SSSCEEEEEEEBTTS-EEEEEETTT----------------EEEEEETTSCEEEEEE-
T ss_pred CCCcCCCcceEcCCCCEEEEEcCCC----------------EEEEECCCccEEEEEcC
Confidence 11 112234444 788888643222 38999999666666653
No 93
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.76 E-value=34 Score=42.92 Aligned_cols=159 Identities=9% Similarity=0.094 Sum_probs=85.1
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC-----------CCccceEEEE--CCEEEEEccccC
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS-----------PRSGHRMVLY--KHKIIVFGGFYD 200 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-----------~Rsgh~~v~~--~~~lyv~GG~~~ 200 (685)
++.|||.... .+.+|+||+.++....+...+... ...-+++++. ++.|||....
T Consensus 694 ~g~LyVad~~-----------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-- 760 (1057)
T PLN02919 694 NEKVYIAMAG-----------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-- 760 (1057)
T ss_pred CCeEEEEECC-----------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--
Confidence 4778887532 256899999887665543322100 0111223333 3468887542
Q ss_pred CCCceeeeceEEEEEcCCCceEEeccCC---------CC----CCCCCcc--ceeEEEe-CCEEEEEecccCCCCcccCC
Q 005655 201 TLREVRYYNDLYVFDLDQFKWQEIKPRF---------GS----MWPSPRS--GFQFFVY-QDEVFLYGGYSKEVSTDKNQ 264 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W~~v~~~~---------~~----~~P~~Rs--~~s~~~~-~~~Iyv~GG~~~~~~~~~~~ 264 (685)
.+.|.+||+.+.....+.... .+ .....+. -.++++. ++.|||....+..
T Consensus 761 -------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r------- 826 (1057)
T PLN02919 761 -------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK------- 826 (1057)
T ss_pred -------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-------
Confidence 367999998876543322100 00 0000001 1133333 5678887665443
Q ss_pred CCCCceeeeEEEEeCCCceeEEeecCCCC--C-----CC--cceeEEEEE-CCeEEEecceecccCCccccccccCCcEE
Q 005655 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMP--P-----GP--RAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~~~~~g~~--P-----~~--R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
+.+||+.+.....+...|.. + .. ..-+++++. ++++||.... .+.|.
T Consensus 827 ---------IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~--------------Nn~Ir 883 (1057)
T PLN02919 827 ---------IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN--------------NSLIR 883 (1057)
T ss_pred ---------EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC--------------CCEEE
Confidence 88999988877766543321 0 00 111234443 6788887543 35688
Q ss_pred EEECCCCc
Q 005655 335 GFQLDNHR 342 (685)
Q Consensus 335 ~yd~~t~~ 342 (685)
++|+.+..
T Consensus 884 vid~~~~~ 891 (1057)
T PLN02919 884 YLDLNKGE 891 (1057)
T ss_pred EEECCCCc
Confidence 99998875
No 94
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.63 E-value=3.8 Score=42.38 Aligned_cols=109 Identities=20% Similarity=0.297 Sum_probs=76.3
Q ss_pred EEE-ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccC
Q 005655 185 MVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263 (685)
Q Consensus 185 ~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~ 263 (685)
... .++.||.--|..+ -+.|..||+.+.+-...... |..-+|=+++.++++||.+--..+.
T Consensus 50 L~~~~~g~LyESTG~yG-------~S~l~~~d~~tg~~~~~~~l-----~~~~FgEGit~~~d~l~qLTWk~~~------ 111 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYG-------QSSLRKVDLETGKVLQSVPL-----PPRYFGEGITILGDKLYQLTWKEGT------ 111 (264)
T ss_dssp EEEEETTEEEEEECSTT-------EEEEEEEETTTSSEEEEEE------TTT--EEEEEEETTEEEEEESSSSE------
T ss_pred EEecCCCEEEEeCCCCC-------cEEEEEEECCCCcEEEEEEC-----CccccceeEEEECCEEEEEEecCCe------
Confidence 444 5789999888765 36788999999987766665 6677888999999999999776655
Q ss_pred CCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
+++||+.+. ..+... +-+.-|-++|..+..+|+--|. +.|+.+||.+-
T Consensus 112 ----------~f~yd~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS---------------~~L~~~dP~~f 159 (264)
T PF05096_consen 112 ----------GFVYDPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS---------------SRLYFLDPETF 159 (264)
T ss_dssp ----------EEEEETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS---------------SEEEEE-TTT-
T ss_pred ----------EEEEccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc---------------cceEEECCccc
Confidence 889999864 333321 2345788888888889988885 45999999864
No 95
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.43 E-value=5 Score=42.77 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=83.4
Q ss_pred CEEEEEcCccCCCCCcccccc-CeEEEEECCCC-----cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeee
Q 005655 135 NYLYIFGGEFTSPNQERFHHY-KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYY 208 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~-~dv~~yD~~t~-----~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~ 208 (685)
..++|+|.....+.. .... ..+..|++... .+..+... +..-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~--~~~~~Gri~v~~i~~~~~~~~~l~~i~~~--~~~g~V~ai~~~~~~lv~~~g----------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGED--PEPSSGRILVFEISESPENNFKLKLIHST--EVKGPVTAICSFNGRLVVAVG----------- 106 (321)
T ss_dssp SEEEEEEEEE--TTS--SS-S-EEEEEEEECSS-----EEEEEEEE--EESS-EEEEEEETTEEEEEET-----------
T ss_pred cCEEEEEeccccccc--ccccCcEEEEEEEEcccccceEEEEEEEE--eecCcceEhhhhCCEEEEeec-----------
Confidence 467777765443222 1112 56889998885 56655442 222335567777999776655
Q ss_pred ceEEEEEcCCCc-eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 209 NDLYVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 209 ~dv~~yD~~t~~-W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
+.+.+|++.... +...... ..+-...++.++++.|+ +|-.... -.++.|+....+-..+
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~-----~~~~~i~sl~~~~~~I~-vgD~~~s--------------v~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFY-----DSPFYITSLSVFKNYIL-VGDAMKS--------------VSLLRYDEENNKLILV 166 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE------BSSSEEEEEEETTEEE-EEESSSS--------------EEEEEEETTTE-EEEE
T ss_pred CEEEEEEccCcccchhhhee-----cceEEEEEEeccccEEE-EEEcccC--------------EEEEEEEccCCEEEEE
Confidence 467888888777 8888776 33445666666778555 4433322 1255678766667777
Q ss_pred ecCCCCCCCcceeEEEEE-CCeEEEecce
Q 005655 288 KKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (685)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~-~~~iyvfGG~ 315 (685)
+.. +.++...++.++ ++. .++++-
T Consensus 167 a~d---~~~~~v~~~~~l~d~~-~~i~~D 191 (321)
T PF03178_consen 167 ARD---YQPRWVTAAEFLVDED-TIIVGD 191 (321)
T ss_dssp EEE---SS-BEEEEEEEE-SSS-EEEEEE
T ss_pred Eec---CCCccEEEEEEecCCc-EEEEEc
Confidence 653 447777777777 655 444443
No 96
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.32 E-value=5.8 Score=41.10 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=74.9
Q ss_pred ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEE
Q 005655 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 133 ~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
.++.||.--|..+ -+.+.+||+.|++-..... +|..-.+-+++.++++||..-=. ....+
T Consensus 54 ~~g~LyESTG~yG---------~S~l~~~d~~tg~~~~~~~--l~~~~FgEGit~~~d~l~qLTWk---------~~~~f 113 (264)
T PF05096_consen 54 DDGTLYESTGLYG---------QSSLRKVDLETGKVLQSVP--LPPRYFGEGITILGDKLYQLTWK---------EGTGF 113 (264)
T ss_dssp ETTEEEEEECSTT---------EEEEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESS---------SSEEE
T ss_pred CCCEEEEeCCCCC---------cEEEEEEECCCCcEEEEEE--CCccccceeEEEECCEEEEEEec---------CCeEE
Confidence 4688998888644 2678899999998665555 67778899999999999998543 45789
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
+||+.+. ..+... +.+.-|.+++..+..||+--|.+ .++.+||.+.+
T Consensus 114 ~yd~~tl--~~~~~~-----~y~~EGWGLt~dg~~Li~SDGS~-----------------~L~~~dP~~f~ 160 (264)
T PF05096_consen 114 VYDPNTL--KKIGTF-----PYPGEGWGLTSDGKRLIMSDGSS-----------------RLYFLDPETFK 160 (264)
T ss_dssp EEETTTT--EEEEEE-----E-SSS--EEEECSSCEEEE-SSS-----------------EEEEE-TTT-S
T ss_pred EEccccc--eEEEEE-----ecCCcceEEEcCCCEEEEECCcc-----------------ceEEECCcccc
Confidence 9999864 455444 45568888998888999988753 38889998754
No 97
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.27 E-value=18 Score=38.51 Aligned_cols=128 Identities=9% Similarity=0.025 Sum_probs=56.3
Q ss_pred ccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCC-cEEEcccC-
Q 005655 101 GDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLK- 174 (685)
Q Consensus 101 ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~-~W~~~~~~- 174 (685)
+.+.+|++.++. ...+... +....-|++++. +..+|+..- ..+.+++||+.+. ........
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~-----------~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCL-----------KEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred CeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeC-----------CCCEEEEEEECCCCcccccCCCc
Confidence 456777775431 1112111 122223555554 246666442 1357899998763 22211000
Q ss_pred -CCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcC--CCceEEe---ccCCCCCCCCCccceeEEEe--
Q 005655 175 -GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLD--QFKWQEI---KPRFGSMWPSPRSGFQFFVY-- 244 (685)
Q Consensus 175 -g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~--t~~W~~v---~~~~~~~~P~~Rs~~s~~~~-- 244 (685)
..+.+..-+.++.. +.++|+.-.. .+.|.+|++. +.+...+ ...|. ..+.+|....+...
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~---------~~~v~v~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNEL---------NSSVDVWQLKDPHGEIECVQTLDMMPA-DFSDTRWAADIHITPD 238 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecC---------CCEEEEEEEeCCCCCEEEEEEEecCCC-cCCCCccceeEEECCC
Confidence 01111111223333 3478886332 3667777765 3454333 22211 11334544344444
Q ss_pred CCEEEEE
Q 005655 245 QDEVFLY 251 (685)
Q Consensus 245 ~~~Iyv~ 251 (685)
+..+|+.
T Consensus 239 g~~lyv~ 245 (330)
T PRK11028 239 GRHLYAC 245 (330)
T ss_pred CCEEEEe
Confidence 4456765
No 98
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.03 E-value=22 Score=39.20 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=85.0
Q ss_pred CeEEEEECCCC-----cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc---eEEeccC
Q 005655 156 KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPR 227 (685)
Q Consensus 156 ~dv~~yD~~t~-----~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~ 227 (685)
+.+|.+++... .|..+.+ +..-..+.+...++.+|+...... ....|..+++.+.. |..+-..
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~---~~~~~~~~v~~~~~~~yi~Tn~~a------~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSP---REDGVEYYVDHHGDRLYILTNDDA------PNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEE---SSSS-EEEEEEETTEEEEEE-TT-------TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CeEEEEeccccCCCcCCcEEEeC---CCCceEEEEEccCCEEEEeeCCCC------CCcEEEEecccccccccceeEEcC
Confidence 78999999875 7888765 222333334456889999876322 24578888888765 6644333
Q ss_pred CCCCCCCC-ccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC-CceeEEeecCCCCCCCcceeEEEEE
Q 005655 228 FGSMWPSP-RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 228 ~~~~~P~~-Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
+.. ..--.+.+.++.|++.-=.+ ....+.+|++. +..-..+.. |. .|....+.
T Consensus 323 -----~~~~~~l~~~~~~~~~Lvl~~~~~--------------~~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~ 377 (414)
T PF02897_consen 323 -----EDEDVSLEDVSLFKDYLVLSYREN--------------GSSRLRVYDLDDGKESREIPL----PE--AGSVSGVS 377 (414)
T ss_dssp ------SSSEEEEEEEEETTEEEEEEEET--------------TEEEEEEEETT-TEEEEEEES----SS--SSEEEEEE
T ss_pred -----CCCceeEEEEEEECCEEEEEEEEC--------------CccEEEEEECCCCcEEeeecC----Cc--ceEEeccC
Confidence 222 34445556688888775432 24568899988 443333332 22 22212221
Q ss_pred ----CCeEE-EecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 306 ----KKRAL-LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 306 ----~~~iy-vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.+.++ .+.+... -..+|.||+.+++...+..
T Consensus 378 ~~~~~~~~~~~~ss~~~------------P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 378 GDFDSDELRFSYSSFTT------------PPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp S-TT-SEEEEEEEETTE------------EEEEEEEETTTTCEEEEEE
T ss_pred CCCCCCEEEEEEeCCCC------------CCEEEEEECCCCCEEEEEe
Confidence 23333 3444432 3579999999998887653
No 99
>PRK13684 Ycf48-like protein; Provisional
Probab=92.02 E-value=20 Score=38.61 Aligned_cols=182 Identities=12% Similarity=0.105 Sum_probs=87.8
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcc-eeEEEEECCEEEEEcCccCCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~-~ha~v~~~~~iyvfGG~~~s~~~ 149 (685)
-..+++.. .++.|++|-. + .++.=.=.-.+|+.+.... |.... ..++.+.++..|+.|..
T Consensus 48 l~~v~F~d--~~~g~avG~~---G-------~il~T~DgG~tW~~~~~~~-~~~~~~l~~v~~~~~~~~~~G~~------ 108 (334)
T PRK13684 48 LLDIAFTD--PNHGWLVGSN---R-------TLLETNDGGETWEERSLDL-PEENFRLISISFKGDEGWIVGQP------ 108 (334)
T ss_pred eEEEEEeC--CCcEEEEECC---C-------EEEEEcCCCCCceECccCC-cccccceeeeEEcCCcEEEeCCC------
Confidence 33344442 4667777741 1 2332222345899875432 22222 22333335566766531
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
.-+++=.-.-.+|+.+... ...+..-.....+ .+.+|+.|.. ..|++=+-.-.+|+.+...
T Consensus 109 ------g~i~~S~DgG~tW~~~~~~-~~~~~~~~~i~~~~~~~~~~~g~~----------G~i~~S~DgG~tW~~~~~~- 170 (334)
T PRK13684 109 ------SLLLHTTDGGKNWTRIPLS-EKLPGSPYLITALGPGTAEMATNV----------GAIYRTTDGGKNWEALVED- 170 (334)
T ss_pred ------ceEEEECCCCCCCeEccCC-cCCCCCceEEEEECCCcceeeecc----------ceEEEECCCCCCceeCcCC-
Confidence 1232221123489988642 1112222223333 3456665542 2344433345789988654
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEE-eCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL-DPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y-d~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
..-+.+.+....+..|+..|..+. ++.. +....+|+.+.. +..+.-+++++. +
T Consensus 171 -----~~g~~~~i~~~~~g~~v~~g~~G~----------------i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~ 225 (334)
T PRK13684 171 -----AAGVVRNLRRSPDGKYVAVSSRGN----------------FYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPD 225 (334)
T ss_pred -----CcceEEEEEECCCCeEEEEeCCce----------------EEEEcCCCCCeEEEeeC----CCcccceeeeEcCC
Confidence 222445555554555555444433 2222 444568998854 334445555554 6
Q ss_pred CeEEEecc
Q 005655 307 KRALLFGG 314 (685)
Q Consensus 307 ~~iyvfGG 314 (685)
+++|++|.
T Consensus 226 g~~~~vg~ 233 (334)
T PRK13684 226 GNLWMLAR 233 (334)
T ss_pred CCEEEEec
Confidence 78888874
No 100
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=91.55 E-value=18 Score=37.10 Aligned_cols=228 Identities=11% Similarity=0.118 Sum_probs=96.8
Q ss_pred cceEEEEeccCCCEEEEEcCe-ecCCCceeeeccEEEEE---cCCCcEEEecCCCCCC-------CcceeEEEEECCEEE
Q 005655 70 SNCSLNINPLKETELILYGGE-FYNGNKTYVYGDLYRYD---VEKQEWKVISSPNSPP-------PRSAHQAVSWKNYLY 138 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~-~~~g~~~~~~ndv~~yd---~~~~~W~~l~s~~~P~-------~R~~ha~v~~~~~iy 138 (685)
..+++-++ +|+||.+=-. +..+.+ ......|+ ...+.|+...-+..|. .-.-|+.|.+++.-|
T Consensus 76 HCmSMGv~---~NRLfa~iEtR~~a~~k---m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~f 149 (367)
T PF12217_consen 76 HCMSMGVV---GNRLFAVIETRTVASNK---MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQF 149 (367)
T ss_dssp E-B-EEEE---TTEEEEEEEEEETTT-----EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-E
T ss_pred eeeeeeee---cceeeEEEeehhhhhhh---hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCce
Confidence 34566777 7999866543 222221 11223333 4678898543322222 345688899988778
Q ss_pred EEcCccCCCCCccccccCeEEEEECC--C--C-cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEE
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLK--T--N-QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~--t--~-~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
.+|=.++.... ..+ .+..|... + . .=..++.. .-..-+-.+.-.+++.||+..--... +..-..+.+
T Consensus 150 A~GyHnGD~sP---Re~-G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~---~~~GS~L~r 221 (367)
T PF12217_consen 150 AVGYHNGDVSP---REL-GFLYFSDAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLP---TNPGSSLHR 221 (367)
T ss_dssp EEEEEE-SSSS----EE-EEEEETTTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-T---TS---EEEE
T ss_pred eEEeccCCCCc---cee-eEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCC---CCCcceeee
Confidence 88754433222 011 12222111 0 0 11222221 12333455666789999998543221 223456777
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC---CCcccCCCCCCceeeeEEEE-------eCCCce
Q 005655 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE---VSTDKNQSEKGIIHSDLWSL-------DPRTWE 283 (685)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~---~~~~~~~~~~~~~~~dv~~y-------d~~t~~ 283 (685)
-+..-..|..+..+. ....+..-++..++.|||||--... ......+.-.+.+ ..++.. .+....
T Consensus 222 s~d~G~~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~y-PRtF~~k~nv~~W~~d~~e 296 (367)
T PF12217_consen 222 SDDNGQNWSSLRFPN----NVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANY-PRTFMLKVNVSDWSLDDVE 296 (367)
T ss_dssp ESSTTSS-EEEE-TT-------SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B---EEEEEEEETTT---TT--
T ss_pred ecccCCchhhccccc----cccccCCCceeeCCEEEEEeccccccccccCCCcccccccC-CceEEEEeecccCCccceE
Confidence 777788899988751 2233344456669999999953221 0000111111111 112222 355667
Q ss_pred eEEeecC---CCCCCCcceeEEEEE-CCeEE-Eeccee
Q 005655 284 WSKVKKI---GMPPGPRAGFSMCVH-KKRAL-LFGGVV 316 (685)
Q Consensus 284 W~~~~~~---g~~P~~R~g~s~~~~-~~~iy-vfGG~~ 316 (685)
|..+... |-.-..-.|.+.+++ ++.|| ||||..
T Consensus 297 w~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 297 WVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp -EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred EEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 8877653 323334455555555 67664 789864
No 101
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.11 E-value=16 Score=44.19 Aligned_cols=93 Identities=12% Similarity=0.045 Sum_probs=45.4
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCce-EEeccCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~ 232 (685)
..+.+||+.++.....-. .... .-.+++.. ++.+++.||.+ ..|.+||+.+..- ..+..
T Consensus 555 g~v~lWd~~~~~~~~~~~--~H~~-~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~~~~~~~~------ 616 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMK--EHEK-RVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGVSIGTIKT------ 616 (793)
T ss_pred CeEEEEECCCCeEEEEec--CCCC-CEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCcEEEEEec------
Confidence 347788887664322111 1111 11222222 45677777753 3577888865432 22211
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
........+...++.+++.|+.++. +.+||+.+.
T Consensus 617 ~~~v~~v~~~~~~g~~latgs~dg~----------------I~iwD~~~~ 650 (793)
T PLN00181 617 KANICCVQFPSESGRSLAFGSADHK----------------VYYYDLRNP 650 (793)
T ss_pred CCCeEEEEEeCCCCCEEEEEeCCCe----------------EEEEECCCC
Confidence 1111111111125677888877654 778887653
No 102
>PTZ00421 coronin; Provisional
Probab=91.10 E-value=33 Score=39.21 Aligned_cols=62 Identities=6% Similarity=-0.049 Sum_probs=34.4
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
+.+++.||.+ ..+.+||+.++.-...-. +... ....+.+ ++.+++.|+.+ ..|.
T Consensus 138 ~~iLaSgs~D-----------gtVrIWDl~tg~~~~~l~-~h~~---~V~sla~spdG~lLatgs~D---------g~Ir 193 (493)
T PTZ00421 138 MNVLASAGAD-----------MVVNVWDVERGKAVEVIK-CHSD---QITSLEWNLDGSLLCTTSKD---------KKLN 193 (493)
T ss_pred CCEEEEEeCC-----------CEEEEEECCCCeEEEEEc-CCCC---ceEEEEEECCCCEEEEecCC---------CEEE
Confidence 3577777753 347788988765322111 0111 1122223 56777777753 4578
Q ss_pred EEEcCCCc
Q 005655 213 VFDLDQFK 220 (685)
Q Consensus 213 ~yD~~t~~ 220 (685)
+||+.+..
T Consensus 194 IwD~rsg~ 201 (493)
T PTZ00421 194 IIDPRDGT 201 (493)
T ss_pred EEECCCCc
Confidence 89988764
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.69 E-value=18 Score=40.02 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=69.7
Q ss_pred EECCEEEEEcCccCCCCCccccccCeEEEEECCCC-cEEEcccCCCCCCCccceEEEE-C-CEEEEEccccCCCCceeee
Q 005655 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYY 208 (685)
Q Consensus 132 ~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g~P~~Rsgh~~v~~-~-~~lyv~GG~~~~~~~~~~~ 208 (685)
..++.|++.||++.. +-.||+.+. .|..--.-+.|.- .++.+ + ..|...||
T Consensus 163 ~~~~hivvtGsYDg~-----------vrl~DtR~~~~~v~elnhg~pVe----~vl~lpsgs~iasAgG----------- 216 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGK-----------VRLWDTRSLTSRVVELNHGCPVE----SVLALPSGSLIASAGG----------- 216 (487)
T ss_pred cCCCeEEEecCCCce-----------EEEEEeccCCceeEEecCCCcee----eEEEcCCCCEEEEcCC-----------
Confidence 346889999998653 556777666 4543222122221 12333 3 34555566
Q ss_pred ceEEEEEcCCCceEEeccCCCCCCCCCccce-----eEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF-----QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~-----s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
|.+-++|+.+.. +.+..+..| ++... ++.-.+-||.+.. +-+|| +.
T Consensus 217 n~vkVWDl~~G~----------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~----------------VKVfd--~t 268 (487)
T KOG0310|consen 217 NSVKVWDLTTGG----------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH----------------VKVFD--TT 268 (487)
T ss_pred CeEEEEEecCCc----------eehhhhhcccceEEEEEeecCCceEeecccccc----------------eEEEE--cc
Confidence 567777765432 222222222 11222 5577788888765 66787 33
Q ss_pred eeEEeecCCCCCCCcceeEEEEE-CCeEEEecceec
Q 005655 283 EWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (685)
Q Consensus 283 ~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~ 317 (685)
.|..+..... |.|- .++++- +++.+++|+.++
T Consensus 269 ~~Kvv~s~~~-~~pv--Lsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 269 NYKVVHSWKY-PGPV--LSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred ceEEEEeeec-ccce--eeEEecCCCceEEEecccc
Confidence 4555554432 3332 344443 788889998765
No 104
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.65 E-value=21 Score=41.13 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=64.7
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCC--C-C---CCCccceEEEECCEEEEEccccC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG--C-P---SPRSGHRMVLYKHKIIVFGGFYD 200 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g--~-P---~~Rsgh~~v~~~~~lyv~GG~~~ 200 (685)
+-+++++.||+.... +.++.+|..|++ |+.-.... . + ........++.+++||+...
T Consensus 64 tPvv~~g~vyv~s~~------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--- 128 (527)
T ss_pred CCEEECCEEEEECCC------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---
Confidence 445668999986542 458889988764 87643211 0 1 01112234566788876322
Q ss_pred CCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEe
Q 005655 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (685)
...|+++|..|.+ |+.-..... .......+.++.++.||+-...... .....++.||
T Consensus 129 -------dg~l~ALDa~TGk~~W~~~~~~~~---~~~~~tssP~v~~g~Vivg~~~~~~-----------~~~G~v~AlD 187 (527)
T TIGR03075 129 -------DARLVALDAKTGKVVWSKKNGDYK---AGYTITAAPLVVKGKVITGISGGEF-----------GVRGYVTAYD 187 (527)
T ss_pred -------CCEEEEEECCCCCEEeeccccccc---ccccccCCcEEECCEEEEeeccccc-----------CCCcEEEEEE
Confidence 2468999998764 765322100 0011222334557777664321110 1223477888
Q ss_pred CCCc--eeEEe
Q 005655 279 PRTW--EWSKV 287 (685)
Q Consensus 279 ~~t~--~W~~~ 287 (685)
+.+. .|+.-
T Consensus 188 ~~TG~~lW~~~ 198 (527)
T TIGR03075 188 AKTGKLVWRRY 198 (527)
T ss_pred CCCCceeEecc
Confidence 7654 46543
No 105
>PRK02889 tolB translocation protein TolB; Provisional
Probab=90.34 E-value=34 Score=38.14 Aligned_cols=182 Identities=10% Similarity=-0.023 Sum_probs=91.1
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|++|+.+++=..++.. + ....+.+.. + ..|++...... ..++|.+|+.+....++... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~~--~--g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~- 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF--K--GSNSAPAWSPDGRTLAVALSRDG---------NSQIYTVNADGSGLRRLTQS--S- 283 (427)
T ss_pred cEEEEEECCCCCEEEeecC--C--CCccceEECCCCCEEEEEEccCC---------CceEEEEECCCCCcEECCCC--C-
Confidence 3689999988876666432 1 111122222 3 35554333211 25799999988877766541 1
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCC
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~ 258 (685)
.........-++..++|..-.. + ...+|.+++.+.....+.... ......++...+..|++.....+.
T Consensus 284 ~~~~~~~wSpDG~~l~f~s~~~-g-----~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g~- 351 (427)
T PRK02889 284 GIDTEPFFSPDGRSIYFTSDRG-G-----APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGGA- 351 (427)
T ss_pred CCCcCeEEcCCCCEEEEEecCC-C-----CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCCc-
Confidence 1111111222444334432111 1 247889998888777776431 111112222224455544332211
Q ss_pred CcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEE
Q 005655 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (685)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (685)
..++++|+.+.....+..... ..+.... +++.++|...... ...+++++
T Consensus 352 -------------~~I~v~d~~~g~~~~lt~~~~------~~~p~~spdg~~l~~~~~~~g-----------~~~l~~~~ 401 (427)
T PRK02889 352 -------------FKLYVQDLATGQVTALTDTTR------DESPSFAPNGRYILYATQQGG-----------RSVLAAVS 401 (427)
T ss_pred -------------EEEEEEECCCCCeEEccCCCC------ccCceECCCCCEEEEEEecCC-----------CEEEEEEE
Confidence 258899988887776643211 1111222 6676666654321 23477887
Q ss_pred CCC
Q 005655 338 LDN 340 (685)
Q Consensus 338 ~~t 340 (685)
+..
T Consensus 402 ~~g 404 (427)
T PRK02889 402 SDG 404 (427)
T ss_pred CCC
Confidence 743
No 106
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.68 E-value=35 Score=37.60 Aligned_cols=149 Identities=20% Similarity=0.211 Sum_probs=85.2
Q ss_pred eccEEEEEcCCC-----cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc---EEE-
Q 005655 100 YGDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQ- 170 (685)
Q Consensus 100 ~ndv~~yd~~~~-----~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~---W~~- 170 (685)
.+++|.++.... .|+.+... ..-..+.+...++.+|+.-..... ...+..+++.+.. |..
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~---~~~~~~~v~~~~~~~yi~Tn~~a~--------~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR---EDGVEYYVDHHGDRLYILTNDDAP--------NGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES---SSS-EEEEEEETTEEEEEE-TT-T--------T-EEEEEETTSTSGGGEEEE
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC---CCceEEEEEccCCEEEEeeCCCCC--------CcEEEEecccccccccceeE
Confidence 378999999875 89888542 222333444458899988763322 3568889988775 664
Q ss_pred cccCCCCCC-CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcC-CCceEEeccCCCCCCCCCccceeEE--EeCC
Q 005655 171 LNLKGCPSP-RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRFGSMWPSPRSGFQFF--VYQD 246 (685)
Q Consensus 171 ~~~~g~P~~-Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~~W~~v~~~~~~~~P~~Rs~~s~~--~~~~ 246 (685)
+.+ +.. ..--.+.+.+++|++.-=.+. ...|.+|++. +..-..++.+ ..-.-.++. ...+
T Consensus 320 l~~---~~~~~~l~~~~~~~~~Lvl~~~~~~-------~~~l~v~~~~~~~~~~~~~~p------~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 320 LIP---EDEDVSLEDVSLFKDYLVLSYRENG-------SSRLRVYDLDDGKESREIPLP------EAGSVSGVSGDFDSD 383 (414)
T ss_dssp EE-----SSSEEEEEEEEETTEEEEEEEETT-------EEEEEEEETT-TEEEEEEESS------SSSEEEEEES-TT-S
T ss_pred EcC---CCCceeEEEEEEECCEEEEEEEECC-------ccEEEEEECCCCcEEeeecCC------cceEEeccCCCCCCC
Confidence 333 223 244455566889888754322 5688999998 3333333332 111101111 1133
Q ss_pred E-EEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 247 E-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 247 ~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
. .|.+.++. .-..+|.||+.+++.+.++.
T Consensus 384 ~~~~~~ss~~--------------~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 384 ELRFSYSSFT--------------TPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEEEEEEETT--------------EEEEEEEEETTTTCEEEEEE
T ss_pred EEEEEEeCCC--------------CCCEEEEEECCCCCEEEEEe
Confidence 3 44444443 33579999999998887753
No 107
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=89.44 E-value=23 Score=36.05 Aligned_cols=145 Identities=21% Similarity=0.269 Sum_probs=81.2
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC-CEEEEEcCc
Q 005655 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGE 143 (685)
Q Consensus 65 ~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~ 143 (685)
.|.|-.|. +.+.|. .|.|++.||. ..+|+.|..+++.+..--+. .-+-|+++.-+ +.-++.|++
T Consensus 112 ~evPeINa-m~ldP~-enSi~~AgGD----------~~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~~~~qilsG~E 176 (325)
T KOG0649|consen 112 VEVPEINA-MWLDPS-ENSILFAGGD----------GVIYQVDLEDGRIQREYRGH---TDYVHSVVGRNANGQILSGAE 176 (325)
T ss_pred ccCCccce-eEeccC-CCcEEEecCC----------eEEEEEEecCCEEEEEEcCC---cceeeeeeecccCcceeecCC
Confidence 34455554 566665 4889999983 25899999999887654332 34556666543 344567777
Q ss_pred cCCCCCccccccCeEEEEECCCCcEEEc-ccCCC---CCCCccc--eEEEECCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 144 FTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGC---PSPRSGH--RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 144 ~~s~~~~~~~~~~dv~~yD~~t~~W~~~-~~~g~---P~~Rsgh--~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
++. +-++|+.|.+-.++ .+... -.|..+- .+...+.--.|.||- ..+-.|++.
T Consensus 177 DGt-----------vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG----------p~lslwhLr 235 (325)
T KOG0649|consen 177 DGT-----------VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG----------PKLSLWHLR 235 (325)
T ss_pred Ccc-----------EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC----------CceeEEecc
Confidence 553 66788888876543 22111 2222333 444455555566662 123444555
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEe
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~G 252 (685)
+.+-+.+- |.|-.-|-+..+++.|++.|
T Consensus 236 sse~t~vf-------pipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 236 SSESTCVF-------PIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred CCCceEEE-------ecccceeEeeeecceEEEec
Confidence 44444443 33333444555566666666
No 108
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.34 E-value=25 Score=36.31 Aligned_cols=191 Identities=18% Similarity=0.224 Sum_probs=98.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
.+++|++.|. .+..-..+..+..| ...+.+...-. +|-+-.|.+.|+++|.+|-.-. -.+.+.+
T Consensus 30 ~~~iy~~~~~--~~~~v~ey~~~~~f-~~~~~~~~~~~--Lp~~~~GtG~vVYngslYY~~~-----------~s~~Ivk 93 (250)
T PF02191_consen 30 SEKIYVTSGF--SGNTVYEYRNYEDF-LRNGRSSRTYK--LPYPWQGTGHVVYNGSLYYNKY-----------NSRNIVK 93 (250)
T ss_pred CCCEEEECcc--CCCEEEEEcCHhHH-hhcCCCceEEE--EeceeccCCeEEECCcEEEEec-----------CCceEEE
Confidence 4789999884 22222223333333 11222221111 2445556667778888776533 2478999
Q ss_pred EECCCCcEE---EcccCCC----CCCCcc---ceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC----CceEEecc
Q 005655 161 LDLKTNQWE---QLNLKGC----PSPRSG---HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ----FKWQEIKP 226 (685)
Q Consensus 161 yD~~t~~W~---~~~~~g~----P~~Rsg---h~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t----~~W~~v~~ 226 (685)
||+.++.-. .++..+. |-...+ .-.++-.+-|+|+-....... .-.|-.+|+.+ .+|..-
T Consensus 94 ydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g----~ivvskld~~tL~v~~tw~T~-- 167 (250)
T PF02191_consen 94 YDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG----NIVVSKLDPETLSVEQTWNTS-- 167 (250)
T ss_pred EECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC----cEEEEeeCcccCceEEEEEec--
Confidence 999998654 4433211 111112 222334566777654433211 12344556654 346532
Q ss_pred CCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-
Q 005655 227 RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~- 305 (685)
. +.+..+.++++ -|.||++-..... ...=.+.||+.+++=..+.- ..+.+-..++++-+
T Consensus 168 ~-----~k~~~~naFmv-CGvLY~~~s~~~~------------~~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YN 227 (250)
T PF02191_consen 168 Y-----PKRSAGNAFMV-CGVLYATDSYDTR------------DTEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYN 227 (250)
T ss_pred c-----CchhhcceeeE-eeEEEEEEECCCC------------CcEEEEEEECCCCceeceee--eeccccCceEeeeEC
Confidence 1 44455555444 4678888766533 12336789998776554432 12334445566655
Q ss_pred --CCeEEEec
Q 005655 306 --KKRALLFG 313 (685)
Q Consensus 306 --~~~iyvfG 313 (685)
+.+||++-
T Consensus 228 P~dk~LY~wd 237 (250)
T PF02191_consen 228 PRDKKLYAWD 237 (250)
T ss_pred CCCCeEEEEE
Confidence 57788875
No 109
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.10 E-value=22 Score=38.38 Aligned_cols=173 Identities=18% Similarity=0.225 Sum_probs=88.5
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCC---CCcceeEEEEE-CCEEEEEcC
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSP---PPRSAHQAVSW-KNYLYIFGG 142 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P---~~R~~ha~v~~-~~~iyvfGG 142 (685)
-.-|++.+.|. ++.||+..= | .+.|++|+..... .........| .|| |.+..- +..+||..-
T Consensus 144 ~h~H~v~~~pd-g~~v~v~dl----G-----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 144 PHPHQVVFSPD-GRFVYVPDL----G-----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNE 211 (345)
T ss_dssp TCEEEEEE-TT-SSEEEEEET----T-----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEET
T ss_pred ccceeEEECCC-CCEEEEEec----C-----CCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecC
Confidence 34577888873 356776531 1 2468888887765 5432211111 233 333332 368999875
Q ss_pred ccCCCCCccccccCeEEEEECC--CCcEEEcccCC-CCC---CC-ccceEEEE--CCEEEEEccccCCCCceeeeceEEE
Q 005655 143 EFTSPNQERFHHYKDFWMLDLK--TNQWEQLNLKG-CPS---PR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~--t~~W~~~~~~g-~P~---~R-sgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
. .+.+.+|+.. +..|+.+.... +|. .. ..+.+++. +++||+--.. .+.|.+
T Consensus 212 ~-----------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~---------~~sI~v 271 (345)
T PF10282_consen 212 L-----------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG---------SNSISV 271 (345)
T ss_dssp T-----------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---------TTEEEE
T ss_pred C-----------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---------CCEEEE
Confidence 3 2445555554 66666544311 222 22 22333333 5578885332 467888
Q ss_pred EEc--CCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 214 FDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 214 yD~--~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
|++ .+...+.+...+.+ ...||. +.+...+..||+.+..+.. -.+|..|..+..+..+..
T Consensus 272 f~~d~~~g~l~~~~~~~~~-G~~Pr~-~~~s~~g~~l~Va~~~s~~--------------v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPTG-GKFPRH-FAFSPDGRYLYVANQDSNT--------------VSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEECTTTTTEEEEEEEEES-SSSEEE-EEE-TTSSEEEEEETTTTE--------------EEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCceEEEEEEeCC-CCCccE-EEEeCCCCEEEEEecCCCe--------------EEEEEEeCCCCcEEEecc
Confidence 887 44566665544211 022332 2333346667765544332 235566778889988864
No 110
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.09 E-value=35 Score=38.07 Aligned_cols=153 Identities=11% Similarity=0.042 Sum_probs=85.3
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEECC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
.++|++|+.++.=+.+... + .........-++ +|++.-...+ ..++|.+|+.+..++++...+ .
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~--~-g~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~dl~~g~~~~LT~~~-----~ 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS--Q-GMLVVSDVSKDGSKLLLTMAPKG-------QPDIYLYDTNTKTLTQITNYP-----G 277 (419)
T ss_pred CEEEEEECCCCcEEEEecC--C-CcEEeeEECCCCCEEEEEEccCC-------CcEEEEEECCCCcEEEcccCC-----C
Confidence 4799999998877776541 1 111111122244 5544432211 358999999999999887652 1
Q ss_pred CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecc
Q 005655 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (685)
Q Consensus 235 ~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (685)
.-........+..||+.-...+ ..++|++|+.+...+++...+. ..... .-+++.++|-.
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g--------------~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~-SPDG~~Ia~~~ 337 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG--------------YPNIFMKKLNSGSVEQVVFHGK-----NNSSV-STYKNYIVYSS 337 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEeCccCCC-----cCceE-CCCCCEEEEEE
Confidence 1112233333566777654321 2469999999888877754322 11211 22444444433
Q ss_pred eecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
...... .+....+|+++|+.+..+..|..
T Consensus 338 ~~~~~~-----~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 338 RETNNE-----FGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred cCCCcc-----cCCCCcEEEEEECCCCCeEECCC
Confidence 221100 01113679999999998887765
No 111
>PRK01742 tolB translocation protein TolB; Provisional
Probab=88.74 E-value=44 Score=37.23 Aligned_cols=159 Identities=9% Similarity=0.023 Sum_probs=77.9
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.+|++|+.++.-+.+.... . ...+.+.. ++..++++..... .-++|.+|+.++....+... ..
T Consensus 229 ~i~i~dl~tg~~~~l~~~~--g--~~~~~~wSPDG~~La~~~~~~g--------~~~Iy~~d~~~~~~~~lt~~--~~-- 292 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFR--G--HNGAPAFSPDGSRLAFASSKDG--------VLNIYVMGANGGTPSQLTSG--AG-- 292 (429)
T ss_pred EEEEEeCCCCceEEEecCC--C--ccCceeECCCCCEEEEEEecCC--------cEEEEEEECCCCCeEeeccC--CC--
Confidence 5899999887766665421 1 11222222 4444444321111 13699999988887776541 11
Q ss_pred ccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCC
Q 005655 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (685)
Q Consensus 181 sgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~ 258 (685)
......| ++..++|...... ...||.++.....-..+.. .. +.......+..|++.++
T Consensus 293 -~~~~~~wSpDG~~i~f~s~~~g------~~~I~~~~~~~~~~~~l~~-------~~-~~~~~SpDG~~ia~~~~----- 352 (429)
T PRK01742 293 -NNTEPSWSPDGQSILFTSDRSG------SPQVYRMSASGGGASLVGG-------RG-YSAQISADGKTLVMING----- 352 (429)
T ss_pred -CcCCEEECCCCCEEEEEECCCC------CceEEEEECCCCCeEEecC-------CC-CCccCCCCCCEEEEEcC-----
Confidence 1222333 4443344321111 2467888776554333311 11 11222222445555433
Q ss_pred CcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecce
Q 005655 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (685)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~ 315 (685)
+.++.+|+.+..+..+.... . ..+..+. +++++++++.
T Consensus 353 -------------~~i~~~Dl~~g~~~~lt~~~-----~-~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 353 -------------DNVVKQDLTSGSTEVLSSTF-----L-DESPSISPNGIMIIYSST 391 (429)
T ss_pred -------------CCEEEEECCCCCeEEecCCC-----C-CCCceECCCCCEEEEEEc
Confidence 12677898888887664321 1 1222222 6777777764
No 112
>PTZ00421 coronin; Provisional
Probab=88.60 E-value=40 Score=38.54 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=45.3
Q ss_pred cEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEE-EcccCCCCC
Q 005655 102 DLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKGCPS 178 (685)
Q Consensus 102 dv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~-~~~~~g~P~ 178 (685)
.+.+||+.+.+-. .+... ...-.+++.. ++.+++.|+.+ ..+.+||+.++.-. .+.. ...
T Consensus 149 tVrIWDl~tg~~~~~l~~h----~~~V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~~v~tl~~--H~~ 211 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCH----SDQITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGTIVSSVEA--HAS 211 (493)
T ss_pred EEEEEECCCCeEEEEEcCC----CCceEEEEEECCCCEEEEecCC-----------CEEEEEECCCCcEEEEEec--CCC
Confidence 5778888776433 22111 1111222222 56677777753 34778999876522 1111 111
Q ss_pred CCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 179 ~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.+.. .++.. ++..++.+|+.... -..|.+||+.+.
T Consensus 212 ~~~~-~~~w~~~~~~ivt~G~s~s~-----Dr~VklWDlr~~ 247 (493)
T PTZ00421 212 AKSQ-RCLWAKRKDLIITLGCSKSQ-----QRQIMLWDTRKM 247 (493)
T ss_pred Ccce-EEEEcCCCCeEEEEecCCCC-----CCeEEEEeCCCC
Confidence 1111 12222 33444555543211 356888898654
No 113
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.53 E-value=12 Score=38.78 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=94.4
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
++||++.|.... ....+..+..| ...+.+...-. +|.+-.|.+.+++++.||..-.. .+.|..|
T Consensus 31 ~~iy~~~~~~~~----~v~ey~~~~~f-~~~~~~~~~~~--Lp~~~~GtG~vVYngslYY~~~~---------s~~Ivky 94 (250)
T PF02191_consen 31 EKIYVTSGFSGN----TVYEYRNYEDF-LRNGRSSRTYK--LPYPWQGTGHVVYNGSLYYNKYN---------SRNIVKY 94 (250)
T ss_pred CCEEEECccCCC----EEEEEcCHhHH-hhcCCCceEEE--EeceeccCCeEEECCcEEEEecC---------CceEEEE
Confidence 678888886443 12223333333 12223332222 47777888889999999986542 5789999
Q ss_pred EcCCCceE-EeccCCCCC---CCCCccc---eeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc----e
Q 005655 215 DLDQFKWQ-EIKPRFGSM---WPSPRSG---FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW----E 283 (685)
Q Consensus 215 D~~t~~W~-~v~~~~~~~---~P~~Rs~---~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~----~ 283 (685)
|+.+..-. ....+..+- .|....+ .-+++-.+.|+|+=..... .+. --+-.+||.+. +
T Consensus 95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~---------~g~--ivvskld~~tL~v~~t 163 (250)
T PF02191_consen 95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN---------NGN--IVVSKLDPETLSVEQT 163 (250)
T ss_pred ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC---------CCc--EEEEeeCcccCceEEE
Confidence 99988766 332221111 1222222 3345557788888554432 111 12445666543 5
Q ss_pred eEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 284 WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 284 W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
|..- .+.+.+ ..+.++-|.||++....... ..-.++||+.+++=..+.+
T Consensus 164 w~T~-----~~k~~~-~naFmvCGvLY~~~s~~~~~----------~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 164 WNTS-----YPKRSA-GNAFMVCGVLYATDSYDTRD----------TEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred EEec-----cCchhh-cceeeEeeEEEEEEECCCCC----------cEEEEEEECCCCceeceee
Confidence 5532 122222 23556678888887664311 3347899999887665555
No 114
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.33 E-value=29 Score=39.47 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=65.1
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCC-C-CCC-CccceEEEEC-CEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG-C-PSP-RSGHRMVLYK-HKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g-~-P~~-Rsgh~~v~~~-~~lyv~GG~~~~~ 202 (685)
+-++.++.||+.... ..++.+|..|++ |+.-.... . ..+ -.....++.+ +.||+...
T Consensus 56 sPvv~~g~vy~~~~~------------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~----- 118 (488)
T cd00216 56 TPLVVDGDMYFTTSH------------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF----- 118 (488)
T ss_pred CCEEECCEEEEeCCC------------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-----
Confidence 346678999986542 458888988764 87643211 0 001 1112234456 77776432
Q ss_pred CceeeeceEEEEEcCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC
Q 005655 203 REVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (685)
...|++||..+. .|+.-..... .+......+.++.++.+| +|....... .......+++||..
T Consensus 119 -----~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~~~~v~-vg~~~~~~~-------~~~~~g~v~alD~~ 183 (488)
T cd00216 119 -----DGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIVKKLVI-IGSSGAEFF-------ACGVRGALRAYDVE 183 (488)
T ss_pred -----CCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEECCEEE-Eeccccccc-------cCCCCcEEEEEECC
Confidence 246889998764 4775433210 000111223344465555 443322100 00123458899986
Q ss_pred Cc--eeEEee
Q 005655 281 TW--EWSKVK 288 (685)
Q Consensus 281 t~--~W~~~~ 288 (685)
+. .|..-.
T Consensus 184 TG~~~W~~~~ 193 (488)
T cd00216 184 TGKLLWRFYT 193 (488)
T ss_pred CCceeeEeec
Confidence 54 687643
No 115
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.32 E-value=41 Score=36.30 Aligned_cols=194 Identities=15% Similarity=0.117 Sum_probs=91.9
Q ss_pred EEEEEcCCCcEEEecCCCCCCCcceeEEEEE---CCEEEEEcCccCCCCCccccccCeEEEE--ECCCCcEEEcccCCCC
Q 005655 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWML--DLKTNQWEQLNLKGCP 177 (685)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyvfGG~~~s~~~~~~~~~~dv~~y--D~~t~~W~~~~~~g~P 177 (685)
++.||..+.++..+.... .-...+..++ ++.||+....... ...+..| +..+++.+.+.. .+
T Consensus 17 ~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~~~~~~LY~~~e~~~~--------~g~v~~~~i~~~~g~L~~~~~--~~ 83 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVA---EGENPSWLAVSPDGRRLYVVNEGSGD--------SGGVSSYRIDPDTGTLTLLNS--VP 83 (345)
T ss_dssp EEEEETTTTEEEEEEEEE---ESSSECCEEE-TTSSEEEEEETTSST--------TTEEEEEEEETTTTEEEEEEE--EE
T ss_pred EEEEcCCCCCceEeeeec---CCCCCceEEEEeCCCEEEEEEccccC--------CCCEEEEEECCCcceeEEeee--ec
Confidence 455666889998665311 1111222222 5789988654311 1334444 455568887765 33
Q ss_pred CCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCC-ceEEec-------cCCCCCCCCCccceeEEEe--
Q 005655 178 SPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIK-------PRFGSMWPSPRSGFQFFVY-- 244 (685)
Q Consensus 178 ~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~-------~~~~~~~P~~Rs~~s~~~~-- 244 (685)
....+.+.+.+ +.+||+. -+. ...+.+|++... .-.... ..+.......-.-|++...
T Consensus 84 ~~g~~p~~i~~~~~g~~l~va-ny~--------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 84 SGGSSPCHIAVDPDGRFLYVA-NYG--------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD 154 (345)
T ss_dssp ESSSCEEEEEECTTSSEEEEE-ETT--------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred cCCCCcEEEEEecCCCEEEEE-Ecc--------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence 22333333333 4456653 221 245777777653 211110 0000000122234555555
Q ss_pred CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce--eEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccC
Q 005655 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEM 320 (685)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~ 320 (685)
+..+|+.. .. .+.+++|+..... ........ .|..-.-..++++ +..+||..-.
T Consensus 155 g~~v~v~d-lG---------------~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~----- 212 (345)
T PF10282_consen 155 GRFVYVPD-LG---------------ADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNEL----- 212 (345)
T ss_dssp SSEEEEEE-TT---------------TTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETT-----
T ss_pred CCEEEEEe-cC---------------CCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCC-----
Confidence 44566653 11 2347777765544 55533321 1222222345555 4578888654
Q ss_pred CccccccccCCcEEEEECC--CCcEEEEEec
Q 005655 321 KGDVIMSLFLNELYGFQLD--NHRWYPLELR 349 (685)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~--t~~W~~l~~~ 349 (685)
.+.|.+|++. +..|..+...
T Consensus 213 ---------s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 213 ---------SNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp ---------TTEEEEEEEETTTTEEEEEEEE
T ss_pred ---------CCcEEEEeecccCCceeEEEEe
Confidence 3556666665 7777766653
No 116
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.85 E-value=15 Score=38.12 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=79.9
Q ss_pred EEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC-Ccc
Q 005655 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSG 182 (685)
Q Consensus 105 ~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~-Rsg 182 (685)
++||.++.-+..+.+ ..-.-+.+|+. ++.+|+..= .-|-+-+.|+.+..=+.++. |.+ ..+
T Consensus 172 rLdPa~~~i~vfpaP---qG~gpyGi~atpdGsvwyasl-----------agnaiaridp~~~~aev~p~---P~~~~~g 234 (353)
T COG4257 172 RLDPARNVISVFPAP---QGGGPYGICATPDGSVWYASL-----------AGNAIARIDPFAGHAEVVPQ---PNALKAG 234 (353)
T ss_pred ecCcccCceeeeccC---CCCCCcceEECCCCcEEEEec-----------cccceEEcccccCCcceecC---CCccccc
Confidence 567777666655543 23333556665 677776521 12457788888876555554 444 222
Q ss_pred ceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCC
Q 005655 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVS 259 (685)
Q Consensus 183 h~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~ 259 (685)
.+-+.. -+.+++--- -...++.||+.+..|..-+.+. ..+|-. ++-+. .+.+++.---
T Consensus 235 sRriwsdpig~~wittw---------g~g~l~rfdPs~~sW~eypLPg----s~arpy-s~rVD~~grVW~sea~----- 295 (353)
T COG4257 235 SRRIWSDPIGRAWITTW---------GTGSLHRFDPSVTSWIEYPLPG----SKARPY-SMRVDRHGRVWLSEAD----- 295 (353)
T ss_pred ccccccCccCcEEEecc---------CCceeeEeCcccccceeeeCCC----CCCCcc-eeeeccCCcEEeeccc-----
Confidence 222222 345666411 1357999999999999987762 233333 33333 5666664222
Q ss_pred cccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
.+.+.+||+.+.+.+.+.
T Consensus 296 -----------agai~rfdpeta~ftv~p 313 (353)
T COG4257 296 -----------AGAIGRFDPETARFTVLP 313 (353)
T ss_pred -----------cCceeecCcccceEEEec
Confidence 234789999999998874
No 117
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=87.37 E-value=0.15 Score=55.34 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=6.2
Q ss_pred eeeeecccc
Q 005655 479 EITLDDLYS 487 (685)
Q Consensus 479 e~tl~D~y~ 487 (685)
-+|+||+-.
T Consensus 25 KlTi~Dtlk 33 (458)
T PF10446_consen 25 KLTINDTLK 33 (458)
T ss_pred cccHHHHHH
Confidence 378888744
No 118
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.17 E-value=12 Score=34.07 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=59.8
Q ss_pred EEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCC
Q 005655 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (685)
Q Consensus 186 v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (685)
+.++|-||-..-.. ....+.|.+||+.+.+|+.+..+ ...........++.++|+|.++.-....
T Consensus 2 icinGvly~~a~~~-----~~~~~~IvsFDv~~E~f~~i~~P--~~~~~~~~~~~L~~~~G~L~~v~~~~~~-------- 66 (129)
T PF08268_consen 2 ICINGVLYWLAWSE-----DSDNNVIVSFDVRSEKFRFIKLP--EDPYSSDCSSTLIEYKGKLALVSYNDQG-------- 66 (129)
T ss_pred EEECcEEEeEEEEC-----CCCCcEEEEEEcCCceEEEEEee--eeeccccCccEEEEeCCeEEEEEecCCC--------
Confidence 45688888776651 12357899999999999998875 1113455666777779998887654432
Q ss_pred CCCceeeeEEEEe-CCCceeEEeec
Q 005655 266 EKGIIHSDLWSLD-PRTWEWSKVKK 289 (685)
Q Consensus 266 ~~~~~~~dv~~yd-~~t~~W~~~~~ 289 (685)
....-++|++. ..+..|++...
T Consensus 67 --~~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 67 --EPDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred --CcceEEEEEeeccccceEEEEEE
Confidence 02345799994 66789998754
No 119
>PRK01742 tolB translocation protein TolB; Provisional
Probab=86.84 E-value=49 Score=36.89 Aligned_cols=139 Identities=10% Similarity=0.102 Sum_probs=69.9
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (685)
..+|++|+.++.-..+.. .+. ... ...| ++..++++...+. ..++|.+|+.+.....+... +
T Consensus 228 ~~i~i~dl~tg~~~~l~~--~~g-~~~--~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt~~-----~ 291 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS--FRG-HNG--APAFSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLTSG-----A 291 (429)
T ss_pred cEEEEEeCCCCceEEEec--CCC-ccC--ceeECCCCCEEEEEEecCC------cEEEEEEECCCCCeEeeccC-----C
Confidence 468999998887666644 221 111 2233 4544444332111 13689999988877766543 1
Q ss_pred CCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEe
Q 005655 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (685)
Q Consensus 234 ~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvf 312 (685)
..-...+....+..|++.....+. ..+|.++..+..-..+.. .. +...+. +++.+++
T Consensus 292 ~~~~~~~wSpDG~~i~f~s~~~g~--------------~~I~~~~~~~~~~~~l~~-----~~---~~~~~SpDG~~ia~ 349 (429)
T PRK01742 292 GNNTEPSWSPDGQSILFTSDRSGS--------------PQVYRMSASGGGASLVGG-----RG---YSAQISADGKTLVM 349 (429)
T ss_pred CCcCCEEECCCCCEEEEEECCCCC--------------ceEEEEECCCCCeEEecC-----CC---CCccCCCCCCEEEE
Confidence 111222222223445544332221 257888776553333311 11 112222 4444444
Q ss_pred cceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
.+. +.++.+|+.+..+..+.
T Consensus 350 ~~~---------------~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 350 ING---------------DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred EcC---------------CCEEEEECCCCCeEEec
Confidence 432 24788999988887654
No 120
>PLN00181 protein SPA1-RELATED; Provisional
Probab=86.75 E-value=58 Score=39.51 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=44.6
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEE-EcccCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKGCPS 178 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~-~~~~~g~P~ 178 (685)
.+.+||..+++....-.. ....-.+++.. ++.+++.||.. ..+.+||+.+..-. .+..
T Consensus 556 ~v~lWd~~~~~~~~~~~~---H~~~V~~l~~~p~~~~~L~Sgs~D-----------g~v~iWd~~~~~~~~~~~~----- 616 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKE---HEKRVWSIDYSSADPTLLASGSDD-----------GSVKLWSINQGVSIGTIKT----- 616 (793)
T ss_pred eEEEEECCCCeEEEEecC---CCCCEEEEEEcCCCCCEEEEEcCC-----------CEEEEEECCCCcEEEEEec-----
Confidence 466677766543321111 11112233333 35677777753 34778888765322 2211
Q ss_pred CCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 179 PRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 179 ~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.....++.+ ++.++++|+.+ ..|.+||+.+.
T Consensus 617 -~~~v~~v~~~~~~g~~latgs~d---------g~I~iwD~~~~ 650 (793)
T PLN00181 617 -KANICCVQFPSESGRSLAFGSAD---------HKVYYYDLRNP 650 (793)
T ss_pred -CCCeEEEEEeCCCCCEEEEEeCC---------CeEEEEECCCC
Confidence 111222222 46677777743 46889998754
No 121
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.15 E-value=60 Score=35.97 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=27.4
Q ss_pred CCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEc
Q 005655 110 KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL 171 (685)
Q Consensus 110 ~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~ 171 (685)
-.+|..++.+. ..+-..+.++++ ++.+|++|.. ..+++-+-.-.+|+.+
T Consensus 165 G~tW~~~~~~~-~~p~~~~~i~~~~~~~~~ivg~~------------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 165 GETWERIPLSP-KLPGEPVLIKATGPKSAEMVTDE------------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred CCCceECcccc-CCCCCceEEEEECCCceEEEecc------------ceEEEECCCCCCceEc
Confidence 46899876532 112223444445 3567787742 2355554455689987
No 122
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=84.74 E-value=1e+02 Score=37.30 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=15.3
Q ss_pred CceeeeEEEEeCCCc--eeEEee
Q 005655 268 GIIHSDLWSLDPRTW--EWSKVK 288 (685)
Q Consensus 268 ~~~~~dv~~yd~~t~--~W~~~~ 288 (685)
..+.+.+..+|+.|. .|..-.
T Consensus 410 n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 410 EKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ccccceEEEEeCCCCceEEEecc
Confidence 356788999998765 687654
No 123
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.16 E-value=57 Score=34.03 Aligned_cols=187 Identities=15% Similarity=0.104 Sum_probs=102.2
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
-+-++++++..-+..+-+. -.+-.+.-.++++ +.||..|-.. .+. ++|+.++.-+..+. |.+
T Consensus 125 aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~~G~lWFt~q~G---------~yG---rLdPa~~~i~vfpa---PqG 188 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPL-EHADANLETAVFDPWGNLWFTGQIG---------AYG---RLDPARNVISVFPA---PQG 188 (353)
T ss_pred eeEEecCcccceEEeeccc-ccCCCcccceeeCCCccEEEeeccc---------cce---ecCcccCceeeecc---CCC
Confidence 5778999888777665431 1122233333443 6777766421 122 67887776555443 222
Q ss_pred CccceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcc-ceeEE-E-eCCEEEEEeccc
Q 005655 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS-GFQFF-V-YQDEVFLYGGYS 255 (685)
Q Consensus 180 Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs-~~s~~-~-~~~~Iyv~GG~~ 255 (685)
-.-.++|+ -++.+|+--= +-|-+-..|+.+..=..++.+ .+.. +.--+ + -.+.+++.--.
T Consensus 189 ~gpyGi~atpdGsvwyasl---------agnaiaridp~~~~aev~p~P------~~~~~gsRriwsdpig~~wittwg- 252 (353)
T COG4257 189 GGPYGICATPDGSVWYASL---------AGNAIARIDPFAGHAEVVPQP------NALKAGSRRIWSDPIGRAWITTWG- 252 (353)
T ss_pred CCCcceEECCCCcEEEEec---------cccceEEcccccCCcceecCC------CcccccccccccCccCcEEEeccC-
Confidence 22233433 3666666411 124456667776644444432 2211 11111 1 14556665221
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEE
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
...+++|||.+..|..-+-.+.. +| ..+|-+- .+++++--- -.+.|.
T Consensus 253 ---------------~g~l~rfdPs~~sW~eypLPgs~--ar-pys~rVD~~grVW~sea--------------~agai~ 300 (353)
T COG4257 253 ---------------TGSLHRFDPSVTSWIEYPLPGSK--AR-PYSMRVDRHGRVWLSEA--------------DAGAIG 300 (353)
T ss_pred ---------------CceeeEeCcccccceeeeCCCCC--CC-cceeeeccCCcEEeecc--------------ccCcee
Confidence 23488999999999988654432 23 3344443 566665321 146699
Q ss_pred EEECCCCcEEEEEecCCC
Q 005655 335 GFQLDNHRWYPLELRKEK 352 (685)
Q Consensus 335 ~yd~~t~~W~~l~~~~~~ 352 (685)
+||+++.+++.++...+.
T Consensus 301 rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 301 RFDPETARFTVLPIPRPN 318 (353)
T ss_pred ecCcccceEEEecCCCCC
Confidence 999999999999885443
No 124
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.02 E-value=75 Score=35.24 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=60.3
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCC--CCC-cceeEEEEECCEEEEEcCccCC
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS--PPP-RSAHQAVSWKNYLYIFGGEFTS 146 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~--P~~-R~~ha~v~~~~~iyvfGG~~~s 146 (685)
.-..+.+.|...++.+++|-. + -+..-+=.-.+|.....+.. +.. ....+++..++.+|++|-.
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~---G-------~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~--- 155 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTR---Q-------TLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP--- 155 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCC---C-------EEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc---
Confidence 334455533224688888862 1 22222223458997543211 111 1234455557788888532
Q ss_pred CCCccccccCeEEEEECCCCcEEEcccCC-CCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
.-+++=.-.-.+|+.+.... +|.. .+..+.+ .+.+|++|.. ..+++-+-.-.+|+.+
T Consensus 156 ---------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~----------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 156 ---------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE----------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred ---------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc----------ceEEEECCCCCCceEc
Confidence 11222222346899886521 1222 3334444 4567777742 2344444445689987
No 125
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=83.45 E-value=70 Score=35.67 Aligned_cols=173 Identities=14% Similarity=0.212 Sum_probs=89.5
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..|++.++...++-.+++-. +|.....+-| ++.|+|..-+..... -...+|..+........+..-
T Consensus 106 taDly~v~~e~Ge~kRiTyf----Gr~fT~VaG~~~dg~iiV~TD~~tPF~---q~~~lYkv~~dg~~~e~LnlG----- 173 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYF----GRRFTRVAGWIPDGEIIVSTDFHTPFS---QWTELYKVNVDGIKTEPLNLG----- 173 (668)
T ss_pred cccEEEEeCCCCcEEEEEEe----ccccceeeccCCCCCEEEEeccCCCcc---cceeeeEEccCCceeeeccCC-----
Confidence 47899999999998888873 3444444444 678888776654321 012333333333222222221
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEe
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLF 312 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvf 312 (685)
-.+..+..+.++++|-.... ..-=..-+|..-..+|.=.....+++++-.+.. .-.+-+++++++|.+
T Consensus 174 -----pathiv~~dg~ivigRntyd--LP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~-----~vS~PmIV~~RvYFl 241 (668)
T COG4946 174 -----PATHIVIKDGIIVIGRNTYD--LPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDG-----NVSSPMIVGERVYFL 241 (668)
T ss_pred -----ceeeEEEeCCEEEEccCccc--CcccccccCCccceEEEEecCCcceeeeeecCC-----CcCCceEEcceEEEE
Confidence 12333445557777754332 110011122333456666666666776654311 011224456777665
Q ss_pred cceecc------c---------------------CCccccccccCCcEEEEECCCCcEEEEEecCC
Q 005655 313 GGVVDM------E---------------------MKGDVIMSLFLNELYGFQLDNHRWYPLELRKE 351 (685)
Q Consensus 313 GG~~~~------~---------------------~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~ 351 (685)
--..+. + ..+..+.-..-.++|.|||++.+-.+|....|
T Consensus 242 sD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lp 307 (668)
T COG4946 242 SDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLP 307 (668)
T ss_pred ecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCc
Confidence 322111 0 01112222334589999999999999887533
No 126
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.27 E-value=42 Score=36.81 Aligned_cols=211 Identities=15% Similarity=0.206 Sum_probs=96.0
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEE-EEcCccCCCCCccccccCeEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY-IFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy-vfGG~~~s~~~~~~~~~~dv~ 159 (685)
++.-+||+|. +++. ..+|.+|+.+.+-.+|+.... ....+..++.-+..|| +-.| ..++
T Consensus 46 dG~kllF~s~-~dg~-----~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~-------------~~l~ 105 (386)
T PF14583_consen 46 DGRKLLFASD-FDGN-----RNLYLLDLATGEITQLTDGPG-DNTFGGFLSPDDRALYYVKNG-------------RSLR 105 (386)
T ss_dssp TS-EEEEEE--TTSS------EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETT-------------TEEE
T ss_pred CCCEEEEEec-cCCC-----cceEEEEcccCEEEECccCCC-CCccceEEecCCCeEEEEECC-------------CeEE
Confidence 5777788775 3443 478999999999999987531 2222222222245554 3333 4689
Q ss_pred EEECCCCcEEEcccCCCCCCCccceEEEEC--CEEEEEccccCC------CC---------ceeeeceEEEEEcCCCceE
Q 005655 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYK--HKIIVFGGFYDT------LR---------EVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~--~~lyv~GG~~~~------~~---------~~~~~~dv~~yD~~t~~W~ 222 (685)
.+|+.|.+=+.|-. .|..-.+....+.+ ... ++ |.... .. ..+..+.|...|+.+.+.+
T Consensus 106 ~vdL~T~e~~~vy~--~p~~~~g~gt~v~n~d~t~-~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 106 RVDLDTLEERVVYE--VPDDWKGYGTWVANSDCTK-LV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp EEETTT--EEEEEE----TTEEEEEEEEE-TTSSE-EE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred EEECCcCcEEEEEE--CCcccccccceeeCCCccE-EE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 99999887655554 34444443333332 222 11 11100 00 0224567888899998887
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEE
Q 005655 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (685)
Q Consensus 223 ~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~ 302 (685)
.|-.. ..-.....+.+.+..+++|.--..- ..+-.-||..+........+... .+.-.+||=.
T Consensus 182 ~v~~~-----~~wlgH~~fsP~dp~li~fCHEGpw----------~~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gHEf 244 (386)
T PF14583_consen 182 VVFED-----TDWLGHVQFSPTDPTLIMFCHEGPW----------DLVDQRIWTINTDGSNVKKVHRR--MEGESVGHEF 244 (386)
T ss_dssp EEEEE-----SS-EEEEEEETTEEEEEEEEE-S-T----------TTSS-SEEEEETTS---EESS-----TTEEEEEEE
T ss_pred EEEec-----CccccCcccCCCCCCEEEEeccCCc----------ceeceEEEEEEcCCCcceeeecC--CCCccccccc
Confidence 77554 2222333445557778887432211 12334699999887776666542 2333344444
Q ss_pred EEECCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
-+.+|..+.+=+..... . -.-|..||+.|.
T Consensus 245 w~~DG~~i~y~~~~~~~-------~--~~~i~~~d~~t~ 274 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGG-------Q--DFWIAGYDPDTG 274 (386)
T ss_dssp E-TTSS-EEEEEEETTT-----------EEEEEE-TTT-
T ss_pred ccCCCCEEEEEeecCCC-------C--ceEEEeeCCCCC
Confidence 44455544443332210 0 122777888765
No 127
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=82.06 E-value=31 Score=39.23 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=44.9
Q ss_pred CCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecc
Q 005655 177 PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254 (685)
Q Consensus 177 P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~ 254 (685)
-.|+.|.-|++. +--||+.|- -.+||+||+....|-..-... .+-..+.-+---++|+.+||-
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs----------g~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS----------GSEVYRLNLEQGRFLNPFETD-----SGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred ecCcCCccccccCCCccEEEeec----------CcceEEEEccccccccccccc-----cccceeeeecCccceEEeccc
Confidence 445666666654 234665543 368999999999885432221 111111111125678999987
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
.+. |.++||.+..
T Consensus 196 ~g~----------------VEfwDpR~ks 208 (703)
T KOG2321|consen 196 DGV----------------VEFWDPRDKS 208 (703)
T ss_pred Cce----------------EEEecchhhh
Confidence 766 7788876543
No 128
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=81.78 E-value=84 Score=34.22 Aligned_cols=226 Identities=12% Similarity=0.070 Sum_probs=115.1
Q ss_pred EeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcce-----eEEEEE--CCEEEEEcCccCCC
Q 005655 76 INPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSA-----HQAVSW--KNYLYIFGGEFTSP 147 (685)
Q Consensus 76 ~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~-----ha~v~~--~~~iyvfGG~~~s~ 147 (685)
+.|. +..|||.-..+..+.+..-.+.|-+||+.+.+-. .++.+ |.||.. +.++.. +..|||+-=
T Consensus 53 ~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~n~----- 124 (352)
T TIGR02658 53 VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFYQF----- 124 (352)
T ss_pred ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC--CCchhhccCccceEEECCCCCEEEEecC-----
Confidence 4543 4788888875544444444567899999998765 55554 344522 222222 346777621
Q ss_pred CCccccccCeEEEEECCCCcEEE-cccCCC----CCCCccceEEEECCEEEE----------------Ecc------ccC
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQ-LNLKGC----PSPRSGHRMVLYKHKIIV----------------FGG------FYD 200 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~-~~~~g~----P~~Rsgh~~v~~~~~lyv----------------~GG------~~~ 200 (685)
..-+.+-++|+.++.-.. ++..++ |.+...+.+.+.++.+.. |-+ ...
T Consensus 125 -----~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 125 -----SPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred -----CCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 123678899998887544 433222 444444433344332222 333 111
Q ss_pred -----CCC--ceeeeceEEEEEcCC------CceEEeccCCC--CCCCCCccceeEEEeCCEEEEEe--cccCCCCcccC
Q 005655 201 -----TLR--EVRYYNDLYVFDLDQ------FKWQEIKPRFG--SMWPSPRSGFQFFVYQDEVFLYG--GYSKEVSTDKN 263 (685)
Q Consensus 201 -----~~~--~~~~~~dv~~yD~~t------~~W~~v~~~~~--~~~P~~Rs~~s~~~~~~~Iyv~G--G~~~~~~~~~~ 263 (685)
.+. -..+...|+..|+.. ..|..+..... +-.|...-..++..-++.+||.. |-.+.
T Consensus 200 ~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t------ 273 (352)
T TIGR02658 200 AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT------ 273 (352)
T ss_pred ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc------
Confidence 010 011346777777432 33665544311 11122211222222378888842 22111
Q ss_pred CCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C-C-eEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K-K-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~-~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
....-+.+|++|+.+.+=...-. ..+.-+++++- + . .+|+.-+. .++|.++|+.+
T Consensus 274 ---hk~~~~~V~ViD~~t~kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~--------------s~~VsViD~~t 331 (352)
T TIGR02658 274 ---HKTASRFLFVVDAKTGKRLRKIE-----LGHEIDSINVSQDAKPLLYALSTG--------------DKTLYIFDAET 331 (352)
T ss_pred ---ccCCCCEEEEEECCCCeEEEEEe-----CCCceeeEEECCCCCeEEEEeCCC--------------CCcEEEEECcC
Confidence 01233579999987765444433 33444555555 3 3 56655543 46699999887
Q ss_pred Cc
Q 005655 341 HR 342 (685)
Q Consensus 341 ~~ 342 (685)
.+
T Consensus 332 ~k 333 (352)
T TIGR02658 332 GK 333 (352)
T ss_pred Ce
Confidence 63
No 129
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=81.75 E-value=26 Score=31.89 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=58.1
Q ss_pred EECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccC-CCCCCCccceEEEECCEEEEEccccCCCCceeeece
Q 005655 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210 (685)
Q Consensus 132 ~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~-g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~d 210 (685)
.++|.||-..-. .. ...+-+..||+.+.+|+.+..+ ..........++.++|+|-++.-..... ...-+
T Consensus 3 cinGvly~~a~~-~~------~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~ 72 (129)
T PF08268_consen 3 CINGVLYWLAWS-ED------SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSID 72 (129)
T ss_pred EECcEEEeEEEE-CC------CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEE
Confidence 457777766654 11 1347799999999999988763 1234556677788899998875543221 12458
Q ss_pred EEEE-EcCCCceEEeccC
Q 005655 211 LYVF-DLDQFKWQEIKPR 227 (685)
Q Consensus 211 v~~y-D~~t~~W~~v~~~ 227 (685)
+|++ |.....|++....
T Consensus 73 iWvLeD~~k~~Wsk~~~~ 90 (129)
T PF08268_consen 73 IWVLEDYEKQEWSKKHIV 90 (129)
T ss_pred EEEeeccccceEEEEEEE
Confidence 8888 5677889987653
No 130
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=81.70 E-value=24 Score=39.35 Aligned_cols=51 Identities=22% Similarity=0.377 Sum_probs=35.9
Q ss_pred eEEEEEcCC----CceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 210 DLYVFDLDQ----FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 210 dv~~yD~~t----~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
.|.+||... ..|..... .|-.|-+++..+..|++-=|+++. ++.||.....
T Consensus 188 ~VtlwDv~g~sp~~~~~~~Hs-------AP~~gicfspsne~l~vsVG~Dkk----------------i~~yD~~s~~ 242 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHS-------APCRGICFSPSNEALLVSVGYDKK----------------INIYDIRSQA 242 (673)
T ss_pred eEEEEeccCCCcccchhhhcc-------CCcCcceecCCccceEEEecccce----------------EEEeeccccc
Confidence 466666653 33554443 355677888889999999999877 8899987543
No 131
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.23 E-value=77 Score=33.44 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=58.2
Q ss_pred eeccEEEEEcCCCcEEEe--cCCCCCCCcceeEE-EEE---CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcc
Q 005655 99 VYGDLYRYDVEKQEWKVI--SSPNSPPPRSAHQA-VSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172 (685)
Q Consensus 99 ~~ndv~~yd~~~~~W~~l--~s~~~P~~R~~ha~-v~~---~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~ 172 (685)
-|+.|+.||+.+++-+.+ .+...|..-++-.+ ..+ ++.||+.-+- + +.---+|.+|..++.=+.+.
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~D-G-------h~nLGvy~ldr~~g~~~~L~ 147 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARAD-G-------HANLGVYSLDRRTGKAEKLS 147 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecC-C-------cceeeeEEEcccCCceeecc
Confidence 467899999999873322 12222222222211 122 4677776432 1 11235999999999988887
Q ss_pred cCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 173 LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 173 ~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
.. |++ -.+.+.+..+|-+ ..- ..-.+.+.+||+.+++|
T Consensus 148 ~~--ps~---KG~~~~D~a~F~i---~~~---~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 148 SN--PSL---KGTLVHDYACFGI---NNF---HKGVSGIHCLDLISGKW 185 (339)
T ss_pred CC--CCc---CceEeeeeEEEec---ccc---ccCCceEEEEEccCCeE
Confidence 63 333 2233333333322 111 11267899999999999
No 132
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.14 E-value=30 Score=38.44 Aligned_cols=129 Identities=16% Similarity=0.226 Sum_probs=66.0
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC-cEEEecCCCCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccCe
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~-~W~~l~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
+++|++.||+ +| .+-.||+.+. .|.. ..+.-.|- -.+++++ ..|...|| |.
T Consensus 165 ~~hivvtGsY--Dg-------~vrl~DtR~~~~~v~--elnhg~pV--e~vl~lpsgs~iasAgG-------------n~ 218 (487)
T KOG0310|consen 165 NDHIVVTGSY--DG-------KVRLWDTRSLTSRVV--ELNHGCPV--ESVLALPSGSLIASAGG-------------NS 218 (487)
T ss_pred CCeEEEecCC--Cc-------eEEEEEeccCCceeE--EecCCCce--eeEEEcCCCCEEEEcCC-------------Ce
Confidence 3778888883 44 4666787776 4542 22211222 1234442 45555566 45
Q ss_pred EEEEECCCCcEEEcccCCCCCCCc-cceEEE----E-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC
Q 005655 158 FWMLDLKTNQWEQLNLKGCPSPRS-GHRMVL----Y-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (685)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs-gh~~v~----~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (685)
+-++|+.++.= ++..+. +|-.+. . ++.-.+-||.+ ..|-+||+.+ |..+....
T Consensus 219 vkVWDl~~G~q-------ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD---------~~VKVfd~t~--~Kvv~s~~--- 277 (487)
T KOG0310|consen 219 VKVWDLTTGGQ-------LLTSMFNHNKTVTCLRLASDSTRLLSGSLD---------RHVKVFDTTN--YKVVHSWK--- 277 (487)
T ss_pred EEEEEecCCce-------ehhhhhcccceEEEEEeecCCceEeecccc---------cceEEEEccc--eEEEEeee---
Confidence 66677654431 222333 222211 1 34555666754 3577888443 45554442
Q ss_pred CCCCccceeEEEeCCEEEEEecccCC
Q 005655 232 WPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 232 ~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
.|.|....++.. +++-.++|..++.
T Consensus 278 ~~~pvLsiavs~-dd~t~viGmsnGl 302 (487)
T KOG0310|consen 278 YPGPVLSIAVSP-DDQTVVIGMSNGL 302 (487)
T ss_pred cccceeeEEecC-CCceEEEecccce
Confidence 244544444333 6777778877654
No 133
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=78.22 E-value=32 Score=39.09 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=46.7
Q ss_pred CCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccC
Q 005655 123 PPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYD 200 (685)
Q Consensus 123 ~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~ 200 (685)
.|+.+..++.. .-.||+.|- -++||+||+..+.|-..-. .-.+-.++..+.--+.|+.+||-.
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------------g~evYRlNLEqGrfL~P~~--~~~~~lN~v~in~~hgLla~Gt~~- 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------------GSEVYRLNLEQGRFLNPFE--TDSGELNVVSINEEHGLLACGTED- 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec------------CcceEEEEccccccccccc--cccccceeeeecCccceEEecccC-
Confidence 45566666655 345776653 2689999999999854211 122333333333356799999953
Q ss_pred CCCceeeeceEEEEEcCCCc
Q 005655 201 TLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~ 220 (685)
..|.++|+.+..
T Consensus 197 --------g~VEfwDpR~ks 208 (703)
T KOG2321|consen 197 --------GVVEFWDPRDKS 208 (703)
T ss_pred --------ceEEEecchhhh
Confidence 468888887643
No 134
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=78.01 E-value=1.1e+02 Score=33.15 Aligned_cols=108 Identities=13% Similarity=0.270 Sum_probs=60.3
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEE--EECCEEEEEcCccCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV--SWKNYLYIFGGEFTSPN 148 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v--~~~~~iyvfGG~~~s~~ 148 (685)
-|++...| ++.+.+.||. . +--|++++.++.|-..-.. -.-+-+++ .+++.+++.||..+
T Consensus 67 vFavsl~P--~~~l~aTGGg----D-----D~AflW~~~~ge~~~eltg----HKDSVt~~~FshdgtlLATGdmsG--- 128 (399)
T KOG0296|consen 67 VFAVSLHP--NNNLVATGGG----D-----DLAFLWDISTGEFAGELTG----HKDSVTCCSFSHDGTLLATGDMSG--- 128 (399)
T ss_pred eEEEEeCC--CCceEEecCC----C-----ceEEEEEccCCcceeEecC----CCCceEEEEEccCceEEEecCCCc---
Confidence 35566677 5889999994 2 2457788888887633221 12222333 34688888898754
Q ss_pred CccccccCeEEEEECCCC--cEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 149 QERFHHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~--~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.+.+|...++ .|.-...- ....-..| ...|+++|--+ ..+|.|.+.+.
T Consensus 129 --------~v~v~~~stg~~~~~~~~e~------~dieWl~WHp~a~illAG~~D---------GsvWmw~ip~~ 180 (399)
T KOG0296|consen 129 --------KVLVFKVSTGGEQWKLDQEV------EDIEWLKWHPRAHILLAGSTD---------GSVWMWQIPSQ 180 (399)
T ss_pred --------cEEEEEcccCceEEEeeccc------CceEEEEecccccEEEeecCC---------CcEEEEECCCc
Confidence 3555555444 46544210 01001111 23455665432 46899988776
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=76.95 E-value=48 Score=36.66 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=19.4
Q ss_pred HhhHHHHHHHHHHhhhhHHHHHHHH
Q 005655 632 KDGFDLAEARYRELKPILDELAVLE 656 (685)
Q Consensus 632 ~~~f~la~~r~~e~~~~l~~~~~le 656 (685)
|..|+.+.+-|-+.+..|+||.+-+
T Consensus 445 k~~~q~~~~~~k~~~~~~~~i~ee~ 469 (476)
T KOG0646|consen 445 KRSLQALTHAYKELRNMLEEIYEEH 469 (476)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5678888888999998888776533
No 136
>PRK10115 protease 2; Provisional
Probab=76.77 E-value=1.7e+02 Score=34.91 Aligned_cols=194 Identities=10% Similarity=0.067 Sum_probs=95.8
Q ss_pred ccEEEEEcCCCcE--EEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEEC--CCCcEEEcccCC
Q 005655 101 GDLYRYDVEKQEW--KVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDL--KTNQWEQLNLKG 175 (685)
Q Consensus 101 ndv~~yd~~~~~W--~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~--~t~~W~~~~~~g 175 (685)
.+||++++.+..- ..+-.. +........... ++...++..... ..+.++.|+. .+..|..+.+
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e--~~~~~~~~~~~s~d~~~l~i~~~~~--------~~~~~~l~~~~~~~~~~~~~~~-- 266 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEE--KDDTFYVSLHKTTSKHYVVIHLASA--------TTSEVLLLDAELADAEPFVFLP-- 266 (686)
T ss_pred CEEEEEECCCChhHCeEEEee--CCCCEEEEEEEcCCCCEEEEEEECC--------ccccEEEEECcCCCCCceEEEE--
Confidence 5788888887732 223221 112222222222 333223333222 1356888884 3445443332
Q ss_pred CCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcC-CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecc
Q 005655 176 CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254 (685)
Q Consensus 176 ~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~ 254 (685)
.+.. .......+++.+|+.--... ....|..+++. ...|+.+-+. ...+.--.+.+..+.|++..-.
T Consensus 267 ~~~~-~~~~~~~~~~~ly~~tn~~~------~~~~l~~~~~~~~~~~~~l~~~-----~~~~~i~~~~~~~~~l~~~~~~ 334 (686)
T PRK10115 267 RRKD-HEYSLDHYQHRFYLRSNRHG------KNFGLYRTRVRDEQQWEELIPP-----RENIMLEGFTLFTDWLVVEERQ 334 (686)
T ss_pred CCCC-CEEEEEeCCCEEEEEEcCCC------CCceEEEecCCCcccCeEEECC-----CCCCEEEEEEEECCEEEEEEEe
Confidence 1211 11233355788888754321 12346666776 5789887654 1122222344457777777543
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE---EC-CeEEE-ecceecccCCcccccccc
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV---HK-KRALL-FGGVVDMEMKGDVIMSLF 329 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~---~~-~~iyv-fGG~~~~~~~~~~~~~~~ 329 (685)
.+ ...++++++.+.....+.- +.+.....+.. .+ +.+++ +.+. ..
T Consensus 335 ~g--------------~~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ss~------------~~ 384 (686)
T PRK10115 335 RG--------------LTSLRQINRKTREVIGIAF----DDPAYVTWIAYNPEPETSRLRYGYSSM------------TT 384 (686)
T ss_pred CC--------------EEEEEEEcCCCCceEEecC----CCCceEeeecccCCCCCceEEEEEecC------------CC
Confidence 32 2347788876555554431 12222211111 11 23322 2222 22
Q ss_pred CCcEEEEECCCCcEEEEEe
Q 005655 330 LNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 330 ~ndl~~yd~~t~~W~~l~~ 348 (685)
-.++|.||+.+..|..+..
T Consensus 385 P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 385 PDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred CCEEEEEECCCCcEEEEEe
Confidence 5679999999999888775
No 137
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=76.45 E-value=1.7 Score=43.99 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=11.8
Q ss_pred CCCccceEEEECCEEEEEccc
Q 005655 178 SPRSGHRMVLYKHKIIVFGGF 198 (685)
Q Consensus 178 ~~Rsgh~~v~~~~~lyv~GG~ 198 (685)
-|......+-....++-+||.
T Consensus 121 Cpl~da~C~EC~R~vw~hGGr 141 (314)
T PF06524_consen 121 CPLQDAVCIECERGVWDHGGR 141 (314)
T ss_pred CcCCCcEeeeeecccccCCCe
Confidence 344444455556666667764
No 138
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=76.33 E-value=1.2e+02 Score=32.90 Aligned_cols=188 Identities=15% Similarity=0.197 Sum_probs=93.9
Q ss_pred cEEEEEcCCCc--EEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCC--cEEEcccCCCC
Q 005655 102 DLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP 177 (685)
Q Consensus 102 dv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g~P 177 (685)
.++.+|+.+.. |+...... ....+......+++||+-... ..+++||..++ .|..-... .
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~--~~~~~~~~~~~~G~i~~g~~~------------g~~y~ld~~~G~~~W~~~~~~--~ 142 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGA--VAQLSGPILGSDGKIYVGSWD------------GKLYALDASTGTLVWSRNVGG--S 142 (370)
T ss_pred cEEEEeCCCCcEEecccCcCc--ceeccCceEEeCCeEEEeccc------------ceEEEEECCCCcEEEEEecCC--C
Confidence 78999999886 97543320 011111122226776654331 25889999655 58876552 1
Q ss_pred CCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC--CceEEeccCCCCCCCCCccceeEEEeCCEEEEEeccc
Q 005655 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYS 255 (685)
Q Consensus 178 ~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t--~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~ 255 (685)
++..-..++.++.+|+... .+.++++|..+ ..|..-...+ . ..+.....++..+.+|+- ...
T Consensus 143 -~~~~~~~v~~~~~v~~~s~----------~g~~~al~~~tG~~~W~~~~~~~---~-~~~~~~~~~~~~~~vy~~-~~~ 206 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGTD----------DGHLYALNADTGTLKWTYETPAP---L-SLSIYGSPAIASGTVYVG-SDG 206 (370)
T ss_pred -eEEecCcEEcCcEEEEecC----------CCeEEEEEccCCcEEEEEecCCc---c-ccccccCceeecceEEEe-cCC
Confidence 3444444445555655431 35678888775 4577544331 0 111111122334445443 221
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCC--ceeEEeecCCCCCCCccee--EEEEECCeEEEecceecccCCccccccccCC
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGF--SMCVHKKRALLFGGVVDMEMKGDVIMSLFLN 331 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~~~~~g~~P~~R~g~--s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~n 331 (685)
.. ..++.+|+.+ ..|..-... +..+..- ...+..+.||+-||+.. .....
T Consensus 207 ~~--------------~~~~a~~~~~G~~~w~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~~~~---------~~~~g 260 (370)
T COG1520 207 YD--------------GILYALNAEDGTLKWSQKVSQ---TIGRTAISTTPAVDGGPVYVDGGVYA---------GSYGG 260 (370)
T ss_pred Cc--------------ceEEEEEccCCcEeeeeeeec---ccCcccccccccccCceEEECCcEEE---------EecCC
Confidence 01 1488888854 467753221 1111111 12444666666666422 11234
Q ss_pred cEEEEECCCC--cEEEEE
Q 005655 332 ELYGFQLDNH--RWYPLE 347 (685)
Q Consensus 332 dl~~yd~~t~--~W~~l~ 347 (685)
.++++|..+. .|..-.
T Consensus 261 ~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 261 KLLCLDADTGELIWSFPA 278 (370)
T ss_pred eEEEEEcCCCceEEEEec
Confidence 4888887755 676433
No 139
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=76.29 E-value=1.1e+02 Score=34.47 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=65.3
Q ss_pred CcEEEcccCCCCCCCccceEEEEC--CEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEE
Q 005655 166 NQWEQLNLKGCPSPRSGHRMVLYK--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV 243 (685)
Q Consensus 166 ~~W~~~~~~g~P~~Rsgh~~v~~~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~ 243 (685)
.+-..+.+.++-..|...+.|.|+ +.+ |.+|..+. +|.+++. ..|..-+.+.-.....+-.+-+++.
T Consensus 303 ~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DG--------SIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~ 371 (641)
T KOG0772|consen 303 SQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDG--------SIQIWDK--GSRTVRPVMKVKDAHLPGQDITSIS 371 (641)
T ss_pred hheeEEeeccCCCcccCceeeecCCCcch-hhhcccCC--------ceeeeec--CCcccccceEeeeccCCCCceeEEE
Confidence 334455555556678888888884 456 56666442 4555553 3333322221111122222333333
Q ss_pred e--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeC---CCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceec
Q 005655 244 Y--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP---RTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (685)
Q Consensus 244 ~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~---~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~ 317 (685)
+ ++.+++--|.... -.+|-++- .-..|+-+ |.+-.+.-||+- ..+|+|.|-...
T Consensus 372 FS~dg~~LlSRg~D~t--------------LKvWDLrq~kkpL~~~tgL------~t~~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDT--------------LKVWDLRQFKKPLNVRTGL------PTPFPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred eccccchhhhccCCCc--------------eeeeeccccccchhhhcCC------CccCCCCccccCCCceEEEeccccc
Confidence 3 6666666555543 11333321 12344433 333333334444 677887775543
Q ss_pred ccCCccccccccCCcEEEEECCC
Q 005655 318 MEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
.. .-...|+.||..+
T Consensus 432 ~~--------~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 432 NG--------MTAGTLFFFDRMT 446 (641)
T ss_pred CC--------CCCceEEEEeccc
Confidence 21 2234588888655
No 140
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=75.63 E-value=1.3e+02 Score=33.03 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=59.3
Q ss_pred CCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCc--cceeEE
Q 005655 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR--SGFQFF 242 (685)
Q Consensus 165 t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R--s~~s~~ 242 (685)
.+.|+.+.. . .-..--++.++|++|++.- ...++.++..- .=+++.+...+.+...+ .....+
T Consensus 189 ~~~Wt~l~~---~-~~~~~DIi~~kGkfYAvD~----------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLV 253 (373)
T PLN03215 189 GNVLKALKQ---M-GYHFSDIIVHKGQTYALDS----------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFV 253 (373)
T ss_pred CCeeeEccC---C-CceeeEEEEECCEEEEEcC----------CCeEEEEecCC-ceeeecceecccccCCcccCceeEE
Confidence 489999863 2 2234457888999999822 23566666421 12222221111001111 123355
Q ss_pred EeCCEEEEEecccCCCCccc--CC-CCCCceeeeEEEEeCCCceeEEeecCC
Q 005655 243 VYQDEVFLYGGYSKEVSTDK--NQ-SEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (685)
Q Consensus 243 ~~~~~Iyv~GG~~~~~~~~~--~~-~~~~~~~~dv~~yd~~t~~W~~~~~~g 291 (685)
...|.++++..+........ .. .......-.+|.+|....+|..+...|
T Consensus 254 Es~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 254 ECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 56788999988643210000 00 001122345778898899999998764
No 141
>PTZ00420 coronin; Provisional
Probab=74.52 E-value=1.8e+02 Score=33.95 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=45.6
Q ss_pred cEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+.+||+.+.+=. .+.. + ..-++++.. ++.+++.|+.. +.+.+||+.+..=. ........
T Consensus 149 tIrIWDl~tg~~~~~i~~---~--~~V~SlswspdG~lLat~s~D-----------~~IrIwD~Rsg~~i--~tl~gH~g 210 (568)
T PTZ00420 149 FVNIWDIENEKRAFQINM---P--KKLSSLKWNIKGNLLSGTCVG-----------KHMHIIDPRKQEIA--SSFHIHDG 210 (568)
T ss_pred eEEEEECCCCcEEEEEec---C--CcEEEEEECCCCCEEEEEecC-----------CEEEEEECCCCcEE--EEEecccC
Confidence 5778888876421 2211 1 112222222 56777766632 35889999876422 11001111
Q ss_pred CccceEEE-----ECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 180 RSGHRMVL-----YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 180 Rsgh~~v~-----~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
......+. .++..++.+|+.... ...|.+||+.+
T Consensus 211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~-----~R~VkLWDlr~ 249 (568)
T PTZ00420 211 GKNTKNIWIDGLGGDDNYILSTGFSKNN-----MREMKLWDLKN 249 (568)
T ss_pred CceeEEEEeeeEcCCCCEEEEEEcCCCC-----ccEEEEEECCC
Confidence 11111111 244566666765421 24688888874
No 142
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=74.39 E-value=1.4e+02 Score=32.74 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=57.9
Q ss_pred CCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccC---CCCCCC--ccce
Q 005655 110 KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK---GCPSPR--SGHR 184 (685)
Q Consensus 110 ~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~---g~P~~R--sgh~ 184 (685)
.+.|+.+..+ .-..-.++.++|++|++.- ...++.++..- .-.++.+. .+..++ ....
T Consensus 189 ~~~Wt~l~~~----~~~~~DIi~~kGkfYAvD~------------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~y 251 (373)
T PLN03215 189 GNVLKALKQM----GYHFSDIIVHKGQTYALDS------------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRR 251 (373)
T ss_pred CCeeeEccCC----CceeeEEEEECCEEEEEcC------------CCeEEEEecCC-ceeeecceecccccCCcccCcee
Confidence 4899988642 2335567888999999832 23466666321 11222210 000111 2234
Q ss_pred EEEECCEEEEEccccCCCCc----------eeeeceEEEEEcCCCceEEeccC
Q 005655 185 MVLYKHKIIVFGGFYDTLRE----------VRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 185 ~v~~~~~lyv~GG~~~~~~~----------~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
.|...+.|+++..+...... ....-.|+.+|....+|..+...
T Consensus 252 LVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sL 304 (373)
T PLN03215 252 FVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTL 304 (373)
T ss_pred EEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEeccc
Confidence 66678889999886432110 11223567778889999999877
No 143
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=73.88 E-value=1.4e+02 Score=32.61 Aligned_cols=192 Identities=11% Similarity=0.029 Sum_probs=91.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~ 149 (685)
|........+..+|+.+. + +.+.++|+.+.+-. .+.. ....+++++. +++.++.+.+
T Consensus 39 h~~~~~s~Dgr~~yv~~r---d-------g~vsviD~~~~~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~------ 97 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR---D-------GTVSVIDLATGKVVATIKV-----GGNPRGIAVSPDGKYVYVANY------ 97 (369)
T ss_dssp EEEEE-TT-SSEEEEEET---T-------SEEEEEETTSSSEEEEEE------SSEEEEEEE--TTTEEEEEEE------
T ss_pred eeEEEecCCCCEEEEEcC---C-------CeEEEEECCcccEEEEEec-----CCCcceEEEcCCCCEEEEEec------
Confidence 444433322467888764 2 25889999988743 3333 3333444433 4443333332
Q ss_pred ccccccCeEEEEECCCCcE-EEcccCCC----CCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 150 ERFHHYKDFWMLDLKTNQW-EQLNLKGC----PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W-~~~~~~g~----P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
.-+.+-++|..|.+= ..++..++ +.+|...-.+...+..|++--.. ...+|..|.....=..+
T Consensus 98 ----~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--------~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 98 ----EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--------TGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp ----ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--------TTEEEEEETTTSSCEEE
T ss_pred ----CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--------CCeEEEEEeccccccce
Confidence 236788999888653 33333222 22333222222355556654332 35788888765432222
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE
Q 005655 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~ 304 (685)
... ...+.-|-+....+.=|++.+.... +.+-++|..+..-..+-..|..|.+..+..+..
T Consensus 166 ~~i-----~~g~~~~D~~~dpdgry~~va~~~s--------------n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph 226 (369)
T PF02239_consen 166 TTI-----KVGRFPHDGGFDPDGRYFLVAANGS--------------NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH 226 (369)
T ss_dssp EEE-----E--TTEEEEEE-TTSSEEEEEEGGG--------------TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE
T ss_pred eee-----cccccccccccCcccceeeeccccc--------------ceeEEEeeccceEEEEeeccccccccccccccC
Confidence 232 3456666666664433334443322 357788888876665555455555544444432
Q ss_pred EC-CeEEEecce
Q 005655 305 HK-KRALLFGGV 315 (685)
Q Consensus 305 ~~-~~iyvfGG~ 315 (685)
.+ +.++..+|.
T Consensus 227 p~~g~vw~~~~~ 238 (369)
T PF02239_consen 227 PGFGPVWATSGL 238 (369)
T ss_dssp TTTEEEEEEEBS
T ss_pred CCcceEEeeccc
Confidence 22 334444443
No 144
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=73.11 E-value=1.4e+02 Score=32.15 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=84.0
Q ss_pred ccEEEEEcCCCcEEEecCCCC-C--CCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-
Q 005655 101 GDLYRYDVEKQEWKVISSPNS-P--PPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG- 175 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~-P--~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g- 175 (685)
..++.|+...+.......-.. | .|| |-+.-- +..+||+.=.++. =+||.||........+....
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPR--Hi~FHpn~k~aY~v~EL~st---------V~v~~y~~~~g~~~~lQ~i~t 235 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPR--HIVFHPNGKYAYLVNELNST---------VDVLEYNPAVGKFEELQTIDT 235 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcc--eEEEcCCCcEEEEEeccCCE---------EEEEEEcCCCceEEEeeeecc
Confidence 467888888776654433222 1 233 332222 3568888654432 46889998888887776532
Q ss_pred CCCC---CccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEc--CCCceEEeccCCCCCCCCCccceeEEEeCCE
Q 005655 176 CPSP---RSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (685)
Q Consensus 176 ~P~~---Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~ 247 (685)
+|.. -.+.+++.+ +.+||+. .+..+.+++|-+ .+.+-..+...+... ..|| .|.+...++.
T Consensus 236 lP~dF~g~~~~aaIhis~dGrFLYas---------NRg~dsI~~f~V~~~~g~L~~~~~~~teg-~~PR-~F~i~~~g~~ 304 (346)
T COG2706 236 LPEDFTGTNWAAAIHISPDGRFLYAS---------NRGHDSIAVFSVDPDGGKLELVGITPTEG-QFPR-DFNINPSGRF 304 (346)
T ss_pred CccccCCCCceeEEEECCCCCEEEEe---------cCCCCeEEEEEEcCCCCEEEEEEEeccCC-cCCc-cceeCCCCCE
Confidence 2322 222233333 5688885 234678888854 444444443332111 2355 3344444566
Q ss_pred EEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC
Q 005655 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (685)
Q Consensus 248 Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~ 290 (685)
||+.+=-+.. -.+|.-|+.+.+-+.+...
T Consensus 305 Liaa~q~sd~--------------i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 305 LIAANQKSDN--------------ITVFERDKETGRLTLLGRY 333 (346)
T ss_pred EEEEccCCCc--------------EEEEEEcCCCceEEecccc
Confidence 6665433222 2366668888888887654
No 145
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=72.50 E-value=1.5e+02 Score=32.13 Aligned_cols=144 Identities=13% Similarity=0.162 Sum_probs=78.5
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
++.+.+.||... -.+++++.++.|--.-+ ...-..-..+..+++.+++-||..+ .|.+
T Consensus 75 ~~~l~aTGGgDD-----------~AflW~~~~ge~~~elt--gHKDSVt~~~FshdgtlLATGdmsG---------~v~v 132 (399)
T KOG0296|consen 75 NNNLVATGGGDD-----------LAFLWDISTGEFAGELT--GHKDSVTCCSFSHDGTLLATGDMSG---------KVLV 132 (399)
T ss_pred CCceEEecCCCc-----------eEEEEEccCCcceeEec--CCCCceEEEEEccCceEEEecCCCc---------cEEE
Confidence 567888898643 36678888888654322 1222223344555788888888743 4555
Q ss_pred EEcCC--CceEEeccCCCCCCCCCccceeEEE-e-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 214 FDLDQ--FKWQEIKPRFGSMWPSPRSGFQFFV-Y-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 214 yD~~t--~~W~~v~~~~~~~~P~~Rs~~s~~~-~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
|...+ .+|....... ...-.. + ...|++.|-.++. +|+|.+....-.++-.
T Consensus 133 ~~~stg~~~~~~~~e~~---------dieWl~WHp~a~illAG~~DGs----------------vWmw~ip~~~~~kv~~ 187 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVE---------DIEWLKWHPRAHILLAGSTDGS----------------VWMWQIPSQALCKVMS 187 (399)
T ss_pred EEcccCceEEEeecccC---------ceEEEEecccccEEEeecCCCc----------------EEEEECCCcceeeEec
Confidence 55443 4455442221 000111 1 3457777766665 8999887754333322
Q ss_pred CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 290 ~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
| +..++-++..+-.|+-++.|=.. ..|-+||+.+.
T Consensus 188 -G--h~~~ct~G~f~pdGKr~~tgy~d--------------gti~~Wn~ktg 222 (399)
T KOG0296|consen 188 -G--HNSPCTCGEFIPDGKRILTGYDD--------------GTIIVWNPKTG 222 (399)
T ss_pred -C--CCCCcccccccCCCceEEEEecC--------------ceEEEEecCCC
Confidence 1 23333344444456655554332 34778888776
No 146
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.77 E-value=1.2e+02 Score=30.93 Aligned_cols=92 Identities=12% Similarity=0.148 Sum_probs=59.0
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.++++|..+++--+---. --..-.++.+| ..+++.|+.. ..+-.||..+++.+++.. +-.+
T Consensus 82 ~v~vwDV~TGkv~Rr~rg----H~aqVNtV~fNeesSVv~SgsfD-----------~s~r~wDCRS~s~ePiQi--ldea 144 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRG----HLAQVNTVRFNEESSVVASGSFD-----------SSVRLWDCRSRSFEPIQI--LDEA 144 (307)
T ss_pred eEEEEEcccCeeeeeccc----ccceeeEEEecCcceEEEecccc-----------ceeEEEEcccCCCCccch--hhhh
Confidence 578889888743211000 00111234444 3455555543 357789999999988877 6788
Q ss_pred CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 180 Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
+-+-.++.+.+..+|-|..++ .+-.||+...
T Consensus 145 ~D~V~Si~v~~heIvaGS~DG---------tvRtydiR~G 175 (307)
T KOG0316|consen 145 KDGVSSIDVAEHEIVAGSVDG---------TVRTYDIRKG 175 (307)
T ss_pred cCceeEEEecccEEEeeccCC---------cEEEEEeecc
Confidence 888889999999988877654 3567777544
No 147
>smart00284 OLF Olfactomedin-like domains.
Probab=71.66 E-value=1.3e+02 Score=31.17 Aligned_cols=165 Identities=13% Similarity=0.145 Sum_probs=88.7
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEEC----CCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeec
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDL----KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYN 209 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~----~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~ 209 (685)
.+++|++.|.... .+.++.|.. ....+...-. +|.+-.|.+.|+++|.||..-.. .+
T Consensus 34 ~~~~wv~~~~~~~--------~~~v~ey~~~~~f~~~~~~~~~~--Lp~~~~GtG~VVYngslYY~~~~---------s~ 94 (255)
T smart00284 34 KSLYWYMPLNTRV--------LRSVREYSSMSDFQMGKNPTDHP--LPHAGQGTGVVVYNGSLYFNKFN---------SH 94 (255)
T ss_pred CceEEEEccccCC--------CcEEEEecCHHHHhccCCceEEE--CCCccccccEEEECceEEEEecC---------Cc
Confidence 3678887664311 133444432 2233322222 57778888899999999986442 46
Q ss_pred eEEEEEcCCCceEEeccCCC----CCCCCCccc---eeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 210 DLYVFDLDQFKWQEIKPRFG----SMWPSPRSG---FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~----~~~P~~Rs~---~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
.|..||+.+.+-......|. ...|-...+ .-+++-.+.|+|+=..... .+.+. +-.+||.+.
T Consensus 95 ~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~---------~g~iv--vSkLnp~tL 163 (255)
T smart00284 95 DICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN---------AGKIV--ISKLNPATL 163 (255)
T ss_pred cEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC---------CCCEE--EEeeCcccc
Confidence 79999999988764444421 122222222 2334456777766222111 01111 345676654
Q ss_pred ----eeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 283 ----EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 283 ----~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
+|..- .| .+....+.++-|.||++-.... .-..-.|+||+.+++=.
T Consensus 164 ~ve~tW~T~-----~~-k~sa~naFmvCGvLY~~~s~~~----------~~~~I~yayDt~t~~~~ 213 (255)
T smart00284 164 TIENTWITT-----YN-KRSASNAFMICGILYVTRSLGS----------KGEKVFYAYDTNTGKEG 213 (255)
T ss_pred eEEEEEEcC-----CC-cccccccEEEeeEEEEEccCCC----------CCcEEEEEEECCCCccc
Confidence 45541 12 2223345566788888853221 11233789998876533
No 148
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=70.57 E-value=2.9e+02 Score=34.81 Aligned_cols=209 Identities=11% Similarity=0.028 Sum_probs=104.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCC--------CC--cceeEEEEE--CCEEEEEcCccCCCC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP--------PP--RSAHQAVSW--KNYLYIFGGEFTSPN 148 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P--------~~--R~~ha~v~~--~~~iyvfGG~~~s~~ 148 (685)
++.|||.-= ..+.+.+||+....-..+...... .. ..-+.+++. ++.|||.-..+
T Consensus 579 ~g~lyVaDs---------~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n---- 645 (1057)
T PLN02919 579 NNRLFISDS---------NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN---- 645 (1057)
T ss_pred CCeEEEEEC---------CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC----
Confidence 467777542 124688888875543333321100 00 112455554 46788875431
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCC-------------CCccceEEEE--CCEEEEEccccCCCCceeeeceEEE
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-------------PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-------------~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
+.+.++|+.++.=+.+...+... -..-+.+++- ++.|||.... .+.|++
T Consensus 646 -------~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~---------~~~I~v 709 (1057)
T PLN02919 646 -------HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG---------QHQIWE 709 (1057)
T ss_pred -------ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC---------CCeEEE
Confidence 45788898887665554322100 0111233333 5688876432 357899
Q ss_pred EEcCCCceEEeccCC-----CCCCC---CCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 214 FDLDQFKWQEIKPRF-----GSMWP---SPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 214 yD~~t~~W~~v~~~~-----~~~~P---~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
||+.+.....+.... .+..+ ....-+++++. ++.|||....+. .+.+||+.+..
T Consensus 710 ~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~----------------~Irv~D~~tg~ 773 (1057)
T PLN02919 710 YNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS----------------SIRALDLKTGG 773 (1057)
T ss_pred EECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC----------------eEEEEECCCCc
Confidence 998877655433210 00000 00111223333 456888765543 37888877654
Q ss_pred eEEeecCC-CCCC--------------Ccc--eeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 284 WSKVKKIG-MPPG--------------PRA--GFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 284 W~~~~~~g-~~P~--------------~R~--g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
...+.... ..+. .+. -.++++. ++.+||.... .+.|.+||+.++....
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~--------------N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY--------------NHKIKKLDPATKRVTT 839 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC--------------CCEEEEEECCCCeEEE
Confidence 33221100 0000 000 1233333 5678777543 3569999999888776
Q ss_pred EEe
Q 005655 346 LEL 348 (685)
Q Consensus 346 l~~ 348 (685)
+..
T Consensus 840 iaG 842 (1057)
T PLN02919 840 LAG 842 (1057)
T ss_pred Eec
Confidence 664
No 149
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=69.74 E-value=1.3e+02 Score=32.41 Aligned_cols=109 Identities=17% Similarity=0.303 Sum_probs=58.4
Q ss_pred EEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCccee-------EEEEECCEEEEEcCccC
Q 005655 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAH-------QAVSWKNYLYIFGGEFT 145 (685)
Q Consensus 74 ~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~h-------a~v~~~~~iyvfGG~~~ 145 (685)
+++.|. +..+|+..=.+..+.+.....-|-.||+.+-+-. .+..| |.+|... ++..-+..+||+-
T Consensus 41 ~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP--~k~R~~~~~~~~~~~ls~dgk~~~V~N---- 113 (342)
T PF06433_consen 41 VALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP--PKPRAQVVPYKNMFALSADGKFLYVQN---- 113 (342)
T ss_dssp EEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET--TS-B--BS--GGGEEE-TTSSEEEEEE----
T ss_pred eeECCC-CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC--CcchheecccccceEEccCCcEEEEEc----
Confidence 444553 4778877766655555556667889999988433 12111 1234421 1111245677752
Q ss_pred CCCCccccccCeEEEEECCCCcEE-EcccCCC----CCCCccceEEEECCEEEEE
Q 005655 146 SPNQERFHHYKDFWMLDLKTNQWE-QLNLKGC----PSPRSGHRMVLYKHKIIVF 195 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~~t~~W~-~~~~~g~----P~~Rsgh~~v~~~~~lyv~ 195 (685)
+..-.+|-+.|+..++.. .++..|+ |.+-.++.+.+-++.|..+
T Consensus 114 ------~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 114 ------FTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTV 162 (342)
T ss_dssp ------ESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEE
T ss_pred ------cCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEE
Confidence 234568889999988764 3444333 4443345555555554444
No 150
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=69.58 E-value=2e+02 Score=32.65 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=19.3
Q ss_pred eeeecccccccCCCCccEEeccCChh
Q 005655 480 ITLDDLYSLNLSKLDEWKCIIPASES 505 (685)
Q Consensus 480 ~tl~D~y~ldL~kld~w~~~~~~~~~ 505 (685)
.||+-+|.|++...--.+|+|.--+-
T Consensus 445 ~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 445 MTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred cceeeEEEecCCCceEEEEeecchhh
Confidence 36888888888877778888865443
No 151
>PTZ00420 coronin; Provisional
Probab=69.02 E-value=2.3e+02 Score=33.00 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=26.6
Q ss_pred eEEEEECCCCcEE-EcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 157 DFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 157 dv~~yD~~t~~W~-~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
.+.+||+.+..=. .+. .+ .. -..+.| ++.+++.|+.. ..|.+||+.+..
T Consensus 149 tIrIWDl~tg~~~~~i~---~~--~~-V~SlswspdG~lLat~s~D---------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN---MP--KK-LSSLKWNIKGNLLSGTCVG---------KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEECCCCcEEEEEe---cC--Cc-EEEEEECCCCCEEEEEecC---------CEEEEEECCCCc
Confidence 4778888776411 111 11 11 122223 56777766632 468899998754
No 152
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=67.78 E-value=2.6e+02 Score=33.18 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=81.7
Q ss_pred eEEEEEC--CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCce
Q 005655 128 HQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205 (685)
Q Consensus 128 ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~ 205 (685)
-..++++ |.-+.||+.. +..+.+|+-.+.+..--.. ....|.......-++.+++-|+-+
T Consensus 310 I~t~~~N~tGDWiA~g~~k----------lgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eD------ 371 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSK----------LGQLLVWEWQSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAED------ 371 (893)
T ss_pred eeEEEecccCCEEEEcCCc----------cceEEEEEeeccceeeecc--ccccceeeEEECCCCcEEEeccCC------
Confidence 4445555 6677777642 3456666655555442211 234444433333377888888854
Q ss_pred eeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 206 ~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
..|-+||..+.- ..++.. .+-++++++.+ .+.+++.--.++. +-.+|+...+
T Consensus 372 ---gKVKvWn~~Sgf-C~vTFt------eHts~Vt~v~f~~~g~~llssSLDGt----------------VRAwDlkRYr 425 (893)
T KOG0291|consen 372 ---GKVKVWNTQSGF-CFVTFT------EHTSGVTAVQFTARGNVLLSSSLDGT----------------VRAWDLKRYR 425 (893)
T ss_pred ---CcEEEEeccCce-EEEEec------cCCCceEEEEEEecCCEEEEeecCCe----------------EEeeeecccc
Confidence 356777776542 222222 33445555444 5555555444433 3333332221
Q ss_pred -eEEeecCCCCCCCcceeEEEEEC--CeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 284 -WSKVKKIGMPPGPRAGFSMCVHK--KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 284 -W~~~~~~g~~P~~R~g~s~~~~~--~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
..... .| .|..++++.++ |-|++.|+... -+++++++.|++-..
T Consensus 426 NfRTft----~P-~p~QfscvavD~sGelV~AG~~d~-------------F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 426 NFRTFT----SP-EPIQFSCVAVDPSGELVCAGAQDS-------------FEIFVWSVQTGQLLD 472 (893)
T ss_pred eeeeec----CC-CceeeeEEEEcCCCCEEEeeccce-------------EEEEEEEeecCeeee
Confidence 22221 23 34566777775 88888887653 347777777665543
No 153
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=67.16 E-value=2.2e+02 Score=32.04 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=40.5
Q ss_pred eEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCcee
Q 005655 128 HQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR 206 (685)
Q Consensus 128 ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~ 206 (685)
++++.. .+.+++.|+.+. .|.++|+.+.+-...-. .........++--++.+++.+..
T Consensus 250 ~~~~f~p~g~~i~Sgs~D~-----------tvriWd~~~~~~~~~l~--~hs~~is~~~f~~d~~~l~s~s~-------- 308 (456)
T KOG0266|consen 250 TSVAFSPDGNLLVSGSDDG-----------TVRIWDVRTGECVRKLK--GHSDGISGLAFSPDGNLLVSASY-------- 308 (456)
T ss_pred EEEEecCCCCEEEEecCCC-----------cEEEEeccCCeEEEeee--ccCCceEEEEECCCCCEEEEcCC--------
Confidence 444444 357888888643 47788888855443322 12222222222225666666654
Q ss_pred eeceEEEEEcCCCce
Q 005655 207 YYNDLYVFDLDQFKW 221 (685)
Q Consensus 207 ~~~dv~~yD~~t~~W 221 (685)
-..+.+||+.+..-
T Consensus 309 -d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSK 322 (456)
T ss_pred -CccEEEEECCCCce
Confidence 24688899887763
No 154
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=66.74 E-value=1.8e+02 Score=30.93 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=77.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~ 159 (685)
++..||+|-. + -++.-.=.-.+|..++... +.|-..+.++++ ++.++++|.. ..++
T Consensus 71 ~~~g~ivG~~---g-------~ll~T~DgG~tW~~v~l~~-~lpgs~~~i~~l~~~~~~l~~~~------------G~iy 127 (302)
T PF14870_consen 71 GNEGWIVGEP---G-------LLLHTTDGGKTWERVPLSS-KLPGSPFGITALGDGSAELAGDR------------GAIY 127 (302)
T ss_dssp TTEEEEEEET---T-------EEEEESSTTSS-EE----T-T-SS-EEEEEEEETTEEEEEETT--------------EE
T ss_pred CCceEEEcCC---c-------eEEEecCCCCCcEEeecCC-CCCCCeeEEEEcCCCcEEEEcCC------------CcEE
Confidence 5778887641 1 1232222356899986432 345555666665 5678877643 2244
Q ss_pred EEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccc
Q 005655 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (685)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~ 238 (685)
+=.-.-.+|+.+... ..-+-..+... ++.+++++.. + +-+...|+-...|...... ..|.-
T Consensus 128 ~T~DgG~tW~~~~~~---~~gs~~~~~r~~dG~~vavs~~-G--------~~~~s~~~G~~~w~~~~r~------~~~ri 189 (302)
T PF14870_consen 128 RTTDGGKTWQAVVSE---TSGSINDITRSSDGRYVAVSSR-G--------NFYSSWDPGQTTWQPHNRN------SSRRI 189 (302)
T ss_dssp EESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEETT-S--------SEEEEE-TT-SS-EEEE--------SSS-E
T ss_pred EeCCCCCCeeEcccC---CcceeEeEEECCCCcEEEEECc-c--------cEEEEecCCCccceEEccC------cccee
Confidence 433345689987652 12222222233 5565555542 1 1233557777789887654 44555
Q ss_pred eeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEe--CCCceeEEeecCCCCCCCc--ce-eEEEEE-CCeEEE
Q 005655 239 FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD--PRTWEWSKVKKIGMPPGPR--AG-FSMCVH-KKRALL 311 (685)
Q Consensus 239 ~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd--~~t~~W~~~~~~g~~P~~R--~g-~s~~~~-~~~iyv 311 (685)
.+|... ++.|+++. ..+. +++-+ -...+|..... |... .+ ..+++. .+.+++
T Consensus 190 q~~gf~~~~~lw~~~-~Gg~----------------~~~s~~~~~~~~w~~~~~----~~~~~~~~~ld~a~~~~~~~wa 248 (302)
T PF14870_consen 190 QSMGFSPDGNLWMLA-RGGQ----------------IQFSDDPDDGETWSEPII----PIKTNGYGILDLAYRPPNEIWA 248 (302)
T ss_dssp EEEEE-TTS-EEEEE-TTTE----------------EEEEE-TTEEEEE---B-----TTSS--S-EEEEEESSSS-EEE
T ss_pred hhceecCCCCEEEEe-CCcE----------------EEEccCCCCccccccccC----CcccCceeeEEEEecCCCCEEE
Confidence 555555 67787765 3332 23333 34457777332 3322 32 334444 578999
Q ss_pred eccee
Q 005655 312 FGGVV 316 (685)
Q Consensus 312 fGG~~ 316 (685)
.||..
T Consensus 249 ~gg~G 253 (302)
T PF14870_consen 249 VGGSG 253 (302)
T ss_dssp EESTT
T ss_pred EeCCc
Confidence 98863
No 155
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=65.20 E-value=1.7e+02 Score=30.14 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=61.8
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+-.||+.++.=..+.+-. .++-+-++|.+ +++-...||+++. +-++|+..-.-.+.-. .+.
T Consensus 61 qhvRlyD~~S~np~Pv~t~e--~h~kNVtaVgF~~dgrWMyTgseDgt-----------~kIWdlR~~~~qR~~~--~~s 125 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFE--GHTKNVTAVGFQCDGRWMYTGSEDGT-----------VKIWDLRSLSCQRNYQ--HNS 125 (311)
T ss_pred CeeEEEEccCCCCCceeEEe--ccCCceEEEEEeecCeEEEecCCCce-----------EEEEeccCcccchhcc--CCC
Confidence 46778888876322111111 12233344444 5777778887653 4456666533332221 122
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCc-cceeEEEeCCEEEEEecccC
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR-SGFQFFVYQDEVFLYGGYSK 256 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R-s~~s~~~~~~~Iyv~GG~~~ 256 (685)
|.. ..+..-++-=+|-|-. ...|+++|+.++.......+ ..- +--++.+.-+.-++.++.++
T Consensus 126 pVn--~vvlhpnQteLis~dq--------sg~irvWDl~~~~c~~~liP------e~~~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 126 PVN--TVVLHPNQTELISGDQ--------SGNIRVWDLGENSCTHELIP------EDDTSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred Ccc--eEEecCCcceEEeecC--------CCcEEEEEccCCccccccCC------CCCcceeeEEEcCCCcEEEEecCC
Confidence 211 2233344444444422 35799999999876654433 222 22334444455555555543
No 156
>PRK01029 tolB translocation protein TolB; Provisional
Probab=63.69 E-value=2.5e+02 Score=31.38 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=37.7
Q ss_pred eeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 272 ~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.++++||+.+.....+... .+...+.+.. +++.++|-.... -...||.+|+.+.....+..
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~-----~~~~~~p~wSpDG~~L~f~~~~~-----------g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS-----PENKESPSWAIDSLHLVYSAGNS-----------NESELYLISLITKKTRKIVI 412 (428)
T ss_pred cEEEEEECCCCCeEEccCC-----CCCccceEECCCCCEEEEEECCC-----------CCceEEEEECCCCCEEEeec
Confidence 4699999999988877542 1111222222 555555433221 13579999999998887764
No 157
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=63.12 E-value=1.6e+02 Score=35.69 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=22.0
Q ss_pred eEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC--ceEEec
Q 005655 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIK 225 (685)
Q Consensus 184 ~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~ 225 (685)
+-+++++.||+... .+.|+.+|..|. .|+.-.
T Consensus 189 TPlvvgg~lYv~t~----------~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 189 TPLKVGDTLYLCTP----------HNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred CCEEECCEEEEECC----------CCeEEEEECCCCcEEEEEcC
Confidence 34677999999755 356888888764 376544
No 158
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=62.96 E-value=1.8e+02 Score=29.64 Aligned_cols=212 Identities=14% Similarity=0.142 Sum_probs=99.8
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC-CCcEEEecCC------CCCCCcceeEEEEECCEEEEEcCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSP------NSPPPRSAHQAVSWKNYLYIFGGE 143 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~-~~~W~~l~s~------~~P~~R~~ha~v~~~~~iyvfGG~ 143 (685)
+.+++..+ +++|+||-.............-.+.+..+ -.+|...... ..+.+-.++.+..-++.|++. .+
T Consensus 50 ~p~~~~~~--~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~ 126 (275)
T PF13088_consen 50 NPSLVVDP--DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YY 126 (275)
T ss_dssp EEEEEEET--TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EE
T ss_pred CcEEEEeC--CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-Ee
Confidence 34444455 68888886321111100011111355666 3589865421 111111222233347787776 21
Q ss_pred cCCCCCccccccCeEEEEECCC-CcEEEcccCCCCCCCccceEEE-E-CCEEEEEccccCCCCceeeeceEEEEEcC-CC
Q 005655 144 FTSPNQERFHHYKDFWMLDLKT-NQWEQLNLKGCPSPRSGHRMVL-Y-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF 219 (685)
Q Consensus 144 ~~s~~~~~~~~~~dv~~yD~~t-~~W~~~~~~g~P~~Rsgh~~v~-~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~ 219 (685)
.... .....+..|.... .+|+...... +.....+.+++ . ++.||++--.. .. ..-++.+... -.
T Consensus 127 ~~~~-----~~~~~~~~~S~D~G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~-----~~~~~~~S~D~G~ 194 (275)
T PF13088_consen 127 HESG-----GSFSAFVYYSDDGGKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GN-----DDIYISRSTDGGR 194 (275)
T ss_dssp EESS-----CEEEEEEEEESSTTSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SS-----TEEEEEEESSTTS
T ss_pred eccc-----cCcceEEEEeCCCCceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CC-----CcEEEEEECCCCC
Confidence 1110 1234455566554 4699887621 22234444433 2 66888875432 11 0223333443 35
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcc
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~ 298 (685)
+|+.+... .+|.+.++..++.+ ++.++++...... ...-.+++-.-...+|..+......|...+
T Consensus 195 TWs~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~ 260 (275)
T PF13088_consen 195 TWSPPQPT---NLPNPNSSISLVRLSDGRLLLVYNNPDG-----------RSNLSLYVSEDGGKTWSRPKTIDDGPNGDS 260 (275)
T ss_dssp S-EEEEEE---ECSSCCEEEEEEECTTSEEEEEEECSST-----------SEEEEEEEECTTCEEEEEEEEEEEEE-CCE
T ss_pred cCCCceec---ccCcccCCceEEEcCCCCEEEEEECCCC-----------CCceEEEEEeCCCCcCCccEEEeCCCCCcE
Confidence 79986533 12566666666555 6688887773211 222223333444789987754322232344
Q ss_pred eeE-EEEE-CCeEEE
Q 005655 299 GFS-MCVH-KKRALL 311 (685)
Q Consensus 299 g~s-~~~~-~~~iyv 311 (685)
+++ ++.+ +++|||
T Consensus 261 ~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 261 GYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEEETTEEEE
T ss_pred ECCeeEEeCCCcCCC
Confidence 544 4444 578886
No 159
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=62.67 E-value=2.2e+02 Score=30.37 Aligned_cols=173 Identities=15% Similarity=0.134 Sum_probs=74.6
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCC-CcceeEEEEECCEEEEEcCccCCCCCccccccCeEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP-PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~-~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~ 159 (685)
.++-|++|-. ..++.=.=--.+|..+....... ....+++...++..||.|-. .-++
T Consensus 27 ~~~G~~VG~~----------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------------g~ll 84 (302)
T PF14870_consen 27 PNHGWAVGAY----------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------------GLLL 84 (302)
T ss_dssp SS-EEEEETT----------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET------------TEEE
T ss_pred CCEEEEEecC----------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC------------ceEE
Confidence 5788998752 12322222235899876432111 12233444457889988742 1122
Q ss_pred EEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccc
Q 005655 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (685)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~ 238 (685)
+-.-.-.+|+++... .+.+.+.+..+.+ .+.++++|.. ..||+=.=.-.+|+.+... .. -+-
T Consensus 85 ~T~DgG~tW~~v~l~-~~lpgs~~~i~~l~~~~~~l~~~~----------G~iy~T~DgG~tW~~~~~~-----~~-gs~ 147 (302)
T PF14870_consen 85 HTTDGGKTWERVPLS-SKLPGSPFGITALGDGSAELAGDR----------GAIYRTTDGGKTWQAVVSE-----TS-GSI 147 (302)
T ss_dssp EESSTTSS-EE-----TT-SS-EEEEEEEETTEEEEEETT------------EEEESSTTSSEEEEE-S----------E
T ss_pred EecCCCCCcEEeecC-CCCCCCeeEEEEcCCCcEEEEcCC----------CcEEEeCCCCCCeeEcccC-----Cc-cee
Confidence 222245689998742 1334444544444 5567776542 2333333345689988654 11 222
Q ss_pred eeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEe
Q 005655 239 FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (685)
Q Consensus 239 ~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvf 312 (685)
..+... ++.+++++.. +. + +...++....|..... +..|.--+|.+. ++.|+++
T Consensus 148 ~~~~r~~dG~~vavs~~-G~------------~---~~s~~~G~~~w~~~~r----~~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSR-GN------------F---YSSWDPGQTTWQPHNR----NSSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp EEEEE-TTS-EEEEETT-SS------------E---EEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEE
T ss_pred EeEEECCCCcEEEEECc-cc------------E---EEEecCCCccceEEcc----CccceehhceecCCCCEEEE
Confidence 223333 5565555543 32 1 2356788888998865 356666677666 5566655
No 160
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.99 E-value=1.3e+02 Score=32.87 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=79.8
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECC--CCcEEEcccCCCCCCCccceEEEECCEEEEEcccc-CCCCceeeeceE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLK--TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFY-DTLREVRYYNDL 211 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~--t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~-~~~~~~~~~~dv 211 (685)
-.|+.+||.-. .+.+-+||+. ...|+.-. .|.-+-+...-+|.--|-.+-|.. ...-..+.+..|
T Consensus 161 p~Iva~GGke~---------~n~lkiwdle~~~qiw~aKN---vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 161 PYIVATGGKEN---------INELKIWDLEQSKQIWSAKN---VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceEecCchhc---------ccceeeeecccceeeeeccC---CCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 46888999643 2445555554 44576433 355666666655543333333310 000011235678
Q ss_pred EEEEcCCCceE--EeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 212 YVFDLDQFKWQ--EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 212 ~~yD~~t~~W~--~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
-.||+....=- .+... -.+.+..+..+ .+..+++|-+.+ ++..||..+..--...-
T Consensus 229 R~YDt~~qRRPV~~fd~~-----E~~is~~~l~p-~gn~Iy~gn~~g----------------~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 229 RLYDTRHQRRPVAQFDFL-----ENPISSTGLTP-SGNFIYTGNTKG----------------QLAKFDLRGGKLLGCGL 286 (412)
T ss_pred EEecCcccCcceeEeccc-----cCcceeeeecC-CCcEEEEecccc----------------hhheecccCceeecccc
Confidence 89998754321 11111 22233322222 444455554443 37788887765444433
Q ss_pred CCCCCCCcceeEEEEEC-CeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 290 IGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 290 ~g~~P~~R~g~s~~~~~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
.|..-+.| +..+|. +.++..+|... -|-+||+.|+
T Consensus 287 kg~tGsir---sih~hp~~~~las~GLDR--------------yvRIhD~ktr 322 (412)
T KOG3881|consen 287 KGITGSIR---SIHCHPTHPVLASCGLDR--------------YVRIHDIKTR 322 (412)
T ss_pred CCccCCcc---eEEEcCCCceEEeeccce--------------eEEEeecccc
Confidence 23222222 344554 47888888753 3888898773
No 161
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=61.13 E-value=33 Score=38.64 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=17.7
Q ss_pred EcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccC
Q 005655 107 DVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145 (685)
Q Consensus 107 d~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~ 145 (685)
++..-.|+++.... . -.+..-++.+|=|+|...
T Consensus 47 ei~~~~w~k~~r~~--~----LrV~tk~g~~~~~~GF~d 79 (615)
T KOG0526|consen 47 EIDKVKWQKGVRGY--G----LRVFTKDGGVYRFDGFRD 79 (615)
T ss_pred Hhhhhhhhhhcccc--c----eEEEccCCceEEecCcCH
Confidence 44556777664321 1 112222567888888643
No 162
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=61.00 E-value=3.5e+02 Score=32.23 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=63.2
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++++++.|+.++ .|-+||..++-.. +. .-..-++++++.+ .++.++.--.+ ..|
T Consensus 361 Dgq~iaTG~eDg-----------KVKvWn~~SgfC~-vT---FteHts~Vt~v~f~~~g~~llssSLD---------GtV 416 (893)
T KOG0291|consen 361 DGQLIATGAEDG-----------KVKVWNTQSGFCF-VT---FTEHTSGVTAVQFTARGNVLLSSSLD---------GTV 416 (893)
T ss_pred CCcEEEeccCCC-----------cEEEEeccCceEE-EE---eccCCCceEEEEEEecCCEEEEeecC---------CeE
Confidence 688899998754 3667776654332 22 2345566666555 45555543332 346
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
-.+|+..+.-.+--.. |.|+...++++. .|.|++.|+... -++++++..|.+--.+
T Consensus 417 RAwDlkRYrNfRTft~-----P~p~QfscvavD~sGelV~AG~~d~---------------F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTS-----PEPIQFSCVAVDPSGELVCAGAQDS---------------FEIFVWSVQTGQLLDI 473 (893)
T ss_pred EeeeecccceeeeecC-----CCceeeeEEEEcCCCCEEEeeccce---------------EEEEEEEeecCeeeeh
Confidence 6677765543332222 566655555444 477888877653 3577777777765544
No 163
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=58.96 E-value=3.1e+02 Score=30.92 Aligned_cols=141 Identities=15% Similarity=0.098 Sum_probs=74.8
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeE------------EEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcE
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQ------------AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW 168 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha------------~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W 168 (685)
.++|.|||.+..-.++... .|.-|.--. .+++++.++++=. -...+++++..+--
T Consensus 287 GdIylydP~td~lekldI~-lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS------------RGkaFi~~~~~~~~ 353 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIG-LPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS------------RGKAFIMRPWDGYS 353 (668)
T ss_pred CcEEEeCCCcCcceeeecC-CccccccccccccCHHHhhhhhccCCCcEEEEEe------------cCcEEEECCCCCee
Confidence 4899999999999887654 244433211 1122333222211 12355665544443
Q ss_pred EEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEE
Q 005655 169 EQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEV 248 (685)
Q Consensus 169 ~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~I 248 (685)
.++... .|...+-...++.-.++|-..+ +.+.+||..+..-..+... ..+.....+.-+++.
T Consensus 354 iqv~~~----~~VrY~r~~~~~e~~vigt~dg--------D~l~iyd~~~~e~kr~e~~------lg~I~av~vs~dGK~ 415 (668)
T COG4946 354 IQVGKK----GGVRYRRIQVDPEGDVIGTNDG--------DKLGIYDKDGGEVKRIEKD------LGNIEAVKVSPDGKK 415 (668)
T ss_pred EEcCCC----CceEEEEEccCCcceEEeccCC--------ceEEEEecCCceEEEeeCC------ccceEEEEEcCCCcE
Confidence 444332 2222222333444666665433 4688999988877776543 333332222335565
Q ss_pred EEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
++++-... .+|++|+.+..-+.+.
T Consensus 416 ~vvaNdr~----------------el~vididngnv~~id 439 (668)
T COG4946 416 VVVANDRF----------------ELWVIDIDNGNVRLID 439 (668)
T ss_pred EEEEcCce----------------EEEEEEecCCCeeEec
Confidence 55554332 3888888777655553
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.36 E-value=2.8e+02 Score=34.38 Aligned_cols=193 Identities=16% Similarity=0.091 Sum_probs=92.2
Q ss_pred CCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-----CCEE
Q 005655 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-----KNYL 137 (685)
Q Consensus 64 ~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-----~~~i 137 (685)
-.|.+|....++-.....++||+-|+. ..+-++|..+..-. .++ . ++...++++ .+.+
T Consensus 1160 ~~~~~r~~~~v~dWqQ~~G~Ll~tGd~----------r~IRIWDa~~E~~~~diP-----~-~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1160 QLPGARGTGLVVDWQQQSGHLLVTGDV----------RSIRIWDAHKEQVVADIP-----Y-GSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred cCccCCCCCeeeehhhhCCeEEecCCe----------eEEEEEecccceeEeecc-----c-CCCccceeecccccCCce
Confidence 466777655555554334778887763 24556676654322 221 1 122222222 3567
Q ss_pred EEEcCccCCCCCccccccCeEEEEECCC-------CcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeece
Q 005655 138 YIFGGEFTSPNQERFHHYKDFWMLDLKT-------NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210 (685)
Q Consensus 138 yvfGG~~~s~~~~~~~~~~dv~~yD~~t-------~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~d 210 (685)
++.|=.++ .+-.||... ..|..-.. +.+ .-|...--++.-=++.|.. -.+
T Consensus 1224 i~AGfaDG-----------svRvyD~R~a~~ds~v~~~R~h~~---~~~-Iv~~slq~~G~~elvSgs~--------~G~ 1280 (1387)
T KOG1517|consen 1224 IAAGFADG-----------SVRVYDRRMAPPDSLVCVYREHND---VEP-IVHLSLQRQGLGELVSGSQ--------DGD 1280 (1387)
T ss_pred EEEeecCC-----------ceEEeecccCCccccceeecccCC---ccc-ceeEEeecCCCcceeeecc--------CCe
Confidence 77764332 355666542 23333222 111 3333333334443444532 357
Q ss_pred EEEEEcCCCceEEeccCCCCCCCCCc-cc--ee-EEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeE
Q 005655 211 LYVFDLDQFKWQEIKPRFGSMWPSPR-SG--FQ-FFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (685)
Q Consensus 211 v~~yD~~t~~W~~v~~~~~~~~P~~R-s~--~s-~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (685)
|..+|+... ....+.. +-.++ +| ++ +.++ .--|+..|+. +. +-+|+.....-.
T Consensus 1281 I~~~DlR~~--~~e~~~~---iv~~~~yGs~lTal~VH~hapiiAsGs~-q~----------------ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1281 IQLLDLRMS--SKETFLT---IVAHWEYGSALTALTVHEHAPIIASGSA-QL----------------IKIYSLSGEQLN 1338 (1387)
T ss_pred EEEEecccC--cccccce---eeeccccCccceeeeeccCCCeeeecCc-ce----------------EEEEecChhhhc
Confidence 888888764 2222220 11222 23 33 3344 4456766665 22 445555444433
Q ss_pred EeecCCCCCCCcce--eEEEEECCeEEEecceec
Q 005655 286 KVKKIGMPPGPRAG--FSMCVHKKRALLFGGVVD 317 (685)
Q Consensus 286 ~~~~~g~~P~~R~g--~s~~~~~~~iyvfGG~~~ 317 (685)
.+...+..-..|.+ .++++|..++.+.-|..+
T Consensus 1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred ccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence 33332222234444 356677888888877655
No 165
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=58.29 E-value=2.2e+02 Score=29.05 Aligned_cols=150 Identities=14% Similarity=0.209 Sum_probs=76.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC-cEEEecCCCCCCCcceeEEEE-E-CCEEEEEcCccCCCCCccccccCe
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVS-W-KNYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~-~W~~l~s~~~P~~R~~ha~v~-~-~~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
++.|++. .+.... . ....++.|+.+.+ +|....... +.....+.+.+ . ++.||++--.... ..
T Consensus 118 ~G~l~~~--~~~~~~-~-~~~~~~~~S~D~G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~~~---------~~ 183 (275)
T PF13088_consen 118 DGRLIAP--YYHESG-G-SFSAFVYYSDDGGKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTEGN---------DD 183 (275)
T ss_dssp TTEEEEE--EEEESS-C-EEEEEEEEESSTTSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEECSS---------TE
T ss_pred CCCEEEE--Eeeccc-c-CcceEEEEeCCCCceeecccccc-ccCCcceeEEEECCCCcEEEEEEccCC---------Cc
Confidence 6777776 211111 1 2344555666654 698775542 23244444443 3 5788887543211 12
Q ss_pred EE-EEECC-CCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 158 FW-MLDLK-TNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 158 v~-~yD~~-t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
++ .+... -.+|+...+..+|.+.++..++.+ ++.++++... ...+ ..-.+++-.-...+|..+.....+ +.
T Consensus 184 ~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~r---~~l~l~~S~D~g~tW~~~~~i~~~--~~ 257 (275)
T PF13088_consen 184 IYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNN-PDGR---SNLSLYVSEDGGKTWSRPKTIDDG--PN 257 (275)
T ss_dssp EEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEEC-SSTS---EEEEEEEECTTCEEEEEEEEEEEE--E-
T ss_pred EEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEEC-CCCC---CceEEEEEeCCCCcCCccEEEeCC--CC
Confidence 33 33333 247998765446777777666665 5688887772 1122 122333323336789876554211 22
Q ss_pred CccceeEE-Ee-CCEEEE
Q 005655 235 PRSGFQFF-VY-QDEVFL 250 (685)
Q Consensus 235 ~Rs~~s~~-~~-~~~Iyv 250 (685)
..+++..+ .. ++.|||
T Consensus 258 ~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 258 GDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CCEEEEEEEEEETTEEEE
T ss_pred CcEECCeeEEeCCCcCCC
Confidence 23444443 33 678886
No 166
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=56.98 E-value=2.9e+02 Score=29.95 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=53.2
Q ss_pred cEEEEEcCCC--cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCC--cEEEcccCCCC
Q 005655 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP 177 (685)
Q Consensus 102 dv~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g~P 177 (685)
.+|+||..+. .|..-... . ++..-..++.++.+|+.-. -+.++.+|..+. .|..-...+ .
T Consensus 122 ~~y~ld~~~G~~~W~~~~~~--~-~~~~~~~v~~~~~v~~~s~------------~g~~~al~~~tG~~~W~~~~~~~-~ 185 (370)
T COG1520 122 KLYALDASTGTLVWSRNVGG--S-PYYASPPVVGDGTVYVGTD------------DGHLYALNADTGTLKWTYETPAP-L 185 (370)
T ss_pred eEEEEECCCCcEEEEEecCC--C-eEEecCcEEcCcEEEEecC------------CCeEEEEEccCCcEEEEEecCCc-c
Confidence 6899999655 58865443 1 4444444555666666531 146788888765 487443321 1
Q ss_pred CCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC--CceEEe
Q 005655 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--FKWQEI 224 (685)
Q Consensus 178 ~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t--~~W~~v 224 (685)
..+.....+.-.+.+|+- ... +...++.+|+.+ ..|..-
T Consensus 186 ~~~~~~~~~~~~~~vy~~-~~~-------~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 186 SLSIYGSPAIASGTVYVG-SDG-------YDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred ccccccCceeecceEEEe-cCC-------CcceEEEEEccCCcEeeeee
Confidence 222222222344555553 211 112688999865 458753
No 167
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=56.86 E-value=1.3e+02 Score=29.61 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=45.0
Q ss_pred eeeccEEEEEcCCCcEEEecCCCCC---CCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEccc
Q 005655 98 YVYGDLYRYDVEKQEWKVISSPNSP---PPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 98 ~~~ndv~~yd~~~~~W~~l~s~~~P---~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
.....+|++|..++.|..+...+.+ .|. ...-.- .+-++++|..++... --..|++|++.|+.-+.+..
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS-----~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVS-----KGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEc-----cCCeEEEEEccCCceeEeee
Confidence 3567999999999998866433221 233 222222 356777775544422 23689999999999888876
No 168
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=55.40 E-value=3.1e+02 Score=30.56 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=40.1
Q ss_pred eeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc
Q 005655 98 YVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ 167 (685)
Q Consensus 98 ~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~ 167 (685)
...|++|++|-.-+---+++... |..| -+++-.+++.+|++- |..++-++..|++.-.
T Consensus 403 e~~N~vYilDe~lnvvGkltGl~-~gER-IYAvRf~gdv~yiVT----------frqtDPlfviDlsNPe 460 (603)
T COG4880 403 EPVNAVYILDENLNVVGKLTGLA-PGER-IYAVRFVGDVLYIVT----------FRQTDPLFVIDLSNPE 460 (603)
T ss_pred CccceeEEEcCCCcEEEEEeccC-CCce-EEEEEEeCceEEEEE----------EeccCceEEEEcCCCC
Confidence 36799999998888777776653 4555 345556688888874 3335668888887543
No 169
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=55.24 E-value=2.4e+02 Score=28.50 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=63.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
+++||.--|.+ -.+.+.++|..+.+=..-.+.. |..-++-..+.+++.+|+.-=.. .-.+.
T Consensus 55 ~g~i~esTG~y-------g~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~e-----------gvaf~ 115 (262)
T COG3823 55 DGHILESTGLY-------GFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKE-----------GVAFK 115 (262)
T ss_pred CCEEEEecccc-------ccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEecc-----------ceeEE
Confidence 56777766653 2357899999966422112221 34456778888899999874321 22456
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
||..| ...+.. .+..-.|.+.+.-+..|++--|. ..+..-||.++
T Consensus 116 ~d~~t--~~~lg~--~~y~GeGWgLt~d~~~LimsdGs----------atL~frdP~tf 160 (262)
T COG3823 116 YDADT--LEELGR--FSYEGEGWGLTSDDKNLIMSDGS----------ATLQFRDPKTF 160 (262)
T ss_pred EChHH--hhhhcc--cccCCcceeeecCCcceEeeCCc----------eEEEecCHHHh
Confidence 77644 333333 35666777778777788877662 34555566654
No 170
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=54.72 E-value=2.3e+02 Score=33.10 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=68.0
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCC----cceeEEEEECCEEE
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP----RSAHQAVSWKNYLY 138 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~----R~~ha~v~~~~~iy 138 (685)
...|..+...+.+.....++.+|+.-- ...++..+...+-+-+.+.+.. |.+ -+.-.....+++|-
T Consensus 422 ~~~~~~~~~a~~i~ftid~~k~~~~s~---------~~~~le~~el~~ps~kel~~~~-~~~~~~~I~~l~~SsdG~yia 491 (691)
T KOG2048|consen 422 DDVPLALLDASAISFTIDKNKLFLVSK---------NIFSLEEFELETPSFKELKSIQ-SQAKCPSISRLVVSSDGNYIA 491 (691)
T ss_pred ccchhhhccceeeEEEecCceEEEEec---------ccceeEEEEecCcchhhhhccc-cccCCCcceeEEEcCCCCEEE
Confidence 345555544444444333566666551 2235666776666655443322 121 11122222378888
Q ss_pred EEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEE---EECCEEEEEccccCCCCceeeeceEEEEE
Q 005655 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMV---LYKHKIIVFGGFYDTLREVRYYNDLYVFD 215 (685)
Q Consensus 139 vfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v---~~~~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (685)
++++. ..+++||+.+.+-..+.+. +. +..-+|. ...+.|.+.- ..|.++.||
T Consensus 492 a~~t~------------g~I~v~nl~~~~~~~l~~r--ln-~~vTa~~~~~~~~~~lvvat----------s~nQv~efd 546 (691)
T KOG2048|consen 492 AISTR------------GQIFVYNLETLESHLLKVR--LN-IDVTAAAFSPFVRNRLVVAT----------SNNQVFEFD 546 (691)
T ss_pred EEecc------------ceEEEEEcccceeecchhc--cC-cceeeeeccccccCcEEEEe----------cCCeEEEEe
Confidence 88753 5799999999887766542 11 3222222 2245566642 247888998
Q ss_pred cCC---CceEEec
Q 005655 216 LDQ---FKWQEIK 225 (685)
Q Consensus 216 ~~t---~~W~~v~ 225 (685)
+.. ..|....
T Consensus 547 i~~~~l~~ws~~n 559 (691)
T KOG2048|consen 547 IEARNLTRWSKNN 559 (691)
T ss_pred cchhhhhhhhhcc
Confidence 843 3455443
No 171
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=54.31 E-value=2.5e+02 Score=29.35 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=61.6
Q ss_pred eccEEEEEcCCCc--------EEEecCCCCCCCcceeEEEEEC--CEEEEEcCccCCCCCccccccCeEEEEECCCCcEE
Q 005655 100 YGDLYRYDVEKQE--------WKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE 169 (685)
Q Consensus 100 ~ndv~~yd~~~~~--------W~~l~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~ 169 (685)
...|.+|++.... ..+++ .+-+....+.++ +..+|.|+..++ +-+||..++.=.
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~-----t~~skit~a~Wg~l~~~ii~Ghe~G~-----------is~~da~~g~~~ 182 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIP-----TPDSKITSALWGPLGETIIAGHEDGS-----------ISIYDARTGKEL 182 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEec-----CCccceeeeeecccCCEEEEecCCCc-----------EEEEEcccCcee
Confidence 3457788887433 33443 333444555553 778888887554 668888876322
Q ss_pred EcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEE
Q 005655 170 QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVF 249 (685)
Q Consensus 170 ~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iy 249 (685)
.-.. ... .+.-..+....+.-|.+-|..++ ..-++|..+..-.+--.. -.|.-..++.+..+.++
T Consensus 183 v~s~-~~h-~~~Ind~q~s~d~T~FiT~s~Dt--------takl~D~~tl~v~Kty~t-----e~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 183 VDSD-EEH-SSKINDLQFSRDRTYFITGSKDT--------TAKLVDVRTLEVLKTYTT-----ERPVNTAAISPLLDHVI 247 (327)
T ss_pred eech-hhh-ccccccccccCCcceEEecccCc--------cceeeeccceeeEEEeee-----cccccceecccccceEE
Confidence 1110 001 11111122223334444444332 123344443332222111 23445556667789999
Q ss_pred EEecccC
Q 005655 250 LYGGYSK 256 (685)
Q Consensus 250 v~GG~~~ 256 (685)
+-||...
T Consensus 248 lgGGqeA 254 (327)
T KOG0643|consen 248 LGGGQEA 254 (327)
T ss_pred ecCCcee
Confidence 9888754
No 172
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=51.40 E-value=8.9 Score=45.45 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHHhhhceeEEEe
Q 005655 37 EDDIDAILLSIQKEEAKKKEVHV 59 (685)
Q Consensus 37 ~edi~~~l~~~~~~~~~~~~~~~ 59 (685)
--+|++|+.+|-..|....+-.+
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPV 1034 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPV 1034 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCc
Confidence 35788888888888776654443
No 173
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.15 E-value=2.2e+02 Score=31.16 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=49.8
Q ss_pred ccCeEEEEECCCCcEEEccc-CCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 154 HYKDFWMLDLKTNQWEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 154 ~~~dv~~yD~~t~~W~~~~~-~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
.+..|-.||+..+.= ++.. .-+-.+.+..+.+.-.+.|| +|- +..++-.||+.+.+---.... +..
T Consensus 224 ~~hqvR~YDt~~qRR-PV~~fd~~E~~is~~~l~p~gn~Iy-~gn---------~~g~l~~FD~r~~kl~g~~~k--g~t 290 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQRR-PVAQFDFLENPISSTGLTPSGNFIY-TGN---------TKGQLAKFDLRGGKLLGCGLK--GIT 290 (412)
T ss_pred cceeEEEecCcccCc-ceeEeccccCcceeeeecCCCcEEE-Eec---------ccchhheecccCceeeccccC--Ccc
Confidence 467788999985542 2221 11233333333333344444 443 356788999887654333222 111
Q ss_pred CCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC
Q 005655 233 PSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (685)
Q Consensus 233 P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (685)
-..| ++..+ ...++..+|.+.. +-+||..+
T Consensus 291 Gsir---sih~hp~~~~las~GLDRy----------------vRIhD~kt 321 (412)
T KOG3881|consen 291 GSIR---SIHCHPTHPVLASCGLDRY----------------VRIHDIKT 321 (412)
T ss_pred CCcc---eEEEcCCCceEEeecccee----------------EEEeeccc
Confidence 1122 22233 4468888888765 66788766
No 174
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.40 E-value=8.7 Score=45.52 Aligned_cols=8 Identities=25% Similarity=0.061 Sum_probs=3.6
Q ss_pred EEEeccee
Q 005655 309 ALLFGGVV 316 (685)
Q Consensus 309 iyvfGG~~ 316 (685)
+|++||.+
T Consensus 1268 ~~~~G~FH 1275 (1516)
T KOG1832|consen 1268 DYGGGGFH 1275 (1516)
T ss_pred eccccccc
Confidence 44444443
No 175
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=50.03 E-value=2e+02 Score=28.33 Aligned_cols=70 Identities=14% Similarity=0.300 Sum_probs=43.9
Q ss_pred ccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 154 ~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
-...+|++|+.++.|..+..... ...+..--+.| .+-++++|..+++-. --..||+|++.+..=+.+...
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~-~~k~sPK~i~WiDD~~L~vIIG~a~GTvS---~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQN-EEKYSPKYIEWIDDNNLAVIIGYAHGTVS---KGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred cceeEEEEecCCCceEEEEecCc-ccccCCceeEEecCCcEEEEEccccceEc---cCCeEEEEEccCCceeEeeec
Confidence 36789999999988876644211 11333334555 335666665444321 135899999999988888765
No 176
>PRK10115 protease 2; Provisional
Probab=49.87 E-value=5.2e+02 Score=30.88 Aligned_cols=150 Identities=10% Similarity=0.048 Sum_probs=74.8
Q ss_pred CeEEEEECCCCcE--EEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEc--CCCceEEeccCCCC
Q 005655 156 KDFWMLDLKTNQW--EQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGS 230 (685)
Q Consensus 156 ~dv~~yD~~t~~W--~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~ 230 (685)
.++|++++.|..- ..+-. .+........... ++..+++..... ..+.+++|+. .+..|..+.+.+
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~-- 268 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASA------TTSEVLLLDAELADAEPFVFLPRR-- 268 (686)
T ss_pred CEEEEEECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECC------ccccEEEEECcCCCCCceEEEECC--
Confidence 7899999998833 22221 1222233222223 333333444322 2356888873 334443333221
Q ss_pred CCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC-CceeEEeecCCCCCCCcceeEEEEECCeE
Q 005655 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (685)
Q Consensus 231 ~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~~~~~g~~P~~R~g~s~~~~~~~i 309 (685)
.... +.....++.+||.--.... ...+..+++. ...|+.+.+.. ..+.--++.+.++.|
T Consensus 269 --~~~~--~~~~~~~~~ly~~tn~~~~-------------~~~l~~~~~~~~~~~~~l~~~~---~~~~i~~~~~~~~~l 328 (686)
T PRK10115 269 --KDHE--YSLDHYQHRFYLRSNRHGK-------------NFGLYRTRVRDEQQWEELIPPR---ENIMLEGFTLFTDWL 328 (686)
T ss_pred --CCCE--EEEEeCCCEEEEEEcCCCC-------------CceEEEecCCCcccCeEEECCC---CCCEEEEEEEECCEE
Confidence 1122 2333447788887543221 1225666665 57898886521 122233445557777
Q ss_pred EEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
++..-..+ ...|+++++.+.....+.
T Consensus 329 ~~~~~~~g------------~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 329 VVEERQRG------------LTSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEEEeCC------------EEEEEEEcCCCCceEEec
Confidence 76654332 334777777665555554
No 177
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=49.53 E-value=3.9e+02 Score=31.29 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=68.3
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE---CCEEEEEcCccC
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFT 145 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyvfGG~~~ 145 (685)
+.-.+.++.| ++.++++|-. .--.+|++.+.-+ -+...-...|..+-..+...+ ++.+++..
T Consensus 383 ~nIs~~aiSP--dg~~Ia~st~--------~~~~iy~L~~~~~-vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s---- 447 (691)
T KOG2048|consen 383 ENISCAAISP--DGNLIAISTV--------SRTKIYRLQPDPN-VKVINVDDVPLALLDASAISFTIDKNKLFLVS---- 447 (691)
T ss_pred cceeeeccCC--CCCEEEEeec--------cceEEEEeccCcc-eeEEEeccchhhhccceeeEEEecCceEEEEe----
Confidence 3334445555 5777777763 1123555555442 121122223455533333322 57777765
Q ss_pred CCCCccccccCeEEEEECCCCcEEEcccCC---CCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g---~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
.+ ..++..|+..+.+-..+.... +..+-+.......+++|.+++++ ..+++|++.+.+-.
T Consensus 448 -~~------~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~----------g~I~v~nl~~~~~~ 510 (691)
T KOG2048|consen 448 -KN------IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR----------GQIFVYNLETLESH 510 (691)
T ss_pred -cc------cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc----------ceEEEEEcccceee
Confidence 11 246778888887776654421 11122222222237899999864 57999999988766
Q ss_pred EeccC
Q 005655 223 EIKPR 227 (685)
Q Consensus 223 ~v~~~ 227 (685)
.+.+.
T Consensus 511 ~l~~r 515 (691)
T KOG2048|consen 511 LLKVR 515 (691)
T ss_pred cchhc
Confidence 66543
No 178
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=49.34 E-value=13 Score=45.41 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=10.0
Q ss_pred CCCCCcceEEEEeccCCCEEEEEc
Q 005655 65 APSPRSNCSLNINPLKETELILYG 88 (685)
Q Consensus 65 ~P~~R~~~s~~~~p~~~~~L~vfG 88 (685)
+|..--+|.+... ..+...+++|
T Consensus 1087 e~ggepdh~~~a~-~~Ded~i~~g 1109 (3015)
T KOG0943|consen 1087 EPGGEPDHPAMAP-DGDEDFILAG 1109 (3015)
T ss_pred CCCCCCCCcccCC-CCCccccccc
Confidence 4444444544433 1123455555
No 179
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=49.05 E-value=5.1e+02 Score=30.53 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=20.1
Q ss_pred CCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 294 PGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 294 P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
|..-...+.+..++.|++ ||..+ -|++|....++|-
T Consensus 258 PttsiWsa~~L~NgDIvv-g~SDG--------------~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 258 PTTSIWSAKVLLNGDIVV-GGSDG--------------RVRVFTVDKDRKA 293 (745)
T ss_pred CccceEEEEEeeCCCEEE-eccCc--------------eEEEEEecccccC
Confidence 443444444555777665 44322 2777777777664
No 180
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=47.50 E-value=3.3e+02 Score=30.32 Aligned_cols=17 Identities=18% Similarity=0.620 Sum_probs=14.4
Q ss_pred EEEEeCCCceeEEeecC
Q 005655 274 LWSLDPRTWEWSKVKKI 290 (685)
Q Consensus 274 v~~yd~~t~~W~~~~~~ 290 (685)
+|.|+-.+..|+.+...
T Consensus 456 Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKEL 472 (506)
T ss_pred EEEEecccccceeeehh
Confidence 77888889999999764
No 181
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=47.07 E-value=3.7e+02 Score=28.27 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=52.1
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
+|.+...||.... +..+|+...+= +.. +...-.-+++++..+..++.-+.. .+|-+
T Consensus 203 DGslcasGgkdg~-----------~~LwdL~~~k~--lys--l~a~~~v~sl~fspnrywL~~at~---------~sIkI 258 (315)
T KOG0279|consen 203 DGSLCASGGKDGE-----------AMLWDLNEGKN--LYS--LEAFDIVNSLCFSPNRYWLCAATA---------TSIKI 258 (315)
T ss_pred CCCEEecCCCCce-----------EEEEEccCCce--eEe--ccCCCeEeeEEecCCceeEeeccC---------CceEE
Confidence 7999999997543 44555544332 222 233344566777777777766642 34667
Q ss_pred EEcCCCce-EEeccCCCCCCC-CCc---cceeEEEeCCEEEEEecccCC
Q 005655 214 FDLDQFKW-QEIKPRFGSMWP-SPR---SGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 214 yD~~t~~W-~~v~~~~~~~~P-~~R---s~~s~~~~~~~Iyv~GG~~~~ 257 (685)
||+.+..- ..+.+. ...| ... ..-+++...+..-+|-||...
T Consensus 259 wdl~~~~~v~~l~~d--~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 259 WDLESKAVVEELKLD--GIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred Eeccchhhhhhcccc--ccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 77665432 111111 1112 111 122333447777788888765
No 182
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=46.91 E-value=3.8e+02 Score=28.44 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=49.9
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCc
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS 181 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs 181 (685)
.|-.|+...++-+..-....|. -.++..+..-.++||.. ..+-+||+.+..=..+..-. .+-.
T Consensus 36 slrlYdv~~~~l~~~~~~~~pl----L~c~F~d~~~~~~G~~d-----------g~vr~~Dln~~~~~~igth~--~~i~ 98 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFKHGAPL----LDCAFADESTIVTGGLD-----------GQVRRYDLNTGNEDQIGTHD--EGIR 98 (323)
T ss_pred cEEEEeccchhhhhheecCCce----eeeeccCCceEEEeccC-----------ceEEEEEecCCcceeeccCC--CceE
Confidence 5778888888544221111121 23444455556677753 35889999998877765521 1111
Q ss_pred cceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 182 GHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 182 gh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
. +.. +..-.+|-||++ ..+-++|+.+
T Consensus 99 c--i~~~~~~~~vIsgsWD---------~~ik~wD~R~ 125 (323)
T KOG1036|consen 99 C--IEYSYEVGCVISGSWD---------KTIKFWDPRN 125 (323)
T ss_pred E--EEeeccCCeEEEcccC---------ccEEEEeccc
Confidence 1 111 234466778874 4577778765
No 183
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=46.48 E-value=3.5e+02 Score=27.83 Aligned_cols=84 Identities=12% Similarity=0.189 Sum_probs=55.5
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEEC--CEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (685)
+-+..||..|++-.+--- ...+-. -.+.++ ..+++-|+|+ ..+-+||..++....|... .
T Consensus 81 k~v~vwDV~TGkv~Rr~r--gH~aqV--NtV~fNeesSVv~SgsfD---------~s~r~wDCRS~s~ePiQil-----d 142 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFR--GHLAQV--NTVRFNEESSVVASGSFD---------SSVRLWDCRSRSFEPIQIL-----D 142 (307)
T ss_pred ceEEEEEcccCeeeeecc--ccccee--eEEEecCcceEEEecccc---------ceeEEEEcccCCCCccchh-----h
Confidence 458889998875332100 011111 123343 4677778774 4688999999988877776 6
Q ss_pred CCccceeEEEeCCEEEEEecccCC
Q 005655 234 SPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 234 ~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
..+-+-+.+.+.+..+|-|-..+.
T Consensus 143 ea~D~V~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred hhcCceeEEEecccEEEeeccCCc
Confidence 777888888888888888877665
No 184
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=46.39 E-value=3.9e+02 Score=28.38 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=49.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
+.|-+||..+..=..+.....| -|+-+-. .....+|.||++.. +-.+|+.... .....-.+-
T Consensus 75 g~vr~~Dln~~~~~~igth~~~-i~ci~~~--~~~~~vIsgsWD~~-----------ik~wD~R~~~----~~~~~d~~k 136 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEG-IRCIEYS--YEVGCVISGSWDKT-----------IKFWDPRNKV----VVGTFDQGK 136 (323)
T ss_pred ceEEEEEecCCcceeeccCCCc-eEEEEee--ccCCeEEEcccCcc-----------EEEEeccccc----cccccccCc
Confidence 3678899888876666554422 1211111 23557788887543 5566776511 111112222
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.-++|.+.++.|+| |+. -..|..||+.+.
T Consensus 137 kVy~~~v~g~~LvV-g~~---------~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 137 KVYCMDVSGNRLVV-GTS---------DRKVLIYDLRNL 165 (323)
T ss_pred eEEEEeccCCEEEE-eec---------CceEEEEEcccc
Confidence 44455555665555 443 256888888764
No 185
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=46.32 E-value=3.1e+02 Score=30.62 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=11.4
Q ss_pred eceEEEEEcCCCce
Q 005655 208 YNDLYVFDLDQFKW 221 (685)
Q Consensus 208 ~~dv~~yD~~t~~W 221 (685)
-+.+|+||..+..|
T Consensus 306 p~~tlcyD~at~~~ 319 (469)
T PF11134_consen 306 PRKTLCYDAATSQW 319 (469)
T ss_pred CCceEEEEcccCCc
Confidence 36789999999855
No 186
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=45.62 E-value=4.8e+02 Score=29.28 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (685)
..+++||+..+.=......+++...+ ..++...+.+++.|+++ ..|.++|+.+.+-...-.. .
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D---------~tvriWd~~~~~~~~~l~~-------h 287 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDD---------GTVRIWDVRTGECVRKLKG-------H 287 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCC---------CcEEEEeccCCeEEEeeec-------c
Confidence 35888888444222222223444442 22223355899999864 4688889888543333221 1
Q ss_pred ccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCcee
Q 005655 236 RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (685)
Q Consensus 236 Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (685)
..+-+.+.+ ++.+++.+.+.+. +.+||+.+..-
T Consensus 288 s~~is~~~f~~d~~~l~s~s~d~~----------------i~vwd~~~~~~ 322 (456)
T KOG0266|consen 288 SDGISGLAFSPDGNLLVSASYDGT----------------IRVWDLETGSK 322 (456)
T ss_pred CCceEEEEECCCCCEEEEcCCCcc----------------EEEEECCCCce
Confidence 122233333 7778888777654 77888877663
No 187
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=44.78 E-value=4.8e+02 Score=29.04 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=33.0
Q ss_pred EEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
|.+||+.... .++....+... +-..+.+ .+...+++|. .-.||.|+-.+..|+.+...
T Consensus 413 V~lwDLRKl~--n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~---------~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 413 VKLWDLRKLK--NFKTIQLDEKK-EVNSLSFDQSGTYLGIAGS---------DLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred EEEEEehhhc--ccceeeccccc-cceeEEEcCCCCeEEeecc---------eeEEEEEecccccceeeehh
Confidence 7788886543 22221112221 2333333 3555556653 23577888889999999876
No 188
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=44.61 E-value=4.6e+02 Score=28.68 Aligned_cols=184 Identities=13% Similarity=0.089 Sum_probs=89.2
Q ss_pred ccEEEEEcCCCc-EEEecCCCCCCCcceeEEEEE---CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC
Q 005655 101 GDLYRYDVEKQE-WKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC 176 (685)
Q Consensus 101 ndv~~yd~~~~~-W~~l~s~~~P~~R~~ha~v~~---~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~ 176 (685)
+.|.++|..+++ -..++.+. .-|....+ +.++||.+. . ..+-++|+.+.+=. .. .
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~-----~~h~~~~~s~Dgr~~yv~~r-d-----------g~vsviD~~~~~~v--~~--i 74 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG-----APHAGLKFSPDGRYLYVANR-D-----------GTVSVIDLATGKVV--AT--I 74 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST-----TEEEEEE-TT-SSEEEEEET-T-----------SEEEEEETTSSSEE--EE--E
T ss_pred CEEEEEECCCCeEEEEEcCCC-----CceeEEEecCCCCEEEEEcC-C-----------CeEEEEECCcccEE--EE--E
Confidence 578889998875 34554432 22655544 467999853 1 35889999988732 22 2
Q ss_pred CCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEE-eccCC-CCCCCCCccceeEEEeCCEEEEEec
Q 005655 177 PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRF-GSMWPSPRSGFQFFVYQDEVFLYGG 253 (685)
Q Consensus 177 P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~-~~~~P~~Rs~~s~~~~~~~Iyv~GG 253 (685)
+.+...+++++- +++.++.+.+ ..+.+.++|..+.+=.+ ++... ....+.+|...-........||+--
T Consensus 75 ~~G~~~~~i~~s~DG~~~~v~n~--------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 75 KVGGNPRGIAVSPDGKYVYVANY--------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp E-SSEEEEEEE--TTTEEEEEEE--------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred ecCCCcceEEEcCCCCEEEEEec--------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 334444444443 4444444443 24688999988765332 22210 0001334443333333444455432
Q ss_pred ccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCCCcceeEEEEEC-CeEEEecceecccCCccccccccC
Q 005655 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFL 330 (685)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~~R~g~s~~~~~-~~iyvfGG~~~~~~~~~~~~~~~~ 330 (685)
.. ...+|..|.... .....- +..+.-|-..+-. ++.|+. +.+. .
T Consensus 147 kd---------------~~~I~vVdy~d~~~~~~~~i-----~~g~~~~D~~~dpdgry~~v-a~~~------------s 193 (369)
T PF02239_consen 147 KD---------------TGEIWVVDYSDPKNLKVTTI-----KVGRFPHDGGFDPDGRYFLV-AANG------------S 193 (369)
T ss_dssp TT---------------TTEEEEEETTTSSCEEEEEE-----E--TTEEEEEE-TTSSEEEE-EEGG------------G
T ss_pred cc---------------CCeEEEEEeccccccceeee-----cccccccccccCcccceeee-cccc------------c
Confidence 21 234788875543 222221 2345556655553 444444 3332 4
Q ss_pred CcEEEEECCCCcEEEE
Q 005655 331 NELYGFQLDNHRWYPL 346 (685)
Q Consensus 331 ndl~~yd~~t~~W~~l 346 (685)
|.+-++|+.++.-..+
T Consensus 194 n~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVAL 209 (369)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred ceeEEEeeccceEEEE
Confidence 6788889888765544
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=44.44 E-value=3.8e+02 Score=27.68 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=53.2
Q ss_pred CCcEEEecCCC---CCCCcceeEEEE-ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceE
Q 005655 110 KQEWKVISSPN---SPPPRSAHQAVS-WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRM 185 (685)
Q Consensus 110 ~~~W~~l~s~~---~P~~R~~ha~v~-~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~ 185 (685)
+..|+...++. .|.|-.+.-.+. -.|.|++.||- .-+++.|+.+++.++.-- -..-+-|+.
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------------~~~y~~dlE~G~i~r~~r---GHtDYvH~v 162 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------------GVIYQVDLEDGRIQREYR---GHTDYVHSV 162 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------------eEEEEEEecCCEEEEEEc---CCcceeeee
Confidence 44677665543 344544433332 25888888873 458899999998876532 233455665
Q ss_pred EEEC-CEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 186 VLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 186 v~~~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
+.-+ +-=++-||-++ .+-++|+.|.+-.++
T Consensus 163 v~R~~~~qilsG~EDG---------tvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDG---------TVRVWDTKTQKHVSM 193 (325)
T ss_pred eecccCcceeecCCCc---------cEEEEeccccceeEE
Confidence 5532 23344555433 466778887765544
No 190
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=43.78 E-value=4.2e+02 Score=28.09 Aligned_cols=34 Identities=12% Similarity=0.443 Sum_probs=20.7
Q ss_pred cCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCC
Q 005655 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (685)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~ 257 (685)
...-.|+.+... |.++ .+.+. .+.+|++-++.+.
T Consensus 185 ~~~~ew~~l~FS-----~dGK---~iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 185 NDEAEWTDLEFS-----PDGK---SILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred CCccceeeeEEc-----CCCC---EEEEEeCCCcEEEEEccCCc
Confidence 446678888887 3332 23332 6677777777654
No 191
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=42.57 E-value=5.3e+02 Score=28.86 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=59.1
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (685)
.++|.+|+.++.=.++.. ..+...+-...-++.-++|.- +.+ -...||++|+....=+++.... ..
T Consensus 262 ~~iy~~dl~~~~~~~Lt~---~~gi~~~Ps~spdG~~ivf~S--dr~----G~p~I~~~~~~g~~~~riT~~~-----~~ 327 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTN---GFGINTSPSWSPDGSKIVFTS--DRG----GRPQIYLYDLEGSQVTRLTFSG-----GG 327 (425)
T ss_pred ccEEEEcCCCCcceeccc---CCccccCccCCCCCCEEEEEe--CCC----CCcceEEECCCCCceeEeeccC-----CC
Confidence 579999999887444433 223333433333454444431 111 1348999999988878887652 12
Q ss_pred ccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce-eEEeecC
Q 005655 236 RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVKKI 290 (685)
Q Consensus 236 Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~~~~~ 290 (685)
.+ +-...-++..++|=++... . .++..+++.+.. |..+...
T Consensus 328 ~~-~p~~SpdG~~i~~~~~~~g-----------~--~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 328 NS-NPVWSPDGDKIVFESSSGG-----------Q--WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred Cc-CccCCCCCCEEEEEeccCC-----------c--eeeEEeccCCCCcEEEcccc
Confidence 22 2222224444444334322 2 557888887665 8887653
No 192
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=42.47 E-value=14 Score=45.05 Aligned_cols=7 Identities=29% Similarity=0.809 Sum_probs=2.9
Q ss_pred cCCCceE
Q 005655 216 LDQFKWQ 222 (685)
Q Consensus 216 ~~t~~W~ 222 (685)
+-+++|+
T Consensus 1242 tCSFTWT 1248 (3015)
T KOG0943|consen 1242 TCSFTWT 1248 (3015)
T ss_pred ccceeec
Confidence 3344444
No 193
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.64 E-value=13 Score=40.03 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=4.3
Q ss_pred CCCchhHHh
Q 005655 600 PGESLKDFY 608 (685)
Q Consensus 600 ~~e~l~~f~ 608 (685)
|-.-+|.|-
T Consensus 364 p~d~y~~F~ 372 (514)
T KOG3130|consen 364 PADIYRAFV 372 (514)
T ss_pred cchhhhhhe
Confidence 444455553
No 194
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=41.31 E-value=5.5e+02 Score=28.73 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=14.2
Q ss_pred CCCCccceEEEECCEEEEEccc
Q 005655 177 PSPRSGHRMVLYKHKIIVFGGF 198 (685)
Q Consensus 177 P~~Rsgh~~v~~~~~lyv~GG~ 198 (685)
|.+..+ +.++.+.||+||-.
T Consensus 182 PD~Ivg--l~~~r~~I~~fG~~ 201 (469)
T PF11134_consen 182 PDNIVG--LAVWRREIWCFGAS 201 (469)
T ss_pred CCceEE--EEEeeeeEEEEecc
Confidence 444444 67789999999873
No 195
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=40.25 E-value=4.5e+02 Score=27.37 Aligned_cols=167 Identities=13% Similarity=0.096 Sum_probs=78.1
Q ss_pred eeEEEEECCEEEEEcCc-cCCCCCccccccCeEEEEE---CCCCcEEEcccCCCCC-------CCccceEEEECCEEEEE
Q 005655 127 AHQAVSWKNYLYIFGGE-FTSPNQERFHHYKDFWMLD---LKTNQWEQLNLKGCPS-------PRSGHRMVLYKHKIIVF 195 (685)
Q Consensus 127 ~ha~v~~~~~iyvfGG~-~~s~~~~~~~~~~dv~~yD---~~t~~W~~~~~~g~P~-------~Rsgh~~v~~~~~lyv~ 195 (685)
..++-+++++||..=-. ..+.+. +.....|+ ...+.|+.-.....|. ...-|+.+.+++.-|.+
T Consensus 77 CmSMGv~~NRLfa~iEtR~~a~~k-----m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~ 151 (367)
T PF12217_consen 77 CMSMGVVGNRLFAVIETRTVASNK-----MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAV 151 (367)
T ss_dssp -B-EEEETTEEEEEEEEEETTT-------EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEE
T ss_pred eeeeeeecceeeEEEeehhhhhhh-----hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeE
Confidence 34566789998876432 222111 22233333 4678897655433444 55678888998888888
Q ss_pred ccccCCCCceeeeceEEEEE-----cCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCce
Q 005655 196 GGFYDTLREVRYYNDLYVFD-----LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII 270 (685)
Q Consensus 196 GG~~~~~~~~~~~~dv~~yD-----~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~ 270 (685)
|=.++... .+-+. +..|. +....=..|+.. .-..-+-.++-.+++.||+.---... ...
T Consensus 152 GyHnGD~s-PRe~G-~~yfs~~~~sp~~~vrr~i~se----y~~~AsEPCvkyY~g~LyLtTRgt~~----------~~~ 215 (367)
T PF12217_consen 152 GYHNGDVS-PRELG-FLYFSDAFASPGVFVRRIIPSE----YERNASEPCVKYYDGVLYLTTRGTLP----------TNP 215 (367)
T ss_dssp EEEE-SSS-S-EEE-EEEETTTTT-TT--EEEE--GG----G-TTEEEEEEEEETTEEEEEEEES-T----------TS-
T ss_pred EeccCCCC-cceee-EEEecccccCCcceeeeechhh----hccccccchhhhhCCEEEEEEcCcCC----------CCC
Confidence 76554332 11121 22221 111222222221 12233445555669999998533221 123
Q ss_pred eeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEeccee
Q 005655 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (685)
Q Consensus 271 ~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~ 316 (685)
-+.+.+-+.....|+.+.-+.. .-....-.+.+++.|||||-.-
T Consensus 216 GS~L~rs~d~G~~w~slrfp~n--vHhtnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 216 GSSLHRSDDNGQNWSSLRFPNN--VHHTNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp --EEEEESSTTSS-EEEE-TT-----SS---EEEETTEEEEEEE-S
T ss_pred cceeeeecccCCchhhcccccc--ccccCCCceeeCCEEEEEeccc
Confidence 3456677778889999875321 1223334567799999999654
No 196
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=40.10 E-value=57 Score=22.93 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=16.3
Q ss_pred eeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 299 g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
..+.++.++++|+.+.. ..||+||++|
T Consensus 14 ~~~~~v~~g~vyv~~~d---------------g~l~ald~~t 40 (40)
T PF13570_consen 14 WSSPAVAGGRVYVGTGD---------------GNLYALDAAT 40 (40)
T ss_dssp -S--EECTSEEEEE-TT---------------SEEEEEETT-
T ss_pred CcCCEEECCEEEEEcCC---------------CEEEEEeCCC
Confidence 34557778888877652 3499999864
No 197
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=39.95 E-value=22 Score=40.61 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=14.4
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK 110 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~ 110 (685)
++.+++--|..+++-.. -....+.+||..
T Consensus 270 gd~vl~s~GiRYn~YCS-n~~RT~l~dp~~ 298 (1001)
T COG5406 270 GDVVLLSIGIRYNGYCS-NMSRTILTDPDS 298 (1001)
T ss_pred CceEEEEeeeeeccccc-cccceEEeCCch
Confidence 45555555654444211 123456677764
No 198
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=39.78 E-value=26 Score=34.72 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=7.3
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 005655 640 ARYRELKPILDELAVLEAE 658 (685)
Q Consensus 640 ~r~~e~~~~l~~~~~le~~ 658 (685)
.+||-.|..=.++++.+++
T Consensus 153 G~~YAe~~~~~~~~~~~~~ 171 (196)
T PF08229_consen 153 GQWYAERKDAKELEEFEKE 171 (196)
T ss_pred hHHHHhhhhHHHHHHHHHH
Confidence 3454444333333333333
No 199
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.57 E-value=3.8e+02 Score=28.00 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=38.5
Q ss_pred ceEEEEEcCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--ee
Q 005655 209 NDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EW 284 (685)
Q Consensus 209 ~dv~~yD~~t~--~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W 284 (685)
..+-..|+.+. .|..+ -..|.-.+++++++. +|+|-|++. +|+++.++. -|
T Consensus 33 ~~~~avd~~sG~~~We~i--------lg~RiE~sa~vvgdf-VV~GCy~g~----------------lYfl~~~tGs~~w 87 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAI--------LGVRIECSAIVVGDF-VVLGCYSGG----------------LYFLCVKTGSQIW 87 (354)
T ss_pred ceEEEecCCCCcEEeehh--------hCceeeeeeEEECCE-EEEEEccCc----------------EEEEEecchhhee
Confidence 35666777764 48765 346778888888887 777877766 788887765 57
Q ss_pred EEee
Q 005655 285 SKVK 288 (685)
Q Consensus 285 ~~~~ 288 (685)
..+.
T Consensus 88 ~f~~ 91 (354)
T KOG4649|consen 88 NFVI 91 (354)
T ss_pred eeee
Confidence 6654
No 200
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=39.54 E-value=12 Score=41.95 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=13.5
Q ss_pred cccccccccchhhcccC
Q 005655 669 TTSRKRGKKKNKNLAIK 685 (685)
Q Consensus 669 ~~~~~~~~~~~~~~~~~ 685 (685)
.-+.+|.|||.||.+||
T Consensus 788 e~s~~~a~kkqrk~~lk 804 (821)
T COG5593 788 EVSAKRAKKKQRKNMLK 804 (821)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 45778888888888876
No 201
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=39.46 E-value=25 Score=34.82 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhhhhCCCCccccccc
Q 005655 650 DELAVLEAEQKAEEAEGPETTSRKRG 675 (685)
Q Consensus 650 ~~~~~le~~~~~~~~~~~~~~~~~~~ 675 (685)
++..+-|++++++.+++.++...++.
T Consensus 166 ~~~~~~e~~~~~~~~~~~~~~~~~~~ 191 (196)
T PF08229_consen 166 EEFEKEEAEAAAAAAEKEEKKKEKKE 191 (196)
T ss_pred HHHHHHHHHHHHhhhccccccchhhh
Confidence 66666666666555444443333333
No 202
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=37.46 E-value=5.3e+02 Score=27.35 Aligned_cols=38 Identities=18% Similarity=0.039 Sum_probs=20.5
Q ss_pred EEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCeEEEecc
Q 005655 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGG 314 (685)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG 314 (685)
+-.||+...+=..+-. .+..-.|.+.+.+ .||+++.|.
T Consensus 253 cRlyDlRaD~~~a~ys---~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYS---HDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred eEEEeecCCcEEeeec---cCcccCCceeEEEcccccEEEeee
Confidence 6678877654322221 1233344444443 688877774
No 203
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.38 E-value=5.2e+02 Score=29.43 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=41.2
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.||+++-.+..-..+.... +...+++.+ .+..+.+|=.+ ..|.+||..+..=.+-.. +...+
T Consensus 198 ~vylW~~~s~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~~~-----------g~v~iwD~~~~k~~~~~~-~~h~~ 261 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG----EELVTSVKWSPDGSHLAVGTSD-----------GTVQIWDVKEQKKTRTLR-GSHAS 261 (484)
T ss_pred eEEEEecCCCceEEeEecC----CCceEEEEECCCCCEEEEeecC-----------CeEEEEehhhcccccccc-CCcCc
Confidence 4556666555544444332 344444544 35666666432 347777775443221111 00222
Q ss_pred CccceEEEECCEEEEEcccc
Q 005655 180 RSGHRMVLYKHKIIVFGGFY 199 (685)
Q Consensus 180 Rsgh~~v~~~~~lyv~GG~~ 199 (685)
|. ++..|+..++..|+..
T Consensus 262 rv--g~laW~~~~lssGsr~ 279 (484)
T KOG0305|consen 262 RV--GSLAWNSSVLSSGSRD 279 (484)
T ss_pred ee--EEEeccCceEEEecCC
Confidence 22 3567788888888864
No 204
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=36.96 E-value=2.3e+02 Score=30.49 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=32.6
Q ss_pred EEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
+-++++.+....+.- ..-+.|-+|.-++++++|-|... |.+-.||++.+
T Consensus 342 ikvW~~st~efvRtl-----~gHkRGIAClQYr~rlvVSGSSD--------------ntIRlwdi~~G 390 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTL-----NGHKRGIACLQYRDRLVVSGSSD--------------NTIRLWDIECG 390 (499)
T ss_pred EEEEeccceeeehhh-----hcccccceehhccCeEEEecCCC--------------ceEEEEecccc
Confidence 445555555554432 23456788888999999988653 55778887665
No 205
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=36.94 E-value=5.9e+02 Score=27.76 Aligned_cols=121 Identities=10% Similarity=0.081 Sum_probs=67.6
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEE-EECCEEEEEccccCCCCceeeeceEEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v-~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
..+||.-..+.. ..+.+.++|..+.+-.. . .|.+...|.+. --+..||+.-.+........-.+.|.+
T Consensus 13 ~~v~V~d~~~~~-------~~~~v~ViD~~~~~v~g--~--i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v 81 (352)
T TIGR02658 13 RRVYVLDPGHFA-------ATTQVYTIDGEAGRVLG--M--TDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEV 81 (352)
T ss_pred CEEEEECCcccc-------cCceEEEEECCCCEEEE--E--EEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEE
Confidence 457777654321 23789999998855432 2 23333333332 225689998886544333345688999
Q ss_pred EEcCCCceEE-eccCCCCCCCCCc-----cceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeE
Q 005655 214 FDLDQFKWQE-IKPRFGSMWPSPR-----SGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (685)
Q Consensus 214 yD~~t~~W~~-v~~~~~~~~P~~R-----s~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (685)
||+.+.+=.. ++.. +.|| +-+.+++. +..|||.- .+ .-+.+-++|+.+.+-.
T Consensus 82 ~D~~t~~~~~~i~~p-----~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~--------------p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 82 IDPQTHLPIADIELP-----EGPRFLVGTYPWMTSLTPDNKTLLFYQ-FS--------------PSPAVGVVDLEGKAFV 141 (352)
T ss_pred EECccCcEEeEEccC-----CCchhhccCccceEEECCCCCEEEEec-CC--------------CCCEEEEEECCCCcEE
Confidence 9999987543 3332 3334 22233333 44577652 11 1244778887776655
Q ss_pred E
Q 005655 286 K 286 (685)
Q Consensus 286 ~ 286 (685)
.
T Consensus 142 ~ 142 (352)
T TIGR02658 142 R 142 (352)
T ss_pred E
Confidence 4
No 206
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=35.85 E-value=3.4e+02 Score=30.52 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=22.5
Q ss_pred EEEcCCCcEEEecCCCCCCCcce--eEEEEE-CCEEEEEc
Q 005655 105 RYDVEKQEWKVISSPNSPPPRSA--HQAVSW-KNYLYIFG 141 (685)
Q Consensus 105 ~yd~~~~~W~~l~s~~~P~~R~~--ha~v~~-~~~iyvfG 141 (685)
++.|.-+.|..+.....-.-.++ |+++.. ++.||..|
T Consensus 90 ~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG 129 (476)
T COG5184 90 VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWG 129 (476)
T ss_pred ccCceecCcccccceeeEEeecCCceEEeecCCCCEEEec
Confidence 57777776664333222223444 777665 67899999
No 207
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.80 E-value=5.3e+02 Score=26.94 Aligned_cols=91 Identities=16% Similarity=0.324 Sum_probs=54.6
Q ss_pred ccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC--ceEEeccCCC
Q 005655 154 HYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFG 229 (685)
Q Consensus 154 ~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~ 229 (685)
|...+-..|+.++. |+.+-. .|.-.+++++++. +|+|=+ ...+|.++..|. -|..+...
T Consensus 31 Hs~~~~avd~~sG~~~We~ilg-----~RiE~sa~vvgdf-VV~GCy---------~g~lYfl~~~tGs~~w~f~~~~-- 93 (354)
T KOG4649|consen 31 HSGIVIAVDPQSGNLIWEAILG-----VRIECSAIVVGDF-VVLGCY---------SGGLYFLCVKTGSQIWNFVILE-- 93 (354)
T ss_pred CCceEEEecCCCCcEEeehhhC-----ceeeeeeEEECCE-EEEEEc---------cCcEEEEEecchhheeeeeehh--
Confidence 44567788888874 887643 6877777888888 455543 345777777765 46655432
Q ss_pred CCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 230 SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
.-... +.+...+.++..|-.++. +|.+|+.+.
T Consensus 94 ----~vk~~-a~~d~~~glIycgshd~~----------------~yalD~~~~ 125 (354)
T KOG4649|consen 94 ----TVKVR-AQCDFDGGLIYCGSHDGN----------------FYALDPKTY 125 (354)
T ss_pred ----hhccc-eEEcCCCceEEEecCCCc----------------EEEeccccc
Confidence 11111 222235555555655544 777777654
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=35.11 E-value=5.9e+02 Score=30.05 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=33.7
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEE-ecCCCCCCCcceeEEEEECCEEEEEcCcc
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~-l~s~~~P~~R~~ha~v~~~~~iyvfGG~~ 144 (685)
+-|-++.-|. +..|+|..| +.+++||+..+.--+ +.. . .--....+-+.+|+.|..||.+
T Consensus 14 ci~d~afkPD-GsqL~lAAg-----------~rlliyD~ndG~llqtLKg-H--KDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAFKPD-GTQLILAAG-----------SRLLVYDTSDGTLLQPLKG-H--KDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred chheeEECCC-CceEEEecC-----------CEEEEEeCCCccccccccc-c--cceEEEEEEccCCceeccCCCc
Confidence 4455666664 567888777 478999998774321 110 0 0011111112278888888853
No 209
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=35.01 E-value=19 Score=36.71 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=9.0
Q ss_pred CCCccceeEEEe-CCEEEEEe
Q 005655 233 PSPRSGFQFFVY-QDEVFLYG 252 (685)
Q Consensus 233 P~~Rs~~s~~~~-~~~Iyv~G 252 (685)
|.+-+-++.+-. +|.+|+|-
T Consensus 44 PLANSrYATVre~~g~~yLym 64 (303)
T KOG3064|consen 44 PLANSRYATVREENGVLYLYM 64 (303)
T ss_pred cCccccceeEeecCCEEEEEE
Confidence 333333333333 55666653
No 210
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=34.85 E-value=3.9e+02 Score=29.94 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=61.9
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEc-CccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFG-GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfG-G~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
-++|.||..+.+-.+++... ....+-...-+|+-+||. .... ...+|++|+....=+++...+ ..
T Consensus 262 ~~iy~~dl~~~~~~~Lt~~~---gi~~~Ps~spdG~~ivf~Sdr~G---------~p~I~~~~~~g~~~~riT~~~--~~ 327 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTNGF---GINTSPSWSPDGSKIVFTSDRGG---------RPQIYLYDLEGSQVTRLTFSG--GG 327 (425)
T ss_pred ccEEEEcCCCCcceecccCC---ccccCccCCCCCCEEEEEeCCCC---------CcceEEECCCCCceeEeeccC--CC
Confidence 47999999988755555432 333333333344434443 2211 247999999998888877632 12
Q ss_pred CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc-eEEeccCCC
Q 005655 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPRFG 229 (685)
Q Consensus 180 Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~~~ 229 (685)
.+ +-...-++..++|=+... + -.++..+|+.+.. |..+.....
T Consensus 328 ~~-~p~~SpdG~~i~~~~~~~-g-----~~~i~~~~~~~~~~~~~lt~~~~ 371 (425)
T COG0823 328 NS-NPVWSPDGDKIVFESSSG-G-----QWDIDKNDLASGGKIRILTSTYL 371 (425)
T ss_pred Cc-CccCCCCCCEEEEEeccC-C-----ceeeEEeccCCCCcEEEcccccc
Confidence 22 333334555555544321 1 1578889988776 888776533
No 211
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=34.63 E-value=4.9e+02 Score=32.72 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=56.8
Q ss_pred cCeEEEEECCCCcEEEcccCCC--CCCCccceEEEEC------CEEEEEccccCCCCceeeeceEEEEEcCC-CceEEec
Q 005655 155 YKDFWMLDLKTNQWEQLNLKGC--PSPRSGHRMVLYK------HKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEIK 225 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~--P~~Rsgh~~v~~~------~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v~ 225 (685)
...+++|+...+.|..+..... .....|+++|+.+ .- +|+|--....+...--..||+|=-.. ..|..-.
T Consensus 295 ~G~v~if~~~~~~~~~~~~~~GeQ~GSYFG~sl~~vDlNgDG~tD-LLVGAP~y~~~~~~e~GrVYVy~~~~~~~~~~~~ 373 (1030)
T KOG3637|consen 295 GGKVYIFQLSGKSLRPLQVLRGEQIGSYFGYSLAAVDLNGDGLTD-LLVGAPLYFERDRYEVGRVYVYLNGGLGLFPEQI 373 (1030)
T ss_pred ccEEEEEeccccccceeeeeeeeeehhhcCeeEEEEEcCCCCCcc-eEEecCccccCCCCcceEEEEEEecCCCCcccce
Confidence 4789999999888888765221 5667788887762 12 33333111111111234677774333 2222222
Q ss_pred cCCCCCCCCCccceeEEEe-------------------C--CEEEEEecccCC
Q 005655 226 PRFGSMWPSPRSGFQFFVY-------------------Q--DEVFLYGGYSKE 257 (685)
Q Consensus 226 ~~~~~~~P~~Rs~~s~~~~-------------------~--~~Iyv~GG~~~~ 257 (685)
.......|..|+|.+++.+ + |.+|||=|....
T Consensus 374 ~L~~~~~~~~RFG~Ala~LGDlN~DG~nDVAVGAP~eg~~~GaVYIy~Gs~~G 426 (1030)
T KOG3637|consen 374 TLRGPGGPSGRFGSALAALGDLNQDGYNDVAVGAPFEGDNQGAVYIYHGSKGG 426 (1030)
T ss_pred eEecCCCcccchhhhhhcccCcccCCCCceEEeCCcCCCCCceEEEEcCCCCC
Confidence 1111122677999988764 2 679999877554
No 212
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.61 E-value=2.7e+02 Score=28.15 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=61.7
Q ss_pred ceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCccc
Q 005655 183 HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262 (685)
Q Consensus 183 h~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~ 262 (685)
.+....++.||.--|..+ ...+.++|+.+.+=..-...+ |..-+|-+.+.+++.+|++--..+.
T Consensus 49 QGL~~~~g~i~esTG~yg-------~S~ir~~~L~~gq~~~s~~l~----~~~~FgEGit~~gd~~y~LTw~egv----- 112 (262)
T COG3823 49 QGLEYLDGHILESTGLYG-------FSKIRVSDLTTGQEIFSEKLA----PDTVFGEGITKLGDYFYQLTWKEGV----- 112 (262)
T ss_pred cceeeeCCEEEEeccccc-------cceeEEEeccCceEEEEeecC----CccccccceeeccceEEEEEeccce-----
Confidence 345667888999888765 467899999876533333331 3345677778889999998766555
Q ss_pred CCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecce
Q 005655 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (685)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (685)
.+.||+.+.. .+ +..+-.--|-+.+.-+..+++--|.
T Consensus 113 -----------af~~d~~t~~--~l---g~~~y~GeGWgLt~d~~~LimsdGs 149 (262)
T COG3823 113 -----------AFKYDADTLE--EL---GRFSYEGEGWGLTSDDKNLIMSDGS 149 (262)
T ss_pred -----------eEEEChHHhh--hh---cccccCCcceeeecCCcceEeeCCc
Confidence 5567655422 11 1122233455566556666665554
No 213
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.57 E-value=5.4e+02 Score=26.63 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=29.7
Q ss_pred CCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCC-cEEEEEe
Q 005655 280 RTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLEL 348 (685)
Q Consensus 280 ~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-~W~~l~~ 348 (685)
....|+.---. ..|.+....+-..-++.|-|-||. |.|.+|-.... +|..+..
T Consensus 243 e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~Gd---------------Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 243 EYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGD---------------NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ccCcccccccc-cCCcceEEEEEeccccEEEEecCC---------------cEEEEEEeCCCCcEEEccc
Confidence 34456543221 134444444555556666677775 34667766644 8988765
No 214
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=34.52 E-value=13 Score=35.19 Aligned_cols=6 Identities=17% Similarity=0.462 Sum_probs=2.7
Q ss_pred EEecce
Q 005655 310 LLFGGV 315 (685)
Q Consensus 310 yvfGG~ 315 (685)
|+||..
T Consensus 5 ~~wGce 10 (149)
T PF03066_consen 5 YFWGCE 10 (149)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444443
No 215
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=34.29 E-value=20 Score=35.64 Aligned_cols=12 Identities=8% Similarity=0.507 Sum_probs=7.6
Q ss_pred hhhhhhccCCCC
Q 005655 504 ESEWVEASEGED 515 (685)
Q Consensus 504 ~~~w~~~~~~~~ 515 (685)
+..|+++++..+
T Consensus 231 lekWl~~~~~~~ 242 (303)
T COG5129 231 LEKWLGSDQSME 242 (303)
T ss_pred HHHHhccccchh
Confidence 456998765533
No 216
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=33.63 E-value=3.4e+02 Score=28.87 Aligned_cols=71 Identities=24% Similarity=0.344 Sum_probs=40.6
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEE--EEE--CCEEEEEcCccCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQA--VSW--KNYLYIFGGEFTSPN 148 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~--v~~--~~~iyvfGG~~~s~~ 148 (685)
++..+| .+.++++|-. .+.+..||+.+-+.- .+.+ |......++ |.+ .+.|||.|...+
T Consensus 221 siSfHP--sGefllvgTd---------Hp~~rlYdv~T~Qcf--vsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG--- 283 (430)
T KOG0640|consen 221 SISFHP--SGEFLLVGTD---------HPTLRLYDVNTYQCF--VSAN-PDDQHTGAITQVRYSSTGSLYVTASKDG--- 283 (430)
T ss_pred eEeecC--CCceEEEecC---------CCceeEEeccceeEe--eecC-cccccccceeEEEecCCccEEEEeccCC---
Confidence 455666 5677777763 245778888765443 3333 222222222 223 489999987644
Q ss_pred CccccccCeEEEEECCCCcE
Q 005655 149 QERFHHYKDFWMLDLKTNQW 168 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W 168 (685)
.+-+||-.++..
T Consensus 284 --------~IklwDGVS~rC 295 (430)
T KOG0640|consen 284 --------AIKLWDGVSNRC 295 (430)
T ss_pred --------cEEeeccccHHH
Confidence 355677666654
No 217
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.78 E-value=6.3e+02 Score=26.90 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=54.4
Q ss_pred EEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCcccc
Q 005655 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153 (685)
Q Consensus 74 ~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~ 153 (685)
+...|. +++||+--+ +|.. -=-||..|..++.-+.+...+.+. .+.+.+..+| |...- ..
T Consensus 111 IlYdP~-~D~LLlAR~---DGh~---nLGvy~ldr~~g~~~~L~~~ps~K-----G~~~~D~a~F---~i~~~-----~~ 170 (339)
T PF09910_consen 111 ILYDPY-EDRLLLARA---DGHA---NLGVYSLDRRTGKAEKLSSNPSLK-----GTLVHDYACF---GINNF-----HK 170 (339)
T ss_pred eeeCCC-cCEEEEEec---CCcc---eeeeEEEcccCCceeeccCCCCcC-----ceEeeeeEEE---ecccc-----cc
Confidence 344554 377777655 3432 125788888888888886643332 2223232222 21111 11
Q ss_pred ccCeEEEEECCCCcE--EEcccCC----C-CCCCccceEEEECCEEEEE
Q 005655 154 HYKDFWMLDLKTNQW--EQLNLKG----C-PSPRSGHRMVLYKHKIIVF 195 (685)
Q Consensus 154 ~~~dv~~yD~~t~~W--~~~~~~g----~-P~~Rsgh~~v~~~~~lyv~ 195 (685)
-.+.+.+||+.+++| +..+... . ...|..-.|+...+++|.|
T Consensus 171 g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 171 GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred CCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 257899999999999 4443211 1 1223333455556666665
No 218
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=32.64 E-value=26 Score=42.69 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=18.2
Q ss_pred chhHHhhccHHHHHHHHHhcCCCC---cchhhHhhHHHHHH
Q 005655 603 SLKDFYRRTSMYWQMAAHEHTQHT---GKELRKDGFDLAEA 640 (685)
Q Consensus 603 ~l~~f~~rt~~~w~~~~~~~~~~~---~k~l~~~~f~la~~ 640 (685)
.|..||.=--.|..-++....... .-.|-+.=|+||..
T Consensus 465 Kl~~f~~vLlq~i~~la~~~~~~~~~~ld~L~~~L~~Laq~ 505 (840)
T PF04147_consen 465 KLQVFFGVLLQHILYLASQDSPPPFEVLDSLIPHLYDLAQK 505 (840)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHH
Confidence 455666555555544443331111 12445555666654
No 219
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=32.46 E-value=25 Score=44.77 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=3.6
Q ss_pred CCeEEEecc
Q 005655 306 KKRALLFGG 314 (685)
Q Consensus 306 ~~~iyvfGG 314 (685)
+|.+|..|+
T Consensus 71 ~g~~y~~~~ 79 (2849)
T PTZ00415 71 NGGIYNLGD 79 (2849)
T ss_pred CCCEEeccC
Confidence 334444443
No 220
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=32.35 E-value=8e+02 Score=27.97 Aligned_cols=97 Identities=12% Similarity=0.203 Sum_probs=51.6
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-C--CEEEEEccccCCCCceeeece
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K--HKIIVFGGFYDTLREVRYYND 210 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~--~~lyv~GG~~~~~~~~~~~~d 210 (685)
...|+..||-... ..+-.+|+.++.=... +...+.-+...| + +.|+.-.|+.. ++
T Consensus 355 q~~lLAsGGGs~D---------~~i~fwn~~~g~~i~~-----vdtgsQVcsL~Wsk~~kEi~sthG~s~--------n~ 412 (484)
T KOG0305|consen 355 QSGLLATGGGSAD---------RCIKFWNTNTGARIDS-----VDTGSQVCSLIWSKKYKELLSTHGYSE--------NQ 412 (484)
T ss_pred ccCceEEcCCCcc---------cEEEEEEcCCCcEecc-----cccCCceeeEEEcCCCCEEEEecCCCC--------Cc
Confidence 5678888885433 3455667665543221 334444455555 3 34888778743 45
Q ss_pred EEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC
Q 005655 211 LYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 211 v~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
|.+|+..+. ..+..+.+ ...|..|-+..-++.-++.|+.+..
T Consensus 413 i~lw~~ps~--~~~~~l~g---H~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 413 ITLWKYPSM--KLVAELLG---HTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred EEEEecccc--ceeeeecC---CcceeEEEEECCCCCEEEEecccCc
Confidence 555544441 12222211 3455555555557777777776654
No 221
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=31.77 E-value=30 Score=39.92 Aligned_cols=6 Identities=50% Similarity=1.094 Sum_probs=3.8
Q ss_pred hhhhcc
Q 005655 506 EWVEAS 511 (685)
Q Consensus 506 ~w~~~~ 511 (685)
||.++.
T Consensus 526 EWEEEe 531 (811)
T KOG4364|consen 526 EWEEEE 531 (811)
T ss_pred cccccC
Confidence 687663
No 222
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=30.81 E-value=5.8e+02 Score=25.88 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC------------CEEEEE
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK------------NYLYIF 140 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~------------~~iyvf 140 (685)
++.+.| .+.||.+|- .+.+.+...-|....+|.+|.++..+ +.||..
T Consensus 37 av~fhp--~g~lyavgs-------------------nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~ 95 (350)
T KOG0641|consen 37 AVAFHP--AGGLYAVGS-------------------NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCT 95 (350)
T ss_pred eEEecC--CCceEEecc-------------------CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEE
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-----------------CCEEEEEccccCCCC
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-----------------KHKIIVFGGFYDTLR 203 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-----------------~~~lyv~GG~~~~~~ 203 (685)
.-. ....+..--.....-..++.......-.||-+-.- ++.|.+-||
T Consensus 96 ~ws----------~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g------ 159 (350)
T KOG0641|consen 96 AWS----------PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG------ 159 (350)
T ss_pred Eec----------CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC------
Q ss_pred ceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC
Q 005655 204 EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (685)
Q Consensus 204 ~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (685)
..++-+|-+....=+-+... ....||-++.+ ++.+|+.|...+. +-++|+.-
T Consensus 160 ----agdc~iy~tdc~~g~~~~a~------sghtghilalyswn~~m~~sgsqdkt----------------irfwdlrv 213 (350)
T KOG0641|consen 160 ----AGDCKIYITDCGRGQGFHAL------SGHTGHILALYSWNGAMFASGSQDKT----------------IRFWDLRV 213 (350)
T ss_pred ----CCcceEEEeecCCCCcceee------cCCcccEEEEEEecCcEEEccCCCce----------------EEEEeeec
Q ss_pred ceeEEeecCCCCCCCcceeEEEEE----CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 282 WEWSKVKKIGMPPGPRAGFSMCVH----KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 282 ~~W~~~~~~g~~P~~R~g~s~~~~----~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
+.-...-.....-...-..+.+.+ .+++++-|-.... +..||+..++-.+
T Consensus 214 ~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss--------------c~lydirg~r~iq 267 (350)
T KOG0641|consen 214 NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS--------------CMLYDIRGGRMIQ 267 (350)
T ss_pred cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc--------------eEEEEeeCCceee
No 223
>smart00284 OLF Olfactomedin-like domains.
Probab=30.64 E-value=6.3e+02 Score=26.21 Aligned_cols=155 Identities=10% Similarity=0.138 Sum_probs=78.3
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE---EecCC----CCCCCcceeE---EEEECC
Q 005655 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK---VISSP----NSPPPRSAHQ---AVSWKN 135 (685)
Q Consensus 66 P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~---~l~s~----~~P~~R~~ha---~v~~~~ 135 (685)
|.+=.|...++. ++.||.--. ..+.+.+||+.+.+-. .++.. ..|-...+++ .++-.+
T Consensus 71 p~~~~GtG~VVY---ngslYY~~~---------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~ 138 (255)
T smart00284 71 PHAGQGTGVVVY---NGSLYFNKF---------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDEN 138 (255)
T ss_pred CCccccccEEEE---CceEEEEec---------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCC
Confidence 444445555555 455554332 2367999999998654 33311 0111111222 233345
Q ss_pred EEEEEcCccCCCCCccccccCeEEEEECCCC----cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceE
Q 005655 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTN----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 136 ~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~----~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
-|||+=....+... --+-++|+.|- +|..- .+....+ .++++=+.||++-..... -..-.
T Consensus 139 GLWvIYat~~~~g~------ivvSkLnp~tL~ve~tW~T~----~~k~sa~-naFmvCGvLY~~~s~~~~-----~~~I~ 202 (255)
T smart00284 139 GLWVIYATEQNAGK------IVISKLNPATLTIENTWITT----YNKRSAS-NAFMICGILYVTRSLGSK-----GEKVF 202 (255)
T ss_pred ceEEEEeccCCCCC------EEEEeeCcccceEEEEEEcC----CCccccc-ccEEEeeEEEEEccCCCC-----CcEEE
Confidence 66666332222110 12346677654 56642 3444444 445556788888542211 12346
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccceeEEEe---CCEEEEEe
Q 005655 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYG 252 (685)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~---~~~Iyv~G 252 (685)
+.||+.+.+=..+..+ .+.+-..++++-+ +.+||++-
T Consensus 203 yayDt~t~~~~~~~i~----f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 203 YAYDTNTGKEGHLDIP----FENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred EEEECCCCccceeeee----eccccccceeceeCCCCCeEEEEe
Confidence 8899988764433322 2334444555544 77888873
No 224
>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]
Probab=30.61 E-value=4.6e+02 Score=29.78 Aligned_cols=64 Identities=22% Similarity=0.362 Sum_probs=38.0
Q ss_pred ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEE---EcccCCCCCCCccceEEEE---CCEEEEEccccCCCCcee
Q 005655 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVR 206 (685)
Q Consensus 133 ~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~---~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~ 206 (685)
..+.||+|.| +.+|+|.-.+.... .+...+.-.++..+.++++ .+++|+|-|
T Consensus 343 ~~~~~~ffkg-------------~~~w~~~~~~~~~gypr~l~~~~~~~~~~~idaa~~~~~~~kt~ff~g--------- 400 (469)
T KOG1565|consen 343 WDGKIYFFKG-------------AQFWSYAGYTLVPGYPKKLYRSVGFPPRGRIDAARFWPANGKTYFFSG--------- 400 (469)
T ss_pred ccCcEEEecC-------------CeeEEEecccccCCCCcchhhccccCCCCceeeeEeccCCCceEEEec---------
Confidence 5688999988 34788877665542 2222111112222555544 578999988
Q ss_pred eeceEEEEEcCCCc
Q 005655 207 YYNDLYVFDLDQFK 220 (685)
Q Consensus 207 ~~~dv~~yD~~t~~ 220 (685)
+..|.||...+.
T Consensus 401 --~~~wr~d~~~~~ 412 (469)
T KOG1565|consen 401 --RRYWRYDEKSRA 412 (469)
T ss_pred --ceeeeehhhhcc
Confidence 356788776654
No 225
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=30.61 E-value=3.5e+02 Score=28.97 Aligned_cols=103 Identities=8% Similarity=0.090 Sum_probs=54.6
Q ss_pred ccEEEEEcCCCc-EEEecCCCCCC-CcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEEC-CCCcEEEcccCCCC
Q 005655 101 GDLYRYDVEKQE-WKVISSPNSPP-PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTNQWEQLNLKGCP 177 (685)
Q Consensus 101 ndv~~yd~~~~~-W~~l~s~~~P~-~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~-~t~~W~~~~~~g~P 177 (685)
+++.+|.-..+. |..+.....-. .-.+-..+...++|. .++.. +.-|++.. ..++|.+...
T Consensus 32 ~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~d-----------rnayVw~~~~~~~Wkptlv---- 95 (361)
T KOG1523|consen 32 HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHD-----------RNAYVWTQPSGGTWKPTLV---- 95 (361)
T ss_pred ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCC-----------CCccccccCCCCeecccee----
Confidence 589999988888 98765432111 111111111124443 34332 22334444 6788986543
Q ss_pred CCCccceEEEE----CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 178 SPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 178 ~~Rsgh~~v~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
.-|.+-++..+ +...|++|+-. .+-.|+.|.-+++=|..-..
T Consensus 96 LlRiNrAAt~V~WsP~enkFAVgSga-------r~isVcy~E~ENdWWVsKhi 141 (361)
T KOG1523|consen 96 LLRINRAATCVKWSPKENKFAVGSGA-------RLISVCYYEQENDWWVSKHI 141 (361)
T ss_pred EEEeccceeeEeecCcCceEEeccCc-------cEEEEEEEecccceehhhhh
Confidence 34555444443 44555555521 36788899887776654433
No 226
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.39 E-value=7.9e+02 Score=27.30 Aligned_cols=61 Identities=13% Similarity=0.300 Sum_probs=35.4
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCC---cEEEcccCCCCCCCcc-ceEEEECCEEEEEccccCCCCceeeec
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKGCPSPRSG-HRMVLYKHKIIVFGGFYDTLREVRYYN 209 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~---~W~~~~~~g~P~~Rsg-h~~v~~~~~lyv~GG~~~~~~~~~~~~ 209 (685)
++.-+|.|+-. ..+..+|+..+ .|+-+.. |+.. .+++.-+.++|+++- -.
T Consensus 323 Dg~~~V~Gs~d-----------r~i~~wdlDgn~~~~W~gvr~-----~~v~dlait~Dgk~vl~v~~----------d~ 376 (519)
T KOG0293|consen 323 DGFRFVTGSPD-----------RTIIMWDLDGNILGNWEGVRD-----PKVHDLAITYDGKYVLLVTV----------DK 376 (519)
T ss_pred CCceeEecCCC-----------CcEEEecCCcchhhccccccc-----ceeEEEEEcCCCcEEEEEec----------cc
Confidence 56678888753 34667777654 5876654 4443 334444557777762 23
Q ss_pred eEEEEEcCCCc
Q 005655 210 DLYVFDLDQFK 220 (685)
Q Consensus 210 dv~~yD~~t~~ 220 (685)
.+..|+..+..
T Consensus 377 ~i~l~~~e~~~ 387 (519)
T KOG0293|consen 377 KIRLYNREARV 387 (519)
T ss_pred ceeeechhhhh
Confidence 45666665543
No 227
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=30.14 E-value=57 Score=38.42 Aligned_cols=9 Identities=33% Similarity=0.542 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 005655 650 DELAVLEAE 658 (685)
Q Consensus 650 ~~~~~le~~ 658 (685)
+++.+|--.
T Consensus 268 ~eV~rl~~~ 276 (622)
T PF02724_consen 268 DEVSRLNPS 276 (622)
T ss_pred HHHHhcCCc
Confidence 455555433
No 228
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=29.68 E-value=2.5e+02 Score=32.02 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=30.6
Q ss_pred eeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC
Q 005655 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 206 ~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
.+++.|+.+|+.+..=-.-.+. ....+.++....+.+++++|+++.
T Consensus 372 ~~ls~LvllD~~tg~~l~~S~~------~~Ir~r~~~~~~~~~vaI~g~~G~ 417 (489)
T PF05262_consen 372 HYLSELVLLDSDTGDTLKRSPV------NGIRGRTFYEREDDLVAIAGCSGN 417 (489)
T ss_pred CcceeEEEEeCCCCceeccccc------ceeccceeEEcCCCEEEEeccCCc
Confidence 3688999999998753333222 233345566678889999998554
No 229
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=29.23 E-value=45 Score=27.11 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=19.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhh
Q 005655 639 EARYRELKPILDELAVLEAEQKA 661 (685)
Q Consensus 639 ~~r~~e~~~~l~~~~~le~~~~~ 661 (685)
-.|+..+|+.-++|+++++++++
T Consensus 28 a~r~~~l~~~~e~~Rei~a~eKa 50 (81)
T KOG4326|consen 28 AFRLRQLREYHEDIREIDAHEKA 50 (81)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 45788889999999999988876
No 230
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=28.02 E-value=1.2e+02 Score=33.47 Aligned_cols=120 Identities=18% Similarity=0.333 Sum_probs=60.3
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC----cEE--EecCCCCCCCcceeEEEEEC-CEEEEEcCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ----EWK--VISSPNSPPPRSAHQAVSWK-NYLYIFGGE 143 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~----~W~--~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~ 143 (685)
|+|...+|+.+|.++=+|-. +|.. .+-.||+..- +-. .+..--+|.-+-+|+...-. ..|+.+--
T Consensus 472 GfS~YLHpigen~~lGvG~~--~g~v-----KiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPa- 543 (603)
T COG4880 472 GFSEYLHPIGENRLLGVGAY--QGGV-----KISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPA- 543 (603)
T ss_pred CchhhccccCCCcEEEeecc--cCCc-----eEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecc-
Confidence 77888888866777766653 2322 2344554321 000 11111134555566655443 33443321
Q ss_pred cCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEE
Q 005655 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (685)
Q Consensus 144 ~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (685)
+..-++|-...+. ++--. .-...-.-++..+++++|+||| +.+|.|| .+.|+.
T Consensus 544 -----------y~~gyif~iedg~--kl~k~-~e~k~na~RA~fi~dylY~vg~-----------~ev~~ld--enswe~ 596 (603)
T COG4880 544 -----------YLGGYIFFIEDGS--KLRKR-AERKLNADRAFFIKDYLYLVGG-----------NEVWKLD--ENSWEV 596 (603)
T ss_pred -----------cCccEEEEEecCc--eeeeh-hhhcccceeeEEecceEEEecc-----------ceeEEec--cchHhh
Confidence 1223355555551 11110 0111122356778999999999 5688886 456776
Q ss_pred ec
Q 005655 224 IK 225 (685)
Q Consensus 224 v~ 225 (685)
+.
T Consensus 597 Vg 598 (603)
T COG4880 597 VG 598 (603)
T ss_pred hh
Confidence 54
No 231
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=28.00 E-value=34 Score=43.68 Aligned_cols=10 Identities=40% Similarity=0.547 Sum_probs=3.9
Q ss_pred EEEcCeeecc
Q 005655 467 YVYGGMMEIN 476 (685)
Q Consensus 467 yi~GG~~e~g 476 (685)
|-.-|.-+.|
T Consensus 116 y~~~g~~~~~ 125 (2849)
T PTZ00415 116 YPIHGKAEIG 125 (2849)
T ss_pred eeccchhhcC
Confidence 3333443333
No 232
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.28 E-value=44 Score=32.12 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.6
Q ss_pred CCCCCcce
Q 005655 450 KPCGRINS 457 (685)
Q Consensus 450 ~P~~R~n~ 457 (685)
+|..|..+
T Consensus 164 ~~s~~~~~ 171 (227)
T KOG3241|consen 164 FPSTSLEE 171 (227)
T ss_pred ccchhHHH
Confidence 45544333
No 233
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=27.25 E-value=5.3e+02 Score=24.26 Aligned_cols=88 Identities=14% Similarity=0.193 Sum_probs=50.9
Q ss_pred EEECCEEEEEccccCCCCceeeeceEEEEEcCCCce-EEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccC
Q 005655 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKN 263 (685)
Q Consensus 186 v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~ 263 (685)
|.++|.+|=++-...... ..-+..||+.+.+. ..++.+... ........+.++ +++|.++--...
T Consensus 2 V~vnG~~hW~~~~~~~~~----~~~IlsFDl~~E~F~~~~~lP~~~--~~~~~~~~L~~v~~~~L~~~~~~~~------- 68 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE----KDFILSFDLSTEKFGRSLPLPFCN--DDDDDSVSLSVVRGDCLCVLYQCDE------- 68 (164)
T ss_pred EEECCEEEeeEEecCCCC----ceEEEEEeccccccCCEECCCCcc--CccCCEEEEEEecCCEEEEEEeccC-------
Confidence 567888887766543211 11689999999999 555544211 111222333233 677877733211
Q ss_pred CCCCCceeeeEEEEeC---CCceeEEeecCC
Q 005655 264 QSEKGIIHSDLWSLDP---RTWEWSKVKKIG 291 (685)
Q Consensus 264 ~~~~~~~~~dv~~yd~---~t~~W~~~~~~g 291 (685)
...-++|+.+- ...+|+++-...
T Consensus 69 -----~~~~~IWvm~~~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 69 -----TSKIEIWVMKKYGYGKESWTKLFTID 94 (164)
T ss_pred -----CccEEEEEEeeeccCcceEEEEEEEe
Confidence 22367898872 377999986543
No 234
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.13 E-value=1.1e+03 Score=28.03 Aligned_cols=31 Identities=19% Similarity=0.494 Sum_probs=19.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK 114 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~ 114 (685)
.+.+.| .+.|+-.||. + +.+-++|...+.-.
T Consensus 110 ~ma~~~--~g~LlAtgga--D-------~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 110 TMAFDP--TGTLLATGGA--D-------GRVKVWDIKNGYCT 140 (775)
T ss_pred EEEEcC--CCceEEeccc--c-------ceEEEEEeeCCEEE
Confidence 455666 4688888884 2 34566677666444
No 235
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=26.95 E-value=8.3e+02 Score=26.44 Aligned_cols=173 Identities=17% Similarity=0.234 Sum_probs=86.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
+..||++......|. -..|.+|+..++...+.....|..--.|.++--++++ ||.. .|+.+.+-+
T Consensus 51 ~~~LY~v~~~~~~gg-----vaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~-vf~A---------nY~~g~v~v 115 (346)
T COG2706 51 QRHLYVVNEPGEEGG-----VAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRF-VFVA---------NYHSGSVSV 115 (346)
T ss_pred CCEEEEEEecCCcCc-----EEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCE-EEEE---------EccCceEEE
Confidence 357888776311121 1346667776787766433221111123333333433 3332 134566667
Q ss_pred EECCCC--cEEEccc---CC-CCCCC--ccce--E-EEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 161 LDLKTN--QWEQLNL---KG-CPSPR--SGHR--M-VLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 161 yD~~t~--~W~~~~~---~g-~P~~R--sgh~--~-v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
|-+..+ -|..+.. .+ .|.+| +.|+ + ..- +++|++. +.+ .+.+..|++....-+......
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~----DLG-----~Dri~~y~~~dg~L~~~~~~~ 186 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP----DLG-----TDRIFLYDLDDGKLTPADPAE 186 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe----ecC-----CceEEEEEcccCccccccccc
Confidence 766542 2332211 11 24456 2222 2 112 3455554 111 467888888866554443321
Q ss_pred CCCCCCCccce-eEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC
Q 005655 229 GSMWPSPRSGF-QFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG 295 (685)
Q Consensus 229 ~~~~P~~Rs~~-s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~ 295 (685)
+ .+-+|. .++.+ +..+|++.-.+.. -++|.|++.....+.++....+|.
T Consensus 187 ---v-~~G~GPRHi~FHpn~k~aY~v~EL~st--------------V~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 187 ---V-KPGAGPRHIVFHPNGKYAYLVNELNST--------------VDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred ---c-CCCCCcceEEEcCCCcEEEEEeccCCE--------------EEEEEEcCCCceEEEeeeeccCcc
Confidence 1 112222 23333 5568888766543 458889988889999887666664
No 236
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=26.55 E-value=76 Score=37.39 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 005655 653 AVLEAEQ 659 (685)
Q Consensus 653 ~~le~~~ 659 (685)
..|+.+-
T Consensus 264 ~~L~~eV 270 (622)
T PF02724_consen 264 PLLQDEV 270 (622)
T ss_pred HHHHHHH
Confidence 3444443
No 237
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=26.39 E-value=6.1e+02 Score=30.15 Aligned_cols=11 Identities=27% Similarity=0.311 Sum_probs=8.9
Q ss_pred CCeEEEeccee
Q 005655 306 KKRALLFGGVV 316 (685)
Q Consensus 306 ~~~iyvfGG~~ 316 (685)
+|.+++.||..
T Consensus 630 dg~vLasgg~D 640 (707)
T KOG0263|consen 630 DGNVLASGGAD 640 (707)
T ss_pred CCCEEEecCCC
Confidence 78888888864
No 238
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=25.69 E-value=9.6e+02 Score=26.70 Aligned_cols=143 Identities=13% Similarity=0.223 Sum_probs=70.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
++++..| ++.|++.||.. .+..| +|+.+..-.-+-... .+.-+++..- +|+.+..||.+..
T Consensus 307 ~~iaf~~--DGSL~~tGGlD-------~~~Rv--WDlRtgr~im~L~gH---~k~I~~V~fsPNGy~lATgs~Dnt---- 368 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLD-------SLGRV--WDLRTGRCIMFLAGH---IKEILSVAFSPNGYHLATGSSDNT---- 368 (459)
T ss_pred ceeEecC--CCceeeccCcc-------chhhe--eecccCcEEEEeccc---ccceeeEeECCCceEEeecCCCCc----
Confidence 5566666 78999999952 22334 477776544222211 1222333333 6888888886432
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
..||-+-.... +.. +|.-+.--+-|.+ .+++.+-+|++. .+-+|. +..|+.+..+
T Consensus 369 -----~kVWDLR~r~~----ly~--ipAH~nlVS~Vk~~p~~g~fL~TasyD~---------t~kiWs--~~~~~~~ksL 426 (459)
T KOG0272|consen 369 -----CKVWDLRMRSE----LYT--IPAHSNLVSQVKYSPQEGYFLVTASYDN---------TVKIWS--TRTWSPLKSL 426 (459)
T ss_pred -----EEEeeeccccc----cee--cccccchhhheEecccCCeEEEEcccCc---------ceeeec--CCCcccchhh
Confidence 33444433222 222 2322222222222 467777777643 333332 4557777665
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEecccCC
Q 005655 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
-+ ...+.-..-...++..++.++++..
T Consensus 427 aG---He~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 427 AG---HEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred cC---CccceEEEEeccCCceEEEeccCce
Confidence 22 1222222222236667777776543
No 239
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=25.13 E-value=7.8e+02 Score=28.19 Aligned_cols=113 Identities=13% Similarity=0.255 Sum_probs=60.8
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPN 148 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~ 148 (685)
..++++.| ++..+++||. ++ .|++|.+....-...... -..|..-+.+++ + +..++.|-.
T Consensus 446 ~s~vAv~~--~~~~vaVGG~--Dg-------kvhvysl~g~~l~ee~~~--~~h~a~iT~vaySpd~~yla~~Da----- 507 (603)
T KOG0318|consen 446 SSAVAVSP--DGSEVAVGGQ--DG-------KVHVYSLSGDELKEEAKL--LEHRAAITDVAYSPDGAYLAAGDA----- 507 (603)
T ss_pred cceEEEcC--CCCEEEEecc--cc-------eEEEEEecCCcccceeee--ecccCCceEEEECCCCcEEEEecc-----
Confidence 34445555 6788999995 22 488888887654322211 134455556666 3 444444432
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
...+..||..++.= ....-....+|...-+-.-++.++.-|+.+ ..|.+|+..
T Consensus 508 ------~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlD---------t~Viiysv~ 560 (603)
T KOG0318|consen 508 ------SRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLD---------TNVIIYSVK 560 (603)
T ss_pred ------CCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEecccc---------ceEEEEEcc
Confidence 35577787765542 110000234454432222277888888753 457777654
No 240
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.06 E-value=1e+03 Score=26.69 Aligned_cols=217 Identities=18% Similarity=0.250 Sum_probs=0.0
Q ss_pred EEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC------CEEEEEcCccCCC
Q 005655 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK------NYLYIFGGEFTSP 147 (685)
Q Consensus 74 ~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~------~~iyvfGG~~~s~ 147 (685)
+.+-| .+.|++.+- ......+=+||+||.....|...-..-.|..--.-....++ +.+..+|-+.+.
T Consensus 131 ~~V~p--sDnlIl~ar----~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~- 203 (463)
T KOG0270|consen 131 EQVKP--SDNLILCAR----NEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPE- 203 (463)
T ss_pred ceecc--CCcEEEEee----ccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCce-
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCC-----------CCCCccceEEEE-------CCEEEEEccccCCCCceeeec
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGC-----------PSPRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYN 209 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-----------P~~Rsgh~~v~~-------~~~lyv~GG~~~~~~~~~~~~ 209 (685)
-.+|=+|+....--.+..... -..-++|+-+++ ...|.+-||- -.
T Consensus 204 --------IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsa---------D~ 266 (463)
T KOG0270|consen 204 --------IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSA---------DK 266 (463)
T ss_pred --------eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCC---------Cc
Q ss_pred eEEEEEcCCCceEEecc-CCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 210 DLYVFDLDQFKWQEIKP-RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 210 dv~~yD~~t~~W~~v~~-~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
.|-.+|+.+.+-...-. . .........-.....+.|.|+|.+. +.+.|+-..+-....|..-.
T Consensus 267 TV~lWD~~~g~p~~s~~~~-----~k~Vq~l~wh~~~p~~LLsGs~D~~-----------V~l~D~R~~~~s~~~wk~~g 330 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKSSITHH-----GKKVQTLEWHPYEPSVLLSGSYDGT-----------VALKDCRDPSNSGKEWKFDG 330 (463)
T ss_pred eEEEEEcCCCCcceehhhc-----CCceeEEEecCCCceEEEeccccce-----------EEeeeccCccccCceEEecc
Q ss_pred cCCCCCCCcceeEEEEECCeEEEec---ceecccCCccccccccCCcEEEEECCCC---cEEEEEecCCCch
Q 005655 289 KIGMPPGPRAGFSMCVHKKRALLFG---GVVDMEMKGDVIMSLFLNELYGFQLDNH---RWYPLELRKEKST 354 (685)
Q Consensus 289 ~~g~~P~~R~g~s~~~~~~~iyvfG---G~~~~~~~~~~~~~~~~ndl~~yd~~t~---~W~~l~~~~~~~~ 354 (685)
..- -.+.-.+.-..+++| |. |+-||+.+. .|+.-....+.+.
T Consensus 331 ~VE-------kv~w~~~se~~f~~~tddG~-----------------v~~~D~R~~~~~vwt~~AHd~~ISg 378 (463)
T KOG0270|consen 331 EVE-------KVAWDPHSENSFFVSTDDGT-----------------VYYFDIRNPGKPVWTLKAHDDEISG 378 (463)
T ss_pred ceE-------EEEecCCCceeEEEecCCce-----------------EEeeecCCCCCceeEEEeccCCcce
No 241
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=24.72 E-value=7.7e+02 Score=28.17 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=30.3
Q ss_pred eeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCC
Q 005655 99 VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTS 146 (685)
Q Consensus 99 ~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s 146 (685)
.++.|+.+|+.++.=-.-.+.+ .-++..+...++.+++++|+.++
T Consensus 373 ~ls~LvllD~~tg~~l~~S~~~---~Ir~r~~~~~~~~~vaI~g~~G~ 417 (489)
T PF05262_consen 373 YLSELVLLDSDTGDTLKRSPVN---GIRGRTFYEREDDLVAIAGCSGN 417 (489)
T ss_pred cceeEEEEeCCCCceecccccc---eeccceeEEcCCCEEEEeccCCc
Confidence 6789999999998544433333 23345555668889999998443
No 242
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=24.69 E-value=1e+03 Score=26.71 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=67.7
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCccee-EEEEE--CCEEEEEcCccCC
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAH-QAVSW--KNYLYIFGGEFTS 146 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~h-a~v~~--~~~iyvfGG~~~s 146 (685)
..+.+++.-..+++.+++||. -+.+.++++.+.+=.+... .-|-.- +.+.. .+.+|..+--
T Consensus 202 ~keil~~avS~Dgkylatgg~---------d~~v~Iw~~~t~ehv~~~~----ghr~~V~~L~fr~gt~~lys~s~D--- 265 (479)
T KOG0299|consen 202 VKEILTLAVSSDGKYLATGGR---------DRHVQIWDCDTLEHVKVFK----GHRGAVSSLAFRKGTSELYSASAD--- 265 (479)
T ss_pred cceeEEEEEcCCCcEEEecCC---------CceEEEecCcccchhhccc----ccccceeeeeeecCccceeeeecC---
Confidence 334444333338999999994 1345677777653332211 112111 12222 2456654321
Q ss_pred CCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE------CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
..+-+|++...+ .....+||...+. ..++..+||.+. ++-+|.+...+
T Consensus 266 ---------rsvkvw~~~~~s--------~vetlyGHqd~v~~IdaL~reR~vtVGgrDr---------T~rlwKi~ees 319 (479)
T KOG0299|consen 266 ---------RSVKVWSIDQLS--------YVETLYGHQDGVLGIDALSRERCVTVGGRDR---------TVRLWKIPEES 319 (479)
T ss_pred ---------CceEEEehhHhH--------HHHHHhCCccceeeechhcccceEEeccccc---------eeEEEeccccc
Confidence 223333332211 1334556655444 568888999754 33444442211
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
++-.. +..-+--+++.+++.-||.|+-++.
T Consensus 320 --qlifr-----g~~~sidcv~~In~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 320 --QLIFR-----GGEGSIDCVAFINDEHFVSGSDNGS 349 (479)
T ss_pred --eeeee-----CCCCCeeeEEEecccceeeccCCce
Confidence 11111 1222333556668888999988766
No 243
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=24.68 E-value=2.3e+02 Score=33.00 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=43.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc------EEEecCCCCC-CCcce-eEEEEEC-CEEEEEcC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE------WKVISSPNSP-PPRSA-HQAVSWK-NYLYIFGG 142 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~------W~~l~s~~~P-~~R~~-ha~v~~~-~~iyvfGG 142 (685)
-.+.+.+.+++.+++-||. + ..+++||+.+.. ...++....+ .++.+ ++.+..+ +.++|-||
T Consensus 120 Vkcla~~ak~~~lvaSgGL--D-------~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg 190 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGL--D-------RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG 190 (735)
T ss_pred heeeeecccCceeEEecCC--C-------ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecC
Confidence 3344444567899999995 2 245666665442 2233322223 33433 4444443 56888888
Q ss_pred ccCCCCCccccccCeEEEEECCCCc
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTNQ 167 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~~ 167 (685)
. -+++-.||+.+..
T Consensus 191 t-----------ek~lr~wDprt~~ 204 (735)
T KOG0308|consen 191 T-----------EKDLRLWDPRTCK 204 (735)
T ss_pred c-----------ccceEEecccccc
Confidence 4 3678889998764
No 244
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=23.62 E-value=9.5e+02 Score=26.06 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=77.7
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
+++||.-..+. +....+++||..+++-.-. .+.+-.++.+..- ++.+|+..=|...+......+-|.+
T Consensus 3 ~rvyV~D~~~~-------~~~~rv~viD~d~~k~lGm----i~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~ 71 (342)
T PF06433_consen 3 HRVYVQDPVFF-------HMTSRVYVIDADSGKLLGM----IDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEI 71 (342)
T ss_dssp TEEEEEE-GGG-------GSSEEEEEEETTTTEEEEE----EEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cEEEEECCccc-------cccceEEEEECCCCcEEEE----eecccCCceeECCCCCEEEEEEEEEeccccccceeEEEE
Confidence 56777755332 2345799999888774221 1444455533333 5578887777655544557888999
Q ss_pred EEcCCCc--eEEeccCC-CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC
Q 005655 214 FDLDQFK--WQEIKPRF-GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (685)
Q Consensus 214 yD~~t~~--W~~v~~~~-~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~ 290 (685)
||+.|-. +..+-|.. ....-..+...++..-+..+||+- . .....+-+.|+...+....-+.
T Consensus 72 ~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-~--------------TPa~SVtVVDl~~~kvv~ei~~ 136 (342)
T PF06433_consen 72 WDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN-F--------------TPATSVTVVDLAAKKVVGEIDT 136 (342)
T ss_dssp EETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE-E--------------SSSEEEEEEETTTTEEEEEEEG
T ss_pred EecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc-c--------------CCCCeEEEEECCCCceeeeecC
Confidence 9999974 43332221 111111122222222355566652 1 2345677888776655443221
Q ss_pred -C---CCCCCcceeEEEEECCeEEEe
Q 005655 291 -G---MPPGPRAGFSMCVHKKRALLF 312 (685)
Q Consensus 291 -g---~~P~~R~g~s~~~~~~~iyvf 312 (685)
| ..|.+-.++++.+-+|.+..+
T Consensus 137 PGC~~iyP~~~~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 137 PGCWLIYPSGNRGFSMLCGDGSLLTV 162 (342)
T ss_dssp TSEEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCEEEEEecCCCceEEEecCCceEEE
Confidence 1 123322345555556655544
No 245
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=23.62 E-value=64 Score=37.99 Aligned_cols=8 Identities=13% Similarity=0.758 Sum_probs=5.6
Q ss_pred CEEEEEcC
Q 005655 464 DTLYVYGG 471 (685)
Q Consensus 464 ~~Lyi~GG 471 (685)
|.+|||=-
T Consensus 802 DmvfIfKd 809 (960)
T KOG1189|consen 802 DMVFIFKD 809 (960)
T ss_pred eEEEEecc
Confidence 67888843
No 246
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=23.59 E-value=27 Score=33.12 Aligned_cols=8 Identities=13% Similarity=0.276 Sum_probs=3.3
Q ss_pred CEEEEEcC
Q 005655 464 DTLYVYGG 471 (685)
Q Consensus 464 ~~Lyi~GG 471 (685)
+-+||.|-
T Consensus 97 GPVhisG~ 104 (149)
T PF03066_consen 97 GPVHISGQ 104 (149)
T ss_dssp S-EEEEEE
T ss_pred CCEEeeCc
Confidence 44455443
No 247
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=23.28 E-value=27 Score=41.79 Aligned_cols=13 Identities=0% Similarity=0.355 Sum_probs=6.6
Q ss_pred cCCcEEEEECCCC
Q 005655 329 FLNELYGFQLDNH 341 (685)
Q Consensus 329 ~~ndl~~yd~~t~ 341 (685)
+...+|.+.+.++
T Consensus 534 ~~~~~~lv~~t~~ 546 (787)
T PF03115_consen 534 WVSSFFLVKVTKD 546 (787)
T ss_dssp EEEEEEEEEESS-
T ss_pred EEEEEEEEEEecc
Confidence 3445666665553
No 248
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=23.10 E-value=50 Score=38.87 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=3.0
Q ss_pred EEEEEc
Q 005655 103 LYRYDV 108 (685)
Q Consensus 103 v~~yd~ 108 (685)
.|.+||
T Consensus 250 T~Lidp 255 (960)
T KOG1189|consen 250 TYLIDP 255 (960)
T ss_pred eeeecc
Confidence 344555
No 249
>KOG4133 consensus tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
Probab=22.98 E-value=85 Score=32.14 Aligned_cols=59 Identities=25% Similarity=0.261 Sum_probs=40.7
Q ss_pred CCCcchhhHhhHHHHHHHHHHhhhhHHHHHH--HHHHhhhhhhCCCCcccccccccchhhc
Q 005655 624 QHTGKELRKDGFDLAEARYRELKPILDELAV--LEAEQKAEEAEGPETTSRKRGKKKNKNL 682 (685)
Q Consensus 624 ~~~~k~l~~~~f~la~~r~~e~~~~l~~~~~--le~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (685)
=...+..|+++-..||.|=-++++.||.|+. -.-+|..+.++++.+.++=+++||-+.+
T Consensus 65 ia~v~~~r~d~~h~~e~~~~~rk~~leKite~~a~~kq~le~q~~a~k~q~i~~~kk~~e~ 125 (290)
T KOG4133|consen 65 IALVVDPRPDSRHAAEARETRRKELLEKITEGQADKKQKLEQQSGASKDQEIASSKKAKEK 125 (290)
T ss_pred hhheecCCcchhhHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHhhcchhHHHHHHHhhhhh
Confidence 4455667777777999999999999999998 3334555555566665555555554443
No 250
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=22.95 E-value=1.3e+03 Score=27.88 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=17.1
Q ss_pred CCCCccceEEEECCEEEEEccc
Q 005655 177 PSPRSGHRMVLYKHKIIVFGGF 198 (685)
Q Consensus 177 P~~Rsgh~~v~~~~~lyv~GG~ 198 (685)
...|..-++++-++.|||..+-
T Consensus 303 ~v~~~aEA~a~sdd~iyvaa~d 324 (1030)
T PHA02579 303 DVSRKAEAMACSDDWIYVAARD 324 (1030)
T ss_pred chhhhhhheeccCcEEEEEecc
Confidence 4556777888889999998773
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=22.62 E-value=1.1e+03 Score=26.23 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
..+++||+.+.+...+... +..-...+....+..|++.....+ ...+|.+|+.+.....+.
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~-----~~~~~~p~wSpDG~~L~f~~~~~g--------------~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS-----PENKESPSWAIDSLHLVYSAGNSN--------------ESELYLISLITKKTRKIV 411 (428)
T ss_pred cEEEEEECCCCCeEEccCC-----CCCccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEee
Confidence 5799999999988877643 111122222222344544433211 246889999888877775
Q ss_pred c
Q 005655 289 K 289 (685)
Q Consensus 289 ~ 289 (685)
.
T Consensus 412 ~ 412 (428)
T PRK01029 412 I 412 (428)
T ss_pred c
Confidence 3
No 252
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.88 E-value=9.1e+02 Score=25.06 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=31.3
Q ss_pred ECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC-CceEEecc
Q 005655 162 DLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEIKP 226 (685)
Q Consensus 162 D~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v~~ 226 (685)
+.....|+.-.....|.+....+-...++-|-|-|| .|.|.+|-... .+|..+..
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G----------dNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG----------DNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecC----------CcEEEEEEeCCCCcEEEccc
Confidence 334567765433224555544443444556666666 36677776654 48998864
No 253
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=21.40 E-value=91 Score=30.57 Aligned_cols=71 Identities=24% Similarity=0.405 Sum_probs=35.0
Q ss_pred chhHHhhccHHHHHHHHHhcCCCCcchhhHhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhCCCCcccccccccchhh
Q 005655 603 SLKDFYRRTSMYWQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAVLEAEQKAEEAEGPETTSRKRGKKKNKN 681 (685)
Q Consensus 603 ~l~~f~~rt~~~w~~~~~~~~~~~~k~l~~~~f~la~~r~~e~~~~l~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (685)
.-..||.+...||+.+...... -++.+.+.+||. +==++- -||.+--..|..-.......++.+ +.||+|.
T Consensus 91 ~A~~~F~kA~~~FqkAv~~~P~---ne~Y~ksLe~~~-kap~lh---~e~~~~~~~~q~~~~~~~~~~~~~-~~k~kk~ 161 (186)
T PF06552_consen 91 EAEEYFEKATEYFQKAVDEDPN---NELYRKSLEMAA-KAPELH---MEIHKQGLGQQAMGGASSSSSSAK-SSKKKKS 161 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHHH-THHHHH---HHHHHSSS------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHH-hhHHHH---HHHHHHHhhhhhccCCCCCCCCcc-ccccccc
Confidence 4568999999999998876433 389999999994 555665 677665545554443333333333 3344443
No 254
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.84 E-value=5.3e+02 Score=28.50 Aligned_cols=218 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCC
Q 005655 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTS 146 (685)
Q Consensus 68 ~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s 146 (685)
++.-.|++..- ++.=||++|. .-.-||+||....+=-...-...-..-.-|.++.+ ++.+|-.||.-..
T Consensus 235 ~~~~wSC~wDl--de~h~IYaGl--------~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~ 304 (463)
T KOG1645|consen 235 YNQIWSCCWDL--DERHVIYAGL--------QNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVF 304 (463)
T ss_pred cCCceeeeecc--CCcceeEEec--------cCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEe
Q ss_pred CCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
... --.+|.+-.....|..+...+.|.+-.........+.+.+----+.+....+..-----++.-+..|..-..
T Consensus 305 ~lt-----~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~ 379 (463)
T KOG1645|consen 305 ALT-----VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRT 379 (463)
T ss_pred eeh-----hhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccc
Q ss_pred CCCCCCCCCccceeEEEe---CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC--CcceeE
Q 005655 227 RFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG--PRAGFS 301 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~--~R~g~s 301 (685)
.. +..-.+++.-.+..- ++.||++|+.... .++.|.+.+.....-=...+.....|. .+..+-
T Consensus 380 ~~-Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~-----------lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syL 447 (463)
T KOG1645|consen 380 YF-GSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE-----------LILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYL 447 (463)
T ss_pred cc-CCcccccccccceeccccccEEEEecCCcce-----------eEEeccchhheeeecccCcceeecceeecCCcchh
Q ss_pred EEEECCeEEEe
Q 005655 302 MCVHKKRALLF 312 (685)
Q Consensus 302 ~~~~~~~iyvf 312 (685)
++..++++-|+
T Consensus 448 a~LTd~~v~Iy 458 (463)
T KOG1645|consen 448 ALLTDDRVHIY 458 (463)
T ss_pred hheecceEEEE
Done!