Query 005655
Match_columns 685
No_of_seqs 465 out of 2831
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 03:42:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 3.5E-44 1.2E-48 378.6 32.6 289 63-503 9-297 (308)
2 2xn4_A Kelch-like protein 2; s 100.0 1.4E-42 4.9E-47 364.5 34.8 269 81-500 15-283 (302)
3 2uvk_A YJHT; unknown function, 100.0 4.9E-43 1.7E-47 376.8 31.7 305 61-502 2-351 (357)
4 3ii7_A Kelch-like protein 7; p 100.0 1.5E-42 5E-47 365.1 33.6 271 81-502 11-281 (306)
5 2vpj_A Kelch-like protein 12; 100.0 5.1E-42 1.8E-46 359.8 35.3 271 81-502 14-287 (301)
6 4asc_A Kelch repeat and BTB do 100.0 1.3E-42 4.6E-47 367.4 31.1 278 81-502 4-286 (315)
7 2woz_A Kelch repeat and BTB do 100.0 3.5E-42 1.2E-46 364.7 30.9 284 66-500 6-294 (318)
8 4asc_A Kelch repeat and BTB do 100.0 1E-41 3.4E-46 360.7 31.2 252 63-346 30-283 (315)
9 2woz_A Kelch repeat and BTB do 100.0 2.9E-41 9.8E-46 357.7 30.1 250 64-346 42-293 (318)
10 2xn4_A Kelch-like protein 2; s 100.0 1.5E-40 5E-45 349.2 34.6 238 63-347 46-283 (302)
11 1zgk_A Kelch-like ECH-associat 100.0 2.8E-40 9.7E-45 348.7 35.6 243 61-348 53-295 (308)
12 3ii7_A Kelch-like protein 7; p 100.0 2E-40 6.9E-45 348.8 34.2 243 61-348 38-280 (306)
13 2vpj_A Kelch-like protein 12; 100.0 5.5E-39 1.9E-43 336.7 33.6 239 61-348 45-286 (301)
14 2zwa_A Leucine carboxyl methyl 100.0 5.4E-38 1.9E-42 367.5 30.4 243 63-347 383-642 (695)
15 2uvk_A YJHT; unknown function, 100.0 3.1E-35 1.1E-39 315.9 30.1 264 61-349 47-351 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 1.1E-32 3.9E-37 322.4 26.3 242 119-499 383-641 (695)
17 1k3i_A Galactose oxidase precu 100.0 4.5E-31 1.5E-35 307.3 20.4 307 66-504 183-508 (656)
18 1k3i_A Galactose oxidase precu 100.0 1.1E-29 3.6E-34 295.8 19.8 257 64-347 236-504 (656)
19 3mbr_X Glutamine cyclotransfer 97.8 0.0019 6.4E-08 64.9 19.8 162 125-344 21-183 (243)
20 3dsm_A Uncharacterized protein 97.7 0.019 6.4E-07 59.7 28.4 192 101-344 17-216 (328)
21 3q7m_A Lipoprotein YFGL, BAMB; 97.7 0.013 4.6E-07 61.7 26.5 198 73-345 48-265 (376)
22 3q7m_A Lipoprotein YFGL, BAMB; 97.7 0.03 1E-06 58.9 29.1 185 81-342 103-298 (376)
23 3mbr_X Glutamine cyclotransfer 97.6 0.012 4.2E-07 58.9 23.7 191 69-315 21-224 (243)
24 3dsm_A Uncharacterized protein 97.5 0.033 1.1E-06 57.8 26.3 207 68-343 43-256 (328)
25 2iwa_A Glutamine cyclotransfer 97.5 0.035 1.2E-06 56.4 24.7 202 71-340 23-237 (266)
26 3nol_A Glutamine cyclotransfer 97.5 0.029 9.8E-07 56.8 23.7 188 71-315 45-245 (262)
27 3nok_A Glutaminyl cyclase; bet 97.3 0.017 5.8E-07 58.6 19.8 185 71-315 57-255 (268)
28 3nol_A Glutamine cyclotransfer 97.3 0.0077 2.6E-07 61.0 17.0 159 128-344 46-205 (262)
29 2iwa_A Glutamine cyclotransfer 97.2 0.024 8.2E-07 57.7 19.9 160 127-343 23-184 (266)
30 1l0q_A Surface layer protein; 97.1 0.011 3.7E-07 62.1 17.2 185 82-345 2-194 (391)
31 2ojh_A Uncharacterized protein 97.1 0.023 8E-07 56.1 18.7 215 71-348 44-266 (297)
32 2hqs_A Protein TOLB; TOLB, PAL 97.1 0.032 1.1E-06 60.1 20.5 207 73-348 183-395 (415)
33 1l0q_A Surface layer protein; 97.0 0.04 1.4E-06 57.8 20.6 195 72-343 35-236 (391)
34 2qc5_A Streptogramin B lactona 97.0 0.13 4.5E-06 51.2 23.3 199 71-347 22-224 (300)
35 4ery_A WD repeat-containing pr 96.9 0.079 2.7E-06 53.7 21.2 196 73-342 70-270 (312)
36 3vgz_A Uncharacterized protein 96.9 0.46 1.6E-05 48.4 27.0 210 72-345 44-267 (353)
37 1gxr_A ESG1, transducin-like e 96.9 0.052 1.8E-06 54.9 19.4 195 72-344 101-300 (337)
38 2z2n_A Virginiamycin B lyase; 96.9 0.12 4E-06 51.6 21.6 191 72-341 102-296 (299)
39 3jrp_A Fusion protein of prote 96.9 0.038 1.3E-06 57.1 18.2 113 73-219 16-135 (379)
40 3vgz_A Uncharacterized protein 96.8 0.27 9.2E-06 50.2 24.6 184 101-345 111-308 (353)
41 2z2n_A Virginiamycin B lyase; 96.8 0.23 7.8E-06 49.4 23.4 198 72-348 18-220 (299)
42 1k8k_C P40, ARP2/3 complex 41 96.8 0.094 3.2E-06 54.0 20.5 149 72-257 12-165 (372)
43 1q7f_A NHL, brain tumor CG1071 96.7 0.44 1.5E-05 47.4 24.6 206 72-348 33-246 (286)
44 3g4e_A Regucalcin; six bladed 96.7 0.37 1.3E-05 48.8 24.0 210 68-344 12-233 (297)
45 3nok_A Glutaminyl cyclase; bet 96.6 0.042 1.4E-06 55.7 15.8 155 128-343 58-213 (268)
46 3bws_A Protein LP49; two-domai 96.5 0.18 6.3E-06 53.4 21.1 189 102-345 102-297 (433)
47 3jrp_A Fusion protein of prote 96.5 0.076 2.6E-06 54.7 17.2 202 82-350 69-298 (379)
48 1pjx_A Dfpase, DIISOPROPYLFLUO 96.5 0.19 6.7E-06 50.5 19.9 135 72-224 21-167 (314)
49 3v9f_A Two-component system se 96.5 0.081 2.8E-06 61.8 19.2 187 102-347 384-575 (781)
50 2qc5_A Streptogramin B lactona 96.4 0.58 2E-05 46.3 23.2 198 72-348 65-267 (300)
51 3jro_A Fusion protein of prote 96.4 0.027 9.1E-07 65.8 14.7 106 81-219 20-133 (753)
52 3v9f_A Two-component system se 96.4 0.091 3.1E-06 61.4 19.3 185 101-348 427-619 (781)
53 1gxr_A ESG1, transducin-like e 96.4 0.16 5.6E-06 51.2 19.0 195 72-343 55-258 (337)
54 2vdu_B TRNA (guanine-N(7)-)-me 96.4 0.36 1.2E-05 51.9 22.7 162 72-286 106-276 (450)
55 1kb0_A Quinohemoprotein alcoho 96.4 0.31 1.1E-05 56.1 23.3 120 81-226 77-209 (677)
56 4ery_A WD repeat-containing pr 96.4 0.26 8.9E-06 49.8 20.4 193 73-342 28-225 (312)
57 1p22_A F-BOX/WD-repeat protein 96.4 0.25 8.5E-06 52.9 21.2 185 81-342 142-327 (435)
58 4a2l_A BT_4663, two-component 96.3 0.24 8.2E-06 57.9 22.5 186 102-348 428-622 (795)
59 3bws_A Protein LP49; two-domai 96.3 0.23 7.7E-06 52.7 20.3 204 73-344 127-338 (433)
60 4a2l_A BT_4663, two-component 96.2 0.75 2.6E-05 53.6 25.9 184 102-348 108-299 (795)
61 3dwl_C Actin-related protein 2 96.2 0.014 4.7E-07 61.0 9.8 147 74-257 17-169 (377)
62 1rwi_B Serine/threonine-protei 96.2 0.3 1E-05 48.0 19.4 194 70-341 25-223 (270)
63 3ei3_B DNA damage-binding prot 96.2 0.18 6.3E-06 52.5 18.5 196 71-342 76-284 (383)
64 2ad6_A Methanol dehydrogenase 96.2 0.57 2E-05 52.7 23.5 120 81-225 62-194 (571)
65 2z3z_A Dipeptidyl aminopeptida 96.1 0.35 1.2E-05 55.2 21.9 194 101-342 235-437 (706)
66 4e54_B DNA damage-binding prot 96.1 0.032 1.1E-06 60.1 12.1 116 72-219 123-241 (435)
67 2dg1_A DRP35, lactonase; beta 96.0 0.22 7.7E-06 50.8 17.9 129 72-225 48-178 (333)
68 1r5m_A SIR4-interacting protei 96.0 0.27 9.1E-06 51.3 18.6 176 101-340 171-361 (425)
69 1r5m_A SIR4-interacting protei 96.0 0.76 2.6E-05 47.8 22.0 194 72-342 112-321 (425)
70 3zwl_B Eukaryotic translation 95.9 0.76 2.6E-05 46.7 21.3 207 72-345 36-254 (369)
71 4aez_A CDC20, WD repeat-contai 95.9 0.21 7.2E-06 52.8 17.3 181 102-347 157-343 (401)
72 3fm0_A Protein CIAO1; WDR39,SG 95.8 0.26 9E-06 51.0 17.6 190 72-316 20-215 (345)
73 1k8k_C P40, ARP2/3 complex 41 95.8 0.41 1.4E-05 49.1 19.0 114 72-217 56-172 (372)
74 2ojh_A Uncharacterized protein 95.8 0.5 1.7E-05 46.2 18.7 187 100-347 21-213 (297)
75 2xbg_A YCF48-like protein; pho 95.8 2.1 7.3E-05 44.1 24.3 174 81-314 46-223 (327)
76 3azo_A Aminopeptidase; POP fam 95.8 0.5 1.7E-05 53.5 20.9 226 72-348 133-377 (662)
77 2ovr_B FBW7, F-BOX/WD repeat p 95.7 1.1 3.7E-05 47.8 22.3 154 133-340 287-442 (445)
78 3v7d_B Cell division control p 95.7 2.5 8.5E-05 45.0 25.3 133 156-342 290-423 (464)
79 4aez_A CDC20, WD repeat-contai 95.7 1.2 4.2E-05 46.7 22.5 181 101-344 113-297 (401)
80 2hqs_A Protein TOLB; TOLB, PAL 95.7 0.35 1.2E-05 51.8 18.1 187 101-347 159-351 (415)
81 2aq5_A Coronin-1A; WD40 repeat 95.7 0.44 1.5E-05 50.2 18.7 211 73-352 136-354 (402)
82 1got_B GT-beta; complex (GTP-b 95.6 1.4 4.7E-05 45.3 22.1 135 156-342 164-303 (340)
83 1yiq_A Quinohemoprotein alcoho 95.6 2 6.8E-05 49.5 25.4 118 81-224 70-200 (689)
84 2vdu_B TRNA (guanine-N(7)-)-me 95.6 0.72 2.5E-05 49.5 20.4 66 135-222 210-275 (450)
85 2ovr_B FBW7, F-BOX/WD repeat p 95.6 1.4 4.7E-05 47.0 22.5 137 157-345 260-396 (445)
86 1kv9_A Type II quinohemoprotei 95.6 2 6.8E-05 49.2 25.1 119 81-225 66-196 (668)
87 3e5z_A Putative gluconolactona 95.5 0.6 2E-05 46.8 18.4 211 69-348 28-254 (296)
88 3hfq_A Uncharacterized protein 95.5 0.31 1.1E-05 50.0 16.6 61 102-173 19-80 (347)
89 4gqb_B Methylosome protein 50; 95.5 0.66 2.2E-05 48.3 19.2 190 73-340 132-331 (344)
90 4g56_B MGC81050 protein; prote 95.5 0.26 8.9E-06 51.5 15.9 193 73-340 144-343 (357)
91 3ow8_A WD repeat-containing pr 95.5 1.1 3.9E-05 45.7 20.5 162 102-316 145-311 (321)
92 3hfq_A Uncharacterized protein 95.4 0.66 2.2E-05 47.5 18.7 214 73-347 44-279 (347)
93 1vyh_C Platelet-activating fac 95.4 0.7 2.4E-05 49.1 19.4 141 73-257 113-257 (410)
94 2hes_X YDR267CP; beta-propelle 95.4 0.33 1.1E-05 49.9 16.2 199 74-340 113-328 (330)
95 3vl1_A 26S proteasome regulato 95.3 1.5 5E-05 45.9 21.5 104 189-340 258-365 (420)
96 3u4y_A Uncharacterized protein 95.3 0.48 1.6E-05 48.0 17.0 132 81-254 9-148 (331)
97 3v7d_B Cell division control p 95.3 1.8 6.3E-05 46.1 22.4 172 82-315 280-452 (464)
98 1nir_A Nitrite reductase; hemo 95.3 0.85 2.9E-05 50.9 20.2 141 156-340 248-402 (543)
99 3scy_A Hypothetical bacterial 95.3 1.5 5.1E-05 45.1 20.9 62 274-348 235-301 (361)
100 3mkq_A Coatomer beta'-subunit; 95.3 0.43 1.5E-05 55.2 18.4 195 72-342 59-261 (814)
101 3ow8_A WD repeat-containing pr 95.2 1.5 5.1E-05 44.8 20.4 173 102-342 103-281 (321)
102 3mkq_A Coatomer beta'-subunit; 95.2 0.44 1.5E-05 55.1 18.0 151 72-282 17-173 (814)
103 1ri6_A Putative isomerase YBHE 95.2 0.77 2.6E-05 46.3 17.9 119 72-224 41-167 (343)
104 3azo_A Aminopeptidase; POP fam 95.1 0.86 2.9E-05 51.5 20.0 206 101-346 102-331 (662)
105 1rwi_B Serine/threonine-protei 95.1 1.3 4.3E-05 43.3 18.9 180 72-315 70-253 (270)
106 1p22_A F-BOX/WD-repeat protein 95.1 1.1 3.9E-05 47.6 19.9 170 102-339 194-364 (435)
107 3vl1_A 26S proteasome regulato 95.1 2 6.9E-05 44.8 21.6 105 81-221 108-215 (420)
108 2aq5_A Coronin-1A; WD40 repeat 95.0 0.42 1.4E-05 50.3 15.9 204 73-347 86-308 (402)
109 1got_B GT-beta; complex (GTP-b 95.0 2.6 8.8E-05 43.2 21.5 195 73-342 60-259 (340)
110 1w6s_A Methanol dehydrogenase 94.9 1.8 6.1E-05 49.1 21.6 126 73-226 57-201 (599)
111 3no2_A Uncharacterized protein 94.9 1.2 4.3E-05 44.7 18.4 186 81-343 4-198 (276)
112 1nir_A Nitrite reductase; hemo 94.9 3.7 0.00013 45.7 23.9 104 81-222 148-261 (543)
113 1erj_A Transcriptional repress 94.9 2.7 9.3E-05 44.0 21.8 148 134-341 134-288 (393)
114 2ghs_A AGR_C_1268P; regucalcin 94.8 4 0.00014 41.7 22.9 121 71-224 51-174 (326)
115 1qhu_A Protein (hemopexin); be 94.8 1.4 4.6E-05 48.2 19.4 59 134-219 158-216 (460)
116 4g56_B MGC81050 protein; prote 94.8 0.5 1.7E-05 49.2 15.6 149 134-344 150-305 (357)
117 3scy_A Hypothetical bacterial 94.8 0.74 2.5E-05 47.5 16.9 97 102-218 30-129 (361)
118 4aow_A Guanine nucleotide-bind 94.8 0.75 2.6E-05 46.4 16.6 135 157-341 196-338 (340)
119 3u4y_A Uncharacterized protein 94.8 1.3 4.4E-05 44.7 18.4 200 73-348 44-260 (331)
120 3f3f_A Nucleoporin SEH1; struc 94.8 2.9 9.8E-05 41.5 20.9 29 306-348 317-346 (351)
121 1qhu_A Protein (hemopexin); be 94.8 0.47 1.6E-05 51.9 15.5 59 81-166 158-216 (460)
122 3iuj_A Prolyl endopeptidase; h 94.7 3.7 0.00013 47.0 24.0 198 101-347 155-366 (693)
123 3fvz_A Peptidyl-glycine alpha- 94.7 4.4 0.00015 41.3 24.2 210 72-339 94-321 (329)
124 1ri6_A Putative isomerase YBHE 94.7 0.45 1.5E-05 48.1 14.5 60 101-173 15-79 (343)
125 2z3z_A Dipeptidyl aminopeptida 94.6 2.4 8.3E-05 48.1 22.2 158 101-288 101-301 (706)
126 3e5z_A Putative gluconolactona 94.6 1.8 6.3E-05 43.1 19.0 169 72-288 72-253 (296)
127 1q7f_A NHL, brain tumor CG1071 94.6 3.8 0.00013 40.4 24.8 185 72-313 80-268 (286)
128 4gga_A P55CDC, cell division c 94.6 0.54 1.9E-05 50.0 15.6 51 274-342 303-355 (420)
129 3iz6_a 40S ribosomal protein R 94.6 3.2 0.00011 43.2 21.5 184 102-341 181-376 (380)
130 3jro_A Fusion protein of prote 94.5 0.24 8.2E-06 57.6 13.5 198 82-347 67-293 (753)
131 2p4o_A Hypothetical protein; p 94.5 4.5 0.00016 40.8 23.9 117 67-219 30-148 (306)
132 3fm0_A Protein CIAO1; WDR39,SG 94.5 0.97 3.3E-05 46.6 16.9 147 73-257 66-217 (345)
133 3zwl_B Eukaryotic translation 94.5 1.7 5.8E-05 44.0 18.5 187 73-316 79-280 (369)
134 2pbi_B Guanine nucleotide-bind 94.5 1.4 4.8E-05 45.7 18.1 135 156-342 176-317 (354)
135 3fvz_A Peptidyl-glycine alpha- 94.4 5 0.00017 40.8 27.1 199 101-345 69-282 (329)
136 4gqb_B Methylosome protein 50; 94.4 1.2 4.1E-05 46.3 17.3 147 134-343 138-292 (344)
137 1pjx_A Dfpase, DIISOPROPYLFLUO 94.4 2.4 8E-05 42.3 19.1 123 72-221 74-211 (314)
138 3ott_A Two-component system se 94.4 1.9 6.6E-05 49.9 20.7 143 134-340 482-626 (758)
139 4aow_A Guanine nucleotide-bind 94.3 1.4 4.9E-05 44.2 17.4 103 191-343 186-289 (340)
140 2pbi_B Guanine nucleotide-bind 94.3 1.6 5.4E-05 45.3 18.0 134 102-283 177-317 (354)
141 1sq9_A Antiviral protein SKI8; 94.2 1.4 4.8E-05 45.6 17.5 197 83-342 27-269 (397)
142 1sq9_A Antiviral protein SKI8; 94.2 4.1 0.00014 41.9 21.0 69 134-220 197-269 (397)
143 3ott_A Two-component system se 94.1 1.6 5.4E-05 50.6 19.1 111 81-225 482-593 (758)
144 2ynn_A Coatomer subunit beta'; 94.0 0.74 2.5E-05 46.5 14.5 143 72-257 17-164 (304)
145 2hes_X YDR267CP; beta-propelle 94.0 1.9 6.4E-05 44.1 17.8 158 134-348 118-288 (330)
146 1yfq_A Cell cycle arrest prote 94.0 2.2 7.5E-05 42.9 18.1 110 72-218 15-131 (342)
147 2xdw_A Prolyl endopeptidase; a 93.9 6.6 0.00023 44.8 23.9 149 155-348 258-424 (710)
148 4gga_A P55CDC, cell division c 93.9 1.6 5.4E-05 46.3 17.3 95 101-221 125-221 (420)
149 2ecf_A Dipeptidyl peptidase IV 93.8 1.4 4.9E-05 50.3 18.0 128 68-227 36-190 (741)
150 3g4e_A Regucalcin; six bladed 93.8 2.5 8.7E-05 42.4 18.0 154 101-287 73-235 (297)
151 1jmx_B Amine dehydrogenase; ox 93.8 3.4 0.00012 41.6 19.0 68 81-170 10-79 (349)
152 1pex_A Collagenase-3, MMP-13; 93.8 1.6 5.3E-05 42.4 15.4 151 129-345 28-197 (207)
153 4a11_B DNA excision repair pro 93.8 1.1 3.8E-05 46.2 15.6 110 189-341 256-366 (408)
154 4e54_B DNA damage-binding prot 93.8 0.91 3.1E-05 48.5 15.2 93 102-220 188-284 (435)
155 1vyh_C Platelet-activating fac 93.7 2.4 8.2E-05 44.8 18.4 65 134-222 203-269 (410)
156 3i2n_A WD repeat-containing pr 93.7 1.4 4.8E-05 44.6 15.9 187 72-315 22-232 (357)
157 2ecf_A Dipeptidyl peptidase IV 93.7 0.76 2.6E-05 52.6 15.4 174 72-288 112-328 (741)
158 3hrp_A Uncharacterized protein 93.5 9.1 0.00031 40.7 24.4 208 72-348 134-362 (409)
159 2pm7_B Protein transport prote 93.5 0.99 3.4E-05 45.4 14.2 113 73-219 14-133 (297)
160 1pgu_A Actin interacting prote 93.5 2.1 7.2E-05 47.1 18.1 197 71-343 21-241 (615)
161 1flg_A Protein (quinoprotein e 93.5 5.9 0.0002 44.5 21.9 115 81-223 68-200 (582)
162 1erj_A Transcriptional repress 93.4 2 6.8E-05 45.1 17.1 110 73-221 128-241 (393)
163 1pex_A Collagenase-3, MMP-13; 93.4 2.6 8.8E-05 40.8 16.3 149 81-286 33-197 (207)
164 4a11_B DNA excision repair pro 93.4 0.7 2.4E-05 47.8 13.3 111 73-219 104-219 (408)
165 3odt_A Protein DOA1; ubiquitin 93.4 2.8 9.6E-05 41.3 17.3 186 81-342 28-216 (313)
166 1pby_B Quinohemoprotein amine 93.2 3.4 0.00012 41.2 17.9 52 101-170 115-168 (337)
167 1npe_A Nidogen, entactin; glyc 93.2 6.8 0.00023 38.4 26.8 198 72-344 39-242 (267)
168 3pe7_A Oligogalacturonate lyas 93.2 5.6 0.00019 40.9 19.9 224 75-348 42-281 (388)
169 3dm0_A Maltose-binding peripla 93.2 3.4 0.00012 47.0 19.6 104 191-344 532-636 (694)
170 2ynn_A Coatomer subunit beta'; 93.2 3.6 0.00012 41.3 17.8 192 74-342 61-261 (304)
171 3b7f_A Glycosyl hydrolase, BNR 93.1 7.2 0.00025 40.9 21.0 196 70-313 56-297 (394)
172 3dwl_C Actin-related protein 2 93.1 0.31 1.1E-05 50.4 10.0 115 72-219 59-178 (377)
173 1qks_A Cytochrome CD1 nitrite 93.1 4 0.00014 45.8 19.7 106 208-348 319-434 (567)
174 2dg1_A DRP35, lactonase; beta 93.1 2 6.9E-05 43.5 16.0 121 72-218 90-213 (333)
175 4h5i_A Guanine nucleotide-exch 93.1 8.9 0.0003 39.7 21.3 201 73-340 138-343 (365)
176 2pm9_A Protein WEB1, protein t 93.1 0.98 3.3E-05 47.1 13.8 150 135-341 178-338 (416)
177 3b7f_A Glycosyl hydrolase, BNR 93.0 3.6 0.00012 43.3 18.4 193 102-347 32-269 (394)
178 1itv_A MMP9; adaptive molecula 93.0 3.2 0.00011 39.7 16.1 149 128-342 10-176 (195)
179 2xyi_A Probable histone-bindin 93.0 0.36 1.2E-05 51.6 10.4 22 189-219 243-264 (430)
180 3ei3_B DNA damage-binding prot 92.9 1.5 5.2E-05 45.4 15.0 91 102-218 142-236 (383)
181 1yfq_A Cell cycle arrest prote 92.9 4.2 0.00014 40.8 18.0 144 72-257 60-217 (342)
182 3c5m_A Oligogalacturonate lyas 92.9 2.1 7.3E-05 44.1 16.1 211 101-347 168-391 (396)
183 1pgu_A Actin interacting prote 92.9 2.2 7.6E-05 46.9 17.0 150 137-340 175-328 (615)
184 3sfz_A APAF-1, apoptotic pepti 92.8 0.99 3.4E-05 55.2 15.2 191 73-342 966-1160(1249)
185 3gre_A Serine/threonine-protei 92.7 5.4 0.00018 41.9 19.3 68 134-223 181-250 (437)
186 2xbg_A YCF48-like protein; pho 92.7 10 0.00034 38.9 22.8 180 103-348 17-201 (327)
187 3k26_A Polycomb protein EED; W 92.6 2 7E-05 43.4 15.2 129 102-257 45-184 (366)
188 1yr2_A Prolyl oligopeptidase; 92.5 6.1 0.00021 45.4 20.8 213 81-344 173-399 (741)
189 2pm9_A Protein WEB1, protein t 92.5 1.8 6.2E-05 44.9 14.9 206 72-343 71-297 (416)
190 3ju4_A Endo-N-acetylneuraminid 92.4 10 0.00035 40.1 19.5 217 110-338 269-512 (670)
191 2bkl_A Prolyl endopeptidase; m 92.3 3.1 0.0001 47.6 17.6 151 155-348 251-405 (695)
192 1kb0_A Quinohemoprotein alcoho 92.2 5 0.00017 45.9 19.3 125 129-288 72-208 (677)
193 2xdw_A Prolyl endopeptidase; a 92.2 5.7 0.00019 45.4 19.8 128 71-225 235-376 (710)
194 1yiq_A Quinohemoprotein alcoho 92.1 8.4 0.00029 44.2 21.1 125 129-288 65-201 (689)
195 3odt_A Protein DOA1; ubiquitin 92.0 9.7 0.00033 37.3 20.0 106 189-345 195-301 (313)
196 1itv_A MMP9; adaptive molecula 92.0 5.1 0.00017 38.3 16.0 145 81-283 16-176 (195)
197 3dr2_A Exported gluconolactona 91.7 4.8 0.00016 40.5 16.5 215 70-348 46-275 (305)
198 1pby_B Quinohemoprotein amine 91.7 6.3 0.00022 39.2 17.4 108 101-223 11-129 (337)
199 3dm0_A Maltose-binding peripla 91.6 7 0.00024 44.4 19.6 52 156-220 541-594 (694)
200 1kv9_A Type II quinohemoprotei 91.6 8 0.00027 44.1 20.1 124 129-288 61-196 (668)
201 3lrv_A PRE-mRNA-splicing facto 91.6 4.1 0.00014 41.6 16.1 104 189-341 138-245 (343)
202 3sfz_A APAF-1, apoptotic pepti 91.6 3.6 0.00012 50.1 18.2 140 73-257 620-766 (1249)
203 3i2n_A WD repeat-containing pr 91.5 1.9 6.3E-05 43.6 13.3 93 102-218 140-243 (357)
204 2pm7_B Protein transport prote 91.4 5.6 0.00019 39.6 16.7 72 246-348 219-294 (297)
205 1yr2_A Prolyl oligopeptidase; 91.2 8.1 0.00028 44.4 19.8 127 71-224 270-401 (741)
206 3o4h_A Acylamino-acid-releasin 91.2 2.4 8.2E-05 47.0 14.9 96 103-222 134-231 (582)
207 2ad6_A Methanol dehydrogenase 91.2 9.7 0.00033 42.6 19.8 125 129-288 57-194 (571)
208 3pe7_A Oligogalacturonate lyas 91.1 3.3 0.00011 42.7 15.0 205 101-343 168-387 (388)
209 3iz6_a 40S ribosomal protein R 91.1 5.4 0.00018 41.5 16.7 142 156-343 180-332 (380)
210 3o4h_A Acylamino-acid-releasin 90.8 16 0.00054 40.2 21.1 138 156-344 90-231 (582)
211 3bg1_A Protein SEC13 homolog; 90.7 1.4 4.9E-05 44.6 11.5 119 73-225 18-144 (316)
212 3mmy_A MRNA export factor; mRN 90.7 9.5 0.00032 38.2 17.8 113 72-220 43-162 (368)
213 3no2_A Uncharacterized protein 90.6 15 0.00051 36.6 20.8 180 71-313 39-230 (276)
214 4ggc_A P55CDC, cell division c 90.4 6.1 0.00021 39.0 15.7 111 73-219 72-182 (318)
215 2fp8_A Strictosidine synthase; 90.1 17 0.00058 36.6 20.4 112 101-224 40-180 (322)
216 3bg1_A Protein SEC13 homolog; 90.0 4.2 0.00014 41.1 14.4 30 306-349 273-303 (316)
217 2bkl_A Prolyl endopeptidase; m 90.0 8.3 0.00028 43.9 18.3 126 71-224 229-357 (695)
218 3lrv_A PRE-mRNA-splicing facto 89.9 16 0.00054 37.0 18.7 103 82-220 139-246 (343)
219 2gop_A Trilobed protease; beta 89.6 13 0.00046 37.2 17.9 194 99-346 41-257 (347)
220 3c5m_A Oligogalacturonate lyas 89.6 4.6 0.00016 41.5 14.4 114 101-227 216-338 (396)
221 2fp8_A Strictosidine synthase; 89.5 19 0.00064 36.3 19.6 216 72-340 83-313 (322)
222 3dw8_B Serine/threonine-protei 89.4 16 0.00055 38.0 18.8 71 73-168 182-261 (447)
223 1jmx_B Amine dehydrogenase; ox 89.4 2.3 7.9E-05 42.8 11.7 68 134-223 10-79 (349)
224 4h5i_A Guanine nucleotide-exch 89.3 12 0.0004 38.8 17.4 131 102-257 198-335 (365)
225 2xyi_A Probable histone-bindin 89.1 4 0.00014 43.3 13.8 114 72-218 185-309 (430)
226 1qks_A Cytochrome CD1 nitrite 89.0 16 0.00056 40.7 19.3 194 81-345 166-378 (567)
227 3iuj_A Prolyl endopeptidase; h 89.0 16 0.00056 41.5 19.8 148 101-290 259-414 (693)
228 1w6s_A Methanol dehydrogenase 88.8 13 0.00045 41.9 18.4 126 128-288 56-200 (599)
229 4ggc_A P55CDC, cell division c 88.7 19 0.00065 35.2 17.9 128 101-257 45-173 (318)
230 3frx_A Guanine nucleotide-bind 88.6 21 0.00073 35.7 18.9 51 157-220 177-229 (319)
231 3dw8_B Serine/threonine-protei 88.4 10 0.00034 39.7 16.4 31 71-112 31-61 (447)
232 4d9s_A UVB-resistance protein 88.3 14 0.00047 39.2 17.4 18 70-89 130-147 (406)
233 1xfd_A DIP, dipeptidyl aminope 88.2 11 0.00037 42.7 17.5 114 102-227 38-152 (723)
234 1gen_A Gelatinase A; hydrolase 87.8 21 0.00071 34.6 17.3 104 81-219 40-154 (218)
235 3c7x_A Matrix metalloproteinas 87.7 5.9 0.0002 37.9 12.5 151 129-342 10-177 (196)
236 2hz6_A Endoplasmic reticulum t 87.6 0.27 9.2E-06 52.0 3.2 52 102-170 20-75 (369)
237 1xfd_A DIP, dipeptidyl aminope 87.5 8.1 0.00028 43.7 15.9 88 72-173 64-151 (723)
238 2oaj_A Protein SNI1; WD40 repe 87.1 22 0.00074 42.1 19.7 110 72-221 21-132 (902)
239 3mmy_A MRNA export factor; mRN 86.7 13 0.00045 37.1 15.5 106 135-283 54-162 (368)
240 3gre_A Serine/threonine-protei 86.6 33 0.0011 35.6 20.1 68 81-170 181-250 (437)
241 2ghs_A AGR_C_1268P; regucalcin 86.5 29 0.001 35.0 21.1 96 102-217 110-209 (326)
242 3ba0_A Macrophage metalloelast 86.2 14 0.00048 38.8 15.6 110 134-287 236-356 (365)
243 2mad_H Methylamine dehydrogena 86.1 35 0.0012 35.5 25.2 74 245-344 278-354 (373)
244 4d9s_A UVB-resistance protein 85.7 37 0.0013 35.8 18.9 16 127-142 131-147 (406)
245 2ymu_A WD-40 repeat protein; u 85.6 29 0.00099 37.6 18.7 105 189-344 437-543 (577)
246 2p4o_A Hypothetical protein; p 85.5 31 0.0011 34.4 20.5 95 102-218 96-198 (306)
247 3k26_A Polycomb protein EED; W 85.0 27 0.00091 34.8 16.8 108 190-341 85-193 (366)
248 1su3_A Interstitial collagenas 84.9 10 0.00035 41.1 14.0 150 81-286 272-437 (450)
249 1flg_A Protein (quinoprotein e 84.5 34 0.0012 38.2 18.7 74 129-224 63-144 (582)
250 2xzm_R RACK1; ribosome, transl 84.4 37 0.0013 34.2 19.0 62 81-166 87-150 (343)
251 1su3_A Interstitial collagenas 84.4 7.7 0.00026 42.2 12.7 153 129-345 267-437 (450)
252 4a5s_A Dipeptidyl peptidase 4 84.2 17 0.00058 41.6 16.5 81 74-173 67-149 (740)
253 3kci_A Probable E3 ubiquitin-p 84.1 22 0.00074 37.4 16.1 18 70-89 116-133 (389)
254 3dr2_A Exported gluconolactona 83.5 18 0.00062 36.0 14.6 109 102-220 108-226 (305)
255 3ba0_A Macrophage metalloelast 83.5 25 0.00085 36.9 15.9 154 129-345 185-355 (365)
256 2ymu_A WD-40 repeat protein; u 83.2 52 0.0018 35.5 19.3 169 102-341 326-499 (577)
257 2p9w_A MAL S 1 allergenic prot 82.6 48 0.0017 34.3 17.5 204 72-317 66-306 (334)
258 2xzm_R RACK1; ribosome, transl 82.2 44 0.0015 33.6 18.0 61 134-218 87-149 (343)
259 3oyo_A Hemopexin fold protein 82.0 5.5 0.00019 39.0 9.5 61 245-339 127-197 (225)
260 3hxj_A Pyrrolo-quinoline quino 82.0 42 0.0014 33.1 17.9 89 102-224 118-211 (330)
261 1hxn_A Hemopexin, HPX; heme, b 82.0 14 0.0005 35.8 12.5 101 81-218 28-144 (219)
262 2gop_A Trilobed protease; beta 81.9 44 0.0015 33.3 19.7 106 101-226 152-259 (347)
263 1npe_A Nidogen, entactin; glyc 81.3 41 0.0014 32.5 21.8 160 72-288 82-245 (267)
264 3frx_A Guanine nucleotide-bind 81.1 47 0.0016 33.1 20.2 144 81-283 76-229 (319)
265 1gen_A Gelatinase A; hydrolase 80.5 14 0.00048 35.8 11.8 103 81-220 87-204 (218)
266 1k32_A Tricorn protease; prote 80.0 21 0.00071 42.8 15.6 147 102-288 318-468 (1045)
267 3f3f_A Nucleoporin SEH1; struc 79.0 49 0.0017 32.2 16.5 32 72-112 114-145 (351)
268 1nr0_A Actin interacting prote 78.5 86 0.0029 34.6 22.5 181 102-344 171-359 (611)
269 3c7x_A Matrix metalloproteinas 78.2 16 0.00054 34.8 11.2 102 81-220 61-177 (196)
270 1k32_A Tricorn protease; prote 77.7 1E+02 0.0034 36.7 20.7 112 102-226 34-151 (1045)
271 3hxj_A Pyrrolo-quinoline quino 77.6 23 0.0008 35.0 13.0 90 103-224 80-173 (330)
272 3of7_A Regulator of chromosome 76.7 71 0.0024 34.4 17.4 18 70-89 157-174 (473)
273 3m0c_C LDL receptor, low-densi 75.8 1.2E+02 0.0042 35.1 25.6 147 134-341 482-633 (791)
274 1z68_A Fibroblast activation p 75.5 18 0.0006 41.0 12.6 82 72-173 63-147 (719)
275 2hz6_A Endoplasmic reticulum t 75.3 0.93 3.2E-05 47.7 1.6 52 156-222 19-74 (369)
276 1z68_A Fibroblast activation p 75.1 82 0.0028 35.3 18.2 112 101-226 224-354 (719)
277 3m0c_C LDL receptor, low-densi 73.9 1.4E+02 0.0047 34.7 24.4 174 102-341 405-590 (791)
278 2p9w_A MAL S 1 allergenic prot 73.3 89 0.0031 32.3 24.4 152 101-283 35-217 (334)
279 1hxn_A Hemopexin, HPX; heme, b 73.0 67 0.0023 31.0 14.3 59 133-217 27-89 (219)
280 3oyo_A Hemopexin fold protein 72.7 22 0.00074 34.7 10.7 59 134-217 127-197 (225)
281 1nr0_A Actin interacting prote 72.6 1.2E+02 0.0041 33.4 19.8 160 73-286 195-360 (611)
282 2xe4_A Oligopeptidase B; hydro 72.5 90 0.0031 35.8 17.8 98 100-216 294-398 (751)
283 1jof_A Carboxy-CIS,CIS-muconat 72.3 87 0.003 31.7 19.6 16 101-116 167-183 (365)
284 2xe4_A Oligopeptidase B; hydro 71.4 94 0.0032 35.6 17.6 98 155-279 294-398 (751)
285 1n7d_A LDL receptor, low-densi 71.1 32 0.0011 39.4 13.3 149 134-342 464-616 (699)
286 3hrp_A Uncharacterized protein 71.1 1.1E+02 0.0036 32.2 23.4 97 102-219 195-299 (409)
287 3lp9_A LS-24; SEED albumin, pl 69.9 3.2 0.00011 40.8 3.9 61 134-219 129-202 (227)
288 3v65_B Low-density lipoprotein 68.2 1.2E+02 0.004 31.5 24.8 174 101-340 96-277 (386)
289 1ofz_A Fucose-specific lectin; 68.1 1.1E+02 0.0038 31.2 15.3 125 105-251 148-279 (312)
290 3v65_B Low-density lipoprotein 65.9 1.3E+02 0.0044 31.2 25.2 176 101-341 138-319 (386)
291 2ece_A 462AA long hypothetical 65.8 1.5E+02 0.0052 32.0 18.8 122 81-219 95-238 (462)
292 1ijq_A LDL receptor, low-densi 65.0 1.2E+02 0.004 30.4 27.0 174 101-340 10-195 (316)
293 1ijq_A LDL receptor, low-densi 64.9 1.2E+02 0.004 30.4 26.3 200 70-342 31-240 (316)
294 3a0f_A Xyloglucanase; beta-pro 64.7 2E+02 0.0068 33.0 20.5 184 71-289 77-292 (763)
295 3sjl_D Methylamine dehydrogena 64.2 1.5E+02 0.005 31.2 21.0 55 271-344 310-367 (386)
296 2mad_H Methylamine dehydrogena 63.6 1.4E+02 0.0048 30.8 18.7 76 189-287 278-356 (373)
297 3lp9_A LS-24; SEED albumin, pl 61.9 14 0.00046 36.2 6.7 63 133-219 71-148 (227)
298 1ofz_A Fucose-specific lectin; 60.9 1.5E+02 0.0051 30.2 16.4 171 104-313 90-280 (312)
299 2oit_A Nucleoporin 214KDA; NH2 58.5 1.8E+02 0.0063 30.5 17.8 59 190-280 162-222 (434)
300 3v64_C Agrin; beta propeller, 58.5 1.6E+02 0.0056 29.9 26.0 176 101-341 95-276 (349)
301 1ck7_A Protein (gelatinase A); 58.2 60 0.0021 36.6 12.0 62 129-216 448-516 (631)
302 3vu4_A KMHSV2; beta-propeller 56.6 1.7E+02 0.0057 29.5 19.0 104 73-219 24-129 (355)
303 1ck7_A Protein (gelatinase A); 55.7 44 0.0015 37.8 10.3 103 81-219 453-567 (631)
304 2cn3_A Xyloglucanase, beta-1,4 53.9 2.9E+02 0.0099 31.4 18.2 87 165-254 231-322 (737)
305 1sqj_A OXG-RCBH, oligoxylogluc 53.3 3.1E+02 0.011 31.5 23.0 236 69-347 64-340 (789)
306 3kci_A Probable E3 ubiquitin-p 53.2 2.1E+02 0.0072 29.6 17.4 16 127-142 117-133 (389)
307 3sjl_D Methylamine dehydrogena 52.6 1.3E+02 0.0044 31.6 12.9 125 134-286 44-174 (386)
308 2qe8_A Uncharacterized protein 51.9 2E+02 0.0067 28.8 21.6 239 72-468 20-306 (343)
309 1a12_A RCC1, regulator of chro 49.6 2.4E+02 0.0083 29.3 18.0 18 70-89 120-137 (413)
310 3v64_C Agrin; beta propeller, 49.2 2.3E+02 0.0077 28.8 26.3 174 101-340 53-234 (349)
311 4a5s_A Dipeptidyl peptidase 4 48.5 1E+02 0.0034 35.0 12.2 70 156-226 36-109 (740)
312 3a0f_A Xyloglucanase; beta-pro 48.3 3.6E+02 0.012 30.8 24.7 228 72-348 24-292 (763)
313 3mvd_K Regulator of chromosome 47.9 2.6E+02 0.0089 29.1 21.2 17 71-89 137-153 (423)
314 2oiz_A Aromatic amine dehydrog 46.6 2.5E+02 0.0085 28.5 21.3 86 73-169 54-144 (361)
315 2be1_A Serine/threonine-protei 45.0 55 0.0019 33.9 8.3 106 156-287 20-138 (339)
316 2oit_A Nucleoporin 214KDA; NH2 44.1 3E+02 0.01 28.7 18.1 59 135-217 162-222 (434)
317 2cn3_A Xyloglucanase, beta-1,4 44.0 4E+02 0.014 30.2 23.0 85 218-314 231-321 (737)
318 1n7d_A LDL receptor, low-densi 41.6 1.4E+02 0.0049 33.8 12.0 140 101-285 475-618 (699)
319 3tc9_A Hypothetical hydrolase; 41.5 2.1E+02 0.007 30.2 12.6 141 73-254 141-290 (430)
320 3k6s_A Integrin alpha-X; cell 40.4 1.2E+02 0.0042 36.6 11.5 159 69-244 334-509 (1095)
321 3p5b_L Low density lipoprotein 39.1 3.5E+02 0.012 28.0 25.5 147 134-341 170-321 (400)
322 2j04_A TAU60, YPL007P, hypothe 38.8 4.5E+02 0.015 29.2 20.0 71 73-167 90-162 (588)
323 3vu4_A KMHSV2; beta-propeller 38.7 3.1E+02 0.011 27.4 20.3 66 245-341 206-272 (355)
324 3mvd_K Regulator of chromosome 37.9 3.3E+02 0.011 28.2 13.5 19 180-198 302-321 (423)
325 3c75_H MADH, methylamine dehyd 37.7 3.9E+02 0.013 28.2 19.7 55 271-344 349-406 (426)
326 3of7_A Regulator of chromosome 37.2 3.3E+02 0.011 28.9 13.6 18 70-89 76-93 (473)
327 4a0p_A LRP6, LRP-6, low-densit 34.8 5.1E+02 0.018 28.8 25.3 181 69-313 37-224 (628)
328 4hvt_A Ritya.17583.B, post-pro 34.0 4E+02 0.014 30.3 14.0 154 156-348 269-437 (711)
329 2j04_A TAU60, YPL007P, hypothe 31.8 5.7E+02 0.019 28.4 17.3 120 68-225 129-261 (588)
330 1a12_A RCC1, regulator of chro 29.6 4.9E+02 0.017 26.9 13.8 18 237-254 173-191 (413)
331 3c75_H MADH, methylamine dehyd 29.2 2.6E+02 0.0088 29.7 10.7 126 134-286 84-214 (426)
332 3p5b_L Low density lipoprotein 28.9 5E+02 0.017 26.8 28.2 174 101-340 92-277 (400)
333 1sqj_A OXG-RCBH, oligoxylogluc 27.1 7.4E+02 0.025 28.2 26.4 229 70-348 16-277 (789)
334 3sre_A PON1, serum paraoxonase 27.0 5.3E+02 0.018 26.4 14.8 136 73-217 54-211 (355)
335 1uii_A Geminin; human, DNA rep 25.9 1.1E+02 0.0038 24.7 5.2 36 611-658 26-61 (83)
336 2oiz_A Aromatic amine dehydrog 24.3 5.5E+02 0.019 25.7 16.0 60 156-220 31-92 (361)
337 2iu1_A EIF5, eukaryotic transl 23.8 29 0.00099 33.4 1.7 7 506-512 149-155 (208)
338 4hvt_A Ritya.17583.B, post-pro 23.3 8.4E+02 0.029 27.5 19.7 106 101-222 269-385 (711)
339 3ju4_A Endo-N-acetylneuraminid 22.7 7.1E+02 0.024 26.5 20.7 209 59-279 274-512 (670)
340 3qqz_A Putative uncharacterize 22.7 5.4E+02 0.018 25.0 26.6 206 70-339 28-252 (255)
341 1pp9_J Ubiquinol-cytochrome C 22.3 93 0.0032 23.8 3.9 37 604-646 10-46 (62)
342 2be1_A Serine/threonine-protei 21.7 1.8E+02 0.0063 29.9 7.5 102 209-343 20-133 (339)
343 3v4v_A Integrin alpha-4; cell 20.1 6E+02 0.021 28.2 11.9 157 70-244 167-342 (597)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.5e-44 Score=378.62 Aligned_cols=289 Identities=18% Similarity=0.255 Sum_probs=241.3
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcC
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG 142 (685)
.+.|.+|..|+++.+ ++.||||||. ++ ..++++++||+.+++|..++. .|.+|.+|+++++++.||||||
T Consensus 9 ~~~~~~~~~~~~~~~---~~~i~v~GG~--~~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG 78 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKV---GRLIYTAGGY--FR---QSLSYLEAYNPSNGTWLRLAD--LQVPRSGLAGCVVGGLLYAVGG 78 (308)
T ss_dssp ------------CCC---CCCEEEECCB--SS---SBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECC
T ss_pred ccCCeeeCCccccCC---CCEEEEEeCc--CC---CCcceEEEEcCCCCeEeECCC--CCcccccceEEEECCEEEEECC
Confidence 456788999999988 8999999996 22 267899999999999999965 4689999999999999999999
Q ss_pred ccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
....... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+
T Consensus 79 ~~~~~~~--~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 79 RNNSPDG--NTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWH 150 (308)
T ss_dssp EEEETTE--EEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEE
T ss_pred CcCCCCC--CeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEEEcCCCCC----cccccEEEECCCCCeEe
Confidence 8421111 2357899999999999999987 89999999999999999999998652 46899999999999999
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEE
Q 005655 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (685)
Q Consensus 223 ~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~ 302 (685)
.++++ |.+|.+|+++++++.|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|++
T Consensus 151 ~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~ 211 (308)
T 1zgk_A 151 LVAPM-----LTRRIGVGVAVLNRLLYAVGGFDGT-----------NRLNSAECYYPERNEWRMITA---MNTIRSGAGV 211 (308)
T ss_dssp ECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEECCC---CSSCCBSCEE
T ss_pred ECCCC-----CccccceEEEEECCEEEEEeCCCCC-----------CcCceEEEEeCCCCeEeeCCC---CCCccccceE
Confidence 99876 8999999999999999999998765 347899999999999999865 4789999999
Q ss_pred EEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhh
Q 005655 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEE 382 (685)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (685)
++++++||||||... ...++++++||+.+++|..+..
T Consensus 212 ~~~~~~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~---------------------------------- 248 (308)
T 1zgk_A 212 CVLHNCIYAAGGYDG---------QDQLNSVERYDVETETWTFVAP---------------------------------- 248 (308)
T ss_dssp EEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECCC----------------------------------
T ss_pred EEECCEEEEEeCCCC---------CCccceEEEEeCCCCcEEECCC----------------------------------
Confidence 999999999999864 2347999999999999997653
Q ss_pred ccccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEe
Q 005655 383 FDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVG 462 (685)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~ 462 (685)
+|.+|++|+++++
T Consensus 249 -------------------------------------------------------------------~p~~r~~~~~~~~ 261 (308)
T 1zgk_A 249 -------------------------------------------------------------------MKHRRSALGITVH 261 (308)
T ss_dssp -------------------------------------------------------------------CSSCCBSCEEEEE
T ss_pred -------------------------------------------------------------------CCCCccceEEEEE
Confidence 6899999999999
Q ss_pred cCEEEEEcCeeeccCeeeeeecccccccCCCCccEEeccCC
Q 005655 463 KDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPAS 503 (685)
Q Consensus 463 ~~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~~~~~ 503 (685)
++.|||+||... ...++++|.||+.+ +.|+.+.++.
T Consensus 262 ~~~i~v~GG~~~----~~~~~~v~~yd~~~-~~W~~~~~~p 297 (308)
T 1zgk_A 262 QGRIYVLGGYDG----HTFLDSVECYDPDT-DTWSEVTRMT 297 (308)
T ss_dssp TTEEEEECCBCS----SCBCCEEEEEETTT-TEEEEEEECS
T ss_pred CCEEEEEcCcCC----CcccceEEEEcCCC-CEEeecCCCC
Confidence 999999999753 24589999999998 8999997663
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=364.48 Aligned_cols=269 Identities=18% Similarity=0.289 Sum_probs=236.2
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
++.||||||.. . ..++++++||+.+++|..++. .|.+|.+|+++++++.||||||.... ..++++|+
T Consensus 15 ~~~i~v~GG~~--~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~ 81 (302)
T 2xn4_A 15 PKLMVVVGGQA--P---KAIRSVECYDFKEERWHQVAE--LPSRRCRAGMVYMAGLVFAVGGFNGS------LRVRTVDS 81 (302)
T ss_dssp CEEEEEECCBS--S---SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEESCBCSS------SBCCCEEE
T ss_pred CCEEEEECCCC--C---CCCCcEEEEcCcCCcEeEccc--CCcccccceEEEECCEEEEEeCcCCC------ccccceEE
Confidence 58999999952 2 256899999999999999975 46899999999999999999998643 24689999
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s 240 (685)
||+.+++|+.+++ +|.+|.+|++++++++||||||+... ..++++++||+.+++|+.++++ |.+|++|+
T Consensus 82 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 150 (302)
T 2xn4_A 82 YDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAVGGFDGS----TGLSSVEAYNIKSNEWFHVAPM-----NTRRSSVG 150 (302)
T ss_dssp EETTTTEEEEECC--CSSCCBSCEEEEETTEEEEEEEECSS----CEEEEEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred ECCCCCceeeCCC--CCccccceEEEEECCEEEEEcCCCCC----ccCceEEEEeCCCCeEeecCCC-----CCcccCce
Confidence 9999999999987 89999999999999999999998643 3589999999999999999877 88999999
Q ss_pred EEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccC
Q 005655 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (685)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (685)
++++++.|||+||+... ....++++++||+.+++|+.+.. +|.+|.+|++++++++||||||...
T Consensus 151 ~~~~~~~iyv~GG~~~~---------~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~--- 215 (302)
T 2xn4_A 151 VGVVGGLLYAVGGYDVA---------SRQCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVLNNLLYAVGGHDG--- 215 (302)
T ss_dssp EEEETTEEEEECCEETT---------TTEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBSS---
T ss_pred EEEECCEEEEEeCCCCC---------CCccccEEEEEeCCCCcEEECCC---CccccccccEEEECCEEEEECCCCC---
Confidence 99999999999998754 12467899999999999999965 4789999999999999999999864
Q ss_pred CccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhh
Q 005655 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (685)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (685)
..+.+++++||+.+++|..+..
T Consensus 216 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 237 (302)
T 2xn4_A 216 ------PLVRKSVEVYDPTTNAWRQVAD---------------------------------------------------- 237 (302)
T ss_dssp ------SSBCCCEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred ------CcccceEEEEeCCCCCEeeCCC----------------------------------------------------
Confidence 2357899999999999998753
Q ss_pred ccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeee
Q 005655 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (685)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~ 480 (685)
+|.+|++|++++.++.|||+||.... .
T Consensus 238 -------------------------------------------------~~~~r~~~~~~~~~~~i~v~GG~~~~----~ 264 (302)
T 2xn4_A 238 -------------------------------------------------MNMCRRNAGVCAVNGLLYVVGGDDGS----C 264 (302)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS----S
T ss_pred -------------------------------------------------CCCccccCeEEEECCEEEEECCcCCC----c
Confidence 68899999999999999999997532 3
Q ss_pred eeecccccccCCCCccEEec
Q 005655 481 TLDDLYSLNLSKLDEWKCII 500 (685)
Q Consensus 481 tl~D~y~ldL~kld~w~~~~ 500 (685)
.++++|.||+.+ +.|+.+.
T Consensus 265 ~~~~v~~yd~~~-~~W~~~~ 283 (302)
T 2xn4_A 265 NLASVEYYNPTT-DKWTVVS 283 (302)
T ss_dssp BCCCEEEEETTT-TEEEECS
T ss_pred ccccEEEEcCCC-CeEEECC
Confidence 589999999998 8999986
No 3
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=4.9e-43 Score=376.83 Aligned_cols=305 Identities=19% Similarity=0.251 Sum_probs=240.8
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC--CCcEEEecCCCCC-CCcceeEEEEECCEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSP-PPRSAHQAVSWKNYL 137 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~l~s~~~P-~~R~~ha~v~~~~~i 137 (685)
.++++|.+|.+|+++++ ++.||||||.. .+++|+||+. +++|+.++++ | .+|++|++++++++|
T Consensus 2 ~l~~lP~~r~~~~~~~~---~~~iyv~GG~~--------~~~~~~~d~~~~~~~W~~~~~~--p~~~R~~~~~~~~~~~l 68 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAID---NDTVYIGLGSA--------GTAWYKLDTQAKDKKWTALAAF--PGGPRDQATSAFIDGNL 68 (357)
T ss_dssp CSCCCSSCCCSCEEEEE---TTEEEEECGGG--------TTCEEEEETTSSSCCEEECCCC--TTCCCBSCEEEEETTEE
T ss_pred CCCCCCccccceEEEEE---CCEEEEEeCcC--------CCeEEEEccccCCCCeeECCCC--CCCcCccceEEEECCEE
Confidence 45789999999999998 89999999952 2489999998 4999999774 5 789999999999999
Q ss_pred EEEcCccC-CCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCC-------------
Q 005655 138 YIFGGEFT-SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR------------- 203 (685)
Q Consensus 138 yvfGG~~~-s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~------------- 203 (685)
|||||... ... ....++++|+||+.+++|+.+++.+ |.+|.+|++++++++||||||+.....
T Consensus 69 yv~GG~~~~~~~--~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 145 (357)
T 2uvk_A 69 YVFGGIGKNSEG--LTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKD 145 (357)
T ss_dssp EEECCEEECTTS--CEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred EEEcCCCCCCCc--cceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCc
Confidence 99999832 111 1346899999999999999999833 599999999999999999999753210
Q ss_pred -----------------ceeeeceEEEEEcCCCceEEeccCCCCCCCCC-ccceeEEEeCCEEEEEecccCCCCcccCCC
Q 005655 204 -----------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP-RSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (685)
Q Consensus 204 -----------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~-Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (685)
...+++++++||+.+++|+.+.++ |.+ |.+|+++++++.|||+||+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~iyv~GG~~~~-------- 212 (357)
T 2uvk_A 146 STAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES-----PWYGTAGAAVVNKGDKTWLINGEAKP-------- 212 (357)
T ss_dssp HHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC-----SSCCCBSCEEEEETTEEEEECCEEET--------
T ss_pred ccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC-----CCCCcccccEEEECCEEEEEeeecCC--------
Confidence 012568999999999999999877 655 4559999999999999998754
Q ss_pred CCCceeeeEEEEeC--CCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCcc--------ccccccCCcEEE
Q 005655 266 EKGIIHSDLWSLDP--RTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGD--------VIMSLFLNELYG 335 (685)
Q Consensus 266 ~~~~~~~dv~~yd~--~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~--------~~~~~~~ndl~~ 335 (685)
+...+++++||+ .+++|+.+..+ ..|.+|.+|++++++++||||||......... ......++++++
T Consensus 213 --~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (357)
T 2uvk_A 213 --GLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDI 289 (357)
T ss_dssp --TEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEE
T ss_pred --CcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEE
Confidence 356788999986 99999999875 33556789999999999999999864211000 000123478999
Q ss_pred EECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcc
Q 005655 336 FQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNS 415 (685)
Q Consensus 336 yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (685)
||+.+++|..+..
T Consensus 290 yd~~~~~W~~~~~------------------------------------------------------------------- 302 (357)
T 2uvk_A 290 HLWHNGKWDKSGE------------------------------------------------------------------- 302 (357)
T ss_dssp EECC---CEEEEE-------------------------------------------------------------------
T ss_pred EecCCCceeeCCC-------------------------------------------------------------------
Confidence 9999999998754
Q ss_pred eeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeeeeeecccccccCCCCc
Q 005655 416 VIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDE 495 (685)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~ 495 (685)
+|.+|++|++++.++.||||||....+ ..++|+|.|+|+. +.
T Consensus 303 ----------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~~v~~l~~~~-~~ 344 (357)
T 2uvk_A 303 ----------------------------------LSQGRAYGVSLPWNNSLLIIGGETAGG---KAVTDSVLITVKD-NK 344 (357)
T ss_dssp ----------------------------------CSSCCBSSEEEEETTEEEEEEEECGGG---CEEEEEEEEEC-C-CS
T ss_pred ----------------------------------CCCCcccceeEEeCCEEEEEeeeCCCC---CEeeeEEEEEEcC-cE
Confidence 789999999999999999999987655 3489999999998 88
Q ss_pred cEEeccC
Q 005655 496 WKCIIPA 502 (685)
Q Consensus 496 w~~~~~~ 502 (685)
|.++.+.
T Consensus 345 ~~~~~~~ 351 (357)
T 2uvk_A 345 VTVQNLE 351 (357)
T ss_dssp CEEEC--
T ss_pred eEeeecc
Confidence 9988765
No 4
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=365.10 Aligned_cols=271 Identities=17% Similarity=0.242 Sum_probs=236.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
.+.||||||.. . .+++++||+.+++|..++.+ |.+|.+|+++++++.||||||.. . ..++++|+
T Consensus 11 ~~~l~~~GG~~--~-----~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~lyv~GG~~-~------~~~~~~~~ 74 (306)
T 3ii7_A 11 HDYRIALFGGS--Q-----PQSCRYFNPKDYSWTDIRCP--FEKRRDAACVFWDNVVYILGGSQ-L------FPIKRMDC 74 (306)
T ss_dssp CCEEEEEECCS--S-----TTSEEEEETTTTEEEECCCC--SCCCBSCEEEEETTEEEEECCBS-S------SBCCEEEE
T ss_pred cceEEEEeCCC--C-----CceEEEecCCCCCEecCCCC--CcccceeEEEEECCEEEEEeCCC-C------CCcceEEE
Confidence 47899999952 1 68999999999999999764 68999999999999999999986 1 25799999
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s 240 (685)
||+.+++|+.+++ +|.+|.+|++++++++||||||.... ...++++++||+.+++|+.++.+ |.+|.+|+
T Consensus 75 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 144 (306)
T 3ii7_A 75 YNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYTSGGSEVG---NSALYLFECYDTRTESWHTKPSM-----LTQRCSHG 144 (306)
T ss_dssp EETTTTEEEEEEC--CSSCCBSCEEEEETTEEEEECCBBTT---BSCCCCEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred EeCCCCeEEECCC--CCccccceeEEEECCEEEEECCCCCC---CcEeeeEEEEeCCCCceEeCCCC-----cCCcceeE
Confidence 9999999999987 89999999999999999999998632 34689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccC
Q 005655 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (685)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (685)
++++++.|||+||+... ...+..++++++||+.+++|+.+.+ +|.+|.+|++++++++||||||....
T Consensus 145 ~~~~~~~iyv~GG~~~~-------~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-- 212 (306)
T 3ii7_A 145 MVEANGLIYVCGGSLGN-------NVSGRVLNSCEVYDPATETWTELCP---MIEARKNHGLVFVKDKIFAVGGQNGL-- 212 (306)
T ss_dssp EEEETTEEEEECCEESC-------TTTCEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCEETT--
T ss_pred EEEECCEEEEECCCCCC-------CCcccccceEEEeCCCCCeEEECCC---ccchhhcceEEEECCEEEEEeCCCCC--
Confidence 99999999999998754 1112458899999999999999975 47899999999999999999998652
Q ss_pred CccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhh
Q 005655 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (685)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (685)
..++++++||+.+++|..+..
T Consensus 213 -------~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 233 (306)
T 3ii7_A 213 -------GGLDNVEYYDIKLNEWKMVSP---------------------------------------------------- 233 (306)
T ss_dssp -------EEBCCEEEEETTTTEEEECCC----------------------------------------------------
T ss_pred -------CCCceEEEeeCCCCcEEECCC----------------------------------------------------
Confidence 347899999999999997643
Q ss_pred ccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccCeee
Q 005655 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (685)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~re~ 480 (685)
+|.+|+.|+++++++.|||+||.... .
T Consensus 234 -------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~----~ 260 (306)
T 3ii7_A 234 -------------------------------------------------MPWKGVTVKCAAVGSIVYVLAGFQGV----G 260 (306)
T ss_dssp -------------------------------------------------CSCCBSCCEEEEETTEEEEEECBCSS----S
T ss_pred -------------------------------------------------CCCCccceeEEEECCEEEEEeCcCCC----e
Confidence 68999999999999999999998633 2
Q ss_pred eeecccccccCCCCccEEeccC
Q 005655 481 TLDDLYSLNLSKLDEWKCIIPA 502 (685)
Q Consensus 481 tl~D~y~ldL~kld~w~~~~~~ 502 (685)
.++++|.||+.+ +.|+.+.++
T Consensus 261 ~~~~~~~yd~~~-~~W~~~~~~ 281 (306)
T 3ii7_A 261 RLGHILEYNTET-DKWVANSKV 281 (306)
T ss_dssp BCCEEEEEETTT-TEEEEEEEE
T ss_pred eeeeEEEEcCCC-CeEEeCCCc
Confidence 688999999999 999998765
No 5
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.1e-42 Score=359.82 Aligned_cols=271 Identities=20% Similarity=0.315 Sum_probs=237.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
++.||||||....+ ..++++++||+.+++|..++. .|.+|.+|+++++++.||||||.... ..++++|+
T Consensus 14 ~~~i~~~GG~~~~~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~l~v~GG~~~~------~~~~~~~~ 82 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQ---SPIDVVEKYDPKTQEWSFLPS--ITRKRRYVASVSLHDRIYVIGGYDGR------SRLSSVEC 82 (301)
T ss_dssp CEEEEEECCEETTT---EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSS------CBCCCEEE
T ss_pred CCEEEEEeCccCCC---cceeEEEEEcCCCCeEEeCCC--CChhhccccEEEECCEEEEEcCCCCC------ccCceEEE
Confidence 68999999943222 367899999999999999976 46789999999999999999998632 25789999
Q ss_pred EECCCCc---EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcc
Q 005655 161 LDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (685)
Q Consensus 161 yD~~t~~---W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs 237 (685)
||+.+++ |+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+.++++ |.+|.
T Consensus 83 ~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~ 151 (301)
T 2vpj_A 83 LDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMIYVSGGFDGS----RRHTSMERYDPNIDQWSMLGDM-----QTARE 151 (301)
T ss_dssp EETTCCTTCCCEEECC--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCEEEEEETTTTEEEEEEEC-----SSCCB
T ss_pred EECCCCCCCeeEECCC--CCCCccceeEEEECCEEEEEcccCCC----cccceEEEEcCCCCeEEECCCC-----CCCcc
Confidence 9999999 999977 89999999999999999999998743 3489999999999999999877 88999
Q ss_pred ceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceec
Q 005655 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (685)
Q Consensus 238 ~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~ 317 (685)
+|+++++++.|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|++++++++||||||...
T Consensus 152 ~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 152 GAGLVVASGVIYCLGGYDGL-----------NILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp SCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCS
T ss_pred cceEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCcEEeCCC---CCcccccceEEEECCEEEEEeCCCC
Confidence 99999999999999998764 467899999999999999965 4789999999999999999999865
Q ss_pred ccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhh
Q 005655 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEE 397 (685)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (685)
. ..++++++||+.+++|..+..
T Consensus 218 ~---------~~~~~v~~yd~~~~~W~~~~~------------------------------------------------- 239 (301)
T 2vpj_A 218 T---------AHLSSVEAYNIRTDSWTTVTS------------------------------------------------- 239 (301)
T ss_dssp S---------SBCCCEEEEETTTTEEEEECC-------------------------------------------------
T ss_pred C---------cccceEEEEeCCCCcEEECCC-------------------------------------------------
Confidence 2 247899999999999998753
Q ss_pred hhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeeccC
Q 005655 398 ADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIND 477 (685)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~g~ 477 (685)
+|.+|+.|+++++++.|||+||....
T Consensus 240 ----------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~-- 265 (301)
T 2vpj_A 240 ----------------------------------------------------MTTPRCYVGATVLRGRLYAIAGYDGN-- 265 (301)
T ss_dssp ----------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS--
T ss_pred ----------------------------------------------------CCCcccceeEEEECCEEEEEcCcCCC--
Confidence 68899999999999999999997532
Q ss_pred eeeeeecccccccCCCCccEEeccC
Q 005655 478 QEITLDDLYSLNLSKLDEWKCIIPA 502 (685)
Q Consensus 478 re~tl~D~y~ldL~kld~w~~~~~~ 502 (685)
..++++|.||+.+ +.|+.+..+
T Consensus 266 --~~~~~v~~yd~~~-~~W~~~~~~ 287 (301)
T 2vpj_A 266 --SLLSSIECYDPII-DSWEVVTSM 287 (301)
T ss_dssp --SBEEEEEEEETTT-TEEEEEEEE
T ss_pred --cccccEEEEcCCC-CeEEEcCCC
Confidence 2589999999998 899998665
No 6
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.3e-42 Score=367.43 Aligned_cols=278 Identities=22% Similarity=0.384 Sum_probs=235.4
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
.+.|||||| +++++|||.+++|.. ++++.|.+|.+|+++++++.||||||.............+++|+
T Consensus 4 ~~~l~~~GG-----------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 71 (315)
T 4asc_A 4 QDLIFMISE-----------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQ 71 (315)
T ss_dssp EEEEEEEET-----------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEE
T ss_pred ceEEEEEcC-----------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEE
Confidence 468999999 479999999999997 55555789999999999999999999743222211234577999
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s 240 (685)
||+.+++|+.+++ +|.+|.+|++++++++||||||..... ....++++++||+.+++|+.++++ |.+|++|+
T Consensus 72 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 143 (315)
T 4asc_A 72 FDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVVGGREIKD-GERCLDSVMCYDRLSFKWGESDPL-----PYVVYGHT 143 (315)
T ss_dssp EETTTTEEEECCC--BSSCEESCEEEEETTEEEEECCEESST-TCCBCCCEEEEETTTTEEEECCCC-----SSCCBSCE
T ss_pred ecCCCCeEEECCC--CCcchhceeEEEECCEEEEEeCCcCCC-CCcccceEEEECCCCCcEeECCCC-----CCccccee
Confidence 9999999999987 899999999999999999999986321 134689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccC
Q 005655 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (685)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (685)
+++++++|||+||+... ...++++++||+.+++|+.+.+ .|.+|.+|++++++++||||||....
T Consensus 144 ~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-- 208 (315)
T 4asc_A 144 VLSHMDLVYVIGGKGSD----------RKCLNKMCVYDPKKFEWKELAP---MQTARSLFGATVHDGRIIVAAGVTDT-- 208 (315)
T ss_dssp EEEETTEEEEECCBCTT----------SCBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEEEEECSS--
T ss_pred EEEECCEEEEEeCCCCC----------CcccceEEEEeCCCCeEEECCC---CCCchhceEEEEECCEEEEEeccCCC--
Confidence 99999999999998533 3568899999999999999875 47899999999999999999998652
Q ss_pred CccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhh
Q 005655 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (685)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (685)
..++++++||+.+++|..++.
T Consensus 209 -------~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 229 (315)
T 4asc_A 209 -------GLTSSAEVYSITDNKWAPFEA---------------------------------------------------- 229 (315)
T ss_dssp -------SEEEEEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred -------CccceEEEEECCCCeEEECCC----------------------------------------------------
Confidence 247899999999999998753
Q ss_pred ccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCEEEEEcCeeec----c
Q 005655 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEI----N 476 (685)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~Lyi~GG~~e~----g 476 (685)
+|.+|+.|+++++++.|||+||.... +
T Consensus 230 -------------------------------------------------~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 260 (315)
T 4asc_A 230 -------------------------------------------------FPQERSSLSLVSLVGTLYAIGGFATLETESG 260 (315)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEEEEEEEEECTTS
T ss_pred -------------------------------------------------CCCcccceeEEEECCEEEEECCccccCcCCc
Confidence 68999999999999999999998642 2
Q ss_pred Ce-eeeeecccccccCCCCccEEeccC
Q 005655 477 DQ-EITLDDLYSLNLSKLDEWKCIIPA 502 (685)
Q Consensus 477 ~r-e~tl~D~y~ldL~kld~w~~~~~~ 502 (685)
.. ...++|+|.||+.+ +.|+.+.+.
T Consensus 261 ~~~~~~~~~v~~yd~~~-~~W~~~~~~ 286 (315)
T 4asc_A 261 ELVPTELNDIWRYNEEE-KKWEGVLRE 286 (315)
T ss_dssp CEEEEEEEEEEEEETTT-TEEEEEESC
T ss_pred cccccccCcEEEecCCC-ChhhhhccC
Confidence 11 14689999999998 899999443
No 7
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=3.5e-42 Score=364.67 Aligned_cols=284 Identities=21% Similarity=0.376 Sum_probs=235.0
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccC
Q 005655 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145 (685)
Q Consensus 66 P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~ 145 (685)
..+|.++.+ .+.||||||. ++++|||.+++|... +++.|.+|.+|+++++++.||||||...
T Consensus 6 ~~~r~~~~~------~~~i~~~GG~-----------~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~ 67 (318)
T 2woz_A 6 DIPRHGMFV------KDLILLVNDT-----------AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYV 67 (318)
T ss_dssp SSCCCCCSE------EEEEEEECSS-----------EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC
T ss_pred cccccccee------cchhhhcccc-----------ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCccc
Confidence 356666544 3689999993 479999999999984 4445689999999999999999999643
Q ss_pred CCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
..........+++|+||+.+++|+.+++ +|.+|.+|++++++++||||||..... ...++++++||+.+++|+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 68 DEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSARCLFGLGEVDDKIYVVAGKDLQT--EASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp -------CCCBEEEEEETTTTEEEECSC--BSSCBCSCEEEEETTEEEEEEEEBTTT--CCEEEEEEEEETTTTEEEEEC
T ss_pred CccccCCCccccEEEEeCCCCcEEECCC--CCccccccceEEECCEEEEEcCccCCC--CcccceEEEEeCCCCCEeECC
Confidence 2111001234569999999999999987 899999999999999999999986421 346899999999999999998
Q ss_pred cCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 226 ~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
++ |.+|++|+++++++.|||+||+... ...++++++||+.+++|+.+.+ .|.+|.+|+++++
T Consensus 144 ~~-----p~~r~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~ 205 (318)
T 2woz_A 144 NL-----PIKVYGHNVISHNGMIYCLGGKTDD----------KKCTNRVFIYNPKKGDWKDLAP---MKTPRSMFGVAIH 205 (318)
T ss_dssp CC-----SSCEESCEEEEETTEEEEECCEESS----------SCBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE
T ss_pred CC-----CCcccccEEEEECCEEEEEcCCCCC----------CCccceEEEEcCCCCEEEECCC---CCCCcccceEEEE
Confidence 77 8899999999999999999998644 3567899999999999999975 4789999999999
Q ss_pred CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccc
Q 005655 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385 (685)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (685)
+++||||||.... ..++++++||+.+++|..+..
T Consensus 206 ~~~iyv~GG~~~~---------~~~~~~~~yd~~~~~W~~~~~------------------------------------- 239 (318)
T 2woz_A 206 KGKIVIAGGVTED---------GLSASVEAFDLKTNKWEVMTE------------------------------------- 239 (318)
T ss_dssp TTEEEEEEEEETT---------EEEEEEEEEETTTCCEEECCC-------------------------------------
T ss_pred CCEEEEEcCcCCC---------CccceEEEEECCCCeEEECCC-------------------------------------
Confidence 9999999998752 347899999999999998653
Q ss_pred cccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEecCE
Q 005655 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDT 465 (685)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~~~ 465 (685)
+|.+|+.|++++.++.
T Consensus 240 ----------------------------------------------------------------~p~~r~~~~~~~~~~~ 255 (318)
T 2woz_A 240 ----------------------------------------------------------------FPQERSSISLVSLAGS 255 (318)
T ss_dssp ----------------------------------------------------------------CSSCCBSCEEEEETTE
T ss_pred ----------------------------------------------------------------CCCcccceEEEEECCE
Confidence 6899999999999999
Q ss_pred EEEEcCeeecc--Ce---eeeeecccccccCCCCccEEec
Q 005655 466 LYVYGGMMEIN--DQ---EITLDDLYSLNLSKLDEWKCII 500 (685)
Q Consensus 466 Lyi~GG~~e~g--~r---e~tl~D~y~ldL~kld~w~~~~ 500 (685)
|||+||..... +. ...++|+|.||+.+ +.|+.+.
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~-~~W~~~~ 294 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK-KEWAGML 294 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTT-TEEEEEE
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCC-CEehhhc
Confidence 99999986421 11 13489999999999 8999983
No 8
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1e-41 Score=360.70 Aligned_cols=252 Identities=20% Similarity=0.373 Sum_probs=212.9
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecC--CCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEE
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYN--GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~--g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvf 140 (685)
.+.|.+|.+|++++. ++.||||||...+ +......+++++||+.+++|+.++++ |.+|.+|+++++++.||||
T Consensus 30 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~lyv~ 104 (315)
T 4asc_A 30 LSSQVPKNHVSLVTK---ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL--PSPRCLFGLGEALNSIYVV 104 (315)
T ss_dssp CCCCSCSSEEEEECT---TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB--SSCEESCEEEEETTEEEEE
T ss_pred CCCCCCccceEEEEE---CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC--CcchhceeEEEECCEEEEE
Confidence 345789999999988 8999999997432 22234567899999999999998764 6899999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||...... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.... ...++++++||+.+++
T Consensus 105 GG~~~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 105 GGREIKDG---ERCLDSVMCYDRLSFKWGESDP--LPYVVYGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CCEESSTT---CCBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCTT---SCBCCCEEEEETTTTE
T ss_pred eCCcCCCC---CcccceEEEECCCCCcEeECCC--CCCcccceeEEEECCEEEEEeCCCCC---CcccceEEEEeCCCCe
Confidence 99764211 1367999999999999999987 89999999999999999999998432 3468999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCccee
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~ 300 (685)
|+.++++ |.+|.+|++++++++|||+||+... ..++++++||+.+++|+.+.+ +|.+|.+|
T Consensus 177 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 237 (315)
T 4asc_A 177 WKELAPM-----QTARSLFGATVHDGRIIVAAGVTDT-----------GLTSSAEVYSITDNKWAPFEA---FPQERSSL 237 (315)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEEEEECSS-----------SEEEEEEEEETTTTEEEEECC---CSSCCBSC
T ss_pred EEECCCC-----CCchhceEEEEECCEEEEEeccCCC-----------CccceEEEEECCCCeEEECCC---CCCcccce
Confidence 9999877 8899999999999999999998765 468899999999999999975 58899999
Q ss_pred EEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEE
Q 005655 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (685)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (685)
++++++++||||||...............++++++||+.+++|..+
T Consensus 238 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 9999999999999986532111112234678999999999999976
No 9
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=2.9e-41 Score=357.70 Aligned_cols=250 Identities=16% Similarity=0.382 Sum_probs=209.4
Q ss_pred CCCCCCcceEEEEeccCCCEEEEEcCeecCCC--ceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEc
Q 005655 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGN--KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFG 141 (685)
Q Consensus 64 ~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~--~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfG 141 (685)
+.|.+|.+|++++. ++.||||||...+.. .....+++++||+.+++|..++++ |.+|.+|++++++++|||||
T Consensus 42 ~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~G 116 (318)
T 2woz_A 42 AEQIPRNHSSIVTQ---QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL--PSARCLFGLGEVDDKIYVVA 116 (318)
T ss_dssp CTTSCSSEEEEECS---SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB--SSCBCSCEEEEETTEEEEEE
T ss_pred CccCCccceEEEEE---CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC--CccccccceEEECCEEEEEc
Confidence 45688999999888 899999999643321 122445699999999999999764 68899999999999999999
Q ss_pred CccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 142 G~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
|...... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||+... ..+++++++||+.+++|
T Consensus 117 G~~~~~~----~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 117 GKDLQTE----ASLDSVLCYDPVAAKWSEVKN--LPIKVYGHNVISHNGMIYCLGGKTDD---KKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEBTTTC----CEEEEEEEEETTTTEEEEECC--CSSCEESCEEEEETTEEEEECCEESS---SCBCCCEEEEETTTTEE
T ss_pred CccCCCC----cccceEEEEeCCCCCEeECCC--CCCcccccEEEEECCEEEEEcCCCCC---CCccceEEEEcCCCCEE
Confidence 9864322 357899999999999999987 89999999999999999999998643 23689999999999999
Q ss_pred EEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeE
Q 005655 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (685)
Q Consensus 222 ~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s 301 (685)
+.++++ |.+|.+|+++++++.|||+||+... ..++++++||+.+++|+.+.. .|.+|.+|+
T Consensus 188 ~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~ 248 (318)
T 2woz_A 188 KDLAPM-----KTPRSMFGVAIHKGKIVIAGGVTED-----------GLSASVEAFDLKTNKWEVMTE---FPQERSSIS 248 (318)
T ss_dssp EEECCC-----SSCCBSCEEEEETTEEEEEEEEETT-----------EEEEEEEEEETTTCCEEECCC---CSSCCBSCE
T ss_pred EECCCC-----CCCcccceEEEECCEEEEEcCcCCC-----------CccceEEEEECCCCeEEECCC---CCCcccceE
Confidence 999876 8999999999999999999998765 467899999999999999965 578999999
Q ss_pred EEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEE
Q 005655 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (685)
Q Consensus 302 ~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (685)
+++++++||||||..........+....++++|+||+.+++|..+
T Consensus 249 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 249 LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 999999999999986532222222235689999999999999976
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=349.17 Aligned_cols=238 Identities=19% Similarity=0.279 Sum_probs=210.0
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcC
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG 142 (685)
.++|.+|.+|+++++ ++.||||||.. +. ..++++++||+.+++|+.++++ |.+|.+|+++++++.||||||
T Consensus 46 ~~~p~~r~~~~~~~~---~~~lyv~GG~~--~~--~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG 116 (302)
T 2xn4_A 46 AELPSRRCRAGMVYM---AGLVFAVGGFN--GS--LRVRTVDSYDPVKDQWTSVANM--RDRRSTLGAAVLNGLLYAVGG 116 (302)
T ss_dssp CCCSSCCBSCEEEEE---TTEEEEESCBC--SS--SBCCCEEEEETTTTEEEEECCC--SSCCBSCEEEEETTEEEEEEE
T ss_pred ccCCcccccceEEEE---CCEEEEEeCcC--CC--ccccceEEECCCCCceeeCCCC--CccccceEEEEECCEEEEEcC
Confidence 578899999999998 89999999963 22 2568999999999999999864 689999999999999999999
Q ss_pred ccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
.... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||+.... ..+++++++||+.+++|+
T Consensus 117 ~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 117 FDGS------TGLSSVEAYNIKSNEWFHVAP--MNTRRSSVGVGVVGGLLYAVGGYDVAS--RQCLSTVECYNATTNEWT 186 (302)
T ss_dssp ECSS------CEEEEEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEETTT--TEECCCEEEEETTTTEEE
T ss_pred CCCC------ccCceEEEEeCCCCeEeecCC--CCCcccCceEEEECCEEEEEeCCCCCC--CccccEEEEEeCCCCcEE
Confidence 8643 257899999999999999987 899999999999999999999986543 246899999999999999
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEE
Q 005655 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (685)
Q Consensus 223 ~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~ 302 (685)
.+..+ |.+|++|+++++++.|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|++
T Consensus 187 ~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~ 247 (302)
T 2xn4_A 187 YIAEM-----STRRSGAGVGVLNNLLYAVGGHDGP-----------LVRKSVEVYDPTTNAWRQVAD---MNMCRRNAGV 247 (302)
T ss_dssp EECCC-----SSCCBSCEEEEETTEEEEECCBSSS-----------SBCCCEEEEETTTTEEEEECC---CSSCCBSCEE
T ss_pred ECCCC-----ccccccccEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCCEeeCCC---CCCccccCeE
Confidence 99876 8899999999999999999998754 457889999999999999975 4788999999
Q ss_pred EEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
++++++||||||... ...++++++||+.+++|..++
T Consensus 248 ~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 248 CAVNGLLYVVGGDDG---------SCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECS
T ss_pred EEECCEEEEECCcCC---------CcccccEEEEcCCCCeEEECC
Confidence 999999999999864 234789999999999999865
No 11
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=2.8e-40 Score=348.67 Aligned_cols=243 Identities=19% Similarity=0.288 Sum_probs=213.7
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvf 140 (685)
...++|.+|.+|+++++ ++.||||||..........++++++||+.+++|+.++++ |.+|.+|++++++++||||
T Consensus 53 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~ 127 (308)
T 1zgk_A 53 RLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM--SVPRNRIGVGVIDGHIYAV 127 (308)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC--SSCCBTCEEEEETTEEEEE
T ss_pred ECCCCCcccccceEEEE---CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC--CcCccccEEEEECCEEEEE
Confidence 34678999999999998 899999999743223345789999999999999999764 6899999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||.... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||+.... .++++++||+.+++
T Consensus 128 GG~~~~------~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 128 GGSHGC------IHHNSVERYEPERDEWHLVAP--MLTRRIGVGVAVLNRLLYAVGGFDGTN----RLNSAECYYPERNE 195 (308)
T ss_dssp CCEETT------EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSSC----BCCCEEEEETTTTE
T ss_pred cCCCCC------cccccEEEECCCCCeEeECCC--CCccccceEEEEECCEEEEEeCCCCCC----cCceEEEEeCCCCe
Confidence 998653 357899999999999999987 899999999999999999999986543 38999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCccee
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~ 300 (685)
|+.+..+ |.+|.+|+++++++.|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|
T Consensus 196 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~ 256 (308)
T 1zgk_A 196 WRMITAM-----NTIRSGAGVCVLHNCIYAAGGYDGQ-----------DQLNSVERYDVETETWTFVAP---MKHRRSAL 256 (308)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEECCC---CSSCCBSC
T ss_pred EeeCCCC-----CCccccceEEEECCEEEEEeCCCCC-----------CccceEEEEeCCCCcEEECCC---CCCCccce
Confidence 9999876 8899999999999999999998754 457899999999999999874 57899999
Q ss_pred EEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
++++++++||||||... ...++++++||+.+++|..++.
T Consensus 257 ~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 257 GITVHQGRIYVLGGYDG---------HTFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp EEEEETTEEEEECCBCS---------SCBCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEcCcCC---------CcccceEEEEcCCCCEEeecCC
Confidence 99999999999999764 2457899999999999998865
No 12
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=348.78 Aligned_cols=243 Identities=20% Similarity=0.264 Sum_probs=214.9
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvf 140 (685)
...++|.+|.+|+++++ ++.||||||.. ...++++++||+.+++|..++++ |.+|.+|++++++++||||
T Consensus 38 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~-----~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~ 107 (306)
T 3ii7_A 38 DIRCPFEKRRDAACVFW---DNVVYILGGSQ-----LFPIKRMDCYNVVKDSWYSKLGP--PTPRDSLAACAAEGKIYTS 107 (306)
T ss_dssp ECCCCSCCCBSCEEEEE---TTEEEEECCBS-----SSBCCEEEEEETTTTEEEEEECC--SSCCBSCEEEEETTEEEEE
T ss_pred cCCCCCcccceeEEEEE---CCEEEEEeCCC-----CCCcceEEEEeCCCCeEEECCCC--CccccceeEEEECCEEEEE
Confidence 44678999999999999 89999999963 23678999999999999999774 6899999999999999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||.... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.........+++++++||+.+++
T Consensus 108 GG~~~~-----~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 108 GGSEVG-----NSALYLFECYDTRTESWHTKPS--MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp CCBBTT-----BSCCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCCCCC-----CcEeeeEEEEeCCCCceEeCCC--CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 998632 2357999999999999999987 899999999999999999999987654434568999999999999
Q ss_pred eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCccee
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~ 300 (685)
|+.++++ |.+|.+|++++++++|||+||+... ..++++++||+.+++|+.+.. +|.+|.+|
T Consensus 181 W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 241 (306)
T 3ii7_A 181 WTELCPM-----IEARKNHGLVFVKDKIFAVGGQNGL-----------GGLDNVEYYDIKLNEWKMVSP---MPWKGVTV 241 (306)
T ss_dssp EEEECCC-----SSCCBSCEEEEETTEEEEECCEETT-----------EEBCCEEEEETTTTEEEECCC---CSCCBSCC
T ss_pred EEECCCc-----cchhhcceEEEECCEEEEEeCCCCC-----------CCCceEEEeeCCCCcEEECCC---CCCCccce
Confidence 9999876 8899999999999999999998764 567899999999999999965 57899999
Q ss_pred EEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
++++++++||||||... ...++++++||+.+++|..++.
T Consensus 242 ~~~~~~~~i~v~GG~~~---------~~~~~~~~~yd~~~~~W~~~~~ 280 (306)
T 3ii7_A 242 KCAAVGSIVYVLAGFQG---------VGRLGHILEYNTETDKWVANSK 280 (306)
T ss_dssp EEEEETTEEEEEECBCS---------SSBCCEEEEEETTTTEEEEEEE
T ss_pred eEEEECCEEEEEeCcCC---------CeeeeeEEEEcCCCCeEEeCCC
Confidence 99999999999999864 2357899999999999999875
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.5e-39 Score=336.73 Aligned_cols=239 Identities=19% Similarity=0.275 Sum_probs=210.5
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc---EEEecCCCCCCCcceeEEEEECCEE
Q 005655 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPPRSAHQAVSWKNYL 137 (685)
Q Consensus 61 ~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~---W~~l~s~~~P~~R~~ha~v~~~~~i 137 (685)
...++|.+|.+|++++. ++.||||||.. + ...++++++||+.+++ |+.++++ |.+|.+|++++++++|
T Consensus 45 ~~~~~p~~r~~~~~~~~---~~~l~v~GG~~--~--~~~~~~~~~~d~~~~~~~~W~~~~~~--p~~r~~~~~~~~~~~l 115 (301)
T 2vpj_A 45 FLPSITRKRRYVASVSL---HDRIYVIGGYD--G--RSRLSSVECLDYTADEDGVWYSVAPM--NVRRGLAGATTLGDMI 115 (301)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCBC--S--SCBCCCEEEEETTCCTTCCCEEECCC--SSCCBSCEEEEETTEE
T ss_pred eCCCCChhhccccEEEE---CCEEEEEcCCC--C--CccCceEEEEECCCCCCCeeEECCCC--CCCccceeEEEECCEE
Confidence 34568889999999998 89999999963 2 2367899999999999 9999764 6899999999999999
Q ss_pred EEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 138 yvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
|||||.... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||+|||+... .+++++++||+.
T Consensus 116 yv~GG~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~ 183 (301)
T 2vpj_A 116 YVSGGFDGS------RRHTSMERYDPNIDQWSMLGD--MQTAREGAGLVVASGVIYCLGGYDGL----NILNSVEKYDPH 183 (301)
T ss_dssp EEECCBCSS------CBCCEEEEEETTTTEEEEEEE--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCCEEEEETT
T ss_pred EEEcccCCC------cccceEEEEcCCCCeEEECCC--CCCCcccceEEEECCEEEEECCCCCC----cccceEEEEeCC
Confidence 999998643 247899999999999999987 89999999999999999999998653 268999999999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCc
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R 297 (685)
+++|+.+.++ |.+|.+|+++++++.|||+||.... ..++++++||+.+++|+.+.. +|.+|
T Consensus 184 ~~~W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r 244 (301)
T 2vpj_A 184 TGHWTNVTPM-----ATKRSGAGVALLNDHIYVVGGFDGT-----------AHLSSVEAYNIRTDSWTTVTS---MTTPR 244 (301)
T ss_dssp TTEEEEECCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEEECC---CSSCC
T ss_pred CCcEEeCCCC-----CcccccceEEEECCEEEEEeCCCCC-----------cccceEEEEeCCCCcEEECCC---CCCcc
Confidence 9999999776 8899999999999999999998765 347889999999999999965 47899
Q ss_pred ceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 298 ~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.+|++++++++||||||.... ..++++++||+.+++|..++.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDGN---------SLLSSIECYDPIIDSWEVVTS 286 (301)
T ss_dssp BSCEEEEETTEEEEECCBCSS---------SBEEEEEEEETTTTEEEEEEE
T ss_pred cceeEEEECCEEEEEcCcCCC---------cccccEEEEcCCCCeEEEcCC
Confidence 999999999999999997642 246899999999999998865
No 14
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=5.4e-38 Score=367.53 Aligned_cols=243 Identities=13% Similarity=0.218 Sum_probs=203.1
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEec-CC---CCCCCcceeEEEEE--CCE
Q 005655 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SP---NSPPPRSAHQAVSW--KNY 136 (685)
Q Consensus 63 ~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s~---~~P~~R~~ha~v~~--~~~ 136 (685)
..+|.+|.+|+++ + ++.||||||.. + ..++++++||+.+++|..++ ++ ..|.+|++|+++++ ++.
T Consensus 383 ~~~p~rr~g~~~~-~---~~~iyv~GG~~--~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ 453 (695)
T 2zwa_A 383 ECPINRKFGDVDV-A---GNDVFYMGGSN--P---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ 453 (695)
T ss_dssp CCTTCCBSCEEEE-C---SSCEEEECCBS--S---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE
T ss_pred CCCCCCceeEEEE-E---CCEEEEECCCC--C---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE
Confidence 4456677776655 5 78999999963 2 36789999999999999998 52 36899999999999 999
Q ss_pred EEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEE
Q 005655 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (685)
Q Consensus 137 iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (685)
||||||..... ..++++|+||+.+++|+.+++ +|.+|++|+++++ +++||||||+.... ++++||
T Consensus 454 lyv~GG~~~~~-----~~~~dv~~yd~~t~~W~~~~~--~p~~R~~h~~~~~~~~~iyv~GG~~~~~-------~v~~yd 519 (695)
T 2zwa_A 454 LLLIGGRKAPH-----QGLSDNWIFDMKTREWSMIKS--LSHTRFRHSACSLPDGNVLILGGVTEGP-------AMLLYN 519 (695)
T ss_dssp EEEECCBSSTT-----CBCCCCEEEETTTTEEEECCC--CSBCCBSCEEEECTTSCEEEECCBCSSC-------SEEEEE
T ss_pred EEEEcCCCCCC-----CccccEEEEeCCCCcEEECCC--CCCCcccceEEEEcCCEEEEECCCCCCC-------CEEEEE
Confidence 99999986542 257999999999999999987 8999999999997 99999999986532 899999
Q ss_pred cCCCceEEeccCCCCCCCCCccceeEEEeC---CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce------eEE
Q 005655 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQ---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE------WSK 286 (685)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~------W~~ 286 (685)
+.+++|+.+.+. +.+|.+|++|++++++ ++|||+||+... ....++++|+||+.+++ |+.
T Consensus 520 ~~t~~W~~~~~~--g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~---------~~~~~~~v~~yd~~~~~w~~~~~W~~ 588 (695)
T 2zwa_A 520 VTEEIFKDVTPK--DEFFQNSLVSAGLEFDPVSKQGIILGGGFMD---------QTTVSDKAIIFKYDAENATEPITVIK 588 (695)
T ss_dssp TTTTEEEECCCS--SGGGGSCCBSCEEEEETTTTEEEEECCBCTT---------SSCBCCEEEEEEECTTCSSCCEEEEE
T ss_pred CCCCceEEccCC--CCCCCcccceeEEEEeCCCCEEEEECCcCCC---------CCeeeCcEEEEEccCCccccceEEEE
Confidence 999999999874 3458999999988875 899999998654 12567899999999999 898
Q ss_pred eecCCCCCCCcceeEEEEEC-CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 287 VKKIGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 287 ~~~~g~~P~~R~g~s~~~~~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
+..+ +|.+|.+|++++++ ++||||||...... ....+++++||+.+++|..+.
T Consensus 589 ~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 589 KLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGL------FDRTNSIISLDPLSETLTSIP 642 (695)
T ss_dssp EEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCC------CCTTTSEEEEETTTTEEEECC
T ss_pred cCCC--CCCCcccceEEEeCCCEEEEECCccCCCC------CCCCCeEEEEECCCCeEEEee
Confidence 8763 35799999999998 99999999864211 135799999999999999543
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=3.1e-35 Score=315.95 Aligned_cols=264 Identities=17% Similarity=0.213 Sum_probs=204.5
Q ss_pred cCCCCC-CCCcceEEEEeccCCCEEEEEcCeec-CCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEE
Q 005655 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFY-NGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (685)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~p~~~~~L~vfGG~~~-~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (685)
...++| .+|.+|+++++ ++.||||||... .......++++++||+.+++|+.++++. |.+|.+|++++++++||
T Consensus 47 ~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iy 122 (357)
T 2uvk_A 47 ALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAY 122 (357)
T ss_dssp ECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEE
T ss_pred ECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEE
Confidence 445678 89999999999 899999999732 2223457899999999999999998876 79999999999999999
Q ss_pred EEcCccCCCC----------------------------CccccccCeEEEEECCCCcEEEcccCCCCCCC-ccceEEEEC
Q 005655 139 IFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR-SGHRMVLYK 189 (685)
Q Consensus 139 vfGG~~~s~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R-sgh~~v~~~ 189 (685)
||||...... ...+..++++++||+.+++|+.+.+ +|.+| .+|++++++
T Consensus 123 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~p~~~~~~~~~~~~~ 200 (357)
T 2uvk_A 123 VTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE--SPWYGTAGAAVVNKG 200 (357)
T ss_dssp EEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE--CSSCCCBSCEEEEET
T ss_pred EEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC--CCCCCcccccEEEEC
Confidence 9999753210 0001246899999999999999987 77665 559999999
Q ss_pred CEEEEEccccCCCCceeeeceEEEEEc--CCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccC----
Q 005655 190 HKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN---- 263 (685)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~---- 263 (685)
++||||||....+ ...+++++||+ .+++|+.+..++. |.+|.+|++++++++|||+||+... ....
T Consensus 201 ~~iyv~GG~~~~~---~~~~~v~~~d~d~~~~~W~~~~~~~~---~~~~~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~ 272 (357)
T 2uvk_A 201 DKTWLINGEAKPG---LRTDAVFELDFTGNNLKWNKLAPVSS---PDGVAGGFAGISNDSLIFAGGAGFK--GSRENYQN 272 (357)
T ss_dssp TEEEEECCEEETT---EECCCEEEEECC---CEEEECCCSST---TTCCBSCEEEEETTEEEEECCEECT--THHHHHHT
T ss_pred CEEEEEeeecCCC---cccCceEEEEecCCCCcEEecCCCCC---CcccccceEEEECCEEEEEcCcccc--CCcccccc
Confidence 9999999986542 35789999987 8999999987732 5667789999999999999998642 0000
Q ss_pred -C---CCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 264 -Q---SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 264 -~---~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
. ......+.++++||+.+++|+.+.. +|.+|.+|++++++++||||||.+.. ...+++|++|++.
T Consensus 273 g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~v~~l~~~ 341 (357)
T 2uvk_A 273 GKNYAHEGLKKSYSTDIHLWHNGKWDKSGE---LSQGRAYGVSLPWNNSLLIIGGETAG--------GKAVTDSVLITVK 341 (357)
T ss_dssp TCSSTTTTCCCEECCEEEECC---CEEEEE---CSSCCBSSEEEEETTEEEEEEEECGG--------GCEEEEEEEEEC-
T ss_pred cceeccccccceeeEEEEecCCCceeeCCC---CCCCcccceeEEeCCEEEEEeeeCCC--------CCEeeeEEEEEEc
Confidence 0 0112345789999999999999975 47899999999999999999998652 2347999999999
Q ss_pred CCcEEEEEec
Q 005655 340 NHRWYPLELR 349 (685)
Q Consensus 340 t~~W~~l~~~ 349 (685)
+++|..+.+.
T Consensus 342 ~~~~~~~~~~ 351 (357)
T 2uvk_A 342 DNKVTVQNLE 351 (357)
T ss_dssp CCSCEEEC--
T ss_pred CcEeEeeecc
Confidence 9999987764
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.1e-32 Score=322.45 Aligned_cols=242 Identities=14% Similarity=0.153 Sum_probs=202.0
Q ss_pred CCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcc-c---CCCCCCCccceEEEE--CCEE
Q 005655 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN-L---KGCPSPRSGHRMVLY--KHKI 192 (685)
Q Consensus 119 ~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~-~---~g~P~~Rsgh~~v~~--~~~l 192 (685)
+..|.+|++|+++ +++.||||||... . .++++|+||+.+++|+.++ + ..+|.+|++|+++++ +++|
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~---~----~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l 454 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP---Y----RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL 454 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS---S----BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC---C----CcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence 4456667666544 8999999999765 1 4689999999999999998 4 237999999999999 9999
Q ss_pred EEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCcee
Q 005655 193 IVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (685)
Q Consensus 193 yv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (685)
|||||..... ..++++|+||+.+++|+.+.++ |.+|++|+++++ ++.|||+||+... .
T Consensus 455 yv~GG~~~~~---~~~~dv~~yd~~t~~W~~~~~~-----p~~R~~h~~~~~~~~~iyv~GG~~~~-----------~-- 513 (695)
T 2zwa_A 455 LLIGGRKAPH---QGLSDNWIFDMKTREWSMIKSL-----SHTRFRHSACSLPDGNVLILGGVTEG-----------P-- 513 (695)
T ss_dssp EEECCBSSTT---CBCCCCEEEETTTTEEEECCCC-----SBCCBSCEEEECTTSCEEEECCBCSS-----------C--
T ss_pred EEEcCCCCCC---CccccEEEEeCCCCcEEECCCC-----CCCcccceEEEEcCCEEEEECCCCCC-----------C--
Confidence 9999986543 2689999999999999999877 899999999996 9999999999765 1
Q ss_pred eeEEEEeCCCceeEEeecCCCCCCCcceeEEEEEC---CeEEEecceecccCCccccccccCCcEEEEECCCCc------
Q 005655 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR------ 342 (685)
Q Consensus 272 ~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~---~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~------ 342 (685)
++++||+.+++|+.+...+..|.+|.+|++++++ ++||||||..... ..+++++|+||+.+++
T Consensus 514 -~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~-------~~~~~~v~~yd~~~~~w~~~~~ 585 (695)
T 2zwa_A 514 -AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ-------TTVSDKAIIFKYDAENATEPIT 585 (695)
T ss_dssp -SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS-------SCBCCEEEEEEECTTCSSCCEE
T ss_pred -CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC-------CeeeCcEEEEEccCCccccceE
Confidence 8999999999999999877788999999988876 8999999985421 2457999999999999
Q ss_pred EEEEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeecccc
Q 005655 343 WYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGV 422 (685)
Q Consensus 343 W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (685)
|..+...
T Consensus 586 W~~~~~~------------------------------------------------------------------------- 592 (695)
T 2zwa_A 586 VIKKLQH------------------------------------------------------------------------- 592 (695)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred EEEcCCC-------------------------------------------------------------------------
Confidence 5554430
Q ss_pred ccccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEEec-CEEEEEcCeeeccCeeeeeecccccccCCCCccEEe
Q 005655 423 LAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGK-DTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (685)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v~~-~~Lyi~GG~~e~g~re~tl~D~y~ldL~kld~w~~~ 499 (685)
.|.+|++|++++++ +.|||+||....+. ...++++|.||+.+ +.|+.+
T Consensus 593 ---------------------------p~~~R~~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~t-~~W~~~ 641 (695)
T 2zwa_A 593 ---------------------------PLFQRYGSQIKYITPRKLLIVGGTSPSGL-FDRTNSIISLDPLS-ETLTSI 641 (695)
T ss_dssp ---------------------------GGGCCBSCEEEEEETTEEEEECCBCSSCC-CCTTTSEEEEETTT-TEEEEC
T ss_pred ---------------------------CCCCcccceEEEeCCCEEEEECCccCCCC-CCCCCeEEEEECCC-CeEEEe
Confidence 25789999999999 99999999863331 13589999999998 899953
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=4.5e-31 Score=307.28 Aligned_cols=307 Identities=11% Similarity=0.019 Sum_probs=220.9
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCC--CceeeeccEEEEEcCCCcEEEecCCCCCCCccee--EEEE-ECCEEEEE
Q 005655 66 PSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAH--QAVS-WKNYLYIF 140 (685)
Q Consensus 66 P~~R~~~s~~~~p~~~~~L~vfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~h--a~v~-~~~~iyvf 140 (685)
|.||.+++++++|. +++||||||...+. ......+.+++||+.+++|+.++.++ .+|..| ++++ .+++|||+
T Consensus 183 ~~P~~~~~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~--~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 183 DLPIVPAAAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV--TKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp ECSSCCSEEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE--CSCCCSSCEEEECTTSCEEEE
T ss_pred cCCCCceeEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC--CCCCCccccccCCCCCCEEEe
Confidence 34556777777753 58999999964321 11123457999999999999887654 445444 3444 48999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
||... .++++||+.+++|+.++. ||.+|.+|+++++ +++||||||..... ..++++++||+.++
T Consensus 260 GG~~~----------~~v~~yd~~t~~W~~~~~--~~~~R~~~s~~~~~dg~iyv~GG~~~~~---~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 260 GGNDA----------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTIGGSWSGG---VFEKNGEVYSPSSK 324 (656)
T ss_dssp CSSST----------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEECCCCCSS---SCCCCEEEEETTTT
T ss_pred CCCCC----------CceEEecCcCCceeECCC--CCccccccceEEecCCeEEEEeCcccCC---cccccceEeCCCCC
Confidence 99743 379999999999999987 8999999999999 99999999954322 25789999999999
Q ss_pred ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCC----CC
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP----PG 295 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~----P~ 295 (685)
+|+.++.....+++.+|.. +++.+++.||++||.++... .....+++++||+.++.|......... +.
T Consensus 325 ~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~-------~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVF-------QAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp EEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEE-------ECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred cceeCCCcccccccccccc-ceeecCCceEEEECCCCcEE-------EecCccceeeeecCCcceeecCCccccccccCC
Confidence 9999854322222455543 55567999999999875410 012356899999999998864332111 11
Q ss_pred CcceeEEEE---ECCeEEEecceecccCCccccccccCC---cEEEEECCCCcEEEEEecCCCchhhhhccccccCCCch
Q 005655 296 PRAGFSMCV---HKKRALLFGGVVDMEMKGDVIMSLFLN---ELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (685)
Q Consensus 296 ~R~g~s~~~---~~~~iyvfGG~~~~~~~~~~~~~~~~n---dl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (685)
++..+++++ ++++||||||...... ...++ .|++||+.++.|..+.. .
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~------~~~~~~~~~v~~yd~~~~~W~~~~~-~------------------- 450 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQD------SDATTNAHIITLGEPGTSPNTVFAS-N------------------- 450 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSS------SBCCCCEEEEECCSTTSCCEEEECT-T-------------------
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCC------CCcCCcceEEEcCCCCCCCeeEEcc-C-------------------
Confidence 233444443 4899999999753211 12234 79999999999997651 0
Q ss_pred hhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeeccccccccCCCCCCcCcccccccccCCCCCC
Q 005655 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (685)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (685)
.
T Consensus 451 -------------------------------------------------------------------------------~ 451 (656)
T 1k3i_A 451 -------------------------------------------------------------------------------G 451 (656)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCCCCcceeeEEe-cCEEEEEcCeeecc--CeeeeeecccccccCCCCccEEeccCCh
Q 005655 450 KPCGRINSCMVVG-KDTLYVYGGMMEIN--DQEITLDDLYSLNLSKLDEWKCIIPASE 504 (685)
Q Consensus 450 ~P~~R~n~~~~v~-~~~Lyi~GG~~e~g--~re~tl~D~y~ldL~kld~w~~~~~~~~ 504 (685)
||.+|..|+++++ +++|||+||..... +....+++++.||+.+ +.|+.+..+..
T Consensus 452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t-~~W~~~~~~~~ 508 (656)
T 1k3i_A 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ-DTFYKQNPNSI 508 (656)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG-TEEEECCCCSS
T ss_pred CCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC-CceeecCCCCC
Confidence 7999999999888 99999999974210 1224589999999988 99999877644
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.96 E-value=1.1e-29 Score=295.77 Aligned_cols=257 Identities=10% Similarity=0.051 Sum_probs=182.4
Q ss_pred CCCCCCcce--EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEE
Q 005655 64 PAPSPRSNC--SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIF 140 (685)
Q Consensus 64 ~~P~~R~~~--s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvf 140 (685)
.+|.+|..| ++++.+ +++|||+||.. . +++++||+.+++|..++++ |.+|.+|+++++ +++|||+
T Consensus 236 ~~~~~~~~~~~~~~~~~--~g~lyv~GG~~--~------~~v~~yd~~t~~W~~~~~~--~~~R~~~s~~~~~dg~iyv~ 303 (656)
T 1k3i_A 236 VTVTKHDMFCPGISMDG--NGQIVVTGGND--A------KKTSLYDSSSDSWIPGPDM--QVARGYQSSATMSDGRVFTI 303 (656)
T ss_dssp EEECSCCCSSCEEEECT--TSCEEEECSSS--T------TCEEEEEGGGTEEEECCCC--SSCCSSCEEEECTTSCEEEE
T ss_pred ccCCCCCCccccccCCC--CCCEEEeCCCC--C------CceEEecCcCCceeECCCC--CccccccceEEecCCeEEEE
Confidence 355566544 355544 79999999952 1 2799999999999999764 689999999999 9999999
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCC---CCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g---~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
||..... ..++++++||+.+++|+.++..+ ++.+|. +++++++++||+|||..+........+++++||+.
T Consensus 304 GG~~~~~-----~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 304 GGSWSGG-----VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp CCCCCSS-----SCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred eCcccCC-----cccccceEeCCCCCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 9954322 24789999999999999985321 455554 35666799999999986532112246899999999
Q ss_pred CCceEEeccCCCCC--CCCCccceeEEE---eCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC
Q 005655 218 QFKWQEIKPRFGSM--WPSPRSGFQFFV---YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (685)
Q Consensus 218 t~~W~~v~~~~~~~--~P~~Rs~~s~~~---~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~ 292 (685)
++.|.......... .+.++..++++. ++++|||+||.... .. .........+++||+.+++|..+. .+.
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~--~~---~~~~~~~~~v~~yd~~~~~W~~~~-~~~ 451 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY--QD---SDATTNAHIITLGEPGTSPNTVFA-SNG 451 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS--SS---SBCCCCEEEEECCSTTSCCEEEEC-TTC
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC--CC---CCcCCcceEEEcCCCCCCCeeEEc-cCC
Confidence 99987643321000 011233444443 48999999997532 00 000111237899999999999987 234
Q ss_pred CCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 293 ~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
+|.+|.+|+++++ +++|||+||........ .....+++++||+.+++|..+.
T Consensus 452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~---~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFE---DSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTC---CCSBCCCCEEEEGGGTEEEECC
T ss_pred CCCCcccCCeEECCCCCEEEECCcccCcCcC---CCCcccceEEEcCCCCceeecC
Confidence 6889999999988 99999999975321000 1345789999999999999754
No 19
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.76 E-value=0.0019 Score=64.91 Aligned_cols=162 Identities=16% Similarity=0.169 Sum_probs=109.8
Q ss_pred cceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCc
Q 005655 125 RSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204 (685)
Q Consensus 125 R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~ 204 (685)
-+-+.+...++.||+..|.... +.+.++|+.|++=..-.. +|..-.+.+++..+++||+....
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~---------S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~------ 83 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR---------SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR------ 83 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS---------CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS------
T ss_pred cccccEEEECCEEEEECCCCCC---------ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee------
Confidence 3445667778999999996542 578999999997655444 56666888899999999998653
Q ss_pred eeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCcee
Q 005655 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (685)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (685)
.+.+++||+.+.+-.. .. |.+..|.+++..++.||+.-| + +.++++||.+.+-
T Consensus 84 ---~~~v~v~D~~tl~~~~--ti-----~~~~~Gwglt~dg~~L~vSdg-s----------------~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 84 ---NHEGFVYDLATLTPRA--RF-----RYPGEGWALTSDDSHLYMSDG-T----------------AVIRKLDPDTLQQ 136 (243)
T ss_dssp ---SSEEEEEETTTTEEEE--EE-----ECSSCCCEEEECSSCEEEECS-S----------------SEEEEECTTTCCE
T ss_pred ---CCEEEEEECCcCcEEE--EE-----eCCCCceEEeeCCCEEEEECC-C----------------CeEEEEeCCCCeE
Confidence 4789999998875433 22 223356777777888988765 3 2489999998765
Q ss_pred EEeecCCCCCCC-cceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 285 SKVKKIGMPPGP-RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 285 ~~~~~~g~~P~~-R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
...-..+..+.+ +.---+.+.+++||+--- ..++|.+.|+.+.+=.
T Consensus 137 ~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw--------------~s~~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 137 VGSIKVTAGGRPLDNLNELEWVNGELLANVW--------------LTSRIARIDPASGKVV 183 (243)
T ss_dssp EEEEECEETTEECCCEEEEEEETTEEEEEET--------------TTTEEEEECTTTCBEE
T ss_pred EEEEEEccCCcccccceeeEEeCCEEEEEEC--------------CCCeEEEEECCCCCEE
Confidence 544332222222 111235566888774321 2578999999988643
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.74 E-value=0.019 Score=59.75 Aligned_cols=192 Identities=14% Similarity=0.065 Sum_probs=113.1
Q ss_pred ccEEEEEcCCCcEEEecC---CCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcE-EEcccCCC
Q 005655 101 GDLYRYDVEKQEWKVISS---PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW-EQLNLKGC 176 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s---~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W-~~~~~~g~ 176 (685)
+.|.+||+.++++...-. ...+.....+.+++.++++||.... .+.+.++|+.|.+- ..++.
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----------~~~v~viD~~t~~~~~~i~~--- 82 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----------SHVIFAIDINTFKEVGRITG--- 82 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----------GTEEEEEETTTCCEEEEEEC---
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----------CCEEEEEECcccEEEEEcCC---
Confidence 578999999998864210 0123444556777789999998752 25799999998876 33432
Q ss_pred CCCCccceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEE-eccCCCCCCCCCccceeEEEeCCEEEEEec-
Q 005655 177 PSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVYQDEVFLYGG- 253 (685)
Q Consensus 177 P~~Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG- 253 (685)
...-+.+++ .+++||+...+ .+.|.+||+.+.+-.. ++... .... ...-+.+++.++.||+..-
T Consensus 83 --~~~p~~i~~~~~g~lyv~~~~---------~~~v~~iD~~t~~~~~~i~~g~-~~~~-~~~p~~i~~~~~~lyv~~~~ 149 (328)
T 3dsm_A 83 --FTSPRYIHFLSDEKAYVTQIW---------DYRIFIINPKTYEITGYIECPD-MDME-SGSTEQMVQYGKYVYVNCWS 149 (328)
T ss_dssp --CSSEEEEEEEETTEEEEEEBS---------CSEEEEEETTTTEEEEEEECTT-CCTT-TCBCCCEEEETTEEEEEECT
T ss_pred --CCCCcEEEEeCCCeEEEEECC---------CCeEEEEECCCCeEEEEEEcCC-cccc-CCCcceEEEECCEEEEEcCC
Confidence 122234444 57899997642 3679999999887543 32210 0000 0022244447889998852
Q ss_pred ccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCc
Q 005655 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (685)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (685)
.. +.+.++|+.+.+.......+..| +.+++. ++++|+.......... . ..-.+.
T Consensus 150 ~~----------------~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~---~-~~~~~~ 204 (328)
T 3dsm_A 150 YQ----------------NRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSP---Y-GYEAPS 204 (328)
T ss_dssp TC----------------CEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCS---S-CBCCCE
T ss_pred CC----------------CEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCc---c-ccCCce
Confidence 22 34889999988766554433322 233333 5787776532110000 0 000367
Q ss_pred EEEEECCCCcEE
Q 005655 333 LYGFQLDNHRWY 344 (685)
Q Consensus 333 l~~yd~~t~~W~ 344 (685)
|++||+.+.+..
T Consensus 205 v~~id~~t~~v~ 216 (328)
T 3dsm_A 205 LYRIDAETFTVE 216 (328)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCeEE
Confidence 999999887644
No 21
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.68 E-value=0.013 Score=61.66 Aligned_cols=198 Identities=11% Similarity=0.090 Sum_probs=109.1
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCCC-----CCcceeEEEEECCEEEEEcCccC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP-----PPRSAHQAVSWKNYLYIFGGEFT 145 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P-----~~R~~ha~v~~~~~iyvfGG~~~ 145 (685)
+.++. ++.||+.... +.|++||+.++ .|+.-.....+ ......+.++.++.||+...
T Consensus 48 ~p~v~---~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 111 (376)
T 3q7m_A 48 HPALA---DNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE--- 111 (376)
T ss_dssp CCEEE---TTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET---
T ss_pred ccEEE---CCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC---
Confidence 44555 7888887641 36899999876 47754322111 12233445556888988543
Q ss_pred CCCCccccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--e
Q 005655 146 SPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--W 221 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W 221 (685)
-..++.||..+++ |+.-... ......++.++.||+..+ ...|+.||+.+.+ |
T Consensus 112 ---------~g~l~a~d~~tG~~~W~~~~~~-----~~~~~p~~~~~~v~v~~~----------~g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 112 ---------KAQVYALNTSDGTVAWQTKVAG-----EALSRPVVSDGLVLIHTS----------NGQLQALNEADGAVKW 167 (376)
T ss_dssp ---------TSEEEEEETTTCCEEEEEECSS-----CCCSCCEEETTEEEEECT----------TSEEEEEETTTCCEEE
T ss_pred ---------CCEEEEEECCCCCEEEEEeCCC-----ceEcCCEEECCEEEEEcC----------CCeEEEEECCCCcEEE
Confidence 1469999998875 7653321 112233556787777443 2468999998765 8
Q ss_pred EEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCC--CCCCCc
Q 005655 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIG--MPPGPR 297 (685)
Q Consensus 222 ~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g--~~P~~R 297 (685)
..-...+. ...+...+.++.++.||+ |...+ .++.||+.+. .|+...... .....|
T Consensus 168 ~~~~~~~~---~~~~~~~~~~~~~~~v~~-g~~~g----------------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 168 TVNLDMPS---LSLRGESAPTTAFGAAVV-GGDNG----------------RVSAVLMEQGQMIWQQRISQATGSTEIDR 227 (376)
T ss_dssp EEECCC--------CCCCCCEEETTEEEE-CCTTT----------------EEEEEETTTCCEEEEEECCC---------
T ss_pred EEeCCCCc---eeecCCCCcEEECCEEEE-EcCCC----------------EEEEEECCCCcEEEEEecccCCCCccccc
Confidence 76543310 111222344455776665 43322 3788888654 677643210 000001
Q ss_pred ---ceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCC--cEEE
Q 005655 298 ---AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (685)
Q Consensus 298 ---~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (685)
...+.++.++.+|+.+. ...|++||+.+. .|..
T Consensus 228 ~~~~~~~p~~~~~~v~~~~~---------------~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 228 LSDVDTTPVVVNGVVFALAY---------------NGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp --CCCCCCEEETTEEEEECT---------------TSCEEEEETTTCCEEEEE
T ss_pred ccccCCCcEEECCEEEEEec---------------CcEEEEEECCCCcEEeec
Confidence 22334556777777542 134889998766 5653
No 22
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.68 E-value=0.03 Score=58.87 Aligned_cols=185 Identities=15% Similarity=0.156 Sum_probs=103.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.||+... .+.|++||+.+++ |+.-.... ...+.++.++.||+..+ -..+
T Consensus 103 ~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~-----~~~~p~~~~~~v~v~~~------------~g~l 155 (376)
T 3q7m_A 103 GGHVYIGSE----------KAQVYALNTSDGTVAWQTKVAGE-----ALSRPVVSDGLVLIHTS------------NGQL 155 (376)
T ss_dssp TTEEEEEET----------TSEEEEEETTTCCEEEEEECSSC-----CCSCCEEETTEEEEECT------------TSEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEEeCCCc-----eEcCCEEECCEEEEEcC------------CCeE
Confidence 677777543 1369999998774 76533211 12233455788887543 1468
Q ss_pred EEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC--ceEEeccCCCCCCCC
Q 005655 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPS 234 (685)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~ 234 (685)
+.||+.+++ |..-........+.....++.++.||+ |.. ...++.||+.+. .|+.-...+.+....
T Consensus 156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~-g~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 225 (376)
T 3q7m_A 156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVV-GGD---------NGRVSAVLMEQGQMIWQQRISQATGSTEI 225 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEE-CCT---------TTEEEEEETTTCCEEEEEECCC-------
T ss_pred EEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEE-EcC---------CCEEEEEECCCCcEEEEEecccCCCCccc
Confidence 999998875 876543211112223344556777776 321 246889998765 476554331110000
Q ss_pred Cc---cceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCCCcceeEEEEECCeE
Q 005655 235 PR---SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (685)
Q Consensus 235 ~R---s~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~~R~g~s~~~~~~~i 309 (685)
.+ .....++.++.||+.+ +.+. +++||+.+. .|..... ...+.++.+++|
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~-~~g~----------------l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l 280 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALA-YNGN----------------LTALDLRSGQIMWKRELG--------SVNDFIVDGNRI 280 (376)
T ss_dssp ----CCCCCCEEETTEEEEEC-TTSC----------------EEEEETTTCCEEEEECCC--------CEEEEEEETTEE
T ss_pred ccccccCCCcEEECCEEEEEe-cCcE----------------EEEEECCCCcEEeeccCC--------CCCCceEECCEE
Confidence 11 1233345577777754 3322 788998655 5765311 123456668888
Q ss_pred EEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
|+.... ..|++||+.+.+
T Consensus 281 ~~~~~~---------------g~l~~~d~~tG~ 298 (376)
T 3q7m_A 281 YLVDQN---------------DRVMALTIDGGV 298 (376)
T ss_dssp EEEETT---------------CCEEEEETTTCC
T ss_pred EEEcCC---------------CeEEEEECCCCc
Confidence 886532 349999988764
No 23
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.64 E-value=0.012 Score=58.94 Aligned_cols=191 Identities=17% Similarity=0.160 Sum_probs=120.4
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCC
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN 148 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~ 148 (685)
-+-+.+.+. ++.||+-+|.+ |. +.|.++|+.+++-..-.. .|..-++.+++..++.||+....
T Consensus 21 ~ftqGL~~~---~~~LyestG~~--g~-----S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~----- 83 (243)
T 3mbr_X 21 AFTEGLFYL---RGHLYESTGET--GR-----SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR----- 83 (243)
T ss_dssp CCEEEEEEE---TTEEEEEECCT--TS-----CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS-----
T ss_pred cccccEEEE---CCEEEEECCCC--CC-----ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee-----
Confidence 344577777 68999999952 21 478999999997664332 23455678888889999998653
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE-EeccC
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPR 227 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~ 227 (685)
-+.+++||+.|.+-..- .|.+..|.+++.-++.||+.-| .+.|+.+|+.+.+-. .+...
T Consensus 84 ------~~~v~v~D~~tl~~~~t----i~~~~~Gwglt~dg~~L~vSdg----------s~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 84 ------NHEGFVYDLATLTPRAR----FRYPGEGWALTSDDSHLYMSDG----------TAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp ------SSEEEEEETTTTEEEEE----EECSSCCCEEEECSSCEEEECS----------SSEEEEECTTTCCEEEEEECE
T ss_pred ------CCEEEEEECCcCcEEEE----EeCCCCceEEeeCCCEEEEECC----------CCeEEEEeCCCCeEEEEEEEc
Confidence 36799999988764332 1223467777777888999755 367999999997643 23322
Q ss_pred CCCCCCCCccc-eeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC-CCC--------CCc
Q 005655 228 FGSMWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MPP--------GPR 297 (685)
Q Consensus 228 ~~~~~P~~Rs~-~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g-~~P--------~~R 297 (685)
.. +.+... -.+...++.||+--.. .+++.+.||.+.+-...-..+ ..| ..-
T Consensus 144 ~~---g~~~~~lNeLe~~~G~lyanvw~----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~ 204 (243)
T 3mbr_X 144 AG---GRPLDNLNELEWVNGELLANVWL----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTND 204 (243)
T ss_dssp ET---TEECCCEEEEEEETTEEEEEETT----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSS
T ss_pred cC---CcccccceeeEEeCCEEEEEECC----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCC
Confidence 11 222211 2334458888854322 246889999887544432221 111 112
Q ss_pred ceeEEEEE--CCeEEEecce
Q 005655 298 AGFSMCVH--KKRALLFGGV 315 (685)
Q Consensus 298 ~g~s~~~~--~~~iyvfGG~ 315 (685)
.--++++. ++++||.|-.
T Consensus 205 vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 205 VLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEECCC
Confidence 33456665 6889998865
No 24
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.51 E-value=0.033 Score=57.82 Aligned_cols=207 Identities=13% Similarity=0.077 Sum_probs=119.4
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEE-ECCEEEEEcCccC
Q 005655 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVS-WKNYLYIFGGEFT 145 (685)
Q Consensus 68 ~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~-~~~~iyvfGG~~~ 145 (685)
....+.+++. +++|||.... .+.+.++|+.+.+-. .++.. ..-+.+++ -+++|||....
T Consensus 43 g~~~~~i~~~---~~~lyv~~~~---------~~~v~viD~~t~~~~~~i~~~-----~~p~~i~~~~~g~lyv~~~~-- 103 (328)
T 3dsm_A 43 GDVAQSMVIR---DGIGWIVVNN---------SHVIFAIDINTFKEVGRITGF-----TSPRYIHFLSDEKAYVTQIW-- 103 (328)
T ss_dssp BSCEEEEEEE---TTEEEEEEGG---------GTEEEEEETTTCCEEEEEECC-----SSEEEEEEEETTEEEEEEBS--
T ss_pred CccceEEEEE---CCEEEEEEcC---------CCEEEEEECcccEEEEEcCCC-----CCCcEEEEeCCCeEEEEECC--
Confidence 3444566666 7889988751 257899999988763 45322 12234444 57899998742
Q ss_pred CCCCccccccCeEEEEECCCCcEEE-cccCCCC-CCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEE
Q 005655 146 SPNQERFHHYKDFWMLDLKTNQWEQ-LNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~~t~~W~~-~~~~g~P-~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (685)
-+.+.+||+.+++-.. ++..... ....-+.+++.+++||+..-- ..+.|.+||+.+.+...
T Consensus 104 ---------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~--------~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 104 ---------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS--------YQNRILKIDTETDKVVD 166 (328)
T ss_dssp ---------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT--------TCCEEEEEETTTTEEEE
T ss_pred ---------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC--------CCCEEEEEECCCCeEEE
Confidence 2579999999987543 3321100 001334555678899997420 13679999999987654
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEE
Q 005655 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (685)
Q Consensus 224 v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~ 302 (685)
.-.. + ..| +.++.. ++.+|+....... . .........++++|+.+.+....-.. |....-..+
T Consensus 167 ~i~~--g--~~p---~~i~~~~dG~l~v~~~~~~~--~----~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~l 230 (328)
T 3dsm_A 167 ELTI--G--IQP---TSLVMDKYNKMWTITDGGYE--G----SPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSEV 230 (328)
T ss_dssp EEEC--S--SCB---CCCEECTTSEEEEEBCCBCT--T----CSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEEE
T ss_pred EEEc--C--CCc---cceEEcCCCCEEEEECCCcc--C----CccccCCceEEEEECCCCeEEEEEec---CCCCCceeE
Confidence 3222 1 112 233333 6787776532211 0 00000135699999998876643321 222223455
Q ss_pred EEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 303 CVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 303 ~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
++. ++++|+..+ .|++||+.+.+.
T Consensus 231 a~~~d~~~lyv~~~-----------------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 231 QLNGTRDTLYWINN-----------------DIWRMPVEADRV 256 (328)
T ss_dssp EECTTSCEEEEESS-----------------SEEEEETTCSSC
T ss_pred EEecCCCEEEEEcc-----------------EEEEEECCCCce
Confidence 555 567777543 489999987653
No 25
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.46 E-value=0.035 Score=56.42 Aligned_cols=202 Identities=12% Similarity=0.034 Sum_probs=120.1
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~ 150 (685)
-+.+.+.| ++.||+..|.+ + .+.|.++|+.+++-...... +....+++++..++.||+..-.
T Consensus 23 ~~Gl~~~~--dg~Lyvstg~~--~-----~s~v~~iD~~tg~v~~~i~l--~~~~fgeGi~~~g~~lyv~t~~------- 84 (266)
T 2iwa_A 23 TQGLVYAE--NDTLFESTGLY--G-----RSSVRQVALQTGKVENIHKM--DDSYFGEGLTLLNEKLYQVVWL------- 84 (266)
T ss_dssp EEEEEECS--TTEEEEEECST--T-----TCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEETT-------
T ss_pred cccEEEeC--CCeEEEECCCC--C-----CCEEEEEECCCCCEEEEEec--CCCcceEEEEEeCCEEEEEEec-------
Confidence 36788775 47999987742 1 14799999999876533221 2334566777889999998642
Q ss_pred cccccCeEEEEECCCCcEE-EcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE-EeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~ 228 (685)
-+.+++||+.|.+=. .++. + .-.+.+++.-++++|+.-| .+.|+.+|+.+++-. .+....
T Consensus 85 ----~~~v~viD~~t~~v~~~i~~---g-~~~g~glt~Dg~~l~vs~g----------s~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 85 ----KNIGFIYDRRTLSNIKNFTH---Q-MKDGWGLATDGKILYGSDG----------TSILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp ----CSEEEEEETTTTEEEEEEEC---C-SSSCCEEEECSSSEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred ----CCEEEEEECCCCcEEEEEEC---C-CCCeEEEEECCCEEEEECC----------CCeEEEEECCCCcEEEEEEECC
Confidence 267999999876532 2332 1 1234555555678998654 368999999987633 333221
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC-CC--------CCCCcce
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-GM--------PPGPRAG 299 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~-g~--------~P~~R~g 299 (685)
. ..|..+ -..+...++.||+--.. .+.+.+.|+.+.+-...-.. +. .|..-.-
T Consensus 147 ~-~~p~~~-~nele~~dg~lyvn~~~----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~ 208 (266)
T 2iwa_A 147 N-GHRVIR-LNELEYINGEVWANIWQ----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL 208 (266)
T ss_dssp T-TEECCC-EEEEEEETTEEEEEETT----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred C-Cccccc-ceeEEEECCEEEEecCC----------------CCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence 0 001111 12333447788765332 24699999988754333221 11 1111123
Q ss_pred eEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 300 ~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
.++++. ++++||.|+.. +.|+..++..
T Consensus 209 nGIa~~~~~~~lfVTgk~~--------------~~v~~i~l~~ 237 (266)
T 2iwa_A 209 NGIAWDQENKRIFVTGKLW--------------PKLFEIKLHL 237 (266)
T ss_dssp EEEEEETTTTEEEEEETTC--------------SEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEECCCC--------------CeEEEEEEec
Confidence 556665 56899998763 5577777543
No 26
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.46 E-value=0.029 Score=56.82 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=116.7
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~ 150 (685)
-..+.+. ++.||+-.|.+ + .+.|.++|+.+++-..-.. .|..-++.+++..++.||+....
T Consensus 45 tqGL~~~---~~~LyestG~~--g-----~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~------- 105 (262)
T 3nol_A 45 TEGFFYR---NGYFYESTGLN--G-----RSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK------- 105 (262)
T ss_dssp EEEEEEE---TTEEEEEEEET--T-----EEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS-------
T ss_pred cceEEEE---CCEEEEECCCC--C-----CceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee-------
Confidence 3566666 68999998852 2 2478899999987653322 23344667788889999999653
Q ss_pred cccccCeEEEEECCCCcEE-EcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE-EeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~ 228 (685)
-+.+++||+.|.+-. .++. +-.|.+++.-++.||+.-| .+.++.+|+.+.+-. .+....
T Consensus 106 ----~~~v~v~D~~t~~~~~ti~~-----~~eG~glt~dg~~L~~SdG----------s~~i~~iDp~T~~v~~~I~V~~ 166 (262)
T 3nol_A 106 ----NGLGFVWNIRNLRQVRSFNY-----DGEGWGLTHNDQYLIMSDG----------TPVLRFLDPESLTPVRTITVTA 166 (262)
T ss_dssp ----SSEEEEEETTTCCEEEEEEC-----SSCCCCEEECSSCEEECCS----------SSEEEEECTTTCSEEEEEECEE
T ss_pred ----CCEEEEEECccCcEEEEEEC-----CCCceEEecCCCEEEEECC----------CCeEEEEcCCCCeEEEEEEecc
Confidence 267999999887643 3332 3366777777778888755 357999999987643 333221
Q ss_pred CCCCCCCccce-eEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC-CC-------CCCcce
Q 005655 229 GSMWPSPRSGF-QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MP-------PGPRAG 299 (685)
Q Consensus 229 ~~~~P~~Rs~~-s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g-~~-------P~~R~g 299 (685)
. +.+.... .+...++.||+---. .+.+.+.||.+.+-...-... .. |..-.-
T Consensus 167 ~---g~~~~~lNELe~~~G~lyan~w~----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl 227 (262)
T 3nol_A 167 H---GEELPELNELEWVDGEIFANVWQ----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL 227 (262)
T ss_dssp T---TEECCCEEEEEEETTEEEEEETT----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred C---CccccccceeEEECCEEEEEEcc----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence 0 1111111 234448888864322 346899999987654443321 11 111233
Q ss_pred eEEEEE--CCeEEEecce
Q 005655 300 FSMCVH--KKRALLFGGV 315 (685)
Q Consensus 300 ~s~~~~--~~~iyvfGG~ 315 (685)
.++|+. .+++||.|-.
T Consensus 228 NGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 228 NGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 556665 5789988865
No 27
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.31 E-value=0.017 Score=58.60 Aligned_cols=185 Identities=15% Similarity=0.095 Sum_probs=113.9
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~ 150 (685)
...+.+. ++.||+-.|. ++.|.+||+.+++-..-. .|..-++.+++..++.||+....
T Consensus 57 tqGL~~~---~~~Ly~stG~---------~g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~------- 114 (268)
T 3nok_A 57 TQGLVFH---QGHFFESTGH---------QGTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT------- 114 (268)
T ss_dssp EEEEEEE---TTEEEEEETT---------TTEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS-------
T ss_pred cceEEEE---CCEEEEEcCC---------CCEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc-------
Confidence 3566666 7899999984 234889999988654322 23344667788889999998653
Q ss_pred cccccCeEEEEECCCCcEE-EcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEE-eccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~ 228 (685)
-+.+++||+.|.+-. .++. +-.|.+++.-++.||+.-| .+.++.+|+.+.+-.. +....
T Consensus 115 ----~~~v~V~D~~Tl~~~~ti~~-----~~eGwGLt~Dg~~L~vSdG----------s~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 115 ----EGLLFTWSGMPPQRERTTRY-----SGEGWGLCYWNGKLVRSDG----------GTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp ----SCEEEEEETTTTEEEEEEEC-----SSCCCCEEEETTEEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred ----CCEEEEEECCcCcEEEEEeC-----CCceeEEecCCCEEEEECC----------CCEEEEEcCCCCeEEEEEEeCC
Confidence 267999999887644 3332 3346777777889999865 3689999999876433 32221
Q ss_pred CCCCCCCccc-eeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC---------CCCCCcc
Q 005655 229 GSMWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---------MPPGPRA 298 (685)
Q Consensus 229 ~~~~P~~Rs~-~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g---------~~P~~R~ 298 (685)
. +.+... -.+...++.||+---. .+.+.+.||.+.+-...-..+ ..+..-.
T Consensus 176 ~---g~~v~~lNeLe~~dG~lyanvw~----------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v 236 (268)
T 3nok_A 176 R---GQPVELINELECANGVIYANIWH----------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV 236 (268)
T ss_dssp T---TEECCCEEEEEEETTEEEEEETT----------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC
T ss_pred C---CcccccccccEEeCCEEEEEECC----------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc
Confidence 0 112111 1233447887753211 346899999887544332221 1111122
Q ss_pred eeEEEEE--CCeEEEecce
Q 005655 299 GFSMCVH--KKRALLFGGV 315 (685)
Q Consensus 299 g~s~~~~--~~~iyvfGG~ 315 (685)
--++|+. ++++||.|-.
T Consensus 237 lNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 237 LNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEEECTTTCCEEEEETT
T ss_pred eEEEEEcCCCCEEEEeCCC
Confidence 3455555 5789988854
No 28
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.28 E-value=0.0077 Score=61.00 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=103.2
Q ss_pred eEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceee
Q 005655 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207 (685)
Q Consensus 128 ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~ 207 (685)
..+...++.||+..|.... +.+.++|+.|++=..--+ ++..-.+.+++..+++||+....
T Consensus 46 qGL~~~~~~LyestG~~g~---------S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~--------- 105 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGR---------SSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK--------- 105 (262)
T ss_dssp EEEEEETTEEEEEEEETTE---------EEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS---------
T ss_pred ceEEEECCEEEEECCCCCC---------ceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee---------
Confidence 4455558999999986432 578899999997654433 45555678889999999998653
Q ss_pred eceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
.+.+++||+.+.+-..- . +.+-.|.+++..++.||+.-| + +.++++||.+.+-...
T Consensus 106 ~~~v~v~D~~t~~~~~t--i-----~~~~eG~glt~dg~~L~~SdG-s----------------~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRS--F-----NYDGEGWGLTHNDQYLIMSDG-T----------------PVLRFLDPESLTPVRT 161 (262)
T ss_dssp SSEEEEEETTTCCEEEE--E-----ECSSCCCCEEECSSCEEECCS-S----------------SEEEEECTTTCSEEEE
T ss_pred CCEEEEEECccCcEEEE--E-----ECCCCceEEecCCCEEEEECC-C----------------CeEEEEcCCCCeEEEE
Confidence 46899999988764322 2 222356667766778888765 2 2489999998765443
Q ss_pred ecCCCCCCCcce-eEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 288 KKIGMPPGPRAG-FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 288 ~~~g~~P~~R~g-~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
-..+..+.+... --+.+.+++||+-- ...+.|.+.|+.+.+=.
T Consensus 162 I~V~~~g~~~~~lNELe~~~G~lyan~--------------w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWVDGEIFANV--------------WQTNKIVRIDPETGKVT 205 (262)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEEE--------------TTSSEEEEECTTTCBEE
T ss_pred EEeccCCccccccceeEEECCEEEEEE--------------ccCCeEEEEECCCCcEE
Confidence 222111111111 12455688877421 12578999999988643
No 29
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.20 E-value=0.024 Score=57.67 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=100.8
Q ss_pred eeEEEEEC-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCce
Q 005655 127 AHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205 (685)
Q Consensus 127 ~ha~v~~~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~ 205 (685)
-|.+++.+ +.||+..|... -+.+.++|+.|++=..--+ ++....+++++..++.||+..-.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~---------~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~------- 84 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYG---------RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL------- 84 (266)
T ss_dssp EEEEEECSTTEEEEEECSTT---------TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT-------
T ss_pred cccEEEeCCCeEEEECCCCC---------CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec-------
Confidence 36666665 89999877422 2679999999998654333 34445667788889999998542
Q ss_pred eeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeE
Q 005655 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (685)
Q Consensus 206 ~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (685)
.+.+++||+.+.+= +...+.+ . -.+.+++..++.+|+.-| + +.++++|+.+.+-.
T Consensus 85 --~~~v~viD~~t~~v--~~~i~~g-~---~~g~glt~Dg~~l~vs~g-s----------------~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 85 --KNIGFIYDRRTLSN--IKNFTHQ-M---KDGWGLATDGKILYGSDG-T----------------SILYEIDPHTFKLI 139 (266)
T ss_dssp --CSEEEEEETTTTEE--EEEEECC-S---SSCCEEEECSSSEEEECS-S----------------SEEEEECTTTCCEE
T ss_pred --CCEEEEEECCCCcE--EEEEECC-C---CCeEEEEECCCEEEEECC-C----------------CeEEEEECCCCcEE
Confidence 46899999987643 3223111 1 234555555778888754 2 34899999887654
Q ss_pred EeecCCCCCCCc-ceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 286 KVKKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 286 ~~~~~g~~P~~R-~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
..-..+..+.+. .-..+.+.++++|+--. ..+.|.+.|+.+++=
T Consensus 140 ~~I~Vg~~~~p~~~~nele~~dg~lyvn~~--------------~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNELEYINGEVWANIW--------------QTDCIARISAKDGTL 184 (266)
T ss_dssp EEEECEETTEECCCEEEEEEETTEEEEEET--------------TSSEEEEEETTTCCE
T ss_pred EEEEECCCCcccccceeEEEECCEEEEecC--------------CCCeEEEEECCCCcE
Confidence 443322211111 12244455888775422 147899999998753
No 30
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.13 E-value=0.011 Score=62.13 Aligned_cols=185 Identities=12% Similarity=0.032 Sum_probs=104.1
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~ 159 (685)
..||+.|+. -+.|++||+.+++........ ..-++++.. +..||+.|+.. +.+.
T Consensus 2 ~~l~vs~~~---------d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d-----------~~i~ 57 (391)
T 1l0q_A 2 TFAYIANSE---------SDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHS-----------NDVS 57 (391)
T ss_dssp EEEEEEETT---------TTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGG-----------TEEE
T ss_pred CEEEEEcCC---------CCEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCCC-----------CeEE
Confidence 467777762 146899999988655332211 112333333 34677777542 4688
Q ss_pred EEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcc
Q 005655 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (685)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs 237 (685)
+||+.+++....-. .+. .-++++.. +++||+.|.. ...|++||+.+.+....-.. .. .
T Consensus 58 v~d~~~~~~~~~~~--~~~--~v~~~~~spdg~~l~~~~~~---------~~~v~v~d~~~~~~~~~~~~-----~~--~ 117 (391)
T 1l0q_A 58 IIDTATNNVIATVP--AGS--SPQGVAVSPDGKQVYVTNMA---------SSTLSVIDTTSNTVAGTVKT-----GK--S 117 (391)
T ss_dssp EEETTTTEEEEEEE--CSS--SEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC-----SS--S
T ss_pred EEECCCCeEEEEEE--CCC--CccceEECCCCCEEEEEECC---------CCEEEEEECCCCeEEEEEeC-----CC--C
Confidence 99998887654433 121 22233332 3456665442 25699999998765544332 11 1
Q ss_pred ceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C-CeEEEec
Q 005655 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K-KRALLFG 313 (685)
Q Consensus 238 ~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~-~~iyvfG 313 (685)
-.+++.. +..||+.++..+. +++||+.+.+.......+. .-.++++. + ..+|+.+
T Consensus 118 ~~~~~~s~dg~~l~~~~~~~~~----------------v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 118 PLGLALSPDGKKLYVTNNGDKT----------------VSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTE----------------EEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCE----------------EEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEe
Confidence 2333333 4567777765443 8899998877665543221 12344444 3 3565655
Q ss_pred ceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
+.. +.|++||+.+.....
T Consensus 177 ~~~--------------~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 177 FDS--------------MSISVIDTVTNSVID 194 (391)
T ss_dssp TTT--------------TEEEEEETTTTEEEE
T ss_pred CCC--------------CEEEEEECCCCeEEE
Confidence 432 459999998876543
No 31
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=97.11 E-value=0.023 Score=56.10 Aligned_cols=215 Identities=10% Similarity=0.042 Sum_probs=111.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCC-CcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK-QEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~-~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~ 148 (685)
-.++...| ++.++++++. ..+++||+.+ .....+.... ....-.+++.. ++..+++++....
T Consensus 44 v~~~~~sp--dg~~l~~~~~----------~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~-- 107 (297)
T 2ojh_A 44 FEAPNWSP--DGKYLLLNSE----------GLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEF-- 107 (297)
T ss_dssp CEEEEECT--TSSEEEEEET----------TEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTT--
T ss_pred eEeeEECC--CCCEEEEEcC----------CeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCC--
Confidence 34556666 5666666641 3689999998 8777665332 11222222333 4555555553221
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
....+|.+++.+.....+... . . .+ .+.+ ++ +|++.++... ...+|.+++.+.....+.
T Consensus 108 -----~~~~l~~~~~~~~~~~~~~~~--~-~--~~-~~~~spdg~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 108 -----GKSAIYLLPSTGGTPRLMTKN--L-P--SY-WHGWSPDGKSFTYCGIRDQ-------VFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp -----SSCEEEEEETTCCCCEECCSS--S-S--EE-EEEECTTSSEEEEEEEETT-------EEEEEEEETTTCCEEECC
T ss_pred -----CcceEEEEECCCCceEEeecC--C-C--cc-ceEECCCCCEEEEEECCCC-------ceEEEEEECCCCcceEcc
Confidence 136799999988876665441 1 1 22 2233 34 4554454321 246888888877766554
Q ss_pred cCCCCCCCCCccceeEEEe-CCE-EEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEE
Q 005655 226 PRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (685)
Q Consensus 226 ~~~~~~~P~~Rs~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~ 303 (685)
.. +... .++... ++. |++.+.... ...+|.+++.......+... .....+++
T Consensus 170 ~~-----~~~~--~~~~~s~dg~~l~~~~~~~~--------------~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~ 223 (297)
T 2ojh_A 170 HG-----EGRN--DGPDYSPDGRWIYFNSSRTG--------------QMQIWRVRVDGSSVERITDS-----AYGDWFPH 223 (297)
T ss_dssp CS-----SSCE--EEEEECTTSSEEEEEECTTS--------------SCEEEEEETTSSCEEECCCC-----SEEEEEEE
T ss_pred cC-----CCcc--ccceECCCCCEEEEEecCCC--------------CccEEEECCCCCCcEEEecC-----CcccCCeE
Confidence 33 1111 222222 444 444443332 23588888777666655321 11122233
Q ss_pred EE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 304 ~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+. +++.+++++....... ........|++||+.+.....+..
T Consensus 224 ~s~dg~~l~~~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFD---HPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp ECTTSSEEEEEEEETTCCS---CCSSEEEEEEEEETTSCSCEEEEE
T ss_pred ECCCCCEEEEEEcCCCCCc---ccccCceEEEEEecCCCCceeeec
Confidence 32 5666666655421100 000012569999999887765543
No 32
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=97.06 E-value=0.032 Score=60.08 Aligned_cols=207 Identities=11% Similarity=0.009 Sum_probs=114.9
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CC-EEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KN-YLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~-~iyvfGG~~~s~~~~ 150 (685)
++...| ++..+++++. ++. ...++++|+.+++...+.... ....+++.. ++ .|++.+....
T Consensus 183 ~~~~Sp--dg~~la~~s~--~~~----~~~i~~~d~~tg~~~~l~~~~----~~~~~~~~spdg~~la~~~~~~g----- 245 (415)
T 2hqs_A 183 SPAWSP--DGSKLAYVTF--ESG----RSALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG----- 245 (415)
T ss_dssp EEEECT--TSSEEEEEEC--TTS----SCEEEEEETTTCCEEEEECCS----SCEEEEEECTTSSEEEEEECTTS-----
T ss_pred eeEEcC--CCCEEEEEEe--cCC----CcEEEEEECCCCcEEEeecCC----CcccCEEEcCCCCEEEEEEecCC-----
Confidence 344555 4555555552 111 147899999999887765432 122233333 34 4554444321
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
...+|++|+.++....+.. .+ .....+.+ ++..+++++..+. ...||++|+.+..-..+...
T Consensus 246 ----~~~i~~~d~~~~~~~~l~~--~~---~~~~~~~~spdg~~l~~~s~~~g------~~~i~~~d~~~~~~~~l~~~- 309 (415)
T 2hqs_A 246 ----SLNLYVMDLASGQIRQVTD--GR---SNNTEPTWFPDSQNLAFTSDQAG------RPQVYKVNINGGAPQRITWE- 309 (415)
T ss_dssp ----SCEEEEEETTTCCEEECCC--CS---SCEEEEEECTTSSEEEEEECTTS------SCEEEEEETTSSCCEECCCS-
T ss_pred ----CceEEEEECCCCCEEeCcC--CC---CcccceEECCCCCEEEEEECCCC------CcEEEEEECCCCCEEEEecC-
Confidence 2579999999988776654 11 12223344 4555555543211 24799999988765554332
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
.....+++.. ++..+++++.... ...++++|+.+.....+... . ...++++. +
T Consensus 310 ------~~~~~~~~~spdG~~l~~~~~~~g-------------~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~spd 364 (415)
T 2hqs_A 310 ------GSQNQDADVSSDGKFMVMVSSNGG-------------QQHIAKQDLATGGVQVLSST-----F-LDETPSLAPN 364 (415)
T ss_dssp ------SSEEEEEEECTTSSEEEEEEECSS-------------CEEEEEEETTTCCEEECCCS-----S-SCEEEEECTT
T ss_pred ------CCcccCeEECCCCCEEEEEECcCC-------------ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcCC
Confidence 1122223333 5555555543211 24589999998887655431 1 22333333 6
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
++.+++++.... ...||++|+.+.....+..
T Consensus 365 g~~l~~~s~~~~-----------~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 365 GTMVIYSSSQGM-----------GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp SSEEEEEEEETT-----------EEEEEEEETTSCCEEECCC
T ss_pred CCEEEEEEcCCC-----------ccEEEEEECCCCcEEEeeC
Confidence 777777775431 2369999998877776654
No 33
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.04 E-value=0.04 Score=57.76 Aligned_cols=195 Identities=13% Similarity=0.043 Sum_probs=106.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
.++.+.|. +..||+.|+. -+.+++||+.+++........ ..-++++.. +..||+.|..
T Consensus 35 ~~~~~s~d-g~~l~~~~~~---------d~~i~v~d~~~~~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~------ 94 (391)
T 1l0q_A 35 MGAVISPD-GTKVYVANAH---------SNDVSIIDTATNNVIATVPAG----SSPQGVAVSPDGKQVYVTNMA------ 94 (391)
T ss_dssp EEEEECTT-SSEEEEEEGG---------GTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETT------
T ss_pred ceEEECCC-CCEEEEECCC---------CCeEEEEECCCCeEEEEEECC----CCccceEECCCCCEEEEEECC------
Confidence 45666662 3456676652 146899999888765432221 122333333 3456666542
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
-+.+++||+.++....... . ...-++++.. ++.||+.++. .+.|++||+.+.+....-..
T Consensus 95 -----~~~v~v~d~~~~~~~~~~~--~--~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 95 -----SSTLSVIDTTSNTVAGTVK--T--GKSPLGLALSPDGKKLYVTNNG---------DKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp -----TTEEEEEETTTTEEEEEEE--C--SSSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC
T ss_pred -----CCEEEEEECCCCeEEEEEe--C--CCCcceEEECCCCCEEEEEeCC---------CCEEEEEECCCCcEEEEEec
Confidence 1469999999887654433 1 1122333333 3467776653 25789999988776554332
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
.. .-..++.. +..||+.++..+. +++||+.+......... ...-.++++.
T Consensus 157 -----~~--~~~~~~~~~dg~~l~~~~~~~~~----------------v~~~d~~~~~~~~~~~~-----~~~~~~~~~~ 208 (391)
T 1l0q_A 157 -----GR--SPKGIAVTPDGTKVYVANFDSMS----------------ISVIDTVTNSVIDTVKV-----EAAPSGIAVN 208 (391)
T ss_dssp -----CS--SEEEEEECTTSSEEEEEETTTTE----------------EEEEETTTTEEEEEEEC-----SSEEEEEEEC
T ss_pred -----CC--CcceEEECCCCCEEEEEeCCCCE----------------EEEEECCCCeEEEEEec-----CCCccceEEC
Confidence 11 11233333 4567777665433 88899988765544321 1122233333
Q ss_pred -CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
+++.+++++... .-+.|++||+.+..-
T Consensus 209 ~~g~~l~~~~~~~-----------~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 209 PEGTKAYVTNVDK-----------YFNTVSMIDTGTNKI 236 (391)
T ss_dssp TTSSEEEEEEECS-----------SCCEEEEEETTTTEE
T ss_pred CCCCEEEEEecCc-----------CCCcEEEEECCCCeE
Confidence 454444444311 135699999987653
No 34
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.00 E-value=0.13 Score=51.16 Aligned_cols=199 Identities=7% Similarity=-0.043 Sum_probs=107.6
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~ 149 (685)
-+++++.+ ++.|||.... .+.+++||+. .....+..+. ....-+++++. ++.||+....
T Consensus 22 p~~i~~d~--~g~l~v~~~~---------~~~v~~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 81 (300)
T 2qc5_A 22 PYGITSSE--DGKVWFTQHK---------ANKISSLDQS-GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENG------ 81 (300)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSCEEEEETT------
T ss_pred cceeeECC--CCCEEEEcCC---------CCeEEEECCC-CceEEEECCC--CCCcceeEEECCCCCEEEEecC------
Confidence 35566655 5788886531 1468899988 7776654321 11223344443 4778886531
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
.+.+++||+. +.+..+... .....-+++++. ++.||+.... .+.|++||+. .+...+....
T Consensus 82 -----~~~v~~~d~~-g~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~-g~~~~~~~~~ 143 (300)
T 2qc5_A 82 -----ANKIGKLSKK-GGFTEYPLP--QPDSGPYGITEGLNGDIWFTQLN---------GDRIGKLTAD-GTIYEYDLPN 143 (300)
T ss_dssp -----TTEEEEECTT-SCEEEEECS--STTCCEEEEEECSTTCEEEEETT---------TTEEEEECTT-SCEEEEECSS
T ss_pred -----CCeEEEECCC-CCeEEecCC--CCCCCCccceECCCCCEEEEccC---------CCeEEEECCC-CCEEEccCCC
Confidence 2468899988 777655431 112222344443 5778876432 2468889887 6655443221
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
....-++++.. ++.||+...... .+++|++ +.++..+.... ....-.++++. +
T Consensus 144 -----~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~ 198 (300)
T 2qc5_A 144 -----KGSYPAFITLGSDNALWFTENQNN----------------SIGRITN-TGKLEEYPLPT---NAAAPVGITSGND 198 (300)
T ss_dssp -----TTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECTT
T ss_pred -----CCCCceeEEECCCCCEEEEecCCC----------------eEEEECC-CCcEEEeeCCC---CCCCcceEEECCC
Confidence 11122334443 566777653222 3788988 56666543211 11122344443 5
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
+.||+.... .+.|++||+ +..+..+.
T Consensus 199 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 199 GALWFVEIM--------------GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp SSEEEEETT--------------TTEEEEECT-TCCEEEEE
T ss_pred CCEEEEccC--------------CCEEEEEcC-CCcEEEEE
Confidence 677775421 234888888 56666554
No 35
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.94 E-value=0.079 Score=53.72 Aligned_cols=196 Identities=12% Similarity=0.044 Sum_probs=98.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.+++.|+. + ..+.+||+.+..-...-... ...-.+++.. ++.+++.|+..
T Consensus 70 ~~~~~~--~~~~l~s~~~--d-------~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d------- 128 (312)
T 4ery_A 70 DVAWSS--DSNLLVSASD--D-------KTLKIWDVSSGKCLKTLKGH---SNYVFCCNFNPQSNLIVSGSFD------- 128 (312)
T ss_dssp EEEECT--TSSEEEEEET--T-------SEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEECC--C-------CEEEEEECCCCcEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCC-------
Confidence 344454 4566666662 1 35788888877543221111 1111222222 35666777653
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
..+.+||+.+..-...-. .....-..+.+ ++.+++.|+.+ ..+.+||+.+.+....-...
T Consensus 129 ----~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~~~~~~~~~~~- 190 (312)
T 4ery_A 129 ----ESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYD---------GLCRIWDTASGQCLKTLIDD- 190 (312)
T ss_dssp ----SCEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEEEEECCS-
T ss_pred ----CcEEEEECCCCEEEEEec----CCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeeEEecc-
Confidence 347889998775432211 11111223333 55677777753 35888998876543322110
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEE-EECC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC-VHKK 307 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~-~~~~ 307 (685)
..+. -..++.. ++..++.|+..+. +.+||+.+..-...-.. .......-.... ..++
T Consensus 191 ---~~~~-~~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 191 ---DNPP-VSFVKFSPNGKYILAATLDNT----------------LKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGG 249 (312)
T ss_dssp ---SCCC-EEEEEECTTSSEEEEEETTTE----------------EEEEETTTTEEEEEECS-SCCSSSCCCEEEECSSS
T ss_pred ---CCCc-eEEEEECCCCCEEEEEcCCCe----------------EEEEECCCCcEEEEEEe-cCCceEEEEEEEEeCCC
Confidence 1111 1112222 5666677766544 77888877654332221 111111111222 2356
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.+++.|+.. +.|.+||+.+..
T Consensus 250 ~~l~sg~~d--------------g~i~vwd~~~~~ 270 (312)
T 4ery_A 250 KWIVSGSED--------------NLVYIWNLQTKE 270 (312)
T ss_dssp CEEEECCTT--------------SCEEEEETTTCC
T ss_pred cEEEEECCC--------------CEEEEEECCCch
Confidence 677777753 348999988764
No 36
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.90 E-value=0.46 Score=48.38 Aligned_cols=210 Identities=14% Similarity=0.080 Sum_probs=107.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
+.+++.|. ++.||+...... .....+.+++||+.+.+....... ....+.+++. ++.+|+.++.
T Consensus 44 ~~~~~s~d-g~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~------ 109 (353)
T 3vgz_A 44 YEMAYSQQ-ENALWLATSQSR---KLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTV------ 109 (353)
T ss_dssp EEEEEETT-TTEEEEEECCCT---TTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETT------
T ss_pred cceEECCC-CCEEEEEcCCCc---CCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecC------
Confidence 45666663 467777664211 111235799999988865432211 1112334443 3568887653
Q ss_pred ccccccCeEEEEECCCCcEEE-cccCCCCC-----CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQ-LNLKGCPS-----PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~-~~~~g~P~-----~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
-+.+++||+.+++-.. +....... +..-+.+++. +++||+.+... ...|++||+.+.+-
T Consensus 110 -----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 110 -----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--------ESVIWVVDGGNIKL 176 (353)
T ss_dssp -----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--------SCEEEEEETTTTEE
T ss_pred -----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC--------CceEEEEcCCCCce
Confidence 2469999999887433 22211111 1112333333 45677765321 24699999987654
Q ss_pred EEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcce
Q 005655 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (685)
Q Consensus 222 ~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g 299 (685)
...-.. ....-++++.. +..||+... . ..+++||+.+.+-......+........
T Consensus 177 ~~~~~~------~~~~~~~~~~s~dg~~l~~~~~-~----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 177 KTAIQN------TGKMSTGLALDSEGKRLYTTNA-D----------------GELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEECC------CCTTCCCCEEETTTTEEEEECT-T----------------SEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEecC------CCCccceEEECCCCCEEEEEcC-C----------------CeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 433221 11111223333 556666543 2 2377899887754443332211112222
Q ss_pred eEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 300 ~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
.++++. ++.+|+.+.. .+.|++||+.+.+...
T Consensus 234 ~~~~~s~dg~~l~~~~~~--------------~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 234 INISLDTARQRAFITDSK--------------AAEVLVVDTRNGNILA 267 (353)
T ss_dssp EEEEEETTTTEEEEEESS--------------SSEEEEEETTTCCEEE
T ss_pred ceEEECCCCCEEEEEeCC--------------CCEEEEEECCCCcEEE
Confidence 344554 4456655422 2569999998876543
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.90 E-value=0.052 Score=54.94 Aligned_cols=195 Identities=13% Similarity=0.051 Sum_probs=102.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.++++|+. + +.+.+||+.+.....+...... ...-.+++.. ++.+++.|+..
T Consensus 101 ~~~~~~~--~~~~l~~~~~--d-------~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d------ 162 (337)
T 1gxr_A 101 RSCKLLP--DGCTLIVGGE--A-------STLSIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCSD------ 162 (337)
T ss_dssp EEEEECT--TSSEEEEEES--S-------SEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEEEcC--CCCEEEEEcC--C-------CcEEEEECCCCCcceeeecccC-CCceEEEEECCCCCEEEEEeCC------
Confidence 3445555 4666666662 1 3688999988875433221111 1111223333 45566666642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
..+.+||+.+......-. .. ......+.+ ++.+++.|+.. ..+.+||+.+..-......
T Consensus 163 -----g~v~~~d~~~~~~~~~~~--~~--~~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~- 223 (337)
T 1gxr_A 163 -----GNIAVWDLHNQTLVRQFQ--GH--TDGASCIDISNDGTKLWTGGLD---------NTVRSWDLREGRQLQQHDF- 223 (337)
T ss_dssp -----SCEEEEETTTTEEEEEEC--CC--SSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEEC-
T ss_pred -----CcEEEEeCCCCceeeeee--cc--cCceEEEEECCCCCEEEEEecC---------CcEEEEECCCCceEeeecC-
Confidence 358899998876543322 11 112222333 55666676642 4688999887654333222
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
+.+ -.+++.. ++.++++|+..+. +.+||+.+..-..+.. ....-.++++. +
T Consensus 224 ----~~~--v~~~~~s~~~~~l~~~~~~~~----------------i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 224 ----TSQ--IFSLGYCPTGEWLAVGMESSN----------------VEVLHVNKPDKYQLHL-----HESCVLSLKFAYC 276 (337)
T ss_dssp ----SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTSSCEEEECC-----CSSCEEEEEECTT
T ss_pred ----CCc--eEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCCeEEEcC-----CccceeEEEECCC
Confidence 111 2233333 5667777776544 7788887665333321 11122333443 5
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
+++++.|+.. +.|.+||+.+..-.
T Consensus 277 ~~~l~~~~~d--------------g~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 277 GKWFVSTGKD--------------NLLNAWRTPYGASI 300 (337)
T ss_dssp SSEEEEEETT--------------SEEEEEETTTCCEE
T ss_pred CCEEEEecCC--------------CcEEEEECCCCeEE
Confidence 6677777643 35899998876543
No 38
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.87 E-value=0.12 Score=51.56 Aligned_cols=191 Identities=9% Similarity=0.024 Sum_probs=100.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
+++++.| ++.||+.... .+.+++||+ ++....+..+. ....-++++.. ++.||+....
T Consensus 102 ~~i~~~~--~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------- 160 (299)
T 2z2n_A 102 YGITEGP--NGDIWFTEMN---------GNRIGRITD-DGKIREYELPN--KGSYPSFITLGSDNALWFTENQ------- 160 (299)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECT-TCCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-------
T ss_pred eeeEECC--CCCEEEEecC---------CceEEEECC-CCCEEEecCCC--CCCCCceEEEcCCCCEEEEeCC-------
Confidence 4555554 5677775431 135888998 66666553321 11223444444 4688886421
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCcc-ceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG-HRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsg-h~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
.+.+++||+ ++....+.. +..-.. +++++. ++.||+.... .+.|++||+ +..+..+....
T Consensus 161 ----~~~i~~~~~-~g~~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 222 (299)
T 2z2n_A 161 ----NNAIGRITE-SGDITEFKI---PTPASGPVGITKGNDDALWFVEII---------GNKIGRITT-SGEITEFKIPT 222 (299)
T ss_dssp ----TTEEEEECT-TCCEEEEEC---SSTTCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred ----CCEEEEEcC-CCcEEEeeC---CCCCCcceeEEECCCCCEEEEccC---------CceEEEECC-CCcEEEEECCC
Confidence 256899999 777776532 111112 233333 4678876431 256899999 77776653321
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECC
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~ 307 (685)
+ ...-++++.. ++.||+...... .+++||+ +.....+..... ...-.++++.++
T Consensus 223 ----~-~~~~~~i~~~~~g~l~v~~~~~~----------------~i~~~d~-~g~~~~~~~~~~---~~~~~~i~~~~g 277 (299)
T 2z2n_A 223 ----P-NARPHAITAGAGIDLWFTEWGAN----------------KIGRLTS-NNIIEEYPIQIK---SAEPHGICFDGE 277 (299)
T ss_dssp ----T-TCCEEEEEECSTTCEEEEETTTT----------------EEEEEET-TTEEEEEECSSS---SCCEEEEEECSS
T ss_pred ----C-CCCceeEEECCCCCEEEeccCCc----------------eEEEECC-CCceEEEeCCCC---CCccceEEecCC
Confidence 1 1112233333 567777643222 3788888 445444432111 112234444566
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
.||+... .+.|++|++.+.
T Consensus 278 ~l~v~~~---------------~~~l~~~~~~~~ 296 (299)
T 2z2n_A 278 TIWFAME---------------CDKIGKLTLIKD 296 (299)
T ss_dssp CEEEEET---------------TTEEEEEEEC--
T ss_pred CEEEEec---------------CCcEEEEEcCcc
Confidence 7776543 134888887664
No 39
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.038 Score=57.08 Aligned_cols=113 Identities=7% Similarity=0.082 Sum_probs=64.2
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C--CEEEEEcCccCCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K--NYLYIFGGEFTSPNQ 149 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~--~~iyvfGG~~~s~~~ 149 (685)
++...| ++.+++.|+. + +.+.+||+....+..+..... ....-.+++.. + +.+++.|+..
T Consensus 16 ~~~~s~--~~~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d----- 78 (379)
T 3jrp_A 16 DAVLDY--YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYD----- 78 (379)
T ss_dssp EEEECS--SSSEEEEEET--T-------SCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred EEEEcC--CCCEEEEEEC--C-------CcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccC-----
Confidence 344555 5667777762 2 357888888777765543221 11111223322 2 5677777753
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--C--CEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
..+.+||+.++.|..+.. .........++.+ . +.+++.|+.+ ..|.+||+.+.
T Consensus 79 ------g~v~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~ 135 (379)
T 3jrp_A 79 ------GKVLIWKEENGRWSQIAV--HAVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKEN 135 (379)
T ss_dssp ------SCEEEEEEETTEEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCTT
T ss_pred ------CEEEEEEcCCCceeEeee--ecCCCcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCCC
Confidence 347888998998876655 2222222333444 2 5677777753 46788888765
No 40
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.84 E-value=0.27 Score=50.16 Aligned_cols=184 Identities=11% Similarity=0.076 Sum_probs=95.6
Q ss_pred ccEEEEEcCCCcEE-EecCCCCCC-----CcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcc
Q 005655 101 GDLYRYDVEKQEWK-VISSPNSPP-----PRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172 (685)
Q Consensus 101 ndv~~yd~~~~~W~-~l~s~~~P~-----~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~ 172 (685)
+.+++||+.+.+-. .+....... +..-+++++. ++.+|+.+... -..+++||+.+..-...-
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----------ESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----------SCEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----------CceEEEEcCCCCceEEEe
Confidence 46899999887643 333221111 1112344443 46688776321 146999999887644332
Q ss_pred cCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEE
Q 005655 173 LKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEV 248 (685)
Q Consensus 173 ~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~I 248 (685)
. . ....-+.++.. +++||+... .+.+++||+.+.+-........ . .......+++.. ++.|
T Consensus 181 ~--~-~~~~~~~~~~s~dg~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 181 Q--N-TGKMSTGLALDSEGKRLYTTNA----------DGELITIDTADNKILSRKKLLD-D-GKEHFFINISLDTARQRA 245 (353)
T ss_dssp C--C-CCTTCCCCEEETTTTEEEEECT----------TSEEEEEETTTTEEEEEEECCC-S-SSCCCEEEEEEETTTTEE
T ss_pred c--C-CCCccceEEECCCCCEEEEEcC----------CCeEEEEECCCCeEEEEEEcCC-C-CCCcccceEEECCCCCEE
Confidence 2 0 11112233333 456666543 2468899998876443222210 0 011112223333 5567
Q ss_pred EEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccCCccccc
Q 005655 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIM 326 (685)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~ 326 (685)
|+.+... +.+++||+.+.+.......+ .+ .++++. ++.+|+.+..
T Consensus 246 ~~~~~~~----------------~~v~~~d~~~~~~~~~~~~~---~~---~~~~~s~dg~~l~v~~~~----------- 292 (353)
T 3vgz_A 246 FITDSKA----------------AEVLVVDTRNGNILAKVAAP---ES---LAVLFNPARNEAYVTHRQ----------- 292 (353)
T ss_dssp EEEESSS----------------SEEEEEETTTCCEEEEEECS---SC---CCEEEETTTTEEEEEETT-----------
T ss_pred EEEeCCC----------------CEEEEEECCCCcEEEEEEcC---CC---ceEEECCCCCEEEEEECC-----------
Confidence 7665332 24889999887665544332 22 234444 3457765532
Q ss_pred cccCCcEEEEECCCCcEEE
Q 005655 327 SLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 327 ~~~~ndl~~yd~~t~~W~~ 345 (685)
-+.|++||+.+.+...
T Consensus 293 ---~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 293 ---AGKVSVIDAKSYKVVK 308 (353)
T ss_dssp ---TTEEEEEETTTTEEEE
T ss_pred ---CCeEEEEECCCCeEEE
Confidence 2469999998876543
No 41
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.84 E-value=0.23 Score=49.36 Aligned_cols=198 Identities=6% Similarity=-0.030 Sum_probs=108.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
+++++.+ ++.||+.... .+.+++||+. ..+..+..+. ....-++++.. ++.||+....
T Consensus 18 ~~i~~d~--~g~l~v~~~~---------~~~v~~~d~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------- 76 (299)
T 2z2n_A 18 YGITVSD--KGKVWITQHK---------ANMISCINLD-GKITEYPLPT--PDAKVMCLTISSDGEVWFTENA------- 76 (299)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECTT-CCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-------
T ss_pred cceEECC--CCCEEEEecC---------CCcEEEEcCC-CCeEEecCCc--ccCceeeEEECCCCCEEEeCCC-------
Confidence 4556665 5778875431 1368899998 7777665321 11223344443 5778887532
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCC-CCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P-~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
...+++||+. +.+..+.. | ....-+++++. ++.||+.... ...+++||+ +.....+....
T Consensus 77 ----~~~i~~~~~~-g~~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~~ 138 (299)
T 2z2n_A 77 ----ANKIGRITKK-GIIKEYTL---PNPDSAPYGITEGPNGDIWFTEMN---------GNRIGRITD-DGKIREYELPN 138 (299)
T ss_dssp ----TTEEEEECTT-SCEEEEEC---SSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred ----CCeEEEECCC-CcEEEEeC---CCcCCCceeeEECCCCCEEEEecC---------CceEEEECC-CCCEEEecCCC
Confidence 1458889886 55655442 2 12222344443 5788886432 246888998 66665554321
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
....-++++.. ++.||+...... .+++||+ +.+...+.... ....-.++++. +
T Consensus 139 -----~~~~~~~i~~~~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 139 -----KGSYPSFITLGSDNALWFTENQNN----------------AIGRITE-SGDITEFKIPT---PASGPVGITKGND 193 (299)
T ss_dssp -----TTCCEEEEEECTTSCEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECTT
T ss_pred -----CCCCCceEEEcCCCCEEEEeCCCC----------------EEEEEcC-CCcEEEeeCCC---CCCcceeEEECCC
Confidence 11222344444 667887643222 3788998 66666543211 11122344444 5
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+.+|+.... .+.|++||+ +..+..+..
T Consensus 194 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 220 (299)
T 2z2n_A 194 DALWFVEII--------------GNKIGRITT-SGEITEFKI 220 (299)
T ss_dssp SSEEEEETT--------------TTEEEEECT-TCCEEEEEC
T ss_pred CCEEEEccC--------------CceEEEECC-CCcEEEEEC
Confidence 677775422 245889998 777665543
No 42
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.78 E-value=0.094 Score=54.03 Aligned_cols=149 Identities=12% Similarity=0.114 Sum_probs=77.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.++++|+. + +.+++||+.+..|..+..... ....-.+++.. ++.+++.|+..
T Consensus 12 ~~~~~s~--~~~~l~~~~~--d-------~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d------ 73 (372)
T 1k8k_C 12 SCHAWNK--DRTQIAICPN--N-------HEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD------ 73 (372)
T ss_dssp CEEEECT--TSSEEEEECS--S-------SEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT------
T ss_pred EEEEECC--CCCEEEEEeC--C-------CEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCC------
Confidence 3455566 5778888873 1 468899999987664433211 11122233333 46666777642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc-eEEeccC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPR 227 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~ 227 (685)
..+.+||+.+..+..... ..........+.+ ++.+++.|+.. ..+.+||+.+.. |..+...
T Consensus 74 -----g~i~vwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~ 137 (372)
T 1k8k_C 74 -----RNAYVWTLKGRTWKPTLV--ILRINRAARCVRWAPNEKKFAVGSGS---------RVISICYFEQENDWWVCKHI 137 (372)
T ss_dssp -----SCEEEEEEETTEEEEEEE--CCCCSSCEEEEEECTTSSEEEEEETT---------SSEEEEEEETTTTEEEEEEE
T ss_pred -----CeEEEEECCCCeeeeeEE--eecCCCceeEEEECCCCCEEEEEeCC---------CEEEEEEecCCCcceeeeee
Confidence 347788888888765543 1111222223333 45677777643 345666665443 3332222
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
.. +....-.++... ++.+++.|+..+.
T Consensus 138 ~~---~~~~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 138 KK---PIRSTVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp CT---TCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ec---ccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence 10 111112233333 6667777877654
No 43
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.73 E-value=0.44 Score=47.41 Aligned_cols=206 Identities=10% Similarity=0.053 Sum_probs=108.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCC--CcceeEEEEE--CCEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP--PRSAHQAVSW--KNYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~--~R~~ha~v~~--~~~iyvfGG~~~s~ 147 (685)
+++++.+ ++.|||.+.. .+.|++||+.......+....... ...-+.+++. ++.|||.+...
T Consensus 33 ~~v~~~~--~g~l~v~~~~---------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~--- 98 (286)
T 1q7f_A 33 SGVAVNA--QNDIIVADTN---------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP--- 98 (286)
T ss_dssp EEEEECT--TCCEEEEEGG---------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG---
T ss_pred ceEEECC--CCCEEEEECC---------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC---
Confidence 4455554 5678887541 136889998865544443311111 1123444443 58899886421
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
.+.+.+||.....-..+.. +....-+.+++. ++.||+.... .+.|++||+.......+..
T Consensus 99 -------~~~i~~~d~~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~~ 159 (286)
T 1q7f_A 99 -------THQIQIYNQYGQFVRKFGA---TILQHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGNVLHKFGC 159 (286)
T ss_dssp -------GCEEEEECTTSCEEEEECT---TTCSCEEEEEECTTSCEEEEETT---------TTEEEEECTTSCEEEEEEC
T ss_pred -------CCEEEEECCCCcEEEEecC---ccCCCceEEEEeCCCCEEEEECC---------CCEEEEEcCCCCEEEEeCC
Confidence 2468889965444333332 111122333333 5678886542 2468889976654444432
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
. . ....-.++++. ++.||+.+.... .+++||+.......+...+.. ..-.++++-
T Consensus 160 ~--~---~~~~p~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~g~~~~~~~~~g~~---~~p~~i~~d 215 (286)
T 1q7f_A 160 S--K---HLEFPNGVVVNDKQEIFISDNRAH----------------CVKVFNYEGQYLRQIGGEGIT---NYPIGVGIN 215 (286)
T ss_dssp T--T---TCSSEEEEEECSSSEEEEEEGGGT----------------EEEEEETTCCEEEEESCTTTS---CSEEEEEEC
T ss_pred C--C---ccCCcEEEEECCCCCEEEEECCCC----------------EEEEEcCCCCEEEEEccCCcc---CCCcEEEEC
Confidence 2 0 11111233333 678888765433 378899876554444322211 122344443
Q ss_pred -CCeEEEecceecccCCccccccccCC-cEEEEECCCCcEEEEEe
Q 005655 306 -KKRALLFGGVVDMEMKGDVIMSLFLN-ELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~n-dl~~yd~~t~~W~~l~~ 348 (685)
++++||..... + .|.+||+....-..+..
T Consensus 216 ~~G~l~v~~~~~--------------~~~i~~~~~~g~~~~~~~~ 246 (286)
T 1q7f_A 216 SNGEILIADNHN--------------NFNLTIFTQDGQLISALES 246 (286)
T ss_dssp TTCCEEEEECSS--------------SCEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCC--------------CEEEEEECCCCCEEEEEcc
Confidence 57888776431 2 58999976554444433
No 44
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.69 E-value=0.37 Score=48.77 Aligned_cols=210 Identities=10% Similarity=-0.017 Sum_probs=104.3
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCC
Q 005655 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTS 146 (685)
Q Consensus 68 ~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s 146 (685)
...+-+.+..|. ++.||++.-. .+.+++||+.++....+..+. + -.+++.. ++.|||..+
T Consensus 12 ~~~~Egp~w~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~~----~-~~~i~~~~dG~l~v~~~---- 72 (297)
T 3g4e_A 12 CRCGESPVWEEV-SNSLLFVDIP---------AKKVCRWDSFTKQVQRVTMDA----P-VSSVALRQSGGYVATIG---- 72 (297)
T ss_dssp CSBEEEEEEETT-TTEEEEEETT---------TTEEEEEETTTCCEEEEECSS----C-EEEEEEBTTSSEEEEET----
T ss_pred CccccCCeEECC-CCEEEEEECC---------CCEEEEEECCCCcEEEEeCCC----c-eEEEEECCCCCEEEEEC----
Confidence 345556666653 3778887652 246899999988766554321 1 1233333 456666431
Q ss_pred CCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCC---ceeeeceEEEEEcCCCce
Q 005655 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLR---EVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~---~~~~~~dv~~yD~~t~~W 221 (685)
+.+++||+.++.++.+.......+......+.+ ++.||+- ....... .......||+|++.. ..
T Consensus 73 ---------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~-~~~~~~~~~~~~~~~~~l~~~d~~g-~~ 141 (297)
T 3g4e_A 73 ---------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAG-TMAEETAPAVLERHQGALYSLFPDH-HV 141 (297)
T ss_dssp ---------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEE-EEECCSBTTBCCTTCEEEEEECTTS-CE
T ss_pred ---------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEe-cCCcccccccccCCCcEEEEEECCC-CE
Confidence 468999999999887754211112221222223 5677763 2211100 001134688888753 33
Q ss_pred EEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeC--CCceeEEeecCCCCCC-C
Q 005655 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP--RTWEWSKVKKIGMPPG-P 296 (685)
Q Consensus 222 ~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~--~t~~W~~~~~~g~~P~-~ 296 (685)
..+... ...-..++.. +..||+...... .+++|+. .+............+. .
T Consensus 142 ~~~~~~-------~~~pngi~~spdg~~lyv~~~~~~----------------~i~~~~~d~~~G~~~~~~~~~~~~~~~ 198 (297)
T 3g4e_A 142 KKYFDQ-------VDISNGLDWSLDHKIFYYIDSLSY----------------SVDAFDYDLQTGQISNRRSVYKLEKEE 198 (297)
T ss_dssp EEEEEE-------ESBEEEEEECTTSCEEEEEEGGGT----------------EEEEEEECTTTCCEEEEEEEEECCGGG
T ss_pred EEEeec-------cccccceEEcCCCCEEEEecCCCC----------------cEEEEeccCCCCcccCcEEEEECCCCC
Confidence 332211 0111233333 446887765433 3677764 4444322111000011 1
Q ss_pred cceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 297 RAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 297 R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
..-.++++- +++|||.... -+.|++||+.+.+..
T Consensus 199 ~~p~g~~~d~~G~lwva~~~--------------~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 199 QIPDGMCIDAEGKLWVACYN--------------GGRVIRLDPVTGKRL 233 (297)
T ss_dssp CEEEEEEEBTTSCEEEEEET--------------TTEEEEECTTTCCEE
T ss_pred CCCCeeEECCCCCEEEEEcC--------------CCEEEEEcCCCceEE
Confidence 112344443 5777776421 134899998866543
No 45
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.64 E-value=0.042 Score=55.65 Aligned_cols=155 Identities=7% Similarity=0.004 Sum_probs=100.6
Q ss_pred eEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceee
Q 005655 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207 (685)
Q Consensus 128 ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~ 207 (685)
.++...++.||+..|.. ..+.++|+.|++=..-- ++..-.+.+++..+++||+....
T Consensus 58 qGL~~~~~~Ly~stG~~-----------g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~--------- 114 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQ-----------GTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT--------- 114 (268)
T ss_dssp EEEEEETTEEEEEETTT-----------TEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS---------
T ss_pred ceEEEECCEEEEEcCCC-----------CEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc---------
Confidence 45566689999999853 34889999988643221 23345677788899999998553
Q ss_pred eceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
.+.+++||+.+.+-..- . +.+-.|.+++..++.||+.-| + +.++++||.+.+-...
T Consensus 115 ~~~v~V~D~~Tl~~~~t--i-----~~~~eGwGLt~Dg~~L~vSdG-s----------------~~l~~iDp~T~~v~~~ 170 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERT--T-----RYSGEGWGLCYWNGKLVRSDG-G----------------TMLTFHEPDGFALVGA 170 (268)
T ss_dssp SCEEEEEETTTTEEEEE--E-----ECSSCCCCEEEETTEEEEECS-S----------------SEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCcCcEEEE--E-----eCCCceeEEecCCCEEEEECC-C----------------CEEEEEcCCCCeEEEE
Confidence 46899999988764322 2 222346677777889999865 3 2489999998765544
Q ss_pred ecCCCCCCCc-ceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 288 KKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 288 ~~~g~~P~~R-~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
-..+..|.+. .---+.+.+++||+- +. ..+.|.+.|+.+.+=
T Consensus 171 I~V~~~g~~v~~lNeLe~~dG~lyan--vw------------~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 171 VQVKLRGQPVELINELECANGVIYAN--IW------------HSSDVLEIDPATGTV 213 (268)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEE--ET------------TCSEEEEECTTTCBE
T ss_pred EEeCCCCcccccccccEEeCCEEEEE--EC------------CCCeEEEEeCCCCcE
Confidence 3222112111 112345558887742 11 257899999998854
No 46
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.52 E-value=0.18 Score=53.36 Aligned_cols=189 Identities=14% Similarity=0.032 Sum_probs=100.3
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~ 179 (685)
.+|.+|+.+..+..+.... .....++++.. ++.+|+.++.. ..+.+||+.++........+ ....
T Consensus 102 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~-----------~~i~~~d~~~g~~~~~~~~~~~~~~ 168 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRLAIPLLED-----------EGMDVLDINSGQTVRLSPPEKYKKK 168 (433)
T ss_dssp CEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEEEEEBTTS-----------SSEEEEETTTCCEEEECCCHHHHTT
T ss_pred EEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeEEEEeCCC-----------CeEEEEECCCCeEeeecCccccccc
Confidence 7888888777666543321 11112233333 57788777642 34899999988876543310 0111
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEeccc
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYS 255 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~ 255 (685)
......+.+ ++.+|+.|+.. ..+.+||+.+.+....-.. . ...-.+++.. +..+|+.++..
T Consensus 169 ~~~v~~~~~~~~~~~~~s~~~d---------~~v~~~d~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 169 LGFVETISIPEHNELWVSQMQA---------NAVHVFDLKTLAYKATVDL-----T-GKWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp CCEEEEEEEGGGTEEEEEEGGG---------TEEEEEETTTCCEEEEEEC-----S-SSSEEEEEEETTTTEEEEEETTT
T ss_pred CCceeEEEEcCCCEEEEEECCC---------CEEEEEECCCceEEEEEcC-----C-CCCeeEEEEcCCCCEEEEEecCC
Confidence 112222334 67888877742 4688999987654332221 0 1111223333 55677776554
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEE
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
+. +++||+.+........ ....-.++++. +++.+++++....... .--..|+
T Consensus 234 ~~----------------i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~------~~dg~i~ 286 (433)
T 3bws_A 234 ED----------------ISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQE------SGGGRLG 286 (433)
T ss_dssp TE----------------EEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTC------SCCEEEE
T ss_pred Cc----------------EEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccc------cCCCeEE
Confidence 33 8899998876654432 11222334443 5555555554321000 0124699
Q ss_pred EEECCCCcEEE
Q 005655 335 GFQLDNHRWYP 345 (685)
Q Consensus 335 ~yd~~t~~W~~ 345 (685)
+||+.+..-..
T Consensus 287 ~~d~~~~~~~~ 297 (433)
T 3bws_A 287 IYSMDKEKLID 297 (433)
T ss_dssp EEETTTTEEEE
T ss_pred EEECCCCcEEe
Confidence 99998875443
No 47
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.076 Score=54.72 Aligned_cols=202 Identities=10% Similarity=0.065 Sum_probs=102.7
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C--CEEEEEcCccCCCCCccccccCeE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K--NYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~--~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
+.+++.|+. + ..+.+||+.++.|..+..... ....-.+++.. . +.++++|+.. ..+
T Consensus 69 ~~~l~s~~~--d-------g~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d-----------~~i 127 (379)
T 3jrp_A 69 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSD-----------GKV 127 (379)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT-----------SEE
T ss_pred CCEEEEecc--C-------CEEEEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCCEEEEecCC-----------CcE
Confidence 567777763 2 358889999998875543321 11122223333 2 5677777642 357
Q ss_pred EEEECCCCcE-EEcccCCCCCCCccceEEEE--------------CCEEEEEccccCCCCceeeeceEEEEEcCCC--ce
Q 005655 159 WMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KW 221 (685)
Q Consensus 159 ~~yD~~t~~W-~~~~~~g~P~~Rsgh~~v~~--------------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W 221 (685)
.+||+.+... ......+.. ..-.+++.. ++.+++.|+.+ ..|.+||+.+. .|
T Consensus 128 ~v~d~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~ 196 (379)
T 3jrp_A 128 SVVEFKENGTTSPIIIDAHA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQTY 196 (379)
T ss_dssp EEEECCTTSCCCEEEEECCT--TCEEEEEECCCC----------CTTCEEEEEETT---------SCEEEEEEETTTTEE
T ss_pred EEEecCCCCceeeEEecCCC--CceEEEEEcCccccccccccCCCCCCEEEEEeCC---------CeEEEEEecCCCcce
Confidence 7888876632 111110011 111122222 36777777753 35777777544 35
Q ss_pred EEeccCCCCCCCCCccceeEEEe-C---CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCCC
Q 005655 222 QEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPG 295 (685)
Q Consensus 222 ~~v~~~~~~~~P~~Rs~~s~~~~-~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P~ 295 (685)
..+..... ....-.+++.. + +.+++.|+..+. +.+||+.+. .+...... ....
T Consensus 197 ~~~~~~~~----h~~~v~~~~~sp~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~~-~~~~ 255 (379)
T 3jrp_A 197 VLESTLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EEKF 255 (379)
T ss_dssp EEEEEECC----CSSCEEEEEECCCCSSSEEEEEEETTSC----------------EEEEEESSTTSCCEEEESS-SSCC
T ss_pred eeEEEEec----ccCcEeEEEECCCCCCCCeEEEEeCCCE----------------EEEEeCCCCCccceeeeec-cccC
Confidence 54443311 11111223333 4 788888887765 556665543 22222211 1111
Q ss_pred CcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECC-CCcEEEEEecC
Q 005655 296 PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELRK 350 (685)
Q Consensus 296 ~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~~ 350 (685)
...-.++++. ++.++++|+.. ..|.+|++. ...|..+....
T Consensus 256 ~~~v~~~~~s~~g~~l~~~~~d--------------g~i~iw~~~~~~~~~~~~~~~ 298 (379)
T 3jrp_A 256 PDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAGEVH 298 (379)
T ss_dssp SSCEEEEEECSSSCCEEEEESS--------------SSEEEEEEEETTEEEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEecCC--------------CcEEEEeCCCCCcccccccee
Confidence 2222333443 66777777653 348888877 56888777643
No 48
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.45 E-value=0.19 Score=50.53 Aligned_cols=135 Identities=10% Similarity=0.118 Sum_probs=68.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCC-CCcceeEEEEE-C-CEEEEEcCccCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP-PPRSAHQAVSW-K-NYLYIFGGEFTSPN 148 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P-~~R~~ha~v~~-~-~~iyvfGG~~~s~~ 148 (685)
.++++.+ ++.||+..+.. +......+.|++||+.++++..+..+... ....-++++.. + +.|||.+..
T Consensus 21 ~~~~~~~--~g~l~~~~~~~--~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 21 EGPVFDK--NGDFYIVAPEV--EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp EEEEECT--TSCEEEEETTC--EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred cCceECC--CCCEEEEEecc--ccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 4555554 57888872100 00000224689999999988866531100 11122334433 4 788887641
Q ss_pred CccccccCeEEEEECCCCcEEEc-ccCCCCCC-CccceEEEE-CCEEEEEccccCC------CCceeeeceEEEEEcCCC
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP-RSGHRMVLY-KHKIIVFGGFYDT------LREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~-~~~g~P~~-Rsgh~~v~~-~~~lyv~GG~~~~------~~~~~~~~dv~~yD~~t~ 219 (685)
+.+++||+. +....+ .......+ ..-+.+++. ++.||+....... .........|++||+. .
T Consensus 92 -------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 92 -------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp -------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred -------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 358899998 777766 43111111 112233332 5678876432100 0000112578999886 5
Q ss_pred ceEEe
Q 005655 220 KWQEI 224 (685)
Q Consensus 220 ~W~~v 224 (685)
+...+
T Consensus 163 ~~~~~ 167 (314)
T 1pjx_A 163 QMIQV 167 (314)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 55544
No 49
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.45 E-value=0.081 Score=61.85 Aligned_cols=187 Identities=11% Similarity=0.004 Sum_probs=101.2
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
-|++|++.++.+..+..+.......-++++.. ++.||| |.. ...+++||+.++.++.+...+.+. .
T Consensus 384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~-----------~~Gl~~~~~~~~~~~~~~~~~~~~-~ 450 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY-----------LGNISYYNTRLKKFQIIELEKNEL-L 450 (781)
T ss_dssp CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EET-----------TEEEEEECSSSCEEEECCSTTTCC-C
T ss_pred cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec-----------cCCEEEEcCCCCcEEEeccCCCCC-C
Confidence 48889998877775532111111222333333 577887 321 145889999999998876421121 1
Q ss_pred ccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCC
Q 005655 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (685)
Q Consensus 181 sgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~ 258 (685)
.-.+++.. ++.||+- . ..-|++||+.+.+|..+........+.. .-.+++.. ++.|+| |.....
T Consensus 451 ~v~~i~~d~~g~lwig-t----------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWi-gt~~~G- 516 (781)
T 3v9f_A 451 DVRVFYEDKNKKIWIG-T----------HAGVFVIDLASKKVIHHYDTSNSQLLEN-FVRSIAQDSEGRFWI-GTFGGG- 516 (781)
T ss_dssp CEEEEEECTTSEEEEE-E----------TTEEEEEESSSSSCCEEECTTTSSCSCS-CEEEEEECTTCCEEE-EESSSC-
T ss_pred eEEEEEECCCCCEEEE-E----------CCceEEEeCCCCeEEecccCcccccccc-eeEEEEEcCCCCEEE-EEcCCC-
Confidence 11222222 4677763 2 1458999999999887764421111111 11223333 566665 333222
Q ss_pred CcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE-ECCeEEEecceecccCCccccccccCCcE-EEE
Q 005655 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSLFLNEL-YGF 336 (685)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~-~~~~iyvfGG~~~~~~~~~~~~~~~~ndl-~~y 336 (685)
+++||+.+.+|........+|.... .+++. .++.|+|... . -| ++|
T Consensus 517 ---------------l~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~---------------Glv~~~ 564 (781)
T 3v9f_A 517 ---------------VGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-E---------------GLVCFP 564 (781)
T ss_dssp ---------------EEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-T---------------EEEEES
T ss_pred ---------------EEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-C---------------CceEEE
Confidence 7889999999888764322332221 22222 2566766432 2 25 888
Q ss_pred ECCCCcEEEEE
Q 005655 337 QLDNHRWYPLE 347 (685)
Q Consensus 337 d~~t~~W~~l~ 347 (685)
|+.+.++..+.
T Consensus 565 d~~~~~~~~~~ 575 (781)
T 3v9f_A 565 SARNFDYQVFQ 575 (781)
T ss_dssp CTTTCCCEEEC
T ss_pred CCCCCcEEEcc
Confidence 88888776654
No 50
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.44 E-value=0.58 Score=46.34 Aligned_cols=198 Identities=8% Similarity=-0.017 Sum_probs=105.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
+++++.+ ++.|||.... .+.|++||+. +.+..+..+. ....-+++++. ++.||+....
T Consensus 65 ~~i~~~~--~g~l~v~~~~---------~~~v~~~d~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------- 123 (300)
T 2qc5_A 65 MCLIVSS--LGDIWFTENG---------ANKIGKLSKK-GGFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN------- 123 (300)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECSTTCEEEEETT-------
T ss_pred eeEEECC--CCCEEEEecC---------CCeEEEECCC-CCeEEecCCC--CCCCCccceECCCCCEEEEccC-------
Confidence 4455554 5677775431 1358899988 7776554321 11223444444 5788886532
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCC-CCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
-+.+++||+. +....+.. +. ...-+++++. ++.||+.... ...|++||+ +.++..+....
T Consensus 124 ----~~~i~~~~~~-g~~~~~~~---~~~~~~~~~i~~d~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 185 (300)
T 2qc5_A 124 ----GDRIGKLTAD-GTIYEYDL---PNKGSYPAFITLGSDNALWFTENQ---------NNSIGRITN-TGKLEEYPLPT 185 (300)
T ss_dssp ----TTEEEEECTT-SCEEEEEC---SSTTCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred ----CCeEEEECCC-CCEEEccC---CCCCCCceeEEECCCCCEEEEecC---------CCeEEEECC-CCcEEEeeCCC
Confidence 2468899987 66654432 21 1222333332 4678775421 246889998 66666654321
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~ 306 (685)
....-.+++.. ++.||+...... .+++|++ +..+....... ....-.++++. +
T Consensus 186 -----~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 186 -----NAAAPVGITSGNDGALWFVEIMGN----------------KIGRITT-TGEISEYDIPT---PNARPHAITAGKN 240 (300)
T ss_dssp -----TTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECSS---TTCCEEEEEECST
T ss_pred -----CCCCcceEEECCCCCEEEEccCCC----------------EEEEEcC-CCcEEEEECCC---CCCCceEEEECCC
Confidence 11112233333 567777643222 3788888 55555543211 11122344443 5
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
++||+.... .+.|++||+ +.....+..
T Consensus 241 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 241 SEIWFTEWG--------------ANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp TCEEEEETT--------------TTEEEEECT-TSCEEEEEC
T ss_pred CCEEEeccC--------------CCeEEEECC-CCcEEEEEC
Confidence 677776421 245889998 566665543
No 51
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.027 Score=65.83 Aligned_cols=106 Identities=9% Similarity=0.165 Sum_probs=62.4
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--C--CEEEEEcCccCCCCCccccccC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYK 156 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~--~~iyvfGG~~~s~~~~~~~~~~ 156 (685)
++.+++.||. + ..+.+||+.+.++..+..... ....-.++.+ + +.+++.||.. .
T Consensus 20 dg~~latg~~--d-------g~I~vwd~~~~~~~~~~~l~~--h~~~V~~l~~s~~~~~~~l~s~s~D-----------g 77 (753)
T 3jro_A 20 YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLTG--HEGPVWRVDWAHPKFGTILASCSYD-----------G 77 (753)
T ss_dssp SSCCEEEEET--T-------TEEEEEEEETTEEEEEEEECC--CSSCEEEEEECCTTSCSEEEEEETT-----------S
T ss_pred CCCeEEEEEC--C-------CcEEEEecCCCCCccceeccC--CcCceEEEEecCCCCCCEEEEEeCC-----------C
Confidence 4667777762 2 357888888777776543321 1112222333 3 6677777753 3
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCccceEEEE--C--CEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.+.+||+.++.|..+.. .........++.+ + +.+++.||.+ ..|.+||+.+.
T Consensus 78 ~I~vwd~~~~~~~~~~~--~~~h~~~V~~v~~sp~~~~~~l~sgs~d---------g~I~vwdl~~~ 133 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAV--HAVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKEN 133 (753)
T ss_dssp CEEEEEEETTEEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCSS
T ss_pred eEEEEECCCCccccccc--ccCCCCCeEEEEECCCCCCCEEEEEeCC---------CcEEEEEeecC
Confidence 47888888888876655 2222222333344 3 6677888753 36788888765
No 52
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.41 E-value=0.091 Score=61.43 Aligned_cols=185 Identities=9% Similarity=0.098 Sum_probs=105.9
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC---C
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG---C 176 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g---~ 176 (685)
+-+++|++.+++++.+..... ....-.+++.. ++.|||-.. +.+++||+.++.|..+.... +
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKN-ELLDVRVFYEDKNKKIWIGTH-------------AGVFVIDLASKKVIHHYDTSNSQL 492 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTT-CCCCEEEEEECTTSEEEEEET-------------TEEEEEESSSSSCCEEECTTTSSC
T ss_pred CCEEEEcCCCCcEEEeccCCC-CCCeEEEEEECCCCCEEEEEC-------------CceEEEeCCCCeEEecccCccccc
Confidence 358899999999987754311 11222333333 477877421 45889999999987765421 1
Q ss_pred CCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecc
Q 005655 177 PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGY 254 (685)
Q Consensus 177 P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~ 254 (685)
+..+ -.+++.- ++.|+|- .. ..-|++||+.+.++..+... ..+|.... .+++.. ++.|+|-..
T Consensus 493 ~~~~-i~~i~~d~~g~lWig-t~---------~~Gl~~~~~~~~~~~~~~~~--~~l~~~~i-~~i~~d~~g~lWi~T~- 557 (781)
T 3v9f_A 493 LENF-VRSIAQDSEGRFWIG-TF---------GGGVGIYTPDMQLVRKFNQY--EGFCSNTI-NQIYRSSKGQMWLATG- 557 (781)
T ss_dssp SCSC-EEEEEECTTCCEEEE-ES---------SSCEEEECTTCCEEEEECTT--TTCSCSCE-EEEEECTTSCEEEEET-
T ss_pred ccce-eEEEEEcCCCCEEEE-Ec---------CCCEEEEeCCCCeEEEccCC--CCCCCCee-EEEEECCCCCEEEEEC-
Confidence 1111 1122222 5667763 21 13488999999988887653 11232211 222222 566766432
Q ss_pred cCCCCcccCCCCCCceeeeE-EEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCc
Q 005655 255 SKEVSTDKNQSEKGIIHSDL-WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv-~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (685)
. . + ++||+.+.++.......-+|.... .+++.- ++.|++.+ . +-
T Consensus 558 ~-G----------------lv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t-~---------------~G 603 (781)
T 3v9f_A 558 E-G----------------LVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWAST-N---------------TG 603 (781)
T ss_dssp T-E----------------EEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEEC-S---------------SC
T ss_pred C-C----------------ceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEc-C---------------Cc
Confidence 2 1 4 789998888887754323343332 344433 56777654 2 23
Q ss_pred EEEEECCCCcEEEEEe
Q 005655 333 LYGFQLDNHRWYPLEL 348 (685)
Q Consensus 333 l~~yd~~t~~W~~l~~ 348 (685)
|.+||+.+.++..+..
T Consensus 604 l~~~~~~~~~~~~~~~ 619 (781)
T 3v9f_A 604 ISCYITSKKCFYTYDH 619 (781)
T ss_dssp EEEEETTTTEEEEECG
T ss_pred eEEEECCCCceEEecc
Confidence 8899999888877654
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.40 E-value=0.16 Score=51.19 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=101.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcE----EEecCCCCCCCcceeEEEEE-CCEEEEEcCccCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTS 146 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W----~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s 146 (685)
.++...| ++.+++.|+ + +.+.+||+.+... ..+.... ....-.+++.. ++.++++|+..
T Consensus 55 ~~~~~~~--~~~~l~~~~---d-------g~i~iw~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-- 118 (337)
T 1gxr_A 55 CAVTISN--PTRHVYTGG---K-------GCVKVWDISHPGNKSPVSQLDCLN--RDNYIRSCKLLPDGCTLIVGGEA-- 118 (337)
T ss_dssp CEEEECS--SSSEEEEEC---B-------SEEEEEETTSTTCCSCSEEEECSC--TTSBEEEEEECTTSSEEEEEESS--
T ss_pred EEEEEec--CCcEEEEcC---C-------CeEEEEECCCCCceeeeecccccC--CCCcEEEEEEcCCCCEEEEEcCC--
Confidence 3455555 567777776 2 3578889876542 1221111 11112223333 45566666542
Q ss_pred CCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
..+.+||+.+........ ..........+.+ ++.+++.|+.. ..+.+||+.+.+....
T Consensus 119 ---------~~i~~~d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~~~~ 178 (337)
T 1gxr_A 119 ---------STLSIWDLAAPTPRIKAE--LTSSAPACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTLVRQ 178 (337)
T ss_dssp ---------SEEEEEECCCC--EEEEE--EECSSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEE
T ss_pred ---------CcEEEEECCCCCcceeee--cccCCCceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCceeee
Confidence 468899998887544332 1111112222333 55666677643 4588999987754433
Q ss_pred ccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEE
Q 005655 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~ 303 (685)
-.. . ...-.+++.. ++.+++.|+..+. +.+||+.+..-...... ...-.+++
T Consensus 179 ~~~-----~-~~~i~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~-----~~~v~~~~ 231 (337)
T 1gxr_A 179 FQG-----H-TDGASCIDISNDGTKLWTGGLDNT----------------VRSWDLREGRQLQQHDF-----TSQIFSLG 231 (337)
T ss_dssp ECC-----C-SSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTTEEEEEEEC-----SSCEEEEE
T ss_pred eec-----c-cCceEEEEECCCCCEEEEEecCCc----------------EEEEECCCCceEeeecC-----CCceEEEE
Confidence 221 1 1112223333 5667777776544 78888877654433221 11123344
Q ss_pred EE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 304 ~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
+. ++.++++|+.. +.|.+||+.+..-
T Consensus 232 ~s~~~~~l~~~~~~--------------~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 232 YCPTGEWLAVGMES--------------SNVEVLHVNKPDK 258 (337)
T ss_dssp ECTTSSEEEEEETT--------------SCEEEEETTSSCE
T ss_pred ECCCCCEEEEEcCC--------------CcEEEEECCCCCe
Confidence 43 56677777642 3489999887653
No 54
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.36 Score=51.88 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=78.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC--CCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~--~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
.++.+.|. +..|++.|+. + +.+.+||+. +.... .+.... .+..-.+++.. ++..+++|+.
T Consensus 106 ~~~~~s~d-~~~l~~~~~~--d-------g~v~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~---- 169 (450)
T 2vdu_B 106 RNLRLTSD-ESRLIACADS--D-------KSLLVFDVDKTSKNVLKLRKRFC--FSKRPNAISIAEDDTTVIIADK---- 169 (450)
T ss_dssp EEEEECTT-SSEEEEEEGG--G-------TEEEEEEECSSSSSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEET----
T ss_pred EEEEEcCC-CCEEEEEECC--C-------CeEEEEECcCCCCceeeeeeccc--CCCCceEEEEcCCCCEEEEEeC----
Confidence 44555552 3455677773 2 357788877 54333 222101 11111223332 4556666653
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--C---CEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K---HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~---~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
...++.|++.+..........+........++.+ + +.+++.|+.+ ..|.+||+.+....
T Consensus 170 -------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 170 -------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD---------EHIKISHYPQCFIV 233 (450)
T ss_dssp -------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT---------SCEEEEEESCTTCE
T ss_pred -------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC---------CcEEEEECCCCcee
Confidence 2458889887654321000001101111112222 5 6677777753 46888888776544
Q ss_pred EeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE
Q 005655 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 223 ~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (685)
..-.... ..+....++. ++.+++.|+..+. +.+||+.+.+...
T Consensus 234 ~~~~~~h---~~~v~~~~~s--d~~~l~s~~~d~~----------------v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 234 DKWLFGH---KHFVSSICCG--KDYLLLSAGGDDK----------------IFAWDWKTGKNLS 276 (450)
T ss_dssp EEECCCC---SSCEEEEEEC--STTEEEEEESSSE----------------EEEEETTTCCEEE
T ss_pred eeeecCC---CCceEEEEEC--CCCEEEEEeCCCe----------------EEEEECCCCcEee
Confidence 3311100 1111222222 6777778876544 7788877765433
No 55
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.39 E-value=0.31 Score=56.14 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=69.5
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCC---CCC---cceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~---P~~---R~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++.||+... .+.|+++|..+. .|+.-..... |.. ....+.++.++.||+...
T Consensus 77 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---------- 136 (677)
T 1kb0_A 77 DGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------- 136 (677)
T ss_dssp TTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----------
Confidence 678887665 247999999887 4885433210 000 112244556888888642
Q ss_pred cccCeEEEEECCCCc--EEEccc-CCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEecc
Q 005655 153 HHYKDFWMLDLKTNQ--WEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~-~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (685)
-..++.+|..|++ |+.-.. ..........+.++.++.||+-.+.... .....|+.||..+.+ |+.-..
T Consensus 137 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~----~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY----GVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEESS
T ss_pred --CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc----CCCCEEEEEECCCCcEEEEeccC
Confidence 1468999998875 876432 1001112222345668888775442211 124679999998765 876543
No 56
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.38 E-value=0.26 Score=49.78 Aligned_cols=193 Identities=11% Similarity=0.081 Sum_probs=101.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.+++.|+. + ..+.+|+..+......-... ...-.+++.. ++.+++.|+..
T Consensus 28 ~~~~s~--~~~~l~s~~~--d-------g~i~iw~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d------- 86 (312)
T 4ery_A 28 SVKFSP--NGEWLASSSA--D-------KLIKIWGAYDGKFEKTISGH---KLGISDVAWSSDSNLLVSASDD------- 86 (312)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEeeC--C-------CeEEEEeCCCcccchhhccC---CCceEEEEEcCCCCEEEEECCC-------
Confidence 445555 5667777762 2 25788898887776443221 1112223333 45677777643
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
..+.+||+.+..-...-. ..... -.++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 87 ----~~i~vwd~~~~~~~~~~~--~~~~~--v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~-- 147 (312)
T 4ery_A 87 ----KTLKIWDVSSGKCLKTLK--GHSNY--VFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTGKCLKTLPA-- 147 (312)
T ss_dssp ----SEEEEEETTTCCEEEEEE--CCSSC--EEEEEECSSSSEEEEEETT---------SCEEEEETTTCCEEEEECC--
T ss_pred ----CEEEEEECCCCcEEEEEc--CCCCC--EEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCEEEEEecC--
Confidence 358888988775432211 11111 122222 45667777753 3588899887653322111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~ 307 (685)
. ..+ -.++... ++.+++.|+..+. +.+||+.+.+........ ....-..+++. ++
T Consensus 148 ~--~~~--v~~~~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 204 (312)
T 4ery_A 148 H--SDP--VSAVHFNRDGSLIVSSSYDGL----------------CRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNG 204 (312)
T ss_dssp C--SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEEEECCS---SCCCEEEEEECTTS
T ss_pred C--CCc--EEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCceeeEEecc---CCCceEEEEECCCC
Confidence 0 111 1122222 6667788887665 778888776543322111 11111223333 56
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
..++.|+.. +.|.+||+.+..
T Consensus 205 ~~l~~~~~d--------------~~i~iwd~~~~~ 225 (312)
T 4ery_A 205 KYILAATLD--------------NTLKLWDYSKGK 225 (312)
T ss_dssp SEEEEEETT--------------TEEEEEETTTTE
T ss_pred CEEEEEcCC--------------CeEEEEECCCCc
Confidence 666666542 458999988764
No 57
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.37 E-value=0.25 Score=52.86 Aligned_cols=185 Identities=11% Similarity=0.146 Sum_probs=101.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
++.+++.|+. + +.+.+||..+.+-...-... .....++.+++.+++.|+.. ..+.+
T Consensus 142 d~~~l~~g~~--d-------g~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~l~sg~~d-----------g~i~v 197 (435)
T 1p22_A 142 DDQKIVSGLR--D-------NTIKIWDKNTLECKRILTGH----TGSVLCLQYDERVIITGSSD-----------STVRV 197 (435)
T ss_dssp CSSEEEEEES--S-------SCEEEEESSSCCEEEEECCC----SSCEEEEECCSSEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEeC--C-------CeEEEEeCCCCeEEEEEcCC----CCcEEEEEECCCEEEEEcCC-----------CeEEE
Confidence 5677777773 2 36889999887654332211 11223344477777888753 34888
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe-ccCCCCCCCCCccce
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI-KPRFGSMWPSPRSGF 239 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v-~~~~~~~~P~~Rs~~ 239 (685)
||+.++.....-. .....-.++.+.+.+++.|+.+ ..|.+||+.+..-..+ ... .......
T Consensus 198 wd~~~~~~~~~~~----~h~~~v~~l~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~-----~~~~~~v 259 (435)
T 1p22_A 198 WDVNTGEMLNTLI----HHCEAVLHLRFNNGMMVTCSKD---------RSIAVWDMASPTDITLRRVL-----VGHRAAV 259 (435)
T ss_dssp EESSSCCEEEEEC----CCCSCEEEEECCTTEEEEEETT---------SCEEEEECSSSSCCEEEEEE-----CCCSSCE
T ss_pred EECCCCcEEEEEc----CCCCcEEEEEEcCCEEEEeeCC---------CcEEEEeCCCCCCceeeeEe-----cCCCCcE
Confidence 9998876543221 1222233444566677777753 4678888876542211 111 1111122
Q ss_pred eEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceeccc
Q 005655 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDME 319 (685)
Q Consensus 240 s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~ 319 (685)
..+..++..++.|+.++. +.+||+.+..-...-.. ......++..++.+++.|+..
T Consensus 260 ~~~~~~~~~l~s~~~dg~----------------i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~g~~d--- 315 (435)
T 1p22_A 260 NVVDFDDKYIVSASGDRT----------------IKVWNTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSD--- 315 (435)
T ss_dssp EEEEEETTEEEEEETTSE----------------EEEEETTTCCEEEEEEC-----CSSCEEEEEEETTEEEEEETT---
T ss_pred EEEEeCCCEEEEEeCCCe----------------EEEEECCcCcEEEEEcC-----CCCcEEEEEeCCCEEEEEeCC---
Confidence 223336666777776654 77888876543332211 111223334466677777653
Q ss_pred CCccccccccCCcEEEEECCCCc
Q 005655 320 MKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 320 ~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+.|.+||+.+..
T Consensus 316 -----------g~i~iwd~~~~~ 327 (435)
T 1p22_A 316 -----------NTIRLWDIECGA 327 (435)
T ss_dssp -----------SCEEEEETTTCC
T ss_pred -----------CeEEEEECCCCC
Confidence 358999988754
No 58
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.35 E-value=0.24 Score=57.95 Aligned_cols=186 Identities=8% Similarity=0.048 Sum_probs=102.7
Q ss_pred cEEEEEcCCCcEEEecCCCCCCC-cceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~-R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
-|++||+.++++..+.......+ ..-.+++.. ++.|||-.. +.+++||+.++.|+.+.....+..
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~ 494 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------SALVRFNPEQRSFTTIEKEKDGTP 494 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------SCEEEEETTTTEEEECCBCTTCCB
T ss_pred ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------CceeEEeCCCCeEEEccccccccc
Confidence 58999999999887764321111 111222222 467776432 348899999999998764211111
Q ss_pred C--cc-ceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC-CCCCCCCCccceeEEEe-CCEEEEEec
Q 005655 180 R--SG-HRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR-FGSMWPSPRSGFQFFVY-QDEVFLYGG 253 (685)
Q Consensus 180 R--sg-h~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~-~~~~~P~~Rs~~s~~~~-~~~Iyv~GG 253 (685)
. .. .+++.- ++.||+-.. .-|++||+.+..+ .+... ....++.. .-.+++.. ++.|+|-.
T Consensus 495 ~~~~~i~~i~~d~~g~lWigt~-----------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT- 560 (795)
T 4a2l_A 495 VVSKQITTLFRDSHKRLWIGGE-----------EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGT- 560 (795)
T ss_dssp CCCCCEEEEEECTTCCEEEEES-----------SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEE-
T ss_pred cCCceEEEEEECCCCCEEEEeC-----------CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEe-
Confidence 1 11 122222 567777432 3488899988888 44321 00001111 11222222 56676643
Q ss_pred ccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCc
Q 005655 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (685)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (685)
.. . +++||+.+.++........+|.... .+++.- ++.|++.+. +-
T Consensus 561 ~~-G----------------l~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~----------------~G 606 (795)
T 4a2l_A 561 RE-G----------------FYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN----------------RG 606 (795)
T ss_dssp SS-C----------------EEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEET----------------TE
T ss_pred CC-C----------------ceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC----------------Cc
Confidence 22 2 7899999999888754322343322 333333 567776552 23
Q ss_pred EEEEECCCCcEEEEEe
Q 005655 333 LYGFQLDNHRWYPLEL 348 (685)
Q Consensus 333 l~~yd~~t~~W~~l~~ 348 (685)
|.+||+.+.++..+..
T Consensus 607 l~~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 607 ISCFNPETEKFRNFTE 622 (795)
T ss_dssp EEEEETTTTEEEEECG
T ss_pred eEEEcCCCCcEEEcCC
Confidence 8899999988876654
No 59
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.31 E-value=0.23 Score=52.66 Aligned_cols=204 Identities=10% Similarity=0.030 Sum_probs=106.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC-CCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
++++.| ++.+|+.|+. + +.+++||+.+.+........ .+........+.+ ++.+|+.|+..
T Consensus 127 ~~~~s~--~~~~~~~~~~--~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d----- 190 (433)
T 3bws_A 127 SVRFID--NTRLAIPLLE--D-------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA----- 190 (433)
T ss_dssp CCEESS--SSEEEEEBTT--S-------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----
T ss_pred EEEEeC--CCeEEEEeCC--C-------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----
Confidence 556666 5778877762 1 35899999988776543221 0011112222333 57888887742
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
..+.+||+.+......-. .. ...-.+++.. ++.||+.++. -..|.+||+.+.+....-..
T Consensus 191 ------~~v~~~d~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~ 252 (433)
T 3bws_A 191 ------NAVHVFDLKTLAYKATVD--LT-GKWSKILLYDPIRDLVYCSNWI---------SEDISVIDRKTKLEIRKTDK 252 (433)
T ss_dssp ------TEEEEEETTTCCEEEEEE--CS-SSSEEEEEEETTTTEEEEEETT---------TTEEEEEETTTTEEEEECCC
T ss_pred ------CEEEEEECCCceEEEEEc--CC-CCCeeEEEEcCCCCEEEEEecC---------CCcEEEEECCCCcEEEEecC
Confidence 468899998866443221 11 1111223333 4466666543 24689999988765433221
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-
Q 005655 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~- 305 (685)
...-.+++.. ++..+++++.... .. ......+++||+.+..-...... +..-.++++.
T Consensus 253 -------~~~~~~~~~~~~g~~l~~~~~~~~--~~------~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~ 312 (433)
T 3bws_A 253 -------IGLPRGLLLSKDGKELYIAQFSAS--NQ------ESGGGRLGIYSMDKEKLIDTIGP-----PGNKRHIVSGN 312 (433)
T ss_dssp -------CSEEEEEEECTTSSEEEEEEEESC--TT------CSCCEEEEEEETTTTEEEEEEEE-----EECEEEEEECS
T ss_pred -------CCCceEEEEcCCCCEEEEEECCCC--cc------ccCCCeEEEEECCCCcEEeeccC-----CCCcceEEECC
Confidence 1122333333 4445555554322 00 00124588999887754443211 1111233333
Q ss_pred CC-eEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 306 KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 306 ~~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
++ .+|+.++.. +.|.+||+.+.+-.
T Consensus 313 ~g~~l~~~~~~~--------------~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 313 TENKIYVSDMCC--------------SKIEVYDLKEKKVQ 338 (433)
T ss_dssp STTEEEEEETTT--------------TEEEEEETTTTEEE
T ss_pred CCCEEEEEecCC--------------CEEEEEECCCCcEE
Confidence 33 576665432 45999999876543
No 60
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.24 E-value=0.75 Score=53.65 Aligned_cols=184 Identities=14% Similarity=0.186 Sum_probs=101.3
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcc-eeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~-~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
-+++||+.+++...+..... .+.. -.+++.. ++.|||... +.+++||..++.+..+.. +.+..
T Consensus 108 Gl~~yd~~~~~f~~~~~~~~-~~~~~i~~i~~d~~g~lwi~t~-------------~gl~~~~~~~~~~~~~~~-~~~~~ 172 (795)
T 4a2l_A 108 GLSRYDEEKDIFQNFFYEKN-GKHLQVNGIEEISPEQLLISTP-------------EGLIMFDIKESKFIDDSF-STAMH 172 (795)
T ss_dssp CEEEEETTTTEEEEECCEET-TEECCCCEEEEEETTEEEEEET-------------TEEEEEETTTTEEECSSS-CHHHH
T ss_pred chheeCCCCCeEEecccccc-CCCceEEEEEECCCCCEEEEEC-------------CceEEEECCCCEEEeccC-CCCCC
Confidence 48899999998887654211 1111 1223333 678887532 458899999888876543 11111
Q ss_pred CccceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 180 Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
..-.+++. -++.|||. .. ...+++||+.+.++..+... +....-.+++.. ++.|+|.. ....
T Consensus 173 ~~i~~i~~d~~g~lwig-t~---------~~Gl~~~~~~~~~~~~~~~~-----~~~~~i~~i~~d~~g~lwigt-~~~G 236 (795)
T 4a2l_A 173 KTIASTLYRQGDQIYIG-TS---------TDGLYTYSITQKTFEKVIPI-----LGTKQIQAILQQSPTRIWVAT-EGAG 236 (795)
T ss_dssp TCCEEEEEEETTEEEEE-ES---------SSCEEEEETTTCCEEECC---------CCCEEEEEEEETTEEEEEE-BSSC
T ss_pred cceEEEEECCCCCEEEE-EC---------CCCEEEEeCCCCeEEEecCC-----CCCCeeEEEEEcCCCCEEEEE-CCCC
Confidence 10112222 37788883 21 13588999999988776432 111111223322 66777632 2222
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC---CcceeEEEEE-CCeEEEecceecccCCccccccccCCcE
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG---PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~---~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (685)
+++||+.+.++.........|. ...-.+++.- ++.|+| |.. +-|
T Consensus 237 ----------------l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~---------------~Gl 284 (795)
T 4a2l_A 237 ----------------LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTF---------------NDL 284 (795)
T ss_dssp ----------------EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EES---------------SCE
T ss_pred ----------------eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeC---------------Chh
Confidence 8899999988887754211111 1112233332 556665 322 238
Q ss_pred EEEECCCCcEEEEEe
Q 005655 334 YGFQLDNHRWYPLEL 348 (685)
Q Consensus 334 ~~yd~~t~~W~~l~~ 348 (685)
++||+.+..|..+..
T Consensus 285 ~~~~~~~~~~~~~~~ 299 (795)
T 4a2l_A 285 NIYHEGTDSFASYSS 299 (795)
T ss_dssp EEEETTTTEEEEECC
T ss_pred heEcCCCCeEEEEec
Confidence 999999998887654
No 61
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.22 E-value=0.014 Score=60.98 Aligned_cols=147 Identities=10% Similarity=0.105 Sum_probs=69.5
Q ss_pred EEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccc
Q 005655 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 74 ~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~ 152 (685)
+...| ++.+++.|+. + +.+.+||+.++.|..+..... ....-.+++.. ++.+++.|+..
T Consensus 17 ~~~s~--~g~~l~~~~~--d-------~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d-------- 76 (377)
T 3dwl_C 17 HAFNS--QRTEFVTTTA--T-------NQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIVTCSQD-------- 76 (377)
T ss_dssp CEECS--SSSEEECCCS--S-------SCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCEEEEETT--------
T ss_pred EEECC--CCCEEEEecC--C-------CEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEEEEEeCC--------
Confidence 44555 5677888873 2 357788888888877655431 11111222222 45677777643
Q ss_pred cccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc-eEEeccCC
Q 005655 153 HHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPRF 228 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~~ 228 (685)
..+.+||+.+.. |..+.. ..........+.+ ++.+++.|+.+ ..+.+||+.+.. |..+....
T Consensus 77 ---~~v~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~ 142 (377)
T 3dwl_C 77 ---RNAYVYEKRPDGTWKQTLV--LLRLNRAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQENDWWVSKHLK 142 (377)
T ss_dssp ---SSEEEC------CCCCEEE--CCCCSSCEEEEECCTTSSCCEEEESS---------SCEEECCC-----CCCCEEEC
T ss_pred ---CeEEEEEcCCCCceeeeeE--ecccCCceEEEEECCCCCEEEEEecC---------CeEEEEEECCcccceeeeEee
Confidence 347788888776 443332 1111122223333 45666777653 357777776654 32222221
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
. +....-.+++.. ++.+++.|+..+.
T Consensus 143 ~---~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 143 R---PLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp S---SCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred c---ccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 0 111122233333 5667788877654
No 62
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.22 E-value=0.3 Score=47.95 Aligned_cols=194 Identities=9% Similarity=0.039 Sum_probs=99.7
Q ss_pred cceEEEEeccCCCEEEE-EcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 70 SNCSLNINPLKETELIL-YGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~v-fGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
.-+++++.+ ++.||| .... .+.+++|++.+.....+.... ...-+++++. ++.|||... .
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~~---------~~~i~~~~~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~--~-- 86 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEGM---------YGRVVKLATGSTGTTVLPFNG---LYQPQGLAVDGAGTVYVTDF--N-- 86 (270)
T ss_dssp CEEEEEECT--TCCEEEEECSS---------SCEEEEECC-----EECCCCS---CCSCCCEEECTTCCEEEEET--T--
T ss_pred CccceEECC--CCCEEEEccCC---------CCcEEEecCCCcccceEeeCC---cCCcceeEECCCCCEEEEcC--C--
Confidence 345556655 567888 4331 246888888776655443221 1122344444 467888754 1
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
+.+++||+.+.....+...+ ...-+++++. ++.||+.... ...|++|+..+........
T Consensus 87 --------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 87 --------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG---------NNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp --------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG---------GTEEEEECTTCCSCEECCC
T ss_pred --------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC---------CCEEEEEECCCceeEeecc
Confidence 45889998877655443211 1122334443 5678886442 2468888776655443321
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
. ....-.++++. ++.||+...... .+++|++.+..-......+ ...-.++++.
T Consensus 147 ~------~~~~p~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~~~~~~~~~~~~----~~~p~~i~~d 200 (270)
T 1rwi_B 147 T------GLNDPDGVAVDNSGNVYVTDTDNN----------------RVVKLEAESNNQVVLPFTD----ITAPWGIAVD 200 (270)
T ss_dssp C------SCCSCCCEEECTTCCEEEEEGGGT----------------EEEEECTTTCCEEECCCSS----CCSEEEEEEC
T ss_pred c------cCCCceeEEEeCCCCEEEEECCCC----------------EEEEEecCCCceEeecccC----CCCceEEEEC
Confidence 1 00111234444 567887764432 3788888766543322111 1222344444
Q ss_pred -CCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
++.+|+.... .+.|++|++.+.
T Consensus 201 ~~g~l~v~~~~--------------~~~v~~~~~~~~ 223 (270)
T 1rwi_B 201 EAGTVYVTEHN--------------TNQVVKLLAGST 223 (270)
T ss_dssp TTCCEEEEETT--------------TSCEEEECTTCS
T ss_pred CCCCEEEEECC--------------CCcEEEEcCCCC
Confidence 4577776532 245888887654
No 63
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.19 E-value=0.18 Score=52.51 Aligned_cols=196 Identities=12% Similarity=0.027 Sum_probs=103.5
Q ss_pred ceEEEEeccCCC-EEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC--CEEEEEcCccCCC
Q 005655 71 NCSLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSP 147 (685)
Q Consensus 71 ~~s~~~~p~~~~-~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~iyvfGG~~~s~ 147 (685)
-.++...| ++ .+++.|+. + ..+.+||+.+.......... .....-.+++... +.+++.|+..
T Consensus 76 v~~~~~~~--~~~~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d--- 140 (383)
T 3ei3_B 76 VTSLEWHP--THPTTVAVGSK--G-------GDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSSIR--- 140 (383)
T ss_dssp EEEEEECS--SCTTEEEEEEB--T-------SCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEETT---
T ss_pred EEEEEECC--CCCCEEEEEcC--C-------CeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEeCC---
Confidence 34555665 44 68888873 2 36889999988776543321 1122223344444 3666666642
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
..+.+||+.+.....+... ........++.+ ++.+++.|+.+ ..|.+||+....-..+.
T Consensus 141 --------~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~ 201 (383)
T 3ei3_B 141 --------GATTLRDFSGSVIQVFAKT--DSWDYWYCCVDVSVSRQMLATGDST---------GRLLLLGLDGHEIFKEK 201 (383)
T ss_dssp --------TEEEEEETTSCEEEEEECC--CCSSCCEEEEEEETTTTEEEEEETT---------SEEEEEETTSCEEEEEE
T ss_pred --------CEEEEEECCCCceEEEecc--CCCCCCeEEEEECCCCCEEEEECCC---------CCEEEEECCCCEEEEec
Confidence 4578899988776665441 111111222222 55666777643 46888998544433333
Q ss_pred cCCCCCCCCCccceeEEEe-CCE-EEEEecccCCCCcccCCCCCCceeeeEEEEeCCC----ceeEEeecCCCCCCCcce
Q 005655 226 PRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAG 299 (685)
Q Consensus 226 ~~~~~~~P~~Rs~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t----~~W~~~~~~g~~P~~R~g 299 (685)
.. .. .-.+++.. ++. +++.|+.++. +.+||+.+ ........ ....-
T Consensus 202 ~h-----~~--~v~~~~~~~~~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~~~~~~~-----~~~~v 253 (383)
T 3ei3_B 202 LH-----KA--KVTHAEFNPRCDWLMATSSVDAT----------------VKLWDLRNIKDKNSYIAEMP-----HEKPV 253 (383)
T ss_dssp CS-----SS--CEEEEEECSSCTTEEEEEETTSE----------------EEEEEGGGCCSTTCEEEEEE-----CSSCE
T ss_pred cC-----CC--cEEEEEECCCCCCEEEEEeCCCE----------------EEEEeCCCCCcccceEEEec-----CCCce
Confidence 22 11 11223333 333 7788877654 67777765 32222211 11112
Q ss_pred eEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 300 ~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.++++. ++.+++.|+.. +.|.+||+.+..
T Consensus 254 ~~~~~s~~~~~~l~~~~~d--------------~~i~iwd~~~~~ 284 (383)
T 3ei3_B 254 NAAYFNPTDSTKLLTTDQR--------------NEIRVYSSYDWS 284 (383)
T ss_dssp EEEEECTTTSCEEEEEESS--------------SEEEEEETTBTT
T ss_pred EEEEEcCCCCCEEEEEcCC--------------CcEEEEECCCCc
Confidence 233333 45677777653 358899987653
No 64
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.16 E-value=0.57 Score=52.74 Aligned_cols=120 Identities=11% Similarity=0.099 Sum_probs=67.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEc-CCC--cEEEecCCCC---CCC---cceeEEEEECCEEEEEcCccCCCCCcc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~-~~~--~W~~l~s~~~---P~~---R~~ha~v~~~~~iyvfGG~~~s~~~~~ 151 (685)
++.||+.... .+.|++||. .+. .|+.-..... +.+ ....+.++.++.||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 123 (571)
T 2ad6_A 62 GDMMYVHSAF---------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--------- 123 (571)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---------
Confidence 7888887651 246999999 776 5886432210 000 112234566888888643
Q ss_pred ccccCeEEEEECCCC--cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEec
Q 005655 152 FHHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~--~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (685)
-..++.+|..|+ .|+.-............+.++.++.||+-.+.... .....|+.||+.+.+ |+.-.
T Consensus 124 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 ---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL----GVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG----TCCCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCcc----CCCCEEEEEECCCCcEEEEEcc
Confidence 146899999887 48753221000011122334568888775432110 113578999998754 87544
No 65
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.12 E-value=0.35 Score=55.23 Aligned_cols=194 Identities=8% Similarity=0.031 Sum_probs=100.6
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCC-cEEEcccCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCP 177 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g~P 177 (685)
..+++||+.+.+...+.... ........+.+ ++..++++...... ....++++|+.+. .+..+.....+
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~------~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGE--PKEKFLTNLSWSPDENILYVAEVNRAQ------NECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp EEEEEEETTTTEEEECCCCS--CTTCEEEEEEECTTSSEEEEEEECTTS------CEEEEEEEETTTCCEEEEEEEEECS
T ss_pred eEEEEEECCCCceEeeccCC--CCceeEeeEEEECCCCEEEEEEeCCCC------CeeEEEEEECCCCceeeEEEEccCC
Confidence 57999999998876665321 11122222333 45444444332211 2357999999998 77665431111
Q ss_pred CCC-ccceEEE-E--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccc-eeEEEeCCEEEEEe
Q 005655 178 SPR-SGHRMVL-Y--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG-FQFFVYQDEVFLYG 252 (685)
Q Consensus 178 ~~R-sgh~~v~-~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~-~s~~~~~~~Iyv~G 252 (685)
... ....++. - ++.+++.+...+ ...||.+|........+... ...... .++...+..||+.+
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g-------~~~l~~~~~~~~~~~~l~~~-----~~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDG-------WNHLYLYDTTGRLIRQVTKG-----EWEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTS-------SCEEEEEETTSCEEEECCCS-----SSCEEEEEEECTTSSEEEEEE
T ss_pred CeECccCCceeecCCCCEEEEEEccCC-------ccEEEEEECCCCEEEecCCC-----CeEEEeeeEEcCCCCEEEEEe
Confidence 110 0012222 2 567555554322 35789999777666666432 222222 11111244566665
Q ss_pred cccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCC
Q 005655 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLN 331 (685)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~n 331 (685)
.... .....+|.+|+.+.....+.. ....+++++- +++.+++..... ....
T Consensus 375 ~~~~------------~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~----------~~p~ 426 (706)
T 2z3z_A 375 TEAS------------PLERHFYCIDIKGGKTKDLTP------ESGMHRTQLSPDGSAIIDIFQSP----------TVPR 426 (706)
T ss_dssp SSSC------------TTCBEEEEEETTCCCCEESCC------SSSEEEEEECTTSSEEEEEEECS----------SCSC
T ss_pred cCCC------------CceEEEEEEEcCCCCceeccC------CCceEEEEECCCCCEEEEEecCC----------CCCc
Confidence 4422 112458999988877665542 1112333333 566666664432 1245
Q ss_pred cEEEEECCCCc
Q 005655 332 ELYGFQLDNHR 342 (685)
Q Consensus 332 dl~~yd~~t~~ 342 (685)
.+++||+.+..
T Consensus 427 ~i~l~d~~~~~ 437 (706)
T 2z3z_A 427 KVTVTNIGKGS 437 (706)
T ss_dssp EEEEEESSSCE
T ss_pred EEEEEECCCCe
Confidence 69999998887
No 66
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.06 E-value=0.032 Score=60.06 Aligned_cols=116 Identities=11% Similarity=0.080 Sum_probs=62.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
.++...|. ++.+++.|+. + ..|.+||+.+.....+.... .....-.+++.. ++.+++.||.+.
T Consensus 123 ~~l~~~P~-~~~~lasGs~--d-------g~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~~l~s~s~D~---- 187 (435)
T 4e54_B 123 TSLAWHPT-HPSTVAVGSK--G-------GDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEG---- 187 (435)
T ss_dssp EEEEECSS-CTTCEEEEET--T-------SCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTTEEEEECSSS----
T ss_pred EEEEEeCC-CCCEEEEEeC--C-------CEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCCEEEEEeCCC----
Confidence 35666664 3568888873 3 35888898776543332211 011111233332 455667776543
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.+-+||+.++....+.... .......++... ++.+++.|+.. ..|.+||+...
T Consensus 188 -------~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d---------g~i~~wd~~~~ 241 (435)
T 4e54_B 188 -------TTRLQDFKGNILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV---------GNVILLNMDGK 241 (435)
T ss_dssp -------CEEEEETTSCEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS---------SBEEEEESSSC
T ss_pred -------EEEEeeccCCceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC---------CcEeeeccCcc
Confidence 3678898887665554311 111112222222 56777777753 35788887654
No 67
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=96.04 E-value=0.22 Score=50.79 Aligned_cols=129 Identities=12% Similarity=0.018 Sum_probs=70.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++++.| ++.||+.+.. .+.|++||+.++++..+... ....-++++.. ++.+||.+.....
T Consensus 48 ~~~~~~~--~g~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~~---- 109 (333)
T 2dg1_A 48 EGLNFDR--QGQLFLLDVF---------EGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFK---- 109 (333)
T ss_dssp EEEEECT--TSCEEEEETT---------TCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSS----
T ss_pred cCcEECC--CCCEEEEECC---------CCEEEEEeCCCCcEEEEeeC---CCCCcceEEECCCCcEEEEeCCCCC----
Confidence 4455555 5778887652 13689999999988765421 12223344443 5778887543211
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
....+++||+.+.....+... ......-..+++. ++.||+....... ......|++||+.+.+...+.
T Consensus 110 ---~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~---~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 110 ---STGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYS---TNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp ---SCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBT---TBCCEEEEEECTTSCCEEEEE
T ss_pred ---CCceEEEEeCCCCEEEEEEcc-CccCCcccceEECCCCCEEEEeccccc---cCCCceEEEEeCCCCEEEEee
Confidence 124799999998876633221 1111111222222 5677775432110 012357899998877666553
No 68
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.27 Score=51.33 Aligned_cols=176 Identities=5% Similarity=-0.075 Sum_probs=86.0
Q ss_pred ccEEEEEcCCCcEEEecCCCCCC------------CcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcE
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPP------------PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW 168 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~------------~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W 168 (685)
+.+.+||+.+......-...... .....+++..++..+++|+.. ..+.+||+.+..-
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-----------GAIFVYQITEKTP 239 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG-----------GCEEEEETTCSSC
T ss_pred CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC-----------CeEEEEEcCCCce
Confidence 35778888777654322211000 000223333334446666643 4588999887642
Q ss_pred EEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CC
Q 005655 169 EQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD 246 (685)
Q Consensus 169 ~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~ 246 (685)
...-. .... .-.+++.. ++.+++.|+.. ..+.+||+.+......-.. ....-.+++.. ++
T Consensus 240 ~~~~~--~~~~-~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 240 TGKLI--GHHG-PISVLEFNDTNKLLLSASDD---------GTLRIWHGGNGNSQNCFYG------HSQSIVSASWVGDD 301 (425)
T ss_dssp SEEEC--CCSS-CEEEEEEETTTTEEEEEETT---------SCEEEECSSSBSCSEEECC------CSSCEEEEEEETTT
T ss_pred eeeec--cCCC-ceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCccceEecC------CCccEEEEEECCCC
Confidence 21111 0111 11222222 55566666643 3578888876543222211 11122333334 44
Q ss_pred EEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCcccc
Q 005655 247 EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVI 325 (685)
Q Consensus 247 ~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~ 325 (685)
+++.|+..+. +.+||+.+..-...... ....-.++++. ++.++++|+..
T Consensus 302 -~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d--------- 351 (425)
T 1r5m_A 302 -KVISCSMDGS----------------VRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYAVAFMD--------- 351 (425)
T ss_dssp -EEEEEETTSE----------------EEEEETTTTEEEEEEEC----TTCCEEEEEECTTSSEEEEEETT---------
T ss_pred -EEEEEeCCCc----------------EEEEECCCCcEeEeccc----CCccEEEEEEcCCCCEEEEEECC---------
Confidence 7777776544 78888877654333221 11112233333 56677777643
Q ss_pred ccccCCcEEEEECCC
Q 005655 326 MSLFLNELYGFQLDN 340 (685)
Q Consensus 326 ~~~~~ndl~~yd~~t 340 (685)
+.|.+||+.+
T Consensus 352 -----g~i~i~~~~~ 361 (425)
T 1r5m_A 352 -----GQVNVYDLKK 361 (425)
T ss_dssp -----SCEEEEECHH
T ss_pred -----CeEEEEECCC
Confidence 3488888764
No 69
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.76 Score=47.77 Aligned_cols=194 Identities=9% Similarity=-0.034 Sum_probs=97.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.++++|+. + ..+.+||........+... ...-.+++.. ++..+++|+..
T Consensus 112 ~~~~~s~--~~~~l~~~~~--d-------g~i~i~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d------ 170 (425)
T 1r5m_A 112 TCLAWSH--DGNSIVTGVE--N-------GELRLWNKTGALLNVLNFH----RAPIVSVKWNKDGTHIISMDVE------ 170 (425)
T ss_dssp EEEEECT--TSSEEEEEET--T-------SCEEEEETTSCEEEEECCC----CSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEEEcC--CCCEEEEEeC--C-------CeEEEEeCCCCeeeeccCC----CccEEEEEECCCCCEEEEEecC------
Confidence 3445555 5677777763 2 3578888555544444321 1122333333 45556666542
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCC--------------ccceEEEECCEEEEEccccCCCCceeeeceEEEEEc
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPR--------------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R--------------sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (685)
..+.+||+.+......-. .+... .-.+++...+..+++|+.. ..|.+||+
T Consensus 171 -----~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~i~~~d~ 234 (425)
T 1r5m_A 171 -----NVTILWNVISGTVMQHFE--LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK---------GAIFVYQI 234 (425)
T ss_dssp -----CCEEEEETTTTEEEEEEC--CC---------------CCCBSCCEEEETTEEEEECGG---------GCEEEEET
T ss_pred -----CeEEEEECCCCcEEEEee--ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC---------CeEEEEEc
Confidence 357788988776543322 11111 0223333444456666643 46889998
Q ss_pred CCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC
Q 005655 217 DQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG 295 (685)
Q Consensus 217 ~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~ 295 (685)
.+..-...-.. ....-.+++.. ++.+++.|+..+. +.+||+.+......-. ..
T Consensus 235 ~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~----~~ 288 (425)
T 1r5m_A 235 TEKTPTGKLIG------HHGPISVLEFNDTNKLLLSASDDGT----------------LRIWHGGNGNSQNCFY----GH 288 (425)
T ss_dssp TCSSCSEEECC------CSSCEEEEEEETTTTEEEEEETTSC----------------EEEECSSSBSCSEEEC----CC
T ss_pred CCCceeeeecc------CCCceEEEEECCCCCEEEEEcCCCE----------------EEEEECCCCccceEec----CC
Confidence 87543222111 11111223333 5567777776654 7778876643322211 11
Q ss_pred CcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 296 PRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 296 ~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
...-.++++..+.+++.|+.. ..|.+||+.+..
T Consensus 289 ~~~i~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~ 321 (425)
T 1r5m_A 289 SQSIVSASWVGDDKVISCSMD--------------GSVRLWSLKQNT 321 (425)
T ss_dssp SSCEEEEEEETTTEEEEEETT--------------SEEEEEETTTTE
T ss_pred CccEEEEEECCCCEEEEEeCC--------------CcEEEEECCCCc
Confidence 222344455533366666542 358899987764
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.76 Score=46.70 Aligned_cols=207 Identities=7% Similarity=-0.035 Sum_probs=98.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.+++.|+. + +.+.+||+.+..-...-.. ....-.+++.. ++.+++.|+..
T Consensus 36 ~~~~~s~--~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d------ 95 (369)
T 3zwl_B 36 TQVKYNK--EGDLLFSCSK--D-------SSASVWYSLNGERLGTLDG---HTGTIWSIDVDCFTKYCVTGSAD------ 95 (369)
T ss_dssp EEEEECT--TSCEEEEEES--S-------SCEEEEETTTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEEEcC--CCCEEEEEeC--C-------CEEEEEeCCCchhhhhhhh---cCCcEEEEEEcCCCCEEEEEeCC------
Confidence 3445555 5667777762 2 3688999887765432221 11112223333 45666666642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCc----eEEec
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK----WQEIK 225 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~----W~~v~ 225 (685)
..+.+||+.+......-. .+.+ -.+++.. ++.+++.++..... ....+.+||+.+.. +....
T Consensus 96 -----g~i~iwd~~~~~~~~~~~--~~~~--v~~~~~~~~~~~l~~~~~~~~~----~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 96 -----YSIKLWDVSNGQCVATWK--SPVP--VKRVEFSPCGNYFLAILDNVMK----NPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp -----TEEEEEETTTCCEEEEEE--CSSC--EEEEEECTTSSEEEEEECCBTT----BCCEEEEEEEEECTTTCCEEEEC
T ss_pred -----CeEEEEECCCCcEEEEee--cCCC--eEEEEEccCCCEEEEecCCccC----CCCEEEEEEecCCccceeecccc
Confidence 458899998876544332 1111 1122222 45555555532111 12456777665432 22211
Q ss_pred cCCCCCCC--CCc-cceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC-ceeEEeecCCCCCCCccee
Q 005655 226 PRFGSMWP--SPR-SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGF 300 (685)
Q Consensus 226 ~~~~~~~P--~~R-s~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~~~~~g~~P~~R~g~ 300 (685)
..+...+. ... .-.+++.. ++.+++.|+..+. +.+||+.+ ..-...... ....-.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~----~~~~v~ 222 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK----------------ISKYDVSNNYEYVDSIDL----HEKSIS 222 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE----------------EEEEETTTTTEEEEEEEC----CSSCEE
T ss_pred cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE----------------EEEEECCCCcEeEEEEec----CCCcee
Confidence 11000000 000 11122222 5566777776544 78889876 332222211 111223
Q ss_pred EEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 301 SMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 301 s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
++++. ++.+++.|+.. ..|.+||+.+.....
T Consensus 223 ~~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 223 DMQFSPDLTYFITSSRD--------------TNSFLVDVSTLQVLK 254 (369)
T ss_dssp EEEECTTSSEEEEEETT--------------SEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEecCC--------------ceEEEEECCCCceee
Confidence 34443 56666766542 358899988765443
No 71
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.87 E-value=0.21 Score=52.80 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=89.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCc
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS 181 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs 181 (685)
.+.+||+.+......-.. ......++.+++.+++.|+.. ..+.+||+.+..-......+ ...
T Consensus 157 ~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~---~~~ 218 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMAG----HQARVGCLSWNRHVLSSGSRS-----------GAIHHHDVRIANHQIGTLQG---HSS 218 (401)
T ss_dssp CEEEEETTTCCEEEEECC----CSSCEEEEEEETTEEEEEETT-----------SEEEEEETTSSSCEEEEEEC---CSS
T ss_pred eEEEEECcCCeEEEEecC----CCCceEEEEECCCEEEEEcCC-----------CCEEEEecccCcceeeEEcC---CCC
Confidence 578888887764432221 111222333355666677643 45888888743322111111 111
Q ss_pred cceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEec--ccCC
Q 005655 182 GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG--YSKE 257 (685)
Q Consensus 182 gh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG--~~~~ 257 (685)
....+.+ ++.+++.|+.+ ..|.+||+.+..-...-.. . ..+....++...+..+++.|| ..+
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~-~---~~~v~~~~~~p~~~~ll~~~~gs~d~- 284 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGND---------NVVQIWDARSSIPKFTKTN-H---NAAVKAVAWCPWQSNLLATGGGTMDK- 284 (401)
T ss_dssp CEEEEEECTTSSEEEEEETT---------SCEEEEETTCSSEEEEECC-C---SSCCCEEEECTTSTTEEEEECCTTTC-
T ss_pred CeeEEEEcCCCCEEEEEeCC---------CeEEEccCCCCCccEEecC-C---cceEEEEEECCCCCCEEEEecCCCCC-
Confidence 1222333 56677777753 4688999887543322111 0 112222222222556777775 333
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE-ecceecccCCccccccccCCcEEE
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL-FGGVVDMEMKGDVIMSLFLNELYG 335 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv-fGG~~~~~~~~~~~~~~~~ndl~~ 335 (685)
.+.+||+.+..-...-.. ...-.++++. ++..++ .+|..+ +.|.+
T Consensus 285 ---------------~i~i~d~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d-------------g~i~v 331 (401)
T 4aez_A 285 ---------------QIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFPD-------------NNLSI 331 (401)
T ss_dssp ---------------EEEEEETTTCCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTTT-------------CEEEE
T ss_pred ---------------EEEEEECCCCCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecCC-------------CcEEE
Confidence 377888876654433221 1112233333 444444 434322 45899
Q ss_pred EECCCCcEEEEE
Q 005655 336 FQLDNHRWYPLE 347 (685)
Q Consensus 336 yd~~t~~W~~l~ 347 (685)
||+.+.....+.
T Consensus 332 ~~~~~~~~~~~~ 343 (401)
T 4aez_A 332 WSYSSSGLTKQV 343 (401)
T ss_dssp EEEETTEEEEEE
T ss_pred EecCCccceeEE
Confidence 998887666543
No 72
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.85 E-value=0.26 Score=51.00 Aligned_cols=190 Identities=9% Similarity=0.092 Sum_probs=96.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.+++.||. + ..+.+||..++.|.............-.+++.. ++.+++.|+...
T Consensus 20 ~~l~~sp--~g~~las~~~--D-------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~----- 83 (345)
T 3fm0_A 20 WFLAWNP--AGTLLASCGG--D-------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA----- 83 (345)
T ss_dssp EEEEECT--TSSCEEEEET--T-------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred EEEEECC--CCCEEEEEcC--C-------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-----
Confidence 4566676 6778888873 2 357888888888763221100011112222222 466777777533
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC-ceEEeccC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPR 227 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~~~ 227 (685)
.+.+||..+..+..+.. +......-..+.+ ++.+++.|+.+ ..|.+||+.+. .+..+...
T Consensus 84 ------~v~iw~~~~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 84 ------TTCIWKKNQDDFECVTT--LEGHENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp ------CEEEEEECCC-EEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTTSCEEEEEEE
T ss_pred ------cEEEEEccCCCeEEEEE--ccCCCCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCCCCeEEEEEe
Confidence 36677777776655443 1111111223333 56677777753 35778887654 23333322
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-
Q 005655 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~- 305 (685)
.. ....-.+++.. ++.+++.|+..+. +.+||..+..|..+..... ....-.++++.
T Consensus 147 ~~----h~~~v~~~~~~p~~~~l~s~s~d~~----------------i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~sp 204 (345)
T 3fm0_A 147 NS----HTQDVKHVVWHPSQELLASASYDDT----------------VKLYREEEDDWVCCATLEG--HESTVWSLAFDP 204 (345)
T ss_dssp CC----CCSCEEEEEECSSSSCEEEEETTSC----------------EEEEEEETTEEEEEEEECC--CSSCEEEEEECT
T ss_pred cC----cCCCeEEEEECCCCCEEEEEeCCCc----------------EEEEEecCCCEEEEEEecC--CCCceEEEEECC
Confidence 11 01111122222 5667778877655 6677877777765443211 11112233333
Q ss_pred CCeEEEeccee
Q 005655 306 KKRALLFGGVV 316 (685)
Q Consensus 306 ~~~iyvfGG~~ 316 (685)
+++.++.|+..
T Consensus 205 ~g~~l~s~s~D 215 (345)
T 3fm0_A 205 SGQRLASCSDD 215 (345)
T ss_dssp TSSEEEEEETT
T ss_pred CCCEEEEEeCC
Confidence 56677777653
No 73
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.84 E-value=0.41 Score=49.12 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=55.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.+++.|+. + ..+.+||+.+.++....... .....-.+++.. ++.++++|+...
T Consensus 56 ~~~~~~~--~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~----- 118 (372)
T 1k8k_C 56 TGVDWAP--DSNRIVTCGT--D-------RNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGSR----- 118 (372)
T ss_dssp EEEEEET--TTTEEEEEET--T-------SCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred cEEEEeC--CCCEEEEEcC--C-------CeEEEEECCCCeeeeeEEee-cCCCceeEEEECCCCCEEEEEeCCC-----
Confidence 3455555 4666677662 2 35888999888876443221 111222223333 456667776432
Q ss_pred cccccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 151 RFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
.+.+||+.+.. |........+....-.+++.. ++.+++.|+.. ..+.+||+.
T Consensus 119 ------~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~ 172 (372)
T 1k8k_C 119 ------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---------FKCRIFSAY 172 (372)
T ss_dssp ------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT---------SCEEEEECC
T ss_pred ------EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC---------CCEEEEEcc
Confidence 35555554443 332222101111111222222 55677777753 357788854
No 74
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.79 E-value=0.5 Score=46.18 Aligned_cols=187 Identities=8% Similarity=0.025 Sum_probs=100.0
Q ss_pred eccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCC-CcEEEcccCCCC
Q 005655 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-NQWEQLNLKGCP 177 (685)
Q Consensus 100 ~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t-~~W~~~~~~g~P 177 (685)
-..+++||+.++....+... ...-.+++.. ++..+++++. ..+++||+.+ .....+.. .+
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~------------~~i~~~d~~~~~~~~~~~~--~~ 82 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT----PELFEAPNWSPDGKYLLLNSE------------GLLYRLSLAGDPSPEKVDT--GF 82 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE----SSCCEEEEECTTSSEEEEEET------------TEEEEEESSSCCSCEECCC--TT
T ss_pred ceeEEEEeCCCCceeeeccC----CcceEeeEECCCCCEEEEEcC------------CeEEEEeCCCCCCceEecc--cc
Confidence 35799999999887765432 1112233333 4555566531 4699999998 87776653 12
Q ss_pred C-CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecc
Q 005655 178 S-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (685)
Q Consensus 178 ~-~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~ 254 (685)
. .........-++..+++++.... ....||.+++.+.....+... . + .+.+... +..|++.++.
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~-----~-~--~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEF-----GKSAIYLLPSTGGTPRLMTKN-----L-P--SYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTT-----SSCEEEEEETTCCCCEECCSS-----S-S--EEEEEECTTSSEEEEEEEE
T ss_pred ccccccceEECCCCCEEEEEEeCCC-----CcceEEEEECCCCceEEeecC-----C-C--ccceEECCCCCEEEEEECC
Confidence 1 12222222225566666653221 146799999888776555433 1 1 2222333 4445545544
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcE
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (685)
... ..+|.+++.+.....+... ...-.++++. +++.+++++..+ ....|
T Consensus 150 ~~~--------------~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~-----------~~~~i 199 (297)
T 2ojh_A 150 DQV--------------FDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSRT-----------GQMQI 199 (297)
T ss_dssp TTE--------------EEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECTT-----------SSCEE
T ss_pred CCc--------------eEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecCC-----------CCccE
Confidence 321 3588888877766555331 1112233333 555555544321 13568
Q ss_pred EEEECCCCcEEEEE
Q 005655 334 YGFQLDNHRWYPLE 347 (685)
Q Consensus 334 ~~yd~~t~~W~~l~ 347 (685)
|.+++.+.....+.
T Consensus 200 ~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 200 WRVRVDGSSVERIT 213 (297)
T ss_dssp EEEETTSSCEEECC
T ss_pred EEECCCCCCcEEEe
Confidence 88887776655443
No 75
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.79 E-value=2.1 Score=44.07 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=88.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
.+.+|++|- .+ -+++..-.-.+|+.+.....+......++++.++.+|+.|.. ..+++
T Consensus 46 ~~~~~~~G~---~g-------~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~------------g~i~~ 103 (327)
T 2xbg_A 46 RHHGWLVGV---NA-------TLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP------------PIMLH 103 (327)
T ss_dssp SSCEEEEET---TT-------EEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET------------TEEEE
T ss_pred CCcEEEEcC---CC-------eEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC------------CeEEE
Confidence 467888653 11 244432234589988653211122334445557888887521 23444
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccce
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~ 239 (685)
-.-.-.+|+.+.... +.+-..+.++. -++.+|+.|.. ..|++-.=.-.+|+.+... .+..-+
T Consensus 104 S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~----------g~v~~S~DgG~tW~~~~~~------~~~~~~ 166 (327)
T 2xbg_A 104 TTDGGQSWSQIPLDP-KLPGSPRLIKALGNGSAEMITNV----------GAIYRTKDSGKNWQALVQE------AIGVMR 166 (327)
T ss_dssp ESSTTSSCEECCCCT-TCSSCEEEEEEEETTEEEEEETT----------CCEEEESSTTSSEEEEECS------CCCCEE
T ss_pred ECCCCCCceECcccc-CCCCCeEEEEEECCCCEEEEeCC----------ccEEEEcCCCCCCEEeecC------CCcceE
Confidence 222246899987521 11112233433 36788887641 1233322234679998754 122334
Q ss_pred eEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEe-CCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecc
Q 005655 240 QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (685)
Q Consensus 240 s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG 314 (685)
+++.. ++.+|++|- .+. +++-. ....+|+.+.. +.+...+.+++. ++.+|+++.
T Consensus 167 ~~~~~~~~~~~~~g~-~G~----------------~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~ 223 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-RGS----------------FYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVN 223 (327)
T ss_dssp EEEECTTSCEEEEET-TSS----------------EEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEET
T ss_pred EEEEcCCCcEEEEEC-CCc----------------EEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeC
Confidence 44444 556666553 222 34433 33678999853 233444555543 567777653
No 76
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.77 E-value=0.5 Score=53.45 Aligned_cols=226 Identities=13% Similarity=-0.005 Sum_probs=118.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCC-CceeeeccEEEEEcCC------CcEEEec-CCCCCCCcceeEEEEE-CCEEEEEcC
Q 005655 72 CSLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEK------QEWKVIS-SPNSPPPRSAHQAVSW-KNYLYIFGG 142 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g-~~~~~~ndv~~yd~~~------~~W~~l~-s~~~P~~R~~ha~v~~-~~~iyvfGG 142 (685)
.+++..| +++.++++...... ........+|++|+.+ ...+.+. ... ...+..+.- +++.+++..
T Consensus 133 ~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 133 ADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH----RFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp EEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS----SEECCCEECTTSSEEEEEE
T ss_pred cCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC----CcccCceECCCCCEEEEEE
Confidence 3455566 55555555532100 0012346899999998 7777665 321 111222222 454444444
Q ss_pred ccCCCCCccccccCeEEEEECC-CC---cEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEc
Q 005655 143 EFTSPNQERFHHYKDFWMLDLK-TN---QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~-t~---~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (685)
....... .....+|++|+. ++ ....+... . ........+ +++||+.+...+ ...||.+|+
T Consensus 207 ~~~~~~~---~~~~~i~~~d~~~~g~~~~~~~l~~~--~--~~~~~~~~~spdg~l~~~~~~~~-------~~~l~~~~~ 272 (662)
T 3azo_A 207 WDHPRMP---WEGTELKTARVTEDGRFADTRTLLGG--P--EEAIAQAEWAPDGSLIVATDRTG-------WWNLHRVDP 272 (662)
T ss_dssp ECTTCCT---TTCEEEEEEEECTTSCEEEEEEEEEE--T--TBCEEEEEECTTSCEEEEECTTS-------SCEEEEECT
T ss_pred CCCCCCC---CCCcEEEEEEECCCCcccccEEeCCC--C--CceEcceEECCCCeEEEEECCCC-------CeEEEEEEC
Confidence 3221110 112579999998 56 44444331 1 112223333 567776655432 247999999
Q ss_pred CCCceEEeccCCCCC-CCCCcc-ceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCC
Q 005655 217 DQFKWQEIKPRFGSM-WPSPRS-GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (685)
Q Consensus 217 ~t~~W~~v~~~~~~~-~P~~Rs-~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~ 293 (685)
.+..+..+....... .|.-.. ..+++.. ++.+++.+.. +. ..+|.+|+.+.....+..
T Consensus 273 ~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~--------------~~l~~~d~~~~~~~~l~~---- 333 (662)
T 3azo_A 273 ATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA--------------AVLGILDPESGELVDAAG---- 333 (662)
T ss_dssp TTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS--------------CEEEEEETTTTEEEECCS----
T ss_pred CCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc--------------cEEEEEECCCCcEEEecC----
Confidence 888888876542111 011111 1233333 6677766654 32 358889988887766643
Q ss_pred CCCcceeEE-EEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 294 PGPRAGFSM-CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 294 P~~R~g~s~-~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+. ....++ ..-++.+++..+..+ ....||.+|+.+.....+..
T Consensus 334 ~~-~~~~~~~s~~~~~~~~~~~~~~-----------~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 334 PW-TEWAATLTVSGTRAVGVAASPR-----------TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp SC-CEEEEEEEEETTEEEEEEEETT-----------EEEEEEEEETTTCCEEEEES
T ss_pred CC-CeEEEEEecCCCEEEEEEcCCC-----------CCCEEEEEECCCCceEEeec
Confidence 11 112223 344666666554322 13569999999988877653
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.71 E-value=1.1 Score=47.77 Aligned_cols=154 Identities=11% Similarity=0.053 Sum_probs=78.0
Q ss_pred ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEE
Q 005655 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 133 ~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
+++..++.|+.. +.+.+||+.+..-...-. .......++.+.+.+++.|+.+ ..|.
T Consensus 287 ~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~l~~~~~d---------g~i~ 342 (445)
T 2ovr_B 287 FDGIHVVSGSLD-----------TSIRVWDVETGNCIHTLT----GHQSLTSGMELKDNILVSGNAD---------STVK 342 (445)
T ss_dssp ECSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----CCCSCEEEEEEETTEEEEEETT---------SCEE
T ss_pred ECCCEEEEEeCC-----------CeEEEEECCCCCEEEEEc----CCcccEEEEEEeCCEEEEEeCC---------CeEE
Confidence 355566666542 357888988765432211 1111222334455566666643 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec-CC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK-IG 291 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~-~g 291 (685)
+||+.+..-...-..+ .........+.+++.+++.|+.++. +.+||+.+.+....-. ..
T Consensus 343 vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~s~~~dg~----------------v~iwd~~~~~~~~~~~~~~ 402 (445)
T 2ovr_B 343 IWDIKTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGT----------------VKLWDLKTGEFIRNLVTLE 402 (445)
T ss_dssp EEETTTCCEEEEECST----TSCSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEEECT
T ss_pred EEECCCCcEEEEEccC----CCCCCCEEEEEECCCEEEEEeCCCe----------------EEEEECCCCceeeeeeccc
Confidence 8998776533222110 0111222233346677888877655 7788888776544321 10
Q ss_pred CCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 292 MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 292 ~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
..+..-.-.++++. ++.++++|+..+. .-..|++||...
T Consensus 403 ~~~~~~~v~~~~~s~~~~~la~~~~dg~----------~~~~l~v~df~~ 442 (445)
T 2ovr_B 403 SGGSGGVVWRIRASNTKLVCAVGSRNGT----------EETKLLVLDFDV 442 (445)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSSS----------SCCEEEEEECCC
T ss_pred cCCCCceEEEEEecCCEEEEEEcccCCC----------CccEEEEEECCC
Confidence 00111112233333 4556666765442 124588888764
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=95.70 E-value=2.5 Score=44.99 Aligned_cols=133 Identities=8% Similarity=0.072 Sum_probs=70.3
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
..+.+||+.+..-...-. ...... .+++.. ++..++.|+.+ ..|.+||+.+.+-...-..
T Consensus 290 ~~i~vwd~~~~~~~~~~~--~~~~~v-~~~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~------- 350 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLYILS--GHTDRI-YSTIYDHERKRCISASMD---------TTIRIWDLENGELMYTLQG------- 350 (464)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSSCE-EEEEEETTTTEEEEEETT---------SCEEEEETTTTEEEEEECC-------
T ss_pred CeEEEEECCCCcEEEEec--CCCCCE-EEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEEEEEeC-------
Confidence 358889988765433221 111111 122222 45566666643 4588999887653322111
Q ss_pred CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecc
Q 005655 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (685)
Q Consensus 235 ~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (685)
.......+.+.+..++.|+.++. +.+||+.+..-...... .......+...++.+++.|+
T Consensus 351 h~~~v~~~~~~~~~l~s~s~dg~----------------v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 351 HTALVGLLRLSDKFLVSAAADGS----------------IRGWDANDYSRKFSYHH----TNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp CSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEEC----TTCCCEEEEEECSSEEEEEE
T ss_pred CCCcEEEEEEcCCEEEEEeCCCc----------------EEEEECCCCceeeeecC----CCCccEEEEEeCCCEEEEec
Confidence 11122333345677777877654 77888876542222211 12223333444777777776
Q ss_pred eecccCCccccccccCCcEEEEECCCCc
Q 005655 315 VVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
. +.|.+||+.+..
T Consensus 411 -d--------------g~i~iwd~~~g~ 423 (464)
T 3v7d_B 411 -E--------------NQFNIYNLRSGK 423 (464)
T ss_dssp -T--------------TEEEEEETTTCC
T ss_pred -C--------------CeEEEEECCCCc
Confidence 2 348999988764
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.69 E-value=1.2 Score=46.69 Aligned_cols=181 Identities=8% Similarity=-0.021 Sum_probs=96.9
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
+.+++||+.++....+.... ....-.+++.. ++.++++|+.. ..+.+||+.+......-. ..
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~----~~ 175 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSFLSVGLGN-----------GLVDIYDVESQTKLRTMA----GH 175 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----CC
T ss_pred CeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCEEEEECCC-----------CeEEEEECcCCeEEEEec----CC
Confidence 46899999998876554321 11222233333 45666777643 357889988776443221 12
Q ss_pred CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCC
Q 005655 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (685)
Q Consensus 180 Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~ 258 (685)
.....++.+++.+++.|+.. ..|.+||+.+..-...... .....-.++... ++.+++.|+.++.
T Consensus 176 ~~~v~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~- 240 (401)
T 4aez_A 176 QARVGCLSWNRHVLSSGSRS---------GAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNV- 240 (401)
T ss_dssp SSCEEEEEEETTEEEEEETT---------SEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred CCceEEEEECCCEEEEEcCC---------CCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCe-
Confidence 22233445567777777753 4688888874332222111 111111222233 6678888887655
Q ss_pred CcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccCCccccccccCCcEEEE
Q 005655 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (685)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~y 336 (685)
+.+||+.+..-..... .....-.++++. +..+++.||-.. -..|.+|
T Consensus 241 ---------------v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~------------d~~i~i~ 289 (401)
T 4aez_A 241 ---------------VQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTM------------DKQIHFW 289 (401)
T ss_dssp ---------------EEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTT------------TCEEEEE
T ss_pred ---------------EEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCC------------CCEEEEE
Confidence 7788887654332211 111122344444 456777764211 2459999
Q ss_pred ECCCCcEE
Q 005655 337 QLDNHRWY 344 (685)
Q Consensus 337 d~~t~~W~ 344 (685)
|+.+..-.
T Consensus 290 d~~~~~~~ 297 (401)
T 4aez_A 290 NAATGARV 297 (401)
T ss_dssp ETTTCCEE
T ss_pred ECCCCCEE
Confidence 99876544
No 80
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.67 E-value=0.35 Score=51.83 Aligned_cols=187 Identities=8% Similarity=-0.008 Sum_probs=98.8
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
..|+++|+....-+.+.... ..-.+++.. ++..+++++.... ...++++|+.++....+.. .+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~----~~v~~~~~Spdg~~la~~s~~~~--------~~~i~~~d~~tg~~~~l~~--~~~- 223 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP----QPLMSPAWSPDGSKLAYVTFESG--------RSALVIQTLANGAVRQVAS--FPR- 223 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES----SCEEEEEECTTSSEEEEEECTTS--------SCEEEEEETTTCCEEEEEC--CSS-
T ss_pred ceEEEEcCCCCCCEEEeCCC----CcceeeEEcCCCCEEEEEEecCC--------CcEEEEEECCCCcEEEeec--CCC-
Confidence 46778887765544443211 111222222 4555555553221 2579999999998876654 221
Q ss_pred CccceEEEE--CCE-EEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEeccc
Q 005655 180 RSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (685)
Q Consensus 180 Rsgh~~v~~--~~~-lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~ 255 (685)
...++.+ ++. |++.+...+ ...|++||+.+.....+... +.. ..+++.. ++..+++++..
T Consensus 224 --~~~~~~~spdg~~la~~~~~~g-------~~~i~~~d~~~~~~~~l~~~-----~~~--~~~~~~spdg~~l~~~s~~ 287 (415)
T 2hqs_A 224 --HNGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RSN--NTEPTWFPDSQNLAFTSDQ 287 (415)
T ss_dssp --CEEEEEECTTSSEEEEEECTTS-------SCEEEEEETTTCCEEECCCC-----SSC--EEEEEECTTSSEEEEEECT
T ss_pred --cccCEEEcCCCCEEEEEEecCC-------CceEEEEECCCCCEEeCcCC-----CCc--ccceEECCCCCEEEEEECC
Confidence 2223334 444 554444322 35799999998877665433 111 1222222 44444444322
Q ss_pred CCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEE
Q 005655 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
.. ...+|.+|+.+..-..+... .....++++. +++.+++++..+. ...|+
T Consensus 288 ~g-------------~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~g-----------~~~i~ 338 (415)
T 2hqs_A 288 AG-------------RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG-----------QQHIA 338 (415)
T ss_dssp TS-------------SCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECSS-----------CEEEE
T ss_pred CC-------------CcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcCC-----------ceEEE
Confidence 11 13589999888765544321 2222233333 5666666654320 34699
Q ss_pred EEECCCCcEEEEE
Q 005655 335 GFQLDNHRWYPLE 347 (685)
Q Consensus 335 ~yd~~t~~W~~l~ 347 (685)
+||+.+.....+.
T Consensus 339 ~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 339 KQDLATGGVQVLS 351 (415)
T ss_dssp EEETTTCCEEECC
T ss_pred EEECCCCCEEEec
Confidence 9999988775543
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.67 E-value=0.44 Score=50.16 Aligned_cols=211 Identities=12% Similarity=0.110 Sum_probs=102.7
Q ss_pred EEEEeccCCC-EEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~-~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
++...| ++ .+++.|+. + +.+.+||+.+.+....-... .....-.+++.. ++.+++.|+..
T Consensus 136 ~~~~~p--~~~~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------ 197 (402)
T 2aq5_A 136 IVAWHP--TAQNVLLSAGC--D-------NVILVWDVGTGAAVLTLGPD-VHPDTIYSVDWSRDGALICTSCRD------ 197 (402)
T ss_dssp EEEECS--SBTTEEEEEET--T-------SCEEEEETTTTEEEEEECTT-TCCSCEEEEEECTTSSCEEEEETT------
T ss_pred EEEECc--CCCCEEEEEcC--C-------CEEEEEECCCCCccEEEecC-CCCCceEEEEECCCCCEEEEEecC------
Confidence 344555 33 46666662 2 35889999988765332100 011122233333 46666776642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCce-EEeccCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRF 228 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~ 228 (685)
..+.+||+.+..-...-..+....+. .+++.. ++.+++.|.. .. .-..|.+||+.+..- ..+...
T Consensus 198 -----~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~g~~-~~-----~d~~i~iwd~~~~~~~~~~~~~- 264 (402)
T 2aq5_A 198 -----KRVRVIEPRKGTVVAEKDRPHEGTRP-VHAVFVSEGKILTTGFS-RM-----SERQVALWDTKHLEEPLSLQEL- 264 (402)
T ss_dssp -----SEEEEEETTTTEEEEEEECSSCSSSC-CEEEECSTTEEEEEEEC-TT-----CCEEEEEEETTBCSSCSEEEEC-
T ss_pred -----CcEEEEeCCCCceeeeeccCCCCCcc-eEEEEcCCCcEEEEecc-CC-----CCceEEEEcCccccCCceEEec-
Confidence 46889999887654332111111212 223332 5666666521 11 135788999876442 111111
Q ss_pred CCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce--eEEeecCCCCCCCcceeEEEE
Q 005655 229 GSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCV 304 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~~~~~g~~P~~R~g~s~~~ 304 (685)
+....-.+++.. +..||+.|+.++. +.+|++.+.. ...+.... ....-.++++
T Consensus 265 ----~~~~~v~~~~~s~~~~~l~~~g~~dg~----------------i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~ 321 (402)
T 2aq5_A 265 ----DTSSGVLLPFFDPDTNIVYLCGKGDSS----------------IRYFEITSEAPFLHYLSMFS---SKESQRGMGY 321 (402)
T ss_dssp ----CCCSSCEEEEEETTTTEEEEEETTCSC----------------EEEEEECSSTTCEEEEEEEC---CSSCCSEEEE
T ss_pred ----cCCCceeEEEEcCCCCEEEEEEcCCCe----------------EEEEEecCCCcceEeecccc---cCCcccceEE
Confidence 111112222333 5566677765554 6677766554 33333211 1111223444
Q ss_pred ECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEecCCC
Q 005655 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEK 352 (685)
Q Consensus 305 ~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~ 352 (685)
..+..+++.+. ..+.+|++.++...++....+.
T Consensus 322 sp~~~~~~s~~---------------~~~~~~~l~~~~~~~i~~~~pr 354 (402)
T 2aq5_A 322 MPKRGLEVNKC---------------EIARFYKLHERKCEPIAMTVPR 354 (402)
T ss_dssp CCGGGSCGGGT---------------EEEEEEEEETTEEEEEEEECCC
T ss_pred ecccccceecc---------------eeEEEEEcCCCcEEEEEEEccc
Confidence 44333333321 2477888888887777665443
No 82
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=95.64 E-value=1.4 Score=45.26 Aligned_cols=135 Identities=11% Similarity=0.014 Sum_probs=70.9
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (685)
..+.+||+.+..-...-. .... ...++.+ ++.+++.|+.+ ..|.+||+.+..-...-..
T Consensus 164 ~~i~~wd~~~~~~~~~~~--~h~~--~v~~~~~~~~~~~l~sg~~d---------~~v~~wd~~~~~~~~~~~~------ 224 (340)
T 1got_B 164 TTCALWDIETGQQTTTFT--GHTG--DVMSLSLAPDTRLFVSGACD---------ASAKLWDVREGMCRQTFTG------ 224 (340)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSS--CEEEEEECTTSSEEEEEETT---------SCEEEEETTTCSEEEEECC------
T ss_pred CcEEEEECCCCcEEEEEc--CCCC--ceEEEEECCCCCEEEEEeCC---------CcEEEEECCCCeeEEEEcC------
Confidence 357888998876443211 1111 1122223 56677777753 3578889877653322111
Q ss_pred CCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeE-EEEE-CCeEE
Q 005655 234 SPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS-MCVH-KKRAL 310 (685)
Q Consensus 234 ~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s-~~~~-~~~iy 310 (685)
....-.+++.. ++.+++.|+.++. +.+||+.+..-...... +....+.. +++. +++++
T Consensus 225 h~~~v~~v~~~p~~~~l~s~s~d~~----------------v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 225 HESDINAICFFPNGNAFATGSDDAT----------------CRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEE
T ss_pred CcCCEEEEEEcCCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEE
Confidence 11111223333 6677888887765 77888876543322111 11112223 3333 56777
Q ss_pred EecceecccCCccccccccCCcEEEEECCCCc
Q 005655 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+.|+.. ..|.+||+.+..
T Consensus 286 ~~g~~d--------------~~i~vwd~~~~~ 303 (340)
T 1got_B 286 LAGYDD--------------FNCNVWDALKAD 303 (340)
T ss_dssp EEEETT--------------SEEEEEETTTCC
T ss_pred EEECCC--------------CeEEEEEcccCc
Confidence 777653 358899986643
No 83
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.62 E-value=2 Score=49.46 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=67.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCCC---CCc---ceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PPR---SAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P---~~R---~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++.||+.+. .+.|+++|..++ .|+.-...... ... ...+.++.++.||+...
T Consensus 70 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------- 129 (689)
T 1yiq_A 70 DGVMYTTGP----------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------- 129 (689)
T ss_dssp TTEEEEECG----------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEEcC----------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc----------
Confidence 688888654 246999999877 48854321100 000 11234556888887542
Q ss_pred cccCeEEEEECCCCc--EEEccc-CCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEe
Q 005655 153 HHYKDFWMLDLKTNQ--WEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEI 224 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~-~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v 224 (685)
-..++.||..|++ |+.-.. ..........+.++.++.||+-.+.... .....|+.||+.|.+ |+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF----GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc----CCCCEEEEEECCCCcEEEEec
Confidence 1468899998875 876442 1111112222345678888774332111 124579999998865 8765
No 84
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.72 Score=49.49 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=37.3
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
+.+++.|+.. ..+.+||+.+......-..+ ......+.+.. ++.+++.||.+ ..|.+|
T Consensus 210 ~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~s-d~~~l~s~~~d---------~~v~vw 267 (450)
T 2vdu_B 210 HQFIITSDRD-----------EHIKISHYPQCFIVDKWLFG-HKHFVSSICCG-KDYLLLSAGGD---------DKIFAW 267 (450)
T ss_dssp CEEEEEEETT-----------SCEEEEEESCTTCEEEECCC-CSSCEEEEEEC-STTEEEEEESS---------SEEEEE
T ss_pred CcEEEEEcCC-----------CcEEEEECCCCceeeeeecC-CCCceEEEEEC-CCCEEEEEeCC---------CeEEEE
Confidence 6677777753 35788888776543321111 11111222222 66677777742 468889
Q ss_pred EcCCCceE
Q 005655 215 DLDQFKWQ 222 (685)
Q Consensus 215 D~~t~~W~ 222 (685)
|+.+.+..
T Consensus 268 d~~~~~~~ 275 (450)
T 2vdu_B 268 DWKTGKNL 275 (450)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEe
Confidence 98877643
No 85
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.57 E-value=1.4 Score=46.97 Aligned_cols=137 Identities=10% Similarity=0.048 Sum_probs=72.4
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCc
Q 005655 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (685)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (685)
.+.+||+.+..-...- ........++.+++..++.|+.+ ..+.+||+.+..-...-.. ..
T Consensus 260 ~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~-------~~ 319 (445)
T 2ovr_B 260 MVKVWDPETETCLHTL----QGHTNRVYSLQFDGIHVVSGSLD---------TSIRVWDVETGNCIHTLTG-------HQ 319 (445)
T ss_dssp CEEEEEGGGTEEEEEE----CCCSSCEEEEEECSSEEEEEETT---------SCEEEEETTTCCEEEEECC-------CC
T ss_pred EEEEEECCCCcEeEEe----cCCCCceEEEEECCCEEEEEeCC---------CeEEEEECCCCCEEEEEcC-------Cc
Confidence 4677777665432211 11112223344477777777753 4588899887653322211 11
Q ss_pred cceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEeccee
Q 005655 237 SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (685)
Q Consensus 237 s~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~ 316 (685)
.....+...+.+++.|+.++. +.+||+.+..-...-.. .........++.+++.+++.|+..
T Consensus 320 ~~v~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d 381 (445)
T 2ovr_B 320 SLTSGMELKDNILVSGNADST----------------VKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNFVITSSDD 381 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSC----------------EEEEETTTCCEEEEECS--TTSCSSCEEEEEECSSEEEEEETT
T ss_pred ccEEEEEEeCCEEEEEeCCCe----------------EEEEECCCCcEEEEEcc--CCCCCCCEEEEEECCCEEEEEeCC
Confidence 111222334556777776655 77888866543322211 011122233444567777777753
Q ss_pred cccCCccccccccCCcEEEEECCCCcEEE
Q 005655 317 DMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 317 ~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
..|.+||+.+.....
T Consensus 382 --------------g~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 382 --------------GTVKLWDLKTGEFIR 396 (445)
T ss_dssp --------------SEEEEEETTTCCEEE
T ss_pred --------------CeEEEEECCCCceee
Confidence 359999998876543
No 86
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.56 E-value=2 Score=49.22 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=68.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCCC---CC---cceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P---~~---R~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++.||+... .+.|+++|..+. .|+.-...... .. ....+.++.++.||+...
T Consensus 66 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---------- 125 (668)
T 1kv9_A 66 DGVIYTSMS----------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---------- 125 (668)
T ss_dssp TTEEEEEEG----------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC----------
Confidence 788888654 246899998877 48854321100 00 011234556788887542
Q ss_pred cccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc--eEEec
Q 005655 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (685)
-..++.||..|++ |+.-............+.++.++.||+..+.... .....|+.||+.+.+ |+.-.
T Consensus 126 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 --DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY----GVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp --TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEES
T ss_pred --CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc----CCCCEEEEEECCCCcEEEEecc
Confidence 1468999998875 8864421111122223445678888874332111 124579999998765 87643
No 87
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=95.54 E-value=0.6 Score=46.82 Aligned_cols=211 Identities=7% Similarity=-0.090 Sum_probs=108.1
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
....+.+..|. ++.||+++.. .+.|++||+.+. .+.+... . ..-++++.. ++.||+....
T Consensus 28 ~~~eg~~~d~~-g~~l~~~~~~---------~~~i~~~~~~~~-~~~~~~~---~-~~~~~l~~~~dg~l~v~~~~---- 88 (296)
T 3e5z_A 28 TWTEGPVYVPA-RSAVIFSDVR---------QNRTWAWSDDGQ-LSPEMHP---S-HHQNGHCLNKQGHLIACSHG---- 88 (296)
T ss_dssp SSEEEEEEEGG-GTEEEEEEGG---------GTEEEEEETTSC-EEEEESS---C-SSEEEEEECTTCCEEEEETT----
T ss_pred ccccCCeEeCC-CCEEEEEeCC---------CCEEEEEECCCC-eEEEECC---C-CCcceeeECCCCcEEEEecC----
Confidence 34566777763 2458887752 246899999988 6666432 1 122334443 5778876531
Q ss_pred CCccccccCeEEEEECCCCcEEEcccC--CCCCCCccceEEEECCEEEEE----ccccCC----CCceeeeceEEEEEcC
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLK--GCPSPRSGHRMVLYKHKIIVF----GGFYDT----LREVRYYNDLYVFDLD 217 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~--g~P~~Rsgh~~v~~~~~lyv~----GG~~~~----~~~~~~~~dv~~yD~~ 217 (685)
...+++||+.++....+... +.+..+....++.-++.||+. |..... .........||+|++.
T Consensus 89 -------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 89 -------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp -------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred -------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 24689999988888766431 111112222222236788886 432100 0000013479999987
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC-Ccee-EEeec-CCCC
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEW-SKVKK-IGMP 293 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W-~~~~~-~g~~ 293 (685)
.+...+... .. .-.+++.. ++.+++.+.... .+++|++. +.+. ..... ....
T Consensus 162 -g~~~~~~~~----~~---~~~gi~~s~dg~~lv~~~~~~----------------~i~~~~~~~~g~~~~~~~~~~~~~ 217 (296)
T 3e5z_A 162 -GTLSAPIRD----RV---KPNGLAFLPSGNLLVSDTGDN----------------ATHRYCLNARGETEYQGVHFTVEP 217 (296)
T ss_dssp -SCEEEEECC----CS---SEEEEEECTTSCEEEEETTTT----------------EEEEEEECSSSCEEEEEEEECCSS
T ss_pred -CCEEEeecC----CC---CCccEEECCCCCEEEEeCCCC----------------eEEEEEECCCCcCcCCCeEeeCCC
Confidence 555444322 01 11233333 455554443322 37788875 4444 21111 1100
Q ss_pred CCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 294 PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 294 P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
..| .++++- +++|||..+ +.|++||+.......+..
T Consensus 218 ~~p---~~i~~d~~G~l~v~~~----------------~~v~~~~~~g~~~~~~~~ 254 (296)
T 3e5z_A 218 GKT---DGLRVDAGGLIWASAG----------------DGVHVLTPDGDELGRVLT 254 (296)
T ss_dssp SCC---CSEEEBTTSCEEEEET----------------TEEEEECTTSCEEEEEEC
T ss_pred CCC---CeEEECCCCCEEEEcC----------------CeEEEECCCCCEEEEEEC
Confidence 111 124443 677877651 348999998665555543
No 88
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.54 E-value=0.31 Score=50.05 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=35.1
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEccc
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
.+|.+|+.++++..+.... ....-..+++. +++||+.+.... -..+++|++.++.++.+..
T Consensus 19 ~v~~~d~~tg~~~~~~~~~--~~~~p~~~a~spdg~l~~~~~~~~---------~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLA--ATQNPTYLALSAKDCLYSVDKEDD---------EGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEEEETTTTEEEEEEEEE--ECSCCCCEEECTTCEEEEEEEETT---------EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEcCCCCeEEEeeeee--ccCCcceEEEccCCeEEEEEecCC---------CceEEEEEecCCcEEEeee
Confidence 4778888888887643211 01111223333 567777654211 2568999998888776654
No 89
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.53 E-value=0.66 Score=48.31 Aligned_cols=190 Identities=9% Similarity=0.014 Sum_probs=92.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~ 150 (685)
++.+.| ++.+++.|+. + ..+.+||+.+++-...-... ...-.++++. +..+++.|+.+
T Consensus 132 ~v~~sp--dg~~l~sgs~--d-------~~i~iwd~~~~~~~~~~~~h---~~~V~~~~~~~~~~~~l~s~s~D------ 191 (344)
T 4gqb_B 132 TVSVLS--SGTQAVSGSK--D-------ICIKVWDLAQQVVLSSYRAH---AAQVTCVAASPHKDSVFLSCSED------ 191 (344)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC---SSCEEEEEECSSCTTEEEEEETT------
T ss_pred EEEECC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEcCc---CCceEEEEecCCCCCceeeeccc------
Confidence 344444 4566666662 2 35788898877543221111 1111122222 23577777753
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEE-ecc
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKP 226 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~ 226 (685)
+.+.+||+.+..-...-. .........++.+ ++.+++.|+.+ ..|.+||+.+.+-.. +..
T Consensus 192 -----~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~l~sg~~d---------g~v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 192 -----NRILLWDTRCPKPASQIG--CSAPGYLPTSLAWHPQQSEVFVFGDEN---------GTVSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp -----SCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETT---------SEEEEEESCC--CCEEEEC
T ss_pred -----cccccccccccceeeeee--cceeeccceeeeecCCCCcceEEeccC---------CcEEEEECCCCcEEEEEcC
Confidence 347788998776433211 1111111222333 45677777753 357888987654211 111
Q ss_pred CCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE
Q 005655 227 RFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~ 304 (685)
. ..+ -.+++.. +..+++.|+.++. +.+||..+.+-..+. + ....-.++++
T Consensus 256 h-----~~~--v~~v~fsp~g~~~lasgs~D~~----------------i~vwd~~~~~~~~~~--~---H~~~V~~v~~ 307 (344)
T 4gqb_B 256 H-----SQC--VTGLVFSPHSVPFLASLSEDCS----------------LAVLDSSLSELFRSQ--A---HRDFVRDATW 307 (344)
T ss_dssp C-----SSC--EEEEEECSSSSCCEEEEETTSC----------------EEEECTTCCEEEEEC--C---CSSCEEEEEE
T ss_pred C-----CCC--EEEEEEccCCCeEEEEEeCCCe----------------EEEEECCCCcEEEEc--C---CCCCEEEEEE
Confidence 1 111 1222222 3456777777655 778888776543321 1 1111233444
Q ss_pred E--CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 305 H--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 305 ~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
. +..+++-||.. ..|.+|++.+
T Consensus 308 sp~~~~llas~s~D--------------~~v~~w~v~~ 331 (344)
T 4gqb_B 308 SPLNHSLLTTVGWD--------------HQVVHHVVPT 331 (344)
T ss_dssp CSSSTTEEEEEETT--------------SCEEEEECCC
T ss_pred eCCCCeEEEEEcCC--------------CeEEEEECCC
Confidence 3 34566667653 2377777655
No 90
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.48 E-value=0.26 Score=51.51 Aligned_cols=193 Identities=9% Similarity=0.042 Sum_probs=96.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~ 150 (685)
++.+.| ++.+++.|+. + ..+.+||+.+.+-...-... ...-.++++. +..+++.||...
T Consensus 144 ~v~~sp--dg~~l~sgs~--d-------g~v~iwd~~~~~~~~~~~~h---~~~v~~v~~s~~~~~~~~s~~~dg----- 204 (357)
T 4g56_B 144 TLSVFS--DGTQAVSGGK--D-------FSVKVWDLSQKAVLKSYNAH---SSEVNCVAACPGKDTIFLSCGEDG----- 204 (357)
T ss_dssp EEEECS--SSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC---SSCEEEEEECTTCSSCEEEEETTS-----
T ss_pred EEEECC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEcCC---CCCEEEEEEccCCCceeeeeccCC-----
Confidence 344555 5667777762 2 35788999887654322211 1111222222 234677777532
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
.+.+||+.+..-..... .........++.+ ++.+++.|+.+ ..|.+||+.+..-...-..
T Consensus 205 ------~v~~wd~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d---------~~i~~wd~~~~~~~~~~~~ 267 (357)
T 4g56_B 205 ------RILLWDTRKPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDET---------GNVSLVNIKNPDSAQTSAV 267 (357)
T ss_dssp ------CEEECCTTSSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESS---------SCEEEEESSCGGGCEEECC
T ss_pred ------ceEEEECCCCceeeeee--eccccccccchhhhhcccceEEEeecc---------cceeEEECCCCcEeEEEec
Confidence 47778887665332211 1111122233333 35677777643 4578889876542221111
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--
Q 005655 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-- 305 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-- 305 (685)
. ..+....++...+..+++.|+.++. +.+||+.+.+..... + ....-.++++.
T Consensus 268 --~--~~~v~~l~~sp~~~~~lasgs~D~~----------------i~iwd~~~~~~~~~~--~---H~~~V~~vafsP~ 322 (357)
T 4g56_B 268 --H--SQNITGLAYSYHSSPFLASISEDCT----------------VAVLDADFSEVFRDL--S---HRDFVTGVAWSPL 322 (357)
T ss_dssp --C--SSCEEEEEECSSSSCCEEEEETTSC----------------EEEECTTSCEEEEEC--C---CSSCEEEEEECSS
T ss_pred --c--ceeEEEEEEcCCCCCEEEEEeCCCE----------------EEEEECCCCcEeEEC--C---CCCCEEEEEEeCC
Confidence 0 1111111111124467777777655 778888776544332 1 11112234443
Q ss_pred CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
++.+++.||.. ..|.+|++.+
T Consensus 323 d~~~l~s~s~D--------------g~v~iW~~~~ 343 (357)
T 4g56_B 323 DHSKFTTVGWD--------------HKVLHHHLPS 343 (357)
T ss_dssp STTEEEEEETT--------------SCEEEEECC-
T ss_pred CCCEEEEEcCC--------------CeEEEEECCC
Confidence 56777777764 2488888654
No 91
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.46 E-value=1.1 Score=45.73 Aligned_cols=162 Identities=9% Similarity=-0.015 Sum_probs=80.8
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.+.+|+..+..-...-.. ....-.+++.. ++.+++.|+.. ..+.+||+.++.-...-. .. .
T Consensus 145 ~v~i~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~lasg~~d-----------g~i~iwd~~~~~~~~~~~--~h--~ 206 (321)
T 3ow8_A 145 KVNIFGVESGKKEYSLDT---RGKFILSIAYSPDGKYLASGAID-----------GIINIFDIATGKLLHTLE--GH--A 206 (321)
T ss_dssp EEEEEETTTCSEEEEEEC---SSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CC--S
T ss_pred cEEEEEcCCCceeEEecC---CCceEEEEEECCCCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc--cc--C
Confidence 577788877654321111 11112222332 46677777653 348889998875432211 11 1
Q ss_pred ccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 181 sgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
..-..+.+ ++.+++.|+.+ ..|.+||+.+......-.. ....-.+++.. ++.+++.|+.++.
T Consensus 207 ~~v~~l~~spd~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~------h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 207 MPIRSLTFSPDSQLLVTASDD---------GYIKIYDVQHANLAGTLSG------HASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp SCCCEEEECTTSCEEEEECTT---------SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CceeEEEEcCCCCEEEEEcCC---------CeEEEEECCCcceeEEEcC------CCCceEEEEECCCCCEEEEEeCCCc
Confidence 11122333 56677777753 3588889877654332111 11111222333 5667788887665
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEeccee
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVV 316 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~ 316 (685)
+.++|+.+.+-...-. .....-.++++. ++..++.||..
T Consensus 272 ----------------v~iwd~~~~~~~~~~~----~h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 272 ----------------VKVWDVGTRTCVHTFF----DHQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp ----------------EEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred ----------------EEEEeCCCCEEEEEEc----CCCCcEEEEEECCCCCEEEEEeCC
Confidence 7788887654333211 111112233333 56666777653
No 92
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.44 E-value=0.66 Score=47.51 Aligned_cols=214 Identities=14% Similarity=0.144 Sum_probs=100.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~ 150 (685)
.+++.| +++||+.+.. + --+.+++|++.+.+++.+....... ..-+.+++. + ..||+.+..
T Consensus 44 ~~a~sp--dg~l~~~~~~---~----~~~~v~~~~~~~g~~~~~~~~~~~~-~~p~~~a~spdg~~l~~~~~~------- 106 (347)
T 3hfq_A 44 YLALSA--KDCLYSVDKE---D----DEGGIAAWQIDGQTAHKLNTVVAPG-TPPAYVAVDEARQLVYSANYH------- 106 (347)
T ss_dssp CEEECT--TCEEEEEEEE---T----TEEEEEEEEEETTEEEEEEEEEEES-CCCSEEEEETTTTEEEEEETT-------
T ss_pred eEEEcc--CCeEEEEEec---C----CCceEEEEEecCCcEEEeeeeecCC-CCCEEEEECCCCCEEEEEeCC-------
Confidence 356666 5667666531 1 1246899999888877665311111 111233333 3 457766531
Q ss_pred cccccCeEEEEECC-CCcEEEccc---CC-CCCCCc----cceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcC-CC
Q 005655 151 RFHHYKDFWMLDLK-TNQWEQLNL---KG-CPSPRS----GHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF 219 (685)
Q Consensus 151 ~~~~~~dv~~yD~~-t~~W~~~~~---~g-~P~~Rs----gh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~ 219 (685)
-+.+.+|++. +.....+.. .+ .|.+|. -|.+++. ++.||+.+.. .+.+++|++. +.
T Consensus 107 ----~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~---------~~~v~~~~~~~~g 173 (347)
T 3hfq_A 107 ----KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG---------SDKVYVYNVSDAG 173 (347)
T ss_dssp ----TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT---------TTEEEEEEECTTS
T ss_pred ----CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC---------CCEEEEEEECCCC
Confidence 1456777774 334433322 11 122221 2223322 5566665432 2468889887 55
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-CC-EEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCC-
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP- 296 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~- 296 (685)
....+..........|+ .++.. ++ .||+.+..... -.+|.++..+..+..+......|..
T Consensus 174 ~~~~~~~~~~~~g~~p~---~~~~spdg~~l~v~~~~~~~--------------v~v~~~~~~~g~~~~~~~~~~~~~~~ 236 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPR---HLVFSPDGQYAFLAGELSSQ--------------IASLKYDTQTGAFTQLGIVKTIPADY 236 (347)
T ss_dssp CEEEEEEEECCTTCCEE---EEEECTTSSEEEEEETTTTE--------------EEEEEEETTTTEEEEEEEEESSCTTC
T ss_pred cEEEeeeEEcCCCCCCc---eEEECCCCCEEEEEeCCCCE--------------EEEEEecCCCCceEEeeeeeecCCCC
Confidence 55544321100001121 23333 44 47776544322 1255556556777655432222221
Q ss_pred --ccee-EEEEE-CCe-EEEecceecccCCccccccccCCcEEEEECCCC-cEEEEE
Q 005655 297 --RAGF-SMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLE 347 (685)
Q Consensus 297 --R~g~-s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-~W~~l~ 347 (685)
..+. ++++. +++ ||+.+.. .+.|.+|++... .+..+.
T Consensus 237 ~~~~~~~~i~~spdG~~l~v~~~~--------------~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 237 TAHNGAAAIRLSHDGHFLYVSNRG--------------YNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp CSCCEEEEEEECTTSCEEEEEEET--------------TTEEEEEEECGGGCEEEEE
T ss_pred CCCCcceeEEECCCCCEEEEEeCC--------------CCEEEEEEECCCCcEEEeE
Confidence 1222 33333 454 6665432 245888887632 444443
No 93
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.43 E-value=0.7 Score=49.09 Aligned_cols=141 Identities=7% Similarity=-0.028 Sum_probs=70.7
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++.+.| ++.+++.|+. + ..+.+||..+......-... ...-.+++.. ++.+++.||.+.
T Consensus 113 ~~~~~p--~~~~l~s~s~--D-------g~i~vwd~~~~~~~~~l~~h---~~~V~~v~~~~~~~~l~sgs~D~------ 172 (410)
T 1vyh_C 113 RVIFHP--VFSVMVSASE--D-------ATIKVWDYETGDFERTLKGH---TDSVQDISFDHSGKLLASCSADM------ 172 (410)
T ss_dssp EEEECS--SSSEEEEEES--S-------SCEEEEETTTCCCCEEECCC---SSCEEEEEECTTSSEEEEEETTS------
T ss_pred EEEEcC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEecc---CCcEEEEEEcCCCCEEEEEeCCC------
Confidence 344555 4667777773 2 36888998877543221111 1111222222 466777787643
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
.+.+||+.+..-.. . +......-.++.+ ++.+++.||.+ ..|.+||+.+......-..
T Consensus 173 -----~i~iwd~~~~~~~~--~--~~~h~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~~~~~~~~~-- 232 (410)
T 1vyh_C 173 -----TIKLWDFQGFECIR--T--MHGHDHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYCVKTFTG-- 232 (410)
T ss_dssp -----CCCEEETTSSCEEE--C--CCCCSSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCEEEEEEC--
T ss_pred -----eEEEEeCCCCceeE--E--EcCCCCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEeC--
Confidence 35567776654322 1 1111111222333 45666777753 4688899887654322111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
. ...-..+... ++.+++.|+.++.
T Consensus 233 ---h-~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 233 ---H-REWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp ---C-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred ---C-CccEEEEEECCCCCEEEEEcCCCe
Confidence 0 1111122222 6677778877655
No 94
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.33 Score=49.89 Aligned_cols=199 Identities=12% Similarity=0.066 Sum_probs=91.3
Q ss_pred EEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCC--CcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 74 ~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
+...| ++.+++.|+. + ..+.+||+.. ..+..+.... ........+.+ ++.+++.||...
T Consensus 113 v~~sp--~g~~las~s~--D-------~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~---- 175 (330)
T 2hes_X 113 VAWSN--DGYYLATCSR--D-------KSVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPSEALLASSSYDD---- 175 (330)
T ss_dssp EEECT--TSCEEEEEET--T-------SCEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSSSSEEEEEETTS----
T ss_pred EEECC--CCCEEEEEeC--C-------CEEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCCCCEEEEEcCCC----
Confidence 44444 4556666652 2 3577888743 2343322111 01111222233 456777777533
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--C--CEEEEEccccCCCCceeeeceEEEEEcCC------C
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQ------F 219 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t------~ 219 (685)
.+.+||..+..|..+.......... ..+.+ + +.+++.||.+. .|.+||+.+ .
T Consensus 176 -------~i~iW~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~l~s~s~D~---------~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 176 -------TVRIWKDYDDDWECVAVLNGHEGTV--WSSDFDKTEGVFRLCSGSDDS---------TVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp -------CEEEEEEETTEEEEEEEECCCSSCE--EEEEECCSSSSCEEEEEETTS---------CEEEEEEEEECTTSCE
T ss_pred -------eEEEEECCCCCeeEEEEccCCCCcE--EEEEecCCCCeeEEEEEeCCC---------eEEEEEecCCCccccc
Confidence 3667777777776554411111111 12222 2 34555666432 344454432 2
Q ss_pred ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcce
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g 299 (685)
.|..+...+. .....-.+++...+.+++.||.++. +.+|+..+..|..+...........-
T Consensus 238 ~~~~~~~~~~---~h~~~v~~v~~s~~~~l~s~~~dg~----------------v~iw~~~~~~~~~~~~~~~~h~~~~v 298 (330)
T 2hes_X 238 EWVCEAILPD---VHKRQVYNVAWGFNGLIASVGADGV----------------LAVYEEVDGEWKVFAKRALCHGVYEI 298 (330)
T ss_dssp EEEEEEECCS---CCSSCEEEEEECTTSCEEEEETTSC----------------EEEEEEETTEEEEEEEESCTTTTSCE
T ss_pred eeEEeeeccc---ccccceEEEEEcCCCEEEEEeCCCE----------------EEEEEcCCCceEEEeccccccccceE
Confidence 4554443311 1112222333335557777877655 66777777778665432110111011
Q ss_pred eEEEEE---CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 300 FSMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 300 ~s~~~~---~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
.+++.. ++.+++.||..+ .|.+||+.+
T Consensus 299 ~~v~~~~~~~~~~las~s~Dg--------------~v~~W~~~~ 328 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGDDG--------------IVNFWSLEK 328 (330)
T ss_dssp EEEEEC-----CCEEEEETTS--------------EEEEEEC--
T ss_pred EEEEEecCCCceEEEEecCCC--------------cEEEEEecc
Confidence 222332 366777777542 377777653
No 95
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.35 E-value=1.5 Score=45.91 Aligned_cols=104 Identities=12% Similarity=-0.053 Sum_probs=55.6
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCE-EEEEecccCCCCcccCCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSE 266 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~ 266 (685)
++.+++.|+.. ..|.+||+.+..-...... .....-.+++.. ++. +++.|+..+.
T Consensus 258 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~g~~dg~--------- 314 (420)
T 3vl1_A 258 YGKYVIAGHVS---------GVITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDGNNANYIYAGYENGM--------- 314 (420)
T ss_dssp TTEEEEEEETT---------SCEEEEETTTCCEEEEECC-----TTSSCEEEEEECSSCTTEEEEEETTSE---------
T ss_pred CCCEEEEEcCC---------CeEEEEECCCCceeEEccc-----ccCCCceeEEEeCCCCCEEEEEeCCCe---------
Confidence 45666776643 3588999887653332221 111112223333 344 7777776654
Q ss_pred CCceeeeEEEEeCCCce--eEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 267 KGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 267 ~~~~~~dv~~yd~~t~~--W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
+.+||+.+.. -..+... ....-.+++...+.+++.||.. ..|.+|++.+
T Consensus 315 -------i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d--------------~~v~iw~~~~ 365 (420)
T 3vl1_A 315 -------LAQWDLRSPECPVGEFLIN----EGTPINNVYFAAGALFVSSGFD--------------TSIKLDIISD 365 (420)
T ss_dssp -------EEEEETTCTTSCSEEEEES----TTSCEEEEEEETTEEEEEETTT--------------EEEEEEEECC
T ss_pred -------EEEEEcCCCcCchhhhhcc----CCCCceEEEeCCCCEEEEecCC--------------ccEEEEeccC
Confidence 7788876642 2222210 1112233444578888888753 2478888665
No 96
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.32 E-value=0.48 Score=47.96 Aligned_cols=132 Identities=5% Similarity=-0.052 Sum_probs=70.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
.+.+|+.++. -+.|.+||+.+++........ .....+++. + ..||+.+.. -+.+
T Consensus 9 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~-----------~~~i 64 (331)
T 3u4y_A 9 SNFGIVVEQH---------LRRISFFSTDTLEILNQITLG----YDFVDTAITSDCSNVVVTSDF-----------CQTL 64 (331)
T ss_dssp CCEEEEEEGG---------GTEEEEEETTTCCEEEEEECC----CCEEEEEECSSSCEEEEEEST-----------TCEE
T ss_pred CCEEEEEecC---------CCeEEEEeCcccceeeeEEcc----CCcceEEEcCCCCEEEEEeCC-----------CCeE
Confidence 5778887762 247899999999886543321 111233332 3 457777652 2479
Q ss_pred EEEECCCCcE--EEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 159 WMLDLKTNQW--EQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 159 ~~yD~~t~~W--~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
++||+.++.. ..+.. ...+ .+++++. +++|| .+...+ -...|++||+.+.+....-..
T Consensus 65 ~~~d~~~~~~~~~~~~~--~~~~--~~~~~~s~dg~~l~-~~~~~~------~~~~i~v~d~~~~~~~~~~~~------- 126 (331)
T 3u4y_A 65 VQIETQLEPPKVVAIQE--GQSS--MADVDITPDDQFAV-TVTGLN------HPFNMQSYSFLKNKFISTIPI------- 126 (331)
T ss_dssp EEEECSSSSCEEEEEEE--CSSC--CCCEEECTTSSEEE-ECCCSS------SSCEEEEEETTTTEEEEEEEC-------
T ss_pred EEEECCCCceeEEeccc--CCCC--ccceEECCCCCEEE-EecCCC------CcccEEEEECCCCCeEEEEEC-------
Confidence 9999998874 22222 1222 2213333 34566 332110 012799999988876544322
Q ss_pred CccceeEEEe-CC-EEEEEecc
Q 005655 235 PRSGFQFFVY-QD-EVFLYGGY 254 (685)
Q Consensus 235 ~Rs~~s~~~~-~~-~Iyv~GG~ 254 (685)
...-+.++.. ++ .||+.+..
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEET
T ss_pred CCCccceEECCCCCEEEEEecC
Confidence 1112444444 33 57776543
No 97
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=95.29 E-value=1.8 Score=46.06 Aligned_cols=172 Identities=11% Similarity=0.080 Sum_probs=89.0
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
+.+++.|+. + +.+.+||+.+.+-...-.. ....-.+++.. ++..++.|+.. ..+.+
T Consensus 280 ~~~l~~~~~--d-------~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~d-----------g~i~v 336 (464)
T 3v7d_B 280 GNIVVSGSY--D-------NTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISASMD-----------TTIRI 336 (464)
T ss_dssp TTEEEEEET--T-------SCEEEEETTTTEEEEEECC---CSSCEEEEEEETTTTEEEEEETT-----------SCEEE
T ss_pred CCEEEEEeC--C-------CeEEEEECCCCcEEEEecC---CCCCEEEEEEcCCCCEEEEEeCC-----------CcEEE
Confidence 456666662 2 3688999987765432221 11122233333 45566666643 35888
Q ss_pred EECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 005655 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (685)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s 240 (685)
||+.+..-...- ......-.++.+.+..++.|+.+ ..|.+||+.+..-...... .......
T Consensus 337 wd~~~~~~~~~~----~~h~~~v~~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~------~~~~~~~ 397 (464)
T 3v7d_B 337 WDLENGELMYTL----QGHTALVGLLRLSDKFLVSAAAD---------GSIRGWDANDYSRKFSYHH------TNLSAIT 397 (464)
T ss_dssp EETTTTEEEEEE----CCCSSCEEEEEECSSEEEEEETT---------SEEEEEETTTCCEEEEEEC------TTCCCEE
T ss_pred EECCCCcEEEEE----eCCCCcEEEEEEcCCEEEEEeCC---------CcEEEEECCCCceeeeecC------CCCccEE
Confidence 999877533221 11222234455667777777753 3688899887653322211 1112222
Q ss_pred EEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecce
Q 005655 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (685)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (685)
+...++.+++.|+ .+. +.+||+.+..-...... +....-.+++..++.+++.|+.
T Consensus 398 ~~~~~~~~l~~~~-dg~----------------i~iwd~~~g~~~~~~~~---~~~~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 398 TFYVSDNILVSGS-ENQ----------------FNIYNLRSGKLVHANIL---KDADQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp EEEECSSEEEEEE-TTE----------------EEEEETTTCCEEESCTT---TTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEeCCCEEEEec-CCe----------------EEEEECCCCcEEehhhc---cCCCcEEEEEecCCEEEEEEEe
Confidence 3333666667666 333 78899888765442111 1222223444445555555554
No 98
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.28 E-value=0.85 Score=50.92 Aligned_cols=141 Identities=15% Similarity=0.121 Sum_probs=71.7
Q ss_pred CeEEEEECCCCcEEE-cccCCC--------CCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 156 KDFWMLDLKTNQWEQ-LNLKGC--------PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~-~~~~g~--------P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
+.+.+||..+.+-.. +...++ |.+|..+..+.. +..+|+-... .+.|+++|..+..-..+.
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~---------~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---------TGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT---------TTEEEEEECTTSSSCEEE
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC---------CCeEEEEEecCCCcceeE
Confidence 467888988876433 222111 222332222222 3455544321 367899998765432222
Q ss_pred cCCCCCCCCCccceeEEEe-CC-EEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEE
Q 005655 226 PRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (685)
Q Consensus 226 ~~~~~~~P~~Rs~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~ 303 (685)
.. +..+.-+.++.. ++ .+|+.+..+. .+.++|+.+.+-...-..+..|.+..+...
T Consensus 319 ~i-----~~~~~~~~~~~spdg~~l~va~~~~~----------------~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 319 SI-----GAAPFLHDGGWDSSHRYFMTAANNSN----------------KVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp EE-----ECCSSCCCEEECTTSCEEEEEEGGGT----------------EEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred Ee-----ccCcCccCceECCCCCEEEEEecCCC----------------eEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 22 122223334443 33 4555443332 377799988876655444444554444443
Q ss_pred EE--CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 304 VH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 304 ~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
+. .+.+|+.+...+ +.|-+||+.+
T Consensus 377 ~~p~~g~~~~s~~~~d-------------~~V~v~d~~~ 402 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGD-------------GSISLIGTDP 402 (543)
T ss_dssp EETTTEEEEEEEBSSS-------------SEEEEEECCT
T ss_pred CCCCCccEEEeccCCC-------------ceEEEEEeCC
Confidence 34 367777664321 4588888876
No 99
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.27 E-value=1.5 Score=45.13 Aligned_cols=62 Identities=5% Similarity=0.037 Sum_probs=30.8
Q ss_pred EEEEeCCCceeEEeecCCCCCCCccee-EEEEE-CCe-EEEecceecccCCccccccccCCcEEEEEC--CCCcEEEEEe
Q 005655 274 LWSLDPRTWEWSKVKKIGMPPGPRAGF-SMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQL--DNHRWYPLEL 348 (685)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~P~~R~g~-s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~--~t~~W~~l~~ 348 (685)
+.+|++.+..+..+......|....+. .+++. +++ ||+.+ ... .+.|.+|++ .+..+..+..
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~-~~~------------~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-RLK------------ADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE-CSS------------SCEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC-CCC------------CCEEEEEEEcCCCCcEEEeeE
Confidence 667777677776554432223222222 33333 454 54433 210 134666666 4667766554
No 100
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.26 E-value=0.43 Score=55.15 Aligned_cols=195 Identities=10% Similarity=-0.016 Sum_probs=96.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.++++||. + +.+.+||..++.....-... ...-.+++.. ++..+++|+..
T Consensus 59 ~~~~~s~--~~~~l~~~~~--d-------g~i~vw~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d------ 118 (814)
T 3mkq_A 59 RAGKFIA--RKNWIIVGSD--D-------FRIRVFNYNTGEKVVDFEAH---PDYIRSIAVHPTKPYVLSGSDD------ 118 (814)
T ss_dssp EEEEEEG--GGTEEEEEET--T-------SEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSEEEEEETT------
T ss_pred EEEEEeC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEecC---CCCEEEEEEeCCCCEEEEEcCC------
Confidence 3455555 5667777763 2 36889999888765332211 1112222332 35555666542
Q ss_pred cccccCeEEEEECCCC-cEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 151 RFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~-~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
..+.+||+.++ .....-. .. ...-.+++.. ++.+++.|+.+ ..|.+||+.+..-......
T Consensus 119 -----g~i~vw~~~~~~~~~~~~~--~~-~~~v~~~~~~p~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~ 181 (814)
T 3mkq_A 119 -----LTVKLWNWENNWALEQTFE--GH-EHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT 181 (814)
T ss_dssp -----SEEEEEEGGGTSEEEEEEE--CC-SSCEEEEEEETTEEEEEEEEETT---------SEEEEEETTCSSCSEEEEC
T ss_pred -----CEEEEEECCCCceEEEEEc--CC-CCcEEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcceeEEec
Confidence 35778888765 3322211 11 1111222222 35677777753 4688888865443222211
Q ss_pred CCCCCCCCccceeEEEe---CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE
Q 005655 228 FGSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~ 304 (685)
.....-..++.. ++.+++.|+..+. +.+||+.+..-...-.. ....-.++++
T Consensus 182 -----~~~~~v~~~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~----~~~~v~~~~~ 236 (814)
T 3mkq_A 182 -----GQERGVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLEG----HMSNVSFAVF 236 (814)
T ss_dssp -----CCTTCCCEEEECCSTTCCEEEEECTTSE----------------EEEEETTTTEEEEEEEC----CSSCEEEEEE
T ss_pred -----CCCCCEEEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCcEEEEEcC----CCCCEEEEEE
Confidence 111111222222 5667777776544 77888776653332211 1111223333
Q ss_pred E-CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 305 H-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 305 ~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
. ++.+++.|+.. ..|.+||+.+.+
T Consensus 237 ~~~~~~l~~~~~d--------------g~v~vwd~~~~~ 261 (814)
T 3mkq_A 237 HPTLPIIISGSED--------------GTLKIWNSSTYK 261 (814)
T ss_dssp CSSSSEEEEEETT--------------SCEEEEETTTCS
T ss_pred cCCCCEEEEEeCC--------------CeEEEEECCCCc
Confidence 3 55667777653 237777776644
No 101
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.19 E-value=1.5 Score=44.81 Aligned_cols=173 Identities=9% Similarity=0.040 Sum_probs=90.0
Q ss_pred cEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+.+||+.+.+-. .+.... . ...+++.. ++.+++.|+.. ..+.+||+.+..-...-. ...
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~~g~~d-----------g~v~i~~~~~~~~~~~~~---~~~ 164 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGP--V--DAWTLAFSPDSQYLATGTHV-----------GKVNIFGVESGKKEYSLD---TRG 164 (321)
T ss_dssp EEEEEETTTTEEEEEEECCT--T--CCCCEEECTTSSEEEEECTT-----------SEEEEEETTTCSEEEEEE---CSS
T ss_pred cEEEEECCCCCEEEEEeCCC--c--cEEEEEECCCCCEEEEEcCC-----------CcEEEEEcCCCceeEEec---CCC
Confidence 5778888877543 222211 1 11223333 45667777642 457788887765432211 111
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccC
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~ 256 (685)
.. ...+.+ ++.+++.|+.+ ..|.+||+.+.+-...-.. . ..+ -.+++.. ++.+++.|+..+
T Consensus 165 ~~-v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~~~~~~~~~--h--~~~--v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 165 KF-ILSIAYSPDGKYLASGAID---------GIINIFDIATGKLLHTLEG--H--AMP--IRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp SC-EEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC--C--SSC--CCEEEECTTSCEEEEECTTS
T ss_pred ce-EEEEEECCCCCEEEEEcCC---------CeEEEEECCCCcEEEEEcc--c--CCc--eeEEEEcCCCCEEEEEcCCC
Confidence 11 122233 56677777753 3588899987653322111 0 111 1123333 667888888766
Q ss_pred CCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEE
Q 005655 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (685)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~ 335 (685)
. +.+||+.+......-. + ....-.++++. ++..++.|+.. ..|.+
T Consensus 229 ~----------------i~iwd~~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~D--------------~~v~i 274 (321)
T 3ow8_A 229 Y----------------IKIYDVQHANLAGTLS-G---HASWVLNVAFCPDDTHFVSSSSD--------------KSVKV 274 (321)
T ss_dssp C----------------EEEEETTTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT--------------SCEEE
T ss_pred e----------------EEEEECCCcceeEEEc-C---CCCceEEEEECCCCCEEEEEeCC--------------CcEEE
Confidence 5 7788887655433221 0 11112233333 56677777653 34899
Q ss_pred EECCCCc
Q 005655 336 FQLDNHR 342 (685)
Q Consensus 336 yd~~t~~ 342 (685)
||+.+..
T Consensus 275 wd~~~~~ 281 (321)
T 3ow8_A 275 WDVGTRT 281 (321)
T ss_dssp EETTTTE
T ss_pred EeCCCCE
Confidence 9987653
No 102
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.16 E-value=0.44 Score=55.08 Aligned_cols=151 Identities=8% Similarity=-0.010 Sum_probs=79.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
.++...| ++.++++|+. + +.+.+||..++.....-... ...-.+++.. ++..+++||..
T Consensus 17 ~~i~~sp--~~~~la~~~~--~-------g~v~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d------ 76 (814)
T 3mkq_A 17 KGIDFHP--TEPWVLTTLY--S-------GRVEIWNYETQVEVRSIQVT---ETPVRAGKFIARKNWIIVGSDD------ 76 (814)
T ss_dssp EEEEECS--SSSEEEEEET--T-------SEEEEEETTTTEEEEEEECC---SSCEEEEEEEGGGTEEEEEETT------
T ss_pred EEEEECC--CCCEEEEEeC--C-------CEEEEEECCCCceEEEEecC---CCcEEEEEEeCCCCEEEEEeCC------
Confidence 3455666 5677777762 2 36889998887654322211 1112223333 45666777642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC-ceEEeccC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPR 227 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~~~ 227 (685)
..+.+||+.++.....-. .. ...-..+.+ ++..++.|+.+ ..+.+||+.+. .....-..
T Consensus 77 -----g~i~vw~~~~~~~~~~~~--~~--~~~v~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 77 -----FRIRVFNYNTGEKVVDFE--AH--PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp -----SEEEEEETTTCCEEEEEE--CC--SSCEEEEEECSSSSEEEEEETT---------SEEEEEEGGGTSEEEEEEEC
T ss_pred -----CeEEEEECCCCcEEEEEe--cC--CCCEEEEEEeCCCCEEEEEcCC---------CEEEEEECCCCceEEEEEcC
Confidence 458899998887644322 11 111222333 45556666642 36788888765 22222111
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
....-.+++.. ++.+++.|+.++. +.+||+.+.
T Consensus 139 ------~~~~v~~~~~~p~~~~~l~~~~~dg~----------------v~vwd~~~~ 173 (814)
T 3mkq_A 139 ------HEHFVMCVAFNPKDPSTFASGCLDRT----------------VKVWSLGQS 173 (814)
T ss_dssp ------CSSCEEEEEEETTEEEEEEEEETTSE----------------EEEEETTCS
T ss_pred ------CCCcEEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCC
Confidence 11111222333 4567777776654 777887544
No 103
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.15 E-value=0.77 Score=46.26 Aligned_cols=119 Identities=8% Similarity=0.048 Sum_probs=56.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC--CCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~ 147 (685)
.++++.|. +..||+.+.. . +.+.+|++. ++++..+.....+. .-+.++.. + ..||+.+..
T Consensus 41 ~~~~~spd-g~~l~~~~~~---~------~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~---- 104 (343)
T 1ri6_A 41 QPMVVSPD-KRYLYVGVRP---E------FRVLAYRIAPDDGALTFAAESALPG--SLTHISTDHQGQFVFVGSYN---- 104 (343)
T ss_dssp CCEEECTT-SSEEEEEETT---T------TEEEEEEECTTTCCEEEEEEEECSS--CCSEEEECTTSSEEEEEETT----
T ss_pred ceEEECCC-CCEEEEeecC---C------CeEEEEEecCCCCceeeccccccCC--CCcEEEEcCCCCEEEEEecC----
Confidence 34566662 3445554431 1 356777776 77777554322111 22333333 3 456665532
Q ss_pred CCccccccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCC-CceEE
Q 005655 148 NQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQE 223 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~ 223 (685)
-+.+.+||+.+.. ...+.. .+....-+.+++. +++||+.+.. ...+.+||+.+ .+...
T Consensus 105 -------~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 105 -------AGNVSVTRLEDGLPVGVVDV--VEGLDGCHSANISPDNRTLWVPALK---------QDRICLFTVSDDGHLVA 166 (343)
T ss_dssp -------TTEEEEEEEETTEEEEEEEE--ECCCTTBCCCEECTTSSEEEEEEGG---------GTEEEEEEECTTSCEEE
T ss_pred -------CCeEEEEECCCCcccccccc--ccCCCCceEEEECCCCCEEEEecCC---------CCEEEEEEecCCCceee
Confidence 1347777773222 222222 1111122333333 3467665422 24688999887 66654
Q ss_pred e
Q 005655 224 I 224 (685)
Q Consensus 224 v 224 (685)
+
T Consensus 167 ~ 167 (343)
T 1ri6_A 167 Q 167 (343)
T ss_dssp E
T ss_pred e
Confidence 3
No 104
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.14 E-value=0.86 Score=51.46 Aligned_cols=206 Identities=8% Similarity=-0.099 Sum_probs=102.6
Q ss_pred ccEEEEEcC--C-CcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCC------CcEE
Q 005655 101 GDLYRYDVE--K-QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT------NQWE 169 (685)
Q Consensus 101 ndv~~yd~~--~-~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t------~~W~ 169 (685)
..||.+++. . .....++.............+++ +++.++++........ .......+|++|+.+ ....
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG-PSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS-TTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC-CCCceeEEEEEECCCCccccCCcee
Confidence 468999987 4 66666654211001112222222 4554445443211000 011246899999998 6766
Q ss_pred Ecc-cCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcC-CC---ceEEeccCCCCCCCCCccceeEE
Q 005655 170 QLN-LKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF---KWQEIKPRFGSMWPSPRSGFQFF 242 (685)
Q Consensus 170 ~~~-~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~---~W~~v~~~~~~~~P~~Rs~~s~~ 242 (685)
.+. . .+ . ....+.+ +++.+++......... -....||++|+. +. ....+... . ...-.+.+
T Consensus 181 ~l~~~--~~--~-~~~~~~~SpDG~~la~~~~~~~~~~-~~~~~i~~~d~~~~g~~~~~~~l~~~-----~-~~~~~~~~ 248 (662)
T 3azo_A 181 ELSDD--AH--R-FVTGPRLSPDGRQAVWLAWDHPRMP-WEGTELKTARVTEDGRFADTRTLLGG-----P-EEAIAQAE 248 (662)
T ss_dssp ESSCS--CS--S-EECCCEECTTSSEEEEEEECTTCCT-TTCEEEEEEEECTTSCEEEEEEEEEE-----T-TBCEEEEE
T ss_pred EEEec--CC--C-cccCceECCCCCEEEEEECCCCCCC-CCCcEEEEEEECCCCcccccEEeCCC-----C-CceEcceE
Confidence 665 3 11 1 1112223 5555555443321100 012579999998 56 44444321 0 11122333
Q ss_pred Ee-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC---CCCCcc-eeEEEEE-CCeEEEeccee
Q 005655 243 VY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM---PPGPRA-GFSMCVH-KKRALLFGGVV 316 (685)
Q Consensus 243 ~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~---~P~~R~-g~s~~~~-~~~iyvfGG~~ 316 (685)
.. ++.||+.+...+. ..+|.+|+.+..|..+..... .|.-.. ..++++. ++++|+.+..
T Consensus 249 ~spdg~l~~~~~~~~~--------------~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~- 313 (662)
T 3azo_A 249 WAPDGSLIVATDRTGW--------------WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK- 313 (662)
T ss_dssp ECTTSCEEEEECTTSS--------------CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred ECCCCeEEEEECCCCC--------------eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence 33 5667776654321 259999998888887754211 111111 1234444 6777766544
Q ss_pred cccCCccccccccCCcEEEEECCCCcEEEE
Q 005655 317 DMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (685)
Q Consensus 317 ~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (685)
+ ...||.+|+.+.....+
T Consensus 314 ~------------~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 314 G------------AAVLGILDPESGELVDA 331 (662)
T ss_dssp S------------SCEEEEEETTTTEEEEC
T ss_pred C------------ccEEEEEECCCCcEEEe
Confidence 3 35688888877665443
No 105
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.12 E-value=1.3 Score=43.30 Aligned_cols=180 Identities=8% Similarity=0.022 Sum_probs=92.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
+++++.+ ++.|||... + +.+++||+.......+.... ...-+++++. ++.|||....
T Consensus 70 ~~i~~~~--~g~l~v~~~---~-------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~------- 127 (270)
T 1rwi_B 70 QGLAVDG--AGTVYVTDF---N-------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG------- 127 (270)
T ss_dssp CCEEECT--TCCEEEEET---T-------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG-------
T ss_pred ceeEECC--CCCEEEEcC---C-------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC-------
Confidence 3455554 456776543 1 35888998877655443221 1222344444 5678887542
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
.+.+++|+..+.........+. ..-+++++. ++.||+.... .+.|.+||+.+..-......
T Consensus 128 ----~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~~-- 189 (270)
T 1rwi_B 128 ----NNRVVKLAAGSKTQTVLPFTGL---NDPDGVAVDNSGNVYVTDTD---------NNRVVKLEAESNNQVVLPFT-- 189 (270)
T ss_dssp ----GTEEEEECTTCCSCEECCCCSC---CSCCCEEECTTCCEEEEEGG---------GTEEEEECTTTCCEEECCCS--
T ss_pred ----CCEEEEEECCCceeEeeccccC---CCceeEEEeCCCCEEEEECC---------CCEEEEEecCCCceEeeccc--
Confidence 2458888776665544322111 112234443 5678886542 24688999887654332221
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~ 307 (685)
.. ..-.+++.. ++.||+....... +++|++.+..-...... ....-.++++. ++
T Consensus 190 ---~~-~~p~~i~~d~~g~l~v~~~~~~~----------------v~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 190 ---DI-TAPWGIAVDEAGTVYVTEHNTNQ----------------VVKLLAGSTTSTVLPFT----GLNTPLAVAVDSDR 245 (270)
T ss_dssp ---SC-CSEEEEEECTTCCEEEEETTTSC----------------EEEECTTCSCCEECCCC----SCSCEEEEEECTTC
T ss_pred ---CC-CCceEEEECCCCCEEEEECCCCc----------------EEEEcCCCCcceeeccC----CCCCceeEEECCCC
Confidence 11 122234444 5578877644332 78888876543332111 11222344443 56
Q ss_pred eEEEecce
Q 005655 308 RALLFGGV 315 (685)
Q Consensus 308 ~iyvfGG~ 315 (685)
+||+....
T Consensus 246 ~l~v~~~~ 253 (270)
T 1rwi_B 246 TVYVADRG 253 (270)
T ss_dssp CEEEEEGG
T ss_pred CEEEEECC
Confidence 78777543
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.10 E-value=1.1 Score=47.60 Aligned_cols=170 Identities=13% Similarity=0.129 Sum_probs=88.6
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEc-ccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~-~~~g~P~~R 180 (685)
.+.+||+.+.+....-.. ......++.+.+.+++.|+.. ..+.+||+.+..-... .. .....
T Consensus 194 ~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~--~~~~~ 256 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLIH----HCEAVLHLRFNNGMMVTCSKD-----------RSIAVWDMASPTDITLRRV--LVGHR 256 (435)
T ss_dssp CEEEEESSSCCEEEEECC----CCSCEEEEECCTTEEEEEETT-----------SCEEEEECSSSSCCEEEEE--ECCCS
T ss_pred eEEEEECCCCcEEEEEcC----CCCcEEEEEEcCCEEEEeeCC-----------CcEEEEeCCCCCCceeeeE--ecCCC
Confidence 578888887765432221 111223333455566677643 3577888876542211 11 11112
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCc
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~ 260 (685)
....++.+++.+++.|+.+ ..+.+||+.+..-...-.. .......+..++.+++.|+.++.
T Consensus 257 ~~v~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~l~~g~~dg~--- 317 (435)
T 1p22_A 257 AAVNVVDFDDKYIVSASGD---------RTIKVWNTSTCEFVRTLNG-------HKRGIACLQYRDRLVVSGSSDNT--- 317 (435)
T ss_dssp SCEEEEEEETTEEEEEETT---------SEEEEEETTTCCEEEEEEC-------CSSCEEEEEEETTEEEEEETTSC---
T ss_pred CcEEEEEeCCCEEEEEeCC---------CeEEEEECCcCcEEEEEcC-------CCCcEEEEEeCCCEEEEEeCCCe---
Confidence 2223344466666666642 4688899887653322111 11112233335667788887665
Q ss_pred ccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
+.+||+.+..-...-. .......++.+++..++.|+.. ..|.+||+.
T Consensus 318 -------------i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~l~sg~~d--------------g~i~vwd~~ 364 (435)
T 1p22_A 318 -------------IRLWDIECGACLRVLE-----GHEELVRCIRFDNKRIVSGAYD--------------GKIKVWDLV 364 (435)
T ss_dssp -------------EEEEETTTCCEEEEEC-----CCSSCEEEEECCSSEEEEEETT--------------SCEEEEEHH
T ss_pred -------------EEEEECCCCCEEEEEe-----CCcCcEEEEEecCCEEEEEeCC--------------CcEEEEECC
Confidence 7788887654332211 1111223334477778887753 348888864
No 107
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.09 E-value=2 Score=44.80 Aligned_cols=105 Identities=8% Similarity=0.052 Sum_probs=55.5
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~ 159 (685)
++.++++|+. + +.+.+||+.+..-...-.. ....-.+++.. ++.+++.|+.. ..+.
T Consensus 108 ~~~~l~~~~~--d-------g~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d-----------~~i~ 164 (420)
T 3vl1_A 108 QMRRFILGTT--E-------GDIKVLDSNFNLQREIDQA---HVSEITKLKFFPSGEALISSSQD-----------MQLK 164 (420)
T ss_dssp SSCEEEEEET--T-------SCEEEECTTSCEEEEETTS---SSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred CCCEEEEEEC--C-------CCEEEEeCCCcceeeeccc---ccCccEEEEECCCCCEEEEEeCC-----------CeEE
Confidence 4667777762 2 3688889887765544221 12222333333 45566666642 3588
Q ss_pred EEECCCCcEEE-cccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 160 MLDLKTNQWEQ-LNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 160 ~yD~~t~~W~~-~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
+||+.+..-.. +.. . ...-.+++.. ++.+++.|+.+ ..|.+||+.+.+-
T Consensus 165 iwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 165 IWSVKDGSNPRTLIG---H-RATVTDIAIIDRGRNVLSASLD---------GTIRLWECGTGTT 215 (420)
T ss_dssp EEETTTCCCCEEEEC---C-SSCEEEEEEETTTTEEEEEETT---------SCEEEEETTTTEE
T ss_pred EEeCCCCcCceEEcC---C-CCcEEEEEEcCCCCEEEEEcCC---------CcEEEeECCCCce
Confidence 89987654211 111 1 1111122222 45666667653 3578888877653
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.02 E-value=0.42 Score=50.31 Aligned_cols=204 Identities=10% Similarity=-0.004 Sum_probs=97.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE--------EecCCCCCCCcceeEEEEEC-C-EEEEEcC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK--------VISSPNSPPPRSAHQAVSWK-N-YLYIFGG 142 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~--------~l~s~~~P~~R~~ha~v~~~-~-~iyvfGG 142 (685)
++...|. ++.+++.|+. + ..+.+||+.++.+. .+.. ....-.+++... + .+++.|+
T Consensus 86 ~~~~~p~-~~~~l~s~s~--d-------g~v~vw~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 86 DIAWCPH-NDNVIASGSE--D-------CTVMVWEIPDGGLVLPLREPVITLEG----HTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp EEEECTT-CTTEEEEEET--T-------SEEEEEECCTTCCSSCBCSCSEEEEC----CSSCEEEEEECSSBTTEEEEEE
T ss_pred EEEeCCC-CCCEEEEEeC--C-------CeEEEEEccCCCCccccCCceEEecC----CCCeEEEEEECcCCCCEEEEEc
Confidence 3444442 3556666662 2 35788888876431 1111 111112233332 2 4777776
Q ss_pred ccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
.. ..+.+||+.+......-. .........++.+ ++.+++.|+.+ ..|.+||+.+..
T Consensus 152 ~d-----------g~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~ 209 (402)
T 2aq5_A 152 CD-----------NVILVWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD---------KRVRVIEPRKGT 209 (402)
T ss_dssp TT-----------SCEEEEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT---------SEEEEEETTTTE
T ss_pred CC-----------CEEEEEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC---------CcEEEEeCCCCc
Confidence 43 358899998886543321 0011111223333 56667777642 468999998866
Q ss_pred eEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCcee--EEeecCCCCCCCc
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW--SKVKKIGMPPGPR 297 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W--~~~~~~g~~P~~R 297 (685)
-...-... ........++.. ++.+++.|.... ....+.+||+.+..- ..... +...
T Consensus 210 ~~~~~~~~----~~~~~~~~~~~~~~~~~l~~g~~~~-------------~d~~i~iwd~~~~~~~~~~~~~----~~~~ 268 (402)
T 2aq5_A 210 VVAEKDRP----HEGTRPVHAVFVSEGKILTTGFSRM-------------SERQVALWDTKHLEEPLSLQEL----DTSS 268 (402)
T ss_dssp EEEEEECS----SCSSSCCEEEECSTTEEEEEEECTT-------------CCEEEEEEETTBCSSCSEEEEC----CCCS
T ss_pred eeeeeccC----CCCCcceEEEEcCCCcEEEEeccCC-------------CCceEEEEcCccccCCceEEec----cCCC
Confidence 44332110 111111223333 677776662111 113477888765331 11111 1111
Q ss_pred ceeEEEEE-C-CeEEEecceecccCCccccccccCCcEEEEECCCCc--EEEEE
Q 005655 298 AGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLE 347 (685)
Q Consensus 298 ~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~~l~ 347 (685)
.-.++++. + ..+++.|+.. +.|.+||+.+.. ...+.
T Consensus 269 ~v~~~~~s~~~~~l~~~g~~d--------------g~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 269 GVLLPFFDPDTNIVYLCGKGD--------------SSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp SCEEEEEETTTTEEEEEETTC--------------SCEEEEEECSSTTCEEEEE
T ss_pred ceeEEEEcCCCCEEEEEEcCC--------------CeEEEEEecCCCcceEeec
Confidence 12334444 3 4455566432 348899988765 44444
No 109
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=94.96 E-value=2.6 Score=43.18 Aligned_cols=195 Identities=12% Similarity=0.044 Sum_probs=95.9
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.+++.||. + ..+.+||..+..-...-... ...-.+++.. ++.+++.||..
T Consensus 60 ~~~~s~--d~~~l~s~s~--D-------g~v~iWd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~d------- 118 (340)
T 1got_B 60 AMHWGT--DSRLLLSASQ--D-------GKLIIWDSYTTNKVHAIPLR---SSWVMTCAYAPSGNYVACGGLD------- 118 (340)
T ss_dssp EEEECT--TSSEEEEEET--T-------TEEEEEETTTCCEEEEEECS---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEeC--C-------CcEEEEECCCCCcceEeecC---CccEEEEEECCCCCEEEEEeCC-------
Confidence 344444 5677777773 2 35788898776543221111 1111222222 46677777753
Q ss_pred ccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 152 FHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
+.+.+||+.+.. ....................-++. ++.|+.+ ..|.+||+.+..-...-..
T Consensus 119 ----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d---------~~i~~wd~~~~~~~~~~~~-- 182 (340)
T 1got_B 119 ----NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD---------TTCALWDIETGQQTTTFTG-- 182 (340)
T ss_dssp ----CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT---------SCEEEEETTTTEEEEEECC--
T ss_pred ----CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC---------CcEEEEECCCCcEEEEEcC--
Confidence 357788877642 111111000111111111122455 4445532 4588899887654332111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~ 307 (685)
....-.+++.. ++.+++.|+..+. +.+||+.+..-...-. .....-.++++. ++
T Consensus 183 ----h~~~v~~~~~~~~~~~l~sg~~d~~----------------v~~wd~~~~~~~~~~~----~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 183 ----HTGDVMSLSLAPDTRLFVSGACDAS----------------AKLWDVREGMCRQTFT----GHESDINAICFFPNG 238 (340)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCSEEEEEC----CCSSCEEEEEECTTS
T ss_pred ----CCCceEEEEECCCCCEEEEEeCCCc----------------EEEEECCCCeeEEEEc----CCcCCEEEEEEcCCC
Confidence 11111223333 6678888887765 7778877654322211 011112233443 56
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.+++.|+.. ..|.+||+.+..
T Consensus 239 ~~l~s~s~d--------------~~v~iwd~~~~~ 259 (340)
T 1got_B 239 NAFATGSDD--------------ATCRLFDLRADQ 259 (340)
T ss_dssp SEEEEEETT--------------SCEEEEETTTTE
T ss_pred CEEEEEcCC--------------CcEEEEECCCCc
Confidence 777777653 348899987754
No 110
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.94 E-value=1.8 Score=49.06 Aligned_cols=126 Identities=10% Similarity=0.071 Sum_probs=68.7
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEc-CCC--cEEEecCCCC---CCCcc---eeEEEE--ECCE----E
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPPRS---AHQAVS--WKNY----L 137 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~-~~~--~W~~l~s~~~---P~~R~---~ha~v~--~~~~----i 137 (685)
+-++. ++.||+.+.. .+.|++||. .+. .|+.-..... |.+++ ..+.++ .++. |
T Consensus 57 tP~v~---~g~vyv~~~~---------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV 124 (599)
T 1w6s_A 57 APLVV---DGKMYIHTSF---------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALI 124 (599)
T ss_dssp CCEEE---TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEE
T ss_pred ccEEE---CCEEEEEeCC---------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEE
Confidence 34455 7888887651 246999999 776 5886433210 00111 123344 4566 7
Q ss_pred EEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEE
Q 005655 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFD 215 (685)
Q Consensus 138 yvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (685)
|+... -..++.||..|++ |+.-.....+......+-++.++.||+-.+... ......|+.||
T Consensus 125 ~v~t~------------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e----~g~~g~v~A~D 188 (599)
T 1w6s_A 125 LKTQL------------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAE----LGVRGYLTAYD 188 (599)
T ss_dssp EEECT------------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGG----GTCCCEEEEEE
T ss_pred EEEcC------------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccc----cCCCCeEEEEE
Confidence 77532 1468899998875 875322100001112233556888876433111 01235789999
Q ss_pred cCCCc--eEEecc
Q 005655 216 LDQFK--WQEIKP 226 (685)
Q Consensus 216 ~~t~~--W~~v~~ 226 (685)
..+.+ |+.-..
T Consensus 189 ~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 189 VKTGEQVWRAYAT 201 (599)
T ss_dssp TTTCCEEEEEESS
T ss_pred CCCCcEEEEEcCC
Confidence 98754 876543
No 111
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=94.90 E-value=1.2 Score=44.71 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=93.5
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc--EEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCe
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
.+.+++.|.. -+.++++|+.+++ |+.-... ....|.+++. ++.||+.+. +.
T Consensus 4 ~~~~lv~~~~---------~~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~pdG~ilvs~~-------------~~ 57 (276)
T 3no2_A 4 PQHLLVGGSG---------WNKIAIINKDTKEIVWEYPLEK----GWECNSVAATKAGEILFSYS-------------KG 57 (276)
T ss_dssp CCEEEEECTT---------CSEEEEEETTTTEEEEEEECCT----TCCCCEEEECTTSCEEEECB-------------SE
T ss_pred CCcEEEeeCC---------CCEEEEEECCCCeEEEEeCCCc----cCCCcCeEECCCCCEEEeCC-------------CC
Confidence 3678887762 2478899997774 7643221 1123444444 677877321 45
Q ss_pred EEEEECCCC--cEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCC-ceEEeccCCCCCCC
Q 005655 158 FWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPRFGSMWP 233 (685)
Q Consensus 158 v~~yD~~t~--~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~~~~~~~~P 233 (685)
++.||+ ++ .|+.-. +.....+++... ++.+++..+-. ...++.||+... .|+.. .......+
T Consensus 58 V~~~d~-~G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~--------~~~v~~vd~~Gk~l~~~~-~~~~~~~~ 123 (276)
T 3no2_A 58 AKMITR-DGRELWNIAA----PAGCEMQTARILPDGNALVAWCGH--------PSTILEVNMKGEVLSKTE-FETGIERP 123 (276)
T ss_dssp EEEECT-TSCEEEEEEC----CTTCEEEEEEECTTSCEEEEEEST--------TEEEEEECTTSCEEEEEE-ECCSCSSG
T ss_pred EEEECC-CCCEEEEEcC----CCCccccccEECCCCCEEEEecCC--------CCEEEEEeCCCCEEEEEe-ccCCCCcc
Confidence 888998 44 366432 111222333333 55555543310 135778887543 24432 11100001
Q ss_pred CCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC-ceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 234 ~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
...........++.+++.....+ .+.+||+.. ..|+.-.. ..| ++++.. ++.+||
T Consensus 124 ~~~~~~v~~~~~G~~lv~~~~~~----------------~v~~~d~~G~~~w~~~~~--~~~-----~~~~~~~~g~~~v 180 (276)
T 3no2_A 124 HAQFRQINKNKKGNYLVPLFATS----------------EVREIAPNGQLLNSVKLS--GTP-----FSSAFLDNGDCLV 180 (276)
T ss_dssp GGSCSCCEECTTSCEEEEETTTT----------------EEEEECTTSCEEEEEECS--SCC-----CEEEECTTSCEEE
T ss_pred cccccCceECCCCCEEEEecCCC----------------EEEEECCCCCEEEEEECC--CCc-----cceeEcCCCCEEE
Confidence 11111112223556665543332 278888863 35665432 111 234444 678887
Q ss_pred ecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
++... +.|+.||+.+.+.
T Consensus 181 ~~~~~--------------~~v~~~d~~tG~~ 198 (276)
T 3no2_A 181 ACGDA--------------HCFVQLNLESNRI 198 (276)
T ss_dssp ECBTT--------------SEEEEECTTTCCE
T ss_pred EeCCC--------------CeEEEEeCcCCcE
Confidence 76532 3499999996643
No 112
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.88 E-value=3.7 Score=45.66 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=56.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCe
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
++.+|+.+.. -+.|.++|+.+++.. .+.... .-|.+++. +..||+.+.- +.
T Consensus 148 ~~~~~vs~~~---------d~~V~v~D~~t~~~~~~i~~g~-----~~~~v~~spdg~~l~v~~~d------------~~ 201 (543)
T 1nir_A 148 PNLFSVTLRD---------AGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIGRD------------AR 201 (543)
T ss_dssp GGEEEEEEGG---------GTEEEEEETTTCCEEEEEECST-----TEEEEEECTTSCEEEEEETT------------SE
T ss_pred CCEEEEEEcC---------CCeEEEEECCCceEEEEEecCc-----ccceEEECCCCCEEEEECCC------------Ce
Confidence 5788887762 246888999988654 333221 14555444 3567766531 56
Q ss_pred EEEEEC--CCCcEEEcccCCCCCCCccceEEEE-----CCEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 158 FWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLY-----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 158 v~~yD~--~t~~W~~~~~~g~P~~Rsgh~~v~~-----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
+.+||+ .+.+-.. . .+....-+.+++. +++.++++++. .+.|.+||..+.+-.
T Consensus 202 V~v~D~~~~t~~~~~--~--i~~g~~p~~va~sp~~~~dg~~l~v~~~~--------~~~v~v~D~~t~~~~ 261 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA--E--IKIGIEARSVESSKFKGYEDRYTIAGAYW--------PPQFAIMDGETLEPK 261 (543)
T ss_dssp EEEEETTSSSCEEEE--E--EECCSEEEEEEECCSTTCTTTEEEEEEEE--------SSEEEEEETTTCCEE
T ss_pred EEEEECcCCCCcEEE--E--EecCCCcceEEeCCCcCCCCCEEEEEEcc--------CCeEEEEeccccccc
Confidence 899999 6654322 1 1222222223332 34444444432 356888898876543
No 113
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=94.87 E-value=2.7 Score=44.04 Aligned_cols=148 Identities=10% Similarity=0.043 Sum_probs=74.8
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
++.+++.|+.. ..+.+||+.+..-...-. ... ..-.+++.. ++..++.|+.+ ..+.
T Consensus 134 dg~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~--~h~-~~v~~~~~~p~~~~l~s~s~d---------~~v~ 190 (393)
T 1erj_A 134 DGKFLATGAED-----------RLIRIWDIENRKIVMILQ--GHE-QDIYSLDYFPSGDKLVSGSGD---------RTVR 190 (393)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS-SCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc--cCC-CCEEEEEEcCCCCEEEEecCC---------CcEE
Confidence 46677777753 358889998876543221 111 111122222 45555666643 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~ 290 (685)
+||+.+......-.. ... -.+++.. ++.+++.|+..+. +.+||+.+..-...-..
T Consensus 191 iwd~~~~~~~~~~~~-----~~~--v~~~~~~~~~~~~l~~~s~d~~----------------v~iwd~~~~~~~~~~~~ 247 (393)
T 1erj_A 191 IWDLRTGQCSLTLSI-----EDG--VTTVAVSPGDGKYIAAGSLDRA----------------VRVWDSETGFLVERLDS 247 (393)
T ss_dssp EEETTTTEEEEEEEC-----SSC--EEEEEECSTTCCEEEEEETTSC----------------EEEEETTTCCEEEEEC-
T ss_pred EEECCCCeeEEEEEc-----CCC--cEEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCcEEEeecc
Confidence 889988765433222 111 1222222 6778888887765 77788776543332211
Q ss_pred CCC---CCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 291 GMP---PGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 291 g~~---P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
... .....-.++++. +++.++.|+.. ..|.+||+.+.
T Consensus 248 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d--------------~~v~~wd~~~~ 288 (393)
T 1erj_A 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLD--------------RSVKLWNLQNA 288 (393)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETT--------------SEEEEEEC---
T ss_pred cccCCCCCCCCEEEEEECCCCCEEEEEeCC--------------CEEEEEECCCC
Confidence 000 001111233333 56677777653 34888887653
No 114
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=94.84 E-value=4 Score=41.67 Aligned_cols=121 Identities=8% Similarity=-0.031 Sum_probs=66.0
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEE-ECCEEEEEcCccCCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~-~~~~iyvfGG~~~s~~~ 149 (685)
+-+.+..|. ++.||+++.. .+.|++||+.++....+..+ ..-++++. -++.+||...
T Consensus 51 ~egp~~~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~-----~~v~~i~~~~dg~l~v~~~------- 108 (326)
T 2ghs_A 51 GEGPTFDPA-SGTAWWFNIL---------ERELHELHLASGRKTVHALP-----FMGSALAKISDSKQLIASD------- 108 (326)
T ss_dssp EEEEEEETT-TTEEEEEEGG---------GTEEEEEETTTTEEEEEECS-----SCEEEEEEEETTEEEEEET-------
T ss_pred CcCCeEeCC-CCEEEEEECC---------CCEEEEEECCCCcEEEEECC-----CcceEEEEeCCCeEEEEEC-------
Confidence 445566653 3677777642 24689999998877655432 11233333 3678877541
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
+.+++||+.++.+..+.......+......+.+ ++.||+. ...... ......||+|+ +.+...+
T Consensus 109 ------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~-~~~~~~--~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 109 ------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIG-TMGRKA--ETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp ------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEE-EEETTC--CTTCEEEEEEE--TTEEEEE
T ss_pred ------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEE-eCCCcC--CCCceEEEEEe--CCcEEEe
Confidence 348999999999887654211111111222223 5677763 321100 01235789998 4555544
No 115
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=94.83 E-value=1.4 Score=48.22 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=41.8
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
++.+|+|-| +.+|+||..++....-.-.++|. --++..+.+++|+|-| +..|+
T Consensus 158 ~~~~yfFkG-------------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG-----------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-------------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQG-----------NQFLR 210 (460)
T ss_dssp SSEEEEEET-------------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEET-----------TEEEE
T ss_pred CCeEEEEec-------------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEEC-----------CEEEE
Confidence 678899988 46899999988765433333342 3466667899999988 35678
Q ss_pred EEcCCC
Q 005655 214 FDLDQF 219 (685)
Q Consensus 214 yD~~t~ 219 (685)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887543
No 116
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.79 E-value=0.5 Score=49.25 Aligned_cols=149 Identities=12% Similarity=-0.014 Sum_probs=74.5
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeece
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYND 210 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~d 210 (685)
++.+++.|+.. ..+.+||+.++.-...-. ... ..-.++.+ ++.+++.||.+ ..
T Consensus 150 dg~~l~sgs~d-----------g~v~iwd~~~~~~~~~~~--~h~--~~v~~v~~s~~~~~~~~s~~~d---------g~ 205 (357)
T 4g56_B 150 DGTQAVSGGKD-----------FSVKVWDLSQKAVLKSYN--AHS--SEVNCVAACPGKDTIFLSCGED---------GR 205 (357)
T ss_dssp SSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS--SCEEEEEECTTCSSCEEEEETT---------SC
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc--CCC--CCEEEEEEccCCCceeeeeccC---------Cc
Confidence 46677777753 347788998876443221 111 11122223 23567777753 35
Q ss_pred EEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 211 LYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 211 v~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
|.+||+.+.+-....... .....-.+++.. ++.+++.|+..+. +.+||+.+..-...-
T Consensus 206 v~~wd~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~~~la~g~~d~~----------------i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 206 ILLWDTRKPKPATRIDFC----ASDTIPTSVTWHPEKDDTFACGDETGN----------------VSLVNIKNPDSAQTS 265 (357)
T ss_dssp EEECCTTSSSCBCBCCCT----TCCSCEEEEEECTTSTTEEEEEESSSC----------------EEEEESSCGGGCEEE
T ss_pred eEEEECCCCceeeeeeec----cccccccchhhhhcccceEEEeecccc----------------eeEEECCCCcEeEEE
Confidence 778888765432221110 111111222222 4667888877655 778887665322211
Q ss_pred cCCCCCCCcceeEEEEE-C-CeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 289 KIGMPPGPRAGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 289 ~~g~~P~~R~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
. .....-.++++. + +++++.|+.. ..|.+||+.+.+-.
T Consensus 266 ~----~~~~~v~~l~~sp~~~~~lasgs~D--------------~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 266 A----VHSQNITGLAYSYHSSPFLASISED--------------CTVAVLDADFSEVF 305 (357)
T ss_dssp C----CCSSCEEEEEECSSSSCCEEEEETT--------------SCEEEECTTSCEEE
T ss_pred e----ccceeEEEEEEcCCCCCEEEEEeCC--------------CEEEEEECCCCcEe
Confidence 1 011112233332 3 3566666543 34889998877543
No 117
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.79 E-value=0.74 Score=47.47 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=46.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+|.+|+.+.++..+.... .... +.+++. +..||+.+...... ..-.+|.++..++..+.+.. .+..
T Consensus 30 ~~~~~d~~~g~~~~~~~~~--~~~p-~~l~~spdg~~l~~~~~~~~~~------~~v~~~~~~~~~g~~~~~~~--~~~~ 98 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDAE--VANP-SYLIPSADGKFVYSVNEFSKDQ------AAVSAFAFDKEKGTLHLLNT--QKTM 98 (361)
T ss_dssp EEEEEETTTCCEEEEEEEE--CSCC-CSEEECTTSSEEEEEECCSSTT------CEEEEEEEETTTTEEEEEEE--EECS
T ss_pred EEEEEeCCCCCEEEeeccc--CCCC-ceEEECCCCCEEEEEEccCCCC------CcEEEEEEeCCCCcEEEeeE--eccC
Confidence 3566678888887665321 1111 122332 34577665431110 01235666776677777654 2211
Q ss_pred -CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 180 -RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 180 -Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
..-+.++.-+++||+.+ +. -..+.+|++..
T Consensus 99 ~~~p~~~~~dg~~l~~~~-~~--------~~~v~~~~~~~ 129 (361)
T 3scy_A 99 GADPCYLTTNGKNIVTAN-YS--------GGSITVFPIGQ 129 (361)
T ss_dssp SSCEEEEEECSSEEEEEE-TT--------TTEEEEEEBCT
T ss_pred CCCcEEEEECCCEEEEEE-CC--------CCEEEEEEeCC
Confidence 12222233233455543 21 24677888764
No 118
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.79 E-value=0.75 Score=46.36 Aligned_cols=135 Identities=12% Similarity=-0.006 Sum_probs=64.6
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCC
Q 005655 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (685)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (685)
.+.+||+.+......-. .... .-.++.+ ++.+++.||.+ ..+.+||+.+..-...-.. .
T Consensus 196 ~i~i~d~~~~~~~~~~~--~h~~--~v~~~~~s~~~~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~-----~- 256 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHI--GHTG--YLNTVTVSPDGSLCASGGKD---------GQAMLWDLNEGKHLYTLDG-----G- 256 (340)
T ss_dssp CEEEEETTTTEEEEEEC--CCSS--CEEEEEECTTSSEEEEEETT---------CEEEEEETTTTEEEEEEEC-----S-
T ss_pred EEEEEECCCCceeeEec--CCCC--cEEEEEECCCCCEEEEEeCC---------CeEEEEEeccCceeeeecC-----C-
Confidence 47788988776543321 1111 1122233 56677777753 3577888876543222111 1
Q ss_pred CccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCC-----CCcceeEEEEE-CCe
Q 005655 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP-----GPRAGFSMCVH-KKR 308 (685)
Q Consensus 235 ~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P-----~~R~g~s~~~~-~~~ 308 (685)
..-.+++...+..++.|+..+. +.+||+.+..-.......... ....-.++++. +++
T Consensus 257 -~~v~~~~~~~~~~~~~~~~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 257 -DIINALCFSPNRYWLCAATGPS----------------IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp -SCEEEEEECSSSSEEEEEETTE----------------EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred -ceEEeeecCCCCceeeccCCCE----------------EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 1112233334445566665433 667777655433221111100 01111223333 567
Q ss_pred EEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
.++.||.. ..|.+||+.++
T Consensus 320 ~l~sgs~D--------------g~v~iW~~~tG 338 (340)
T 4aow_A 320 TLFAGYTD--------------NLVRVWQVTIG 338 (340)
T ss_dssp EEEEEETT--------------SCEEEEEEEC-
T ss_pred EEEEEeCC--------------CEEEEEeCCCc
Confidence 77777753 34888888765
No 119
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.78 E-value=1.3 Score=44.67 Aligned_cols=200 Identities=8% Similarity=0.008 Sum_probs=99.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcE--EEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W--~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~ 148 (685)
++++.|. +..||+.+.. .+.+++||+.++.. ..+.... .++ ++++.. +..|| .+....
T Consensus 44 ~~~~s~d-g~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~--~~~--~~~~~s~dg~~l~-~~~~~~--- 105 (331)
T 3u4y_A 44 DTAITSD-CSNVVVTSDF---------CQTLVQIETQLEPPKVVAIQEGQ--SSM--ADVDITPDDQFAV-TVTGLN--- 105 (331)
T ss_dssp EEEECSS-SCEEEEEEST---------TCEEEEEECSSSSCEEEEEEECS--SCC--CCEEECTTSSEEE-ECCCSS---
T ss_pred eEEEcCC-CCEEEEEeCC---------CCeEEEEECCCCceeEEecccCC--CCc--cceEECCCCCEEE-EecCCC---
Confidence 5666662 3457666651 13789999988874 3333322 122 223333 34566 333211
Q ss_pred CccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CC-EEEEEccccCCCCceeeece-EEEEEcCCCc-eEEe
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYND-LYVFDLDQFK-WQEI 224 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~-~lyv~GG~~~~~~~~~~~~d-v~~yD~~t~~-W~~v 224 (685)
....+++||+.++.....-. ....-+.+++. ++ +||+.+... +. +++|++.... ....
T Consensus 106 -----~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~~---------~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 106 -----HPFNMQSYSFLKNKFISTIP----IPYDAVGIAISPNGNGLILIDRSS---------ANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp -----SSCEEEEEETTTTEEEEEEE----CCTTEEEEEECTTSSCEEEEEETT---------TTEEEEEEECTTCCEEEE
T ss_pred -----CcccEEEEECCCCCeEEEEE----CCCCccceEECCCCCEEEEEecCC---------CceEEEEEECCCCcEeec
Confidence 01379999999887655432 12222444443 33 577765431 34 6666655321 1111
Q ss_pred --ccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCcee---EEeecCCCCCCCc
Q 005655 225 --KPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW---SKVKKIGMPPGPR 297 (685)
Q Consensus 225 --~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W---~~~~~~g~~P~~R 297 (685)
... +....-..++.. +..||+.+.... .+.+||+.+.+. ...-..+.
T Consensus 168 ~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~----------------~v~v~d~~~~~~~~~~~~~~~~~----- 221 (331)
T 3u4y_A 168 GQEFI-----SGGTRPFNITFTPDGNFAFVANLIGN----------------SIGILETQNPENITLLNAVGTNN----- 221 (331)
T ss_dssp EEEEE-----CSSSSEEEEEECTTSSEEEEEETTTT----------------EEEEEECSSTTSCEEEEEEECSS-----
T ss_pred CCccc-----cCCCCccceEECCCCCEEEEEeCCCC----------------eEEEEECCCCcccceeeeccCCC-----
Confidence 111 111112333333 345777664433 378888877664 22222111
Q ss_pred ceeEEEEE-CCe-EEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 298 AGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 298 ~g~s~~~~-~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.-.++++. +++ +|+.... .+.|++||+.+.+...+..
T Consensus 222 ~~~~~~~spdg~~l~v~~~~--------------~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 222 LPGTIVVSRDGSTVYVLTES--------------TVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp CCCCEEECTTSSEEEEECSS--------------EEEEEEEETTTTEEEEEEE
T ss_pred CCceEEECCCCCEEEEEEcC--------------CCEEEEEECCCCceeeecc
Confidence 11234444 444 6665432 1348999999988765553
No 120
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=94.77 E-value=2.9 Score=41.54 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=19.9
Q ss_pred CCeEEEecceecccCCccccccccCCcEEEEECCCC-cEEEEEe
Q 005655 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLEL 348 (685)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-~W~~l~~ 348 (685)
++++++.||.. ..|.+|++.+. .|..+..
T Consensus 317 ~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 317 TGTILSSAGDD--------------GKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp SSCCEEEEETT--------------SCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecCC--------------CcEEEEecCcCcchhheee
Confidence 56667777653 34889998764 7777665
No 121
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=94.75 E-value=0.47 Score=51.88 Aligned_cols=59 Identities=19% Similarity=0.400 Sum_probs=40.6
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
++.+|+|-| +.+|+||..+++.....-+..| . --++....+.+|+|-| +..|+
T Consensus 158 ~~~~yfFkG-----------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-------------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-----------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-------------NQFLR 210 (460)
T ss_dssp SSEEEEEET-----------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-------------TEEEE
T ss_pred CCeEEEEec-----------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-------------CEEEE
Confidence 467888888 3579999998876543333322 3 3455556799999988 46788
Q ss_pred EECCCC
Q 005655 161 LDLKTN 166 (685)
Q Consensus 161 yD~~t~ 166 (685)
||..++
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887654
No 122
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=94.71 E-value=3.7 Score=46.99 Aligned_cols=198 Identities=11% Similarity=-0.010 Sum_probs=99.6
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCC--CccccccCeEEEEECCCCcE--EEcccCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN--QERFHHYKDFWMLDLKTNQW--EQLNLKGC 176 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~--~~~~~~~~dv~~yD~~t~~W--~~~~~~g~ 176 (685)
..|+++|+.+++....... ..+....+.. +++-++++....... .........+|++++.+..= ..+-. .
T Consensus 155 ~~i~v~dl~tg~~~~~~~~---~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~--~ 228 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPLK---DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG--A 228 (693)
T ss_dssp EEEEEEETTTCSEEEEEEE---EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEES--C
T ss_pred EEEEEEECCCCCCCccccC---CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEe--c
Confidence 4789999999987654321 1122222233 544333332221100 00001235699999877643 12211 1
Q ss_pred CC--CCccceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEE
Q 005655 177 PS--PRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVF 249 (685)
Q Consensus 177 P~--~Rsgh~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iy 249 (685)
+. +.... .+.+ ++ +|++...... ..+.+|++|+.+. .|..+... ..... ..+...++.||
T Consensus 229 ~~~~~~~~~-~~~~SpDg~~l~~~~~~~~------~~~~i~~~d~~~~~~~~~~l~~~-----~~~~~-~~~~~~g~~l~ 295 (693)
T 3iuj_A 229 IPAQHHRYV-GATVTEDDRFLLISAANST------SGNRLYVKDLSQENAPLLTVQGD-----LDADV-SLVDNKGSTLY 295 (693)
T ss_dssp SGGGCCSEE-EEEECTTSCEEEEEEESSS------SCCEEEEEETTSTTCCCEEEECS-----SSSCE-EEEEEETTEEE
T ss_pred CCCCCeEEE-EEEEcCCCCEEEEEEccCC------CCcEEEEEECCCCCCceEEEeCC-----CCceE-EEEeccCCEEE
Confidence 21 22122 2223 34 4444332211 1368999998765 78887654 11111 12344588999
Q ss_pred EEecccCCCCcccCCCCCCceeeeEEEEeCCC---ceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccc
Q 005655 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT---WEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIM 326 (685)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t---~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~ 326 (685)
+....... ...++.+++.+ ..|+.+.+.. ...- +....++.|++..-...
T Consensus 296 ~~t~~~~~-------------~~~l~~~d~~~~~~~~~~~l~~~~----~~~~-~~s~~g~~lv~~~~~~g--------- 348 (693)
T 3iuj_A 296 LLTNRDAP-------------NRRLVTVDAANPGPAHWRDLIPER----QQVL-TVHSGSGYLFAEYMVDA--------- 348 (693)
T ss_dssp EEECTTCT-------------TCEEEEEETTSCCGGGCEEEECCC----SSCE-EEEEETTEEEEEEEETT---------
T ss_pred EEECCCCC-------------CCEEEEEeCCCCCccccEEEecCC----CCEE-EEEEECCEEEEEEEECC---------
Confidence 98754321 23588888765 3588775421 1122 45555666665443321
Q ss_pred cccCCcEEEEECCCCcEEEEE
Q 005655 327 SLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 327 ~~~~ndl~~yd~~t~~W~~l~ 347 (685)
...|+++++.+.....+.
T Consensus 349 ---~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 349 ---TARVEQFDYEGKRVREVA 366 (693)
T ss_dssp ---EEEEEEECTTSCEEEEEC
T ss_pred ---eeEEEEEECCCCeeEEee
Confidence 345888888765444443
No 123
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=94.67 E-value=4.4 Score=41.31 Aligned_cols=210 Identities=10% Similarity=0.053 Sum_probs=107.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCC----CC-CcceeEEEEE--CCEEEEEcC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS----PP-PRSAHQAVSW--KNYLYIFGG 142 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~----P~-~R~~ha~v~~--~~~iyvfGG 142 (685)
+.+++.| ++.|||.... .+.|++|++... .-..+..... +. ...-..+++. ++.|||..+
T Consensus 94 ~gia~d~--~g~l~v~d~~---------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~ 162 (329)
T 3fvz_A 94 HGLSIDT--DGNYWVTDVA---------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG 162 (329)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred eEEEECC--CCCEEEEECC---------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence 3455555 4667776541 146888888665 2223321110 01 1112344444 578999875
Q ss_pred ccCCCCCccccccCeEEEEECCCCcEEEcccCCC-----CCCCc-cceEEEE-C-CEEEEEccccCCCCceeeeceEEEE
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-----PSPRS-GHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-----P~~Rs-gh~~v~~-~-~~lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
+. .+.+.+||+....-..+...+. +.... -+++++- + +.||+.... .+.|.+|
T Consensus 163 ~~----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~---------~~~I~~~ 223 (329)
T 3fvz_A 163 YC----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE---------NGRIQCF 223 (329)
T ss_dssp SS----------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---------TTEEEEE
T ss_pred CC----------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---------CCEEEEE
Confidence 21 2568899965544343432111 11111 2334443 3 799997653 3579999
Q ss_pred EcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCC
Q 005655 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (685)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P 294 (685)
|+.+.+....-..+ .....-.+++...+.+|+..|.... .......++++++.+.+....-..+ ..
T Consensus 224 ~~~~G~~~~~~~~~----~~~~~~~~~~~~pg~~~~~~g~~~v---------~~~~~~~v~~~~~~~g~~~~~~~~~-~~ 289 (329)
T 3fvz_A 224 KTDTKEFVREIKHA----SFGRNVFAISYIPGFLFAVNGKPYF---------GDQEPVQGFVMNFSSGEIIDVFKPV-RK 289 (329)
T ss_dssp ETTTCCEEEEECCT----TTTTCEEEEEEETTEEEEEECCCCT---------TCSCCCCEEEEETTTCCEEEEECCS-SS
T ss_pred ECCCCcEEEEEecc----ccCCCcceeeecCCEEEEeCCCEEe---------ccCCCcEEEEEEcCCCeEEEEEcCC-CC
Confidence 99866654433221 1111222344445778877775332 0122345888998777655543211 01
Q ss_pred CCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 295 ~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
....-+++++. ++.|||.... .+.|++|++.
T Consensus 290 ~~~~p~~ia~~~dG~lyvad~~--------------~~~I~~~~~~ 321 (329)
T 3fvz_A 290 HFDMPHDIVASEDGTVYIGDAH--------------TNTVWKFTLT 321 (329)
T ss_dssp CCSSEEEEEECTTSEEEEEESS--------------SCCEEEEEEE
T ss_pred ccCCeeEEEECCCCCEEEEECC--------------CCEEEEEeCC
Confidence 12223344444 5678887643 2457887764
No 124
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.67 E-value=0.45 Score=48.08 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=29.5
Q ss_pred ccEEEEEcC-CCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECC--CCcEEEccc
Q 005655 101 GDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLK--TNQWEQLNL 173 (685)
Q Consensus 101 ndv~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~--t~~W~~~~~ 173 (685)
+.+++|++. +.++..+.... ....-+.++.. + ..||+.+.. . ..+.+|++. ++.+..+..
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~-~----------~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRP-E----------FRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETT-T----------TEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecC-C----------CeEEEEEecCCCCceeeccc
Confidence 367888874 44554432211 11112223333 3 456665442 1 346666665 778876654
No 125
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=94.64 E-value=2.4 Score=48.10 Aligned_cols=158 Identities=9% Similarity=0.061 Sum_probs=80.5
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCC-----CcEEEcccCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-----NQWEQLNLKG 175 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t-----~~W~~~~~~g 175 (685)
..++++|+.+++-..+.... . ........-++..+++.. -+.++++|+.+ +....+...+
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~--~-~~~~~~~SpdG~~la~~~------------~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTN--E-ETASLDFSPVGDRVAYVR------------NHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp TEEEEEETTTTEEEEEECCT--T-CCTTCEECTTSSEEEEEE------------TTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred CEEEEEECCCCceEEccCCc--c-cccCCcCCCCCCEEEEEE------------CCeEEEEecCcccccCCCcEEeccCC
Confidence 47899999998877665432 1 111111222343334431 14689999988 7776665422
Q ss_pred CCCCCcc----------ceEEEE--CCEEEEEccccCCCCc------------------------eeeeceEEEEEcCCC
Q 005655 176 CPSPRSG----------HRMVLY--KHKIIVFGGFYDTLRE------------------------VRYYNDLYVFDLDQF 219 (685)
Q Consensus 176 ~P~~Rsg----------h~~v~~--~~~lyv~GG~~~~~~~------------------------~~~~~dv~~yD~~t~ 219 (685)
......+ ...+.| +++.++++.++..... ......|++||+.+.
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 1110000 122333 5666666654321100 012367999999988
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc-eeEEee
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW-EWSKVK 288 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~-~W~~~~ 288 (685)
.-..+.... +....-.+++.. ++..++++..+.. .....++.+|+.+. .+..+.
T Consensus 246 ~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~~~~~~-----------~~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 246 KTVYLQTGE----PKEKFLTNLSWSPDENILYVAEVNRA-----------QNECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp EEEECCCCS----CTTCEEEEEEECTTSSEEEEEEECTT-----------SCEEEEEEEETTTCCEEEEEE
T ss_pred ceEeeccCC----CCceeEeeEEEECCCCEEEEEEeCCC-----------CCeeEEEEEECCCCceeeEEE
Confidence 765554320 111111222222 5554455444322 23456899999887 676654
No 126
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.64 E-value=1.8 Score=43.10 Aligned_cols=169 Identities=13% Similarity=0.033 Sum_probs=82.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCC-cceeEEEEE-CCEEEEE----cCccC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIF----GGEFT 145 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~-R~~ha~v~~-~~~iyvf----GG~~~ 145 (685)
.++++.| ++.||+... + .+.|++||+.+++...+.......+ ..-..+++. ++.||+. |....
T Consensus 72 ~~l~~~~--dg~l~v~~~----~-----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 72 NGHCLNK--QGHLIACSH----G-----LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEECT--TCCEEEEET----T-----TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred ceeeECC--CCcEEEEec----C-----CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 4455555 566766543 1 1368999998888876643210011 111223333 5788886 43110
Q ss_pred CC--CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcC-CCce
Q 005655 146 SP--NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKW 221 (685)
Q Consensus 146 s~--~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~~W 221 (685)
.. ..........+|+|++. +....+... . ..-.+++.. ++.+++.+.. .+.|++|++. +...
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~---~~~~gi~~s~dg~~lv~~~~---------~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GTLSAPIRD-R---VKPNGLAFLPSGNLLVSDTG---------DNATHRYCLNARGET 206 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SCEEEEECC-C---SSEEEEEECTTSCEEEEETT---------TTEEEEEEECSSSCE
T ss_pred cccccccccCCCcEEEEECCC-CCEEEeecC-C---CCCccEEECCCCCEEEEeCC---------CCeEEEEEECCCCcC
Confidence 00 00000012579999987 665554321 1 111223332 4555543321 2578899886 4554
Q ss_pred -EEecc-CCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 222 -QEIKP-RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 222 -~~v~~-~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
..... .... ..| .+++.. ++.|||.. .. .+++|++.......+.
T Consensus 207 ~~~~~~~~~~~--~~p---~~i~~d~~G~l~v~~--~~----------------~v~~~~~~g~~~~~~~ 253 (296)
T 3e5z_A 207 EYQGVHFTVEP--GKT---DGLRVDAGGLIWASA--GD----------------GVHVLTPDGDELGRVL 253 (296)
T ss_dssp EEEEEEECCSS--SCC---CSEEEBTTSCEEEEE--TT----------------EEEEECTTSCEEEEEE
T ss_pred cCCCeEeeCCC--CCC---CeEEECCCCCEEEEc--CC----------------eEEEECCCCCEEEEEE
Confidence 21111 1001 111 123443 67788776 22 2788999866555554
No 127
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.62 E-value=3.8 Score=40.36 Aligned_cols=185 Identities=9% Similarity=0.044 Sum_probs=94.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
+++++.+. ++.|||.+.. ..+.+++||+.......+.... ...-+++++. ++.|||....
T Consensus 80 ~~i~~~~~-~g~l~v~~~~--------~~~~i~~~d~~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~------- 140 (286)
T 1q7f_A 80 NRVAVVRN-SGDIIVTERS--------PTHQIQIYNQYGQFVRKFGATI---LQHPRGVTVDNKGRIIVVECK------- 140 (286)
T ss_dssp EEEEEETT-TTEEEEEECG--------GGCEEEEECTTSCEEEEECTTT---CSCEEEEEECTTSCEEEEETT-------
T ss_pred eEEEEEcC-CCeEEEEcCC--------CCCEEEEECCCCcEEEEecCcc---CCCceEEEEeCCCCEEEEECC-------
Confidence 34444222 5788887641 0136888996655444443321 1122344443 4678887542
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (685)
.+.+++||+.......+...+ ....-+++++- ++.||+.+.. .+.|.+||+.......+...
T Consensus 141 ----~~~i~~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~~~-- 203 (286)
T 1q7f_A 141 ----VMRVIIFDQNGNVLHKFGCSK--HLEFPNGVVVNDKQEIFISDNR---------AHCVKVFNYEGQYLRQIGGE-- 203 (286)
T ss_dssp ----TTEEEEECTTSCEEEEEECTT--TCSSEEEEEECSSSEEEEEEGG---------GTEEEEEETTCCEEEEESCT--
T ss_pred ----CCEEEEEcCCCCEEEEeCCCC--ccCCcEEEEECCCCCEEEEECC---------CCEEEEEcCCCCEEEEEccC--
Confidence 246889997665544443211 11111223333 5788886542 35789999866544444322
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CC
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~ 307 (685)
+.. ..-.++++. ++.|||...... ..+.+|++....-..+.... +. ..-+++++. ++
T Consensus 204 g~~---~~p~~i~~d~~G~l~v~~~~~~---------------~~i~~~~~~g~~~~~~~~~~--~~-~~~~~i~~~~~g 262 (286)
T 1q7f_A 204 GIT---NYPIGVGINSNGEILIADNHNN---------------FNLTIFTQDGQLISALESKV--KH-AQCFDVALMDDG 262 (286)
T ss_dssp TTS---CSEEEEEECTTCCEEEEECSSS---------------CEEEEECTTSCEEEEEEESS--CC-SCEEEEEEETTT
T ss_pred Ccc---CCCcEEEECCCCCEEEEeCCCC---------------EEEEEECCCCCEEEEEcccC--CC-CcceeEEECCCC
Confidence 111 111234443 667888765432 13778887655444443211 11 112344444 67
Q ss_pred eEEEec
Q 005655 308 RALLFG 313 (685)
Q Consensus 308 ~iyvfG 313 (685)
++|+..
T Consensus 263 ~l~vs~ 268 (286)
T 1q7f_A 263 SVVLAS 268 (286)
T ss_dssp EEEEEE
T ss_pred cEEEEC
Confidence 888773
No 128
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.61 E-value=0.54 Score=49.95 Aligned_cols=51 Identities=10% Similarity=-0.041 Sum_probs=27.3
Q ss_pred EEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+.+||+.+..-...... .....+++.. ++.+++.+|..+ +.|.+||+.+..
T Consensus 303 I~iwd~~t~~~~~~~~~-----~~~v~~~~~~~~~~~lv~~sg~~d-------------~~I~iwd~~~~~ 355 (420)
T 4gga_A 303 IRIWNVCSGACLSAVDA-----HSQVCSILWSPHYKELISGHGFAQ-------------NQLVIWKYPTMA 355 (420)
T ss_dssp EEEEETTTTEEEEEEEC-----SSCEEEEEEETTTTEEEEEECTTT-------------CCEEEEETTTCC
T ss_pred EEEEeCCccccceeecc-----ccceeeeeecCCCCeEEEEEecCC-------------CEEEEEECCCCc
Confidence 67788877654443321 1112333333 344555445432 459999987653
No 129
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.60 E-value=3.2 Score=43.21 Aligned_cols=184 Identities=14% Similarity=0.056 Sum_probs=88.1
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcce-eEEEEE---CCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSA-HQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG 175 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~-ha~v~~---~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g 175 (685)
.+.+||+.++.-...-....|..... ...+.+ ++.+++.|+.+. .+.+||+.... -..+..
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----------~v~~wd~~~~~~~~~~~~~-- 247 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-----------TVRLWDLRITSRAVRTYHG-- 247 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-----------CEEEEETTTTCCCCEEECC--
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-----------eEEEEECCCCCcceEEECC--
Confidence 57788888876553322111111111 112222 467888887643 47788876321 111111
Q ss_pred CCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCcc-ceeEEEe-CCEEEEE
Q 005655 176 CPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS-GFQFFVY-QDEVFLY 251 (685)
Q Consensus 176 ~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs-~~s~~~~-~~~Iyv~ 251 (685)
.... -..+.+ ++.+++.|+.+ ..|.+||+.+..-..+-............ -.+++.. ++.+++.
T Consensus 248 -h~~~--v~~v~~~p~~~~l~s~s~D---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 315 (380)
T 3iz6_a 248 -HEGD--INSVKFFPDGQRFGTGSDD---------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA 315 (380)
T ss_dssp -CSSC--CCEEEECTTSSEEEEECSS---------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred -cCCC--eEEEEEecCCCeEEEEcCC---------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEE
Confidence 1111 112333 56677777753 35788898876544332221000000111 1222332 6677777
Q ss_pred ecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee-cCCCCCCCcceeEEEEE-CCeEEEecceecccCCcccccccc
Q 005655 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK-KIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLF 329 (685)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~-~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~ 329 (685)
|+.++. +.+||+.+..-.... ........+. .++++. ++..++.||..+
T Consensus 316 g~~dg~----------------i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~sgs~D~------------ 366 (380)
T 3iz6_a 316 GYSNGD----------------CYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGLSSDGSALCTGSWDK------------ 366 (380)
T ss_dssp ECTTSC----------------EEEEETTTCCEEEEECCSCSSCCCCC-CEEEECSSSSEEEEECTTS------------
T ss_pred EECCCC----------------EEEEECCCCceEEEEecccCCCCCce-EEEEECCCCCEEEEeeCCC------------
Confidence 776654 788887665433221 1100011111 223333 677778887643
Q ss_pred CCcEEEEECCCC
Q 005655 330 LNELYGFQLDNH 341 (685)
Q Consensus 330 ~ndl~~yd~~t~ 341 (685)
.|.+|++...
T Consensus 367 --~i~iW~~~~~ 376 (380)
T 3iz6_a 367 --NLKIWAFSGH 376 (380)
T ss_dssp --CEEEEECCSS
T ss_pred --CEEEEecCCC
Confidence 3777776653
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.24 Score=57.63 Aligned_cols=198 Identities=11% Similarity=0.080 Sum_probs=97.7
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C--CEEEEEcCccCCCCCccccccCeE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K--NYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~--~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
+.+++.|+. + +.+.+||+.++.|..+..... ....-.+++.. + +.++++||.. ..+
T Consensus 67 ~~~l~s~s~--D-------g~I~vwd~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~l~sgs~d-----------g~I 125 (753)
T 3jro_A 67 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSD-----------GKV 125 (753)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT-----------SEE
T ss_pred CCEEEEEeC--C-------CeEEEEECCCCcccccccccC-CCCCeEEEEECCCCCCCEEEEEeCC-----------CcE
Confidence 667777773 2 358889999998775544321 11122223332 2 5677777753 357
Q ss_pred EEEECCCCcEEEc-ccCCCCCCCccceEEEE---------------CCEEEEEccccCCCCceeeeceEEEEEcCCC--c
Q 005655 159 WMLDLKTNQWEQL-NLKGCPSPRSGHRMVLY---------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K 220 (685)
Q Consensus 159 ~~yD~~t~~W~~~-~~~g~P~~Rsgh~~v~~---------------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~ 220 (685)
.+||+.+..-... ...+.+. ...++.+ ++.+++.|+.+ ..|.+||+.+. .
T Consensus 126 ~vwdl~~~~~~~~~~~~~~~~---~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~~~~ 193 (753)
T 3jro_A 126 SVVEFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQT 193 (753)
T ss_dssp EEEECCSSSCCCCEEEECCSS---CEEEEEECCCC---------CGGGCCEEEEETT---------SCEEEEEEETTTTE
T ss_pred EEEEeecCCCcceeEeecCCC---ceEEEEecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCCccc
Confidence 7888876521111 1100111 1112222 25666677653 34677776543 3
Q ss_pred eEEeccCCCCCCCCCccceeEEEe-C---CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEeecCCCCC
Q 005655 221 WQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPP 294 (685)
Q Consensus 221 W~~v~~~~~~~~P~~Rs~~s~~~~-~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~g~~P 294 (685)
+..+..... ....-.+++.. + +.+++.||..+. +.+||+.+. .+...... ...
T Consensus 194 ~~~~~~~~~----h~~~V~~l~~sp~~~~~~~l~s~s~Dg~----------------I~iwd~~~~~~~~~~~~~~-~~~ 252 (753)
T 3jro_A 194 YVLESTLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EEK 252 (753)
T ss_dssp EEEEEEECC----CSSCEEEEEECCCCSSSEEEEEEESSSC----------------EEEEEESSSSSCCBCCBSS-SSC
T ss_pred ceeeeeecC----CCCcEEEEEeccCCCCCCEEEEEecCCE----------------EEEecCCCCCCcceeEEec-cCC
Confidence 444433311 11111223333 4 788888888765 666666543 22211110 001
Q ss_pred CCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCC-CcEEEEE
Q 005655 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-HRWYPLE 347 (685)
Q Consensus 295 ~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t-~~W~~l~ 347 (685)
....-.++++. ++..++.||.. +.|.+|++.+ ..|..+.
T Consensus 253 ~~~~v~~l~~spdg~~l~s~s~D--------------g~I~vwd~~~~~~~~~~~ 293 (753)
T 3jro_A 253 FPDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAG 293 (753)
T ss_dssp CSSCCCCEEECTTTCCEEEECSS--------------SCEECCBCCSSSCCBCCC
T ss_pred CCCceEEEEEcCCCCEEEEEcCC--------------CEEEEEecCCCCCccccc
Confidence 11112233333 66777777753 3488888774 4665544
No 131
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.52 E-value=4.5 Score=40.81 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=68.6
Q ss_pred CCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccC
Q 005655 67 SPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFT 145 (685)
Q Consensus 67 ~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~ 145 (685)
.......+++.+ ++.||+.--. .+.|++||+....-..+.. +..-+.+++. ++.|||......
T Consensus 30 ~~~~pegia~~~--~g~lyv~d~~---------~~~I~~~d~~g~~~~~~~~-----~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 30 VNTFLENLASAP--DGTIFVTNHE---------VGEIVSITPDGNQQIHATV-----EGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp TTCCEEEEEECT--TSCEEEEETT---------TTEEEEECTTCCEEEEEEC-----SSEEEEEEECTTSCEEEEEECTT
T ss_pred CCCCcceEEECC--CCCEEEEeCC---------CCeEEEECCCCceEEEEeC-----CCCceeEEEcCCCcEEEEeccCC
Confidence 345566777766 5678887531 1368999988753222222 1233444444 467888753211
Q ss_pred CCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
-..+++||+.++....+.. .+..+.....+.+ ++.+|+.-- ....||++|+.+.
T Consensus 94 ---------~~~v~~~d~~~g~~~~~~~--~~~~~~~~g~~~~~~~~~~v~d~---------~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 94 ---------SIPVVSLVKSDGTVETLLT--LPDAIFLNGITPLSDTQYLTADS---------YRGAIWLIDVVQP 148 (306)
T ss_dssp ---------SCEEEEEECTTSCEEEEEE--CTTCSCEEEEEESSSSEEEEEET---------TTTEEEEEETTTT
T ss_pred ---------cceEEEEcCCCCeEEEEEe--CCCccccCcccccCCCcEEEEEC---------CCCeEEEEeCCCC
Confidence 1248899998888877655 3445555555555 445666431 1357899998764
No 132
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.51 E-value=0.97 Score=46.60 Aligned_cols=147 Identities=6% Similarity=0.160 Sum_probs=73.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.+++.|+. + +.+.+|+..+..+..+..... ....-.+++.. ++.+++.|+..
T Consensus 66 ~~~~sp--~g~~l~s~s~--D-------~~v~iw~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~s~D------- 126 (345)
T 3fm0_A 66 KVAWSP--CGNYLASASF--D-------ATTCIWKKNQDDFECVTTLEG-HENEVKSVAWAPSGNLLATCSRD------- 126 (345)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEEECCC-EEEEEEECC-CSSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEEC--C-------CcEEEEEccCCCeEEEEEccC-CCCCceEEEEeCCCCEEEEEECC-------
Confidence 444555 5666777762 2 246777877776654432211 11111222222 46677777753
Q ss_pred ccccCeEEEEECCCC-cEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 152 FHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~-~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
..+.+||+.+. .+..+.. +.........+.+ ++.+++.|+.+ ..+.+||..+..|..+....
T Consensus 127 ----~~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d---------~~i~~w~~~~~~~~~~~~~~ 191 (345)
T 3fm0_A 127 ----KSVWVWEVDEEDEYECVSV--LNSHTQDVKHVVWHPSQELLASASYD---------DTVKLYREEEDDWVCCATLE 191 (345)
T ss_dssp ----SCEEEEEECTTSCEEEEEE--ECCCCSCEEEEEECSSSSCEEEEETT---------SCEEEEEEETTEEEEEEEEC
T ss_pred ----CeEEEEECCCCCCeEEEEE--ecCcCCCeEEEEECCCCCEEEEEeCC---------CcEEEEEecCCCEEEEEEec
Confidence 34777887654 3333322 1111111223333 45677777753 35778888888776554431
Q ss_pred CCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
.. ...-.+++.. ++.+++.|+.++.
T Consensus 192 ~h----~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 192 GH----ESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp CC----SSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC----CCceEEEEECCCCCEEEEEeCCCe
Confidence 11 1111222222 5667777776654
No 133
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.49 E-value=1.7 Score=44.01 Aligned_cols=187 Identities=10% Similarity=0.090 Sum_probs=86.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++...| ++.+++.|+. + +.+.+||+.+.+....... ...-.+++.. ++..+++++.....
T Consensus 79 ~~~~~~--~~~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~~---- 139 (369)
T 3zwl_B 79 SIDVDC--FTKYCVTGSA--D-------YSIKLWDVSNGQCVATWKS----PVPVKRVEFSPCGNYFLAILDNVMK---- 139 (369)
T ss_dssp EEEECT--TSSEEEEEET--T-------TEEEEEETTTCCEEEEEEC----SSCEEEEEECTTSSEEEEEECCBTT----
T ss_pred EEEEcC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEeec----CCCeEEEEEccCCCEEEEecCCccC----
Confidence 344454 4556666652 2 3688899988765533221 1112223333 35555555433111
Q ss_pred ccccCeEEEEECCCCc----EEEcccCCC-----CCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCC-C
Q 005655 152 FHHYKDFWMLDLKTNQ----WEQLNLKGC-----PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-F 219 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~----W~~~~~~g~-----P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~ 219 (685)
....+.+||+.+.. +........ .........+.+ ++.+++.|+.. ..|.+||+.+ .
T Consensus 140 --~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~ 208 (369)
T 3zwl_B 140 --NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD---------GKISKYDVSNNY 208 (369)
T ss_dssp --BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT---------SEEEEEETTTTT
T ss_pred --CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC---------CEEEEEECCCCc
Confidence 12456667665432 222211100 111112223333 45566666642 4688999987 3
Q ss_pred ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcc
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~ 298 (685)
.-...-.. ....-.+++.. ++.+++.|+..+. +.+||+.+......-.. ...
T Consensus 209 ~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~v~d~~~~~~~~~~~~-----~~~ 261 (369)
T 3zwl_B 209 EYVDSIDL------HEKSISDMQFSPDLTYFITSSRDTN----------------SFLVDVSTLQVLKKYET-----DCP 261 (369)
T ss_dssp EEEEEEEC------CSSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTCCEEEEEEC-----SSC
T ss_pred EeEEEEec------CCCceeEEEECCCCCEEEEecCCce----------------EEEEECCCCceeeeecC-----CCC
Confidence 32222111 11112223333 5666777766543 77888877654443321 111
Q ss_pred eeEEEEE-CCeEEEeccee
Q 005655 299 GFSMCVH-KKRALLFGGVV 316 (685)
Q Consensus 299 g~s~~~~-~~~iyvfGG~~ 316 (685)
..++++. .+..+++|+..
T Consensus 262 ~~~~~~~~~~~~l~~~~~~ 280 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQ 280 (369)
T ss_dssp EEEEEECSSSSEEEEEECC
T ss_pred ceeEEecCCCceEEEeecC
Confidence 2233333 56666666543
No 134
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.47 E-value=1.4 Score=45.69 Aligned_cols=135 Identities=13% Similarity=0.007 Sum_probs=71.1
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE----CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (685)
..+.+||+.+......-. ...... .++.+ ++.+++.|+.+ ..|.+||+.+.+....-..
T Consensus 176 ~~v~lwd~~~~~~~~~~~--~h~~~v--~~~~~~~~~~g~~l~sgs~D---------g~v~~wd~~~~~~~~~~~~---- 238 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFH--GHGADV--LCLDLAPSETGNTFVSGGCD---------KKAMVWDMRSGQCVQAFET---- 238 (354)
T ss_dssp SEEEEEETTTCCEEEEEE--CCSSCE--EEEEECCCSSCCEEEEEETT---------SCEEEEETTTCCEEEEECC----
T ss_pred CcEEEEeCCCCeEEEEEc--CCCCCe--EEEEEEeCCCCCEEEEEeCC---------CeEEEEECCCCcEEEEecC----
Confidence 457788988876433211 111111 11222 34677777753 3688899988765433211
Q ss_pred CCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCe
Q 005655 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKR 308 (685)
Q Consensus 232 ~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~ 308 (685)
. ...-.+++.. ++.+++.|+.++. +.+||+.+..-..+-.. .....+.+.+.+ +++
T Consensus 239 -h-~~~v~~v~~~p~~~~l~s~s~D~~----------------v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 239 -H-ESDVNSVRYYPSGDAFASGSDDAT----------------CRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGR 297 (354)
T ss_dssp -C-SSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSS
T ss_pred -C-CCCeEEEEEeCCCCEEEEEeCCCe----------------EEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCC
Confidence 1 1111122222 5667888887765 77888876643322211 112223333333 567
Q ss_pred EEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+++.|+.. +.|.+||+.+..
T Consensus 298 ~l~~g~~d--------------~~i~vwd~~~~~ 317 (354)
T 2pbi_B 298 LLFAGYND--------------YTINVWDVLKGS 317 (354)
T ss_dssp EEEEEETT--------------SCEEEEETTTCS
T ss_pred EEEEEECC--------------CcEEEEECCCCc
Confidence 77776642 358999987653
No 135
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=94.41 E-value=5 Score=40.85 Aligned_cols=199 Identities=10% Similarity=0.006 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCC--cEEEcccCCC-
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC- 176 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g~- 176 (685)
+.++++|+.+.+........ .-..-+.+++. ++.|||.... .+.+.+||+... .-..+...+.
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~--~~~~p~gia~d~~g~l~v~d~~-----------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKN--LFYLPHGLSIDTDGNYWVTDVA-----------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTTCCEEEEECTT--TCSSEEEEEECTTSCEEEEETT-----------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCCCeEEeccCCC--ccCCceEEEECCCCCEEEEECC-----------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 46999999887765432211 11122344444 5779987652 256889998765 2233322111
Q ss_pred ---CCCCccc-eEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC--CCCcc-ceeEEEe-C-
Q 005655 177 ---PSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW--PSPRS-GFQFFVY-Q- 245 (685)
Q Consensus 177 ---P~~Rsgh-~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~--P~~Rs-~~s~~~~-~- 245 (685)
+...... .+++. ++.||+..++. .+.|.+||+....-..+.....+.. +.... -+++++. +
T Consensus 136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~~--------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~ 207 (329)
T 3fvz_A 136 GSDQNHFCQPTDVAVEPSTGAVFVSDGYC--------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 207 (329)
T ss_dssp CCSTTCCSSEEEEEECTTTCCEEEEECSS--------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT
T ss_pred CCCccccCCCcEEEEeCCCCeEEEEeCCC--------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC
Confidence 1111122 33333 57899987531 3568899865544333332211100 11111 2334443 3
Q ss_pred CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCcccc
Q 005655 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (685)
Q Consensus 246 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~ 325 (685)
+.|||....... +.+|++.+.+....-.. ......-.++++..+.+|+..|.....
T Consensus 208 g~l~v~d~~~~~----------------I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~------ 263 (329)
T 3fvz_A 208 DQLCVADRENGR----------------IQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFG------ 263 (329)
T ss_dssp TEEEEEETTTTE----------------EEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTT------
T ss_pred CEEEEEECCCCE----------------EEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEec------
Confidence 899998765433 88999886655544321 112222335555567777777653211
Q ss_pred ccccCCcEEEEECCCCcEEE
Q 005655 326 MSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 326 ~~~~~ndl~~yd~~t~~W~~ 345 (685)
....+.+++||+.+.....
T Consensus 264 -~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 264 -DQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp -CSCCCCEEEEETTTCCEEE
T ss_pred -cCCCcEEEEEEcCCCeEEE
Confidence 1124579999988876554
No 136
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.39 E-value=1.2 Score=46.29 Aligned_cols=147 Identities=12% Similarity=-0.023 Sum_probs=73.3
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeece
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYND 210 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~d 210 (685)
++.+++.|+.. ..+.++|+.++.-...-. ...... .++.+ +..+++.|+.+ ..
T Consensus 138 dg~~l~sgs~d-----------~~i~iwd~~~~~~~~~~~--~h~~~V--~~~~~~~~~~~~l~s~s~D---------~~ 193 (344)
T 4gqb_B 138 SGTQAVSGSKD-----------ICIKVWDLAQQVVLSSYR--AHAAQV--TCVAASPHKDSVFLSCSED---------NR 193 (344)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSSCE--EEEEECSSCTTEEEEEETT---------SC
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc--CcCCce--EEEEecCCCCCceeeeccc---------cc
Confidence 46677777753 347888998875432211 111111 22222 33577777753 35
Q ss_pred EEEEEcCCCceEEeccCCCCCCCCCcc-ceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 211 LYVFDLDQFKWQEIKPRFGSMWPSPRS-GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 211 v~~yD~~t~~W~~v~~~~~~~~P~~Rs-~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
|.+||+.+.+-...-.. ..... -.+++.. ++.+++.|+.++. +.+||+.+.+-...
T Consensus 194 v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~l~sg~~dg~----------------v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 194 ILLWDTRCPKPASQIGC-----SAPGYLPTSLAWHPQQSEVFVFGDENGT----------------VSLVDTKSTSCVLS 252 (344)
T ss_dssp EEEEETTSSSCEEECC---------CCCEEEEEECSSCTTEEEEEETTSE----------------EEEEESCC--CCEE
T ss_pred cccccccccceeeeeec-----ceeeccceeeeecCCCCcceEEeccCCc----------------EEEEECCCCcEEEE
Confidence 78899987654432211 11111 1122222 5668888887654 67788765432111
Q ss_pred ecCCCCCCCcceeEEEEE-CC-eEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 288 KKIGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~-~~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
-. + ....-.++++. ++ ++++.|+.. ..|.+||+.+..-
T Consensus 253 ~~-~---h~~~v~~v~fsp~g~~~lasgs~D--------------~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 253 SA-V---HSQCVTGLVFSPHSVPFLASLSED--------------CSLAVLDSSLSEL 292 (344)
T ss_dssp EE-C---CSSCEEEEEECSSSSCCEEEEETT--------------SCEEEECTTCCEE
T ss_pred Ec-C---CCCCEEEEEEccCCCeEEEEEeCC--------------CeEEEEECCCCcE
Confidence 10 0 11112233333 33 556666543 3488899887653
No 137
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=94.38 E-value=2.4 Score=42.32 Aligned_cols=123 Identities=10% Similarity=0.123 Sum_probs=60.8
Q ss_pred eEEEEeccCC-CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEe-cCCCCCCC-cceeEEEEE-CCEEEEEcCccCCC
Q 005655 72 CSLNINPLKE-TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~-~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l-~s~~~P~~-R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
+++++.+ + +.|||.+.. +.+++||+. ++...+ .......+ ..-+.++.. ++.||+........
T Consensus 74 ~~i~~~~--~~g~l~v~~~~----------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~ 140 (314)
T 1pjx_A 74 AGCQCDR--DANQLFVADMR----------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA 140 (314)
T ss_dssp EEEEECS--SSSEEEEEETT----------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred ceEEEec--CCCcEEEEECC----------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccc
Confidence 3455554 4 678876541 258899998 777765 32211111 112333333 57788865432100
Q ss_pred ----CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-----CC-EEEEEccccCCCCceeeeceEEEEEcC
Q 005655 148 ----NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 148 ----~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-----~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
..........+++||+. .+...+... ... -+.++.. ++ .||+.... .+.|++||+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~~~---~~~i~~~~~~d~dg~~l~v~~~~---------~~~i~~~~~~ 206 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-FQF---PNGIAVRHMNDGRPYQLIVAETP---------TKKLWSYDIK 206 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-ESS---EEEEEEEECTTSCEEEEEEEETT---------TTEEEEEEEE
T ss_pred cccccccccCCCCeEEEECCC-CCEEEeccC-CCC---cceEEEecccCCCCCEEEEEECC---------CCeEEEEECC
Confidence 00000112579999987 666554321 111 1233333 23 56665432 2568888875
Q ss_pred -CCce
Q 005655 218 -QFKW 221 (685)
Q Consensus 218 -t~~W 221 (685)
+..+
T Consensus 207 ~~g~~ 211 (314)
T 1pjx_A 207 GPAKI 211 (314)
T ss_dssp ETTEE
T ss_pred CCCcc
Confidence 4433
No 138
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.36 E-value=1.9 Score=49.86 Aligned_cols=143 Identities=12% Similarity=0.133 Sum_probs=77.7
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
++.|||+||.. +.+++||+.++.+..+...+.+....-.+++.- ++.|++ |.. .-+.
T Consensus 482 ~g~lWi~~~t~-----------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~----------~Gl~ 539 (758)
T 3ott_A 482 EGNVWVLLYNN-----------KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFH----------GGVM 539 (758)
T ss_dssp TSCEEEEETTC-----------SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EET----------TEEE
T ss_pred CCCEEEEccCC-----------CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-Eec----------CceE
Confidence 47899876642 358899999999988754222211111222222 567886 331 3488
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~ 292 (685)
+||+.+..+..+.. ..+|. ..-++++..++.|+|... .. +.+|||.+.+.....
T Consensus 540 ~~~~~~~~~~~~~~---~gl~~-~~i~~i~~~~g~lWi~t~--~G----------------l~~~~~~~~~~~~~~---- 593 (758)
T 3ott_A 540 RINPKDESQQSISF---GSFSN-NEILSMTCVKNSIWVSTT--NG----------------LWIIDRKTMDARQQN---- 593 (758)
T ss_dssp EECC--CCCCBCCC---CC----CCEEEEEEETTEEEEEES--SC----------------EEEEETTTCCEEEC-----
T ss_pred EEecCCCceEEecc---cCCCc-cceEEEEECCCCEEEECC--CC----------------eEEEcCCCceeEEec----
Confidence 99998887766532 11232 223334444788887652 22 789999988766542
Q ss_pred CCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 293 ~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
.|..... ++++. .+--+.|||..+ +..|+|..
T Consensus 594 ~~~~~~~-~~~~~~~~G~l~fG~~~G---------------l~~f~p~~ 626 (758)
T 3ott_A 594 MTNKRFT-SLLFDPKEDCVYLGGADG---------------FGISHSNL 626 (758)
T ss_dssp -CCCCCS-EEEEETTTTEEEEECBSE---------------EEEEEC--
T ss_pred CCCCcee-eeEEECCCCcEEEecCCc---------------eEEEChhh
Confidence 1222222 23333 344556777654 77777763
No 139
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.31 E-value=1.4 Score=44.21 Aligned_cols=103 Identities=15% Similarity=0.052 Sum_probs=54.9
Q ss_pred EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCc
Q 005655 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGI 269 (685)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (685)
.+++.||.+ ..+.+||+.+......-.. . ...-.+++.. ++.+++.|+.++.
T Consensus 186 ~~~~s~~~d---------~~i~i~d~~~~~~~~~~~~-----h-~~~v~~~~~s~~~~~l~s~s~Dg~------------ 238 (340)
T 4aow_A 186 PIIVSCGWD---------KLVKVWNLANCKLKTNHIG-----H-TGYLNTVTVSPDGSLCASGGKDGQ------------ 238 (340)
T ss_dssp CEEEEEETT---------SCEEEEETTTTEEEEEECC-----C-SSCEEEEEECTTSSEEEEEETTCE------------
T ss_pred cEEEEEcCC---------CEEEEEECCCCceeeEecC-----C-CCcEEEEEECCCCCEEEEEeCCCe------------
Confidence 455566542 3578889887654433221 1 1111223333 6677888877654
Q ss_pred eeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 270 ~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
+.+||+.+..-...... ...-.+++...+..++.|+.. +.|.+||+.+..-
T Consensus 239 ----i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~d--------------~~i~iwd~~~~~~ 289 (340)
T 4aow_A 239 ----AMLWDLNEGKHLYTLDG-----GDIINALCFSPNRYWLCAATG--------------PSIKIWDLEGKII 289 (340)
T ss_dssp ----EEEEETTTTEEEEEEEC-----SSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTEE
T ss_pred ----EEEEEeccCceeeeecC-----CceEEeeecCCCCceeeccCC--------------CEEEEEECCCCeE
Confidence 67788776543332221 111233444455556666642 3488899876543
No 140
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.29 E-value=1.6 Score=45.27 Aligned_cols=134 Identities=15% Similarity=0.031 Sum_probs=68.9
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE---CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
.+.+||+.+.+....-... ... -.++... ++.+++.|+.+ ..+.+||+.+......-. ...
T Consensus 177 ~v~lwd~~~~~~~~~~~~h--~~~-v~~~~~~~~~~g~~l~sgs~D-----------g~v~~wd~~~~~~~~~~~--~h~ 240 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFHGH--GAD-VLCLDLAPSETGNTFVSGGCD-----------KKAMVWDMRSGQCVQAFE--THE 240 (354)
T ss_dssp EEEEEETTTCCEEEEEECC--SSC-EEEEEECCCSSCCEEEEEETT-----------SCEEEEETTTCCEEEEEC--CCS
T ss_pred cEEEEeCCCCeEEEEEcCC--CCC-eEEEEEEeCCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEec--CCC
Confidence 5778888877644221111 011 1112221 24677777753 347889998877543321 111
Q ss_pred CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecc
Q 005655 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (685)
Q Consensus 179 ~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~ 254 (685)
..-.++.+ ++.+++.|+.+ ..|.+||+.+..-..+-.. .....+...+.+ ++.+++.|+.
T Consensus 241 --~~v~~v~~~p~~~~l~s~s~D---------~~v~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~l~~g~~ 304 (354)
T 2pbi_B 241 --SDVNSVRYYPSGDAFASGSDD---------ATCRLYDLRADREVAIYSK-----ESIIFGASSVDFSLSGRLLFAGYN 304 (354)
T ss_dssp --SCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC-----TTCCSCEEEEEECTTSSEEEEEET
T ss_pred --CCeEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEcC-----CCcccceeEEEEeCCCCEEEEEEC
Confidence 11222333 56677777753 3578889877643322221 111222222222 6667777776
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
.+. +.+||+.+..
T Consensus 305 d~~----------------i~vwd~~~~~ 317 (354)
T 2pbi_B 305 DYT----------------INVWDVLKGS 317 (354)
T ss_dssp TSC----------------EEEEETTTCS
T ss_pred CCc----------------EEEEECCCCc
Confidence 654 7788875543
No 141
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=94.23 E-value=1.4 Score=45.60 Aligned_cols=197 Identities=11% Similarity=0.016 Sum_probs=96.0
Q ss_pred EEEEEcCeecCCCceeeeccEEEEEcCCCc-------EEEecCCCCCCCcceeEEEEE-C----C---EEEEEcCccCCC
Q 005655 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQE-------WKVISSPNSPPPRSAHQAVSW-K----N---YLYIFGGEFTSP 147 (685)
Q Consensus 83 ~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~-------W~~l~s~~~P~~R~~ha~v~~-~----~---~iyvfGG~~~s~ 147 (685)
.+++.|+. + +.+.+|++.+.. ...+.... .+ -.+++.. + + .+++.|+..
T Consensus 27 ~~l~s~~~--d-------g~i~iw~~~~~~~~~~~~~~~~~~~h~--~~--v~~~~~~~~~~~~g~~~~~l~s~~~d--- 90 (397)
T 1sq9_A 27 SFTVSCSG--D-------GYLKVWDNKLLDNENPKDKSYSHFVHK--SG--LHHVDVLQAIERDAFELCLVATTSFS--- 90 (397)
T ss_dssp SEEEEEET--T-------SEEEEEESBCCTTCCGGGGEEEEECCT--TC--EEEEEEEEEEETTTEEEEEEEEEETT---
T ss_pred CeEEEEcC--C-------CEEEEEECCCcccccCCCcceEEecCC--Cc--EEEEEEecccccCCccccEEEEEcCC---
Confidence 56777762 2 368889988876 44443211 11 2233333 3 5 777777753
Q ss_pred CCccccccCeEEEEECCCCc------EEEcccCCCCCC---CccceEEEE-----CCEE-EEEccccCCCCceeeeceEE
Q 005655 148 NQERFHHYKDFWMLDLKTNQ------WEQLNLKGCPSP---RSGHRMVLY-----KHKI-IVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~------W~~~~~~g~P~~---Rsgh~~v~~-----~~~l-yv~GG~~~~~~~~~~~~dv~ 212 (685)
..+.+||+.+.. +..+.. .+.. ..-.+++.. ++.+ ++.|+.. ..|.
T Consensus 91 --------g~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------g~i~ 151 (397)
T 1sq9_A 91 --------GDLLFYRITREDETKKVIFEKLDL--LDSDMKKHSFWALKWGASNDRLLSHRLVATDVK---------GTTY 151 (397)
T ss_dssp --------SCEEEEEEEECTTTCCEEEEEECC--SCTTGGGSCEEEEEEECCC----CEEEEEEETT---------SCEE
T ss_pred --------CCEEEEEccCCcccccccceeecc--cccccCCCcEEEEEEeeccCCCCceEEEEEeCC---------CcEE
Confidence 347778877766 666654 2211 112223333 3555 7777653 3567
Q ss_pred EEEcCC------Cc---eE---EeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeC
Q 005655 213 VFDLDQ------FK---WQ---EIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (685)
Q Consensus 213 ~yD~~t------~~---W~---~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (685)
+||+.+ .. |. .+.............-.++... ++ +++.|+..+. +.+||+
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~----------------i~i~d~ 214 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT----------------VQISEL 214 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE----------------EEEEET
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc----------------EEEEEC
Confidence 777655 21 11 1110000000111112233333 55 7777776554 788888
Q ss_pred CCceeEEeecCC--CCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 280 RTWEWSKVKKIG--MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 280 ~t~~W~~~~~~g--~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.+..-...-... ..+....-.++++. ++.+++.|+..+ -...|.+||+.+..
T Consensus 215 ~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-----------~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 215 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-----------SFGCITLYETEFGE 269 (397)
T ss_dssp TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-----------TEEEEEEEETTTCC
T ss_pred CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC-----------CCceEEEEECCCCc
Confidence 776544332210 00001122333333 567777777541 01359999988764
No 142
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=94.15 E-value=4.1 Score=41.92 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=36.5
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC-C-CCCccceEEEE--CCEEEEEccccCCCCceeeec
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-P-SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P-~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~ 209 (685)
++ +++.|+.. ..+.+||+.+......-.... . .....-.++.+ ++.+++.|+..+. ..
T Consensus 197 ~~-~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~------~g 258 (397)
T 1sq9_A 197 RG-LIATGFNN-----------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS------FG 258 (397)
T ss_dssp TS-EEEEECTT-----------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT------EE
T ss_pred Cc-eEEEEeCC-----------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC------Cc
Confidence 35 66666642 458899998775433222000 1 00122223333 5666777764310 25
Q ss_pred eEEEEEcCCCc
Q 005655 210 DLYVFDLDQFK 220 (685)
Q Consensus 210 dv~~yD~~t~~ 220 (685)
.|.+||+.+.+
T Consensus 259 ~i~i~d~~~~~ 269 (397)
T 1sq9_A 259 CITLYETEFGE 269 (397)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 78999988764
No 143
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.05 E-value=1.6 Score=50.57 Aligned_cols=111 Identities=11% Similarity=0.080 Sum_probs=65.2
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~ 159 (685)
++.|+|+||. .+-|++||+.++++..+.....+......+++.- ++.||+-. . +-+.
T Consensus 482 ~g~lWi~~~t---------~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~------------~Gl~ 539 (758)
T 3ott_A 482 EGNVWVLLYN---------NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-H------------GGVM 539 (758)
T ss_dssp TSCEEEEETT---------CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-T------------TEEE
T ss_pred CCCEEEEccC---------CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-c------------CceE
Confidence 5788887662 1358999999999998753221111112222222 47788642 1 3588
Q ss_pred EEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
+||+.++.+..+...++|.. .-++++.-++.|++-+. +-+.+||+.+.+.....
T Consensus 540 ~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t~-----------~Gl~~~~~~~~~~~~~~ 593 (758)
T 3ott_A 540 RINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVSTT-----------NGLWIIDRKTMDARQQN 593 (758)
T ss_dssp EECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEES-----------SCEEEEETTTCCEEEC-
T ss_pred EEecCCCceEEecccCCCcc-ceEEEEECCCCEEEECC-----------CCeEEEcCCCceeEEec
Confidence 99999888876654344532 23344445788887542 45899999988876543
No 144
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.04 E-value=0.74 Score=46.52 Aligned_cols=143 Identities=10% Similarity=0.037 Sum_probs=70.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~ 149 (685)
.++.+.| ++.+++.|+. + ..+.+||..+..-. .+.... .+ -.+++.. ++.+++.|+..
T Consensus 17 ~~~~fsp--~~~~l~s~~~--d-------g~v~lWd~~~~~~~~~~~~~~--~~--v~~~~~~~~~~~l~s~s~d----- 76 (304)
T 2ynn_A 17 KGIDFHP--TEPWVLTTLY--S-------GRVELWNYETQVEVRSIQVTE--TP--VRAGKFIARKNWIIVGSDD----- 76 (304)
T ss_dssp EEEEECS--SSSEEEEEET--T-------SEEEEEETTTTEEEEEEECCS--SC--EEEEEEEGGGTEEEEEETT-----
T ss_pred EEEEECC--CCCEEEEEcC--C-------CcEEEEECCCCceeEEeeccC--Cc--EEEEEEeCCCCEEEEECCC-----
Confidence 3455666 5677777772 2 35788898887543 222211 11 1222233 45566666642
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
..+.+||+.++.-...-. +.+ ..-.+++.. ++.+++.|+.+ ..|.+||+.+.. .......
T Consensus 77 ------~~i~vwd~~~~~~~~~~~-~h~--~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~~~~-~~~~~~~ 137 (304)
T 2ynn_A 77 ------FRIRVFNYNTGEKVVDFE-AHP--DYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENNW-ALEQTFE 137 (304)
T ss_dssp ------SEEEEEETTTCCEEEEEE-CCS--SCEEEEEECSSSSEEEEEETT---------SCEEEEEGGGTT-EEEEEEC
T ss_pred ------CEEEEEECCCCcEEEEEe-CCC--CcEEEEEEcCCCCEEEEECCC---------CeEEEEECCCCc-chhhhhc
Confidence 357888988775332111 011 111122222 45666677653 357788876542 2221111
Q ss_pred CCCCCCCccceeEEEe--CCEEEEEecccCC
Q 005655 229 GSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~ 257 (685)
.....-.+++.. ++.+++.|+.++.
T Consensus 138 ----~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 138 ----GHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp ----CCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred ----ccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 011111222222 4567888887765
No 145
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.03 E-value=1.9 Score=44.06 Aligned_cols=158 Identities=9% Similarity=0.116 Sum_probs=78.3
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCC--CcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeec
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t--~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~ 209 (685)
++.+++.|+.+ ..+.+||+.. ..+..+.. +......-..+.+ ++.+++.||.+ .
T Consensus 118 ~g~~las~s~D-----------~~v~iwd~~~~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D---------~ 175 (330)
T 2hes_X 118 DGYYLATCSRD-----------KSVWIWETDESGEEYECISV--LQEHSQDVKHVIWHPSEALLASSSYD---------D 175 (330)
T ss_dssp TSCEEEEEETT-----------SCEEEEECCTTCCCCEEEEE--ECCCSSCEEEEEECSSSSEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CEEEEEeccCCCCCeEEEEE--eccCCCceEEEEECCCCCEEEEEcCC---------C
Confidence 46667777653 3477788743 34444332 1111111223333 45677777754 3
Q ss_pred eEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-C--CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC------
Q 005655 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-Q--DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------ 280 (685)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~--~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------ 280 (685)
.|.+||+.+..|..+...... ..+. .++... + +.+++.|+.++. +.++|+.
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~h--~~~v--~~~~~~~~~~~~~l~s~s~D~~----------------v~iw~~~~~~~~~ 235 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNGH--EGTV--WSSDFDKTEGVFRLCSGSDDST----------------VRVWKYMGDDEDD 235 (330)
T ss_dssp CEEEEEEETTEEEEEEEECCC--SSCE--EEEEECCSSSSCEEEEEETTSC----------------EEEEEEEEECTTS
T ss_pred eEEEEECCCCCeeEEEEccCC--CCcE--EEEEecCCCCeeEEEEEeCCCe----------------EEEEEecCCCccc
Confidence 567777777767665544211 1111 122222 2 345667776654 3333332
Q ss_pred CceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 281 TWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 281 t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
...|..+..... .....-.+++...+.+++.||.. ..|.+||+.+..|..+..
T Consensus 236 ~~~~~~~~~~~~-~h~~~v~~v~~s~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~ 288 (330)
T 2hes_X 236 QQEWVCEAILPD-VHKRQVYNVAWGFNGLIASVGAD--------------GVLAVYEEVDGEWKVFAK 288 (330)
T ss_dssp CEEEEEEEECCS-CCSSCEEEEEECTTSCEEEEETT--------------SCEEEEEEETTEEEEEEE
T ss_pred cceeEEeeeccc-ccccceEEEEEcCCCEEEEEeCC--------------CEEEEEEcCCCceEEEec
Confidence 234555443211 01222334444455566666643 348889988888866543
No 146
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.02 E-value=2.2 Score=42.95 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=58.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc----EEEecCCCCCCCcceeEEEEE-CCE-EEEEcCccC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE----WKVISSPNSPPPRSAHQAVSW-KNY-LYIFGGEFT 145 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~----W~~l~s~~~P~~R~~ha~v~~-~~~-iyvfGG~~~ 145 (685)
.++...| ++.+++.|+. + +.+.+|++.+.. ...+.. ....-.+++.. ++. +++.|+..
T Consensus 15 ~~~~~s~--~~~~l~~~~~--d-------~~v~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d- 78 (342)
T 1yfq_A 15 SDIKIIP--SKSLLLITSW--D-------GSLTVYKFDIQAKNVDLLQSLR----YKHPLLCCNFIDNTDLQIYVGTVQ- 78 (342)
T ss_dssp EEEEEEG--GGTEEEEEET--T-------SEEEEEEEETTTTEEEEEEEEE----CSSCEEEEEEEESSSEEEEEEETT-
T ss_pred EEEEEcC--CCCEEEEEcC--C-------CeEEEEEeCCCCccccceeeee----cCCceEEEEECCCCCcEEEEEcCC-
Confidence 4455565 4566677762 2 357788877765 333321 11222333333 566 66777643
Q ss_pred CCCCccccccCeEEEEEC-CCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 146 SPNQERFHHYKDFWMLDL-KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 146 s~~~~~~~~~~dv~~yD~-~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
..+.+||+ .+.....+... +....-.+++...+.+++.|+.. ..+.+||+.+
T Consensus 79 ----------g~i~~wd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~l~s~~~d---------~~i~iwd~~~ 131 (342)
T 1yfq_A 79 ----------GEILKVDLIGSPSFQALTNN--EANLGICRICKYGDDKLIAASWD---------GLIEVIDPRN 131 (342)
T ss_dssp ----------SCEEEECSSSSSSEEECBSC--CCCSCEEEEEEETTTEEEEEETT---------SEEEEECHHH
T ss_pred ----------CeEEEEEeccCCceEecccc--CCCCceEEEEeCCCCEEEEEcCC---------CeEEEEcccc
Confidence 35888999 88876555431 11111222333335566666643 3577777654
No 147
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=93.93 E-value=6.6 Score=44.82 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=81.1
Q ss_pred cCeEEEEECCC------C--cEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC---ceEE
Q 005655 155 YKDFWMLDLKT------N--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQE 223 (685)
Q Consensus 155 ~~dv~~yD~~t------~--~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~---~W~~ 223 (685)
.+.+|++|+.+ . .+..+... .... .......++.||+.+.... ....|+++|+.+. .|..
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~--~~~~-~~~~s~dg~~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDN--FEGE-YDYVTNEGTVFTFKTNRHS------PNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECS--SSSC-EEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEE
T ss_pred ccEEEEEECcccccccCCccceEEeeCC--CCcE-EEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCccccee
Confidence 36899999976 4 58777651 1111 1122233678888765422 1357999999875 5888
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce-eEEeecCCCCCCCcceeE
Q 005655 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVKKIGMPPGPRAGFS 301 (685)
Q Consensus 224 v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~~~~~g~~P~~R~g~s 301 (685)
+... .....-..++.. ++.|++...... ...++++++.+.. ...+.. | .+..
T Consensus 329 l~~~-----~~~~~~~~~~~~~~~~lv~~~~~~g--------------~~~l~~~~~~~g~~~~~l~~----~---~~~v 382 (710)
T 2xdw_A 329 LVPE-----HEKDVLEWVACVRSNFLVLCYLHDV--------------KNTLQLHDLATGALLKIFPL----E---VGSV 382 (710)
T ss_dssp EECC-----CSSCEEEEEEEETTTEEEEEEEETT--------------EEEEEEEETTTCCEEEEECC----C---SSEE
T ss_pred ccCC-----CCCCeEEEEEEEcCCEEEEEEEECC--------------EEEEEEEECCCCCEEEecCC----C---CceE
Confidence 7654 111122234444 777777665432 2458899985443 444431 2 1221
Q ss_pred E-EEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCc--EEEEEe
Q 005655 302 M-CVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLEL 348 (685)
Q Consensus 302 ~-~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~~l~~ 348 (685)
. +.. ++..++|..... ..-..+|.||+.++. +..+..
T Consensus 383 ~~~~~s~d~~~l~~~~ss~----------~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 383 VGYSGQKKDTEIFYQFTSF----------LSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp EEEECCTTCSEEEEEEECS----------SCCCEEEEEETTSSSCCCEEEEE
T ss_pred EEEecCCCCCEEEEEEeCC----------CCCCEEEEEECCCCccceEEeee
Confidence 1 222 333333332211 124579999998877 665554
No 148
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=93.88 E-value=1.6 Score=46.27 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=55.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
+.|+++|..+++...+-... .....-.++.+ ++.+++.|+.+ ..+.+||+.++.-..... ...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~fspdg~~lasgs~D-----------g~v~iWd~~~~~~~~~~~--~h~ 189 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMT--SHS 189 (420)
T ss_dssp TEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS
T ss_pred CEEEEEECCCCCEEEEEEec--CCCCcEEEEEECCCCCEEEEEECC-----------CeEEEEEcCCCcEEEEEe--CCC
Confidence 46999999998876543322 11112233333 46777777753 348889998876433222 122
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
. ...++.+++.+++.|+.. ..+..+|......
T Consensus 190 ~--~v~~~s~~~~~l~sgs~d---------~~i~~~d~~~~~~ 221 (420)
T 4gga_A 190 A--RVGSLSWNSYILSSGSRS---------GHIHHHDVRVAEH 221 (420)
T ss_dssp S--CEEEEEEETTEEEEEETT---------SEEEEEETTSSSC
T ss_pred C--ceEEEeeCCCEEEEEeCC---------CceeEeeecccce
Confidence 2 233455677777777753 3567777765443
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=93.85 E-value=1.4 Score=50.34 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=70.0
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCC----------------c----ce
Q 005655 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP----------------R----SA 127 (685)
Q Consensus 68 ~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~----------------R----~~ 127 (685)
.+.-.++...| +++.+++++.. ++.. ....++++|+.+++...+.......+ | ..
T Consensus 36 ~~~~~~~~~Sp--dG~~la~~~~~-d~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAP--DGSRVTFLRGK-DSDR--NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCCEEEEECT--TSSEEEEEECC-SSCT--TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEE
T ss_pred CCCCCCceEec--CCCEEEEEecc-CCCC--cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccC
Confidence 33445566666 66666666531 2211 13479999999998887654321110 0 01
Q ss_pred eEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCC---cEEEcccCCCCCCCccceEEEE--CCEEEEEccccC
Q 005655 128 HQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYD 200 (685)
Q Consensus 128 ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~---~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~ 200 (685)
...+.+ +++.+++++. ..+|++|+.++ .-..+.. ... ....+.+ +++.++|+..
T Consensus 111 v~~~~~SpDg~~l~~~~~------------~~i~~~d~~~~~~~~~~~l~~---~~~--~~~~~~~SPDG~~la~~~~-- 171 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG------------GELYLYDLKQEGKAAVRQLTH---GEG--FATDAKLSPKGGFVSFIRG-- 171 (741)
T ss_dssp SCCCEECTTSSEEEEEET------------TEEEEEESSSCSTTSCCBCCC---SSS--CEEEEEECTTSSEEEEEET--
T ss_pred cceeEECCCCCEEEEEeC------------CcEEEEECCCCCcceEEEccc---CCc--ccccccCCCCCCEEEEEeC--
Confidence 112222 4555555442 57999999887 5443332 111 1223333 5655555531
Q ss_pred CCCceeeeceEEEEEcCCCceEEeccC
Q 005655 201 TLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
+.|+++|+.+.....+...
T Consensus 172 --------~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 172 --------RNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp --------TEEEEEETTTTEEEECCCC
T ss_pred --------CcEEEEecCCCCEEEeccC
Confidence 3799999998877766543
No 150
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.80 E-value=2.5 Score=42.42 Aligned_cols=154 Identities=8% Similarity=0.004 Sum_probs=72.5
Q ss_pred ccEEEEEcCCCcEEEecCCCC--CCCcceeEEEEECCEEEEEcCccCCCCC-ccccccCeEEEEECCCCcEEEcccCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNS--PPPRSAHQAVSWKNYLYIFGGEFTSPNQ-ERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~--P~~R~~ha~v~~~~~iyvfGG~~~s~~~-~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (685)
+.|++||+.+++++.+..... |..|....++.-++.||+.. ....... ........+|+|++. .....+... ..
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~-~~ 149 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ-VD 149 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE-ES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECC-CCEEEEeec-cc
Confidence 368999999998887654321 22222222222257777642 1111000 000123468899875 343333221 11
Q ss_pred CCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEc--CCCceEEeccCCCCCCCC-CccceeEEEe-CCEEEEE
Q 005655 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPS-PRSGFQFFVY-QDEVFLY 251 (685)
Q Consensus 178 ~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~-~Rs~~s~~~~-~~~Iyv~ 251 (685)
.-.+++.. ++.||+.... .+.|++|++ .+.......... ..+. ...-.++++. ++.||+.
T Consensus 150 ---~pngi~~spdg~~lyv~~~~---------~~~i~~~~~d~~~G~~~~~~~~~--~~~~~~~~p~g~~~d~~G~lwva 215 (297)
T 3g4e_A 150 ---ISNGLDWSLDHKIFYYIDSL---------SYSVDAFDYDLQTGQISNRRSVY--KLEKEEQIPDGMCIDAEGKLWVA 215 (297)
T ss_dssp ---BEEEEEECTTSCEEEEEEGG---------GTEEEEEEECTTTCCEEEEEEEE--ECCGGGCEEEEEEEBTTSCEEEE
T ss_pred ---cccceEEcCCCCEEEEecCC---------CCcEEEEeccCCCCcccCcEEEE--ECCCCCCCCCeeEECCCCCEEEE
Confidence 11233333 3468877543 356888876 454432211100 0010 1111234443 6678776
Q ss_pred ecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe
Q 005655 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
..... .+++||+.+.+....
T Consensus 216 ~~~~~----------------~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 216 CYNGG----------------RVIRLDPVTGKRLQT 235 (297)
T ss_dssp EETTT----------------EEEEECTTTCCEEEE
T ss_pred EcCCC----------------EEEEEcCCCceEEEE
Confidence 53322 288999986654443
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=93.78 E-value=3.4 Score=41.57 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=40.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.+|+.++. -+.|+++|+.+++....... +.....+.+++. + ..+|+.+.. ...+
T Consensus 10 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~-----------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY---------PNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNH-----------YGDI 67 (349)
T ss_dssp TCEEEEEEET---------TTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETT-----------TTEE
T ss_pred CCEEEEEeCC---------CCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeCC-----------CCcE
Confidence 5778887762 24789999998876533221 110012334443 3 467877642 2569
Q ss_pred EEEECCCCcEEE
Q 005655 159 WMLDLKTNQWEQ 170 (685)
Q Consensus 159 ~~yD~~t~~W~~ 170 (685)
++||+.++....
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999999887553
No 152
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=93.78 E-value=1.6 Score=42.39 Aligned_cols=151 Identities=16% Similarity=0.266 Sum_probs=80.7
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEE--ccc--CCCCCCCccceEEEE--CCEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ--LNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~--~~~--~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~ 202 (685)
|++...+.+|+|=| +.+|+++.....+.. +.. .++|. ... ++... ++.||+|-|
T Consensus 28 Ai~~~~g~~y~Fkg-------------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG----- 87 (207)
T 1pex_A 28 AITSLRGETMIFKD-------------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG----- 87 (207)
T ss_dssp EEEEETTEEEEEET-------------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-----
T ss_pred EEEeCCCcEEEEEC-------------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-----
Confidence 45556899999977 458888875544432 211 22342 222 33333 589999987
Q ss_pred CceeeeceEEEEEcCCCce---EEeccCCCCCCCCCccceeEEE-e--CCEEEEEecccCCCCcccCCCCCCceeeeEEE
Q 005655 203 REVRYYNDLYVFDLDQFKW---QEIKPRFGSMWPSPRSGFQFFV-Y--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W---~~v~~~~~~~~P~~Rs~~s~~~-~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
+.+|+|+-.+-.- ..|... .+|.....--+++ . ++++|+|-|. ..|+
T Consensus 88 ------~~~w~~~~~~~~~gyPk~I~~~---GlP~~~~~IDAA~~~~~~gk~yfFkG~------------------~ywr 140 (207)
T 1pex_A 88 ------RKFWALNGYDILEGYPKKISEL---GLPKEVKKISAAVHFEDTGKTLLFSGN------------------QVWR 140 (207)
T ss_dssp ------TEEEEESTTCCCTTCSEESTTT---TCCTTCCCCCEEEECTTTSEEEEEETT------------------EEEE
T ss_pred ------CEEEEEeCCeeccCCceecccc---CCCCCCccccEEEEeCCCCEEEEEeCC------------------EEEE
Confidence 3567776332111 112111 1232111222232 2 5899999763 3789
Q ss_pred EeCCCceeEE-----eec--CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 277 LDPRTWEWSK-----VKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 277 yd~~t~~W~~-----~~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
||..+.+-.. +.. .|. |. +. .++...++.+|+|-|. ..|.||..+++=..
T Consensus 141 ~d~~~~~~d~gyPr~i~~~~~Gi-p~-~i-DaAf~~~g~~YfFkg~----------------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 141 YDDTNHIMDKDYPRLIEEDFPGI-GD-KV-DAVYEKNGYIYFFNGP----------------IQFEYSIWSNRIVR 197 (207)
T ss_dssp EETTTTEECSSCCCBHHHHSTTS-CS-CC-SEEEEETTEEEEEETT----------------EEEEEETTTTEEEE
T ss_pred EeCcCccccCCCCccHHHcCCCC-CC-Cc-cEEEEcCCcEEEEECC----------------EEEEEeCCccEEec
Confidence 9976543110 000 111 21 12 2333468999999774 38899987765443
No 153
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=93.77 E-value=1.1 Score=46.22 Aligned_cols=110 Identities=8% Similarity=-0.066 Sum_probs=52.3
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (685)
++..++.|+.+ ..+.+||+.+..-.................+......+..+++++..+
T Consensus 256 ~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 314 (408)
T 4a11_B 256 DGLHLLTVGTD---------NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS------------ 314 (408)
T ss_dssp TSSEEEEEETT---------SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT------------
T ss_pred CCCEEEEecCC---------CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC------------
Confidence 45566666643 358899988765332221110000111111122222334444554433
Q ss_pred ceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
.+.+||..+..-...-. .....-.++++. ++.+++.||.. ..|.+||+.+.
T Consensus 315 ----~i~v~d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~iw~~~~~ 366 (408)
T 4a11_B 315 ----TIAVYTVYSGEQITMLK----GHYKTVDCCVFQSNFQELYSGSRD--------------CNILAWVPSLY 366 (408)
T ss_dssp ----EEEEEETTTCCEEEEEC----CCSSCEEEEEEETTTTEEEEEETT--------------SCEEEEEECC-
T ss_pred ----EEEEEECcCCcceeeec----cCCCeEEEEEEcCCCCEEEEECCC--------------CeEEEEeCCCC
Confidence 37788876654333221 111112334444 56777777753 34888888764
No 154
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.76 E-value=0.91 Score=48.49 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=46.7
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.|.+||+.++....+..... ......++... ++.+++.|+.. ..+.+||+.+..-..+.. -.
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d-----------g~i~~wd~~~~~~~~~~~-----h~ 250 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDT-INIWFCSLDVSASSRMVVTGDNV-----------GNVILLNMDGKELWNLRM-----HK 250 (435)
T ss_dssp CEEEEETTSCEEEEEECCSS-CSCCCCCEEEETTTTEEEEECSS-----------SBEEEEESSSCBCCCSBC-----CS
T ss_pred EEEEeeccCCceeEEeccCC-CCccEEEEEECCCCCEEEEEeCC-----------CcEeeeccCcceeEEEec-----cc
Confidence 36677877776665544321 11112233333 56677777753 347788876543211111 11
Q ss_pred ccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 181 SGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 181 sgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
..-.++.+ +..+++.|+.+ ..|.+||+.+..
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d---------~~v~iwd~~~~~ 284 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVD---------QTVKIWDLRQVR 284 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETT---------SBCCEEETTTCC
T ss_pred ceEEeeeecCCCceEEEEecCc---------ceeeEEeccccc
Confidence 11122333 34567777753 346678876543
No 155
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=93.73 E-value=2.4 Score=44.84 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=35.8
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++..++.||.. ..+.+||+.++.....-. .......++.+ ++.+++.|+.+ ..|
T Consensus 203 ~~~~l~s~s~D-----------~~i~~wd~~~~~~~~~~~----~h~~~v~~~~~~~~g~~l~s~s~D---------~~v 258 (410)
T 1vyh_C 203 NGDHIVSASRD-----------KTIKMWEVQTGYCVKTFT----GHREWVRMVRPNQDGTLIASCSND---------QTV 258 (410)
T ss_dssp SSSEEEEEETT-----------SEEEEEETTTCCEEEEEE----CCSSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEe----CCCccEEEEEECCCCCEEEEEcCC---------CeE
Confidence 45566677643 457889988776432211 11111222333 56677777753 357
Q ss_pred EEEEcCCCceE
Q 005655 212 YVFDLDQFKWQ 222 (685)
Q Consensus 212 ~~yD~~t~~W~ 222 (685)
.+||+.+....
T Consensus 259 ~vwd~~~~~~~ 269 (410)
T 1vyh_C 259 RVWVVATKECK 269 (410)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcee
Confidence 77887766543
No 156
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=93.70 E-value=1.4 Score=44.60 Aligned_cols=187 Identities=13% Similarity=0.094 Sum_probs=90.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC----CEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK----NYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~----~~iyvfGG~~~s~ 147 (685)
.++...|. +..|++.|+.. .+ -+.+.+||+.++....+.... ....-.+++... +.+++.|+..
T Consensus 22 ~~~~~~p~-~~~l~~~~s~~-~~-----d~~v~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~d--- 89 (357)
T 3i2n_A 22 FDCKWVPC-SAKFVTMGNFA-RG-----TGVIQLYEIQHGDLKLLREIE--KAKPIKCGTFGATSLQQRYLATGDFG--- 89 (357)
T ss_dssp EEEEECTT-SSEEEEEEC---CC-----CEEEEEEEECSSSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEEEETT---
T ss_pred EEEEEcCC-CceEEEecCcc-CC-----CcEEEEEeCCCCcccceeeec--ccCcEEEEEEcCCCCCCceEEEecCC---
Confidence 34556652 34677777520 01 136888999888765442211 111112222222 3677777643
Q ss_pred CCccccccCeEEEEECCCCc--EEEcccCCCCCCCccceEEE-------ECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 148 NQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVL-------YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~-------~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
..+.+||+.+.. -..+.. ...+ -.++.. -++.+++.|+.+ ..+.+||+.+
T Consensus 90 --------g~i~iwd~~~~~~~~~~~~~--~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d---------~~i~vwd~~~ 148 (357)
T 3i2n_A 90 --------GNLHIWNLEAPEMPVYSVKG--HKEI--INAIDGIGGLGIGEGAPEIVTGSRD---------GTVKVWDPRQ 148 (357)
T ss_dssp --------SCEEEECTTSCSSCSEEECC--CSSC--EEEEEEESGGGCC-CCCEEEEEETT---------SCEEEECTTS
T ss_pred --------CeEEEEeCCCCCccEEEEEe--cccc--eEEEeeccccccCCCccEEEEEeCC---------CeEEEEeCCC
Confidence 347788887664 222211 1111 111111 145566666643 3688888887
Q ss_pred Cc--eEEeccCCCCCCCCCccceeEE----E-eCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC
Q 005655 219 FK--WQEIKPRFGSMWPSPRSGFQFF----V-YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (685)
Q Consensus 219 ~~--W~~v~~~~~~~~P~~Rs~~s~~----~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g 291 (685)
.. ...+..... ...+.-.+++ . .++.+++.|+..+. +.+||+.+..-......
T Consensus 149 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~- 208 (357)
T 3i2n_A 149 KDDPVANMEPVQG---ENKRDCWTVAFGNAYNQEERVVCAGYDNGD----------------IKLFDLRNMALRWETNI- 208 (357)
T ss_dssp CSSCSEEECCCTT---SCCCCEEEEEEECCCC-CCCEEEEEETTSE----------------EEEEETTTTEEEEEEEC-
T ss_pred CCCcceeccccCC---CCCCceEEEEEEeccCCCCCEEEEEccCCe----------------EEEEECccCceeeecCC-
Confidence 54 344433211 1111222222 1 26667777766544 77888877654333221
Q ss_pred CCCCCcceeEEEEE----CCeEEEecce
Q 005655 292 MPPGPRAGFSMCVH----KKRALLFGGV 315 (685)
Q Consensus 292 ~~P~~R~g~s~~~~----~~~iyvfGG~ 315 (685)
...-.++++. ++..++.|+.
T Consensus 209 ----~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 209 ----KNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp ----SSCEEEEEESCSSSSCCEEEEEES
T ss_pred ----CCceEEEEcCCCCCCCCEEEEECC
Confidence 1222344444 4566666654
No 157
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=93.69 E-value=0.76 Score=52.63 Aligned_cols=174 Identities=15% Similarity=0.164 Sum_probs=88.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC---cEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ---EWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~---~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
.++...| +++.++|++. ..++++|+.++ ....+.... ..-..++.. +++.++|+..
T Consensus 112 ~~~~~Sp--Dg~~l~~~~~----------~~i~~~d~~~~~~~~~~~l~~~~----~~~~~~~~SPDG~~la~~~~---- 171 (741)
T 2ecf_A 112 VDYQWSP--DAQRLLFPLG----------GELYLYDLKQEGKAAVRQLTHGE----GFATDAKLSPKGGFVSFIRG---- 171 (741)
T ss_dssp CCCEECT--TSSEEEEEET----------TEEEEEESSSCSTTSCCBCCCSS----SCEEEEEECTTSSEEEEEET----
T ss_pred ceeEECC--CCCEEEEEeC----------CcEEEEECCCCCcceEEEcccCC----cccccccCCCCCCEEEEEeC----
Confidence 3445566 5666666652 57999999887 554443321 111222222 4555555431
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCcc------------ceEEEE--CCEEEEEccccCCCCc---------
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG------------HRMVLY--KHKIIVFGGFYDTLRE--------- 204 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsg------------h~~v~~--~~~lyv~GG~~~~~~~--------- 204 (685)
+.++++|+.++....+...+...-..+ ...+.| +++.++++........
T Consensus 172 --------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p 243 (741)
T 2ecf_A 172 --------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYA 243 (741)
T ss_dssp --------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECS
T ss_pred --------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCC
Confidence 369999999988877755221100000 122334 4554555443321100
Q ss_pred ---------------eeeeceEEEEEcCC-CceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCC
Q 005655 205 ---------------VRYYNDLYVFDLDQ-FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268 (685)
Q Consensus 205 ---------------~~~~~dv~~yD~~t-~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (685)
......|+++|+.+ .+-..+..... ........+. ..+..|++......
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~-pDg~~l~~~~~~~~------------ 308 (741)
T 2ecf_A 244 DRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKE--QDIYLARVNW-RDPQHLSFQRQSRD------------ 308 (741)
T ss_dssp SCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSC--SSEEEEEEEE-EETTEEEEEEEETT------------
T ss_pred CcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCC--cceEEEEEEe-CCCCEEEEEEeccc------------
Confidence 00123789999988 77655543200 0111122233 33455555443221
Q ss_pred ceeeeEEEEeCCCceeEEee
Q 005655 269 IIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~~~ 288 (685)
.....++++|+.+.....+.
T Consensus 309 ~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 309 QKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp SSEEEEEEEETTTCCEEEEE
T ss_pred CCeEEEEEEECCCCceEEEE
Confidence 12457999999888776654
No 158
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=93.52 E-value=9.1 Score=40.68 Aligned_cols=208 Identities=10% Similarity=0.055 Sum_probs=109.9
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
+.+++.+ ++.||+.... -+.+++||+.++.-..+.... ...+ +++. ++.||+......
T Consensus 134 ~~la~d~--~g~lyv~d~~---------~~~I~~id~~~g~~~~~~~~~----~~~~-ia~~~~g~~l~~~d~~~~---- 193 (409)
T 3hrp_A 134 WGIAAVG--NNTVLAYQRD---------DPRVRLISVDDNKVTTVHPGF----KGGK-PAVTKDKQRVYSIGWEGT---- 193 (409)
T ss_dssp EEEEECS--TTEEEEEETT---------TTEEEEEETTTTEEEEEEETC----CBCB-CEECTTSSEEEEEBSSTT----
T ss_pred eEEEEeC--CCCEEEEecC---------CCcEEEEECCCCEEEEeeccC----CCCc-eeEecCCCcEEEEecCCC----
Confidence 4555555 6788888751 146899999988776554321 1223 3333 356777654211
Q ss_pred ccccccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 150 ERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
..+++|++.+.. ...+.....+....-+++++. ++.||+..+ ...|++||+.+.....+..
T Consensus 194 ------~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----------~~~I~~~d~~~~~~~~~~~ 257 (409)
T 3hrp_A 194 ------HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----------NKNFGRFNVKTQEVTLIKQ 257 (409)
T ss_dssp ------CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----------TCEEEEEETTTCCEEEEEE
T ss_pred ------ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----------CCcEEEEECCCCCEEEEec
Confidence 268999987553 233311101012222334444 578998322 2469999998877655522
Q ss_pred CCC--CCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC-------
Q 005655 227 RFG--SMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG------- 295 (685)
Q Consensus 227 ~~~--~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~------- 295 (685)
... .....|+. .+++. ++.||+..... +.+++|++.... ..+...+..+.
T Consensus 258 ~~~~g~~~~~P~~--~ia~~p~~g~lyv~d~~~----------------~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~ 318 (409)
T 3hrp_A 258 LELSGSLGTNPGP--YLIYYFVDSNFYMSDQNL----------------SSVYKITPDGEC-EWFCGSATQKTVQDGLRE 318 (409)
T ss_dssp CCCCSCCCCSSCC--EEEEETTTTEEEEEETTT----------------TEEEEECTTCCE-EEEEECTTCCSCBCEEGG
T ss_pred ccccCCCCCCccc--cEEEeCCCCEEEEEeCCC----------------CEEEEEecCCCE-EEEEeCCCCCCcCCCccc
Confidence 210 00011121 44444 68899875433 238888876552 22221110000
Q ss_pred -C--cceeEEEEE-CCeEEEecc-eecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 296 -P--RAGFSMCVH-KKRALLFGG-VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 296 -~--R~g~s~~~~-~~~iyvfGG-~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
. ..-.++++. ++.||+... . .+.|.+|++.+.....+..
T Consensus 319 ~~~~~~P~gia~d~dG~lyvad~~~--------------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 319 EALFAQPNGMTVDEDGNFYIVDGFK--------------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp GCBCSSEEEEEECTTCCEEEEETTT--------------TCEEEEEETTTTEEEEEEE
T ss_pred ccEeCCCeEEEEeCCCCEEEEeCCC--------------CCEEEEEECCCCEEEEEeC
Confidence 0 112344444 567888753 2 2459999977777665554
No 159
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=93.50 E-value=0.99 Score=45.37 Aligned_cols=113 Identities=7% Similarity=0.085 Sum_probs=56.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC---CEEEEEcCccCCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK---NYLYIFGGEFTSPNQ 149 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~---~~iyvfGG~~~s~~~ 149 (685)
++++.| ++.+++.||. + +.+.+||+.......+..... ....-.+++... +.+++.|+.+
T Consensus 14 ~~~~s~--~g~~las~s~--D-------~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s~D----- 76 (297)
T 2pm7_B 14 DAVMDY--YGKRMATCSS--D-------KTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYD----- 76 (297)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred EEEECC--CCCEEEEEeC--C-------CEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEEcCC-----
Confidence 344555 5777777773 2 357788876543221111100 011112222221 5677777753
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEEC----CEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK----HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~----~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
..+.++|+.++.|..+... ......-.++.+. +.+++.|+.+ ..|.+||+.+.
T Consensus 77 ------~~v~iWd~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~~ 133 (297)
T 2pm7_B 77 ------GKVMIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKEN 133 (297)
T ss_dssp ------TEEEEEEBSSSCBCCCEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCSS
T ss_pred ------CEEEEEEcCCCceEEEEEe--ecCCCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecCC
Confidence 3577889888777554331 1111122333442 4566677653 35677777654
No 160
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=93.49 E-value=2.1 Score=47.10 Aligned_cols=197 Identities=7% Similarity=-0.011 Sum_probs=93.6
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC----c-EEEecCCCCCCCcc-eeEEEEE---CCEEEEEc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ----E-WKVISSPNSPPPRS-AHQAVSW---KNYLYIFG 141 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~----~-W~~l~s~~~P~~R~-~ha~v~~---~~~iyvfG 141 (685)
-.++.+.| ++.++++|+ + +.+.+||+.+. . -..+... ... -.+++.. ++.+++.|
T Consensus 21 v~~~~~sp--dg~~l~~~~---~-------~~v~v~~~~~~~~~~~~~~~~~~h----~~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 21 TTHLSYDP--TTNAIAYPC---G-------KSAFVRCLDDGDSKVPPVVQFTGH----GSSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCCCEEET--TTTEEEEEE---T-------TEEEEEECCSSCCSSCSEEEECTT----TTSCEEEEEECSSTTCCEEEEE
T ss_pred eeEEEECC--CCCEEEEec---C-------CeEEEEECCCCCCccccceEEecC----CCceEEEEEECcCCCCCEEEEe
Confidence 34566666 567777776 1 25888998866 3 3333221 111 1223332 45677777
Q ss_pred CccCCCCCccccccCeEEEEECCCC------cEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEE
Q 005655 142 GEFTSPNQERFHHYKDFWMLDLKTN------QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 142 G~~~s~~~~~~~~~~dv~~yD~~t~------~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
+.. ..+.+||+.+. ....+.. ..........+.+ ++..++.+|.... ....++.
T Consensus 85 ~~d-----------g~v~vw~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~-----~~~~v~~ 146 (615)
T 1pgu_A 85 DES-----------GKVIVWGWTFDKESNSVEVNVKSE--FQVLAGPISDISWDFEGRRLCVVGEGRD-----NFGVFIS 146 (615)
T ss_dssp ETT-----------SEEEEEEEEEEGGGTEEEEEEEEE--EECCSSCEEEEEECTTSSEEEEEECCSS-----CSEEEEE
T ss_pred cCC-----------CEEEEEeCCCCcccccccccccch--hhcccccEEEEEEeCCCCEEEEeccCCC-----CccEEEE
Confidence 652 34667777544 3333222 1111111222233 4556666664321 1345777
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEEe-CC-EEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC
Q 005655 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (685)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g 291 (685)
||... .+.... .....-.++... ++ .+++.|+..+. +.+||+.+.+-...-..
T Consensus 147 ~d~~~----~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~----------------v~vwd~~~~~~~~~~~~- 201 (615)
T 1pgu_A 147 WDSGN----SLGEVS----GHSQRINACHLKQSRPMRSMTVGDDGS----------------VVFYQGPPFKFSASDRT- 201 (615)
T ss_dssp TTTCC----EEEECC----SCSSCEEEEEECSSSSCEEEEEETTTE----------------EEEEETTTBEEEEEECS-
T ss_pred EECCC----cceeee----cCCccEEEEEECCCCCcEEEEEeCCCc----------------EEEEeCCCcceeeeecc-
Confidence 76322 121111 011111222222 33 37777776654 77788776554333211
Q ss_pred CCCCCc---ceeEEEEE-C-CeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 292 MPPGPR---AGFSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 292 ~~P~~R---~g~s~~~~-~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
... .-.++++. + +..++.|+.. ..|.+||+.+...
T Consensus 202 ---~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~vwd~~~~~~ 241 (615)
T 1pgu_A 202 ---HHKQGSFVRDVEFSPDSGEFVITVGSD--------------RKISCFDGKSGEF 241 (615)
T ss_dssp ---SSCTTCCEEEEEECSTTCCEEEEEETT--------------CCEEEEETTTCCE
T ss_pred ---cCCCCceEEEEEECCCCCCEEEEEeCC--------------CeEEEEECCCCCE
Confidence 111 22333443 4 6677777653 3477777766543
No 161
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.47 E-value=5.9 Score=44.47 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=63.7
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCC-CCCcc---eeEEEEECCEEEEEcCccCCCCCccccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS-PPPRS---AHQAVSWKNYLYIFGGEFTSPNQERFHH 154 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~-P~~R~---~ha~v~~~~~iyvfGG~~~s~~~~~~~~ 154 (685)
++.|||.+.. +.|+++|..+. .|+.-..... ..+.+ ..+.++.++.||+...
T Consensus 68 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------------ 125 (582)
T 1flg_A 68 DGVIYVTASY----------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------------ 125 (582)
T ss_dssp TTEEEEEETT----------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------------
T ss_pred CCEEEEEcCC----------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------------
Confidence 7888887651 24899999876 4886433211 00111 1234556888887532
Q ss_pred cCeEEEEECCCCc--EEEcccCCCCCCC--ccceEEEECC------EEEEEccccCCCCceeeeceEEEEEcCCCc--eE
Q 005655 155 YKDFWMLDLKTNQ--WEQLNLKGCPSPR--SGHRMVLYKH------KIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ 222 (685)
Q Consensus 155 ~~dv~~yD~~t~~--W~~~~~~g~P~~R--sgh~~v~~~~------~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~ 222 (685)
-..++.+|..|++ |+.-.. .+... ...+-++.++ .||+ |.... +..+...|+.||+.+.+ |+
T Consensus 126 dg~l~AlD~~TG~~~W~~~~~--~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~---e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 126 DASVVALNKNTGKVVWKKKFA--DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGD---EFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp TTEEEEEESSSCCEEEEEECS--CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCG---GGCCBCEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCCCCEEeeecCC--CCCcCcccccCCEEeCCCcCCcEEEEE-ecccc---ccCCCCEEEEEECCCCCEEee
Confidence 1468999998885 876432 11111 1112244555 5554 33211 01124579999998754 86
Q ss_pred E
Q 005655 223 E 223 (685)
Q Consensus 223 ~ 223 (685)
.
T Consensus 200 ~ 200 (582)
T 1flg_A 200 R 200 (582)
T ss_dssp E
T ss_pred c
Confidence 5
No 162
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=93.44 E-value=2 Score=45.10 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=61.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
+++..| ++.+++.|+. + ..+.+||+.+.+-...-... ...-.+++.. ++..++.|+..
T Consensus 128 ~v~~s~--dg~~l~s~~~--d-------~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~s~d------- 186 (393)
T 1erj_A 128 SVCFSP--DGKFLATGAE--D-------RLIRIWDIENRKIVMILQGH---EQDIYSLDYFPSGDKLVSGSGD------- 186 (393)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEcC--C-------CeEEEEECCCCcEEEEEccC---CCCEEEEEEcCCCCEEEEecCC-------
Confidence 455555 5677777773 2 36888999887655332221 1122233333 35555666642
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
..+.+||+.++.....-. .. .+...+.+ ++.+++.|+.+ ..|.+||+.+..-
T Consensus 187 ----~~v~iwd~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~s~d---------~~v~iwd~~~~~~ 241 (393)
T 1erj_A 187 ----RTVRIWDLRTGQCSLTLS--IE---DGVTTVAVSPGDGKYIAAGSLD---------RAVRVWDSETGFL 241 (393)
T ss_dssp ----SEEEEEETTTTEEEEEEE--CS---SCEEEEEECSTTCCEEEEEETT---------SCEEEEETTTCCE
T ss_pred ----CcEEEEECCCCeeEEEEE--cC---CCcEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcE
Confidence 457888998876543322 11 11222222 56777777753 3578888887654
No 163
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=93.42 E-value=2.6 Score=40.84 Aligned_cols=149 Identities=15% Similarity=0.310 Sum_probs=78.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEE--ecC--CCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~--l~s--~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~ 154 (685)
.+++|+|=|. .+|+++.....+.. +.. +.+| ..--|+... ++.||+|-|
T Consensus 33 ~g~~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~wp~Lp--~~iDAa~~~~~~~~iyfFkG------------ 87 (207)
T 1pex_A 33 RGETMIFKDR-----------FFWRLHPQQVDAELFLTKSFWPELP--NRIDAAYEHPSHDLIFIFRG------------ 87 (207)
T ss_dssp TTEEEEEETT-----------EEEEECSSSSCCEEEEHHHHCTTSC--SSCCEEEEETTTTEEEEEET------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCcCCCceehhHhccCCC--CCccEEEEeccCCcEEEEcc------------
Confidence 5888988873 46777665443321 211 2223 222333333 589999987
Q ss_pred cCeEEEEECCCCcE---EEcccCCCCCCCcc-ceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 155 YKDFWMLDLKTNQW---EQLNLKGCPSPRSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 155 ~~dv~~yD~~t~~W---~~~~~~g~P~~Rsg-h~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
+.+|+|+..+-.- ..|...|+|..-.+ -+++.+ ++++|+|-| +..|+||..+.+-..--+.+
T Consensus 88 -~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~~~~d~gyPr~ 155 (207)
T 1pex_A 88 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTNHIMDKDYPRL 155 (207)
T ss_dssp -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTTTEECSSCCCB
T ss_pred -CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-----------CEEEEEeCcCccccCCCCcc
Confidence 4678886432211 23433344532122 233334 479999987 46799998764311000000
Q ss_pred ----CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE
Q 005655 229 ----GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 229 ----~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (685)
-..+|. ... ++...++.+|+|-|. ..|+||..+.+-..
T Consensus 156 i~~~~~Gip~-~iD-aAf~~~g~~YfFkg~------------------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 156 IEEDFPGIGD-KVD-AVYEKNGYIYFFNGP------------------IQFEYSIWSNRIVR 197 (207)
T ss_dssp HHHHSTTSCS-CCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred HHHcCCCCCC-Ccc-EEEEcCCcEEEEECC------------------EEEEEeCCccEEec
Confidence 001121 222 333458999999764 27889887665443
No 164
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=93.41 E-value=0.7 Score=47.80 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=55.7
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~ 150 (685)
++...|. ++.+++.|+. + +.+.+||+.+......... +.+....+.... ++.+++.|+..
T Consensus 104 ~~~~~~~-~~~~l~s~~~--d-------~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------ 165 (408)
T 4a11_B 104 TVQWYPH-DTGMFTSSSF--D-------KTLKVWDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRG------ 165 (408)
T ss_dssp EEEECTT-CTTCEEEEET--T-------SEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCSSCCEEEEEESS------
T ss_pred EEEEccC-CCcEEEEEeC--C-------CeEEEeeCCCCccceeccC--CCceeeeEeecCCCCCcEEEEEcCC------
Confidence 3444442 2446666652 1 3688899988765544322 122111111111 23466676643
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
..+.+||+.+..-...- ........++.+ +.++++.|+.. ..+.+||+.+.
T Consensus 166 -----~~v~~~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~ll~~~~~d---------g~i~i~d~~~~ 219 (408)
T 4a11_B 166 -----PKVQLCDLKSGSCSHIL----QGHRQEILAVSWSPRYDYILATASAD---------SRVKLWDVRRA 219 (408)
T ss_dssp -----SSEEEEESSSSCCCEEE----CCCCSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTCS
T ss_pred -----CeEEEEeCCCcceeeee----cCCCCcEEEEEECCCCCcEEEEEcCC---------CcEEEEECCCC
Confidence 35888998766432211 111112222333 23477777753 35788888654
No 165
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.36 E-value=2.8 Score=41.31 Aligned_cols=186 Identities=8% Similarity=0.038 Sum_probs=87.7
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~ 159 (685)
++.+++.|+. + +.+.+||+.+.......... ...-.+++.. ++.+++.|+... .+.
T Consensus 28 ~~~~l~s~~~--d-------g~v~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg-----------~i~ 84 (313)
T 3odt_A 28 DDSKVASVSR--D-------GTVRLWSKDDQWLGTVVYTG---QGFLNSVCYDSEKELLLFGGKDT-----------MIN 84 (313)
T ss_dssp ETTEEEEEET--T-------SEEEEEEESSSEEEEEEEEC---SSCEEEEEEETTTTEEEEEETTS-----------CEE
T ss_pred CCCEEEEEEc--C-------CcEEEEECCCCEEEEEeecC---CccEEEEEECCCCCEEEEecCCC-----------eEE
Confidence 4556667762 2 36888998776544332211 1122233333 466777776533 356
Q ss_pred EEECCCCc-EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccc
Q 005655 160 MLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (685)
Q Consensus 160 ~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~ 238 (685)
+|++.... ...+.. ..........+.+++.+++.|+.. ..+.+||.....+.. ... ..+...
T Consensus 85 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~-~~~-----~~~v~~ 147 (313)
T 3odt_A 85 GVPLFATSGEDPLYT--LIGHQGNVCSLSFQDGVVISGSWD---------KTAKVWKEGSLVYNL-QAH-----NASVWD 147 (313)
T ss_dssp EEETTCCTTSCC-CE--ECCCSSCEEEEEEETTEEEEEETT---------SEEEEEETTEEEEEE-ECC-----SSCEEE
T ss_pred EEEeeecCCCCcccc--hhhcccCEEEEEecCCEEEEEeCC---------CCEEEEcCCcEEEec-ccC-----CCceeE
Confidence 66665431 111111 111222223344466666777653 357777732222211 111 122222
Q ss_pred eeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceec
Q 005655 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (685)
Q Consensus 239 ~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~ 317 (685)
..+...++.+++.|+..+. +.+||.....- .+.. +....-.++++. ++. ++.|+..
T Consensus 148 ~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~-~~~~----~~~~~i~~~~~~~~~~-~~~~~~d- 204 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKT----------------IKLWQNDKVIK-TFSG----IHNDVVRHLAVVDDGH-FISCSND- 204 (313)
T ss_dssp EEEEETTTTEEEEEETTSC----------------EEEEETTEEEE-EECS----SCSSCEEEEEEEETTE-EEEEETT-
T ss_pred EEEccCCCCEEEEEECCCC----------------EEEEecCceEE-EEec----cCcccEEEEEEcCCCe-EEEccCC-
Confidence 2333336667777777655 66777332221 1111 112222334443 566 6666543
Q ss_pred ccCCccccccccCCcEEEEECCCCc
Q 005655 318 MEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
..|.+||+.+..
T Consensus 205 -------------g~i~i~d~~~~~ 216 (313)
T 3odt_A 205 -------------GLIKLVDMHTGD 216 (313)
T ss_dssp -------------SEEEEEETTTCC
T ss_pred -------------CeEEEEECCchh
Confidence 358999987654
No 166
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=93.23 E-value=3.4 Score=41.18 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=30.4
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEE
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ 170 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~ 170 (685)
+.+++||+.+.+....... ....+.++.. + ..||+.+ +.+++||+.+..-..
T Consensus 115 ~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~--------------~~i~~~d~~~~~~~~ 168 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGLG--------------RDLHVMDPEAGTLVE 168 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEES--------------SSEEEEETTTTEEEE
T ss_pred ceEEEEECCCCcEEEEEeC----CCCcceeEECCCCCEEEEeC--------------CeEEEEECCCCcEee
Confidence 6799999988765532221 1112233333 3 4466662 358899998876543
No 167
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=93.22 E-value=6.8 Score=38.37 Aligned_cols=198 Identities=10% Similarity=-0.042 Sum_probs=108.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
+.+++.+. ++.||+.-.. .+.+++|++....-..+.... ...-+.+++. ++.||+.-..
T Consensus 39 ~gi~~d~~-~~~ly~~d~~---------~~~I~~~~~~g~~~~~~~~~~---~~~p~~ia~d~~~~~lyv~d~~------ 99 (267)
T 1npe_A 39 IGLAFDCV-DKVVYWTDIS---------EPSIGRASLHGGEPTTIIRQD---LGSPEGIALDHLGRTIFWTDSQ------ 99 (267)
T ss_dssp EEEEEETT-TTEEEEEETT---------TTEEEEEESSSCCCEEEECTT---CCCEEEEEEETTTTEEEEEETT------
T ss_pred EEEEEecC-CCEEEEEECC---------CCEEEEEecCCCCcEEEEECC---CCCccEEEEEecCCeEEEEECC------
Confidence 45666653 4678876541 246899999876544332211 1123455554 5789987542
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
.+.+++|++....-..+...++..| ..+++. +++||+..... ..+.|+++++....-..+...
T Consensus 100 -----~~~I~~~~~~g~~~~~~~~~~~~~P---~~i~vd~~~g~lyv~~~~~-------~~~~I~~~~~dg~~~~~~~~~ 164 (267)
T 1npe_A 100 -----LDRIEVAKMDGTQRRVLFDTGLVNP---RGIVTDPVRGNLYWTDWNR-------DNPKIETSHMDGTNRRILAQD 164 (267)
T ss_dssp -----TTEEEEEETTSCSCEEEECSSCSSE---EEEEEETTTTEEEEEECCS-------SSCEEEEEETTSCCCEEEECT
T ss_pred -----CCEEEEEEcCCCCEEEEEECCCCCc---cEEEEeeCCCEEEEEECCC-------CCcEEEEEecCCCCcEEEEEC
Confidence 2568899987654343332221111 233443 57899875321 125688888765433333221
Q ss_pred CCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
+. ..-.++++. ++.||+.-... +.+++|++....-..+..... . -+++++.
T Consensus 165 -----~~-~~P~gia~d~~~~~lyv~d~~~----------------~~I~~~~~~g~~~~~~~~~~~--~---P~gi~~d 217 (267)
T 1npe_A 165 -----NL-GLPNGLTFDAFSSQLCWVDAGT----------------HRAECLNPAQPGRRKVLEGLQ--Y---PFAVTSY 217 (267)
T ss_dssp -----TC-SCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTEEEEEEEEECCC--S---EEEEEEE
T ss_pred -----CC-CCCcEEEEcCCCCEEEEEECCC----------------CEEEEEecCCCceEEEecCCC--C---ceEEEEe
Confidence 11 122233443 57888875433 248888887543333322111 1 2456666
Q ss_pred CCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
++.+|+.... .+.|++||+.+.+-.
T Consensus 218 ~~~lyva~~~--------------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWK--------------TNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETT--------------TTEEEEEETTTTEEE
T ss_pred CCEEEEEECC--------------CCeEEEEeCCCCCce
Confidence 8889885432 356999999887654
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=93.20 E-value=5.6 Score=40.85 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=108.2
Q ss_pred EEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccc
Q 005655 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHH 154 (685)
Q Consensus 75 ~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~ 154 (685)
...| +++.++|+.. .++ ...+|++|+.+.+...++... .......+..-++..++|+..
T Consensus 42 ~~Sp--Dg~~l~~~~~-~~g-----~~~l~~~d~~~g~~~~lt~~~--~~~~~~~~~spdg~~l~~~~~----------- 100 (388)
T 3pe7_A 42 CFTR--DGSKLLFGGA-FDG-----PWNYYLLDLNTQVATQLTEGR--GDNTFGGFLSPDDDALFYVKD----------- 100 (388)
T ss_dssp CBCT--TSCEEEEEEC-TTS-----SCEEEEEETTTCEEEECCCSS--CBCSSSCEECTTSSEEEEEET-----------
T ss_pred cCCC--CCCEEEEEEc-CCC-----CceEEEEeCCCCceEEeeeCC--CCCccceEEcCCCCEEEEEeC-----------
Confidence 3455 5666666552 122 136999999999888876542 111111112224443333331
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCC-----C--------CceeeeceEEEEEcCCC
Q 005655 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDT-----L--------REVRYYNDLYVFDLDQF 219 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~-----~--------~~~~~~~dv~~yD~~t~ 219 (685)
-..++++|+.++.-..+.. .|..........+ ++.+++.--.... . ........|+++|+.+.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp TTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred CCeEEEEECCCCcceeeee--chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 1469999999988766554 3433322222222 3333331100000 0 00112368999999988
Q ss_pred ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcce
Q 005655 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (685)
Q Consensus 220 ~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g 299 (685)
+-..+... +.......+...++..+++...... ......+|.+|+.+.....+... +.....
T Consensus 179 ~~~~l~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~----------~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~ 240 (388)
T 3pe7_A 179 ESTVILQE-----NQWLGHPIYRPYDDSTVAFCHEGPH----------DLVDARMWLINEDGTNMRKVKTH---AEGESC 240 (388)
T ss_dssp CEEEEEEE-----SSCEEEEEEETTEEEEEEEEECSCT----------TTSSCSEEEEETTSCCCEESCCC---CTTEEE
T ss_pred ceEEeecC-----CccccccEECCCCCCEEEEEEecCC----------CCCcceEEEEeCCCCceEEeeeC---CCCccc
Confidence 76666543 2111222222213444444332211 01234699999887766655431 111111
Q ss_pred eEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 300 FSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 300 ~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
.+.+.. +++.++|...... .....|++||+.+..-..+..
T Consensus 241 ~~~~~spdg~~l~~~~~~~~---------~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKG---------SPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp EEEEECTTSSCEEEEEEETT---------CCCEEEEEECTTTCCEEEEEE
T ss_pred ccceECCCCCEEEEEecCCC---------CCcceEEEEecCCCceEEEEc
Confidence 122222 5554444333210 011249999999987766544
No 169
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=93.16 E-value=3.4 Score=47.03 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=55.4
Q ss_pred EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCc
Q 005655 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGI 269 (685)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (685)
.+++.|+.+ ..|.+||+.+..-...-.. . ...-.+++.. ++.+++.||.++.
T Consensus 532 ~~l~s~s~d---------~~v~vwd~~~~~~~~~~~~-----h-~~~v~~v~~spdg~~l~sg~~Dg~------------ 584 (694)
T 3dm0_A 532 PTIVSASWD---------KTVKVWNLSNCKLRSTLAG-----H-TGYVSTVAVSPDGSLCASGGKDGV------------ 584 (694)
T ss_dssp CEEEEEETT---------SCEEEEETTTCCEEEEECC-----C-SSCEEEEEECTTSSEEEEEETTSB------------
T ss_pred ceEEEEeCC---------CeEEEEECCCCcEEEEEcC-----C-CCCEEEEEEeCCCCEEEEEeCCCe------------
Confidence 355666643 4588889877654332111 1 1111222333 6778888887765
Q ss_pred eeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 270 ~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
+.++|+.+.+-.... .....-+++++..+..++++|.. +.|.+||+.+..-.
T Consensus 585 ----i~iwd~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~--------------~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 585 ----VLLWDLAEGKKLYSL-----EANSVIHALCFSPNRYWLCAATE--------------HGIKIWDLESKSIV 636 (694)
T ss_dssp ----CEEEETTTTEEEECC-----BCSSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTEEE
T ss_pred ----EEEEECCCCceEEEe-----cCCCcEEEEEEcCCCcEEEEEcC--------------CCEEEEECCCCCCh
Confidence 667887766432211 11222344555544445555432 34899999876543
No 170
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=93.15 E-value=3.6 Score=41.29 Aligned_cols=192 Identities=9% Similarity=-0.008 Sum_probs=91.4
Q ss_pred EEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 74 ~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
+.+.| ++.+++.|+. + ..+.+||+.+.+-. .+.. ....-.+++.. ++.+++.|+.+.
T Consensus 61 ~~~~~--~~~~l~s~s~--d-------~~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~sgs~D~------ 119 (304)
T 2ynn_A 61 GKFIA--RKNWIIVGSD--D-------FRIRVFNYNTGEKVVDFEA----HPDYIRSIAVHPTKPYVLSGSDDL------ 119 (304)
T ss_dssp EEEEG--GGTEEEEEET--T-------SEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSEEEEEETTS------
T ss_pred EEEeC--CCCEEEEECC--C-------CEEEEEECCCCcEEEEEeC----CCCcEEEEEEcCCCCEEEEECCCC------
Confidence 34444 4566666662 2 35788898877543 2221 11112233333 355667776533
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
.+.+||+.++. ..... +......-.++.+ ++.+++.|+.+ ..|.+||+.+..-...-..
T Consensus 120 -----~v~lWd~~~~~-~~~~~--~~~h~~~v~~v~~~p~~~~~l~sgs~D---------~~v~iwd~~~~~~~~~~~~- 181 (304)
T 2ynn_A 120 -----TVKLWNWENNW-ALEQT--FEGHEHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT- 181 (304)
T ss_dssp -----CEEEEEGGGTT-EEEEE--ECCCCSCEEEEEECTTCTTEEEEEETT---------SEEEEEETTCSSCSEEEEC-
T ss_pred -----eEEEEECCCCc-chhhh--hcccCCcEEEEEECCCCCCEEEEEeCC---------CeEEEEECCCCCccceecc-
Confidence 47778876542 11111 0001111122333 34677777753 3577888765431111111
Q ss_pred CCCCCCCccceeEEE--e-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE
Q 005655 229 GSMWPSPRSGFQFFV--Y-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~--~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~ 305 (685)
...+.-..+.. . ++.+++.|+..+. +.++|+.+..-...-. + ....-.++++.
T Consensus 182 ----~~~~~v~~~~~~~~~~~~~l~s~s~D~~----------------i~iWd~~~~~~~~~~~-~---h~~~v~~~~~~ 237 (304)
T 2ynn_A 182 ----GQERGVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLE-G---HMSNVSFAVFH 237 (304)
T ss_dssp ----CCTTCEEEEEECCSTTCCEEEEEETTSE----------------EEEEETTTTEEEEEEE-C---CSSCEEEEEEC
T ss_pred ----CCcCcEEEEEEEEcCCCCEEEEEcCCCe----------------EEEEeCCCCccceeeC-C---CCCCEEEEEEC
Confidence 11111111222 1 4556777776654 7778877654322211 1 11111223333
Q ss_pred -CCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
++.+++.|+.. ..|.+||+.+.+
T Consensus 238 p~~~~l~s~s~D--------------g~i~iWd~~~~~ 261 (304)
T 2ynn_A 238 PTLPIIISGSED--------------GTLKIWNSSTYK 261 (304)
T ss_dssp SSSSEEEEEETT--------------SCEEEEETTTCC
T ss_pred CCCCEEEEEcCC--------------CeEEEEECCCCc
Confidence 45667777653 348899987754
No 171
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.14 E-value=7.2 Score=40.93 Aligned_cols=196 Identities=13% Similarity=0.242 Sum_probs=103.0
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC-CCC-C-c-------ceeEEEEE----CC
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPP-P-R-------SAHQAVSW----KN 135 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~-~-R-------~~ha~v~~----~~ 135 (685)
.-+++++.|.+.+.||+.+.. +. +-.-|++++-...+|+.+..+. .|. + + .-+++++. ++
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~---g~---~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 129 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAART---GH---LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG 129 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--------CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT
T ss_pred ceEEEEECCCCCCeEEEEecC---CC---CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC
Confidence 346677776545778876532 10 1114777766678999886431 111 1 1 11223332 46
Q ss_pred EEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCC--------------CCccceEEEE---CCEEEEEcc
Q 005655 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS--------------PRSGHRMVLY---KHKIIVFGG 197 (685)
Q Consensus 136 ~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~--------------~Rsgh~~v~~---~~~lyv~GG 197 (685)
.||+.+. ...+++.+-...+|+.+.... .|. ...-|++++. .+.||+.++
T Consensus 130 ~l~~g~~------------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~ 197 (394)
T 3b7f_A 130 TWYAGTS------------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS 197 (394)
T ss_dssp CEEEEEE------------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEec------------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC
Confidence 6776542 135778877778999885310 121 1122344433 256777533
Q ss_pred ccCCCCceeeeceEEEEEcCCCceEEeccCCC-CCCCCC-----ccceeEEEe-C--CEEEEEecccCCCCcccCCCCCC
Q 005655 198 FYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG-SMWPSP-----RSGFQFFVY-Q--DEVFLYGGYSKEVSTDKNQSEKG 268 (685)
Q Consensus 198 ~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~-~~~P~~-----Rs~~s~~~~-~--~~Iyv~GG~~~~~~~~~~~~~~~ 268 (685)
. ..|++.+-...+|+.+..... ..+|.+ ...++++.. . +.||+.. .
T Consensus 198 ~----------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-~-------------- 252 (394)
T 3b7f_A 198 S----------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-H-------------- 252 (394)
T ss_dssp T----------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-T--------------
T ss_pred C----------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-C--------------
Confidence 1 236777667789998864211 111221 223444444 2 5666632 1
Q ss_pred ceeeeEEEEeCCCceeEEeecCCCCCCC--cceeEEEEE---CCeEEEec
Q 005655 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGP--RAGFSMCVH---KKRALLFG 313 (685)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~~~~~g~~P~~--R~g~s~~~~---~~~iyvfG 313 (685)
..+++++-...+|+.+... .|.. ..++++++. .+.||+..
T Consensus 253 ---~gl~~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 253 ---CGIYRMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp ---TEEEEEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred ---CeEEEeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEEe
Confidence 1277888888999988641 2321 344555553 46677753
No 172
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=93.14 E-value=0.31 Score=50.43 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=49.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc-EEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~-W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~ 149 (685)
.++...| ++.+++.|+. + +.+.+||+.+.. |..+.... .....-.+++.. ++.+++.|+..
T Consensus 59 ~~~~~s~--~~~~l~s~s~--d-------~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d----- 121 (377)
T 3dwl_C 59 TCVDWAP--KSNRIVTCSQ--D-------RNAYVYEKRPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGA----- 121 (377)
T ss_dssp EEEEECT--TTCCEEEEET--T-------SSEEEC------CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESS-----
T ss_pred EEEEEeC--CCCEEEEEeC--C-------CeEEEEEcCCCCceeeeeEec-ccCCceEEEEECCCCCEEEEEecC-----
Confidence 3445555 4667777762 2 357888888776 44322211 111112222222 45666677643
Q ss_pred ccccccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 150 ERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
..+.+||+.+.. |..+.....+.. .....+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 122 ------~~i~iwd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~ 178 (377)
T 3dwl_C 122 ------RVISVCYFEQENDWWVSKHLKRPLR-STILSLDWHPNNVLLAAGCAD---------RKAYVLSAYVR 178 (377)
T ss_dssp ------SCEEECCC-----CCCCEEECSSCC-SCEEEEEECTTSSEEEEEESS---------SCEEEEEECCS
T ss_pred ------CeEEEEEECCcccceeeeEeecccC-CCeEEEEEcCCCCEEEEEeCC---------CEEEEEEEEec
Confidence 246677776654 322222111111 12222333 55677777753 35777887543
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=93.12 E-value=4 Score=45.77 Aligned_cols=106 Identities=12% Similarity=0.100 Sum_probs=61.6
Q ss_pred eceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeE
Q 005655 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (685)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (685)
...|+++|..+.....+... +..+.-|.+... +..+|+.... .+.+.++|+.+.+-.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i-----~~~~~~~d~~~~pdgr~~~va~~~----------------sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI-----SAERFLHDGGLDGSHRYFITAANA----------------RNKLVVIDTKEGKLV 377 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE-----ECCSSEEEEEECTTSCEEEEEEGG----------------GTEEEEEETTTTEEE
T ss_pred CCeEEEEecCCCccceeeee-----eccccccCceECCCCCEEEEEeCC----------------CCeEEEEECCCCcEE
Confidence 36788999887766555544 445555555544 3334443322 234888999988765
Q ss_pred EeecC-CCCCCCcceeEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCC-----cEEEEEe
Q 005655 286 KVKKI-GMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-----RWYPLEL 348 (685)
Q Consensus 286 ~~~~~-g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-----~W~~l~~ 348 (685)
..... +..|.+..|... ++ .+.+|+.+-.. -+.|.++|..+. .|..+..
T Consensus 378 ~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g-------------~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG-------------DDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS-------------SSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEeccCcCCCCccceee-ECCCCCcEEEeCCCC-------------CCeEEEecCCCCCCccccCEEEEE
Confidence 55555 555666545543 34 35676654221 145888887763 2766554
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=93.10 E-value=2 Score=43.47 Aligned_cols=121 Identities=11% Similarity=0.039 Sum_probs=60.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
++++..| ++.||+.+.. ++. ..+.|++||+.+.....+.... +....-..+++. ++.+|+........
T Consensus 90 ~~i~~~~--dg~l~v~~~~--~~~---~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~--- 158 (333)
T 2dg1_A 90 AAIKIHK--DGRLFVCYLG--DFK---STGGIFAATENGDNLQDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYST--- 158 (333)
T ss_dssp EEEEECT--TSCEEEEECT--TSS---SCCEEEEECTTSCSCEEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTT---
T ss_pred ceEEECC--CCcEEEEeCC--CCC---CCceEEEEeCCCCEEEEEEccC-ccCCcccceEECCCCCEEEEecccccc---
Confidence 3444444 4566665431 100 1136899999888765332211 111222233333 57788764321110
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CC-EEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
.....+|+||+.+.....+... .. .-++++.. ++ .||+.... .+.|++||+.+
T Consensus 159 --~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~i~~~~dg~~l~v~~~~---------~~~i~~~d~~~ 213 (333)
T 2dg1_A 159 --NPLGGVYYVSPDFRTVTPIIQN-IS---VANGIALSTDEKVLWVTETT---------ANRLHRIALED 213 (333)
T ss_dssp --BCCEEEEEECTTSCCEEEEEEE-ES---SEEEEEECTTSSEEEEEEGG---------GTEEEEEEECT
T ss_pred --CCCceEEEEeCCCCEEEEeecC-CC---cccceEECCCCCEEEEEeCC---------CCeEEEEEecC
Confidence 1135799999988777665321 11 11223332 33 57776432 35688999854
No 175
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=93.06 E-value=8.9 Score=39.69 Aligned_cols=201 Identities=7% Similarity=-0.063 Sum_probs=99.8
Q ss_pred EEEEeccCCCEEEEE-cCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILY-GGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vf-GG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
++++.| +++++++ +|. .+ +.+.++|+.+.+........ .. -.+++.. ++.+++.|+.
T Consensus 138 ~v~fSp--Dg~~la~as~~-~d-------~~i~iwd~~~~~~~~~~~~~--~~--V~~v~fspdg~~l~s~s~------- 196 (365)
T 4h5i_A 138 LVYISR--EGTVAAIASSK-VP-------AIMRIIDPSDLTEKFEIETR--GE--VKDLHFSTDGKVVAYITG------- 196 (365)
T ss_dssp EEEECT--TSSCEEEEESC-SS-------CEEEEEETTTTEEEEEEECS--SC--CCEEEECTTSSEEEEECS-------
T ss_pred EEEEcC--CCCEEEEEECC-CC-------CEEEEeECCCCcEEEEeCCC--Cc--eEEEEEccCCceEEeccc-------
Confidence 345556 5555544 442 11 35788999888765332211 11 1223333 4566666542
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCC
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (685)
+.+.+++..++.....................-++.+++.++..... ...++.+++....+..+.....
T Consensus 197 -----~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~-----~~~i~~~~~~~~~~~~~~~~~~- 265 (365)
T 4h5i_A 197 -----SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK-----GIVLTKISIKSGNTSVLRSKQV- 265 (365)
T ss_dssp -----SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC-----CEEEEEEEEETTEEEEEEEEEE-
T ss_pred -----eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc-----eeEEeecccccceecceeeeee-
Confidence 34667887777654433211111111112222377777777764322 2346677776665543322100
Q ss_pred CCCCCccc-eeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CC
Q 005655 231 MWPSPRSG-FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (685)
Q Consensus 231 ~~P~~Rs~-~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~ 307 (685)
...... .+++.. ++.+++.|+.++. +.+||..+.+-......+ ....-.++++. ++
T Consensus 266 --~~~~~~V~~~~~Spdg~~lasgs~D~~----------------V~iwd~~~~~~~~~~~~g---H~~~V~~v~fSpdg 324 (365)
T 4h5i_A 266 --TNRFKGITSMDVDMKGELAVLASNDNS----------------IALVKLKDLSMSKIFKQA---HSFAITEVTISPDS 324 (365)
T ss_dssp --ESSCSCEEEEEECTTSCEEEEEETTSC----------------EEEEETTTTEEEEEETTS---SSSCEEEEEECTTS
T ss_pred --cCCCCCeEeEEECCCCCceEEEcCCCE----------------EEEEECCCCcEEEEecCc---ccCCEEEEEECCCC
Confidence 001111 122233 7788888888765 778898876533221111 01111223333 67
Q ss_pred eEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
++++-|+.. +.|-+|++..
T Consensus 325 ~~laS~S~D--------------~tvrvw~ip~ 343 (365)
T 4h5i_A 325 TYVASVSAA--------------NTIHIIKLPL 343 (365)
T ss_dssp CEEEEEETT--------------SEEEEEECCT
T ss_pred CEEEEEeCC--------------CeEEEEEcCC
Confidence 777777653 3488888754
No 176
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.98 Score=47.07 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=75.5
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC----CccceEEEE--C-CEEEEEccccCCCCceee
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP----RSGHRMVLY--K-HKIIVFGGFYDTLREVRY 207 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~----Rsgh~~v~~--~-~~lyv~GG~~~~~~~~~~ 207 (685)
+.+++.|+.. ..+.+||+.+......-. .+.. ......+.+ + ..+++.|+..+.
T Consensus 178 ~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~------ 238 (416)
T 2pm9_A 178 AHVFASAGSS-----------NFASIWDLKAKKEVIHLS--YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN------ 238 (416)
T ss_dssp TTEEEEESSS-----------SCEEEEETTTTEEEEEEC--CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS------
T ss_pred CcEEEEEcCC-----------CCEEEEECCCCCcceEEe--ccccccccCCceEEEEECCCCCCEEEEEECCCC------
Confidence 5677777753 358899998876543322 1211 222223333 2 357777764321
Q ss_pred eceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeE
Q 005655 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (685)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (685)
...|.+||+.+..-. +..... .....-.+++.. ++.+++.|+.++. +.+||+.+.+-.
T Consensus 239 ~~~i~~~d~~~~~~~-~~~~~~---~~~~~v~~~~~s~~~~~~l~s~~~dg~----------------v~~wd~~~~~~~ 298 (416)
T 2pm9_A 239 DPSILIWDLRNANTP-LQTLNQ---GHQKGILSLDWCHQDEHLLLSSGRDNT----------------VLLWNPESAEQL 298 (416)
T ss_dssp SCCCCEEETTSTTSC-SBCCCS---CCSSCEEEEEECSSCSSCEEEEESSSE----------------EEEECSSSCCEE
T ss_pred CceEEEEeCCCCCCC-cEEeec---CccCceeEEEeCCCCCCeEEEEeCCCC----------------EEEeeCCCCccc
Confidence 126788888764311 111100 011111222222 5677888877654 778887765433
Q ss_pred EeecCCCCCCCcceeEEEEE-CC-eEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 286 KVKKIGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 286 ~~~~~g~~P~~R~g~s~~~~-~~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
..-.. ....-.++++. ++ .+++.|+.. +.|.+||+.+.
T Consensus 299 ~~~~~----~~~~v~~~~~s~~~~~~l~s~~~d--------------~~i~iw~~~~~ 338 (416)
T 2pm9_A 299 SQFPA----RGNWCFKTKFAPEAPDLFACASFD--------------NKIEVQTLQNL 338 (416)
T ss_dssp EEEEC----SSSCCCCEEECTTCTTEEEECCSS--------------SEEEEEESCCC
T ss_pred eeecC----CCCceEEEEECCCCCCEEEEEecC--------------CcEEEEEccCC
Confidence 22111 01111233343 34 677777753 34888888654
No 177
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.05 E-value=3.6 Score=43.31 Aligned_cols=193 Identities=8% Similarity=0.086 Sum_probs=101.2
Q ss_pred cEEEEEcCC--CcEEEecCCCCCCCcceeEEEEE---CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-
Q 005655 102 DLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG- 175 (685)
Q Consensus 102 dv~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~---~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g- 175 (685)
-+++|+... .+|..+... +....-+++++. ++.||+.+.... .-.-|++.+-...+|+.+....
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~--~~~~~v~~i~~dp~~~~~l~~g~~~g~--------~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV--FLGHTIHHIVQDPREPERMLMAARTGH--------LGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE--STTSEEEEEEECSSSTTCEEEEEEC----------CCEEEEEESSTTSCCEECSBCCC
T ss_pred ceEEEECCCCCCCceECCcc--CCCCceEEEEECCCCCCeEEEEecCCC--------CCccEEEeCCCCCCceECCcccc
Confidence 367787765 689976421 122334555554 467887653210 0024777766678999986421
Q ss_pred CCCC--C----c-cc--eEEEE----CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC-----------
Q 005655 176 CPSP--R----S-GH--RMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM----------- 231 (685)
Q Consensus 176 ~P~~--R----s-gh--~~v~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~----------- 231 (685)
.+.. + . .+ ++++. .+.||+.+. ..-|++.+-...+|+.+.......
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~----------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~ 171 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS----------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQD 171 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE----------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC--
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEec----------CCcEEEEcCCCCCeEECcCccCCcccccccccccc
Confidence 1211 1 1 11 23332 466776532 135777777778899886421000
Q ss_pred -CCCCccceeEEEe---CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC---CCCCC-----cce
Q 005655 232 -WPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---MPPGP-----RAG 299 (685)
Q Consensus 232 -~P~~Rs~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g---~~P~~-----R~g 299 (685)
.+....-+++++. .+.|||..+. . -+++.+-...+|+.+.... ..|.+ ...
T Consensus 172 g~~~~~~i~~i~~d~~~~~~l~vg~~~-g----------------gl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~ 234 (394)
T 3b7f_A 172 GTPDGPKMHSILVDPRDPKHLYIGMSS-G----------------GVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDP 234 (394)
T ss_dssp --CCCCEEEEEEECTTCTTCEEEEEET-B----------------EEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCE
T ss_pred CCCCCCceeEEEECCCCCCEEEEEECC-C----------------CEEEECCCCCCceECCCCccccccCCCccccCcce
Confidence 0111222344443 3566665322 1 2677777788999885311 11221 223
Q ss_pred eEEEEEC---CeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 300 FSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 300 ~s~~~~~---~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
+++++.. +.||+ |.. ..||+++-...+|..+.
T Consensus 235 ~~i~~~~~~~~~l~v-g~~---------------~gl~~s~D~G~tW~~~~ 269 (394)
T 3b7f_A 235 HCVVQHPAAPDILYQ-QNH---------------CGIYRMDRREGVWKRIG 269 (394)
T ss_dssp EEEEECSSSTTEEEE-EET---------------TEEEEEETTTTEEECGG
T ss_pred eEEEECCCCCCEEEE-EcC---------------CeEEEeCCCCCcceECC
Confidence 4555542 55665 321 23788887788898775
No 178
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=93.01 E-value=3.2 Score=39.71 Aligned_cols=149 Identities=13% Similarity=0.228 Sum_probs=81.5
Q ss_pred eEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCC--CcEEE--ccc--CCCCCCCccceEEEE--CCEEEEEcccc
Q 005655 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQ--LNL--KGCPSPRSGHRMVLY--KHKIIVFGGFY 199 (685)
Q Consensus 128 ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t--~~W~~--~~~--~g~P~~Rsgh~~v~~--~~~lyv~GG~~ 199 (685)
-+++.+++.+|+|=| +.+|+|+... ..... +.. .++|.. --++..+ ++++|+|-|
T Consensus 10 DAi~~~~g~~yfFkg-------------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG-- 72 (195)
T 1itv_A 10 DAIAEIGNQLYLFKD-------------GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG-- 72 (195)
T ss_dssp SEEEEETTEEEEEET-------------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET--
T ss_pred CEEEEeCCEEEEEEC-------------CEEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC--
Confidence 345567899999987 4689998765 22322 211 234431 2233333 678999988
Q ss_pred CCCCceeeeceEEEEEcCCCce-EEeccCCCCCCCCC--ccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEE
Q 005655 200 DTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSP--RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 200 ~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~--Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
+.+|+|+..+..- ..|... .+|.. ....++...++++|+|-|. ..|+
T Consensus 73 ---------~~yw~~~~~~~~~Pk~i~~~---G~p~~~~~iDAA~~~~~g~~yfFkg~------------------~ywr 122 (195)
T 1itv_A 73 ---------RQVWVYTGASVLGPRRLDKL---GLGADVAQVTGALRSGRGKMLLFSGR------------------RLWR 122 (195)
T ss_dssp ---------TEEEEEETTEEEEEEEGGGG---TCCTTCCCCCEEEECSTTEEEEEETT------------------EEEE
T ss_pred ---------CEEEEEcCCccCCCEEeeec---ccCCCccceeEEEEcCCCeEEEEeCC------------------EEEE
Confidence 4568887542111 011111 12321 2333333337899999663 2789
Q ss_pred EeCCCceeEE-----eec--CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 277 LDPRTWEWSK-----VKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 277 yd~~t~~W~~-----~~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
||..+.+=.. +.. .|. | ..-.++...++.+|+|-|.. .|.||..+.+
T Consensus 123 ~d~~~~~~~~gyPr~i~~~w~Gv-p--~~idaa~~~~g~~Yffkg~~----------------y~~~~~~~~~ 176 (195)
T 1itv_A 123 FDVKAQMVDPRSASEVDRMFPGV-P--LDTHDVFQFREKAYFCQDRF----------------YWRVSSRSEL 176 (195)
T ss_dssp EETTTTEECGGGCEEHHHHSTTS-C--SSCSEEEEETTEEEEEETTE----------------EEEEECCTTC
T ss_pred EeCCcccccCCCccChhhcCCCC-C--CCCCEEEEeCCeEEEEeCCE----------------EEEEECCccE
Confidence 9976643110 100 121 2 12234445579999998753 7888887664
No 179
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=92.97 E-value=0.36 Score=51.64 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=15.3
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
++.+++.|+.. ..|.+||+.+.
T Consensus 243 ~~~~l~s~~~d---------g~i~i~d~~~~ 264 (430)
T 2xyi_A 243 HESLFGSVADD---------QKLMIWDTRNN 264 (430)
T ss_dssp CTTEEEEEETT---------SEEEEEETTCS
T ss_pred CCCEEEEEeCC---------CeEEEEECCCC
Confidence 45677777642 46889998865
No 180
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=92.95 E-value=1.5 Score=45.37 Aligned_cols=91 Identities=10% Similarity=0.048 Sum_probs=48.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.+.+||+.+.....+..... ....-.+++.. ++.+++.|+.. ..+.+||+....-..+.. ..
T Consensus 142 ~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~-----h~ 204 (383)
T 3ei3_B 142 ATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST-----------GRLLLLGLDGHEIFKEKL-----HK 204 (383)
T ss_dssp EEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT-----------SEEEEEETTSCEEEEEEC-----SS
T ss_pred EEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC-----------CCEEEEECCCCEEEEecc-----CC
Confidence 57788888776666544321 11112233333 45666676642 468889985444333322 11
Q ss_pred ccceEEEE--CCE-EEEEccccCCCCceeeeceEEEEEcCC
Q 005655 181 SGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 181 sgh~~v~~--~~~-lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
..-..+.+ ++. +++.|+.+ ..|.+||+.+
T Consensus 205 ~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~ 236 (383)
T 3ei3_B 205 AKVTHAEFNPRCDWLMATSSVD---------ATVKLWDLRN 236 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEETT---------SEEEEEEGGG
T ss_pred CcEEEEEECCCCCCEEEEEeCC---------CEEEEEeCCC
Confidence 12223333 333 77777753 4688888876
No 181
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=92.91 E-value=4.2 Score=40.80 Aligned_cols=144 Identities=10% Similarity=0.029 Sum_probs=70.0
Q ss_pred eEEEEeccCCCE-EEEEcCeecCCCceeeeccEEEEEc-CCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETE-LILYGGEFYNGNKTYVYGDLYRYDV-EKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~-L~vfGG~~~~g~~~~~~ndv~~yd~-~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~ 149 (685)
.+++..| ++. +++.|+. + +.+++||+ .+.....+.... ....-.+++...+.+++.|+..
T Consensus 60 ~~~~~~~--~~~~~l~~~~~--d-------g~i~~wd~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~l~s~~~d----- 121 (342)
T 1yfq_A 60 LCCNFID--NTDLQIYVGTV--Q-------GEILKVDLIGSPSFQALTNNE--ANLGICRICKYGDDKLIAASWD----- 121 (342)
T ss_dssp EEEEEEE--SSSEEEEEEET--T-------SCEEEECSSSSSSEEECBSCC--CCSCEEEEEEETTTEEEEEETT-----
T ss_pred EEEEECC--CCCcEEEEEcC--C-------CeEEEEEeccCCceEeccccC--CCCceEEEEeCCCCEEEEEcCC-----
Confidence 3455555 466 6777762 2 36889999 888776654310 1112223333335556666642
Q ss_pred ccccccCeEEEEECCCCc-------EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC-Cc-
Q 005655 150 ERFHHYKDFWMLDLKTNQ-------WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FK- 220 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-------W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~- 220 (685)
..+.+||+.+.. ...+.. ......-.++....+. ++.|+. -..|.+||+.+ ..
T Consensus 122 ------~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-l~~~~~---------d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 122 ------GLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR-LIVGMN---------NSQVQWFRLPLCEDD 183 (342)
T ss_dssp ------SEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE-EEEEES---------TTEEEEEESSCCTTC
T ss_pred ------CeEEEEcccccccccccccCCeeeE--EeeCCceEEEEecCCc-EEEEeC---------CCeEEEEECCccccc
Confidence 346777765300 111221 1212222233333445 555553 24688999887 33
Q ss_pred -eEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCC
Q 005655 221 -WQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (685)
Q Consensus 221 -W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~ 257 (685)
....... ....-.+++.. ++.+++.|+..+.
T Consensus 184 ~~~~~~~~------~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 184 NGTIEESG------LKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp CCEEEECS------CSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred cceeeecC------CCCceeEEEECCCCCCEEEEEecCCc
Confidence 3323221 11112223333 4567777776543
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.89 E-value=2.1 Score=44.06 Aligned_cols=211 Identities=9% Similarity=0.071 Sum_probs=99.1
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC--CE-EEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NY-LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~-iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (685)
..+|++|+.+.+...+... .......+... +. |++... ... . .....+|++|+.+..+..+.. .
T Consensus 168 ~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~~-~~~--~---~~~~~l~~~d~~~~~~~~l~~---~ 234 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCHE-GPH--D---LVDARMWLVNEDGSNVRKIKE---H 234 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEEC-SCS--S---SCSCCCEEEETTSCCCEESSC---C
T ss_pred ceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEec-CCC--C---CCCceEEEEECCCCceeEeec---c
Confidence 4689999999888776532 12222223333 44 433321 111 0 112579999998888777654 1
Q ss_pred CCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEeccc
Q 005655 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYS 255 (685)
Q Consensus 178 ~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~ 255 (685)
.+......+.+ ++..+++.+..... ....|++||+.+.....+... +. ........++.++++++..
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~~g~~~~l~~~-----~~--~~~~~s~~dg~~l~~~~~~ 303 (396)
T 3c5m_A 235 AEGESCTHEFWIPDGSAMAYVSYFKGQ----TDRVIYKANPETLENEEVMVM-----PP--CSHLMSNFDGSLMVGDGCD 303 (396)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTT----CCEEEEEECTTTCCEEEEEEC-----CS--EEEEEECSSSSEEEEEECC
T ss_pred CCCccccceEECCCCCEEEEEecCCCC----ccceEEEEECCCCCeEEeeeC-----CC--CCCCccCCCCceEEEecCC
Confidence 11222222333 45444444332211 123499999998887776644 21 1122222155666665432
Q ss_pred CCCCcccC-CCCCCceeeeEEEEeCCCceeEEeecCCCCC-----C-CcceeEEEEE-CCeEEEecceecccCCcccccc
Q 005655 256 KEVSTDKN-QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP-----G-PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMS 327 (685)
Q Consensus 256 ~~~~~~~~-~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P-----~-~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~ 327 (685)
.+..... ......-...++++|+.+.....+....... . .......++. +++.++|.....
T Consensus 304 -~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~---------- 372 (396)
T 3c5m_A 304 -APVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE---------- 372 (396)
T ss_dssp -C----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT----------
T ss_pred -cceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC----------
Confidence 1000000 0000011246899999887776665421100 0 0001112222 454444543321
Q ss_pred ccCCcEEEEECCCCcEEEEE
Q 005655 328 LFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 328 ~~~ndl~~yd~~t~~W~~l~ 347 (685)
-...||.+++.+..+..+.
T Consensus 373 -~~~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 373 -GVPAIYIADVPESYKHLEH 391 (396)
T ss_dssp -SSCEEEEEECCTTCC----
T ss_pred -CCceEEEEEEccccccccc
Confidence 1346999998887776544
No 183
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=92.85 E-value=2.2 Score=46.92 Aligned_cols=150 Identities=9% Similarity=-0.031 Sum_probs=75.1
Q ss_pred EEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC-CccceEEEE--C-CEEEEEccccCCCCceeeeceEE
Q 005655 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 137 iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~-Rsgh~~v~~--~-~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
+++.|+.. ..+.+||+.+..-...-. .... .....++.+ + +.+++.|+.. ..+.
T Consensus 175 ~l~~~~~d-----------~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~ 232 (615)
T 1pgu_A 175 RSMTVGDD-----------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD---------RKIS 232 (615)
T ss_dssp EEEEEETT-----------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT---------CCEE
T ss_pred EEEEEeCC-----------CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCC---------CeEE
Confidence 67777642 457888887655433211 1111 002223333 4 6677777753 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCC
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~ 292 (685)
+||+.+.+....-..+......+... +...++.+++.|+..+. +.+||+.+......-....
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFA--LSWLDSQKFATVGADAT----------------IRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEE--EEESSSSEEEEEETTSE----------------EEEEETTTTEEEEEEECCT
T ss_pred EEECCCCCEeEEecccccccCCceEE--EEEcCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcCCC
Confidence 99988776544321100000112222 22226777777776554 7788887765544332211
Q ss_pred CCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 293 PPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 293 ~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
.+......+++..++..++.|+.. +.|.+||+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~--------------g~i~~~d~~~ 328 (615)
T 1pgu_A 295 QQLGNQQVGVVATGNGRIISLSLD--------------GTLNFYELGH 328 (615)
T ss_dssp TCGGGCEEEEEEEETTEEEEEETT--------------SCEEEEETTE
T ss_pred CcccCceeEEEeCCCCeEEEEECC--------------CCEEEEECCC
Confidence 111122223333366666666643 3477888765
No 184
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.77 E-value=0.99 Score=55.16 Aligned_cols=191 Identities=9% Similarity=0.030 Sum_probs=96.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++++.| ++.++++|+. + +.+++|+..+.......... ... -.+++.. ++..++.||..
T Consensus 966 ~~~~sp--~g~~l~~g~~--~-------g~i~i~d~~~~~~~~~~~~h--~~~-v~~l~~s~dg~~l~s~~~d------- 1024 (1249)
T 3sfz_A 966 CCCLSP--HLEYVAFGDE--D-------GAIKIIELPNNRVFSSGVGH--KKA-VRHIQFTADGKTLISSSED------- 1024 (1249)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCCEEEETTTTSCEEECCCC--SSC-CCCEEECSSSSCEEEECSS-------
T ss_pred EEEEcC--CCCEEEEEcC--C-------CCEEEEEcCCCceeeecccC--CCc-eEEEEECCCCCEEEEEcCC-------
Confidence 344444 5667777762 2 35788898877544332211 111 1122222 46666777643
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (685)
..+.+||+.++....+.. . ...-.+++...+..++.|+.. ..+.+||+.+.+-...-..
T Consensus 1025 ----g~i~vwd~~~~~~~~~~~--~--~~~v~~~~~~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~---- 1083 (1249)
T 3sfz_A 1025 ----SVIQVWNWQTGDYVFLQA--H--QETVKDFRLLQDSRLLSWSFD---------GTVKVWNVITGRIERDFTC---- 1083 (1249)
T ss_dssp ----SBEEEEETTTTEEECCBC--C--SSCEEEEEECSSSEEEEEESS---------SEEEEEETTTTCCCEEEEC----
T ss_pred ----CEEEEEECCCCceEEEec--C--CCcEEEEEEcCCCcEEEEECC---------CcEEEEECCCCceeEEEcc----
Confidence 358889998887664332 1 112223333344445555542 4688899877653322211
Q ss_pred CCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcce-eEEEEE-CCe
Q 005655 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG-FSMCVH-KKR 308 (685)
Q Consensus 232 ~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g-~s~~~~-~~~ 308 (685)
..... .+++.. ++.+++.|+..+. +.+||..+..- +.. ....... .++++. +++
T Consensus 1084 -~~~~v-~~~~~s~d~~~l~s~s~d~~----------------v~iwd~~~~~~--~~~---l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1084 -HQGTV-LSCAISSDATKFSSTSADKT----------------AKIWSFDLLSP--LHE---LKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp -CSSCC-CCEEECSSSSSCEEECCSSC----------------CCEECSSSSSC--SBC---CCCCSSCEEEEEECSSSS
T ss_pred -cCCcE-EEEEECCCCCEEEEEcCCCc----------------EEEEECCCcce--eee---eccCCCcEEEEEECCCCC
Confidence 11111 122222 6667777776654 45666554321 111 1111111 222332 677
Q ss_pred EEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+++.|+.. ..|.+||+.+..
T Consensus 1141 ~lat~~~d--------------g~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1141 LLATGDDN--------------GEIRIWNVSDGQ 1160 (1249)
T ss_dssp EEEEEETT--------------SCCCEEESSSSC
T ss_pred EEEEEeCC--------------CEEEEEECCCCc
Confidence 78887753 237888887654
No 185
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=92.71 E-value=5.4 Score=41.90 Aligned_cols=68 Identities=9% Similarity=0.096 Sum_probs=39.1
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++.+++.|+.. ..+.+||+.+..-...-. .+.....-.++.+ ++.+++.|+.+ ..|
T Consensus 181 ~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d---------g~i 238 (437)
T 3gre_A 181 EKSLLVALTNL-----------SRVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTR---------GII 238 (437)
T ss_dssp SCEEEEEEETT-----------SEEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCC---------CeE
Confidence 36777777653 468899998876433222 1111112223333 56777777753 358
Q ss_pred EEEEcCCCceEE
Q 005655 212 YVFDLDQFKWQE 223 (685)
Q Consensus 212 ~~yD~~t~~W~~ 223 (685)
.+||+.+.....
T Consensus 239 ~iwd~~~~~~~~ 250 (437)
T 3gre_A 239 DIWDIRFNVLIR 250 (437)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEEcCCccEEE
Confidence 899998765433
No 186
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.69 E-value=10 Score=38.87 Aligned_cols=180 Identities=9% Similarity=0.066 Sum_probs=91.1
Q ss_pred EEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC-
Q 005655 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR- 180 (685)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R- 180 (685)
+|+=.-...+|+.+..+ ......+++.. ++.+|++|-. ..+++-.-.-.+|+.+.... +.+.
T Consensus 17 ~~~s~d~g~~W~~~~~~---~~~~~~~v~~~~~~~~~~~G~~------------g~i~~s~DgG~tW~~~~~~~-~~~~~ 80 (327)
T 2xbg_A 17 SAIPALDYNPWEAIQLP---TTATILDMSFIDRHHGWLVGVN------------ATLMETRDGGQTWEPRTLVL-DHSDY 80 (327)
T ss_dssp -CCCBCSSCCEEEEECS---CSSCEEEEEESSSSCEEEEETT------------TEEEEESSTTSSCEECCCCC-SCCCC
T ss_pred eeecCCCCCCceEeecC---CCCcEEEEEECCCCcEEEEcCC------------CeEEEeCCCCCCCeECCCCC-CCCCc
Confidence 33333345689988643 22333333333 4678886531 22444322345899986521 1222
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCC
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVS 259 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~ 259 (685)
.-.++....+.+|+.|.. ..|++-.=.-.+|+.+.... +.+-..+.++.. ++.+|+.|... .
T Consensus 81 ~~~~i~~~~~~~~~~g~~----------g~i~~S~DgG~tW~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~g-~-- 143 (327)
T 2xbg_A 81 RFNSVSFQGNEGWIVGEP----------PIMLHTTDGGQSWSQIPLDP----KLPGSPRLIKALGNGSAEMITNVG-A-- 143 (327)
T ss_dssp EEEEEEEETTEEEEEEET----------TEEEEESSTTSSCEECCCCT----TCSSCEEEEEEEETTEEEEEETTC-C--
T ss_pred cEEEEEecCCeEEEEECC----------CeEEEECCCCCCceECcccc----CCCCCeEEEEEECCCCEEEEeCCc-c--
Confidence 233444456788887531 12333222246899987541 111122334433 67888877421 1
Q ss_pred cccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEEC
Q 005655 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (685)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (685)
+++-.-...+|+.+... .+...+++++. .+++|++|-. ..+|.-.-
T Consensus 144 --------------v~~S~DgG~tW~~~~~~----~~~~~~~~~~~~~~~~~~~g~~---------------G~~~~S~d 190 (327)
T 2xbg_A 144 --------------IYRTKDSGKNWQALVQE----AIGVMRNLNRSPSGEYVAVSSR---------------GSFYSTWE 190 (327)
T ss_dssp --------------EEEESSTTSSEEEEECS----CCCCEEEEEECTTSCEEEEETT---------------SSEEEEEC
T ss_pred --------------EEEEcCCCCCCEEeecC----CCcceEEEEEcCCCcEEEEECC---------------CcEEEEeC
Confidence 44443346689998642 22234455544 5666666521 12444432
Q ss_pred C-CCcEEEEEe
Q 005655 339 D-NHRWYPLEL 348 (685)
Q Consensus 339 ~-t~~W~~l~~ 348 (685)
. ...|..+..
T Consensus 191 ~gG~tW~~~~~ 201 (327)
T 2xbg_A 191 PGQTAWEPHNR 201 (327)
T ss_dssp TTCSSCEEEEC
T ss_pred CCCCceeECCC
Confidence 2 568887753
No 187
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=92.61 E-value=2 Score=43.42 Aligned_cols=129 Identities=9% Similarity=-0.005 Sum_probs=63.3
Q ss_pred cEEEEEcCCCcE-EEecCCCCC-CCcceeEEEEE-C----CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccC
Q 005655 102 DLYRYDVEKQEW-KVISSPNSP-PPRSAHQAVSW-K----NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK 174 (685)
Q Consensus 102 dv~~yd~~~~~W-~~l~s~~~P-~~R~~ha~v~~-~----~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~ 174 (685)
.+.+||..+... ..+.....+ ....-.+++.. + +.+++.|+.. ..+.+||+.+..-...-.
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----------g~i~v~d~~~~~~~~~~~- 112 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-----------GIIRIINPITMQCIKHYV- 112 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT-----------CEEEEECTTTCCEEEEEE-
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC-----------CEEEEEEchhceEeeeec-
Confidence 578888886543 233221111 11222223332 3 5677777753 358888888765432211
Q ss_pred CCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEE
Q 005655 175 GCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFL 250 (685)
Q Consensus 175 g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv 250 (685)
.. ...-.++.+ ++.+++.|+.+ ..|.+||+.+.+-...-.... .....-.+++.. ++..++
T Consensus 113 -~~--~~~i~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~ 177 (366)
T 3k26_A 113 -GH--GNAINELKFHPRDPNLLLSVSKD---------HALRLWNIQTDTLVAIFGGVE---GHRDEVLSADYDLLGEKIM 177 (366)
T ss_dssp -SC--CSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTTTEEEEEECSTT---SCSSCEEEEEECTTSSEEE
T ss_pred -CC--CCcEEEEEECCCCCCEEEEEeCC---------CeEEEEEeecCeEEEEecccc---cccCceeEEEECCCCCEEE
Confidence 01 111122233 45677777753 468899998775444321100 111112223332 566777
Q ss_pred EecccCC
Q 005655 251 YGGYSKE 257 (685)
Q Consensus 251 ~GG~~~~ 257 (685)
.|+.++.
T Consensus 178 ~~~~dg~ 184 (366)
T 3k26_A 178 SCGMDHS 184 (366)
T ss_dssp EEETTSC
T ss_pred EecCCCC
Confidence 7777654
No 188
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=92.51 E-value=6.1 Score=45.44 Aligned_cols=213 Identities=12% Similarity=0.034 Sum_probs=103.9
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCccee-EEEEECCEEEEEcCccCCCC---CccccccC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAH-QAVSWKNYLYIFGGEFTSPN---QERFHHYK 156 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~h-a~v~~~~~iyvfGG~~~s~~---~~~~~~~~ 156 (685)
+++.++|+... .|.. ...|+++|+.+++...... +...+ .++..+++.++++....... ........
T Consensus 173 DG~~la~~~~~-~G~e---~~~i~v~dl~tg~~~~~~~-----~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 173 DGRLLAYSVQD-GGSD---WRTVKFVGVADGKPLADEL-----KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp TSSEEEEEEEE-TTCS---EEEEEEEETTTCCEEEEEE-----EEEESCCCEESTTSEEEEEECCCC--------CCCCC
T ss_pred CCCEEEEEEcC-CCCc---eEEEEEEECCCCCCCCccC-----CCceeccEEEECCCEEEEEEecCcccccccccCCCCC
Confidence 45555555421 1221 1369999999998865421 11111 12222223333333222100 00001235
Q ss_pred eEEEEECCCCcE--EEcccCCCCC-CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC--c-eEEeccCC
Q 005655 157 DFWMLDLKTNQW--EQLNLKGCPS-PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K-WQEIKPRF 228 (685)
Q Consensus 157 dv~~yD~~t~~W--~~~~~~g~P~-~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~-W~~v~~~~ 228 (685)
.+|++++.+..- ..+-. .+. +.. ...+.+ +++.+++....... ..+.||++|+.+. . |..+...
T Consensus 244 ~v~~~~lgt~~~~~~lv~~--~~~~~~~-~~~~~~SpDG~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~l~~~- 315 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFA--TPELPKR-GHGASVSSDGRWVVITSSEGTD----PVNTVHVARVTNGKIGPVTALIPD- 315 (741)
T ss_dssp EEEEEETTSCGGGCEEEEC--CTTCTTC-EEEEEECTTSCEEEEEEECTTC----SCCEEEEEEEETTEECCCEEEECS-
T ss_pred EEEEEECCCCchhCEEEec--cCCCCeE-EEEEEECCCCCEEEEEEEccCC----CcceEEEEECCCCCCcccEEecCC-
Confidence 689999877652 12211 111 122 222333 44433443322211 2468999999877 6 8888654
Q ss_pred CCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC--ceeEEeecCCCCCCCcceeEEEEEC
Q 005655 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVHK 306 (685)
Q Consensus 229 ~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~~~~~g~~P~~R~g~s~~~~~ 306 (685)
...... .+...++.||+...... ....++.+|+.+ ..|..+.+.. ...-.+++..+
T Consensus 316 ----~~~~~~-~~~~dg~~l~~~s~~~~-------------~~~~l~~~d~~~~~~~~~~l~~~~----~~~l~~~~~~~ 373 (741)
T 1yr2_A 316 ----LKAQWD-FVDGVGDQLWFVSGDGA-------------PLKKIVRVDLSGSTPRFDTVVPES----KDNLESVGIAG 373 (741)
T ss_dssp ----SSSCEE-EEEEETTEEEEEECTTC-------------TTCEEEEEECSSSSCEEEEEECCC----SSEEEEEEEEB
T ss_pred ----CCceEE-EEeccCCEEEEEECCCC-------------CCCEEEEEeCCCCccccEEEecCC----CCeEEEEEEEC
Confidence 122222 22345778887754321 124588999887 5798886421 11122334447
Q ss_pred CeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 307 ~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
+++++...... ...|+.+++....-.
T Consensus 374 ~~lv~~~~~dg------------~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 374 NRLFASYIHDA------------KSQVLAFDLDGKPAG 399 (741)
T ss_dssp TEEEEEEEETT------------EEEEEEEETTSCEEE
T ss_pred CEEEEEEEECC------------EEEEEEEeCCCCcee
Confidence 77776654432 344777776544333
No 189
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=92.47 E-value=1.8 Score=44.95 Aligned_cols=206 Identities=12% Similarity=0.026 Sum_probs=97.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCC----C-cEEEecCCCCCCCcceeEEEEE--CCEEEEEcCcc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----Q-EWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEF 144 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~----~-~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~ 144 (685)
.++...| ++.+++.|+. + ..+.+|++.+ . .-..+... ...-.+++.. ++.+++.|+..
T Consensus 71 ~~~~~s~--~~~~l~~~~~--d-------g~v~vw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~d 135 (416)
T 2pm9_A 71 NDLDWSH--NNKIIAGALD--N-------GSLELYSTNEANNAINSMARFSNH----SSSVKTVKFNAKQDNVLASGGNN 135 (416)
T ss_dssp EEEEECS--SSSCEEEEES--S-------SCEEEECCSSTTSCCCEEEECCCS----SSCCCEEEECSSSTTBEEEECSS
T ss_pred EEEEECC--CCCeEEEEcc--C-------CeEEEeecccccccccchhhccCC----ccceEEEEEcCCCCCEEEEEcCC
Confidence 3445555 5667777763 2 3578888876 2 22233221 1112233333 25677777753
Q ss_pred CCCCCccccccCeEEEEECCCCc------EEEcccCCCCCCCccceEEEE--C-CEEEEEccccCCCCceeeeceEEEEE
Q 005655 145 TSPNQERFHHYKDFWMLDLKTNQ------WEQLNLKGCPSPRSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLYVFD 215 (685)
Q Consensus 145 ~s~~~~~~~~~~dv~~yD~~t~~------W~~~~~~g~P~~Rsgh~~v~~--~-~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (685)
..+.+||+.+.. -..... ...........+.+ + +.+++.|+.. ..|.+||
T Consensus 136 -----------g~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~v~iwd 194 (416)
T 2pm9_A 136 -----------GEIFIWDMNKCTESPSNYTPLTPG-QSMSSVDEVISLAWNQSLAHVFASAGSS---------NFASIWD 194 (416)
T ss_dssp -----------SCEEBCBTTTTSSCTTTCCCBCCC-CSCCSSCCCCEEEECSSCTTEEEEESSS---------SCEEEEE
T ss_pred -----------CeEEEEECCCCccccccccccccc-cccCCCCCeeEEEeCCCCCcEEEEEcCC---------CCEEEEE
Confidence 347788887764 111100 01111111122333 2 5677777753 4688999
Q ss_pred cCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCC
Q 005655 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (685)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~ 293 (685)
+.+......-............-.+++.. +..+++.|+..+. ...+.+||+.+..-. +.. ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------~~~i~~~d~~~~~~~-~~~--~~ 258 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-------------DPSILIWDLRNANTP-LQT--LN 258 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-------------SCCCCEEETTSTTSC-SBC--CC
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-------------CceEEEEeCCCCCCC-cEE--ee
Confidence 98876544332210000001112223333 3357777776541 012567776653210 000 00
Q ss_pred -CCCcceeEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 294 -PGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 294 -P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
.....-.++++. ++.+++.|+.. +.|.+||+.+..-
T Consensus 259 ~~~~~~v~~~~~s~~~~~~l~s~~~d--------------g~v~~wd~~~~~~ 297 (416)
T 2pm9_A 259 QGHQKGILSLDWCHQDEHLLLSSGRD--------------NTVLLWNPESAEQ 297 (416)
T ss_dssp SCCSSCEEEEEECSSCSSCEEEEESS--------------SEEEEECSSSCCE
T ss_pred cCccCceeEEEeCCCCCCeEEEEeCC--------------CCEEEeeCCCCcc
Confidence 111122333333 56777777753 3488888877643
No 190
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=92.41 E-value=10 Score=40.08 Aligned_cols=217 Identities=13% Similarity=0.169 Sum_probs=113.7
Q ss_pred CCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECC----CCc-EEEcccCCCCCCCccce
Q 005655 110 KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK----TNQ-WEQLNLKGCPSPRSGHR 184 (685)
Q Consensus 110 ~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~----t~~-W~~~~~~g~P~~Rsgh~ 184 (685)
.+.|+...-+..|..-.-|+.|.+++.-|++|=.++.... ..+ .+..|... ... =..++.. .-..-+-.|
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~P---Re~-G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPC 343 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAP---REV-GLFYFPDAFNSPSNYVRRQIPSE-YEPDASEPC 343 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSS---CEE-EEEEETTTTTCTTCCEEEECCGG-GCTTEEEEE
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEeccCCCCc---cee-eEEEecccccCCcceeeeechhh-hccccccch
Confidence 4456655545556666789999998887888754433222 011 12222111 111 1222221 123334556
Q ss_pred EEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC---CCcc
Q 005655 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE---VSTD 261 (685)
Q Consensus 185 ~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~---~~~~ 261 (685)
.-++++.||+.---... +..-..+.+-+..-..|..+..+. ....+..-++..++.|||||--... ....
T Consensus 344 vkyYdgvLyLtTRgt~~---~~~GS~L~rs~d~Gq~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~ 416 (670)
T 3ju4_A 344 IKYYDGVLYLITRGTRG---DRLGSSLHRSRDIGQTWESLRFPH----NVHHTTLPFAKVGDDLIMFGSERAENEWEAGA 416 (670)
T ss_dssp EEEETTEEEEEEEESCT---TSCCCEEEEESSTTSSCEEEECTT----CCCSSCCCEEEETTEEEEEEECSSTTCSSTTC
T ss_pred hhhhCCEEEEEecCcCC---CCCcceeeeecccCCchhheeccc----cccccCCCcceeCCEEEEEeccccccccccCC
Confidence 67789999998543221 223456777777788899998751 2233344456679999999954221 0001
Q ss_pred cCCCCCCceeee-EEEEe-----CCCceeEEeecC---CCCCCCcceeEEEEE-CCeEE-EecceecccC---Ccc----
Q 005655 262 KNQSEKGIIHSD-LWSLD-----PRTWEWSKVKKI---GMPPGPRAGFSMCVH-KKRAL-LFGGVVDMEM---KGD---- 323 (685)
Q Consensus 262 ~~~~~~~~~~~d-v~~yd-----~~t~~W~~~~~~---g~~P~~R~g~s~~~~-~~~iy-vfGG~~~~~~---~~~---- 323 (685)
..+.-.+.+-.. +.+.+ .....|..+... |..-..-+|.+.+++ ++.|| ||||..-... ..+
T Consensus 417 pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~ 496 (670)
T 3ju4_A 417 PDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKD 496 (670)
T ss_dssp CCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCC
T ss_pred CcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccC
Confidence 111111211111 12233 345578888653 333344556655555 67664 7898753221 011
Q ss_pred -ccccccCCcEEEEEC
Q 005655 324 -VIMSLFLNELYGFQL 338 (685)
Q Consensus 324 -~~~~~~~ndl~~yd~ 338 (685)
.-....-.+||+|-+
T Consensus 497 ~~~~~Ghp~dlY~~ri 512 (670)
T 3ju4_A 497 PFKSDGHPSDLYCYKM 512 (670)
T ss_dssp TTSTTCCCCEEEEEEE
T ss_pred ccccCCCCcceEEEEE
Confidence 112344568999875
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=92.26 E-value=3.1 Score=47.58 Aligned_cols=151 Identities=11% Similarity=0.037 Sum_probs=79.4
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCc---eEEeccCCCCC
Q 005655 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPRFGSM 231 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~~~~~ 231 (685)
.+.+|+++..+..|..+... .... ...+..++.||+...... ....|+++|+.+.. |..+.+..
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~--~~~~--~~~~~~~g~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~l~~~~--- 317 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKG--VGAK--YEVHAWKDRFYVLTDEGA------PRQRVFEVDPAKPARASWKEIVPED--- 317 (695)
T ss_dssp EEEEEEECTTCSSCEEEEEC--SSCC--EEEEEETTEEEEEECTTC------TTCEEEEEBTTBCSGGGCEEEECCC---
T ss_pred ceEEEEEcCCCCceEEeecC--CCce--EEEEecCCcEEEEECCCC------CCCEEEEEeCCCCCccCCeEEecCC---
Confidence 36789998878888887652 1111 122224555666543211 13578999987755 88876541
Q ss_pred CCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE-ECCeEE
Q 005655 232 WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRAL 310 (685)
Q Consensus 232 ~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~-~~~~iy 310 (685)
+ ...-..+...++.|++.+.... ...+|.+++....-..+.. |....-.+++. -++..+
T Consensus 318 -~-~~~l~~~~~~~~~lv~~~~~dg--------------~~~l~~~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l 377 (695)
T 2bkl_A 318 -S-SASLLSVSIVGGHLSLEYLKDA--------------TSEVRVATLKGKPVRTVQL----PGVGAASNLMGLEDLDDA 377 (695)
T ss_dssp -S-SCEEEEEEEETTEEEEEEEETT--------------EEEEEEEETTCCEEEECCC----SSSSEECCCBSCTTCSEE
T ss_pred -C-CCeEEEEEEECCEEEEEEEECC--------------EEEEEEEeCCCCeeEEecC----CCCeEEEEeecCCCCCEE
Confidence 1 1112233444888887765443 2458888876543333321 11110011111 133333
Q ss_pred EecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
+|..... ..-..||.||+.+.....+..
T Consensus 378 ~~~~ss~----------~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 378 YYVFTSF----------TTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp EEEEEET----------TEEEEEEEEETTTCCEEEEEE
T ss_pred EEEEcCC----------CCCCEEEEEECCCCcEEEEec
Confidence 3333221 113569999999988766554
No 192
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=92.18 E-value=5 Score=45.95 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=71.1
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCC---CC---CCccceEEEECCEEEEEccccC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC---PS---PRSGHRMVLYKHKIIVFGGFYD 200 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~---P~---~Rsgh~~v~~~~~lyv~GG~~~ 200 (685)
+-++.++.||+.... +.|+.||..|++ |+.-..... +. .....+.++.++.||+...
T Consensus 72 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~--- 136 (677)
T 1kb0_A 72 TPVVVDGIMYVSASW------------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--- 136 (677)
T ss_dssp CCEEETTEEEEECGG------------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---
T ss_pred CCEEECCEEEEECCC------------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC---
Confidence 345679999998652 468899998875 886543110 00 0122345667888888633
Q ss_pred CCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEe
Q 005655 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (685)
-..|+++|..+.+ |+.-..... ........+.++.++.||+..+.... .....++.||
T Consensus 137 -------dg~l~alD~~tG~~~W~~~~~~~~--~~~~~~~~~p~v~~~~v~v~~~~~~~-----------~~~g~v~a~D 196 (677)
T 1kb0_A 137 -------DGRLIALDAATGKEVWHQNTFEGQ--KGSLTITGAPRVFKGKVIIGNGGAEY-----------GVRGYITAYD 196 (677)
T ss_dssp -------TSEEEEEETTTCCEEEEEETTTTC--CSSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred -------CCEEEEEECCCCCEEeeecCCcCc--CcCcccccCcEEECCEEEEEeccccc-----------CCCCEEEEEE
Confidence 2468999998764 876533100 00011222334557877765432110 1234588999
Q ss_pred CCCc--eeEEee
Q 005655 279 PRTW--EWSKVK 288 (685)
Q Consensus 279 ~~t~--~W~~~~ 288 (685)
+.+. .|+.-.
T Consensus 197 ~~tG~~~W~~~~ 208 (677)
T 1kb0_A 197 AETGERKWRWFS 208 (677)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecc
Confidence 8765 587754
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=92.16 E-value=5.7 Score=45.40 Aligned_cols=128 Identities=9% Similarity=0.054 Sum_probs=72.4
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCC------C--cEEEecCCCCCCCcceeEEEEECCEEEEEcC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK------Q--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~------~--~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG 142 (685)
..+....| +++.++++... ... ..+++|++|+.+ . .++.+.... ......+...++.||+.+.
T Consensus 235 ~~~~~~Sp--Dg~~l~~~~~~-~~~---~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 235 MGGAELSD--DGRYVLLSIRE-GCD---PVNRLWYCDLQQESNGITGILKWVKLIDNF---EGEYDYVTNEGTVFTFKTN 305 (710)
T ss_dssp EEEEEECT--TSCEEEEEEEC-SSS---SCCEEEEEEGGGSSSSSCSSCCCEEEECSS---SSCEEEEEEETTEEEEEEC
T ss_pred EEEEEEcC--CCCEEEEEEEc-cCC---CccEEEEEECcccccccCCccceEEeeCCC---CcEEEEEeccCCEEEEEEC
Confidence 34555666 45544444321 111 146899999876 4 688876532 1112222334678888865
Q ss_pred ccCCCCCccccccCeEEEEECCCC---cEEEcccCCCCCCC-ccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcC
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKGCPSPR-SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~---~W~~~~~~g~P~~R-sgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
... ....++++|+.+. .|+.+.+ +... .-..++.. +++|++.....+ ...|+++|+.
T Consensus 306 ~~~--------~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~lv~~~~~~g-------~~~l~~~~~~ 367 (710)
T 2xdw_A 306 RHS--------PNYRLINIDFTDPEESKWKVLVP---EHEKDVLEWVACVRSNFLVLCYLHDV-------KNTLQLHDLA 367 (710)
T ss_dssp TTC--------TTCEEEEEETTSCCGGGCEEEEC---CCSSCEEEEEEEETTTEEEEEEEETT-------EEEEEEEETT
T ss_pred CCC--------CCCEEEEEeCCCCCcccceeccC---CCCCCeEEEEEEEcCCEEEEEEEECC-------EEEEEEEECC
Confidence 422 1357999999876 5888765 2221 22233444 677777665432 4578999986
Q ss_pred CCc-eEEec
Q 005655 218 QFK-WQEIK 225 (685)
Q Consensus 218 t~~-W~~v~ 225 (685)
+.+ ...+.
T Consensus 368 ~g~~~~~l~ 376 (710)
T 2xdw_A 368 TGALLKIFP 376 (710)
T ss_dssp TCCEEEEEC
T ss_pred CCCEEEecC
Confidence 554 34443
No 194
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=92.11 E-value=8.4 Score=44.18 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=70.5
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCC---CC---CCccceEEEECCEEEEEccccC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC---PS---PRSGHRMVLYKHKIIVFGGFYD 200 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~---P~---~Rsgh~~v~~~~~lyv~GG~~~ 200 (685)
+-++.++.||+.+.. +.++.||..|++ |+.-..... +. .....+.++.++.||+.+.
T Consensus 65 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~--- 129 (689)
T 1yiq_A 65 TPIVVDGVMYTTGPF------------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL--- 129 (689)
T ss_dssp CCEEETTEEEEECGG------------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---
T ss_pred cCEEECCEEEEEcCC------------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---
Confidence 345679999997642 458899998874 886432110 00 0112234667888887542
Q ss_pred CCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEe
Q 005655 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (685)
-..|+.+|..|.+ |+.-..... . .......+.++.++.||+-.+.... .....++.||
T Consensus 130 -------dg~l~AlDa~TG~~~W~~~~~~~~-~-~~~~~~~sP~v~~g~v~vg~~~~~~-----------~~~g~v~a~D 189 (689)
T 1yiq_A 130 -------DGRLEAIDAKTGQRAWSVDTRADH-K-RSYTITGAPRVVNGKVVIGNGGAEF-----------GVRGYVTAYD 189 (689)
T ss_dssp -------TSEEEEEETTTCCEEEEEECCSCT-T-SCCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred -------CCEEEEEECCCCCEeeeecCcCCC-C-CCccccCCcEEECCEEEEEeCCCcc-----------CCCCEEEEEE
Confidence 2468999998764 876543100 0 1112222334568888774322110 1234589999
Q ss_pred CCCc--eeEEee
Q 005655 279 PRTW--EWSKVK 288 (685)
Q Consensus 279 ~~t~--~W~~~~ 288 (685)
+.+. .|+.-.
T Consensus 190 ~~tG~~~W~~~~ 201 (689)
T 1yiq_A 190 AETGKEAWRFYT 201 (689)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecc
Confidence 8765 588753
No 195
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=92.04 E-value=9.7 Score=37.26 Aligned_cols=106 Identities=9% Similarity=0.073 Sum_probs=56.2
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (685)
++. ++.|+.. ..+.+||+.+.+-...-.. ....-.+++...+..++.|+..+.
T Consensus 195 ~~~-~~~~~~d---------g~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~l~~~~~dg~----------- 247 (313)
T 3odt_A 195 DGH-FISCSND---------GLIKLVDMHTGDVLRTYEG------HESFVYCIKLLPNGDIVSCGEDRT----------- 247 (313)
T ss_dssp TTE-EEEEETT---------SEEEEEETTTCCEEEEEEC------CSSCEEEEEECTTSCEEEEETTSE-----------
T ss_pred CCe-EEEccCC---------CeEEEEECCchhhhhhhhc------CCceEEEEEEecCCCEEEEecCCE-----------
Confidence 566 6666642 4688999887643322111 111122333332224667776554
Q ss_pred ceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
+.+||+.+......-.. +.. .-.++++. +++ ++.|+.. +.|.+||+.+.+|..
T Consensus 248 -----v~iwd~~~~~~~~~~~~---~~~-~i~~~~~~~~~~-~~~~~~d--------------g~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 248 -----VRIWSKENGSLKQVITL---PAI-SIWSVDCMSNGD-IIVGSSD--------------NLVRIFSQEKSRWAS 301 (313)
T ss_dssp -----EEEECTTTCCEEEEEEC---SSS-CEEEEEECTTSC-EEEEETT--------------SCEEEEESCGGGCCC
T ss_pred -----EEEEECCCCceeEEEec---cCc-eEEEEEEccCCC-EEEEeCC--------------CcEEEEeCCCCceee
Confidence 78888877754443321 111 12334444 455 4556542 459999998876653
No 196
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=91.99 E-value=5.1 Score=38.31 Aligned_cols=145 Identities=17% Similarity=0.361 Sum_probs=78.0
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCC--CcEE--EecC--CCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWK--VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~--~~W~--~l~s--~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~ 152 (685)
++++|+|=|. .+|+|+... .... .+.. +.+|. .--|+... ++++|+|-|
T Consensus 16 ~g~~yfFkg~-----------~~Wr~~~~~~~~~~~p~~Is~~w~glP~--~IDAa~~~~~~~~~yfFkG---------- 72 (195)
T 1itv_A 16 GNQLYLFKDG-----------KYWRFSEGRGSRPQGPFLIADKWPALPR--KLDSVFEEPLSKKLFFFSG---------- 72 (195)
T ss_dssp TTEEEEEETT-----------EEEEECCSSSCCCEEEEEHHHHCTTSCS--SCSEEEECTTTCCEEEEET----------
T ss_pred CCEEEEEECC-----------EEEEEECCccccCCCcEEhhhccCCCCC--CccEEEEECCCCeEEEEeC----------
Confidence 6889999883 467777654 2222 1211 22232 22333333 578999988
Q ss_pred cccCeEEEEECCCCcE-EEcccCCCCCC--CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE-----Ee
Q 005655 153 HHYKDFWMLDLKTNQW-EQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----EI 224 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~W-~~~~~~g~P~~--Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-----~v 224 (685)
+.+|+|+..+..- ..|..-|+|.. ....++...++++|+|-| +..|+||..+.+-. .+
T Consensus 73 ---~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-----------~~ywr~d~~~~~~~~gyPr~i 138 (195)
T 1itv_A 73 ---RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------RRLWRFDVKAQMVDPRSASEV 138 (195)
T ss_dssp ---TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------TEEEEEETTTTEECGGGCEEH
T ss_pred ---CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-----------CEEEEEeCCcccccCCCccCh
Confidence 4688888643211 11222244543 333333322679999977 45799998765311 11
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
...-.+ +|. .-.++...++.+|+|-|.. .|+||..+.+
T Consensus 139 ~~~w~G-vp~--~idaa~~~~g~~Yffkg~~------------------y~~~~~~~~~ 176 (195)
T 1itv_A 139 DRMFPG-VPL--DTHDVFQFREKAYFCQDRF------------------YWRVSSRSEL 176 (195)
T ss_dssp HHHSTT-SCS--SCSEEEEETTEEEEEETTE------------------EEEEECCTTC
T ss_pred hhcCCC-CCC--CCCEEEEeCCeEEEEeCCE------------------EEEEECCccE
Confidence 100001 121 1223444478999997642 7788876654
No 197
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=91.68 E-value=4.8 Score=40.47 Aligned_cols=215 Identities=9% Similarity=-0.038 Sum_probs=104.1
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCC
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~ 148 (685)
...+.+..|. ++.||+.+-. .+.+++|++ +.....+..+ .. ..++++.. ++.||+....
T Consensus 46 ~~egp~~~~~-g~~l~~~d~~---------~~~i~~~~~-~g~~~~~~~~---~~-~~~gl~~d~dG~l~v~~~~----- 105 (305)
T 3dr2_A 46 WSEGPAWWEA-QRTLVWSDLV---------GRRVLGWRE-DGTVDVLLDA---TA-FTNGNAVDAQQRLVHCEHG----- 105 (305)
T ss_dssp SEEEEEEEGG-GTEEEEEETT---------TTEEEEEET-TSCEEEEEES---CS-CEEEEEECTTSCEEEEETT-----
T ss_pred CccCCeEeCC-CCEEEEEECC---------CCEEEEEeC-CCCEEEEeCC---CC-ccceeeECCCCCEEEEECC-----
Confidence 3445666662 3457777642 146889998 4555544321 11 12333333 5778876321
Q ss_pred CccccccCeEEEEECCCCcEEEcccCC--CCCCCccceEEEE-CCEEEEE----ccccC---C-CCceeeeceEEEEEcC
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNLKG--CPSPRSGHRMVLY-KHKIIVF----GGFYD---T-LREVRYYNDLYVFDLD 217 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g--~P~~Rsgh~~v~~-~~~lyv~----GG~~~---~-~~~~~~~~dv~~yD~~ 217 (685)
.+.+++|++. ++.+.+.... .+..+.. .+++- ++.||+. |-... . .........|++||+.
T Consensus 106 ------~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~-~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 106 ------RRAITRSDAD-GQAHLLVGRYAGKRLNSPN-DLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp ------TTEEEEECTT-SCEEEEECEETTEECSCCC-CEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred ------CCEEEEECCC-CCEEEEEeccCCCccCCCC-CEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 1468889886 6666654311 1111112 23333 6788884 33211 0 0000113579999998
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG 295 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~ 295 (685)
+.++..+. . . ..+ .+++.. +..||+....... .....+++|++..............+.
T Consensus 178 ~g~~~~~~-~--~--~~p---~gl~~spdg~~lyv~~~~~~~-----------~~~~~i~~~~~~~~~l~~~~~~~~~~~ 238 (305)
T 3dr2_A 178 GSPLQRMA-D--L--DHP---NGLAFSPDEQTLYVSQTPEQG-----------HGSVEITAFAWRDGALHDRRHFASVPD 238 (305)
T ss_dssp SCCCEEEE-E--E--SSE---EEEEECTTSSEEEEEECCC--------------CCCEEEEEEEETTEEEEEEEEECCSS
T ss_pred CCcEEEEe-c--C--CCC---cceEEcCCCCEEEEEecCCcC-----------CCCCEEEEEEecCCCccCCeEEEECCC
Confidence 88887765 2 0 111 223333 4457776432110 012358888876544222111000010
Q ss_pred CcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 296 PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 296 ~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
..-.++++- +++||+..+ +.|++|++.......+..
T Consensus 239 -~~pdgi~~d~~G~lwv~~~----------------~gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 239 -GLPDGFCVDRGGWLWSSSG----------------TGVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp -SCCCSEEECTTSCEEECCS----------------SEEEEECTTSCEEEEEEC
T ss_pred -CCCCeEEECCCCCEEEecC----------------CcEEEECCCCCEEEEEEC
Confidence 011123333 566776542 238999997666555554
No 198
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=91.66 E-value=6.3 Score=39.16 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=54.1
Q ss_pred ccEEEEEcCCCcEEE-ecCCCCCCCc-ceeEEEEE-C-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC
Q 005655 101 GDLYRYDVEKQEWKV-ISSPNSPPPR-SAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC 176 (685)
Q Consensus 101 ndv~~yd~~~~~W~~-l~s~~~P~~R-~~ha~v~~-~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~ 176 (685)
+.|++||+.+.+... +.... .. .-+.+++. + ..+|+.++. -..+++||+.+..-...-..+.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIAD---AGPTPMVPMVAPGGRIAYATVNK-----------SESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTT---CTTCCCCEEECTTSSEEEEEETT-----------TTEEEEEETTTCCEEEEEECCB
T ss_pred CeEEEEECCCCcEEEEEEcCC---CCCCccceEEcCCCCEEEEEeCC-----------CCeEEEEECCCCCeEeeEEcCC
Confidence 468999998876543 22211 10 11233333 3 477877642 2469999998887543222111
Q ss_pred CC--CCccceEEEE-C-CEEEEEccccCCCCceee---eceEEEEEcCCCceEE
Q 005655 177 PS--PRSGHRMVLY-K-HKIIVFGGFYDTLREVRY---YNDLYVFDLDQFKWQE 223 (685)
Q Consensus 177 P~--~Rsgh~~v~~-~-~~lyv~GG~~~~~~~~~~---~~dv~~yD~~t~~W~~ 223 (685)
+. ...-+.+++. + ++||+......... ..+ ...|++||+.+.+...
T Consensus 77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 77 PEERVKSLFGAALSPDGKTLAIYESPVRLEL-THFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECS-SCEEECCCEEEEEETTTTEEEE
T ss_pred cccccccccceEECCCCCEEEEEeccccccc-ccccccCceEEEEECCCCcEEE
Confidence 10 0011233333 3 46776642110000 011 3689999998876543
No 199
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=91.61 E-value=7 Score=44.37 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=29.0
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
..+.+||+.+..-...-. .... .-.++.+ ++.+++.||.+ ..|.+||+.+.+
T Consensus 541 ~~v~vwd~~~~~~~~~~~--~h~~--~v~~v~~spdg~~l~sg~~D---------g~i~iwd~~~~~ 594 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLA--GHTG--YVSTVAVSPDGSLCASGGKD---------GVVLLWDLAEGK 594 (694)
T ss_dssp SCEEEEETTTCCEEEEEC--CCSS--CEEEEEECTTSSEEEEEETT---------SBCEEEETTTTE
T ss_pred CeEEEEECCCCcEEEEEc--CCCC--CEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCc
Confidence 347788887765433211 1111 1122333 56777777753 357788887764
No 200
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=91.60 E-value=8 Score=44.14 Aligned_cols=124 Identities=13% Similarity=0.066 Sum_probs=70.6
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCCC------CCCccceEEEECCEEEEEccccC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP------SPRSGHRMVLYKHKIIVFGGFYD 200 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P------~~Rsgh~~v~~~~~lyv~GG~~~ 200 (685)
+-++.++.||+.... +.++.||..|++ |+.-...... ......+.++.+++||+...
T Consensus 61 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 125 (668)
T 1kv9_A 61 TPLFHDGVIYTSMSW------------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--- 125 (668)
T ss_dssp CCEEETTEEEEEEGG------------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---
T ss_pred CCEEECCEEEEECCC------------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---
Confidence 345679999997642 468899988774 8864321100 00112234567888887542
Q ss_pred CCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEe
Q 005655 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (685)
...|+.||..+.+ |+.-...+. .......+.++.++.||+..+.... .....++.||
T Consensus 126 -------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~~~v~vg~~~~~~-----------~~~g~v~a~D 184 (668)
T 1kv9_A 126 -------DGRLIALDAKTGKAIWSQQTTDPA---KPYSITGAPRVVKGKVIIGNGGAEY-----------GVRGFVSAYD 184 (668)
T ss_dssp -------TSEEEEEETTTCCEEEEEECSCTT---SSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred -------CCEEEEEECCCCCEeeeeccCCCC---CcceecCCCEEECCEEEEeCCCCCc-----------CCCCEEEEEE
Confidence 2468999988764 876543210 1112222334568877764322110 1234589999
Q ss_pred CCCc--eeEEee
Q 005655 279 PRTW--EWSKVK 288 (685)
Q Consensus 279 ~~t~--~W~~~~ 288 (685)
+.+. .|+.-.
T Consensus 185 ~~tG~~~W~~~~ 196 (668)
T 1kv9_A 185 ADTGKLAWRFYT 196 (668)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecc
Confidence 8765 688754
No 201
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.60 E-value=4.1 Score=41.57 Aligned_cols=104 Identities=4% Similarity=-0.113 Sum_probs=57.2
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (685)
.+.+++.|+.+ ..+.+||+.+..-..+... .....-.+++.. ++.+++.|+.++.
T Consensus 138 ~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~-----~~~~~i~~~~~~pdg~~lasg~~dg~---------- 193 (343)
T 3lrv_A 138 NTEYFIWADNR---------GTIGFQSYEDDSQYIVHSA-----KSDVEYSSGVLHKDSLLLALYSPDGI---------- 193 (343)
T ss_dssp -CCEEEEEETT---------CCEEEEESSSSCEEEEECC-----CSSCCCCEEEECTTSCEEEEECTTSC----------
T ss_pred CCCEEEEEeCC---------CcEEEEECCCCcEEEEEec-----CCCCceEEEEECCCCCEEEEEcCCCE----------
Confidence 45566767753 3688999988776444322 111112233333 6778888887765
Q ss_pred CceeeeEEEEeCCCceeE--EeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 268 GIIHSDLWSLDPRTWEWS--KVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~--~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
+.+||+.+..-. .+.. .....-.++++. ++..++.|+ . +.|.+||+.+.
T Consensus 194 ------i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~-~--------------~~v~iwd~~~~ 245 (343)
T 3lrv_A 194 ------LDVYNLSSPDQASSRFPV----DEEAKIKEVKFADNGYWMVVEC-D--------------QTVVCFDLRKD 245 (343)
T ss_dssp ------EEEEESSCTTSCCEECCC----CTTSCEEEEEECTTSSEEEEEE-S--------------SBEEEEETTSS
T ss_pred ------EEEEECCCCCCCccEEec----cCCCCEEEEEEeCCCCEEEEEe-C--------------CeEEEEEcCCC
Confidence 778888765432 1111 011112233333 566666666 2 24889998654
No 202
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.59 E-value=3.6 Score=50.10 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=71.6
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~ 150 (685)
++++.| ++.+++.||. + +.+.+||+.+.+-...-... ...-.++.+ ++.+++.||..
T Consensus 620 ~~~~s~--~~~~l~s~~~--d-------~~i~vw~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~d------ 678 (1249)
T 3sfz_A 620 HACFSQ--DGQRIASCGA--D-------KTLQVFKAETGEKLLDIKAH----EDEVLCCAFSSDDSYIATCSAD------ 678 (1249)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEECC--CCCEEEEEeC--C-------CeEEEEECCCCCEEEEeccC----CCCEEEEEEecCCCEEEEEeCC------
Confidence 445555 5677777772 2 36889999887654322211 111222333 45666777642
Q ss_pred cccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE----CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
..+.+||+.++.....-. .......++.+ ++.+++.|+.+ ..|.+||+.+......-.
T Consensus 679 -----~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~sg~~d---------~~v~vwd~~~~~~~~~~~ 740 (1249)
T 3sfz_A 679 -----KKVKIWDSATGKLVHTYD----EHSEQVNCCHFTNKSNHLLLATGSND---------FFLKLWDLNQKECRNTMF 740 (1249)
T ss_dssp -----SEEEEEETTTCCEEEEEE----CCSSCEEEEEECSSSSCCEEEEEETT---------SCEEEEETTSSSEEEEEC
T ss_pred -----CeEEEEECCCCceEEEEc----CCCCcEEEEEEecCCCceEEEEEeCC---------CeEEEEECCCcchhheec
Confidence 458899998876543222 11112222333 23455555532 458889988776443322
Q ss_pred CCCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 227 ~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
. . ..+ -.+++.. ++.+++.|+.++.
T Consensus 741 ~--h--~~~--v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 741 G--H--TNS--VNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp C--C--SSC--EEEEEECSSTTEEEEEESSSE
T ss_pred C--C--CCC--EEEEEEecCCCEEEEEECCCe
Confidence 1 0 111 1122222 5667777776554
No 203
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=91.53 E-value=1.9 Score=43.64 Aligned_cols=93 Identities=11% Similarity=0.092 Sum_probs=47.0
Q ss_pred cEEEEEcCCCc--EEEecCCCCCCCcceeEEEE-----ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccC
Q 005655 102 DLYRYDVEKQE--WKVISSPNSPPPRSAHQAVS-----WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK 174 (685)
Q Consensus 102 dv~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~-----~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~ 174 (685)
.+.+||+.+.. ...+........+.-.+++. .++.+++.|+.. ..+.+||+.+..-.....
T Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~- 207 (357)
T 3i2n_A 140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-----------GDIKLFDLRNMALRWETN- 207 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-----------SEEEEEETTTTEEEEEEE-
T ss_pred eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-----------CeEEEEECccCceeeecC-
Confidence 57888887764 33443322111222233331 246666666642 458899998876533322
Q ss_pred CCCCCCccceEEEE----CCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 175 GCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 175 g~P~~Rsgh~~v~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
.. ..-.+++.. ++.+++.|+.. ..+.+||+.+
T Consensus 208 -~~--~~v~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~ 243 (357)
T 3i2n_A 208 -IK--NGVCSLEFDRKDISMNKLVATSLE---------GKFHVFDMRT 243 (357)
T ss_dssp -CS--SCEEEEEESCSSSSCCEEEEEEST---------TEEEEEEEEE
T ss_pred -CC--CceEEEEcCCCCCCCCEEEEECCC---------CeEEEEeCcC
Confidence 11 112223332 45666666643 3566777654
No 204
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=91.41 E-value=5.6 Score=39.63 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=37.1
Q ss_pred CEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC--ceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCc
Q 005655 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKG 322 (685)
Q Consensus 246 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~ 322 (685)
+.+++.|+.++. +.++|+.+ ..|........ .....-.+++.. ++.+++.||..
T Consensus 219 ~~~las~s~D~~----------------v~iWd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D------ 275 (297)
T 2pm7_B 219 RSYMASVSQDRT----------------CIIWTQDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGD------ 275 (297)
T ss_dssp SEEEEEEETTSC----------------EEEEEESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETT------
T ss_pred ceEEEEEECCCc----------------EEEEEeCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCC------
Confidence 478888887765 45555443 44654322100 111222333333 56777777653
Q ss_pred cccccccCCcEEEEECC-CCcEEEEEe
Q 005655 323 DVIMSLFLNELYGFQLD-NHRWYPLEL 348 (685)
Q Consensus 323 ~~~~~~~~ndl~~yd~~-t~~W~~l~~ 348 (685)
+.|.+|++. ...|..+..
T Consensus 276 --------~~v~lw~~~~~g~w~~~~~ 294 (297)
T 2pm7_B 276 --------NKVTLWKENLEGKWEPAGE 294 (297)
T ss_dssp --------SCEEEEEECTTSCEEEC--
T ss_pred --------CcEEEEEECCCCcEEeccc
Confidence 236777765 457876643
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=91.23 E-value=8.1 Score=44.41 Aligned_cols=127 Identities=9% Similarity=0.057 Sum_probs=71.6
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC--c-EEEecCCCCCCCcceeEEEEECCEEEEEcCccCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--E-WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSP 147 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~-W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~ 147 (685)
..+....| +++.++|.... +. ...+++|++|+.+. . |+.+.... ... ...+...++.||+......
T Consensus 270 ~~~~~~Sp--DG~~l~~~~~~--~~--~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~-~~~~~~dg~~l~~~s~~~~-- 338 (741)
T 1yr2_A 270 GHGASVSS--DGRWVVITSSE--GT--DPVNTVHVARVTNGKIGPVTALIPDL--KAQ-WDFVDGVGDQLWFVSGDGA-- 338 (741)
T ss_dssp EEEEEECT--TSCEEEEEEEC--TT--CSCCEEEEEEEETTEECCCEEEECSS--SSC-EEEEEEETTEEEEEECTTC--
T ss_pred EEEEEECC--CCCEEEEEEEc--cC--CCcceEEEEECCCCCCcccEEecCCC--Cce-EEEEeccCCEEEEEECCCC--
Confidence 44555565 55544444321 10 12468999999887 7 88886532 111 1222234677877754321
Q ss_pred CCccccccCeEEEEECCC--CcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 148 NQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t--~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
....++++|+.+ ..|..+.+. ... .-..+...+++|++....++ ...||++++....-..+
T Consensus 339 ------~~~~l~~~d~~~~~~~~~~l~~~--~~~-~l~~~~~~~~~lv~~~~~dg-------~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 339 ------PLKKIVRVDLSGSTPRFDTVVPE--SKD-NLESVGIAGNRLFASYIHDA-------KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp ------TTCEEEEEECSSSSCEEEEEECC--CSS-EEEEEEEEBTEEEEEEEETT-------EEEEEEEETTSCEEEEC
T ss_pred ------CCCEEEEEeCCCCccccEEEecC--CCC-eEEEEEEECCEEEEEEEECC-------EEEEEEEeCCCCceeec
Confidence 125699999988 579887652 111 11123334778877765432 45789999755434444
No 206
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=91.20 E-value=2.4 Score=47.00 Aligned_cols=96 Identities=8% Similarity=-0.062 Sum_probs=54.6
Q ss_pred EEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCcc
Q 005655 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG 182 (685)
Q Consensus 103 v~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsg 182 (685)
+.+||+.+...+.+.... . ...+..-+++.+++++..... ...+|++|+.++.+..+.. .+ ..
T Consensus 134 ~~l~d~~~g~~~~l~~~~--~---~~~~~spDG~~la~~~~~~~~-------~~~i~~~d~~~g~~~~l~~--~~-~~-- 196 (582)
T 3o4h_A 134 VALYALDGGGLRELARLP--G---FGFVSDIRGDLIAGLGFFGGG-------RVSLFTSNLSSGGLRVFDS--GE-GS-- 196 (582)
T ss_dssp EEEEEEETTEEEEEEEES--S---CEEEEEEETTEEEEEEEEETT-------EEEEEEEETTTCCCEEECC--SS-CE--
T ss_pred ceEEEccCCcEEEeecCC--C---ceEEECCCCCEEEEEEEcCCC-------CeEEEEEcCCCCCceEeec--CC-Cc--
Confidence 447788888877776422 2 112222345555555543221 2459999999999887754 11 11
Q ss_pred ceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 183 h~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
.....+ +++.++.+...+ ...|+++|+.+....
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~-------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAR-------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEEECTTSCEEEEEECSS-------CEEEEEECTTTCCEE
T ss_pred cccceECCCCCEEEEccCCC-------eeEEEEEcCCCCcEE
Confidence 123333 454444333211 247999999998877
No 207
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=91.18 E-value=9.7 Score=42.57 Aligned_cols=125 Identities=12% Similarity=0.159 Sum_probs=69.9
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEEC-CCCc--EEEcccCCC---CCC---CccceEEEECCEEEEEcccc
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTNQ--WEQLNLKGC---PSP---RSGHRMVLYKHKIIVFGGFY 199 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~-~t~~--W~~~~~~g~---P~~---Rsgh~~v~~~~~lyv~GG~~ 199 (685)
+-++.++.||+.... .+.++.||. .|++ |+.-..... +.. ....+.++.++.||+...
T Consensus 57 ~P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-- 123 (571)
T 2ad6_A 57 APLVIGDMMYVHSAF-----------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-- 123 (571)
T ss_dssp CCEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--
T ss_pred ccEEECCEEEEEeCC-----------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC--
Confidence 345679999998652 146899999 7764 886433110 000 112235667888888643
Q ss_pred CCCCceeeeceEEEEEcCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEE
Q 005655 200 DTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL 277 (685)
Q Consensus 200 ~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y 277 (685)
...|+++|..+. .|+.-..... .......+.++.++.||+-.+.... .....++.|
T Consensus 124 --------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~g~v~vg~~~~~~-----------~~~g~v~a~ 181 (571)
T 2ad6_A 124 --------NGHLLALDAKTGKINWEVEVCDPK---VGSTLTQAPFVAKDTVLMGCSGAEL-----------GVRGAVNAF 181 (571)
T ss_dssp --------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEEECBCGGG-----------TCCCEEEEE
T ss_pred --------CCEEEEEECCCCCEEEEecCCCCC---ccceeccCCEEECCEEEEEecCCcc-----------CCCCEEEEE
Confidence 246899999876 4875432100 0001122234458887765432110 112358899
Q ss_pred eCCCc--eeEEee
Q 005655 278 DPRTW--EWSKVK 288 (685)
Q Consensus 278 d~~t~--~W~~~~ 288 (685)
|+.+. .|+.-.
T Consensus 182 D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 182 DLKTGELKWRAFA 194 (571)
T ss_dssp ETTTCCEEEEEES
T ss_pred ECCCCcEEEEEcc
Confidence 98754 687653
No 208
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=91.12 E-value=3.3 Score=42.65 Aligned_cols=205 Identities=14% Similarity=0.111 Sum_probs=96.9
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
..++++|+.+.+-..+.... .+..+....- ++..++|....... .....+|.+|+.+.....+.. .+..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~---~~~~~~~~sp~dg~~l~~~~~~~~~-----~~~~~l~~~d~~~~~~~~l~~--~~~~ 237 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQEN---QWLGHPIYRPYDDSTVAFCHEGPHD-----LVDARMWLINEDGTNMRKVKT--HAEG 237 (388)
T ss_dssp EEEEEEETTTCCEEEEEEES---SCEEEEEEETTEEEEEEEEECSCTT-----TSSCSEEEEETTSCCCEESCC--CCTT
T ss_pred ceEEEEECCCCceEEeecCC---ccccccEECCCCCCEEEEEEecCCC-----CCcceEEEEeCCCCceEEeee--CCCC
Confidence 57999999998877765421 2223333332 34444443322110 123589999998887776654 1111
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCC-CCccceeEEEeCCEEEEEe----
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYG---- 252 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P-~~Rs~~s~~~~~~~Iyv~G---- 252 (685)
. ......+ +++.++|....... ....|+++|+.+.+-..+...+..... ....+..+...+..|++..
T Consensus 238 ~-~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 312 (388)
T 3pe7_A 238 E-SCTHEFWVPDGSALVYVSYLKGS----PDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS 312 (388)
T ss_dssp E-EEEEEEECTTSSCEEEEEEETTC----CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred c-ccccceECCCCCEEEEEecCCCC----CcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence 1 1112234 45433333322111 113599999999887776554210000 0001112222233333321
Q ss_pred cccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCC----Cc--ceeEEEEE-CCeEEEecceecccCCcccc
Q 005655 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG----PR--AGFSMCVH-KKRALLFGGVVDMEMKGDVI 325 (685)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~----~R--~g~s~~~~-~~~iyvfGG~~~~~~~~~~~ 325 (685)
|+.. .-...++++|+.+.....+........ .+ ...+.+.. +++.++|....+
T Consensus 313 ~~~~------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-------- 372 (388)
T 3pe7_A 313 GYKI------------ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-------- 372 (388)
T ss_dssp ----------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT--------
T ss_pred cccc------------CCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC--------
Confidence 1110 112469999999888777754321000 00 11222222 565555544321
Q ss_pred ccccCCcEEEEECCCCcE
Q 005655 326 MSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 326 ~~~~~ndl~~yd~~t~~W 343 (685)
-...||.+++....|
T Consensus 373 ---g~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 373 ---GKPALYLATLPESVW 387 (388)
T ss_dssp ---SSCEEEEEECCGGGG
T ss_pred ---CceeEEEEECChhcc
Confidence 135699999877665
No 209
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.08 E-value=5.4 Score=41.47 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=71.6
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccc-eEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCCC--ceEEeccCCC
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGH-RMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFG 229 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh-~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~ 229 (685)
..+.+||+.++.-...-....+...... ..+.+ ++.+++.||.+ ..|.+||+... .-..+...
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D---------~~v~~wd~~~~~~~~~~~~~h-- 248 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD---------TTVRLWDLRITSRAVRTYHGH-- 248 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT---------SCEEEEETTTTCCCCEEECCC--
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC---------CeEEEEECCCCCcceEEECCc--
Confidence 3477889888765443221112222111 12222 56788888864 35778887532 11111111
Q ss_pred CCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCC--CCCc-ceeEEEEE
Q 005655 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP--PGPR-AGFSMCVH 305 (685)
Q Consensus 230 ~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~--P~~R-~g~s~~~~ 305 (685)
..+ -.+++.. ++..++.|+.++. +.++|+.+..-...-..... .... .-.++++.
T Consensus 249 ---~~~--v~~v~~~p~~~~l~s~s~D~~----------------i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 249 ---EGD--INSVKFFPDGQRFGTGSDDGT----------------CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp ---SSC--CCEEEECTTSSEEEEECSSSC----------------EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred ---CCC--eEEEEEecCCCeEEEEcCCCe----------------EEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 001 1122333 6677888887765 77888877654333211100 0001 11233333
Q ss_pred -CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 306 -~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
++++++.|+.. ..|++||+.+..-
T Consensus 308 ~~g~~l~~g~~d--------------g~i~vwd~~~~~~ 332 (380)
T 3iz6_a 308 ISGRLLFAGYSN--------------GDCYVWDTLLAEM 332 (380)
T ss_dssp SSSSEEEEECTT--------------SCEEEEETTTCCE
T ss_pred CCCCEEEEEECC--------------CCEEEEECCCCce
Confidence 67777777643 3599999876543
No 210
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=90.77 E-value=16 Score=40.24 Aligned_cols=138 Identities=9% Similarity=0.023 Sum_probs=71.1
Q ss_pred CeEEEEEC--CCCcEEEcccCCCCCCCccceEEEEC-CEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCC
Q 005655 156 KDFWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (685)
Q Consensus 156 ~dv~~yD~--~t~~W~~~~~~g~P~~Rsgh~~v~~~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (685)
..+|.+++ ....- .+.. .+..+ ..++..+ +.++++.+.. +.+.+||+.+.....+...
T Consensus 90 ~~l~~~~~~~~g~~~-~l~~--~~~~~--~~~~s~dg~~~~~~s~~~---------~~~~l~d~~~g~~~~l~~~----- 150 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLEA--VKPMR--ILSGVDTGEAVVFTGATE---------DRVALYALDGGGLRELARL----- 150 (582)
T ss_dssp EEEEEEETTSTTCCE-ECTT--SCSBE--EEEEEECSSCEEEEEECS---------SCEEEEEEETTEEEEEEEE-----
T ss_pred eEEEEEeccCCCccc-cccC--CCCce--eeeeCCCCCeEEEEecCC---------CCceEEEccCCcEEEeecC-----
Confidence 46888887 44332 3332 12111 2233333 4555555432 2334778888877777654
Q ss_pred CCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEE
Q 005655 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (685)
Q Consensus 233 P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyv 311 (685)
+. ...++.. +++.+++++.... -...+|++|+.+..+..+... .....+.+.. +++.++
T Consensus 151 ~~--~~~~~sp-DG~~la~~~~~~~------------~~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 151 PG--FGFVSDI-RGDLIAGLGFFGG------------GRVSLFTSNLSSGGLRVFDSG-----EGSFSSASISPGMKVTA 210 (582)
T ss_dssp SS--CEEEEEE-ETTEEEEEEEEET------------TEEEEEEEETTTCCCEEECCS-----SCEEEEEEECTTSCEEE
T ss_pred CC--ceEEECC-CCCEEEEEEEcCC------------CCeEEEEEcCCCCCceEeecC-----CCccccceECCCCCEEE
Confidence 22 2222223 4444455444322 123499999998888877432 1112233333 555554
Q ss_pred ecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
.+...+ ...|++||+.+....
T Consensus 211 ~~~~~~------------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 211 GLETAR------------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEECSS------------CEEEEEECTTTCCEE
T ss_pred EccCCC------------eeEEEEEcCCCCcEE
Confidence 322211 246899999888776
No 211
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=90.73 E-value=1.4 Score=44.63 Aligned_cols=119 Identities=10% Similarity=0.084 Sum_probs=60.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE---CCEEEEEcCccCCCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyvfGG~~~s~~~ 149 (685)
++.+.| ++.+++.|+. + +.+.+||+.++....+..... ....-.+++.. ++.+++.|+.+
T Consensus 18 ~v~~s~--~g~~lasgs~--D-------~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D----- 80 (316)
T 3bg1_A 18 DAQMDY--YGTRLATCSS--D-------RSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYD----- 80 (316)
T ss_dssp EEEECG--GGCEEEEEET--T-------TEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETT-----
T ss_pred EeeEcC--CCCEEEEEeC--C-------CeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECC-----
Confidence 344445 5677777772 2 357778887765432221110 01111222222 25677777753
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--C--CEEEEEccccCCCCceeeeceEEEEEcCCC-ceEEe
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEI 224 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v 224 (685)
..+.+||+.+..|..+.. +......-.++.+ + +.+++.|+.+ ..+.+||+.+. .|...
T Consensus 81 ------~~v~iWd~~~~~~~~~~~--~~~h~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 81 ------RKVIIWREENGTWEKSHE--HAGHDSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTGEGQWEVK 143 (316)
T ss_dssp ------SCEEEECCSSSCCCEEEE--ECCCSSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECSSSCEEEC
T ss_pred ------CEEEEEECCCCcceEEEE--ccCCCCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCCCCCccee
Confidence 347788888877755432 1111111223333 2 4567777653 35667777654 46543
Q ss_pred c
Q 005655 225 K 225 (685)
Q Consensus 225 ~ 225 (685)
.
T Consensus 144 ~ 144 (316)
T 3bg1_A 144 K 144 (316)
T ss_dssp C
T ss_pred e
Confidence 3
No 212
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=90.69 E-value=9.5 Score=38.23 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=59.5
Q ss_pred eEEEEeccCC---CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 72 CSLNINPLKE---TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~---~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
.++...| + +.+++.|+. + +.+.+||+.+.......... .....-.+++.. ++.+++.|+..
T Consensus 43 ~~~~~~~--~~~~g~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d--- 107 (368)
T 3mmy_A 43 GCLSFSP--PTLPGNFLIAGSW--A-------NDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCD--- 107 (368)
T ss_dssp EEEEECC--TTSSSEEEEEEET--T-------SEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETT---
T ss_pred EEEEEcC--CCCCceEEEEECC--C-------CcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCC---
Confidence 3444554 3 478888773 2 35788888863322111100 011111223333 45566666642
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEE---ECCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL---YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~---~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
..+.+||+.+.....+.. ...+ -.++.. -++.+++.|+.+ ..|.+||+.+.+
T Consensus 108 --------g~v~iwd~~~~~~~~~~~--~~~~--v~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 108 --------KTAKMWDLSSNQAIQIAQ--HDAP--VKTIHWIKAPNYSCVMTGSWD---------KTLKFWDTRSSN 162 (368)
T ss_dssp --------SEEEEEETTTTEEEEEEE--CSSC--EEEEEEEECSSCEEEEEEETT---------SEEEEECSSCSS
T ss_pred --------CcEEEEEcCCCCceeecc--ccCc--eEEEEEEeCCCCCEEEEccCC---------CcEEEEECCCCc
Confidence 458899999887665433 1111 122222 256777777753 468889987764
No 213
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=90.56 E-value=15 Score=36.59 Aligned_cols=180 Identities=8% Similarity=-0.034 Sum_probs=88.2
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC-cEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCC
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~-~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~ 148 (685)
.|++.+.| ++.||+.+. +.++.||+... .|+.-.. .....+++..+ ++.++|..+..
T Consensus 39 ~~~~~~~p--dG~ilvs~~-----------~~V~~~d~~G~~~W~~~~~----~~~~~~~~~~~~dG~~lv~~~~~---- 97 (276)
T 3no2_A 39 CNSVAATK--AGEILFSYS-----------KGAKMITRDGRELWNIAAP----AGCEMQTARILPDGNALVAWCGH---- 97 (276)
T ss_dssp CCEEEECT--TSCEEEECB-----------SEEEEECTTSCEEEEEECC----TTCEEEEEEECTTSCEEEEEEST----
T ss_pred CcCeEECC--CCCEEEeCC-----------CCEEEECCCCCEEEEEcCC----CCccccccEECCCCCEEEEecCC----
Confidence 45666776 677777322 35899999332 4764321 11223444444 45555553310
Q ss_pred CccccccCeEEEEECCCCc-EEEcccCCCCCC--CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC-CceEEe
Q 005655 149 QERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~--Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (685)
...++.||+.... |+.-...+.+.+ .........++.+++.... ...|.+||+.- ..|+.-
T Consensus 98 ------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---------~~~v~~~d~~G~~~w~~~ 162 (276)
T 3no2_A 98 ------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---------TSEVREIAPNGQLLNSVK 162 (276)
T ss_dssp ------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---------TTEEEEECTTSCEEEEEE
T ss_pred ------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC---------CCEEEEECCCCCEEEEEE
Confidence 1357788874432 443211111111 1112223334555544321 24688998872 235543
Q ss_pred ccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC--ceeEEeecCCCCCCCcc--e
Q 005655 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRA--G 299 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~~~~~g~~P~~R~--g 299 (685)
... .+ +++... ++.++|.+.... .+..||+.+ ..|+.-... .+..|. -
T Consensus 163 ~~~------~~---~~~~~~~~g~~~v~~~~~~----------------~v~~~d~~tG~~~w~~~~~~--~~~~~l~~~ 215 (276)
T 3no2_A 163 LSG------TP---FSSAFLDNGDCLVACGDAH----------------CFVQLNLESNRIVRRVNAND--IEGVQLFFV 215 (276)
T ss_dssp CSS------CC---CEEEECTTSCEEEECBTTS----------------EEEEECTTTCCEEEEEEGGG--SBSCCCSEE
T ss_pred CCC------Cc---cceeEcCCCCEEEEeCCCC----------------eEEEEeCcCCcEEEEecCCC--CCCcccccc
Confidence 221 11 223333 677777765433 278999884 367765321 121222 2
Q ss_pred eEEEEE-CCeEEEec
Q 005655 300 FSMCVH-KKRALLFG 313 (685)
Q Consensus 300 ~s~~~~-~~~iyvfG 313 (685)
.++++. ++.+||..
T Consensus 216 ~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 216 AQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred ccceEcCCCCEEEEe
Confidence 334444 78888776
No 214
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=90.36 E-value=6.1 Score=38.99 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=52.2
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~ 152 (685)
++...| ++.+++.|+. + ..+.+||+.+++-....... .. ...+....+.+++.|+..
T Consensus 72 ~v~~~~--~~~~l~sgs~--D-------g~v~iw~~~~~~~~~~~~~h--~~--~~~~~~~~~~~l~s~~~~-------- 128 (318)
T 4ggc_A 72 SVAWIK--EGNYLAVGTS--S-------AEVQLWDVQQQKRLRNMTSH--SA--RVGSLSWNSYILSSGSRS-------- 128 (318)
T ss_dssp EEEECT--TSSEEEEEET--T-------SEEEEEETTTTEEEEEEECC--SS--CEEEEEEETTEEEEEETT--------
T ss_pred EEEECC--CCCEEEEEEC--C-------CcEEEeecCCceeEEEecCc--cc--eEEEeecCCCEEEEEecC--------
Confidence 344454 5667777762 2 25778888887644322211 11 122333345555555532
Q ss_pred cccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 153 HHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 153 ~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
..+..++..+.........+ .............+.+++.|+.+ ..+.+||+.+.
T Consensus 129 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~ 182 (318)
T 4ggc_A 129 ---GHIHHHDVRVAEHHVATLSG-HSQEVCGLRWAPDGRHLASGGND---------NLVNVWPSAPG 182 (318)
T ss_dssp ---SEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEETT---------SCEEEEESSCB
T ss_pred ---CceEeeecCCCceeEEEEcC-ccCceEEEEEcCCCCEEEEEecC---------cceeEEECCCC
Confidence 33555555554333222111 11111111122245566666643 35778888754
No 215
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=90.07 E-value=17 Score=36.57 Aligned_cols=112 Identities=10% Similarity=-0.060 Sum_probs=58.2
Q ss_pred ccEEEEEcCCCcEEEecCCCCC----------------CCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEE
Q 005655 101 GDLYRYDVEKQEWKVISSPNSP----------------PPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLD 162 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P----------------~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD 162 (685)
+.+++|++.+..+..+...... ....-+++++. ++.|||.... +.+++||
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------------~~i~~~d 107 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------------YHLSVVG 107 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------------TEEEEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------------CCEEEEe
Confidence 4688999988877755421100 00113455555 5789987431 3478899
Q ss_pred CCCCcEEEcccCCC-CCCCccceEEEE--CCEEEEEccccCCC-Cc-------eeeeceEEEEEcCCCceEEe
Q 005655 163 LKTNQWEQLNLKGC-PSPRSGHRMVLY--KHKIIVFGGFYDTL-RE-------VRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 163 ~~t~~W~~~~~~g~-P~~Rsgh~~v~~--~~~lyv~GG~~~~~-~~-------~~~~~dv~~yD~~t~~W~~v 224 (685)
+.++..+.+..... .....-+.+++- ++.||+--...... +. ......|++||+.+.....+
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 108 SEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp TTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 88776655532100 001112233333 46888853211000 00 00125699999988766544
No 216
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=90.05 E-value=4.2 Score=41.06 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.1
Q ss_pred CCeEEEecceecccCCccccccccCCcEEEEECC-CCcEEEEEec
Q 005655 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELR 349 (685)
Q Consensus 306 ~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~ 349 (685)
++.+++.||.. ..|.+|++. ...|..+...
T Consensus 273 ~g~~las~~~D--------------~~v~lw~~~~~g~~~~~~~~ 303 (316)
T 3bg1_A 273 TANILAVSGGD--------------NKVTLWKESVDGQWVCISDV 303 (316)
T ss_dssp TTCCEEEEESS--------------SCEEEEEECTTSCEEEEEEC
T ss_pred CCCEEEEEcCC--------------CeEEEEEECCCCcEEEeeec
Confidence 56777777753 247777765 5689887763
No 217
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=90.00 E-value=8.3 Score=43.91 Aligned_cols=126 Identities=10% Similarity=0.114 Sum_probs=69.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~ 150 (685)
..+....| +++.++++... +. ..+.+|.++..+..|+.+.... . .....+..++.||+......
T Consensus 229 ~~~~~~Sp--DG~~l~~~~~~--~~---~~~~l~~~~~~~~~~~~l~~~~---~-~~~~~~~~~g~l~~~s~~~~----- 292 (695)
T 2bkl_A 229 FLQSDLSR--DGKYLFVYILR--GW---SENDVYWKRPGEKDFRLLVKGV---G-AKYEVHAWKDRFYVLTDEGA----- 292 (695)
T ss_dssp EEEEEECT--TSCCEEEEEEE--TT---TEEEEEEECTTCSSCEEEEECS---S-CCEEEEEETTEEEEEECTTC-----
T ss_pred EEEEEECC--CCCEEEEEEeC--CC---CceEEEEEcCCCCceEEeecCC---C-ceEEEEecCCcEEEEECCCC-----
Confidence 34555555 45555554421 10 2357888887777888886532 1 11222334555666544321
Q ss_pred cccccCeEEEEECCCCc---EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEe
Q 005655 151 RFHHYKDFWMLDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~---W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (685)
....++++|+.+.. |+.+.+.. + ...-..++..+++|++.+..++ ...||++++....-..+
T Consensus 293 ---~~~~l~~~d~~~~~~~~~~~l~~~~-~-~~~l~~~~~~~~~lv~~~~~dg-------~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 293 ---PRQRVFEVDPAKPARASWKEIVPED-S-SASLLSVSIVGGHLSLEYLKDA-------TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp ---TTCEEEEEBTTBCSGGGCEEEECCC-S-SCEEEEEEEETTEEEEEEEETT-------EEEEEEEETTCCEEEEC
T ss_pred ---CCCEEEEEeCCCCCccCCeEEecCC-C-CCeEEEEEEECCEEEEEEEECC-------EEEEEEEeCCCCeeEEe
Confidence 12579999997765 88776521 1 1112223344888888766433 45788998765433333
No 218
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.88 E-value=16 Score=37.02 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=56.0
Q ss_pred CEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEE
Q 005655 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (685)
Q Consensus 82 ~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~ 160 (685)
+.+++.|+. + +.+.+||+.+..-..+.... ....-.+++.. ++.+++.|+.. ..+.+
T Consensus 139 ~~~l~s~s~--d-------g~i~~wd~~~~~~~~~~~~~--~~~~i~~~~~~pdg~~lasg~~d-----------g~i~i 196 (343)
T 3lrv_A 139 TEYFIWADN--R-------GTIGFQSYEDDSQYIVHSAK--SDVEYSSGVLHKDSLLLALYSPD-----------GILDV 196 (343)
T ss_dssp CCEEEEEET--T-------CCEEEEESSSSCEEEEECCC--SSCCCCEEEECTTSCEEEEECTT-----------SCEEE
T ss_pred CCEEEEEeC--C-------CcEEEEECCCCcEEEEEecC--CCCceEEEEECCCCCEEEEEcCC-----------CEEEE
Confidence 456666662 2 36889999888765443222 11112233333 46777777753 35889
Q ss_pred EECCCCcEE--EcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 161 LDLKTNQWE--QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 161 yD~~t~~W~--~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
||+.+..-. .+.. .. ...-..+.+ ++.+++.|+ . +.|.+||+.+..
T Consensus 197 wd~~~~~~~~~~~~~--~h--~~~v~~l~fs~~g~~l~s~~-~---------~~v~iwd~~~~~ 246 (343)
T 3lrv_A 197 YNLSSPDQASSRFPV--DE--EAKIKEVKFADNGYWMVVEC-D---------QTVVCFDLRKDV 246 (343)
T ss_dssp EESSCTTSCCEECCC--CT--TSCEEEEEECTTSSEEEEEE-S---------SBEEEEETTSST
T ss_pred EECCCCCCCccEEec--cC--CCCEEEEEEeCCCCEEEEEe-C---------CeEEEEEcCCCC
Confidence 999877533 2211 01 111122333 456666666 2 268889987653
No 219
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=89.58 E-value=13 Score=37.24 Aligned_cols=194 Identities=12% Similarity=0.101 Sum_probs=97.1
Q ss_pred eeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCC
Q 005655 99 VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (685)
Q Consensus 99 ~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (685)
....+|++|+.++.-+.+. ..+..+.. ++..++|....... ....+|++|+.++....+.. .+
T Consensus 41 ~~~~l~~~d~~~~~~~~l~--------~~~~~~~SpDg~~la~~~~~~~~------~~~~l~~~~~~~g~~~~l~~--~~ 104 (347)
T 2gop_A 41 YENTIVIENLKNNARRFIE--------NATMPRISPDGKKIAFMRANEEK------KVSEIWVADLETLSSKKILE--AK 104 (347)
T ss_dssp EEEEEEEEETTTCCEEEEE--------SCEEEEECTTSSEEEEEEEETTT------TEEEEEEEETTTTEEEEEEE--ES
T ss_pred ccceEEEEeCCCCceEEcc--------cCCCeEECCCCCEEEEEEeccCC------CcceEEEEECCCCceEEEEc--CC
Confidence 4568999999988776661 11222222 34444443322110 12469999999988777655 22
Q ss_pred CCCccceEEEE--CCEEEEEccccCC----------------CCc--eeeeceEEEEEcCCCce-EEeccCCCCCCCCCc
Q 005655 178 SPRSGHRMVLY--KHKIIVFGGFYDT----------------LRE--VRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSPR 236 (685)
Q Consensus 178 ~~Rsgh~~v~~--~~~lyv~GG~~~~----------------~~~--~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~R 236 (685)
. ...+.| ++..++|+..... +.. ......|+++|+.+... ..+.. +
T Consensus 105 ~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~------~--- 171 (347)
T 2gop_A 105 N----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK------P--- 171 (347)
T ss_dssp E----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE------E---
T ss_pred C----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC------C---
Confidence 2 333444 4544444432100 000 00136799999998876 55543 1
Q ss_pred cceeEEEeCCEEEEEecccCCCCcccCCCCCCce-eeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecce
Q 005655 237 SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII-HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (685)
Q Consensus 237 s~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~-~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (685)
....++...+.|++.+..... ..... ...+|.+| +..+..+... .......-+++.++|++.
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~--------~~~~~~~~~l~~~d--~~~~~~l~~~-------~~~~~~spdg~~l~~~~~ 234 (347)
T 2gop_A 172 RFSSGIWHRDKIVVNVPHREI--------IPQYFKFWDIYIWE--DGKEEKMFEK-------VSFYAVDSDGERILLYGK 234 (347)
T ss_dssp TTCEEEEETTEEEEEEECCCS--------SCCSSCCEEEEEEE--TTEEEEEEEE-------ESEEEEEECSSCEEEEEC
T ss_pred CcccccCCCCeEEEEEecccc--------cccccccccEEEeC--CCceEEeccC-------cceeeECCCCCEEEEEEc
Confidence 222333444445555533221 00002 45789999 6677766531 112222346665555543
Q ss_pred ecccCCccccccccCCcEEEEECCCCcEEEE
Q 005655 316 VDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (685)
Q Consensus 316 ~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (685)
.... .......||.+| +..+..+
T Consensus 235 ~~~~------~~~~~~~l~~~d--~~~~~~l 257 (347)
T 2gop_A 235 PEKK------YMSEHNKLYIYD--GKEVMGI 257 (347)
T ss_dssp CSSS------CCCSSCEEEEEC--SSCEEES
T ss_pred cccC------CccccceEEEEC--CCceEec
Confidence 2210 011245789988 5555544
No 220
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.55 E-value=4.6 Score=41.48 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=60.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
..||.+++....+..+.... + .......+.. ++..+++.+..... ....++++|+.++....+.. .+.
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~------~~~~l~~~d~~~g~~~~l~~--~~~- 284 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEHA-E-GESCTHEFWIPDGSAMAYVSYFKGQ------TDRVIYKANPETLENEEVMV--MPP- 284 (396)
T ss_dssp CCCEEEETTSCCCEESSCCC-T-TEEEEEEEECTTSSCEEEEEEETTT------CCEEEEEECTTTCCEEEEEE--CCS-
T ss_pred ceEEEEECCCCceeEeeccC-C-CccccceEECCCCCEEEEEecCCCC------ccceEEEEECCCCCeEEeee--CCC-
Confidence 57999999888887775421 1 1111222222 34433333322110 11349999999988777654 231
Q ss_pred CccceEEEE-CCEEEEEccccCC--C-----CceeeeceEEEEEcCCCceEEeccC
Q 005655 180 RSGHRMVLY-KHKIIVFGGFYDT--L-----REVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 180 Rsgh~~v~~-~~~lyv~GG~~~~--~-----~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
.. ....- ++.++++++.... . ........|+++|+.+.....+...
T Consensus 285 -~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (396)
T 3c5m_A 285 -CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKH 338 (396)
T ss_dssp -EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred -CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCC
Confidence 12 22222 6666666542100 0 0001136799999998887766544
No 221
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=89.53 E-value=19 Score=36.25 Aligned_cols=216 Identities=7% Similarity=-0.092 Sum_probs=105.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCC-CCcceeEEEEE--CCEEEEEcCccCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP-PPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P-~~R~~ha~v~~--~~~iyvfGG~~~s~~ 148 (685)
+++++.+. ++.|||.... +.+++||+.++..+.+...... ....-+.+++. ++.|||.-.......
T Consensus 83 ~gi~~~~~-~g~l~v~d~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~ 151 (322)
T 2fp8_A 83 YDISYNLQ-NNQLYIVDCY----------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 151 (322)
T ss_dssp EEEEEETT-TTEEEEEETT----------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCT
T ss_pred ceEEEcCC-CCcEEEEECC----------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccc
Confidence 44555532 3678886331 2378889887766555332100 11122334443 468888642210000
Q ss_pred Ccc------ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-C-CEEEEEccccCCCCceeeeceEEEEEcCCC-
Q 005655 149 QER------FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQF- 219 (685)
Q Consensus 149 ~~~------~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~- 219 (685)
... ......+++||+.+.....+... +. .-+.+++- + +.||+.-.. .+.|++|++...
T Consensus 152 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~---~p~gia~~~dg~~lyv~d~~---------~~~I~~~~~~~~~ 218 (322)
T 2fp8_A 152 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LH---VPGGAEVSADSSFVLVAEFL---------SHQIVKYWLEGPK 218 (322)
T ss_dssp TCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ES---CCCEEEECTTSSEEEEEEGG---------GTEEEEEESSSTT
T ss_pred cccceehcccCCCceEEEEeCCCCEEEEeccC-Cc---cCcceEECCCCCEEEEEeCC---------CCeEEEEECCCCc
Confidence 000 00125699999988876654321 11 11233333 2 358876321 357899998752
Q ss_pred --ceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCC
Q 005655 220 --KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296 (685)
Q Consensus 220 --~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~ 296 (685)
.+..+... +. -..+++. ++.|||......... ........+++||+....-..+....-.+ .
T Consensus 219 ~~~~~~~~~~-----~g---P~gi~~d~~G~l~va~~~~~~~~------~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~ 283 (322)
T 2fp8_A 219 KGTAEVLVKI-----PN---PGNIKRNADGHFWVSSSEELDGN------MHGRVDPKGIKFDEFGNILEVIPLPPPFA-G 283 (322)
T ss_dssp TTCEEEEEEC-----SS---EEEEEECTTSCEEEEEEEETTSS------TTSCEEEEEEEECTTSCEEEEEECCTTTT-T
T ss_pred CCccceEEeC-----CC---CCCeEECCCCCEEEEecCccccc------ccCCCccEEEEECCCCCEEEEEECCCCCc-c
Confidence 33333322 21 1223333 567888754321100 00112456889999765555554321111 1
Q ss_pred cceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCC
Q 005655 297 RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (685)
Q Consensus 297 R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (685)
....+++..+++|||.+.. .+.|.+|++..
T Consensus 284 ~~~~~~~~~~g~L~v~~~~--------------~~~i~~~~~~~ 313 (322)
T 2fp8_A 284 EHFEQIQEHDGLLYIGTLF--------------HGSVGILVYDK 313 (322)
T ss_dssp SCCCEEEEETTEEEEECSS--------------CSEEEEEEC--
T ss_pred ccceEEEEeCCEEEEeecC--------------CCceEEEeccc
Confidence 2223445568888887533 24578887653
No 222
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=89.39 E-value=16 Score=38.02 Aligned_cols=71 Identities=13% Similarity=0.308 Sum_probs=37.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCC--cEEEecCCCCCCCcce----eEEEEE--CC-EEEEEcCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSA----HQAVSW--KN-YLYIFGGE 143 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P~~R~~----ha~v~~--~~-~iyvfGG~ 143 (685)
++...| ++.+++.| . + ..+.+||+.+. .+..+... |..... ..++.+ ++ .+++.|+.
T Consensus 182 ~~~~~~--~~~~l~s~-~--d-------~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 182 SISINS--DYETYLSA-D--D-------LRINLWHLEITDRSFNIVDIK--PANMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp EEEECT--TSSEEEEE-C--S-------SEEEEEETTEEEEEEEEEECC--CSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred EEEEcC--CCCEEEEe-C--C-------CeEEEEECCCCCceeeeeecc--cccccccCcceEEEEECCCCCcEEEEEeC
Confidence 455565 45666665 2 3 25788888732 23322111 111111 222333 24 67777775
Q ss_pred cCCCCCccccccCeEEEEECCCCcE
Q 005655 144 FTSPNQERFHHYKDFWMLDLKTNQW 168 (685)
Q Consensus 144 ~~s~~~~~~~~~~dv~~yD~~t~~W 168 (685)
. ..+.+||+.+...
T Consensus 248 d-----------g~i~iwd~~~~~~ 261 (447)
T 3dw8_B 248 K-----------GTIRLCDMRASAL 261 (447)
T ss_dssp T-----------SCEEEEETTTCSS
T ss_pred C-----------CeEEEEECcCCcc
Confidence 3 3578899887763
No 223
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=89.37 E-value=2.3 Score=42.80 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=40.7
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-C-CEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~-~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++.+|+.++. -+.++++|+.+++....-. .+....-+.+++. + +++|+.+.. ...|
T Consensus 10 ~~~~~v~~~~-----------~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~~~v~~~~---------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY-----------PNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNH---------YGDI 67 (349)
T ss_dssp TCEEEEEEET-----------TTEEEEEETTTTEEEEEEE--CSSCCSSCEEEECTTSSEEEEEETT---------TTEE
T ss_pred CCEEEEEeCC-----------CCeEEEEECCCCcEEEEEe--cCCCCCCceeEECCCCCEEEEEeCC---------CCcE
Confidence 5678887764 2569999999887654322 1211112333333 3 357776542 2579
Q ss_pred EEEEcCCCceEE
Q 005655 212 YVFDLDQFKWQE 223 (685)
Q Consensus 212 ~~yD~~t~~W~~ 223 (685)
++||+.+.+...
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999998876543
No 224
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=89.35 E-value=12 Score=38.80 Aligned_cols=131 Identities=8% Similarity=-0.038 Sum_probs=64.0
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEE--ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~--~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+.+++..++......... ........+. -++..++.++..... ...++.++.....+...........
T Consensus 198 ~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~fspdg~~l~~~s~d~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~ 268 (365)
T 4h5i_A 198 SLEVISTVTGSCIARKTDF--DKNWSLSKINFIADDTVLIAASLKKGK-------GIVLTKISIKSGNTSVLRSKQVTNR 268 (365)
T ss_dssp CEEEEETTTCCEEEEECCC--CTTEEEEEEEEEETTEEEEEEEESSSC-------CEEEEEEEEETTEEEEEEEEEEESS
T ss_pred eEEEEEeccCcceeeeecC--CCCCCEEEEEEcCCCCEEEEEecCCcc-------eeEEeecccccceecceeeeeecCC
Confidence 4556666665544322211 1111122222 267777777654431 1246777776666544322111111
Q ss_pred CccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccc--eeEEEe-CCEEEEEecc
Q 005655 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG--FQFFVY-QDEVFLYGGY 254 (685)
Q Consensus 180 Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~--~s~~~~-~~~Iyv~GG~ 254 (685)
...-.++.+ ++.+++.|+.+ ..|.+||+.+.+-.. .. ..+..+ .+++.. ++.+++.|+.
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D---------~~V~iwd~~~~~~~~--~~-----~~gH~~~V~~v~fSpdg~~laS~S~ 332 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASND---------NSIALVKLKDLSMSK--IF-----KQAHSFAITEVTISPDSTYVASVSA 332 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETT---------SCEEEEETTTTEEEE--EE-----TTSSSSCEEEEEECTTSCEEEEEET
T ss_pred CCCeEeEEECCCCCceEEEcCC---------CEEEEEECCCCcEEE--Ee-----cCcccCCEEEEEECCCCCEEEEEeC
Confidence 111223333 67788888853 468899998765322 11 111111 122222 7778888887
Q ss_pred cCC
Q 005655 255 SKE 257 (685)
Q Consensus 255 ~~~ 257 (685)
++.
T Consensus 333 D~t 335 (365)
T 4h5i_A 333 ANT 335 (365)
T ss_dssp TSE
T ss_pred CCe
Confidence 655
No 225
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=89.06 E-value=4 Score=43.30 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=55.3
Q ss_pred eEEEEeccCCCE-EEEEcCeecCCCceeeeccEEEEEcCCC---cEEEecCCC-CCCCcceeEEEEE--CCEEEEEcCcc
Q 005655 72 CSLNINPLKETE-LILYGGEFYNGNKTYVYGDLYRYDVEKQ---EWKVISSPN-SPPPRSAHQAVSW--KNYLYIFGGEF 144 (685)
Q Consensus 72 ~s~~~~p~~~~~-L~vfGG~~~~g~~~~~~ndv~~yd~~~~---~W~~l~s~~-~P~~R~~ha~v~~--~~~iyvfGG~~ 144 (685)
.++...| .+. +++.|+. + +.+.+|++.+. .+....... ......-++++.. ++.+++.|+..
T Consensus 185 ~~l~~~~--~~~~~l~s~~~--d-------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d 253 (430)
T 2xyi_A 185 YGLSWNP--NLNGYLLSASD--D-------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253 (430)
T ss_dssp CCEEECT--TSTTEEEEECT--T-------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred EEEEeCC--CCCCeEEEEeC--C-------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC
Confidence 4455555 233 6666662 2 35788898772 121110000 0111222333333 35677776642
Q ss_pred CCCCCccccccCeEEEEECCCCc-EEEcccCCCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 145 TSPNQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 145 ~s~~~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
..+.+||+.+.. ...+.. .........++.+ +.++++.|+.. ..|.+||+.+
T Consensus 254 -----------g~i~i~d~~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~~l~tg~~d---------g~v~vwd~~~ 309 (430)
T 2xyi_A 254 -----------QKLMIWDTRNNNTSKPSHT--VDAHTAEVNCLSFNPYSEFILATGSAD---------KTVALWDLRN 309 (430)
T ss_dssp -----------SEEEEEETTCSCSSSCSEE--EECCSSCEEEEEECSSCTTEEEEEETT---------SEEEEEETTC
T ss_pred -----------CeEEEEECCCCCCCcceeE--eecCCCCeEEEEeCCCCCCEEEEEeCC---------CeEEEEeCCC
Confidence 458899988652 111100 0011122233344 33588888853 4588899876
No 226
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=89.00 E-value=16 Score=40.73 Aligned_cols=194 Identities=14% Similarity=0.127 Sum_probs=98.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCe
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~d 157 (685)
++.+||.... .+.|.++|+.+++-. .++.. ..-|.+++. +..+|+.+. -+.
T Consensus 166 ~~~~~V~~~~---------~~~V~viD~~t~~v~~~i~~g-----~~p~~v~~SpDGr~lyv~~~------------dg~ 219 (567)
T 1qks_A 166 ENLFSVTLRD---------AGQIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVIGR------------DGK 219 (567)
T ss_dssp GGEEEEEETT---------TTEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEET------------TSE
T ss_pred CceEEEEeCC---------CCeEEEEECCCCeEEEEEeCC-----CCccceEECCCCCEEEEEcC------------CCe
Confidence 4677776651 257999999988654 44332 233544444 457887642 146
Q ss_pred EEEEECC--CCcE-EEcccCCCCCCCccceEEEE-----CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCC
Q 005655 158 FWMLDLK--TNQW-EQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (685)
Q Consensus 158 v~~yD~~--t~~W-~~~~~~g~P~~Rsgh~~v~~-----~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (685)
+.+||+. +.+- ..+.. +..-..+++. ++ ++|+..- ..+.+.+||..+.+=...-+..
T Consensus 220 V~viD~~~~t~~~v~~i~~-----G~~P~~ia~s~~~~pDGk~l~v~n~---------~~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 220 VNMIDLWMKEPTTVAEIKI-----GSEARSIETSKMEGWEDKYAIAGAY---------WPPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp EEEEETTSSSCCEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEE---------ETTEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCCCcEeEEEec-----CCCCceeEEccccCCCCCEEEEEEc---------cCCeEEEEECCCCcEEEEEecc
Confidence 9999995 4432 22222 2211233333 34 6666532 2367888998775533321110
Q ss_pred C---C---CCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEE
Q 005655 229 G---S---MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (685)
Q Consensus 229 ~---~---~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~ 302 (685)
. . -.|.+|.....+...+..+++--. ....+++.|........+... +..+.-|.+
T Consensus 286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~---------------~~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~ 347 (567)
T 1qks_A 286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVK---------------ETGKILLVDYTDLNNLKTTEI---SAERFLHDG 347 (567)
T ss_dssp EECTTTCCEESCCCEEEEEECSSSSEEEEEET---------------TTTEEEEEETTCSSEEEEEEE---ECCSSEEEE
T ss_pred ccccccccccCCCceEEEEEcCCCCEEEEEec---------------CCCeEEEEecCCCccceeeee---eccccccCc
Confidence 0 0 013344443333333333333111 113477888776554444332 334555555
Q ss_pred EEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 303 CVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 303 ~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
.+- +++.+++.... .|.|.++|+.+++=..
T Consensus 348 ~~~pdgr~~~va~~~-------------sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 348 GLDGSHRYFITAANA-------------RNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EECTTSCEEEEEEGG-------------GTEEEEEETTTTEEEE
T ss_pred eECCCCCEEEEEeCC-------------CCeEEEEECCCCcEEE
Confidence 544 34433333221 4679999999886443
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=88.96 E-value=16 Score=41.50 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=82.6
Q ss_pred ccEEEEEcCCC--cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCC---cEEEcccCC
Q 005655 101 GDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKG 175 (685)
Q Consensus 101 ndv~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~---~W~~~~~~g 175 (685)
+++|++|..+. .|..+.... ......+...++.||+....... ...++.+|+.+. .|+.+.+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~---~~~~~~~~~~g~~l~~~t~~~~~--------~~~l~~~d~~~~~~~~~~~l~~~- 326 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDL---DADVSLVDNKGSTLYLLTNRDAP--------NRRLVTVDAANPGPAHWRDLIPE- 326 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSS---SSCEEEEEEETTEEEEEECTTCT--------TCEEEEEETTSCCGGGCEEEECC-
T ss_pred cEEEEEECCCCCCceEEEeCCC---CceEEEEeccCCEEEEEECCCCC--------CCEEEEEeCCCCCccccEEEecC-
Confidence 58999998776 788876532 11112233447889988764321 257999999874 48877652
Q ss_pred CCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEE--eCCEEEEE-e
Q 005655 176 CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLY-G 252 (685)
Q Consensus 176 ~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~--~~~~Iyv~-G 252 (685)
... .- .....+++|++..-..+ ...|+++|+.......+... ...+...+.. .++.|++. .
T Consensus 327 -~~~-~~-~~s~~g~~lv~~~~~~g-------~~~l~~~d~~g~~~~~l~~p------~~~~~~~~~~~~d~~~l~~~~s 390 (693)
T 3iuj_A 327 -RQQ-VL-TVHSGSGYLFAEYMVDA-------TARVEQFDYEGKRVREVALP------GLGSVSGFNGKHDDPALYFGFE 390 (693)
T ss_dssp -CSS-CE-EEEEETTEEEEEEEETT-------EEEEEEECTTSCEEEEECCS------SSSEEEECCCCTTCSCEEEEEE
T ss_pred -CCC-EE-EEEEECCEEEEEEEECC-------eeEEEEEECCCCeeEEeecC------CCceEEeeecCCCCCEEEEEec
Confidence 111 12 44445677766543221 45789999887665555432 1111111111 12333333 2
Q ss_pred cccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC
Q 005655 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (685)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~ 290 (685)
+.. .-..++.||+.+..++.+...
T Consensus 391 s~~--------------tP~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 391 NYA--------------QPPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp CSS--------------SCCEEEEECTTTCCEEEEECC
T ss_pred CCC--------------CCCEEEEEECCCCeEEEEEeC
Confidence 221 124588899888887777653
No 228
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=88.81 E-value=13 Score=41.86 Aligned_cols=126 Identities=12% Similarity=0.144 Sum_probs=68.0
Q ss_pred eEEEEECCEEEEEcCccCCCCCccccccCeEEEEEC-CCCc--EEEcccCCC---CCCC---ccceEEE--ECCE----E
Q 005655 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTNQ--WEQLNLKGC---PSPR---SGHRMVL--YKHK----I 192 (685)
Q Consensus 128 ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~-~t~~--W~~~~~~g~---P~~R---sgh~~v~--~~~~----l 192 (685)
.+-++.++.||+.+.. .+.++.||. .|++ |+.-..... +..+ ...+.++ .++. |
T Consensus 56 ~tP~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV 124 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALI 124 (599)
T ss_dssp SCCEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEE
T ss_pred eccEEECCEEEEEeCC-----------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEE
Confidence 3445679999998652 146889999 7774 887443110 1011 1223445 5666 7
Q ss_pred EEEccccCCCCceeeeceEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCce
Q 005655 193 IVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII 270 (685)
Q Consensus 193 yv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~ 270 (685)
|+... ...|+++|..+.+ |+.-..... +......+.++.++.||+-.+.... ..
T Consensus 125 ~v~t~----------dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~ssP~v~~g~V~vg~~g~e~-----------g~ 180 (599)
T 1w6s_A 125 LKTQL----------DGNVAALNAETGETVWKVENSDIK---VGSTLTIAPYVVKDKVIIGSSGAEL-----------GV 180 (599)
T ss_dssp EEECT----------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEECCBCGGG-----------TC
T ss_pred EEEcC----------CCEEEEEECCCCCEEEeecCCCCC---ccceeecCCEEECCEEEEEeccccc-----------CC
Confidence 77532 2468999988764 875432100 0001122234457877764321110 12
Q ss_pred eeeEEEEeCCCc--eeEEee
Q 005655 271 HSDLWSLDPRTW--EWSKVK 288 (685)
Q Consensus 271 ~~dv~~yd~~t~--~W~~~~ 288 (685)
...++.||+.+. .|+.-.
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp CCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEECCCCcEEEEEcC
Confidence 245889998764 587654
No 229
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=88.66 E-value=19 Score=35.24 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
+.|+++|+.+++...+-.... ....-.+++.. ++.+++.|+.+ ..+.+||+.+++-..... ....
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~-~~~~V~~v~~~~~~~~l~sgs~D-----------g~v~iw~~~~~~~~~~~~--~h~~ 110 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMT--SHSA 110 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTTEEEEEEE--CCSS
T ss_pred CEEEEEECCCCCEEEEEEecC-CCCeEEEEEECCCCCEEEEEECC-----------CcEEEeecCCceeEEEec--Cccc
Confidence 368999999987665432211 11111222222 46777777753 357888998876443322 1222
Q ss_pred CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCC
Q 005655 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (685)
Q Consensus 180 Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~ 257 (685)
...+....+.+++.|+.. ..+..++..+.......... .............+.+++.|+..+.
T Consensus 111 --~~~~~~~~~~~l~s~~~~---------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~ 173 (318)
T 4ggc_A 111 --RVGSLSWNSYILSSGSRS---------GHIHHHDVRVAEHHVATLSG----HSQEVCGLRWAPDGRHLASGGNDNL 173 (318)
T ss_dssp --CEEEEEEETTEEEEEETT---------SEEEEEETTSSSCEEEEEEC----CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred --eEEEeecCCCEEEEEecC---------CceEeeecCCCceeEEEEcC----ccCceEEEEEcCCCCEEEEEecCcc
Confidence 222344455666666643 23455555544333222210 1111111112225666777776654
No 230
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=88.60 E-value=21 Score=35.70 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=27.6
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
.+.+||+.+..-...-. + . ...-..+.+ ++.+++.||.+ ..|.+||+.+.+
T Consensus 177 ~i~~wd~~~~~~~~~~~-~-h--~~~v~~~~~sp~g~~l~s~~~d---------g~i~iwd~~~~~ 229 (319)
T 3frx_A 177 MVKAWNLNQFQIEADFI-G-H--NSNINTLTASPDGTLIASAGKD---------GEIMLWNLAAKK 229 (319)
T ss_dssp CEEEEETTTTEEEEEEC-C-C--CSCEEEEEECTTSSEEEEEETT---------CEEEEEETTTTE
T ss_pred EEEEEECCcchhheeec-C-C--CCcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCc
Confidence 47788887655332111 1 1 111122223 56777777753 368888887764
No 231
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=88.45 E-value=10 Score=39.67 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=18.8
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE 112 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~ 112 (685)
=.++...| ++.+++.||. + ..+.+|++.+..
T Consensus 31 V~~v~~s~--~g~~la~g~~--d-------g~v~iw~~~~~~ 61 (447)
T 3dw8_B 31 ISTVEFNH--SGELLATGDK--G-------GRVVIFQQEQEN 61 (447)
T ss_dssp EEEEEECS--SSSEEEEEET--T-------SEEEEEEECC--
T ss_pred EEEEEECC--CCCEEEEEcC--C-------CeEEEEEecCCC
Confidence 34555565 5778888873 2 357788877654
No 232
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=88.28 E-value=14 Score=39.21 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=13.2
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 005655 70 SNCSLNINPLKETELILYGG 89 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG 89 (685)
..|++++.. ++.||.+|-
T Consensus 130 ~~h~~alt~--~G~v~~wG~ 147 (406)
T 4d9s_A 130 DSHCLAVTM--EGEVQSWGR 147 (406)
T ss_dssp SSEEEEEET--TSCEEEEEC
T ss_pred hhheEEEcC--CCcEEEeCC
Confidence 357777663 689999994
No 233
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=88.18 E-value=11 Score=42.67 Aligned_cols=114 Identities=10% Similarity=-0.030 Sum_probs=59.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.++++|+.+++-..+.....-....-.+.+.- +++.++++........ ......+|++|+.++....+........+
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~~~~~ 115 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQ--HSYTGYYVLSKIPHGDPQSLDPPEVSNAK 115 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSS--SCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCcccee--ecceeeEEEEECCCCceEeccCCcccccc
Confidence 68889998876655543211000011222222 4665566543322111 12347899999999887666542111111
Q ss_pred ccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 181 sgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
..+....-+++.++|+.. +.|+++|+.+.....+...
T Consensus 116 ~~~~~~SPdG~~la~~~~----------~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 116 LQYAGWGPKGQQLIFIFE----------NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CSBCCBCSSTTCEEEEET----------TEEEEESSSSSCCEEEECC
T ss_pred ccccEECCCCCEEEEEEC----------CeEEEEECCCCceEEEecC
Confidence 112222225555555542 3689999888777766543
No 234
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=87.76 E-value=21 Score=34.59 Aligned_cols=104 Identities=13% Similarity=0.312 Sum_probs=54.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc-EE--EecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCcccccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WK--VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHY 155 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~-W~--~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~ 155 (685)
.+++|+|=|. .+|+++..... .. .+...-+-.|..--|+... ++++|+|-|
T Consensus 40 ~g~~~fFkg~-----------~~Wr~~~~~~~~~~P~~I~~~wp~lp~~IDAA~~~~~~~k~yfFkG------------- 95 (218)
T 1gen_A 40 RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAG------------- 95 (218)
T ss_dssp TTEEEEEETT-----------EEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEET-------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCCccCCCEEHHHhcCCCCCCccEEEEECCCCEEEEEeC-------------
Confidence 5889988873 35555544321 11 2221110112222233333 589999977
Q ss_pred CeEEEEECCCCc--E-EEcccCCCCCCC-ccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 156 KDFWMLDLKTNQ--W-EQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 156 ~dv~~yD~~t~~--W-~~~~~~g~P~~R-sgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
+.+|+|+..+.. + ..|...+.|..- .-.+++.+ ++++|+|-| +..|+||..+.
T Consensus 96 ~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-----------~~ywr~d~~~~ 154 (218)
T 1gen_A 96 NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-----------DKFWRYNEVKK 154 (218)
T ss_dssp TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-----------TEEEEEETTTT
T ss_pred CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-----------CEEEEEECccc
Confidence 568999853110 0 122222334321 22344443 689999977 46899998765
No 235
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=87.69 E-value=5.9 Score=37.86 Aligned_cols=151 Identities=14% Similarity=0.290 Sum_probs=77.2
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCC--c-EEEccc--CCCCCCCccceEEEECCEEEEEccccCCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--Q-WEQLNL--KGCPSPRSGHRMVLYKHKIIVFGGFYDTLR 203 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~-W~~~~~--~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~ 203 (685)
+++.+.+.+|+|-| +.+|+++.... . =..|.. .++|. ....+....++++|+|-|
T Consensus 10 A~~~~~g~~~fFkg-------------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg------ 69 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG------ 69 (196)
T ss_dssp EEEEETTEEEEEET-------------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET------
T ss_pred EEEEcCCEEEEEEC-------------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC------
Confidence 44566899999987 46888864310 0 012221 13453 222222223688999977
Q ss_pred ceeeeceEEEEEcCCCce---EEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeC
Q 005655 204 EVRYYNDLYVFDLDQFKW---QEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (685)
Q Consensus 204 ~~~~~~dv~~yD~~t~~W---~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (685)
+.+|+|+..+... ..|...- ..+|......++... ++++|+|=|. ..|+||.
T Consensus 70 -----~~yw~~~~~~~~~gyPk~I~~~~-~glP~~~IDAA~~~~~~g~~yfFkG~------------------~yw~yd~ 125 (196)
T 3c7x_A 70 -----DKHWVFDEASLEPGYPKHIKELG-RGLPTDKIDAALFWMPNGKTYFFRGN------------------KYYRFNE 125 (196)
T ss_dssp -----TEEEEEETTEECTTCSEEGGGTC-BSCCSSCCSEEEEETTTTEEEEEETT------------------EEEEEET
T ss_pred -----CEEEEEeCCcccCCCCeEhhhcC-CCCCCCcccEEEEEccCCEEEEEECC------------------EEEEEeC
Confidence 4568887542110 1111110 012322233333222 6899999664 2788987
Q ss_pred CCceeEE-----eec-CCCCCCCcceeEEEEE-CC-eEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 280 RTWEWSK-----VKK-IGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 280 ~t~~W~~-----~~~-~g~~P~~R~g~s~~~~-~~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.+.+-.. +.. +|. | ..-.++... ++ ++|+|=|. ..|.||..+.+
T Consensus 126 ~~~~v~~gyPk~i~~~~gi-p--~~idaAf~~~~~~~~YfFkg~----------------~y~r~d~~~~~ 177 (196)
T 3c7x_A 126 ELRAVDSEYPKNIKVWEGI-P--ESPRGSFMGSDEVFTYFYKGN----------------KYWKFNNQKLK 177 (196)
T ss_dssp TTTEECTTCSEEGGGSBTC-C--SSCSEEEECTTSSEEEEEETT----------------EEEEEETTTTE
T ss_pred CcccccCCCCccHHHCCCc-C--CCcceeEEecCCCEEEEEECC----------------EEEEEECCcce
Confidence 6643211 111 121 2 112233333 44 89999764 37899987754
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=87.58 E-value=0.27 Score=51.96 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=25.0
Q ss_pred cEEEEEcCCC--cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCC--cEEE
Q 005655 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQ 170 (685)
Q Consensus 102 dv~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~W~~ 170 (685)
.|+++|..++ .|+.-. . +. . .+.++.++.+|+.|+.. ..++.||..++ .|..
T Consensus 20 ~v~a~d~~tG~~~W~~~~-~--~~-~--s~p~~~~g~~~v~~s~d-----------g~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 20 SLHAVSKRTGSIKWTLKE-D--PV-L--QVPTHVEEPAFLPDPND-----------GSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp EEEEEETTTCCEEEEEEC-C--CS-C--CCC-----CCEEECTTT-----------CCEEEC-----CCSEEC
T ss_pred EEEEEECCCCCEEEEecC-C--Cc-e--ecceEcCCCEEEEeCCC-----------CEEEEEECCCCceeeee
Confidence 6899998877 477543 1 11 1 12233456677776432 35888998765 4653
No 237
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=87.49 E-value=8.1 Score=43.71 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=47.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCcc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~ 151 (685)
.++.+.| +++.++++..............++++|+.+.+.+.+........+..+....-+++.++|+..
T Consensus 64 ~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------- 133 (723)
T 1xfd_A 64 IRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------- 133 (723)
T ss_dssp SEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--------
T ss_pred ceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--------
Confidence 4566676 667666665311111112346899999998877666543211111111111224544455432
Q ss_pred ccccCeEEEEECCCCcEEEccc
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
+.+|++|+.++....+..
T Consensus 134 ----~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 134 ----NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp ----TEEEEESSSSSCCEEEEC
T ss_pred ----CeEEEEECCCCceEEEec
Confidence 368889988887766654
No 238
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=87.07 E-value=22 Score=42.09 Aligned_cols=110 Identities=11% Similarity=0.110 Sum_probs=58.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCcc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~ 151 (685)
.++++.| ++.+++.|+. + ..+++|+..+..-..... ....-.+++...+.+++.|+..
T Consensus 21 ~~lafsp--dg~~lAsgs~--D-------g~I~lw~~~~~~~~~~~~----~~~~V~~l~fspg~~L~S~s~D------- 78 (902)
T 2oaj_A 21 IAAAFDF--TQNLLAIATV--T-------GEVHIYGQQQVEVVIKLE----DRSAIKEMRFVKGIYLVVINAK------- 78 (902)
T ss_dssp EEEEEET--TTTEEEEEET--T-------SEEEEECSTTCEEEEECS----SCCCEEEEEEETTTEEEEEETT-------
T ss_pred EEEEECC--CCCEEEEEeC--C-------CEEEEEeCCCcEEEEEcC----CCCCEEEEEEcCCCEEEEEECc-------
Confidence 4566676 5778888873 2 357788877655432211 1111223333345555555532
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
+.+.++|+.+......-. .+ . .-.++.+ ++..++.|+.+ ..|.+||+.+..-
T Consensus 79 ----~~v~lWd~~~~~~~~~~~--~~-~--~V~~v~~sp~g~~l~sgs~d---------g~V~lwd~~~~~~ 132 (902)
T 2oaj_A 79 ----DTVYVLSLYSQKVLTTVF--VP-G--KITSIDTDASLDWMLIGLQN---------GSMIVYDIDRDQL 132 (902)
T ss_dssp ----CEEEEEETTTCSEEEEEE--CS-S--CEEEEECCTTCSEEEEEETT---------SCEEEEETTTTEE
T ss_pred ----CeEEEEECCCCcEEEEEc--CC-C--CEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcc
Confidence 458888988775432211 11 1 1122333 45555666542 4678889887654
No 239
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=86.70 E-value=13 Score=37.12 Aligned_cols=106 Identities=12% Similarity=0.096 Sum_probs=57.6
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
+.+++.|+.. ..+.+||+.+........ .......-..+.+ ++.+++.|+.+ ..|.
T Consensus 54 g~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d---------g~v~ 111 (368)
T 3mmy_A 54 GNFLIAGSWA-----------NDVRCWEVQDSGQTIPKA--QQMHTGPVLDVCWSDDGSKVFTASCD---------KTAK 111 (368)
T ss_dssp SEEEEEEETT-----------SEEEEEEECTTSCEEEEE--EEECSSCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred ceEEEEECCC-----------CcEEEEEcCCCCceeEEE--eccccCCEEEEEECcCCCEEEEEcCC---------CcEE
Confidence 3788887753 347788887633322111 1111111222333 55566666642 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
+||+.+.....+... ..+.....+... ++.+++.|+.++. +.+||+.+..
T Consensus 112 iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~ 162 (368)
T 3mmy_A 112 MWDLSSNQAIQIAQH-----DAPVKTIHWIKAPNYSCVMTGSWDKT----------------LKFWDTRSSN 162 (368)
T ss_dssp EEETTTTEEEEEEEC-----SSCEEEEEEEECSSCEEEEEEETTSE----------------EEEECSSCSS
T ss_pred EEEcCCCCceeeccc-----cCceEEEEEEeCCCCCEEEEccCCCc----------------EEEEECCCCc
Confidence 999988876654332 222222222213 6678888887654 7788876653
No 240
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=86.55 E-value=33 Score=35.64 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=38.6
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.+++.|+. + +.+.+||+.+.+-...-.. +.....-.++.+ ++.+++.|+.. ..+
T Consensus 181 ~~~~l~~~~~--d-------~~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~d-----------g~i 238 (437)
T 3gre_A 181 EKSLLVALTN--L-------SRVIIFDIRTLERLQIIEN--SPRHGAVSSICIDEECCVLILGTTR-----------GII 238 (437)
T ss_dssp SCEEEEEEET--T-------SEEEEEETTTCCEEEEEEC--CGGGCCEEEEEECTTSCEEEEEETT-----------SCE
T ss_pred CCCEEEEEeC--C-------CeEEEEeCCCCeeeEEEcc--CCCCCceEEEEECCCCCEEEEEcCC-----------CeE
Confidence 4667777762 2 3688999988764422111 111112223333 46677777753 348
Q ss_pred EEEECCCCcEEE
Q 005655 159 WMLDLKTNQWEQ 170 (685)
Q Consensus 159 ~~yD~~t~~W~~ 170 (685)
.+||+.+.....
T Consensus 239 ~iwd~~~~~~~~ 250 (437)
T 3gre_A 239 DIWDIRFNVLIR 250 (437)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEEcCCccEEE
Confidence 899998866543
No 241
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=86.54 E-value=29 Score=35.02 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=49.1
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcce-eEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSA-HQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~-ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (685)
.+++||+.+.++..+.......+... ..+++. ++.+|+.. ...... .....+|+|+ +.+...+... . .
T Consensus 110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~-~~~~~~----~~~~~l~~~~--~g~~~~~~~~-~--~ 179 (326)
T 2ghs_A 110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGT-MGRKAE----TGAGSIYHVA--KGKVTKLFAD-I--S 179 (326)
T ss_dssp EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEE-EETTCC----TTCEEEEEEE--TTEEEEEEEE-E--S
T ss_pred CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEe-CCCcCC----CCceEEEEEe--CCcEEEeeCC-C--c
Confidence 48999999998887654321111111 222222 46777643 211100 1235799999 5666654321 0 1
Q ss_pred CccceEEEE-CC-EEEEEccccCCCCceeeeceEEEEEcC
Q 005655 180 RSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLD 217 (685)
Q Consensus 180 Rsgh~~v~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (685)
. ..+++.. ++ .||+.... .+.|++||+.
T Consensus 180 ~-~~~i~~s~dg~~lyv~~~~---------~~~I~~~d~~ 209 (326)
T 2ghs_A 180 I-PNSICFSPDGTTGYFVDTK---------VNRLMRVPLD 209 (326)
T ss_dssp S-EEEEEECTTSCEEEEEETT---------TCEEEEEEBC
T ss_pred c-cCCeEEcCCCCEEEEEECC---------CCEEEEEEcc
Confidence 1 1223332 33 67776432 2578999875
No 242
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=86.22 E-value=14 Score=38.83 Aligned_cols=110 Identities=13% Similarity=0.237 Sum_probs=60.5
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCC--cE-EEcccCCCCCCC-ccceEEEE--CCEEEEEccccCCCCceee
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QW-EQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRY 207 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~--~W-~~~~~~g~P~~R-sgh~~v~~--~~~lyv~GG~~~~~~~~~~ 207 (685)
.+.+|+|-| +.+|+|+.... .+ ..|...|+|..- .--+++.+ ++++|+|-|
T Consensus 236 ~g~~~fFkg-------------~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG---------- 292 (365)
T 3ba0_A 236 RNQVFLFKD-------------DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD---------- 292 (365)
T ss_dssp GTEEEEEET-------------TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET----------
T ss_pred CCEEEEEeC-------------CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC----------
Confidence 689999977 45788865422 11 233332345421 22234444 479999977
Q ss_pred eceEEEEEcCCCceEEeccCC----CCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc
Q 005655 208 YNDLYVFDLDQFKWQEIKPRF----GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (685)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~----~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (685)
+..|+||..+.+-..--+.+ -..+|. ... ++... ++.+|+|=|. ..|+||..+.
T Consensus 293 -~~yw~yd~~~~~v~~gyPk~I~~~f~g~p~-~iD-aA~~~~~g~~YfFkg~------------------~ywr~d~~~~ 351 (365)
T 3ba0_A 293 -NQYWRYDERRQMMDPGYPKLITKNFQGIGP-KID-AVFYSKNKYYYFFQGS------------------NQFEYDFLLQ 351 (365)
T ss_dssp -TEEEEEETTTTEECSSCCCCHHHHSTTCCS-SCS-EEEEETTTEEEEEETT------------------EEEEEETTTT
T ss_pred -CEEEEEeCCcceecCCCCcchhhcCCCCCC-ccc-eeeEecCCcEEEEeCC------------------EEEEEECCcc
Confidence 46799998765311100000 001121 122 23333 8889998663 3889998877
Q ss_pred eeEEe
Q 005655 283 EWSKV 287 (685)
Q Consensus 283 ~W~~~ 287 (685)
+-..+
T Consensus 352 ~v~~~ 356 (365)
T 3ba0_A 352 RITKT 356 (365)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 66553
No 243
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=86.07 E-value=35 Score=35.52 Aligned_cols=74 Identities=8% Similarity=-0.086 Sum_probs=40.1
Q ss_pred CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCe--EEEecceecccCC
Q 005655 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR--ALLFGGVVDMEMK 321 (685)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~--iyvfGG~~~~~~~ 321 (685)
++.+|+....... .......+.++++|+.+.+-...-+ .+...+++++- +++ +|+..+.
T Consensus 278 ~~~lyV~~~~~~~-------~~~~~~~~~V~VID~~t~~vv~~i~-----~g~~p~~i~~s~Dg~~~l~v~~~~------ 339 (373)
T 2mad_H 278 SDGIYLLTSEQSA-------WKLHAAAKEVTSVTGLVGQTSSQIS-----LGHDVDAISVAQDGGPDLYALSAG------ 339 (373)
T ss_pred CCEEEEEeccCCc-------ccccCCCCeEEEEECCCCEEEEEEE-----CCCCcCeEEECCCCCeEEEEEcCC------
Confidence 6788887542111 0001123579999998876533222 22223445544 444 4443322
Q ss_pred ccccccccCCcEEEEECCCCcEE
Q 005655 322 GDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
.++|.+||+.+.+=.
T Consensus 340 --------~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 340 --------TEVLHIYDAGAGDQD 354 (373)
T ss_pred --------CCeEEEEECCCCCEE
Confidence 367999999886544
No 244
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=85.74 E-value=37 Score=35.84 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=12.2
Q ss_pred eeEEEEE-CCEEEEEcC
Q 005655 127 AHQAVSW-KNYLYIFGG 142 (685)
Q Consensus 127 ~ha~v~~-~~~iyvfGG 142 (685)
.|+++.. ++.||.+|-
T Consensus 131 ~h~~alt~~G~v~~wG~ 147 (406)
T 4d9s_A 131 SHCLAVTMEGEVQSWGR 147 (406)
T ss_dssp SEEEEEETTSCEEEEEC
T ss_pred hheEEEcCCCcEEEeCC
Confidence 5666665 689999994
No 245
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=85.64 E-value=29 Score=37.59 Aligned_cols=105 Identities=5% Similarity=-0.069 Sum_probs=52.3
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (685)
++.+++.|+.+ ..+.+||.....-..+... .. .-.+++.. ++.+++.|+.++.
T Consensus 437 d~~~l~~~~~d---------~~v~~w~~~~~~~~~~~~~-----~~--~v~~~~~spd~~~las~~~d~~---------- 490 (577)
T 2ymu_A 437 DDQTIASASDD---------KTVKLWNRNGQLLQTLTGH-----SS--SVRGVAFSPDGQTIASASDDKT---------- 490 (577)
T ss_dssp TSSEEEEEETT---------SEEEEEETTSCEEEEEECC-----SS--CEEEEEECTTSCEEEEEETTSE----------
T ss_pred CCCEEEEEcCC---------CEEEEEECCCCEEEEEcCC-----CC--CEEEEEEcCCCCEEEEEeCCCE----------
Confidence 56666666642 3577788755444333322 11 11223333 6677777776554
Q ss_pred CceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
+.+||.....-..+.. .... -.++++. ++++++.||.. ..|.+||.....-.
T Consensus 491 ------i~iw~~~~~~~~~~~~----h~~~-v~~l~~s~dg~~l~s~~~d--------------g~v~lwd~~~~~~~ 543 (577)
T 2ymu_A 491 ------VKLWNRNGQLLQTLTG----HSSS-VRGVAFSPDGQTIASASDD--------------KTVKLWNRNGQLLQ 543 (577)
T ss_dssp ------EEEEETTSCEEEEEEC----CSSC-EEEEEECTTSSCEEEEETT--------------SEEEEECTTSCEEE
T ss_pred ------EEEEcCCCCEEEEEeC----CCCC-EEEEEEcCCCCEEEEEECc--------------CEEEEEeCCCCEEE
Confidence 5666754433222221 1111 1223333 56777777653 24888886544333
No 246
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=85.48 E-value=31 Score=34.38 Aligned_cols=95 Identities=7% Similarity=0.096 Sum_probs=51.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCc---EEEccc--CC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQLNL--KG 175 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~---W~~~~~--~g 175 (685)
.+++|++.+.+...+... |..+.....+.. ++.+|+.-. ....+|++|+.+.. |..-.. ..
T Consensus 96 ~v~~~d~~~g~~~~~~~~--~~~~~~~g~~~~~~~~~~v~d~-----------~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTL--PDAIFLNGITPLSDTQYLTADS-----------YRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp EEEEEECTTSCEEEEEEC--TTCSCEEEEEESSSSEEEEEET-----------TTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred eEEEEcCCCCeEEEEEeC--CCccccCcccccCCCcEEEEEC-----------CCCeEEEEeCCCCcEeEEEECCccccc
Confidence 378889888887766442 334544555544 466777532 12579999987652 221110 00
Q ss_pred CCCC--CccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 176 CPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 176 ~P~~--Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
.+.. .....+..-++.||+.-- ..+.|++|++..
T Consensus 163 ~~~~~~~~pngis~dg~~lyv~d~---------~~~~I~~~~~~~ 198 (306)
T 2p4o_A 163 NSESVFPAANGLKRFGNFLYVSNT---------EKMLLLRIPVDS 198 (306)
T ss_dssp STTCCSCSEEEEEEETTEEEEEET---------TTTEEEEEEBCT
T ss_pred cccCCCCcCCCcCcCCCEEEEEeC---------CCCEEEEEEeCC
Confidence 1111 112233333567887532 146799999864
No 247
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=84.98 E-value=27 Score=34.82 Aligned_cols=108 Identities=8% Similarity=0.028 Sum_probs=57.9
Q ss_pred CEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCc
Q 005655 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGI 269 (685)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (685)
+.+++.|+.+ ..|.+||+.+..-...-.. . ..+.....+...++.+++.|+.++.
T Consensus 85 ~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~-~---~~~i~~~~~~~~~~~~l~s~~~dg~------------ 139 (366)
T 3k26_A 85 HPLLAVAGSR---------GIIRIINPITMQCIKHYVG-H---GNAINELKFHPRDPNLLLSVSKDHA------------ 139 (366)
T ss_dssp CEEEEEEETT---------CEEEEECTTTCCEEEEEES-C---CSCEEEEEECSSCTTEEEEEETTSC------------
T ss_pred CCEEEEecCC---------CEEEEEEchhceEeeeecC-C---CCcEEEEEECCCCCCEEEEEeCCCe------------
Confidence 5677777753 4688888877653322111 0 1111221121115678888887665
Q ss_pred eeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 270 ~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
+.+||+.+..-...-.. .......-.++++. ++..++.|+.. +.|.+||+.+.
T Consensus 140 ----i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~ 193 (366)
T 3k26_A 140 ----LRLWNIQTDTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMD--------------HSLKLWRINSK 193 (366)
T ss_dssp ----EEEEETTTTEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETT--------------SCEEEEESCSH
T ss_pred ----EEEEEeecCeEEEEecc-cccccCceeEEEECCCCCEEEEecCC--------------CCEEEEECCCC
Confidence 78889887654443210 01112222333443 46667777653 34889998754
No 248
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=84.87 E-value=10 Score=41.14 Aligned_cols=150 Identities=15% Similarity=0.247 Sum_probs=77.0
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEE--ecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYK 156 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~--l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~ 156 (685)
.+++|+|=|. -+|+++.....+.. +...-+-.|..--++... .+.+|+|=| +
T Consensus 272 ~ge~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~Wp~LP~~iDAa~~~~~~g~~~fFKg-------------~ 327 (450)
T 1su3_A 272 RGEVMFFKDR-----------FYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKG-------------N 327 (450)
T ss_dssp TTEEEEEETT-----------EEEECCTTSSSCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEET-------------T
T ss_pred CCeEEEEeCC-----------EEEEEcCCCCcccceehhHhccCCCCCeeEEEEEcCCCeEEEEeC-------------C
Confidence 6899999884 34555554433321 111110112222233333 589999977 4
Q ss_pred eEEEEECCCC--cE-EEcc-cCCCCCCCcc-ceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceE-----Ee
Q 005655 157 DFWMLDLKTN--QW-EQLN-LKGCPSPRSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----EI 224 (685)
Q Consensus 157 dv~~yD~~t~--~W-~~~~-~~g~P~~Rsg-h~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-----~v 224 (685)
.+|+|+..+- .+ ..+. ..+.|..-.+ -+++.+ ++++|+|-| +.+|+||..+.+-. .|
T Consensus 328 ~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-----------~~yw~yd~~~~~~~~gYPk~I 396 (450)
T 1su3_A 328 KYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-----------NKYWRYDEYKRSMDPGYPKMI 396 (450)
T ss_dssp EEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEECSSCSEEH
T ss_pred EEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-----------CEEEEEeCCCccccCCCCcch
Confidence 6888875321 01 1222 1233432112 233344 589999977 46899997654211 11
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE
Q 005655 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (685)
...-.+ +| .... +++..++.+|+|-|. ..|+||..+.+=..
T Consensus 397 ~~~fpg-ip-~~iD-AA~~~~g~~YFFkg~------------------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 397 AHDFPG-IG-HKVD-AVFMKDGFFYFFHGT------------------RQYKFDPKTKRILT 437 (450)
T ss_dssp HHHSTT-SC-SCCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred hhcCCC-CC-CCcc-EEEEcCCeEEEEeCC------------------EEEEEECCcceEec
Confidence 100001 12 1222 233358899999764 37899987766544
No 249
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=84.51 E-value=34 Score=38.20 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=46.5
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCc--EEEcccCCC-CCCC---ccceEEEECCEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC-PSPR---SGHRMVLYKHKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~-P~~R---sgh~~v~~~~~lyv~GG~~~~~ 202 (685)
+-++.++.|||.+.. +.++.||..|++ |+.-..... ..+. ...+.++.++.||+...
T Consensus 63 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~----- 125 (582)
T 1flg_A 63 QAIVSDGVIYVTASY------------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL----- 125 (582)
T ss_dssp CCEEETTEEEEEETT------------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-----
T ss_pred ccEEECCEEEEEcCC------------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-----
Confidence 345679999998652 248899998874 887443111 0011 12334567888887432
Q ss_pred CceeeeceEEEEEcCCCc--eEEe
Q 005655 203 REVRYYNDLYVFDLDQFK--WQEI 224 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W~~v 224 (685)
...|+.+|..|.+ |+.-
T Consensus 126 -----dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 126 -----DASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp -----TTEEEEEESSSCCEEEEEE
T ss_pred -----CCEEEEEECCCCCEEeeec
Confidence 2468999998764 8764
No 250
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=84.39 E-value=37 Score=34.23 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=32.1
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.+++.|+. + ..+.+||+.+.+.. .+... ...-.+++.. ++..++.||.. ..+
T Consensus 87 ~~~~l~s~s~--D-------~~v~lwd~~~~~~~~~~~~h----~~~v~~v~~sp~~~~l~s~~~d-----------~~i 142 (343)
T 2xzm_R 87 ENCFAISSSW--D-------KTLRLWDLRTGTTYKRFVGH----QSEVYSVAFSPDNRQILSAGAE-----------REI 142 (343)
T ss_dssp STTEEEEEET--T-------SEEEEEETTSSCEEEEEECC----CSCEEEEEECSSTTEEEEEETT-----------SCE
T ss_pred CCCEEEEEcC--C-------CcEEEEECCCCcEEEEEcCC----CCcEEEEEECCCCCEEEEEcCC-----------CEE
Confidence 4556666652 2 35788898877543 22211 1111222332 45566667643 346
Q ss_pred EEEECCCC
Q 005655 159 WMLDLKTN 166 (685)
Q Consensus 159 ~~yD~~t~ 166 (685)
.+||+...
T Consensus 143 ~~wd~~~~ 150 (343)
T 2xzm_R 143 KLWNILGE 150 (343)
T ss_dssp EEEESSSC
T ss_pred EEEeccCC
Confidence 77787643
No 251
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=84.36 E-value=7.7 Score=42.16 Aligned_cols=153 Identities=10% Similarity=0.168 Sum_probs=79.7
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcc--c--CCCCCCCccceEEEE--CCEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN--L--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~--~--~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~ 202 (685)
+++.+.+.+|+|-| +-+|+++.....+.... . .++|.. . -++..+ ++.+|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg-------------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~-i-DAa~~~~~~g~~~fFKg----- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------------RFYMRTNPFYPEVELNFISVFWPQLPNG-L-EAAYEFADRDEVRFFKG----- 326 (450)
T ss_dssp EEEEETTEEEEEET-------------TEEEECCTTSSSCEEEEGGGTCTTSCSS-C-CEEEEEGGGTEEEEEET-----
T ss_pred eEEecCCeEEEEeC-------------CEEEEEcCCCCcccceehhHhccCCCCC-e-eEEEEEcCCCeEEEEeC-----
Confidence 55567899999987 35788876654443221 1 112321 1 223333 689999977
Q ss_pred CceeeeceEEEEEcCCCc--e-EEec-cCCCCCCCC--CccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEE
Q 005655 203 REVRYYNDLYVFDLDQFK--W-QEIK-PRFGSMWPS--PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLW 275 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W-~~v~-~~~~~~~P~--~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~ 275 (685)
+.+|+|+..+-. + ..+. .. .+|. .....++... ++++|+|=|. .+|
T Consensus 327 ------~~~W~~~~~~~~~gyP~~i~~~~---g~P~~~~~IDAA~~~~~~~k~yfFkG~------------------~yw 379 (450)
T 1su3_A 327 ------NKYWAVQGQNVLHGYPKDIYSSF---GFPRTVKHIDAALSEENTGKTYFFVAN------------------KYW 379 (450)
T ss_dssp ------TEEEEEETTEECTTCSEEHHHHH---CCCTTCCCCCEEEEETTTTEEEEEETT------------------EEE
T ss_pred ------CEEEEecCCcccCCCceeeehhh---cCCCCCCccceEEEEcCCCeEEEEeCC------------------EEE
Confidence 356777642200 0 1111 00 0122 1222222222 6899999763 388
Q ss_pred EEeCCCceeEE-----eecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 276 SLDPRTWEWSK-----VKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 276 ~yd~~t~~W~~-----~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
+||..+.+-.. +.. +.+-.+..--++...++++|+|=|. ..|.||..+.+-..
T Consensus 380 ~yd~~~~~~~~gYPk~I~~-~fpgip~~iDAA~~~~g~~YFFkg~----------------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 380 RYDEYKRSMDPGYPKMIAH-DFPGIGHKVDAVFMKDGFFYFFHGT----------------RQYKFDPKTKRILT 437 (450)
T ss_dssp EEETTTTEECSSCSEEHHH-HSTTSCSCCSEEEEETTEEEEEETT----------------EEEEEETTTTEEEE
T ss_pred EEeCCCccccCCCCcchhh-cCCCCCCCccEEEEcCCeEEEEeCC----------------EEEEEECCcceEec
Confidence 99876533211 110 0111121122444568999999774 37899988776554
No 252
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=84.15 E-value=17 Score=41.63 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=43.9
Q ss_pred EEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCcc
Q 005655 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 74 ~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~ 151 (685)
..+.| +++.++|+......-+.....++|+||+.+++...+.... . . ...+.+ +++.++|+-
T Consensus 67 ~~~Sp--dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~--~-~--~~~~~~SPdG~~la~~~--------- 130 (740)
T 4a5s_A 67 YSISP--DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIP--N-N--TQWVTWSPVGHKLAYVW--------- 130 (740)
T ss_dssp EEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC--T-T--EEEEEECSSTTCEEEEE---------
T ss_pred eEECC--CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCC--C-c--ceeeEECCCCCEEEEEE---------
Confidence 45566 5666666653222222234578999999999876654421 1 1 122222 343334431
Q ss_pred ccccCeEEEEECCCCcEEEccc
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
-+++|++|+.++.-.++..
T Consensus 131 ---~~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 131 ---NNDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp ---TTEEEEESSTTSCCEECCS
T ss_pred ---CCeEEEEECCCCceEEEcC
Confidence 1467788877776666654
No 253
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=84.06 E-value=22 Score=37.36 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=13.3
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 005655 70 SNCSLNINPLKETELILYGG 89 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG 89 (685)
..|++++.. ++.||.+|-
T Consensus 116 ~~h~~al~~--~G~v~~wG~ 133 (389)
T 3kci_A 116 GKHCLALSS--EGEVYSWGE 133 (389)
T ss_dssp CSEEEEEET--TSCEEEEEC
T ss_pred CCeEEEEcC--CCCEEEEeC
Confidence 357777664 689999995
No 254
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=83.49 E-value=18 Score=36.04 Aligned_cols=109 Identities=8% Similarity=0.053 Sum_probs=52.0
Q ss_pred cEEEEEcCCCcEEEecCCCCCCC-cceeEEEEE-CCEEEEE----cCccCC--CCCccccccCeEEEEECCCCcEEEccc
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIF----GGEFTS--PNQERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~-R~~ha~v~~-~~~iyvf----GG~~~s--~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
.|++|++. .+...+.......+ ..-+.+++. ++.||+. |-.... ...........+++||+.++.++.+.
T Consensus 108 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 108 AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp EEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred EEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 57788876 66665543210000 111223333 5788885 422100 00000011357999999888887764
Q ss_pred CCCCCCCccceEEEE-C-CEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 174 KGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 174 ~g~P~~Rsgh~~v~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
+...+ .+++.. + ..||+....... ...+.|++|++....
T Consensus 186 -~~~~p---~gl~~spdg~~lyv~~~~~~~----~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 186 -DLDHP---NGLAFSPDEQTLYVSQTPEQG----HGSVEITAFAWRDGA 226 (305)
T ss_dssp -EESSE---EEEEECTTSSEEEEEECCC-------CCCEEEEEEEETTE
T ss_pred -cCCCC---cceEEcCCCCEEEEEecCCcC----CCCCEEEEEEecCCC
Confidence 12111 223333 3 357776432100 012578999887554
No 255
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=83.46 E-value=25 Score=36.94 Aligned_cols=154 Identities=10% Similarity=0.158 Sum_probs=79.8
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCCcE--EEccc--CCCCCCCccceEEEE--CCEEEEEccccCCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW--EQLNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W--~~~~~--~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~ 202 (685)
+++.+.+.+|+|=| +.+|+++.....- ..+.. .++| .... ++..+ ++.+|+|-|
T Consensus 185 Av~~~~g~~~fFkg-------------~~~Wr~~~~~~~~~p~~I~~~wpgLP-~~iD-Aa~~~~~~g~~~fFkg----- 244 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------------RFFWLKVSERPKTSVNLISSLWPTLP-SGIE-AAYEIEARNQVFLFKD----- 244 (365)
T ss_dssp CEEEETTEEEEEET-------------TEEEECCSSCCCCCEEEHHHHCSSCC-SSCC-EEEEEGGGTEEEEEET-----
T ss_pred eEEEcCCeEEEEeC-------------CEEEEEcCCCccCCccchhhhccCCC-CCcc-EEEEecCCCEEEEEeC-----
Confidence 45556899999977 4577876544221 11211 1234 1222 33333 789999977
Q ss_pred CceeeeceEEEEEcCCCc--e-EEeccCCCCCCCCC--ccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEE
Q 005655 203 REVRYYNDLYVFDLDQFK--W-QEIKPRFGSMWPSP--RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (685)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W-~~v~~~~~~~~P~~--Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (685)
+.+|+|+..... + ..|... .+|.. ....++... ++++|+|=|. ..|+
T Consensus 245 ------~~yWr~~~~~~~~gyPk~I~~~---GlP~~~~~IDAA~~~~~~~~~yfFkG~------------------~yw~ 297 (365)
T 3ba0_A 245 ------DKYWLISNLRPEPNYPKSIHSF---GFPNFVKKIDAAVFNPRFYRTYFFVDN------------------QYWR 297 (365)
T ss_dssp ------TEEEECSTTSCTTTCSEETTTT---TCCTTCCCCCEEEEETTTTEEEEEETT------------------EEEE
T ss_pred ------CEEEEEcCCcccCCCCceeeec---cCCCCCCCcCEEEEeCCCCEEEEEECC------------------EEEE
Confidence 356777643211 1 111111 12331 122222222 6899999663 3889
Q ss_pred EeCCCceeEEeec----CCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEE
Q 005655 277 LDPRTWEWSKVKK----IGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (685)
Q Consensus 277 yd~~t~~W~~~~~----~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (685)
||..+.+-..--+ .+.+..+..--++... ++++|+|=|. ..|.||..+.+-..
T Consensus 298 yd~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg~----------------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 298 YDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQGS----------------NQFEYDFLLQRITK 355 (365)
T ss_dssp EETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEETT----------------EEEEEETTTTEEEE
T ss_pred EeCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeCC----------------EEEEEECCccEEec
Confidence 9976653211000 0011112222344444 8899999774 38999998877665
No 256
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=83.15 E-value=52 Score=35.50 Aligned_cols=169 Identities=7% Similarity=-0.004 Sum_probs=79.8
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.+.++|.....-..+.... ..-.+++.. ++..++.|+.. ..+.+||.....-..+.. . .
T Consensus 326 ~i~~w~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~~~~d-----------g~v~~~~~~~~~~~~~~~--~---~ 385 (577)
T 2ymu_A 326 TVKLWNRNGQHLQTLTGHS----SSVWGVAFSPDGQTIASASDD-----------KTVKLWNRNGQLLQTLTG--H---S 385 (577)
T ss_dssp CEEEEETTSCEEEEECCCS----SCEEEEEECTTSSEEEEEETT-----------SEEEEEETTCCEEEEEEC--C---S
T ss_pred eEEEEeCCCCeeEEEeCCC----CCEEEEEECCCCCEEEEEeCC-----------CEEEEEcCCCCEEEEecC--C---C
Confidence 4566776665554443211 111222222 45666666642 346677765444333322 1 1
Q ss_pred ccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 181 sgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
..-..+.+ ++.+++.|+.+ ..|.+||.....-..+... ..+ -.+++.. ++.+++.|+.++.
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d---------~~v~~~~~~~~~~~~~~~~-----~~~--v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDD---------KTVKLWNRNGQLLQTLTGH-----SSS--VWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETT---------SEEEEECTTCCEEEEEECC-----SSC--EEEEEECTTSSEEEEEETTSE
T ss_pred CCeEEEEECCCCCEEEEEeCC---------CEEEEEeCCCCEEEEecCC-----CCC--eEEEEECCCCCEEEEEcCCCE
Confidence 11122333 45666666642 3567777544332222221 111 1122222 5667777766543
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEE
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~y 336 (685)
+.+||.....-..+.. ....-.++++. ++++++.|+.. ..|.+|
T Consensus 450 ----------------v~~w~~~~~~~~~~~~-----~~~~v~~~~~spd~~~las~~~d--------------~~i~iw 494 (577)
T 2ymu_A 450 ----------------VKLWNRNGQLLQTLTG-----HSSSVRGVAFSPDGQTIASASDD--------------KTVKLW 494 (577)
T ss_dssp ----------------EEEEETTSCEEEEEEC-----CSSCEEEEEECTTSCEEEEEETT--------------SEEEEE
T ss_pred ----------------EEEEECCCCEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCC--------------CEEEEE
Confidence 5667765544443332 11112233333 66777777643 247788
Q ss_pred ECCCC
Q 005655 337 QLDNH 341 (685)
Q Consensus 337 d~~t~ 341 (685)
|....
T Consensus 495 ~~~~~ 499 (577)
T 2ymu_A 495 NRNGQ 499 (577)
T ss_dssp ETTSC
T ss_pred cCCCC
Confidence 86543
No 257
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=82.60 E-value=48 Score=34.28 Aligned_cols=204 Identities=12% Similarity=0.108 Sum_probs=100.1
Q ss_pred eEEEE---eccCCCEEEEEcC---ee-cCCCceeeeccEEEEEcC---CC--cEEE-ecCCC------CCCCcceeEEEE
Q 005655 72 CSLNI---NPLKETELILYGG---EF-YNGNKTYVYGDLYRYDVE---KQ--EWKV-ISSPN------SPPPRSAHQAVS 132 (685)
Q Consensus 72 ~s~~~---~p~~~~~L~vfGG---~~-~~g~~~~~~ndv~~yd~~---~~--~W~~-l~s~~------~P~~R~~ha~v~ 132 (685)
.++.+ .| .++|+|+-- .+ ..+....-.+.|++||+. ++ .|.. ++... .+....+..-++
T Consensus 66 sGl~~~~~D~--~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva 143 (334)
T 2p9w_A 66 SGLSLLTHDN--SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA 143 (334)
T ss_dssp EEEEESSSSS--CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred eEEEEeccCC--CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence 45555 35 578888621 11 112221224679999988 43 4652 21100 000112233344
Q ss_pred E--CCEEEEEcCccCCCCCccccccCeEEEEECCCCc---EEEcccCCCCCCCccceE-EEE--CCEEEEEccccCCCCc
Q 005655 133 W--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQLNLKGCPSPRSGHRM-VLY--KHKIIVFGGFYDTLRE 204 (685)
Q Consensus 133 ~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~---W~~~~~~g~P~~Rsgh~~-v~~--~~~lyv~GG~~~~~~~ 204 (685)
+ .+.+||.+... +..+|++++.... |-.-.+ .+..|.|... ++. ++.|++..+ .
T Consensus 144 vD~~GnaYVt~s~~----------~~~I~rV~pdG~~~~~~~~~~~--~~~~~~G~nGIv~~pdg~~Liv~~~-~----- 205 (334)
T 2p9w_A 144 QDRDGNSYVAFALG----------MPAIARVSADGKTVSTFAWESG--NGGQRPGYSGITFDPHSNKLIAFGG-P----- 205 (334)
T ss_dssp ECTTSCEEEEEEES----------SCEEEEECTTSCCEEEEEECCC--CSSSCCSCSEEEEETTTTEEEEESS-S-----
T ss_pred ECCCCCEEEeCCCC----------CCeEEEEeCCCCEEeeeeecCC--CcccccCcceEEEeCCCCEEEEEcC-C-----
Confidence 4 58999976531 1459999997542 543222 2334555544 444 446777655 2
Q ss_pred eeeeceEEEEEcCCCceEEeccC--CC-CCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCC
Q 005655 205 VRYYNDLYVFDLDQFKWQEIKPR--FG-SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (685)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~--~~-~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (685)
..|+.||+.+-....++.. .. +.++ .-.+....-.++.++++.-... ..+++--..
T Consensus 206 ----g~L~~fD~~~pv~~~v~~~~~G~~~~~~-~~dgilp~~~~G~vllV~~~~~----------------~~~~l~S~D 264 (334)
T 2p9w_A 206 ----RALTAFDVSKPYAWPEPVKINGDFGTLS-GTEKIVTVPVGNESVLVGARAP----------------YAISFRSWD 264 (334)
T ss_dssp ----SSEEEEECSSSSCCCEECEESSCCCCCT-TEEEEEEEEETTEEEEEEEETT----------------EEEEEECSS
T ss_pred ----CeEEEEcCCCCcceeecccccCCccccc-CcccccccccCCEEEEEEcCCC----------------CEEEEECCC
Confidence 4689999874322112111 00 0001 1111111224777766543211 134444344
Q ss_pred ceeEEeecCCCCCCC--cceeEE-EE----ECCeEEEecceec
Q 005655 282 WEWSKVKKIGMPPGP--RAGFSM-CV----HKKRALLFGGVVD 317 (685)
Q Consensus 282 ~~W~~~~~~g~~P~~--R~g~s~-~~----~~~~iyvfGG~~~ 317 (685)
. |......+..|.+ -.+++. ++ .+++||++.+..+
T Consensus 265 g-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~f~ 306 (334)
T 2p9w_A 265 N-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAFFD 306 (334)
T ss_dssp T-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECCGG
T ss_pred C-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeeecC
Confidence 4 8877655544442 134444 34 4689999987654
No 258
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=82.19 E-value=44 Score=33.58 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=32.2
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++.+++.|+.. ..+.+||+.++.....-. .... .-.++.+ ++..++.||.+ ..|
T Consensus 87 ~~~~l~s~s~D-----------~~v~lwd~~~~~~~~~~~--~h~~--~v~~v~~sp~~~~l~s~~~d---------~~i 142 (343)
T 2xzm_R 87 ENCFAISSSWD-----------KTLRLWDLRTGTTYKRFV--GHQS--EVYSVAFSPDNRQILSAGAE---------REI 142 (343)
T ss_dssp STTEEEEEETT-----------SEEEEEETTSSCEEEEEE--CCCS--CEEEEEECSSTTEEEEEETT---------SCE
T ss_pred CCCEEEEEcCC-----------CcEEEEECCCCcEEEEEc--CCCC--cEEEEEECCCCCEEEEEcCC---------CEE
Confidence 35566666643 457888988776432211 0111 1122333 45566667753 357
Q ss_pred EEEEcCC
Q 005655 212 YVFDLDQ 218 (685)
Q Consensus 212 ~~yD~~t 218 (685)
.+||+..
T Consensus 143 ~~wd~~~ 149 (343)
T 2xzm_R 143 KLWNILG 149 (343)
T ss_dssp EEEESSS
T ss_pred EEEeccC
Confidence 7777764
No 259
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=82.01 E-value=5.5 Score=38.98 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=36.5
Q ss_pred CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee-c--CCCCCC-----CcceeEEEE--ECCeEEEecc
Q 005655 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK-K--IGMPPG-----PRAGFSMCV--HKKRALLFGG 314 (685)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~-~--~g~~P~-----~R~g~s~~~--~~~~iyvfGG 314 (685)
++++|+|-|. .+|+||..+.+...-+ . .+.+.. +..--++.. .++++|+|=|
T Consensus 127 ~gk~yfFkG~------------------~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG 188 (225)
T 3oyo_A 127 GKEVYLFKGN------------------KYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG 188 (225)
T ss_dssp TTEEEEEETT------------------EEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET
T ss_pred CCcEEEEeCC------------------eEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC
Confidence 7899999774 2889997665544310 0 011111 222223333 3789999987
Q ss_pred eecccCCccccccccCCcEEEEECC
Q 005655 315 VVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
. ..|+||..
T Consensus 189 ~----------------~ywr~d~~ 197 (225)
T 3oyo_A 189 Q----------------NYVRIDFT 197 (225)
T ss_dssp T----------------EEEEEECC
T ss_pred C----------------EEEEEeCC
Confidence 4 37999987
No 260
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=82.00 E-value=42 Score=33.12 Aligned_cols=89 Identities=11% Similarity=0.262 Sum_probs=44.2
Q ss_pred cEEEEEcC-CCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCC-cEEEcccCCCCC
Q 005655 102 DLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCPS 178 (685)
Q Consensus 102 dv~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g~P~ 178 (685)
.+++||+. ...|...... + ...+.+.. ++.||+... -..+++||+... .|..... .
T Consensus 118 ~l~~~d~~g~~~~~~~~~~----~-~~~~~~~~~~g~l~vgt~------------~~~l~~~d~~g~~~~~~~~~----~ 176 (330)
T 3hxj_A 118 HLYAINTDGTEKWRFKTKK----A-IYATPIVSEDGTIYVGSN------------DNYLYAINPDGTEKWRFKTN----D 176 (330)
T ss_dssp EEEEECTTSCEEEEEECSS----C-CCSCCEECTTSCEEEECT------------TSEEEEECTTSCEEEEEECS----S
T ss_pred EEEEEcCCCCEEEEEcCCC----c-eeeeeEEcCCCEEEEEcC------------CCEEEEECCCCCEeEEEecC----C
Confidence 58889887 3356644221 1 12223344 566776321 145888888722 2554321 1
Q ss_pred CCccceEEE-ECCEEEEEccccCCCCceeeeceEEEEEcCC-CceEEe
Q 005655 179 PRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (685)
Q Consensus 179 ~Rsgh~~v~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (685)
.. -.+++. -++.||+-. ..+++||... ..|...
T Consensus 177 ~~-~~~~~~d~~g~l~v~t------------~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 177 AI-TSAASIGKDGTIYFGS------------DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp CC-CSCCEECTTCCEEEES------------SSEEEECTTSCEEEEEC
T ss_pred Cc-eeeeEEcCCCEEEEEe------------CEEEEECCCCcEEEEEc
Confidence 21 222333 366777643 2477888432 345543
No 261
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=81.97 E-value=14 Score=35.81 Aligned_cols=101 Identities=20% Similarity=0.476 Sum_probs=55.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcE--EEecC--CCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccC
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISS--PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYK 156 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W--~~l~s--~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~ 156 (685)
++++|+|=|. .+|+|+.....+ ..|.. +.+| ..--|+...++++|+|-| +
T Consensus 28 ~g~~yfFkg~-----------~~Wr~~~~~~~~~p~~Is~~wpgLP--~~IDAA~~~~~~~yfFkG-------------~ 81 (219)
T 1hxn_A 28 HGATYVFSGS-----------HYWRLDTNRDGWHSWPIAHQWPQGP--STVDAAFSWEDKLYLIQD-------------T 81 (219)
T ss_dssp TSCEEEEETT-----------EEEESSSSSCTTCCEEGGGTCTTSC--SSCSEEEEETTEEEEEET-------------T
T ss_pred CCcEEEEeCC-----------EEEEEcCCCCCCCceEhhhhccCCC--CCccEEEEECCcEEEecC-------------C
Confidence 5888988873 356655433221 12221 1223 222344445899999977 4
Q ss_pred eEEEEECCCC-cE-----EEccc-CCCCCC--Cc-cceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCC
Q 005655 157 DFWMLDLKTN-QW-----EQLNL-KGCPSP--RS-GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 157 dv~~yD~~t~-~W-----~~~~~-~g~P~~--Rs-gh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (685)
.+|+|+..++ +- ..|.. .|+|.. .. --+++.+ ++++|+|-| +..|+||..+
T Consensus 82 ~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~ 144 (219)
T 1hxn_A 82 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLKS 144 (219)
T ss_dssp EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGGG
T ss_pred EEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-----------CEEEEEeCCC
Confidence 6899986532 11 12221 233443 11 2233334 579999988 4579999765
No 262
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=81.87 E-value=44 Score=33.30 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=54.8
Q ss_pred ccEEEEEcCCCcE-EEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccc-cCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHH-YKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W-~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~-~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
..+|++|+.+++. +.++. + ....++..++.|++.+....... ... ...+|.+| ++.+..+...
T Consensus 152 ~~l~~~d~~~~~~~~~l~~---~---~~~~~~~spdg~~~~~~~~~~~~---~~~~~~~l~~~d--~~~~~~l~~~---- 216 (347)
T 2gop_A 152 TTFWIFDTESEEVIEEFEK---P---RFSSGIWHRDKIVVNVPHREIIP---QYFKFWDIYIWE--DGKEEKMFEK---- 216 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE---E---TTCEEEEETTEEEEEEECCCSSC---CSSCCEEEEEEE--TTEEEEEEEE----
T ss_pred ceEEEEECCCCeEEeeecC---C---CcccccCCCCeEEEEEecccccc---cccccccEEEeC--CCceEEeccC----
Confidence 5799999999887 66654 1 22233334433444443221100 001 35799999 7778776541
Q ss_pred CCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 179 ~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
..+..+.-++..+++++...... ......||++| +..+..+..
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~~-~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKKY-MSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSSC-CCSSCEEEEEC--SSCEEESST
T ss_pred --cceeeECCCCCEEEEEEccccCC-ccccceEEEEC--CCceEeccc
Confidence 12222234555444444322100 11245789998 666665543
No 263
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=81.28 E-value=41 Score=32.54 Aligned_cols=160 Identities=7% Similarity=0.024 Sum_probs=84.9
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~ 149 (685)
+.+++.|. ++.||+.-.. .+.+++|++....-..+.... .. .-..+++. ++.||+.....
T Consensus 82 ~~ia~d~~-~~~lyv~d~~---------~~~I~~~~~~g~~~~~~~~~~--~~-~P~~i~vd~~~g~lyv~~~~~----- 143 (267)
T 1npe_A 82 EGIALDHL-GRTIFWTDSQ---------LDRIEVAKMDGTQRRVLFDTG--LV-NPRGIVTDPVRGNLYWTDWNR----- 143 (267)
T ss_dssp EEEEEETT-TTEEEEEETT---------TTEEEEEETTSCSCEEEECSS--CS-SEEEEEEETTTTEEEEEECCS-----
T ss_pred cEEEEEec-CCeEEEEECC---------CCEEEEEEcCCCCEEEEEECC--CC-CccEEEEeeCCCEEEEEECCC-----
Confidence 44555542 3567665431 246778887654433332211 11 12344444 58899875321
Q ss_pred ccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
..+.++++++....-..+...+ ...-+++++- +++||+.-.. .+.|++||+....-..+...
T Consensus 144 ----~~~~I~~~~~dg~~~~~~~~~~---~~~P~gia~d~~~~~lyv~d~~---------~~~I~~~~~~g~~~~~~~~~ 207 (267)
T 1npe_A 144 ----DNPKIETSHMDGTNRRILAQDN---LGLPNGLTFDAFSSQLCWVDAG---------THRAECLNPAQPGRRKVLEG 207 (267)
T ss_dssp ----SSCEEEEEETTSCCCEEEECTT---CSCEEEEEEETTTTEEEEEETT---------TTEEEEEETTEEEEEEEEEC
T ss_pred ----CCcEEEEEecCCCCcEEEEECC---CCCCcEEEEcCCCCEEEEEECC---------CCEEEEEecCCCceEEEecC
Confidence 1256888888654433332211 1222334443 5688886432 36789999875432222111
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
. ..| +++++.++.||+.-.... .++++|+.+.+-...-
T Consensus 208 --~--~~P---~gi~~d~~~lyva~~~~~----------------~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 208 --L--QYP---FAVTSYGKNLYYTDWKTN----------------SVIAMDLAISKEMDTF 245 (267)
T ss_dssp --C--CSE---EEEEEETTEEEEEETTTT----------------EEEEEETTTTEEEEEE
T ss_pred --C--CCc---eEEEEeCCEEEEEECCCC----------------eEEEEeCCCCCceEEE
Confidence 1 222 345566889998654332 3889999877655443
No 264
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=81.08 E-value=47 Score=33.10 Aligned_cols=144 Identities=12% Similarity=0.014 Sum_probs=70.2
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeE
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDF 158 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv 158 (685)
++.+++.|+. + ..+.+||+.+++-. .+.... ..-.+++.. ++.+++.|+... .+
T Consensus 76 dg~~l~s~s~--D-------~~v~~wd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~s~D~-----------~i 131 (319)
T 3frx_A 76 DGAYALSASW--D-------KTLRLWDVATGETYQRFVGHK----SDVMSVDIDKKASMIISGSRDK-----------TI 131 (319)
T ss_dssp TSSEEEEEET--T-------SEEEEEETTTTEEEEEEECCS----SCEEEEEECTTSCEEEEEETTS-----------CE
T ss_pred CCCEEEEEeC--C-------CEEEEEECCCCCeeEEEccCC----CcEEEEEEcCCCCEEEEEeCCC-----------eE
Confidence 4566666662 2 35788898887543 222111 111222222 466777777543 36
Q ss_pred EEEECCCCcEEEcccCCCCCCCccceEEEE-------CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC
Q 005655 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (685)
Q Consensus 159 ~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (685)
.+||+....-..+.. .. .. -.++... ++.+++.||.+ ..|.+||+.+..-...-..
T Consensus 132 ~vwd~~~~~~~~~~~--h~-~~-v~~~~~~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~---- 194 (319)
T 3frx_A 132 KVWTIKGQCLATLLG--HN-DW-VSQVRVVPNEKADDDSVTIISAGND---------KMVKAWNLNQFQIEADFIG---- 194 (319)
T ss_dssp EEEETTSCEEEEECC--CS-SC-EEEEEECCC------CCEEEEEETT---------SCEEEEETTTTEEEEEECC----
T ss_pred EEEECCCCeEEEEec--cC-Cc-EEEEEEccCCCCCCCccEEEEEeCC---------CEEEEEECCcchhheeecC----
Confidence 677876543333221 11 11 1111111 22355556643 3578888876543322111
Q ss_pred CCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 232 ~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
....-.+++.. ++.+++.||.++. +.++|+.+.+
T Consensus 195 --h~~~v~~~~~sp~g~~l~s~~~dg~----------------i~iwd~~~~~ 229 (319)
T 3frx_A 195 --HNSNINTLTASPDGTLIASAGKDGE----------------IMLWNLAAKK 229 (319)
T ss_dssp --CCSCEEEEEECTTSSEEEEEETTCE----------------EEEEETTTTE
T ss_pred --CCCcEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCc
Confidence 00111122233 6677888887654 7788877654
No 265
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=80.52 E-value=14 Score=35.83 Aligned_cols=103 Identities=20% Similarity=0.440 Sum_probs=57.8
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc---EEEecCCCCCCC-cceeEEEEE--CCEEEEEcCccCCCCCccccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPP-RSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~---W~~l~s~~~P~~-R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~ 154 (685)
++++|+|=| +.+|+|+..+-. =+.|.....|.. ..-.++... ++++|+|-|
T Consensus 87 ~~k~yfFkG-----------~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG------------ 143 (218)
T 1gen_A 87 EEKAVFFAG-----------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG------------ 143 (218)
T ss_dssp TTEEEEEET-----------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET------------
T ss_pred CCEEEEEeC-----------CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC------------
Confidence 478999987 357888842100 011222122221 122344443 689999977
Q ss_pred cCeEEEEECCCCcEEE-----cc--cCCCCCCCccceEEEEC--CEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 155 YKDFWMLDLKTNQWEQ-----LN--LKGCPSPRSGHRMVLYK--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 155 ~~dv~~yD~~t~~W~~-----~~--~~g~P~~Rsgh~~v~~~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
+..|+||..+++-.. +. -.++| ..-.++..++ +.+|+|-| +..|.||..+..
T Consensus 144 -~~ywr~d~~~~~v~~gyPr~i~~~w~g~p--~~idaAf~~~~~g~~YfFkg-----------~~y~~~~~~~~~ 204 (218)
T 1gen_A 144 -DKFWRYNEVKKKMDPGFPKLIADAWNAIP--DNLDAVVDLQGGGHSYFFKG-----------AYYLKLENQSLK 204 (218)
T ss_dssp -TEEEEEETTTTEECSSCCEEHHHHSSSCC--SSCSEEEECTTTCEEEEEET-----------TEEEEEETTEEE
T ss_pred -CEEEEEECccccccCCCCcchhhccCCCC--CCCCEEEEEcCCCcEEEEEC-----------CEEEEEECCcee
Confidence 568999998764321 11 01222 2334555665 89999977 357788775443
No 266
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=79.98 E-value=21 Score=42.77 Aligned_cols=147 Identities=16% Similarity=0.116 Sum_probs=78.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEE-EEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW-MLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~-~yD~~t~~W~~~~~~g~P~~R 180 (685)
.++.++..+.....+... +..+..+.... ++..+++++. -..+| +||+.+.....+.. ....
T Consensus 318 ~i~~~~~~~~~~~~~~~~--~~~~~~~~~~s-dg~~l~~~s~-----------~~~l~~~~d~~~~~~~~l~~---~~~~ 380 (1045)
T 1k32_A 318 QAFIQDVSGTYVLKVPEP--LRIRYVRRGGD-TKVAFIHGTR-----------EGDFLGIYDYRTGKAEKFEE---NLGN 380 (1045)
T ss_dssp EEEEECTTSSBEEECSCC--SCEEEEEECSS-SEEEEEEEET-----------TEEEEEEEETTTCCEEECCC---CCCS
T ss_pred EEEEEcCCCCceEEccCC--CcceEEeeeEc-CCCeEEEEEC-----------CCceEEEEECCCCCceEecC---Cccc
Confidence 678888887776665432 11122222223 5555555442 14689 99998887766542 1112
Q ss_pred ccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCC
Q 005655 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (685)
Q Consensus 181 sgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~ 257 (685)
...+.+ ++..+++++. -..++++|+.+.+-..+.... ..+. .+++.. +++.+++++....
T Consensus 381 --~~~~~~SpDG~~la~~~~---------~~~v~~~d~~tg~~~~~~~~~----~~~v--~~~~~SpDG~~la~~~~~~~ 443 (1045)
T 1k32_A 381 --VFAMGVDRNGKFAVVAND---------RFEIMTVDLETGKPTVIERSR----EAMI--TDFTISDNSRFIAYGFPLKH 443 (1045)
T ss_dssp --EEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEECS----SSCC--CCEEECTTSCEEEEEEEECS
T ss_pred --eeeeEECCCCCEEEEECC---------CCeEEEEECCCCceEEeccCC----CCCc--cceEECCCCCeEEEEecCcc
Confidence 223333 5666666653 247999999988877665321 1111 122222 5555566654320
Q ss_pred CCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
. ...+.....++++|+.+.....+.
T Consensus 444 --~----~~~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 444 --G----ETDGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp --S----TTCSCCEEEEEEEETTTTEEEECS
T ss_pred --c----cccCCCCCeEEEEECCCCcEEEee
Confidence 0 000123457999999887755443
No 267
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=79.04 E-value=49 Score=32.16 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=17.9
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE 112 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~ 112 (685)
.++...|...+.+++.|+. + +.+.+||+.+..
T Consensus 114 ~~~~~~~~~~~~~l~~~~~--d-------g~v~iwd~~~~~ 145 (351)
T 3f3f_A 114 YSVKFAPAHLGLKLACLGN--D-------GILRLYDALEPS 145 (351)
T ss_dssp EEEEECCGGGCSEEEEEET--T-------CEEEEEECSSTT
T ss_pred eEEEEcCCCCCcEEEEecC--C-------CcEEEecCCChH
Confidence 3445555211566666662 2 357888887653
No 268
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=78.49 E-value=86 Score=34.61 Aligned_cols=181 Identities=7% Similarity=0.021 Sum_probs=89.6
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (685)
.+.+||..+.+....-.. ....-.+++.. ++.+++.||.+ ..+.+||+.++.....-.. .....
T Consensus 171 ~v~lwd~~~~~~~~~l~~---H~~~V~~v~fspdg~~las~s~D-----------~~i~lwd~~~g~~~~~~~~-~~~~~ 235 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGE---HTKFVHSVRYNPDGSLFASTGGD-----------GTIVLYNGVDGTKTGVFED-DSLKN 235 (611)
T ss_dssp CEEEEETTTBEEEEEECC---CSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEECBC-TTSSS
T ss_pred eEEEEECCCCeEeeeecc---ccCceEEEEECCCCCEEEEEECC-----------CcEEEEECCCCcEeeeecc-ccccc
Confidence 567778766544322111 11112222222 46777777754 3477889887765432211 00011
Q ss_pred ccc----eEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecc
Q 005655 181 SGH----RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254 (685)
Q Consensus 181 sgh----~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~ 254 (685)
.+| ..+.+ ++.+++.||.+ ..|.+||+.+.+....-... .........+...+..++.++.
T Consensus 236 ~~h~~~V~~v~~spdg~~l~s~s~D---------~~v~lWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 236 VAHSGSVFGLTWSPDGTKIASASAD---------KTIKIWNVATLKVEKTIPVG----TRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp CSSSSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEECC----SSGGGCEEEEEECSSCEEEEET
T ss_pred cccCCCEEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCceeeeecCC----CCccceeEEEEEcCCEEEEEeC
Confidence 122 12333 56677777753 46888999887665433221 1111112222335566666666
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcE
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (685)
.+. +..+++.+..-..... + ....-.++++. +++.++.|+.. ..|
T Consensus 303 d~~----------------i~~~~~~~~~~~~~~~-g---h~~~v~~l~~spdg~~l~s~s~D--------------~~v 348 (611)
T 1nr0_A 303 NGF----------------INFVNPELGSIDQVRY-G---HNKAITALSSSADGKTLFSADAE--------------GHI 348 (611)
T ss_dssp TCC----------------EEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT--------------SCE
T ss_pred CCc----------------EEEEeCCCCCcceEEc-C---CCCCEEEEEEeCCCCEEEEEeCC--------------CcE
Confidence 544 5677776655322211 1 11112233333 56667777653 347
Q ss_pred EEEECCCCcEE
Q 005655 334 YGFQLDNHRWY 344 (685)
Q Consensus 334 ~~yd~~t~~W~ 344 (685)
.+||+.+....
T Consensus 349 ~~Wd~~~~~~~ 359 (611)
T 1nr0_A 349 NSWDISTGISN 359 (611)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcee
Confidence 88888776543
No 269
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=78.18 E-value=16 Score=34.79 Aligned_cols=102 Identities=18% Similarity=0.416 Sum_probs=57.7
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCCc---EEEecCC--CCCCCcceeEEEEE--CCEEEEEcCccCCCCCcccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSP--NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFH 153 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~---W~~l~s~--~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~ 153 (685)
++++|+|-| +.+|+|+..+.. =+.|... ..|..+. .++... ++++|+|-|
T Consensus 61 ~g~~yfFkg-----------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~I-DAA~~~~~~g~~yfFkG----------- 117 (196)
T 3c7x_A 61 DGKFVFFKG-----------DKHWVFDEASLEPGYPKHIKELGRGLPTDKI-DAALFWMPNGKTYFFRG----------- 117 (196)
T ss_dssp TSCEEEEET-----------TEEEEEETTEECTTCSEEGGGTCBSCCSSCC-SEEEEETTTTEEEEEET-----------
T ss_pred CCcEEEecC-----------CEEEEEeCCcccCCCCeEhhhcCCCCCCCcc-cEEEEEccCCEEEEEEC-----------
Confidence 578899887 356888754211 0122221 1232222 233333 589999977
Q ss_pred ccCeEEEEECCCCcEE-----Eccc-CCCCCCCccceEEEE-CC-EEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 154 HYKDFWMLDLKTNQWE-----QLNL-KGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 154 ~~~dv~~yD~~t~~W~-----~~~~-~g~P~~Rsgh~~v~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
+..|+||..+++-. .+.. .++|. .-.++..+ ++ ++|+|-| +..|+||..+.+
T Consensus 118 --~~yw~yd~~~~~v~~gyPk~i~~~~gip~--~idaAf~~~~~~~~YfFkg-----------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 118 --NKYYRFNEELRAVDSEYPKNIKVWEGIPE--SPRGSFMGSDEVFTYFYKG-----------NKYWKFNNQKLK 177 (196)
T ss_dssp --TEEEEEETTTTEECTTCSEEGGGSBTCCS--SCSEEEECTTSSEEEEEET-----------TEEEEEETTTTE
T ss_pred --CEEEEEeCCcccccCCCCccHHHCCCcCC--CcceeEEecCCCEEEEEEC-----------CEEEEEECCcce
Confidence 56899998775432 1211 12332 23444455 44 8999977 457999987753
No 270
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=77.67 E-value=1e+02 Score=36.72 Aligned_cols=112 Identities=11% Similarity=0.101 Sum_probs=61.5
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCC-C
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-S 178 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P-~ 178 (685)
++|++++...+-+.++... . ....+.+ +++.++|+....... -...+|++|+.++.-..+...... .
T Consensus 34 ~l~~~~~~gg~~~~lt~~~----~-~v~~~~~SPDG~~la~~s~~~~~~-----~~~~i~~~d~~~g~~~~lt~~~~~~~ 103 (1045)
T 1k32_A 34 DLWEHDLKSGSTRKIVSNL----G-VINNARFFPDGRKIAIRVMRGSSL-----NTADLYFYNGENGEIKRITYFSGKST 103 (1045)
T ss_dssp EEEEEETTTCCEEEEECSS----S-EEEEEEECTTSSEEEEEEEESTTC-----CEEEEEEEETTTTEEEECCCCCEEEE
T ss_pred cEEEEECCCCcEEEeeeCC----C-cccCeEECCCCCEEEEEEeeccCC-----CCCeEEEEECCCCCeEEcccCCCccc
Confidence 7999999998888776521 1 1223333 566555554331100 125799999998876665441100 0
Q ss_pred CCc-cceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 179 PRS-GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 179 ~Rs-gh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
+|. ....+.| +++|++.++.... ......+|.+|+.+.....+..
T Consensus 104 ~~~~~~~~~~~SpDg~ll~~~~~~~~---~~~~~~l~~~~~~~g~~~~l~~ 151 (1045)
T 1k32_A 104 GRRMFTDVAGFDPDGNLIISTDAMQP---FSSMTCLYRVENDGINFVPLNL 151 (1045)
T ss_dssp TTEECSEEEEECTTCCEEEEECTTSS---STTCCEEEEEEGGGTEEEECCS
T ss_pred ccccccccccCCCCCEEEEEECCcCC---CcccceEEEEECCCCCeEEecC
Confidence 111 1133444 5665555543221 1124579999998877666554
No 271
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=77.60 E-value=23 Score=35.05 Aligned_cols=90 Identities=16% Similarity=0.266 Sum_probs=44.8
Q ss_pred EEEEEcCCC-cEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECC-CCcEEEcccCCCCCCC
Q 005655 103 LYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK-TNQWEQLNLKGCPSPR 180 (685)
Q Consensus 103 v~~yd~~~~-~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~-t~~W~~~~~~g~P~~R 180 (685)
+++||+... .|..... ... ....++.++.||+... -..+++||+. ...|..... ..
T Consensus 80 l~~~d~~g~~~~~~~~~----~~~-~~~~~~~~~~l~v~t~------------~~~l~~~d~~g~~~~~~~~~----~~- 137 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDTK----KAI-VSDFTIFEDILYVTSM------------DGHLYAINTDGTEKWRFKTK----KA- 137 (330)
T ss_dssp EEEECCCGGGGGGSCC----------CCEEEETTEEEEECT------------TSEEEEECTTSCEEEEEECS----SC-
T ss_pred EEEECCCCcEEEEEECC----CCc-ccCceEECCEEEEEec------------CCEEEEEcCCCCEEEEEcCC----Cc-
Confidence 889987432 3542111 111 1222334888887432 1458888887 334665432 11
Q ss_pred ccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCC-CceEEe
Q 005655 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (685)
Q Consensus 181 sgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (685)
...+.+.. ++.||+- .. ...+++||+.. ..|...
T Consensus 138 ~~~~~~~~~~g~l~vg-t~---------~~~l~~~d~~g~~~~~~~ 173 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVG-SN---------DNYLYAINPDGTEKWRFK 173 (330)
T ss_dssp CCSCCEECTTSCEEEE-CT---------TSEEEEECTTSCEEEEEE
T ss_pred eeeeeEEcCCCEEEEE-cC---------CCEEEEECCCCCEeEEEe
Confidence 12223444 5677763 21 24688898872 235543
No 272
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=76.67 E-value=71 Score=34.37 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=13.4
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 005655 70 SNCSLNINPLKETELILYGG 89 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG 89 (685)
..|++++.. ++.||.+|-
T Consensus 157 ~~hs~alt~--~G~vy~wG~ 174 (473)
T 3of7_A 157 DNMSCALFS--NGEVYAWGT 174 (473)
T ss_dssp SSEEEEEET--TSCEEEEEC
T ss_pred CCEEEEEeC--CCeEEEeeC
Confidence 457777764 689999994
No 273
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=75.78 E-value=1.2e+02 Score=35.06 Aligned_cols=147 Identities=10% Similarity=0.017 Sum_probs=84.4
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++.||+.-.. .+.|+++++....-..+....+..|| ++++. +++||+.-- + ....|
T Consensus 482 ~~~LY~tD~~-----------~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~----g----~~~~I 539 (791)
T 3m0c_C 482 HSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDW----G----TPAKI 539 (791)
T ss_dssp TTEEEEEETT-----------TTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEEC----S----SSCEE
T ss_pred CCcEEEEecC-----------CCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecC----C----CCCeE
Confidence 6799987532 35789999987766655443232222 33442 578998631 1 02568
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccceeEEE--eCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce-eEEee
Q 005655 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVK 288 (685)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~--~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~~~ 288 (685)
+++++....-..+... .+..| .++++ .++.||+.-... ..|+++++.... ...+.
T Consensus 540 ~~~~~dG~~~~~lv~~---~l~~P---~GLavD~~~~~LYwaD~~~----------------~~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 540 KKGGLNGVDIYSLVTE---NIQWP---NGITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILE 597 (791)
T ss_dssp EEEETTSCCEEEEECS---SCSCE---EEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEEE
T ss_pred EEEecCCCceEEEEeC---CCCCc---eEEEEecCCCeEEEEeCCC----------------CcEEEEecCCCceEEEec
Confidence 8888875544333321 11111 12333 378999985332 348888876543 33333
Q ss_pred cCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 289 KIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 289 ~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
..+.++ ..+++++.+++||+.-.. .+.|+++|..+.
T Consensus 598 ~~~~l~---~P~glav~~~~lYwtD~~--------------~~~I~~~dk~tG 633 (791)
T 3m0c_C 598 DEKRLA---HPFSLAVFEDKVFWTDII--------------NEAIFSANRLTG 633 (791)
T ss_dssp CTTTTS---SEEEEEEETTEEEEEETT--------------TTEEEEEETTTC
T ss_pred CCCccC---CCCEEEEeCCEEEEEECC--------------CCEEEEEeCCCC
Confidence 222222 346788889999987533 356888886554
No 274
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=75.47 E-value=18 Score=40.98 Aligned_cols=82 Identities=9% Similarity=0.124 Sum_probs=42.9
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcE---EEecCCCCCCCcceeEEEEECCEEEEEcCccCCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN 148 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W---~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~ 148 (685)
.++...| +++.++|+......-.......++++|+.+++. ..++ ....+.+..-+++.++|+.
T Consensus 63 ~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~------~~~~~~~~SPDG~~la~~~------ 128 (719)
T 1z68_A 63 SNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP------RPIQYLCWSPVGSKLAYVY------ 128 (719)
T ss_dssp SEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC------SSBCCEEECSSTTCEEEEE------
T ss_pred eeEEECC--CCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC------cccccceECCCCCEEEEEE------
Confidence 3555666 566666665311000001235799999998876 3331 1111111112444444442
Q ss_pred CccccccCeEEEEECCCCcEEEccc
Q 005655 149 QERFHHYKDFWMLDLKTNQWEQLNL 173 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (685)
-+.++++|+.++.-..+..
T Consensus 129 ------~~~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 129 ------QNNIYLKQRPGDPPFQITF 147 (719)
T ss_dssp ------TTEEEEESSTTSCCEECCC
T ss_pred ------CCeEEEEeCCCCCcEEEec
Confidence 1478899988887766654
No 275
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=75.31 E-value=0.93 Score=47.73 Aligned_cols=52 Identities=8% Similarity=0.019 Sum_probs=24.8
Q ss_pred CeEEEEECCCCc--EEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCC--ceE
Q 005655 156 KDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQ 222 (685)
Q Consensus 156 ~dv~~yD~~t~~--W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~ 222 (685)
..++.||..+++ |+.-. +. .. .+.++.++.+|+.|+.. ..|++||..+. .|.
T Consensus 19 g~v~a~d~~tG~~~W~~~~--~~--~~--s~p~~~~g~~~v~~s~d---------g~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 19 GSLHAVSKRTGSIKWTLKE--DP--VL--QVPTHVEEPAFLPDPND---------GSLYTLGSKNNEGLTK 74 (369)
T ss_dssp SEEEEEETTTCCEEEEEEC--CC--SC--CCC-----CCEEECTTT---------CCEEEC-----CCSEE
T ss_pred CEEEEEECCCCCEEEEecC--CC--ce--ecceEcCCCEEEEeCCC---------CEEEEEECCCCceeee
Confidence 458899988774 77543 11 11 12234566777776532 35888998654 454
No 276
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=75.12 E-value=82 Score=35.30 Aligned_cols=112 Identities=8% Similarity=0.031 Sum_probs=53.1
Q ss_pred ccEEEEEcCCCc---EEEecCCCC-CCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEE----CCCCcEEE
Q 005655 101 GDLYRYDVEKQE---WKVISSPNS-PPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLD----LKTNQWEQ 170 (685)
Q Consensus 101 ndv~~yd~~~~~---W~~l~s~~~-P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD----~~t~~W~~ 170 (685)
..++++|+.+.. |..+..+.. .........+.+ ++++++.... ... ....+|++| +.++.+..
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~-~~~------~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK-RVQ------NVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE-SST------TEEEEEEEEECSSSSSEECCG
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec-ccc------CeEEEEEEcccCCCCCCceEE
Confidence 378899988875 234432100 001111122233 4666555221 111 125799999 87776655
Q ss_pred ccc---CCCCCCCcc---ceEEEE--CC-EEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 171 LNL---KGCPSPRSG---HRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 171 ~~~---~g~P~~Rsg---h~~v~~--~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
+.. .+ ...... +....+ ++ .|++.....+. ...||.+|+.+.....+..
T Consensus 297 ~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g------~~~l~~~~~~~~~~~~lt~ 354 (719)
T 1z68_A 297 TQEHIEES-RTGWAGGFFVSTPVFSYDAISYYKIFSDKDG------YKHIHYIKDTVENAIQITS 354 (719)
T ss_dssp GGEEEEEC-SSSCSSSSSCCCCEECTTSSCEEEEEECTTS------CEEEEEESSCSTTCEECSC
T ss_pred EEeccccc-CCceEccccCCccEECCCCCeEEEEEEccCC------ceEEEEEECCCCceEeccc
Confidence 441 11 111111 112223 33 45543332111 3579999998887666553
No 277
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=73.91 E-value=1.4e+02 Score=34.69 Aligned_cols=174 Identities=9% Similarity=0.089 Sum_probs=89.9
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCC----cEEEcccCC
Q 005655 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN----QWEQLNLKG 175 (685)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~----~W~~~~~~g 175 (685)
.+..+++....+..+... .+...++++. .+.||+.-.. .+.|+++++... ....+...+
T Consensus 405 ~Ir~i~l~~~~~~~l~~~----~~~~~gl~~d~~~~~lY~sD~~-----------~~~I~~~~l~g~~~~~~~~~vi~~~ 469 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPN----LRNVVALDTEVASNRIYWSDLS-----------QRMICSTQLDRAHGVSSYDTVISRD 469 (791)
T ss_dssp SEEEECTTSCCCEEEECS----CSSEEEEEEETTTTEEEEEETT-----------TTEEEEEEC--------CEEEECSS
T ss_pred ceeEeeccCCcceeeecC----CCceEEEeecccCCeeEEeecc-----------ceeEEEEeccCCCCCcceeEEEecC
Confidence 455666666666555331 2333444444 5789987542 245778887642 333333222
Q ss_pred CCCCCccceEEE--ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEE
Q 005655 176 CPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLY 251 (685)
Q Consensus 176 ~P~~Rsgh~~v~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~ 251 (685)
+..| .++++ .++.||+.-.. .+.|+++++....-..+... .+..|+ ++++. .+.||+.
T Consensus 470 l~~P---~GLAvD~~~~~LY~tD~~---------~~~I~v~~ldG~~~~~l~~~---~l~~P~---gIaVDp~~g~LYwt 531 (791)
T 3m0c_C 470 IQAP---DGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFRE---NGSKPR---AIVVDPVHGFMYWT 531 (791)
T ss_dssp CSCC---CEEEEETTTTEEEEEETT---------TTEEEEEETTSSSEEEEEEC---TTCCEE---EEEEETTTTEEEEE
T ss_pred CCCc---ceeeeeecCCcEEEEecC---------CCeEEEEeCCCCeEEEEEeC---CCCCcc---eEEEecCCCCEEEe
Confidence 2222 22333 26789987432 45789999876655544322 112222 34443 6888887
Q ss_pred ecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccCCcccccccc
Q 005655 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLF 329 (685)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~ 329 (685)
--.. ...|+++++....-..+...+. ..-.++++- +++||+.-..
T Consensus 532 D~g~---------------~~~I~~~~~dG~~~~~lv~~~l----~~P~GLavD~~~~~LYwaD~~-------------- 578 (791)
T 3m0c_C 532 DWGT---------------PAKIKKGGLNGVDIYSLVTENI----QWPNGITLDLLSGRLYWVDSK-------------- 578 (791)
T ss_dssp ECSS---------------SCEEEEEETTSCCEEEEECSSC----SCEEEEEEETTTTEEEEEETT--------------
T ss_pred cCCC---------------CCeEEEEecCCCceEEEEeCCC----CCceEEEEecCCCeEEEEeCC--------------
Confidence 4211 1247788876554444332211 112234443 7889987432
Q ss_pred CCcEEEEECCCC
Q 005655 330 LNELYGFQLDNH 341 (685)
Q Consensus 330 ~ndl~~yd~~t~ 341 (685)
.+.|+++++...
T Consensus 579 ~~~I~~~d~dG~ 590 (791)
T 3m0c_C 579 LHSISSIDVNGG 590 (791)
T ss_dssp TTEEEEEETTSC
T ss_pred CCcEEEEecCCC
Confidence 356888887643
No 278
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=73.27 E-value=89 Score=32.25 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=76.1
Q ss_pred ccEEEEEcCCCcEEEecCCC----CCCCcceeEEEEE----CCEEEEEc---CccCCCCCccccccCeEEEEECC---CC
Q 005655 101 GDLYRYDVEKQEWKVISSPN----SPPPRSAHQAVSW----KNYLYIFG---GEFTSPNQERFHHYKDFWMLDLK---TN 166 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~----~P~~R~~ha~v~~----~~~iyvfG---G~~~s~~~~~~~~~~dv~~yD~~---t~ 166 (685)
..|+.|++..+.-..+..+. ........++.+. .+.|||+. .-+....+ ...-.+.+.+||+. |+
T Consensus 35 g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~-~~~g~~~v~~~Dl~~~~tg 113 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ-SSHGASSFHSFNLPLSENS 113 (334)
T ss_dssp TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC-CSSSCCEEEEEESSCCTTC
T ss_pred CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc-ccCCCCEEEEEcCCcCCCC
Confidence 46889999866544442221 1111222344441 47888862 22222111 01124679999988 44
Q ss_pred --cEEEcccCCCCC-----C-Cc-cceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc---eEEeccCCCCCC
Q 005655 167 --QWEQLNLKGCPS-----P-RS-GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPRFGSMW 232 (685)
Q Consensus 167 --~W~~~~~~g~P~-----~-Rs-gh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~~~~~~ 232 (685)
.|..--..-... + +. +..-+++ .+.+||.+-+. ...|+++++.... |-.-.+.
T Consensus 114 ~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~--------~~~I~rV~pdG~~~~~~~~~~~~----- 180 (334)
T 2p9w_A 114 KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG--------MPAIARVSADGKTVSTFAWESGN----- 180 (334)
T ss_dssp CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES--------SCEEEEECTTSCCEEEEEECCCC-----
T ss_pred CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC--------CCeEEEEeCCCCEEeeeeecCCC-----
Confidence 454321000000 0 22 2222333 67999976642 1568999987542 4322211
Q ss_pred CCCccceeE-EEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCce
Q 005655 233 PSPRSGFQF-FVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (685)
Q Consensus 233 P~~Rs~~s~-~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (685)
+..+.|..- ++. +..|++..+ .+. ++.||+.+..
T Consensus 181 ~~~~~G~nGIv~~pdg~~Liv~~~-~g~----------------L~~fD~~~pv 217 (334)
T 2p9w_A 181 GGQRPGYSGITFDPHSNKLIAFGG-PRA----------------LTAFDVSKPY 217 (334)
T ss_dssp SSSCCSCSEEEEETTTTEEEEESS-SSS----------------EEEEECSSSS
T ss_pred cccccCcceEEEeCCCCEEEEEcC-CCe----------------EEEEcCCCCc
Confidence 233555444 444 556777766 544 8899987543
No 279
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=73.04 E-value=67 Score=30.98 Aligned_cols=59 Identities=22% Similarity=0.496 Sum_probs=35.9
Q ss_pred ECCEEEEEcCccCCCCCccccccCeEEEEECCCCcE--EEccc--CCCCCCCccceEEEECCEEEEEccccCCCCceeee
Q 005655 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW--EQLNL--KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYY 208 (685)
Q Consensus 133 ~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W--~~~~~--~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~ 208 (685)
.++.+|+|=| +.+|+|+.....+ ..|.. .++|. .. -++..+++++|+|-|
T Consensus 27 ~~g~~yfFkg-------------~~~Wr~~~~~~~~~p~~Is~~wpgLP~-~I-DAA~~~~~~~yfFkG----------- 80 (219)
T 1hxn_A 27 NHGATYVFSG-------------SHYWRLDTNRDGWHSWPIAHQWPQGPS-TV-DAAFSWEDKLYLIQD----------- 80 (219)
T ss_dssp TTSCEEEEET-------------TEEEESSSSSCTTCCEEGGGTCTTSCS-SC-SEEEEETTEEEEEET-----------
T ss_pred CCCcEEEEeC-------------CEEEEEcCCCCCCCceEhhhhccCCCC-Cc-cEEEEECCcEEEecC-----------
Confidence 3688999977 3577777543322 22222 13342 22 244556899999977
Q ss_pred ceEEEEEcC
Q 005655 209 NDLYVFDLD 217 (685)
Q Consensus 209 ~dv~~yD~~ 217 (685)
+.+|+|+..
T Consensus 81 ~~yw~~~~~ 89 (219)
T 1hxn_A 81 TKVYVFLTK 89 (219)
T ss_dssp TEEEEEECS
T ss_pred CEEEEEeCC
Confidence 457888864
No 280
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=72.75 E-value=22 Score=34.67 Aligned_cols=59 Identities=15% Similarity=0.318 Sum_probs=40.0
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccC----CCCC------CCccceEEEE--CCEEEEEccccCC
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK----GCPS------PRSGHRMVLY--KHKIIVFGGFYDT 201 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~----g~P~------~Rsgh~~v~~--~~~lyv~GG~~~~ 201 (685)
++++|+|-| +.+|+||..+++...- +. +.|. +..-.+++.+ ++++|+|-|
T Consensus 127 ~gk~yfFkG-------------~~yw~~d~~~~~~~~g-Pk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG---- 188 (225)
T 3oyo_A 127 GKEVYLFKG-------------NKYVRIAYDSKQLVGN-IRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG---- 188 (225)
T ss_dssp TTEEEEEET-------------TEEEEEETTTTEEEEE-EEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET----
T ss_pred CCcEEEEeC-------------CeEEEEECCCCeecCC-CcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC----
Confidence 689999988 5689999877765542 11 1222 3333455554 789999988
Q ss_pred CCceeeeceEEEEEcC
Q 005655 202 LREVRYYNDLYVFDLD 217 (685)
Q Consensus 202 ~~~~~~~~dv~~yD~~ 217 (685)
+..|+||..
T Consensus 189 -------~~ywr~d~~ 197 (225)
T 3oyo_A 189 -------QNYVRIDFT 197 (225)
T ss_dssp -------TEEEEEECC
T ss_pred -------CEEEEEeCC
Confidence 467999987
No 281
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=72.57 E-value=1.2e+02 Score=33.40 Aligned_cols=160 Identities=10% Similarity=0.013 Sum_probs=79.6
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEec-CCCC---CCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNS---PPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s~~~---P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
++.+.| ++.+++.||. + +.+.+||+.+.+....- .... .....-.+++.. ++.+++.||.+
T Consensus 195 ~v~fsp--dg~~las~s~--D-------~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D--- 260 (611)
T 1nr0_A 195 SVRYNP--DGSLFASTGG--D-------GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD--- 260 (611)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT---
T ss_pred EEEECC--CCCEEEEEEC--C-------CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC---
Confidence 344444 4555555552 2 35778888776554321 1100 001111122222 46677777643
Q ss_pred CCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccC
Q 005655 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (685)
+.+.++|+.+......-..+ .........+.+.+..++.++.+ ..+.+||+.+..-...-..
T Consensus 261 --------~~v~lWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s~d---------~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 261 --------KTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIWTKQALVSISAN---------GFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp --------SEEEEEETTTTEEEEEEECC-SSGGGCEEEEEECSSCEEEEETT---------CCEEEEETTTTEEEEEECC
T ss_pred --------CeEEEEeCCCCceeeeecCC-CCccceeEEEEEcCCEEEEEeCC---------CcEEEEeCCCCCcceEEcC
Confidence 45888999888765432211 11112223344566666666643 3466778776542222111
Q ss_pred CCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE
Q 005655 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (685)
. ...-.+++.. ++..++.|+.++. +.++|+.+.....
T Consensus 323 -----h-~~~v~~l~~spdg~~l~s~s~D~~----------------v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 323 -----H-NKAITALSSSADGKTLFSADAEGH----------------INSWDISTGISNR 360 (611)
T ss_dssp -----C-SSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEE
T ss_pred -----C-CCCEEEEEEeCCCCEEEEEeCCCc----------------EEEEECCCCceee
Confidence 0 1111122222 6677778877665 6778887765544
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=72.53 E-value=90 Score=35.76 Aligned_cols=98 Identities=9% Similarity=0.083 Sum_probs=55.1
Q ss_pred eccEEEEEcCCC--cE--EEecCCCCCCCcceeEEE-EECCEEEEEcCccCCCCCccccccCeEEEEECCC-CcEEE-cc
Q 005655 100 YGDLYRYDVEKQ--EW--KVISSPNSPPPRSAHQAV-SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-NQWEQ-LN 172 (685)
Q Consensus 100 ~ndv~~yd~~~~--~W--~~l~s~~~P~~R~~ha~v-~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t-~~W~~-~~ 172 (685)
.+++|++|+.+. .+ +.+.... ..+ .++.. ..++.||+..-.... ....++++++.+ ..|+. +-
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~-~~~--~~s~~~~~g~~l~~~t~~~~a-------~~~~L~~~d~~~~~~~~~~li 363 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE-KGV--RYDVQMHGTSHLVILTNEGGA-------VNHKLLIAPRGQPSDWSHVLV 363 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC-TTC--CEEEEEETTTEEEEEECTTTC-------TTCEEEEEETTSTTCCCCEEE
T ss_pred CceEEEEECCCCCCCceeEEeecCC-CCc--eEEEeeeeCCEEEEEeCCCCC-------CCcEEEEEcCCCcccceeeEE
Confidence 358999999875 56 6664322 111 12222 237788887654311 124789999886 67876 43
Q ss_pred cCCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEc
Q 005655 173 LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (685)
Q Consensus 173 ~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (685)
+. .....-......++.||+..-..+ ...++++|+
T Consensus 364 ~~--~~~~~l~~~~~~~~~lv~~~~~~g-------~~~l~~~dl 398 (751)
T 2xe4_A 364 DH--SEDVFMESIAVRSNYLVVAGRRAG-------LTRIWTMMA 398 (751)
T ss_dssp CC--CSSEEEEEEEECSSEEEEEEEETT-------EEEEEEEEC
T ss_pred CC--CCCcEEEEEEEECCEEEEEEEeCC-------EEEEEEEec
Confidence 31 111121223344677777654332 467899986
No 283
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=72.32 E-value=87 Score=31.73 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=11.3
Q ss_pred ccEEEEEcC-CCcEEEe
Q 005655 101 GDLYRYDVE-KQEWKVI 116 (685)
Q Consensus 101 ndv~~yd~~-~~~W~~l 116 (685)
+.+++|++. +++...+
T Consensus 167 ~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 167 NKLWTHRKLASGEVELV 183 (365)
T ss_dssp TEEEEEEECTTSCEEEE
T ss_pred CEEEEEEECCCCCEEEe
Confidence 468899988 6766543
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=71.43 E-value=94 Score=35.63 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=54.5
Q ss_pred cCeEEEEECCCC--cE--EEcccCCCCCCCccceEE-EECCEEEEEccccCCCCceeeeceEEEEEcCC-CceEE-eccC
Q 005655 155 YKDFWMLDLKTN--QW--EQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQE-IKPR 227 (685)
Q Consensus 155 ~~dv~~yD~~t~--~W--~~~~~~g~P~~Rsgh~~v-~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~-v~~~ 227 (685)
.+++|++|+.+. .+ ..+.... ..+. +... ..++.||+..-.... ....|+.+|+.+ ..|.. +-+.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~--~s~~~~~g~~l~~~t~~~~a-----~~~~L~~~d~~~~~~~~~~li~~ 365 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE-KGVR--YDVQMHGTSHLVILTNEGGA-----VNHKLLIAPRGQPSDWSHVLVDH 365 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC-TTCC--EEEEEETTTEEEEEECTTTC-----TTCEEEEEETTSTTCCCCEEECC
T ss_pred CceEEEEECCCCCCCceeEEeecCC-CCce--EEEeeeeCCEEEEEeCCCCC-----CCcEEEEEcCCCcccceeeEECC
Confidence 368999999875 46 6554311 1111 1111 237788887654311 135789999876 67876 4332
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeC
Q 005655 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (685)
Q Consensus 228 ~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (685)
.....-..+...++.||+..-..+ ...++++++
T Consensus 366 -----~~~~~l~~~~~~~~~lv~~~~~~g--------------~~~l~~~dl 398 (751)
T 2xe4_A 366 -----SEDVFMESIAVRSNYLVVAGRRAG--------------LTRIWTMMA 398 (751)
T ss_dssp -----CSSEEEEEEEECSSEEEEEEEETT--------------EEEEEEEEC
T ss_pred -----CCCcEEEEEEEECCEEEEEEEeCC--------------EEEEEEEec
Confidence 111122334445777777654432 345888886
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=71.13 E-value=32 Score=39.41 Aligned_cols=149 Identities=9% Similarity=0.009 Sum_probs=78.0
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEE--ECCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~--~~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++.||+.-.. .+.|+++++....-..+...++..|+ .+++ .+++||+.--. ....|
T Consensus 464 ~g~LY~tD~~-----------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~--------~~~~I 521 (699)
T 1n7d_A 464 HSNIYWTDSV-----------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG--------TPAKI 521 (699)
T ss_dssp SSBCEECCTT-----------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS--------SSCCE
T ss_pred CCcEEEEecc-----------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC--------CCCeE
Confidence 5788886321 25688999887655554432222222 2333 25677765310 02467
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeec
Q 005655 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (685)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 289 (685)
+++++....-..+... .+..| .++++. ++.||+.-... ..|+++++....-..+..
T Consensus 522 ~~~~~dG~~~~~l~~~---~l~~P---nGlavd~~~~~LY~aD~~~----------------~~I~~~d~dG~~~~~~~~ 579 (699)
T 1n7d_A 522 KKGGLNGVDIYSLVTE---NIQWP---NGITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILE 579 (699)
T ss_dssp EBCCSSSCCCCEESCS---SCSSC---CCEEECTTTCCEEEEETTT----------------TEEEEECSSSSCCEEECC
T ss_pred EEEeCCCCCeeEEEeC---CCCCc---cEEEEeccCCEEEEEecCC----------------CeEEEEccCCCceEEEEe
Confidence 7777654333322211 01111 123332 67888875432 237788876543333322
Q ss_pred CCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 290 ~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
.. ......+++++..++||+.-.. .+.|++||+.+.+
T Consensus 580 ~~--~~~~~P~glavd~~~lywtd~~--------------~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 580 DE--KRLAHPFSLAVFEDKVFWTDII--------------NEAIFSANRLTGS 616 (699)
T ss_dssp CS--SSCSSCCCCEEETTEEEEECST--------------TTCEEEEETTTEE
T ss_pred cC--CcCCCceEeEEECCEEEEEeCC--------------CCeEEEEEccCCC
Confidence 10 1112235667788888887632 3569999986654
No 286
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=71.12 E-value=1.1e+02 Score=32.18 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=52.7
Q ss_pred cEEEEEcCCCc-EEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCC-C
Q 005655 102 DLYRYDVEKQE-WKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-P 177 (685)
Q Consensus 102 dv~~yd~~~~~-W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P 177 (685)
.+++|++.... ...+.....+....-+++++. ++.||+..+ ...+++||+.+.....+...+. .
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~------------~~~I~~~d~~~~~~~~~~~~~~~g 262 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS------------NKNFGRFNVKTQEVTLIKQLELSG 262 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT------------TCEEEEEETTTCCEEEEEECCCCS
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC------------CCcEEEEECCCCCEEEEecccccC
Confidence 68888887543 233311111011222344444 588998432 1469999999887665522111 1
Q ss_pred CCCcc--ceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 178 SPRSG--HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 178 ~~Rsg--h~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
..... +.+++. ++.||+.... .+.|++|++...
T Consensus 263 ~~~~~P~~~ia~~p~~g~lyv~d~~---------~~~I~~~~~~g~ 299 (409)
T 3hrp_A 263 SLGTNPGPYLIYYFVDSNFYMSDQN---------LSSVYKITPDGE 299 (409)
T ss_dssp CCCCSSCCEEEEETTTTEEEEEETT---------TTEEEEECTTCC
T ss_pred CCCCCccccEEEeCCCCEEEEEeCC---------CCEEEEEecCCC
Confidence 12222 145554 5789987432 357889987654
No 287
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=69.94 E-value=3.2 Score=40.78 Aligned_cols=61 Identities=13% Similarity=0.301 Sum_probs=38.6
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEE-----EcccCCCCCC------CccceEEEE--CCEEEEEccccC
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-----QLNLKGCPSP------RSGHRMVLY--KHKIIVFGGFYD 200 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~-----~~~~~g~P~~------Rsgh~~v~~--~~~lyv~GG~~~ 200 (685)
++++|+|-| +.+|+||..+++-. .+. .+.|.. ..-.+++.+ ++++|+|-|
T Consensus 129 ~~k~yfFkG-------------~~yw~~d~~~~~~~~gyPk~i~-~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg--- 191 (227)
T 3lp9_A 129 GKEVYLFKG-------------DQYARIDYGSNSMVNKEIKSIS-SGYPCFRNTIFESGADAAFASHKTNEVYFFKD--- 191 (227)
T ss_dssp TTEEEEEET-------------TEEEEEETTTTEESSSSCEEHH-HHCGGGTTSGGGGCCSEEEECSSTTEEEEEET---
T ss_pred CCEEEEEEC-------------CEEEEEeCCCccccCCCCeEHH-HCCCCccccccCCCccEEEEcCCCceEEEEEC---
Confidence 589999988 56999998765321 111 112321 222344443 589999987
Q ss_pred CCCceeeeceEEEEEcCCC
Q 005655 201 TLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~ 219 (685)
+..|+||..+.
T Consensus 192 --------~~Ywr~d~~~~ 202 (227)
T 3lp9_A 192 --------DHYARVKVTPX 202 (227)
T ss_dssp --------TEEEEEECCSS
T ss_pred --------CEEEEEECCcc
Confidence 45789998765
No 288
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=68.16 E-value=1.2e+02 Score=31.53 Aligned_cols=174 Identities=9% Similarity=0.020 Sum_probs=96.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
+.++++++.......+... .....++++. ++.||+.--. .+.++++++.....+.+...++..
T Consensus 96 ~~I~~i~~~~~~~~~~~~~----~~~~~gl~~d~~~~~ly~~D~~-----------~~~I~r~~~~g~~~~~~~~~~~~~ 160 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN----LENAIALDFHHRRELVFWSDVT-----------LDRILRANLNGSNVEEVVSTGLES 160 (386)
T ss_dssp SCEEEECTTSCCCEEEECS----CSCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTSCCEEEEECSSCSC
T ss_pred ccceeeccCCCcEEEEecC----CCccEEEEEecCCCeEEEEeCC-----------CCcEEEEecCCCCcEEEEeCCCCC
Confidence 4678888887766655432 2223445544 5889987432 257999999988776665433322
Q ss_pred CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecc
Q 005655 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (685)
Q Consensus 179 ~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~ 254 (685)
| .++++- ++.||+.-.. .+.|+++++....-..+... .+..| ..+++. ++.||+.-..
T Consensus 161 p---~glavd~~~g~lY~~d~~---------~~~I~~~~~dg~~~~~l~~~---~l~~P---~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 161 P---GGLAVDWVHDKLYWTDSG---------TSRIEVANLDGAHRKVLLWQ---SLEKP---RAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp C---CCEEEETTTTEEEEEETT---------TTEEEECBTTSCSCEEEECS---SCSCE---EEEEEETTTTEEEEEECS
T ss_pred c---cEEEEEeCCCeEEEEcCC---------CCeEEEEeCCCCceEEeecC---CCCCC---cEEEEEcCCCeEEEeccC
Confidence 2 223333 6889887432 34678888765443333221 11222 233333 6788876422
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE--ECCeEEEecceecccCCccccccccCCc
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV--HKKRALLFGGVVDMEMKGDVIMSLFLNE 332 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~--~~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (685)
. ...++++++....-..+...+ ...-.++++ .+++||+.-.. .+.
T Consensus 223 ~---------------~~~I~r~~~dG~~~~~~~~~~----~~~PnGlavd~~~~~lY~aD~~--------------~~~ 269 (386)
T 3v65_B 223 N---------------TPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAK--------------HHV 269 (386)
T ss_dssp S---------------SCEEEEEETTSCSCEEEECSS----CSCEEEEEEEGGGTEEEEEETT--------------TTE
T ss_pred C---------------CCEEEEEeCCCCCcEEEEECC----CCCeeeEEEeCCCCEEEEEECC--------------CCE
Confidence 1 134888887654433333211 111234444 37888887432 355
Q ss_pred EEEEECCC
Q 005655 333 LYGFQLDN 340 (685)
Q Consensus 333 l~~yd~~t 340 (685)
|++||+..
T Consensus 270 I~~~d~dG 277 (386)
T 3v65_B 270 IERANLDG 277 (386)
T ss_dssp EEEECTTS
T ss_pred EEEEeCCC
Confidence 88888754
No 289
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=68.06 E-value=1.1e+02 Score=31.20 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=66.2
Q ss_pred EEEcCCCcEEEecCCCCCCCcceeEEEEEC-CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccc
Q 005655 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGH 183 (685)
Q Consensus 105 ~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh 183 (685)
+|+. . |..-.....+.++++.+++... +.|-||-... -+.++.+-.....|..........+++..
T Consensus 148 ~~~g--~-W~~~~~lg~~~~gT~laa~s~~~~~i~vf~q~~----------dn~i~~~~~d~~~W~~~~~~~~~~p~s~l 214 (312)
T 1ofz_A 148 VWSG--K-WTAGASFGSTAPGTGIGATAIGPGRLRIYYQAT----------DNKIREHCWDSNSWYVGGFSASASAGVSI 214 (312)
T ss_dssp EESS--S-EEEEEEEEEESTTCCEEEEEEETTEEEEEEEBT----------TSEEEEEEESSSCEEEEEEEEECCTTCEE
T ss_pred EccC--C-cccCCCcCCccCCCCcceeecCCCCEEEEEEcC----------CCcEEEEEecCCcceECCEecCcCCCCCc
Confidence 4553 4 9855543334677777777764 7777774321 13454222233569765542235678888
Q ss_pred eEEEEC-C-EEEEEccccCCCCceeeeceEEEEEcCCCceE---EeccCCCCCCCCCccceeEEEeCC-EEEEE
Q 005655 184 RMVLYK-H-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ---EIKPRFGSMWPSPRSGFQFFVYQD-EVFLY 251 (685)
Q Consensus 184 ~~v~~~-~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~---~v~~~~~~~~P~~Rs~~s~~~~~~-~Iyv~ 251 (685)
+++.++ + +|-||---. .+.|+.+--. ..|+ .|..-..-....+++..+++..++ .|.||
T Consensus 215 Aavs~~~~~~i~lf~~~~--------~n~i~~~~~~-~~W~~~~~~~d~~~~~~~~~~s~~aa~s~~~~~i~lf 279 (312)
T 1ofz_A 215 AAISWGSTPNIRVYWQKG--------REELYEAAYG-GSWNTPGQIKDASRPTPSLPDTFIAANSSGNIDISVF 279 (312)
T ss_dssp EEEEETTTTEEEEEEECT--------TSCEEEEEES-SSBCCCEEECCTTSCSCBCTTCCCEEEEETTTEEEEE
T ss_pred EEEEeCCCCEEEEEEECC--------CCcEEEEEec-CCccccccccCcccccCcCCCCceEEEecCCCeEEEE
Confidence 888875 4 666653211 1345444333 4587 332221111234666666666643 55555
No 290
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=65.87 E-value=1.3e+02 Score=31.19 Aligned_cols=176 Identities=9% Similarity=-0.021 Sum_probs=94.8
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
+.|+++++.......+.......| ..+++. ++.||+.-.. .+.++++++....-..+...++..
T Consensus 138 ~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~lY~~d~~-----------~~~I~~~~~dg~~~~~l~~~~l~~ 203 (386)
T 3v65_B 138 DRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG-----------TSRIEVANLDGAHRKVLLWQSLEK 203 (386)
T ss_dssp TEEEEEETTSCCEEEEECSSCSCC---CCEEEETTTTEEEEEETT-----------TTEEEECBTTSCSCEEEECSSCSC
T ss_pred CcEEEEecCCCCcEEEEeCCCCCc---cEEEEEeCCCeEEEEcCC-----------CCeEEEEeCCCCceEEeecCCCCC
Confidence 357888888776665533221122 233333 6889987542 246888888765544443322222
Q ss_pred CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEE--eCCEEEEEecc
Q 005655 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLYGGY 254 (685)
Q Consensus 179 ~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~--~~~~Iyv~GG~ 254 (685)
| ..+++. ++.||+.--.. ...|+++++....-..+.... +. .-.++++ .++.||+.-..
T Consensus 204 P---~giavdp~~g~ly~td~~~--------~~~I~r~~~dG~~~~~~~~~~---~~---~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 204 P---RAIALHPMEGTIYWTDWGN--------TPRIEASSMDGSGRRIIADTH---LF---WPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp E---EEEEEETTTTEEEEEECSS--------SCEEEEEETTSCSCEEEECSS---CS---CEEEEEEEGGGTEEEEEETT
T ss_pred C---cEEEEEcCCCeEEEeccCC--------CCEEEEEeCCCCCcEEEEECC---CC---CeeeEEEeCCCCEEEEEECC
Confidence 2 233443 67888763210 257899998764433332210 01 1123333 37889988543
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEE
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
. ..|+++++....-..+...+ ...-.++++..+.||+..-. .+.|+
T Consensus 267 ~----------------~~I~~~d~dG~~~~~~~~~~----~~~P~giav~~~~ly~td~~--------------~~~V~ 312 (386)
T 3v65_B 267 H----------------HVIERANLDGSHRKAVISQG----LPHPFAITVFEDSLYWTDWH--------------TKSIN 312 (386)
T ss_dssp T----------------TEEEEECTTSCSCEEEECSS----CSSEEEEEEETTEEEEEETT--------------TTEEE
T ss_pred C----------------CEEEEEeCCCCeeEEEEECC----CCCceEEEEECCEEEEeeCC--------------CCeEE
Confidence 3 24888887643322222211 11235677788899987532 35588
Q ss_pred EEECCCC
Q 005655 335 GFQLDNH 341 (685)
Q Consensus 335 ~yd~~t~ 341 (685)
++|..+.
T Consensus 313 ~~~~~~G 319 (386)
T 3v65_B 313 SANKFTG 319 (386)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 8885443
No 291
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=65.76 E-value=1.5e+02 Score=31.96 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=57.5
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC----cEEEecCC-----CCCCCcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ----EWKVISSP-----NSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~----~W~~l~s~-----~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
..+|||-|. ..+.+|+||..++ +-.++-.+ ..-..| -|.+... ++ |||..--.....
T Consensus 95 r~~l~v~~l---------~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~-Ph~~~~~pdG-i~Vs~~g~~~g~-- 161 (462)
T 2ece_A 95 RRFLIVPGL---------RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSR-LHTVHCGPDA-IYISALGNEEGE-- 161 (462)
T ss_dssp SCEEEEEBT---------TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEE-EEEEEECSSC-EEEEEEEETTSC--
T ss_pred CCEEEEccC---------CCCeEEEEECCCCCCCceeeeeechhhcccccCCCc-ccceeECCCe-EEEEcCCCcCCC--
Confidence 356666665 2368999998876 33332210 000112 2443333 45 777432221111
Q ss_pred cccccCeEEEEECCCCcEE-EcccCCCCCCCccceEEE-E-CCEEEEE--c-------cccCCCCceeeeceEEEEEcCC
Q 005655 151 RFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVL-Y-KHKIIVF--G-------GFYDTLREVRYYNDLYVFDLDQ 218 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rsgh~~v~-~-~~~lyv~--G-------G~~~~~~~~~~~~dv~~yD~~t 218 (685)
.-+.+.++|..|..-. .++..+.|... +....+ - .+.+|+- | |+........+.+.|.+||+.+
T Consensus 162 ---~~g~v~vlD~~T~~v~~~~~~~~~~~~~-~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 162 ---GPGGILMLDHYSFEPLGKWEIDRGDQYL-AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp ---SCCEEEEECTTTCCEEEECCSBCTTCCC-CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred ---CCCeEEEEECCCCeEEEEEccCCCCccc-cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 2368999999987533 22221122111 111111 1 3444443 1 2221110013578999999987
Q ss_pred C
Q 005655 219 F 219 (685)
Q Consensus 219 ~ 219 (685)
.
T Consensus 238 ~ 238 (462)
T 2ece_A 238 R 238 (462)
T ss_dssp T
T ss_pred C
Confidence 5
No 292
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=64.96 E-value=1.2e+02 Score=30.40 Aligned_cols=174 Identities=8% Similarity=0.067 Sum_probs=93.5
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCC----CcEEEcccC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQLNLK 174 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t----~~W~~~~~~ 174 (685)
+.+.++++.+.....+.. ....-+++++. ++.||+.... .+.++++++.+ .....+-..
T Consensus 10 ~~I~~i~~~~~~~~~~~~----~~~~p~g~~~d~~~~~ly~~D~~-----------~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLS-----------QRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp SSEEEEETTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETT-----------TTEEEEEEC--------CEEEECS
T ss_pred CeEEEEECCCcceEehhc----CCCceEEEEEEeCCCEEEEEECC-----------CCcEEEEECCCCCCCcccEEEEeC
Confidence 468889998887665532 22334555555 5789998642 25688999876 222332221
Q ss_pred CCCCCCccceEEE--ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEE
Q 005655 175 GCPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (685)
Q Consensus 175 g~P~~Rsgh~~v~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv 250 (685)
++..| +++++ .++.||+.-.. .+.|.++++....-..+... .+..| ..+++. ++.||+
T Consensus 75 ~~~~p---~glavd~~~~~ly~~d~~---------~~~I~~~~~~g~~~~~~~~~---~~~~P---~~iavdp~~g~ly~ 136 (316)
T 1ijq_A 75 DIQAP---DGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFRE---NGSKP---RAIVVDPVHGFMYW 136 (316)
T ss_dssp SCSCC---CEEEEETTTTEEEEEETT---------TTEEEEEETTSSSEEEEEEC---TTCCE---EEEEEETTTTEEEE
T ss_pred CCCCc---CEEEEeecCCeEEEEECC---------CCEEEEEeCCCCceEEEEEC---CCCCc---ceEEeCCCCCEEEE
Confidence 22222 34444 37889987432 35688888876443333221 11222 233333 788888
Q ss_pred EecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccCCccccccc
Q 005655 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSL 328 (685)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~ 328 (685)
..... ...++++++....-..+... ....-.++++- +++||+.-..
T Consensus 137 ~d~~~---------------~~~I~~~~~dG~~~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~------------- 184 (316)
T 1ijq_A 137 TDWGT---------------PAKIKKGGLNGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSK------------- 184 (316)
T ss_dssp EECSS---------------SCEEEEEETTSCCEEEEECS----SCSCEEEEEEETTTTEEEEEETT-------------
T ss_pred EccCC---------------CCeEEEEcCCCCCeEEEEEC----CCCCceEEEEeccCCEEEEEECC-------------
Confidence 75321 12478888765433333221 11222345554 6788887532
Q ss_pred cCCcEEEEECCC
Q 005655 329 FLNELYGFQLDN 340 (685)
Q Consensus 329 ~~ndl~~yd~~t 340 (685)
.+.|++||+..
T Consensus 185 -~~~I~~~d~dg 195 (316)
T 1ijq_A 185 -LHSISSIDVNG 195 (316)
T ss_dssp -TTEEEEEETTS
T ss_pred -CCeEEEEecCC
Confidence 35688888764
No 293
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=64.93 E-value=1.2e+02 Score=30.39 Aligned_cols=200 Identities=8% Similarity=0.014 Sum_probs=105.3
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCC----CcEEEecCCCCCCCcceeEEEE--ECCEEEEEcCc
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----QEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGE 143 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~----~~W~~l~s~~~P~~R~~ha~v~--~~~~iyvfGG~ 143 (685)
.-+++.+.+. ++.||+.... .+.++++++.. .....+.......| +.+++ .++.||+.-..
T Consensus 31 ~p~g~~~d~~-~~~ly~~D~~---------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glavd~~~~~ly~~d~~ 97 (316)
T 1ijq_A 31 NVVALDTEVA-SNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV 97 (316)
T ss_dssp SEEEEEEETT-TTEEEEEETT---------TTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEETT
T ss_pred ceEEEEEEeC-CCEEEEEECC---------CCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEEeecCCeEEEEECC
Confidence 3456666643 4788887651 24688898876 22222222111112 34444 36899987432
Q ss_pred cCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCce
Q 005655 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (685)
Q Consensus 144 ~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (685)
.+.+.++++....-..+....+..| ..+++. ++.||+..-. . ...|+++++....-
T Consensus 98 -----------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~-~-------~~~I~~~~~dG~~~ 155 (316)
T 1ijq_A 98 -----------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG-T-------PAKIKKGGLNGVDI 155 (316)
T ss_dssp -----------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS-S-------SCEEEEEETTSCCE
T ss_pred -----------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC-C-------CCeEEEEcCCCCCe
Confidence 2568899987654444332222222 234443 6788886421 0 25788998865433
Q ss_pred EEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcce
Q 005655 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (685)
Q Consensus 222 ~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g 299 (685)
..+... . -..-.++++. ++.||+.-... ..++++|+....-..+...+ .....-
T Consensus 156 ~~~~~~-----~-~~~P~gla~d~~~~~lY~~D~~~----------------~~I~~~d~dg~~~~~~~~~~--~~~~~P 211 (316)
T 1ijq_A 156 YSLVTE-----N-IQWPNGITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILEDE--KRLAHP 211 (316)
T ss_dssp EEEECS-----S-CSCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEEECT--TTTSSE
T ss_pred EEEEEC-----C-CCCceEEEEeccCCEEEEEECCC----------------CeEEEEecCCCceEEEeecC--CccCCc
Confidence 333221 1 1112234443 78899875433 24788887653323332211 112233
Q ss_pred eEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCCc
Q 005655 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (685)
Q Consensus 300 ~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (685)
+++++.++.||+.-.. .+.|+++|+.+.+
T Consensus 212 ~giav~~~~ly~~d~~--------------~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 212 FSLAVFEDKVFWTDII--------------NEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEETTEEEEEETT--------------TTEEEEEETTTCC
T ss_pred EEEEEECCEEEEEECC--------------CCeEEEEeCCCCc
Confidence 5677788999986532 3568999986654
No 294
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=64.72 E-value=2e+02 Score=32.98 Aligned_cols=184 Identities=15% Similarity=0.269 Sum_probs=90.8
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcC-CCcEEEecCCCC-C---CCcc-eeEEEEE---CCEEEEEc
Q 005655 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSPNS-P---PPRS-AHQAVSW---KNYLYIFG 141 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~-~~~W~~l~s~~~-P---~~R~-~ha~v~~---~~~iyvfG 141 (685)
-+++++.|.+.+.||+..|.+.... ....||+ ..+ -.+|+.+..+.. + ..|. .+.+++. .+.+|+.+
T Consensus 77 ~~~ia~dp~~~~~~~~~~g~~~~~~---~~~~i~~-S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~ 152 (763)
T 3a0f_A 77 TESIALDPHNPDRLYLAQGDYVQWD---PWAAFLV-SDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS 152 (763)
T ss_dssp EEEEECCTTCTTCEEEEECSCTTTC---SCCEEEE-ESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC
T ss_pred eeEEEECCCCCCEEEEEecccccCC---CCceEEE-ECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe
Confidence 4666667755578998776432210 1123433 333 458998864321 0 1232 2345554 36788754
Q ss_pred CccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCC---ccceEEEE----CCEEEEEccccCCCCceeeeceEEEE
Q 005655 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR---SGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 142 G~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R---sgh~~v~~----~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
.. ..+|+=.=.-.+|+.+.. +|..+ .+...+++ .+.||+.+...+ .|++=
T Consensus 153 ~~------------~~l~~S~DgG~TW~~~~~--~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g---------~v~~S 209 (763)
T 3a0f_A 153 RT------------QGLWRSTDRAQTWSRMNQ--LPDSSTYGIGIISVIFDPKNVGTAYVASHAVG---------GLWVT 209 (763)
T ss_dssp SS------------SCEEEESSTTSSCEECTT--SCCCSCTTTCEEEEEECSSSTTCEEEEESSTT---------CEEEE
T ss_pred CC------------CcEEEECCCCcCcccccc--CcccCCCccceEEEEECCCCCCEEEEEEeCCC---------eEEEE
Confidence 21 234432223458999874 44322 22223333 245766533110 12222
Q ss_pred EcCCCceEEeccCCCCC--------------CC-CCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEe
Q 005655 215 DLDQFKWQEIKPRFGSM--------------WP-SPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (685)
Q Consensus 215 D~~t~~W~~v~~~~~~~--------------~P-~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (685)
.=.-.+|+.+...+... .+ .++..+.+++. ++.||+.......+ .+.....+|+.+
T Consensus 210 ~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--------~~~~~g~v~rS~ 281 (763)
T 3a0f_A 210 WDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGP--------WGVLYGEVWSYD 281 (763)
T ss_dssp SSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSS--------SCCCCEEEEEEE
T ss_pred CCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCC--------CCCcceeEEEEe
Confidence 11235799887442110 00 23344444443 67788774321110 011245688888
Q ss_pred CCCceeEEeec
Q 005655 279 PRTWEWSKVKK 289 (685)
Q Consensus 279 ~~t~~W~~~~~ 289 (685)
-...+|+.+.+
T Consensus 282 D~G~tW~~~~~ 292 (763)
T 3a0f_A 282 PTNGNWKHITP 292 (763)
T ss_dssp TTTTEEEECCT
T ss_pred CCCCceEECCC
Confidence 88999999864
No 295
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=64.17 E-value=1.5e+02 Score=31.22 Aligned_cols=55 Identities=15% Similarity=-0.029 Sum_probs=34.8
Q ss_pred eeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CC--eEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK--RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 271 ~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~--~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
-+.+|++|+.+.+-...-.. +..-.++++- ++ ++|+.-+. .++|.+||..+++-.
T Consensus 310 ~~~V~viD~~t~kv~~~i~v-----g~~~~~lavs~D~~~~ly~tn~~--------------~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 310 SRFVVVLDAKTGERLAKFEM-----GHEIDSINVSQDEKPLLYALSTG--------------DKTLYIHDAESGEEL 367 (386)
T ss_dssp EEEEEEEETTTCCEEEEEEE-----EEEECEEEECSSSSCEEEEEETT--------------TTEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCeEEEEEEC-----CCCcceEEECCCCCeEEEEEcCC--------------CCeEEEEECCCCcEE
Confidence 46799999998876655432 2223355554 44 45654332 467999999988644
No 296
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=63.60 E-value=1.4e+02 Score=30.80 Aligned_cols=76 Identities=7% Similarity=-0.150 Sum_probs=40.4
Q ss_pred CCEEEEEccccCCCCceeeeceEEEEEcCCCce-EEeccCCCCCCCCCccceeEEEe-CCE-EEEEecccCCCCcccCCC
Q 005655 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQS 265 (685)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~Rs~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~ 265 (685)
+++||+..............+.|+++|+.+.+- ..++ .+...+++.+. +++ +++.+...
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~--------~g~~p~~i~~s~Dg~~~l~v~~~~---------- 339 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--------LGHDVDAISVAQDGGPDLYALSAG---------- 339 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE--------CCCCcCeEEECCCCCeEEEEEcCC----------
Confidence 578898754211110011347899999988754 3332 22233444444 444 33333321
Q ss_pred CCCceeeeEEEEeCCCceeEEe
Q 005655 266 EKGIIHSDLWSLDPRTWEWSKV 287 (685)
Q Consensus 266 ~~~~~~~dv~~yd~~t~~W~~~ 287 (685)
.+++.+||+.+.+-...
T Consensus 340 -----~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 340 -----TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred -----CCeEEEEECCCCCEEee
Confidence 13589999887665544
No 297
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=61.86 E-value=14 Score=36.20 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=36.4
Q ss_pred ECCEEEEEcCccCCCCCccccccCeEEEEEC--CCCcEE------Eccc--CCCCC---CCccceEEEE--CCEEEEEcc
Q 005655 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDL--KTNQWE------QLNL--KGCPS---PRSGHRMVLY--KHKIIVFGG 197 (685)
Q Consensus 133 ~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~--~t~~W~------~~~~--~g~P~---~Rsgh~~v~~--~~~lyv~GG 197 (685)
.++.+|+|-| +.+|+|+. .+.... .+.. .++|. +..--++..+ ++++|+|-|
T Consensus 71 ~~g~~~fFKg-------------~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG 137 (227)
T 3lp9_A 71 ENNEAFIFYE-------------NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG 137 (227)
T ss_dssp STTEEEEEET-------------TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET
T ss_pred CCCEEEEEeC-------------CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC
Confidence 4799999988 46899983 211111 1111 12331 2122233333 589999988
Q ss_pred ccCCCCceeeeceEEEEEcCCC
Q 005655 198 FYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 198 ~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
+..|+||..++
T Consensus 138 -----------~~yw~~d~~~~ 148 (227)
T 3lp9_A 138 -----------DQYARIDYGSN 148 (227)
T ss_dssp -----------TEEEEEETTTT
T ss_pred -----------CEEEEEeCCCc
Confidence 46899998654
No 298
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=60.94 E-value=1.5e+02 Score=30.21 Aligned_cols=171 Identities=13% Similarity=0.167 Sum_probs=89.2
Q ss_pred EEEEcCCCcEEEec--CCC-CCCCcceeEEEEEC------CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccC
Q 005655 104 YRYDVEKQEWKVIS--SPN-SPPPRSAHQAVSWK------NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK 174 (685)
Q Consensus 104 ~~yd~~~~~W~~l~--s~~-~P~~R~~ha~v~~~------~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~ 174 (685)
.+|+. ..|.... ... .+.+.+.-+++.++ ..|.||.=.... .-+.++.+-.... |..-...
T Consensus 90 ~~~~~--~~W~~g~L~~~~~~~~~~S~lAAvs~~~~~~~~~~i~Vf~q~~~~-------~dn~I~e~~~~g~-W~~~~~l 159 (312)
T 1ofz_A 90 FVYDG--SKWITGQLGSVGVKVGSNSKLAALQWGGSESAPPNIRVYYQKSNL-------SGSSIHEYVWSGK-WTAGASF 159 (312)
T ss_dssp EEEES--SCEEECGGGGGCCBCCTTCCCEEEEESCBTTBCCEEEEEECSCCS-------TTEEEEEEEESSS-EEEEEEE
T ss_pred EEecC--CCccccccCCcccccCCCCcceEEEecCCCCCCCeEEEEEEeccC-------CCCeEEEEEccCC-cccCCCc
Confidence 35665 6798744 211 24466677777764 377777320000 1134544333344 9877663
Q ss_pred CCCCCCccceEEEEC-CEEEEEccccCCCCceeeeceEE--EEEcCCCceEEeccCCCCCCCCCccceeEEEe-CC-EEE
Q 005655 175 GCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLY--VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVF 249 (685)
Q Consensus 175 g~P~~Rsgh~~v~~~-~~lyv~GG~~~~~~~~~~~~dv~--~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~-~Iy 249 (685)
+...++++.+++.+. ++|-||--.. -+.|+ +||. ..|........ ..|++..+++.. ++ .|-
T Consensus 160 g~~~~gT~laa~s~~~~~i~vf~q~~--------dn~i~~~~~d~--~~W~~~~~~~~---~~p~s~lAavs~~~~~~i~ 226 (312)
T 1ofz_A 160 GSTAPGTGIGATAIGPGRLRIYYQAT--------DNKIREHCWDS--NSWYVGGFSAS---ASAGVSIAAISWGSTPNIR 226 (312)
T ss_dssp EEESTTCCEEEEEEETTEEEEEEEBT--------TSEEEEEEESS--SCEEEEEEEEE---CCTTCEEEEEEETTTTEEE
T ss_pred CCccCCCCcceeecCCCCEEEEEEcC--------CCcEEEEEecC--CcceECCEecC---cCCCCCcEEEEeCCCCEEE
Confidence 335677888888775 7887774322 13443 4454 56876655311 456666677666 34 655
Q ss_pred EEecccCCCCcccCCCCCCceeeeEEEEeCCCceeE---EeecCC--CCCCCcceeEEEEECC-eEEEec
Q 005655 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS---KVKKIG--MPPGPRAGFSMCVHKK-RALLFG 313 (685)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~---~~~~~g--~~P~~R~g~s~~~~~~-~iyvfG 313 (685)
||=--... .+.. ..++ ..|. .+.... ..+.+++..+++..++ +|.||=
T Consensus 227 lf~~~~~n-----------~i~~--~~~~---~~W~~~~~~~d~~~~~~~~~~s~~aa~s~~~~~i~lf~ 280 (312)
T 1ofz_A 227 VYWQKGRE-----------ELYE--AAYG---GSWNTPGQIKDASRPTPSLPDTFIAANSSGNIDISVFF 280 (312)
T ss_dssp EEEECTTS-----------CEEE--EEES---SSBCCCEEECCTTSCSCBCTTCCCEEEEETTTEEEEEE
T ss_pred EEEECCCC-----------cEEE--EEec---CCccccccccCcccccCcCCCCceEEEecCCCeEEEEE
Confidence 55321111 1221 2344 3477 442211 1233666777777754 666663
No 299
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=58.52 E-value=1.8e+02 Score=30.49 Aligned_cols=59 Identities=7% Similarity=-0.011 Sum_probs=33.5
Q ss_pred CEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccc-eeEEEe-CCEEEEEecccCCCCcccCCCCC
Q 005655 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG-FQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (685)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~-~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (685)
+.+++.|+.+ ..|.+||+.+..-.. ... + .... .+++.. ++..++.|+.++.
T Consensus 162 ~~~las~s~D---------g~v~iwD~~~~~~~~-~~~-----~-~~~~v~~v~wspdg~~lasgs~dg~---------- 215 (434)
T 2oit_A 162 PSMVAVCLAD---------GSIAVLQVTETVKVC-ATL-----P-STVAVTSVCWSPKGKQLAVGKQNGT---------- 215 (434)
T ss_dssp TTEEEEEETT---------SCEEEEEESSSEEEE-EEE-----C-GGGCEEEEEECTTSSCEEEEETTSC----------
T ss_pred CCEEEEEECC---------CeEEEEEcCCCccee-ecc-----C-CCCceeEEEEcCCCCEEEEEcCCCc----------
Confidence 5677777753 358888887763211 111 1 1111 222222 6677777877655
Q ss_pred CceeeeEEEEeCC
Q 005655 268 GIIHSDLWSLDPR 280 (685)
Q Consensus 268 ~~~~~dv~~yd~~ 280 (685)
+.+||+.
T Consensus 216 ------v~iwd~~ 222 (434)
T 2oit_A 216 ------VVQYLPT 222 (434)
T ss_dssp ------EEEECTT
T ss_pred ------EEEEccC
Confidence 7788887
No 300
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=58.49 E-value=1.6e+02 Score=29.90 Aligned_cols=176 Identities=9% Similarity=-0.025 Sum_probs=95.2
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
+.++++++.......+.......| .++++- ++.||+.-.. .+.++++++....-..+...++..
T Consensus 95 ~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~ly~~d~~-----------~~~I~~~~~dG~~~~~l~~~~l~~ 160 (349)
T 3v64_C 95 DRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG-----------TSRIEVANLDGAHRKVLLWQSLEK 160 (349)
T ss_dssp TEEEEEETTSCSCEEEECSSCSCC---CEEEEETTTTEEEEEETT-----------TTEEEEEETTSCSCEEEECTTCSC
T ss_pred CceEEEecCCCCceEEEeCCCCCc---cEEEEecCCCeEEEEcCC-----------CCeEEEEcCCCCceEEEEeCCCCC
Confidence 357888888766555433221122 234443 6889987542 256889998766544443322222
Q ss_pred CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEE--eCCEEEEEecc
Q 005655 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLYGGY 254 (685)
Q Consensus 179 ~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~--~~~~Iyv~GG~ 254 (685)
| ..+++- ++.||+.--.. ...|+++++....-..+... . -..-.++++ .++.||+.-..
T Consensus 161 P---~~iavdp~~g~ly~td~~~--------~~~I~r~~~dG~~~~~~~~~-----~-~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 161 P---RAIALHPMEGTIYWTDWGN--------TPRIEASSMDGSGRRIIADT-----H-LFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp E---EEEEEETTTTEEEEEECSS--------SCEEEEEETTSCSCEESCCS-----S-CSCEEEEEEETTTTEEEEEETT
T ss_pred c---ceEEEecCcCeEEEeccCC--------CCEEEEEeCCCCCcEEEEEC-----C-CCCcceEEEeCCCCEEEEEECC
Confidence 2 233443 67888864211 25789998875443333211 0 011123333 37889987543
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEE
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (685)
. ..++++++....-..+...+ ...-+++++.++.||+..-. .+.|+
T Consensus 224 ~----------------~~I~~~~~dG~~~~~~~~~~----~~~P~giav~~~~ly~td~~--------------~~~V~ 269 (349)
T 3v64_C 224 H----------------HVIERANLDGSHRKAVISQG----LPHPFAITVFEDSLYWTDWH--------------TKSIN 269 (349)
T ss_dssp T----------------TEEEEEETTSCSCEEEECSS----CSSEEEEEEETTEEEEEETT--------------TTEEE
T ss_pred C----------------CEEEEEeCCCCceEEEEeCC----CCCceEEEEECCEEEEecCC--------------CCeEE
Confidence 2 24788887653322222211 11235677788999987432 35588
Q ss_pred EEECCCC
Q 005655 335 GFQLDNH 341 (685)
Q Consensus 335 ~yd~~t~ 341 (685)
++|..+.
T Consensus 270 ~~~~~~G 276 (349)
T 3v64_C 270 SANKFTG 276 (349)
T ss_dssp EEETTTC
T ss_pred EEEccCC
Confidence 8885444
No 301
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=58.23 E-value=60 Score=36.63 Aligned_cols=62 Identities=11% Similarity=0.312 Sum_probs=35.0
Q ss_pred EEEEECCEEEEEcCccCCCCCccccccCeEEEEECCCC-cEEE--ccc--CCCCCCCccceEEEE--CCEEEEEccccCC
Q 005655 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQ--LNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDT 201 (685)
Q Consensus 129 a~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~-~W~~--~~~--~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~ 201 (685)
+++...+.+|+|=| +.+|+|+.... .... |.. .++|. ... +++.+ ++++|+|=|
T Consensus 448 Ait~~rg~~yfFKg-------------~~yWr~~~~~~~~~~P~~Is~~wp~LP~-~ID-AA~~~~~~~k~yFFkG---- 508 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD-------------RFIWRTVTPRDKPMGPLLVATFWPELPE-KID-AVYEAPQEEKAVFFAG---- 508 (631)
T ss_dssp EEEECSSSEEEECS-------------SEEEEESCTTSCCEEEEEGGGTCTTSCS-SCS-BCCEETTTTEEEEEET----
T ss_pred eeEecCCcEEEEcC-------------CEEEEEcCCCCCCCCceeccccCCCCCc-cce-EEEEECCCCEEEEEec----
Confidence 44455788999977 45888876542 2221 211 11232 122 23333 578999977
Q ss_pred CCceeeeceEEEEEc
Q 005655 202 LREVRYYNDLYVFDL 216 (685)
Q Consensus 202 ~~~~~~~~dv~~yD~ 216 (685)
+.+|+|+.
T Consensus 509 -------~~yWry~~ 516 (631)
T 1ck7_A 509 -------NEYWIYSA 516 (631)
T ss_dssp -------TEEEEEET
T ss_pred -------CEEEEECC
Confidence 45788875
No 302
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=56.58 E-value=1.7e+02 Score=29.45 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=51.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE-CCEEEEEcCccCCCCCcc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~~~~~ 151 (685)
++.+.| ++.+++.|+. + .+.+||..+..-...... + ...+..... ++.+.+.||..
T Consensus 24 ~v~fs~--dg~~la~g~~--~--------~~~iw~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~d------- 80 (355)
T 3vu4_A 24 DYEFNQ--DQSCLILSTL--K--------SFEIYNVHPVAHIMSQEM--R--HLSKVRMLHRTNYVAFVTGVK------- 80 (355)
T ss_dssp EEEECT--TSSEEEEECS--S--------EEEEEEETTEEEEEEEEC--S--CCCEEEECTTSSEEEEECSST-------
T ss_pred EEEECC--CCCEEEEEcC--C--------EEEEEecCCcceeeeeec--C--CeEEEEEcCCCCEEEEEECCc-------
Confidence 455666 6777777763 1 234666655432221111 1 111112222 45666777642
Q ss_pred ccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
+.+.++|+.++.-...-. .+. .-..+.+ .+.+++.. -+.+.+||+.+.
T Consensus 81 ----~~v~iWd~~~~~~~~~~~--~~~---~v~~v~~~~~~~~~~~-----------~~~i~i~d~~~~ 129 (355)
T 3vu4_A 81 ----EVVHIWDDVKKQDVSRIK--VDA---PVKDLFLSREFIVVSY-----------GDVISVFKFGNP 129 (355)
T ss_dssp ----TEEEEEETTTTEEEEEEE--CSS---CEEEEEECSSEEEEEE-----------TTEEEEEESSTT
T ss_pred ----cEEEEEECCCCcEEEEEE--CCC---ceEEEEEcCCEEEEEE-----------cCEEEEEECCCC
Confidence 368889998876543221 122 1223333 34444432 245888888765
No 303
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=55.74 E-value=44 Score=37.77 Aligned_cols=103 Identities=14% Similarity=0.320 Sum_probs=53.3
Q ss_pred CCEEEEEcCeecCCCceeeeccEEEEEcCCC-cEE--EecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCcccccc
Q 005655 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWK--VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHY 155 (685)
Q Consensus 81 ~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~-~W~--~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~ 155 (685)
.+++|+|=|. .+|+|+.... ... .+...-+-.|..--|++.. ++++|+|=|
T Consensus 453 rg~~yfFKg~-----------~yWr~~~~~~~~~~P~~Is~~wp~LP~~IDAA~~~~~~~k~yFFkG------------- 508 (631)
T 1ck7_A 453 RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAG------------- 508 (631)
T ss_dssp SSSEEEECSS-----------EEEEESCTTSCCEEEEEGGGTCTTSCSSCSBCCEETTTTEEEEEET-------------
T ss_pred CCcEEEEcCC-----------EEEEEcCCCCCCCCceeccccCCCCCccceEEEEECCCCEEEEEec-------------
Confidence 5889999883 4566665432 111 1211100112222233333 578999977
Q ss_pred CeEEEEECCC--CcE-EEcccCCCCCC--CccceEEE--ECCEEEEEccccCCCCceeeeceEEEEEcCCC
Q 005655 156 KDFWMLDLKT--NQW-EQLNLKGCPSP--RSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 156 ~dv~~yD~~t--~~W-~~~~~~g~P~~--Rsgh~~v~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
+.+|+|+..+ ..+ ..|...+.|.. +.. ++.. .++++|+|-| +..|+||..+.
T Consensus 509 ~~yWry~~~~l~~GYPk~Is~~G~P~~~~~ID-AAf~~~~~gktYFFkG-----------~~ywryd~~~~ 567 (631)
T 1ck7_A 509 NEYWIYSASTLERGYPKPLTSLGLPPDVQRVD-AAFNWSKNKKTYIFAG-----------DKFWRYNEVKK 567 (631)
T ss_dssp TEEEEEETTEECTTCCEEGGGGTCCTTCCCCC-BCCCCTTTCEEEEEET-----------TEEEEEETTTT
T ss_pred CEEEEECCCccccCCCccchhcCCCCCCCcce-eEEEecCCCeEEEEEC-----------CEEEEEcCCcc
Confidence 4689998531 011 12222233322 222 2222 2679999977 46899997654
No 304
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=53.87 E-value=2.9e+02 Score=31.39 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=51.2
Q ss_pred CCcEEEcccCCCCCCCccceEEEE-CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEE
Q 005655 165 TNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV 243 (685)
Q Consensus 165 t~~W~~~~~~g~P~~Rsgh~~v~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~ 243 (685)
-.+|+.+.. +|.....|.+++. .+.||+..+-....-.......||+++-...+|+.+.+.+... +..+++++.+.
T Consensus 231 G~tW~~~~~--~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~-~~~~~~~~~i~ 307 (737)
T 2cn3_A 231 GVTWKAVPG--QPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSS-SDNRFCFAGLA 307 (737)
T ss_dssp TSCCEECTT--CCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTS-TTCCSEEEEEE
T ss_pred CCceEECCC--CCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCC-cccccccccEE
Confidence 457999873 6665555655543 6788886542110000002357899999999999998763211 12345554333
Q ss_pred e----CCEEEEEecc
Q 005655 244 Y----QDEVFLYGGY 254 (685)
Q Consensus 244 ~----~~~Iyv~GG~ 254 (685)
+ .+.||+.+..
T Consensus 308 v~p~~~~~ly~~~~~ 322 (737)
T 2cn3_A 308 VDRQNPDIIMVTSMN 322 (737)
T ss_dssp ECTTCTTCEEEEEEC
T ss_pred EcCCCCCEEEEEecc
Confidence 3 4677777643
No 305
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=53.35 E-value=3.1e+02 Score=31.53 Aligned_cols=236 Identities=16% Similarity=0.290 Sum_probs=110.8
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCC----CCc-ceeEEEEE---CCEEEEE
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP----PPR-SAHQAVSW---KNYLYIF 140 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P----~~R-~~ha~v~~---~~~iyvf 140 (685)
+.-+++++.|.+.+.||+..|...... ..-||+=.=.-.+|+.+..+... ..| ..+.+++. .+.||+
T Consensus 64 ~~i~~ia~dp~~~~~i~~~~g~~~~~~----~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~- 138 (789)
T 1sqj_A 64 MGTESIALDPNNPDRLYLAQGRYVGDE----WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWM- 138 (789)
T ss_dssp CSEEEEEEETTEEEEEEEEECSCTTSS----CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEE-
T ss_pred CceeEEEECCCCCCEEEEEeCccCCCc----ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEE-
Confidence 445667777644467888776421010 13344333334589988643110 123 23455555 245666
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCCCC---CCCccceEEEE----CCEEEEEccccCCCCceeeeceEEE
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP---SPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P---~~Rsgh~~v~~----~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
|... ..+|+=+=.-.+|+.+.. .| ..-.+...+.+ .+.||+..... ..|++
T Consensus 139 g~~~-----------~gl~~S~DgG~TW~~~~~--~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~---------~~v~~ 196 (789)
T 1sqj_A 139 GTRT-----------EGIWKSSDRAKTWTNVTS--IPDAFTNGIGYTSVIFDPERNGTIYASATAP---------QGMYV 196 (789)
T ss_dssp ECSS-----------SCEEEESSTTSSCEEETT--SCCCCSTTTCEEEEEECTTSTTCEEEEESST---------TCEEE
T ss_pred Eecc-----------CCEEEECCCCcccCCCcc--CccccCCCCCeEEEEECCCCCCEEEEEEcCC---------CeEEE
Confidence 3321 234443333468999875 22 11123333333 24666643210 12222
Q ss_pred EEcCCCceEEeccCCCCC-------CCC----CccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCC
Q 005655 214 FDLDQFKWQEIKPRFGSM-------WPS----PRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (685)
Q Consensus 214 yD~~t~~W~~v~~~~~~~-------~P~----~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (685)
=.=.-.+|+.+...+.+. +|. ....|.+++. .+.||+..+....+ -......+++.+-.
T Consensus 197 S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p--------~~g~~g~l~~S~Dg 268 (789)
T 1sqj_A 197 THDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGP--------WGVTFGEVWRQNRT 268 (789)
T ss_dssp ESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSS--------SCCCCCCEEEEETT
T ss_pred EcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCC--------CCCCCceEEEEeCC
Confidence 111235799987543222 121 1112444433 78888874322110 00123347888888
Q ss_pred CceeEEeecCCC--CCCC----cc---ee-EEEEE---CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEE
Q 005655 281 TWEWSKVKKIGM--PPGP----RA---GF-SMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (685)
Q Consensus 281 t~~W~~~~~~g~--~P~~----R~---g~-s~~~~---~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (685)
..+|+.+..... .|.+ .. ++ ++++. .+.||+.++....+ .....||+=.=...+|..+.
T Consensus 269 G~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~--------~~~~~l~~S~DgG~tW~~~~ 340 (789)
T 1sqj_A 269 SGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPG--------PALDSIYLSTDAGATWKDVT 340 (789)
T ss_dssp TCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSC--------SSCCCEEEESSTTSSEEEHH
T ss_pred CCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCC--------cccccEEEecCCCCCceeCc
Confidence 889999875211 0111 22 43 44444 24677766532100 00123554444456899876
No 306
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=53.16 E-value=2.1e+02 Score=29.55 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=12.3
Q ss_pred eeEEEEE-CCEEEEEcC
Q 005655 127 AHQAVSW-KNYLYIFGG 142 (685)
Q Consensus 127 ~ha~v~~-~~~iyvfGG 142 (685)
.|+++.. ++.||.+|-
T Consensus 117 ~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 117 KHCLALSSEGEVYSWGE 133 (389)
T ss_dssp SEEEEEETTSCEEEEEC
T ss_pred CeEEEEcCCCCEEEEeC
Confidence 4676666 689999994
No 307
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=52.65 E-value=1.3e+02 Score=31.63 Aligned_cols=125 Identities=8% Similarity=-0.012 Sum_probs=65.3
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEE-EcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeece
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYND 210 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~d 210 (685)
++.+||.-..+. ...+.++++|+.+++-. .++. +..-| +++- +.+||+...+..........+.
T Consensus 44 ~~~vyV~~~~~~-------~~~~~V~ViD~~t~~v~~~I~v-----G~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 44 ARRVYVNDPAHF-------AAVTQQFVIDGEAGRVIGMIDG-----GFLPN-PVVADDGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp TTEEEEEECGGG-------CSSEEEEEEETTTTEEEEEEEE-----CSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEcCccc-------CCCCEEEEEECCCCeEEEEEEC-----CCCCc-EEECCCCCEEEEEcccccccccCCCCCE
Confidence 467888754311 12368999999988743 2332 22224 4443 4578887543211111112467
Q ss_pred EEEEEcCCCceEE-eccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE
Q 005655 211 LYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 211 v~~yD~~t~~W~~-v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (685)
|.+||+.+.+-.. +....+........-+.+++. +..+|+..... .+.+.++|+.+.+-..
T Consensus 111 VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~---------------~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP---------------APAVGVVDLEGKAFKR 174 (386)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS---------------SCEEEEEETTTTEEEE
T ss_pred EEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC---------------CCeEEEEECCCCcEEE
Confidence 9999999987443 322210000111122334333 66788764211 2348889988876443
No 308
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=51.90 E-value=2e+02 Score=28.84 Aligned_cols=239 Identities=10% Similarity=0.057 Sum_probs=0.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEec---CCCCCCCcceeEEEEE-CCEEEEEcCccCCC
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS---SPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~---s~~~P~~R~~ha~v~~-~~~iyvfGG~~~s~ 147 (685)
..+++.| +++|||..-.+.++. ..|+.++ +.....++ ......-..-+.+++. .+.|||..-.....
T Consensus 20 ~~va~~~--~g~~~v~~~~~~~~~-----~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~ 90 (343)
T 2qe8_A 20 GNITLTP--DGRLFLSLHQFYQPE-----MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSK 90 (343)
T ss_dssp EEEEECT--TSCEEEEECGGGCCS-----CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHT
T ss_pred ceEEECC--CCCEEEEeCCCCCCc-----eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcC
Q ss_pred CCccccccCeEEEEECCCCc-EEEcccCCCCCCCcc--ceEEEE--CCEEEEEcc---ccCCCCceeeeceEEEEEcCCC
Q 005655 148 NQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSG--HRMVLY--KHKIIVFGG---FYDTLREVRYYNDLYVFDLDQF 219 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~-W~~~~~~g~P~~Rsg--h~~v~~--~~~lyv~GG---~~~~~~~~~~~~dv~~yD~~t~ 219 (685)
.. ..+++||+.+++ -..+........... +.+++- ++.+|+..- . ...|++||+.+.
T Consensus 91 ~~------~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~---------~~~i~v~d~~~g 155 (343)
T 2qe8_A 91 SV------PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD---------KAALIRVDLQTG 155 (343)
T ss_dssp SC------CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG---------GCEEEEEETTTC
T ss_pred CC------CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC---------CCeEEEEECCCC
Q ss_pred ceEEeccCCCCCCC-------------------------CCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeE
Q 005655 220 KWQEIKPRFGSMWP-------------------------SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274 (685)
Q Consensus 220 ~W~~v~~~~~~~~P-------------------------~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv 274 (685)
+-..+-.......| ..-.+.++...+..||+.--.... +
T Consensus 156 ~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~----------------l 219 (343)
T 2qe8_A 156 LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTS----------------M 219 (343)
T ss_dssp CEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSE----------------E
T ss_pred CEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCe----------------E
Q ss_pred EEEeCCCce---------eEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 275 WSLDPRTWE---------WSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 275 ~~yd~~t~~---------W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
|+++..... +..+...+..+ .-.++++- ++.||+..-. .+.|.+||+.+.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g---~pdgia~d~~G~l~va~~~--------------~~~V~~~d~~~G~~~ 282 (343)
T 2qe8_A 220 YRIKSADLSNLQLTDAELGSKIERYSEKP---ICDGISIDKDHNIYVGDLA--------------HSAIGVITSADRAYK 282 (343)
T ss_dssp EEEEHHHHTCTTCCHHHHHTTCEEEEECC---SCSCEEECTTCCEEEEEGG--------------GTEEEEEETTTTEEE
T ss_pred EEEEHHHhcCCCCChhhhhcceEecccCC---CCceEEECCCCCEEEEccC--------------CCeEEEEECCCCCEE
Q ss_pred EEEecCCCchhhhhccccccCCCchhhhhccCcchhhhccccccchhhhhhhhhhhccccccccccCCCcceeecccccc
Q 005655 345 PLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLA 424 (685)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (685)
.+..
T Consensus 283 ~~~~---------------------------------------------------------------------------- 286 (343)
T 2qe8_A 283 LLVT---------------------------------------------------------------------------- 286 (343)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred EEEE----------------------------------------------------------------------------
Q ss_pred ccCCCCCCcCcccccccccCCCCCCCCCCCcceeeEE-ecCEEEE
Q 005655 425 AKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVV-GKDTLYV 468 (685)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~n~~~~v-~~~~Lyi 468 (685)
.|...+-.++++ -+++|||
T Consensus 287 -------------------------~~~~~~p~~va~~~~g~l~v 306 (343)
T 2qe8_A 287 -------------------------DEKLSWTDSFNFGSDGYLYF 306 (343)
T ss_dssp -------------------------CGGGSCEEEEEECTTSCEEE
T ss_pred -------------------------CCceecCCeeEECCCCcEEE
No 309
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=49.55 E-value=2.4e+02 Score=29.25 Aligned_cols=18 Identities=11% Similarity=0.420 Sum_probs=13.6
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 005655 70 SNCSLNINPLKETELILYGG 89 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG 89 (685)
..|++++.. ++.||.+|-
T Consensus 120 ~~hs~alt~--~G~v~~wG~ 137 (413)
T 1a12_A 120 DSHTAALTD--DGRVFLWGS 137 (413)
T ss_dssp SSEEEEEET--TSCEEEEEC
T ss_pred CCeEEEEcC--CCcEEEeeC
Confidence 357777764 689999995
No 310
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=49.24 E-value=2.3e+02 Score=28.78 Aligned_cols=174 Identities=9% Similarity=0.026 Sum_probs=97.4
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
+.++++++.......+... ...-.++++. ++.||+.--. .+.++++++.....+.+...++..
T Consensus 53 ~~I~~i~~~g~~~~~~~~~----~~~~~~l~~d~~~~~ly~~D~~-----------~~~I~r~~~~g~~~~~~~~~~~~~ 117 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN----LENAIALDFHHRRELVFWSDVT-----------LDRILRANLNGSNVEEVVSTGLES 117 (349)
T ss_dssp SCEEEECTTSCCEEEEECS----CSCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTSCSCEEEECSSCSC
T ss_pred cceEEEeCCCCeeEEeecC----CCceEEEEEeccccEEEEEecc-----------CCceEEEecCCCCceEEEeCCCCC
Confidence 4688888888777765432 2223444444 5889987432 256899999887766654433322
Q ss_pred CCccceEEE--ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecc
Q 005655 179 PRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (685)
Q Consensus 179 ~Rsgh~~v~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~ 254 (685)
| .++++ .++.||+.-.. .+.|+++++....-..+... .+..| ..+++. ++.||+.-..
T Consensus 118 p---~glavd~~~g~ly~~d~~---------~~~I~~~~~dG~~~~~l~~~---~l~~P---~~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 118 P---GGLAVDWVHDKLYWTDSG---------TSRIEVANLDGAHRKVLLWQ---SLEKP---RAIALHPMEGTIYWTDWG 179 (349)
T ss_dssp C---CEEEEETTTTEEEEEETT---------TTEEEEEETTSCSCEEEECT---TCSCE---EEEEEETTTTEEEEEECS
T ss_pred c---cEEEEecCCCeEEEEcCC---------CCeEEEEcCCCCceEEEEeC---CCCCc---ceEEEecCcCeEEEeccC
Confidence 2 23333 36889887432 35788888876543333221 11222 233343 7788887532
Q ss_pred cCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccCCccccccccCCc
Q 005655 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (685)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~nd 332 (685)
. ...++++++....-..+...+ ...-.++++- +++||+.-.. .+.
T Consensus 180 ~---------------~~~I~r~~~dG~~~~~~~~~~----~~~PnGla~d~~~~~lY~aD~~--------------~~~ 226 (349)
T 3v64_C 180 N---------------TPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAK--------------HHV 226 (349)
T ss_dssp S---------------SCEEEEEETTSCSCEESCCSS----CSCEEEEEEETTTTEEEEEETT--------------TTE
T ss_pred C---------------CCEEEEEeCCCCCcEEEEECC----CCCcceEEEeCCCCEEEEEECC--------------CCE
Confidence 2 134888887654333332211 1112345553 7888887432 356
Q ss_pred EEEEECCC
Q 005655 333 LYGFQLDN 340 (685)
Q Consensus 333 l~~yd~~t 340 (685)
|++||+..
T Consensus 227 I~~~~~dG 234 (349)
T 3v64_C 227 IERANLDG 234 (349)
T ss_dssp EEEEETTS
T ss_pred EEEEeCCC
Confidence 88888764
No 311
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=48.46 E-value=1e+02 Score=35.03 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=37.2
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceE--EEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEecc
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRM--VLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~--v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (685)
..+++||+.++.-..+-.. ........+. ..+ +++.++|+..........+..++|+||+.+.+...+..
T Consensus 36 ~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~ 109 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER 109 (740)
T ss_dssp TEEEEEETTTCCEEEEECT-TTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred CcEEEEECCCCceEEEEec-hhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc
Confidence 3688999999876554221 1111111111 222 55555555432221112345789999999987665543
No 312
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=48.31 E-value=3.6e+02 Score=30.82 Aligned_cols=228 Identities=14% Similarity=0.194 Sum_probs=110.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCC----C----CCcceeEEEEE---CCEEEEE
Q 005655 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS----P----PPRSAHQAVSW---KNYLYIF 140 (685)
Q Consensus 72 ~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~----P----~~R~~ha~v~~---~~~iyvf 140 (685)
+++++.|.+.+.+|+-+-. .-||+-.-.-.+|+.+..... | .....+++++. .+.||+.
T Consensus 24 ~~i~~~p~~~~~~y~~~~~----------ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~ 93 (763)
T 3a0f_A 24 SGLVAHPTEKDLIYARTDI----------GGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLA 93 (763)
T ss_dssp EEEEECSSSTTCEEEEESS----------SCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEE
T ss_pred eEEEeCCCCCCEEEEEecc----------CcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEE
Confidence 5677777654556665421 247777767789998865210 1 11223444433 3689987
Q ss_pred cCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CC---CCC-ccceEEEE---CCEEEEEccccCCCCceeeeceEE
Q 005655 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CP---SPR-SGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 141 GG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P---~~R-sgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
.|..... . ....|++=.=.-.+|+.+.... .+ ..| .++.+++. .+.+|+.+.. ..|+
T Consensus 94 ~g~~~~~-~----~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~----------~~l~ 158 (763)
T 3a0f_A 94 QGDYVQW-D----PWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRT----------QGLW 158 (763)
T ss_dssp ECSCTTT-C----SCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSS----------SCEE
T ss_pred ecccccC-C----CCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCC----------CcEE
Confidence 6642211 1 1233444333346899986411 11 223 22355554 3577775421 2233
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEe----CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEee
Q 005655 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY----QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (685)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~----~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 288 (685)
+=.=.-.+|+.+...+.. .....+...+.+ .+.||+...... .+++-.=...+|+.+.
T Consensus 159 ~S~DgG~TW~~~~~~~~~--~~~~~~~~~i~~~p~~~~~~~~~~~~~g----------------~v~~S~DgG~tW~~~~ 220 (763)
T 3a0f_A 159 RSTDRAQTWSRMNQLPDS--STYGIGIISVIFDPKNVGTAYVASHAVG----------------GLWVTWDGGANWSQVG 220 (763)
T ss_dssp EESSTTSSCEECTTSCCC--SCTTTCEEEEEECSSSTTCEEEEESSTT----------------CEEEESSSSSSCEECT
T ss_pred EECCCCcCccccccCccc--CCCccceEEEEECCCCCCEEEEEEeCCC----------------eEEEECCCCCCccccC
Confidence 222224689998754211 111222322222 345666543210 1333333455899886
Q ss_pred cCCCCC-----------------CCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 289 KIGMPP-----------------GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 289 ~~g~~P-----------------~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
...... .++..+.+++. .+++|+........ .......||.++-...+|..+..
T Consensus 221 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~------~~~~~g~v~rS~D~G~tW~~~~~ 292 (763)
T 3a0f_A 221 GQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGP------WGVLYGEVWSYDPTNGNWKHITP 292 (763)
T ss_dssp TCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSS------SCCCCEEEEEEETTTTEEEECCT
T ss_pred CCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCC------CCCcceeEEEEeCCCCceEECCC
Confidence 321100 23444555444 57888874211000 00113458888888888988763
No 313
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=47.86 E-value=2.6e+02 Score=29.08 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=13.0
Q ss_pred ceEEEEeccCCCEEEEEcC
Q 005655 71 NCSLNINPLKETELILYGG 89 (685)
Q Consensus 71 ~~s~~~~p~~~~~L~vfGG 89 (685)
.|++++.. ++.||.+|-
T Consensus 137 ~hs~al~~--~G~v~~wG~ 153 (423)
T 3mvd_K 137 SHSACLLE--DGRVFAWGS 153 (423)
T ss_dssp SEEEEEET--TSCEEEEEC
T ss_pred CeEEEEeC--CCeEEEEeC
Confidence 67777764 689999993
No 314
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=46.56 E-value=2.5e+02 Score=28.46 Aligned_cols=86 Identities=7% Similarity=0.028 Sum_probs=42.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEE-EecCCCCC--CCcceeEEEEE--CCEEEEEcCccCCC
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSP--PPRSAHQAVSW--KNYLYIFGGEFTSP 147 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P--~~R~~ha~v~~--~~~iyvfGG~~~s~ 147 (685)
.+++.|. +..||+..-...........+.|.+||+.+.+-. .++.++.. ....-+.+++. +..||+....
T Consensus 54 ~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~---- 128 (361)
T 2oiz_A 54 HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS---- 128 (361)
T ss_dssp EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES----
T ss_pred ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC----
Confidence 5666663 4677776421111001112356889999876433 33322100 00112233333 4578876421
Q ss_pred CCccccccCeEEEEECCCCcEE
Q 005655 148 NQERFHHYKDFWMLDLKTNQWE 169 (685)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~ 169 (685)
..+.+.+||+.+++-.
T Consensus 129 ------~~~~v~v~d~~~~~~~ 144 (361)
T 2oiz_A 129 ------PATSIGIVDVAKGDYV 144 (361)
T ss_dssp ------SSEEEEEEETTTTEEE
T ss_pred ------CCCeEEEEECCCCcEE
Confidence 1256889999887543
No 315
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=45.03 E-value=55 Score=33.89 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=50.6
Q ss_pred CeEEEEECCCC--cEEEccc--CCCCCCCccceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCC
Q 005655 156 KDFWMLDLKTN--QWEQLNL--KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (685)
Q Consensus 156 ~dv~~yD~~t~--~W~~~~~--~g~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (685)
..++.+|..++ .|+.-.. .++-..+.. + +..++.+|++..+. -..|+.||..+..|..--..+...
T Consensus 20 G~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~-~-~~~~~~~~vv~p~~--------dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 20 GGLHAVDRRNGHIIWSIEPENFQPLIEIQEP-S-RLETYETLIIEPFG--------DGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp SCEEEEETTTTEEEEEECGGGSCCSEECCCS-C-TTTSSEEEEECCST--------TTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CeEEEEECCCCcEEEEecCCccCCcEEecCC-c-cccCCcEEEEEECC--------CCEEEEEECCCCcEEeeeccccce
Confidence 35778887776 4875433 111001111 0 01245666664332 246788888776554322211000
Q ss_pred CCCCccceeEEEe-------CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCc--eeEEe
Q 005655 232 WPSPRSGFQFFVY-------QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKV 287 (685)
Q Consensus 232 ~P~~Rs~~s~~~~-------~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~ 287 (685)
.-.|..+.+.-++ .+..+++|++.+. ++.+|+.+. .|+.-
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~----------------l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI----------------MYTINMLNGEIISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEE----------------EEEEETTTCCEEEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCE----------------EEEEECCCCcEEEEEe
Confidence 0112222222222 5667777776654 888998776 46553
No 316
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=44.09 E-value=3e+02 Score=28.75 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=33.2
Q ss_pred CEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEE
Q 005655 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (685)
Q Consensus 135 ~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~ 212 (685)
+.+++.|+.. ..+.+||+.+..-.. ... + ......++.| ++..++.|+.+ ..|.
T Consensus 162 ~~~las~s~D-----------g~v~iwD~~~~~~~~-~~~--~-~~~~v~~v~wspdg~~lasgs~d---------g~v~ 217 (434)
T 2oit_A 162 PSMVAVCLAD-----------GSIAVLQVTETVKVC-ATL--P-STVAVTSVCWSPKGKQLAVGKQN---------GTVV 217 (434)
T ss_dssp TTEEEEEETT-----------SCEEEEEESSSEEEE-EEE--C-GGGCEEEEEECTTSSCEEEEETT---------SCEE
T ss_pred CCEEEEEECC-----------CeEEEEEcCCCccee-ecc--C-CCCceeEEEEcCCCCEEEEEcCC---------CcEE
Confidence 5677777753 347888888763221 110 1 1222334444 46666677743 4688
Q ss_pred EEEcC
Q 005655 213 VFDLD 217 (685)
Q Consensus 213 ~yD~~ 217 (685)
+||+.
T Consensus 218 iwd~~ 222 (434)
T 2oit_A 218 QYLPT 222 (434)
T ss_dssp EECTT
T ss_pred EEccC
Confidence 88887
No 317
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=44.04 E-value=4e+02 Score=30.19 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=49.1
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCC-CC
Q 005655 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP-PG 295 (685)
Q Consensus 218 t~~W~~v~~~~~~~~P~~Rs~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~-P~ 295 (685)
-.+|+.+... |.....|.+++. ++.+|+..+-.... ..+.....+|+++-...+|+.+...... +.
T Consensus 231 G~tW~~~~~~-----p~~~~~~~~~~~~~~~l~~~~~d~~g~-------y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~ 298 (737)
T 2cn3_A 231 GVTWKAVPGQ-----PKGLLPHHGVLASNGMLYITYGDTCGP-------YDGNGKGQVWKFNTRTGEWIDITPIPYSSSD 298 (737)
T ss_dssp TSCCEECTTC-----CCSSEEEEEEECTTSEEEEEEESSCCS-------SCCSCCEEEEEEETTTCCEEECCSSCTTSTT
T ss_pred CCceEECCCC-----CCcccceEEEECCCCeEEEEecCCCCc-------cccccCceEEEEeCCCCCEEEccCCCCCCcc
Confidence 4579998754 444444545544 78888875432110 0011345689999999999998763211 12
Q ss_pred CcceeEEEEE----CCeEEEecc
Q 005655 296 PRAGFSMCVH----KKRALLFGG 314 (685)
Q Consensus 296 ~R~g~s~~~~----~~~iyvfGG 314 (685)
.+++++.+.+ .+.||+.+.
T Consensus 299 ~~~~~~~i~v~p~~~~~ly~~~~ 321 (737)
T 2cn3_A 299 NRFCFAGLAVDRQNPDIIMVTSM 321 (737)
T ss_dssp CCSEEEEEEECTTCTTCEEEEEE
T ss_pred cccccccEEEcCCCCCEEEEEec
Confidence 3556654443 356777754
No 318
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=41.62 E-value=1.4e+02 Score=33.83 Aligned_cols=140 Identities=13% Similarity=0.073 Sum_probs=72.3
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (685)
+.|+++++....-+.+.......| ..+++. ++.||+.--. ....|+++++....-..+...++.
T Consensus 475 ~~I~v~d~dg~~~~~l~~~~~~~P---~giavDp~~g~ly~td~~----------~~~~I~~~~~dG~~~~~l~~~~l~- 540 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLFREQGSKP---RAIVVDPVHGFMYWTDWG----------TPAKIKKGGLNGVDIYSLVTENIQ- 540 (699)
T ss_dssp SCEEEEBSSSCCEEEECCCSSCCC---CCEECCSSSSCCEECCCS----------SSCCEEBCCSSSCCCCEESCSSCS-
T ss_pred CeEEEEecCCCceEEEEeCCCCCc---ceEEEccCCCcEEEcccC----------CCCeEEEEeCCCCCeeEEEeCCCC-
Confidence 457788877665554433221122 233332 5677775411 014577777754433333221111
Q ss_pred CCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEecccC
Q 005655 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256 (685)
Q Consensus 179 ~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~ 256 (685)
.-.++++- +++||+.-.. .+.|++|++....-..+.... ......+++++..+.||+.-....
T Consensus 541 --~PnGlavd~~~~~LY~aD~~---------~~~I~~~d~dG~~~~~~~~~~----~~~~~P~glavd~~~lywtd~~~~ 605 (699)
T 1n7d_A 541 --WPNGITLDLLSGRLYWVDSK---------LHSISSIDVNGGNRKTILEDE----KRLAHPFSLAVFEDKVFWTDIINE 605 (699)
T ss_dssp --SCCCEEECTTTCCEEEEETT---------TTEEEEECSSSSCCEEECCCS----SSCSSCCCCEEETTEEEEECSTTT
T ss_pred --CccEEEEeccCCEEEEEecC---------CCeEEEEccCCCceEEEEecC----CcCCCceEeEEECCEEEEEeCCCC
Confidence 11233432 5788886432 467889988754433333210 111233456667889998864433
Q ss_pred CCCcccCCCCCCceeeeEEEEeCCCceeE
Q 005655 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (685)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (685)
.|+++++.+.+-.
T Consensus 606 ----------------~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 606 ----------------AIFSANRLTGSDV 618 (699)
T ss_dssp ----------------CEEEEETTTEEEE
T ss_pred ----------------eEEEEEccCCCce
Confidence 3788887665433
No 319
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=41.54 E-value=2.1e+02 Score=30.19 Aligned_cols=141 Identities=10% Similarity=0.043 Sum_probs=72.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~ 150 (685)
.+++.|..++.||+.-- + +.+++||+..+....+... ..+- ..+++. ++.|||.......
T Consensus 141 ~lavdp~~~g~Lyv~d~----~------~~I~~id~~~~~v~~~~~~---~~~P-~~ia~d~~G~~lyvad~~~~~---- 202 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGE----Q------HPTRLIDFEKEYVSTVYSG---LSKV-RTICWTHEADSMIITNDQNNN---- 202 (430)
T ss_dssp EEEEETTEEEEEEEEEB----T------EEEEEEETTTTEEEEEECC---CSCE-EEEEECTTSSEEEEEECCSCT----
T ss_pred EEEECCCCCCeEEEEeC----C------CcEEEEECCCCEEEEEecC---CCCc-ceEEEeCCCCEEEEEeCCCCc----
Confidence 44555411367877643 1 5789999999888876541 2222 223332 3459998643221
Q ss_pred cccccCeEEEEECCCCcEE---EcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCceEEec
Q 005655 151 RFHHYKDFWMLDLKTNQWE---QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~---~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (685)
....+..++.. ..|. .+.. ...-|.+++. ++.||+.--. .+.|++|++.+..-..+.
T Consensus 203 ---~~~~v~~~~~~-g~~~~~~~l~~-----~~~p~giavdp~~g~lyv~d~~---------~~~V~~~~~~~~~~~~~~ 264 (430)
T 3tc9_A 203 ---DRPNNYILTRE-SGFKVITELTK-----GQNCNGAETHPINGELYFNSWN---------AGQVFRYDFTTQETTPLF 264 (430)
T ss_dssp ---TSEEEEEEEGG-GTSCSEEEEEE-----CSSCCCEEECTTTCCEEEEETT---------TTEEEEEETTTTEEEEEE
T ss_pred ---ccceEEEEeCC-Cceeeeeeecc-----CCCceEEEEeCCCCEEEEEECC---------CCEEEEEECCCCcEEEEE
Confidence 11235556653 3332 2221 1222444444 5788876321 357999999877653443
Q ss_pred cCCCCCCCCCccceeEEEe--CCEEEEEecc
Q 005655 226 PRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (685)
Q Consensus 226 ~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~ 254 (685)
..+.. ..|+ .+++. ++.||+.--.
T Consensus 265 ~~~~~--~~P~---gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 265 TIQDS--GWEF---HIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp ECSSS--SCCE---EEEECTTSSEEEEEETT
T ss_pred EcCCC--Ccce---eEEEcCCCCEEEEEECC
Confidence 32111 1121 33333 4458887543
No 320
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=40.38 E-value=1.2e+02 Score=36.58 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=83.7
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCC---CCCCcceeEEEEE---CCEEEEEcC
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN---SPPPRSAHQAVSW---KNYLYIFGG 142 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~---~P~~R~~ha~v~~---~~~iyvfGG 142 (685)
-.|++.... .+.+ |+|.-.... ....++.|......|-.-.... ......++++++. +...||+|-
T Consensus 334 q~GfSa~~t---~d~~-~~GapG~~~----w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GA 405 (1095)
T 3k6s_A 334 QEGFSAVFT---PDGP-VLGAVGSFT----WSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGA 405 (1095)
T ss_dssp CTTSSEECC---TTCC-EEEESCSTT----TTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEE
T ss_pred cccccceec---CCcc-eEcccccCC----ccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEc
Confidence 356766666 3334 777531111 1235677877655443222111 1223446666553 234567663
Q ss_pred ccCCCCCccccccCeEEEEECCCCcEEEccc-CCC-CCCCccceEEEEC------CEEEEEccccCCCCceeeeceEEEE
Q 005655 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNL-KGC-PSPRSGHRMVLYK------HKIIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 143 ~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~-~g~-P~~Rsgh~~v~~~------~~lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
-. ..+...+++|......|..... .+. .....|+++++.+ .-||++|.-..... .....+|+|
T Consensus 406 P~-------~~~~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~--~~~G~Vyvy 476 (1095)
T 3k6s_A 406 PR-------YQHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQ--TRGGQVSVC 476 (1095)
T ss_dssp TT-------GGGTCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSS--CCCBCEEEE
T ss_pred cc-------ccccceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCc--CCCCEEEEE
Confidence 21 1245789999988788876542 121 4456777777642 24767774322111 123568888
Q ss_pred EcCC--CceEEeccCCCCC-CCCCccceeEEEe
Q 005655 215 DLDQ--FKWQEIKPRFGSM-WPSPRSGFQFFVY 244 (685)
Q Consensus 215 D~~t--~~W~~v~~~~~~~-~P~~Rs~~s~~~~ 244 (685)
.... ..|.......+.. .+..|+|++++.+
T Consensus 477 ~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~ 509 (1095)
T 3k6s_A 477 PLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVL 509 (1095)
T ss_dssp ECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEE
T ss_pred EeCCCCcceeeeEEeecccCCccccCccceEee
Confidence 5443 4577543332221 1467888888774
No 321
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=39.10 E-value=3.5e+02 Score=28.01 Aligned_cols=147 Identities=9% Similarity=-0.004 Sum_probs=82.2
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
++.||+.-.. .+.++++++....-..+...++..|+ ++++. ++.||+.--. ....|
T Consensus 170 ~~~lY~~d~~-----------~~~I~~~~~~g~~~~~l~~~~~~~P~---~iavdp~~g~ly~td~~--------~~~~I 227 (400)
T 3p5b_L 170 HSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG--------TPAKI 227 (400)
T ss_dssp TTEEEEEETT-----------TTEEEEECTTTCSEEEEEECSSCCEE---EEEEETTTTEEEEEECS--------SSCCE
T ss_pred CCceEEEECC-----------CCeEEEEeCCCCceEEEEeCCCCCcc---eEEEecccCeEEEEeCC--------CCCEE
Confidence 6899998542 25688999887766555432232232 33443 6788876311 02468
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEe-e
Q 005655 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV-K 288 (685)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~-~ 288 (685)
+++++....-..+... .+. .-.++++. ++.||+.-... ..|+++|+....-..+ .
T Consensus 228 ~~~~~dG~~~~~~~~~---~l~---~P~glavd~~~~~lY~aD~~~----------------~~I~~~d~dG~~~~~~~~ 285 (400)
T 3p5b_L 228 KKGGLNGVDIYSLVTE---NIQ---WPNGITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILE 285 (400)
T ss_dssp EEEETTSCSCEEEECS---SCS---CEEEEEEETTTTEEEEEETTT----------------TEEEEEETTSCCCEEEEE
T ss_pred EEEeCCCCccEEEEEC---CCC---ceEEEEEEeCCCEEEEEECCC----------------CEEEEEeCCCCccEEEEe
Confidence 8888875433333211 001 11233333 78899885432 3488888765433333 2
Q ss_pred cCCCCCCCcceeEEEEECCeEEEecceecccCCccccccccCCcEEEEECCCC
Q 005655 289 KIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 289 ~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (685)
..+.. ...+++++.++.||+.--. .+.|+++|..+.
T Consensus 286 ~~~~l---~~P~gl~v~~~~lywtd~~--------------~~~V~~~~~~~G 321 (400)
T 3p5b_L 286 DEKRL---AHPFSLAVFEDKVFWTDII--------------NEAIFSANRLTG 321 (400)
T ss_dssp CSSTT---SSEEEEEEETTEEEEEESS--------------SCSEEEEESSSC
T ss_pred CCCCC---CCCEEEEEeCCEEEEecCC--------------CCeEEEEEcCCC
Confidence 21112 2345777889999987622 355888885544
No 322
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=38.76 E-value=4.5e+02 Score=29.22 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=41.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCC-CcceeEEEEE-CCEEEEEcCccCCCCCc
Q 005655 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP-PRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~-~R~~ha~v~~-~~~iyvfGG~~~s~~~~ 150 (685)
++...| ++.++..++. + ..|.+|+..+ .+..+. ...|. .+..|+++.- ++++++.||..
T Consensus 90 ~vawSP--dG~~LAs~s~--d-------g~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D------ 150 (588)
T 2j04_A 90 VCKPSP--IDDWMAVLSN--N-------GNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED------ 150 (588)
T ss_dssp EEEECS--SSSCEEEEET--T-------SCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT------
T ss_pred EEEECC--CCCEEEEEeC--C-------CcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC------
Confidence 334444 5676666662 2 2577777444 555555 33332 3455555554 57778888763
Q ss_pred cccccCeEEEEECCCCc
Q 005655 151 RFHHYKDFWMLDLKTNQ 167 (685)
Q Consensus 151 ~~~~~~dv~~yD~~t~~ 167 (685)
..+-+||+.++.
T Consensus 151 -----GtVkIWd~~~~~ 162 (588)
T 2j04_A 151 -----GELQFFSIRKNS 162 (588)
T ss_dssp -----SEEEEEECCCCT
T ss_pred -----CEEEEEECCCCc
Confidence 357788888763
No 323
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=38.72 E-value=3.1e+02 Score=27.36 Aligned_cols=66 Identities=9% Similarity=-0.034 Sum_probs=35.5
Q ss_pred CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-CCeEEEecceecccCCcc
Q 005655 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGD 323 (685)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~ 323 (685)
++.+++.|+.++. -+.++|+.+..-...-..+. ....-.++++. ++++++.|+..
T Consensus 206 ~g~~l~s~s~d~~---------------~v~iwd~~~~~~~~~~~~g~--h~~~v~~~~~s~~~~~l~s~s~d------- 261 (355)
T 3vu4_A 206 KSDMVATCSQDGT---------------IIRVFKTEDGVLVREFRRGL--DRADVVDMKWSTDGSKLAVVSDK------- 261 (355)
T ss_dssp TSSEEEEEETTCS---------------EEEEEETTTCCEEEEEECTT--CCSCEEEEEECTTSCEEEEEETT-------
T ss_pred CCCEEEEEeCCCC---------------EEEEEECCCCcEEEEEEcCC--CCCcEEEEEECCCCCEEEEEECC-------
Confidence 6677777776541 15677777654332221110 11122334443 56777777653
Q ss_pred ccccccCCcEEEEECCCC
Q 005655 324 VIMSLFLNELYGFQLDNH 341 (685)
Q Consensus 324 ~~~~~~~ndl~~yd~~t~ 341 (685)
..|.+||+.+.
T Consensus 262 -------~~v~iw~~~~~ 272 (355)
T 3vu4_A 262 -------WTLHVFEIFND 272 (355)
T ss_dssp -------CEEEEEESSCC
T ss_pred -------CEEEEEEccCC
Confidence 35889998764
No 324
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=37.87 E-value=3.3e+02 Score=28.19 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=13.5
Q ss_pred CccceEEEE-CCEEEEEccc
Q 005655 180 RSGHRMVLY-KHKIIVFGGF 198 (685)
Q Consensus 180 Rsgh~~v~~-~~~lyv~GG~ 198 (685)
-..|++++. ++.||.+|--
T Consensus 302 G~~ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 302 GQHHTVILTTDLKCSVVGRP 321 (423)
T ss_dssp CSSEEEEEETTCCEEEEECC
T ss_pred ccCeEEEEeCCCcEEEEECC
Confidence 456666666 6899999853
No 325
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=37.75 E-value=3.9e+02 Score=28.23 Aligned_cols=55 Identities=11% Similarity=-0.118 Sum_probs=34.0
Q ss_pred eeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE-C-C-eEEEecceecccCCccccccccCCcEEEEECCCCcEE
Q 005655 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K-K-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (685)
Q Consensus 271 ~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~-~-~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (685)
.+.++++|+.+.+=...- |.++...++++. + . ++|+.... .+.|.+||+.+.+-.
T Consensus 349 s~~VsVID~~T~kvv~~I-----~vg~~P~gia~spDg~~~lyv~n~~--------------s~~VsVID~~t~kvv 406 (426)
T 3c75_H 349 SRFVVVLNAETGERINKI-----ELGHEIDSINVSQDAEPLLYALSAG--------------TQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEEEETTTCCEEEEE-----EEEEEECEEEECCSSSCEEEEEETT--------------TTEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCeEEEEE-----ECCCCcCeEEEccCCCEEEEEEcCC--------------CCeEEEEECCCCCEE
Confidence 467999999887544332 223334455555 3 3 46655432 367999999887654
No 326
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=37.18 E-value=3.3e+02 Score=28.92 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=13.7
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 005655 70 SNCSLNINPLKETELILYGG 89 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG 89 (685)
..|++++.. ++.||.+|-
T Consensus 76 ~~Ht~alt~--~G~v~~wG~ 93 (473)
T 3of7_A 76 GMHTLALDE--ESNVWSWGC 93 (473)
T ss_dssp SSEEEEEET--TCCEEEEEC
T ss_pred CCeEEEEec--CCeEEEeEC
Confidence 467777764 689999995
No 327
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=34.85 E-value=5.1e+02 Score=28.76 Aligned_cols=181 Identities=9% Similarity=0.017 Sum_probs=101.2
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEE--ECCEEEEEcCccCC
Q 005655 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTS 146 (685)
Q Consensus 69 R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~--~~~~iyvfGG~~~s 146 (685)
+...++.+.+. ++.||+.--. .+.++++++.......+..... ..-.++++ .++.||+.-..
T Consensus 37 ~~~~~l~~d~~-~~~lywtD~~---------~~~I~r~~~~g~~~~~v~~~g~---~~P~GlAvD~~~~~LY~tD~~--- 100 (628)
T 4a0p_A 37 KEASALDFDVT-DNRIYWTDIS---------LKTISRAFMNGSALEHVVEFGL---DYPEGMAVDWLGKNLYWADTG--- 100 (628)
T ss_dssp SCEEEEEEETT-TTEEEEEETT---------TTEEEEEETTSCSCEEEECSSC---SCCCEEEEETTTTEEEEEETT---
T ss_pred CceEEEEEECC-CCEEEEEECC---------CCeEEEEECCCCCcEEEEeCCC---CCcceEEEEeCCCEEEEEECC---
Confidence 34456666654 4788887541 2468889988766665543221 11234444 36899997432
Q ss_pred CCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEc-cccCCCCceeeeceEEEEEcCCCceEE
Q 005655 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFG-GFYDTLREVRYYNDLYVFDLDQFKWQE 223 (685)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~G-G~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (685)
.+.++++++....=+.+....+..|| ++++. ++.||+.- |. ...|+++++....-..
T Consensus 101 --------~~~I~v~~~dG~~~~~l~~~~l~~P~---~iavdp~~G~lY~tD~g~---------~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 101 --------TNRIEVSKLDGQHRQVLVWKDLDSPR---ALALDPAEGFMYWTEWGG---------KPKIDRAAMDGSERTT 160 (628)
T ss_dssp --------TTEEEEEETTSTTCEEEECSSCCCEE---EEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEE
T ss_pred --------CCEEEEEecCCCcEEEEEeCCCCCcc---cEEEccCCCeEEEeCCCC---------CCEEEEEeCCCCceEE
Confidence 35789999876543333322233332 34444 67898863 21 3578888887655444
Q ss_pred eccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeE
Q 005655 224 IKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (685)
Q Consensus 224 v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s 301 (685)
+-.. +..| .++++. ++.||+.-... +.++++++....=+.+... .+ .-++
T Consensus 161 l~~~----~~~P---~GlalD~~~~~LY~aD~~~----------------~~I~~~d~dG~~~~v~~~~--l~---~P~g 212 (628)
T 4a0p_A 161 LVPN----VGRA---NGLTIDYAKRRLYWTDLDT----------------NLIESSNMLGLNREVIADD--LP---HPFG 212 (628)
T ss_dssp EECS----CSSE---EEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEEEC--CS---CEEE
T ss_pred EECC----CCCc---ceEEEccccCEEEEEECCC----------------CEEEEEcCCCCceEEeecc--CC---CceE
Confidence 4321 1111 123333 68899875433 2478888754322333321 12 2357
Q ss_pred EEEECCeEEEec
Q 005655 302 MCVHKKRALLFG 313 (685)
Q Consensus 302 ~~~~~~~iyvfG 313 (685)
+++.+++||+.-
T Consensus 213 lav~~~~ly~tD 224 (628)
T 4a0p_A 213 LTQYQDYIYWTD 224 (628)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEEEEec
Confidence 788888998874
No 328
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=33.95 E-value=4e+02 Score=30.31 Aligned_cols=154 Identities=13% Similarity=0.074 Sum_probs=80.2
Q ss_pred CeEEEEECCC--CcEEEcccCCCCCCCccceEEEECCEEEEEccccCC-CCceeeeceEEEEEcCC--------CceEEe
Q 005655 156 KDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDT-LREVRYYNDLYVFDLDQ--------FKWQEI 224 (685)
Q Consensus 156 ~dv~~yD~~t--~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~-~~~~~~~~dv~~yD~~t--------~~W~~v 224 (685)
+.+|..++.. ..|.++.. |. ...+ ....++.+|++....-. +...-....|..+|+.+ ..|+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~---~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKINM---PS-DATL-QGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKIL 343 (711)
T ss_dssp EEEEEEECSSSSCEEEECCS---CT-TCEE-EEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEE
T ss_pred eeEEEEcCCCCCCcceEeec---CC-cceE-eeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEE
Confidence 6778887653 66877743 32 2222 34668999997643210 00011345788898765 368874
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEE
Q 005655 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (685)
Q Consensus 225 ~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~ 304 (685)
-.+ -..+.-..+...++.||+..-... ...++++++.+..|....... .|.. ...+...
T Consensus 344 ~~~-----~~~~~l~~~~~~~~~l~~~~~~~~--------------~~~l~~~~~~~g~~~~~~~i~-lp~~-~~~~~~~ 402 (711)
T 4hvt_A 344 FTP-----TANEVFNFISTTKDRVFLATYDNV--------------VAKVVTFTLENEQWTKPVVLK-LPYQ-NAIFGMS 402 (711)
T ss_dssp ECC-----CTTEEEEEEEECSSCEEEEEEETT--------------EEEEEEECEETTEECCCEEEC-CCST-TCEEEEE
T ss_pred ECC-----CCCCeEEEEEEECCEEEEEEEECC--------------EEEEEEEECCCCceEEEeccC-CCCC-eEEEEEe
Confidence 322 122333344455777776543221 345888888777774322011 2221 1122222
Q ss_pred E---CCeEEEe-cceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 305 H---KKRALLF-GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 305 ~---~~~iyvf-GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
. ++.+++. .+.. ....+|.||+. ..+..+..
T Consensus 403 ~~~~~~~~~~~~ss~~------------~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 403 SYEEEEEALITIENSI------------VPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp CCTTCSCEEEEEECSS------------SCCEEEEECTT-SCEEEEEC
T ss_pred ecCcCCEEEEEEecCC------------CCCEEEEEeCC-CcEEEEec
Confidence 1 2333332 3322 24679999988 77766654
No 329
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=31.80 E-value=5.7e+02 Score=28.36 Aligned_cols=120 Identities=13% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCc--------EEEecCCCCCCCcceeEEEEECCEEEE
Q 005655 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--------WKVISSPNSPPPRSAHQAVSWKNYLYI 139 (685)
Q Consensus 68 ~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~--------W~~l~s~~~P~~R~~ha~v~~~~~iyv 139 (685)
.+..++++..| ++.+++.||. + +.+.+||+.++. ...+.....-..-.-.+++..++. ++
T Consensus 129 ~~sv~svafSP--DG~~LAsgs~--D-------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-La 196 (588)
T 2j04_A 129 SRTYHCFEWNP--IESSIVVGNE--D-------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LV 196 (588)
T ss_dssp TTCEEEEEECS--SSSCEEEEET--T-------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EE
T ss_pred cccEEEEEEcC--CCCEEEEEcC--C-------CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EE
Confidence 45677888888 7788888883 2 357788888763 233321110011122333444555 66
Q ss_pred EcCccCCCCCccccccCeEEEEECCCCc----EEEcccCCCCCCCc-cceEEEECCEEEEEccccCCCCceeeeceEEEE
Q 005655 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQ----WEQLNLKGCPSPRS-GHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (685)
Q Consensus 140 fGG~~~s~~~~~~~~~~dv~~yD~~t~~----W~~~~~~g~P~~Rs-gh~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (685)
.+|.+ +.+.++|+.++. |..+.. ..+. -.+++.. +.+++.++ ...|.+|
T Consensus 197 ass~D-----------~tVrlWd~~~~~~~~~~~tL~~----~h~~~V~svaFs-g~~LASa~----------~~tIkLW 250 (588)
T 2j04_A 197 AALSN-----------NSVFSMTVSASSHQPVSRMIQN----ASRRKITDLKIV-DYKVVLTC----------PGYVHKI 250 (588)
T ss_dssp EEETT-----------CCEEEECCCSSSSCCCEEEEEC----CCSSCCCCEEEE-TTEEEEEC----------SSEEEEE
T ss_pred EEeCC-----------CeEEEEECCCCccccceeeecc----cccCcEEEEEEE-CCEEEEEe----------CCeEEEE
Confidence 66642 457777877665 334422 1221 1222222 44445444 1478899
Q ss_pred EcCCCceEEec
Q 005655 215 DLDQFKWQEIK 225 (685)
Q Consensus 215 D~~t~~W~~v~ 225 (685)
|+.+..=....
T Consensus 251 d~~~~~~~~~~ 261 (588)
T 2j04_A 251 DLKNYSISSLK 261 (588)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCeEEEEE
Confidence 98877654443
No 330
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=29.56 E-value=4.9e+02 Score=26.85 Aligned_cols=18 Identities=6% Similarity=0.202 Sum_probs=13.0
Q ss_pred cceeEEEe-CCEEEEEecc
Q 005655 237 SGFQFFVY-QDEVFLYGGY 254 (685)
Q Consensus 237 s~~s~~~~-~~~Iyv~GG~ 254 (685)
..|++++. ++.||.+|-.
T Consensus 173 ~~hs~alt~~G~v~~wG~n 191 (413)
T 1a12_A 173 NDHLVMLTADGDLYTLGCG 191 (413)
T ss_dssp SSEEEEEETTSCEEEEECC
T ss_pred CceEEEEcCCCCEEEeeCC
Confidence 35666666 7889999854
No 331
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=29.22 E-value=2.6e+02 Score=29.67 Aligned_cols=126 Identities=10% Similarity=0.004 Sum_probs=62.4
Q ss_pred CCEEEEEcCccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceE
Q 005655 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (685)
Q Consensus 134 ~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (685)
+..+||.-..+.. ..+.+.++|+.+++=..--+ .+..- .+++- +++||+.--+..........+.|
T Consensus 84 ~~~vyV~n~~~~~-------~~~~VsVID~~t~~vv~~I~----vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 84 ARRVYIQDPAHFA-------AITQQFVIDGSTGRILGMTD----GGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp TTEEEEEECTTTC-------SSEEEEEEETTTTEEEEEEE----ECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCcCC-------CCCeEEEEECCCCEEEEEEE----CCCCC-ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 3567887643211 01689999998886433222 22222 23332 55788864211100001125789
Q ss_pred EEEEcCCCceEE-eccCCCCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEE
Q 005655 212 YVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (685)
Q Consensus 212 ~~yD~~t~~W~~-v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (685)
.+||+.+.+-.. +.............-+.+++. +..+||..-. ..+.+.++|+.+.+-..
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~---------------~~~~VsVID~~t~kvv~ 214 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS---------------PAPAVGVVDLEGKTFDR 214 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS---------------SSCEEEEEETTTTEEEE
T ss_pred EEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC---------------CCCeEEEEECCCCeEEE
Confidence 999999886543 322100000001112233333 6678876321 12458899998876543
No 332
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=28.91 E-value=5e+02 Score=26.76 Aligned_cols=174 Identities=8% Similarity=0.065 Sum_probs=92.5
Q ss_pred ccEEEEEcCCCcEEEecCCCCCCCcceeEEEEE--CCEEEEEcCccCCCCCccccccCeEEEEECCCC----cEEEcccC
Q 005655 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN----QWEQLNLK 174 (685)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t~----~W~~~~~~ 174 (685)
+.+.++++....+..+.. ..+.-.++++. ++.||+.--. .+.++++++... ....+...
T Consensus 92 ~~I~~i~l~~~~~~~~~~----~~~~~~~l~~d~~~~~lywsD~~-----------~~~I~~~~~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLS-----------QRMICSTQLDRAHGVSSYDTVISR 156 (400)
T ss_dssp TEEEEECTTSCSCEEEEC----SCSCEEEEEEETTTTEEEEEETT-----------TTEEEEEEC------CCCEEEECS
T ss_pred ceeEEEccCCcceeEecc----ccCcceEEeeeeccCceEEEecC-----------CCeEEEEEcccCCCCCcceEEEeC
Confidence 467788888777766543 22334555554 5889987432 246888888652 23333221
Q ss_pred CCCCCCccceEEE--ECCEEEEEccccCCCCceeeeceEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEE
Q 005655 175 GCPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (685)
Q Consensus 175 g~P~~Rsgh~~v~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~--~~~Iyv 250 (685)
++ ..-.++++ .++.||+.-.. ...|+++++....-..+... .+..|+ .+++. ++.||+
T Consensus 157 ~~---~~p~glavD~~~~~lY~~d~~---------~~~I~~~~~~g~~~~~l~~~---~~~~P~---~iavdp~~g~ly~ 218 (400)
T 3p5b_L 157 DI---QAPDGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFRE---NGSKPR---AIVVDPVHGFMYW 218 (400)
T ss_dssp SC---SCEEEEEEETTTTEEEEEETT---------TTEEEEECTTTCSEEEEEEC---SSCCEE---EEEEETTTTEEEE
T ss_pred CC---CCcccEEEEecCCceEEEECC---------CCeEEEEeCCCCceEEEEeC---CCCCcc---eEEEecccCeEEE
Confidence 11 12223333 27899987442 35688888876655444322 112222 33443 678887
Q ss_pred EecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCCCCCCCcceeEEEEE--CCeEEEecceecccCCccccccc
Q 005655 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSL 328 (685)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g~~P~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~ 328 (685)
.-... ...++++++....=..+...+ ...-.++++- +++||+.-..
T Consensus 219 td~~~---------------~~~I~~~~~dG~~~~~~~~~~----l~~P~glavd~~~~~lY~aD~~------------- 266 (400)
T 3p5b_L 219 TDWGT---------------PAKIKKGGLNGVDIYSLVTEN----IQWPNGITLDLLSGRLYWVDSK------------- 266 (400)
T ss_dssp EECSS---------------SCCEEEEETTSCSCEEEECSS----CSCEEEEEEETTTTEEEEEETT-------------
T ss_pred EeCCC---------------CCEEEEEeCCCCccEEEEECC----CCceEEEEEEeCCCEEEEEECC-------------
Confidence 64211 123778887654333332211 1112344444 7889987432
Q ss_pred cCCcEEEEECCC
Q 005655 329 FLNELYGFQLDN 340 (685)
Q Consensus 329 ~~ndl~~yd~~t 340 (685)
.+.|+++|+..
T Consensus 267 -~~~I~~~d~dG 277 (400)
T 3p5b_L 267 -LHSISSIDVNG 277 (400)
T ss_dssp -TTEEEEEETTS
T ss_pred -CCEEEEEeCCC
Confidence 35688888764
No 333
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=27.14 E-value=7.4e+02 Score=28.23 Aligned_cols=229 Identities=11% Similarity=0.172 Sum_probs=109.9
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCC---CCcceeEEEEEC---CEEEEEcCc
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP---PPRSAHQAVSWK---NYLYIFGGE 143 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P---~~R~~ha~v~~~---~~iyvfGG~ 143 (685)
.-.++++.|.+.+.+|+ |+. . .-||+-+-.-.+|+.+.....+ ..+..+++++.. +.||+..|.
T Consensus 16 ~i~~i~~~p~~~~~~~a-~~~--~-------ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~ 85 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYA-RTD--I-------GGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGR 85 (789)
T ss_dssp CEEEEEECSSSTTCEEE-EES--S-------SCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECS
T ss_pred cEEEEEECCCCCCEEEE-Eec--C-------CCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCc
Confidence 44566777754456665 331 1 2467777677899987652211 123345555543 578887764
Q ss_pred cCCCCCccccccCeEEEEECCCCcEEEcccCCC----CCCC-ccceEEEE---CCEEEEEccccCCCCceeeeceEEEEE
Q 005655 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC----PSPR-SGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (685)
Q Consensus 144 ~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~----P~~R-sgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (685)
.... ....|++=+-.-.+|+.+..... ...| ..+++++. .+.||+ |... ..||+=+
T Consensus 86 ~~~~------~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~-g~~~---------~gl~~S~ 149 (789)
T 1sqj_A 86 YVGD------EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWM-GTRT---------EGIWKSS 149 (789)
T ss_dssp CTTS------SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEE-ECSS---------SCEEEES
T ss_pred cCCC------cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEE-Eecc---------CCEEEEC
Confidence 2210 01334443334468999864210 1123 23455555 345666 3311 2233322
Q ss_pred cCCCceEEeccCCCCCCCCCccceeEEEe----CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecCC
Q 005655 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVY----QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (685)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~Rs~~s~~~~----~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~g 291 (685)
=.-.+|+.+...+....+ . .+...+.+ .+.||+....... +++=.=...+|+.+....
T Consensus 150 DgG~TW~~~~~~~~~~~~-~-~~~~~i~~~p~~~~~~~~~~~~~~~----------------v~~S~DgG~TW~~~~~~~ 211 (789)
T 1sqj_A 150 DRAKTWTNVTSIPDAFTN-G-IGYTSVIFDPERNGTIYASATAPQG----------------MYVTHDGGVSWEPVAGQP 211 (789)
T ss_dssp STTSSCEEETTSCCCCST-T-TCEEEEEECTTSTTCEEEEESSTTC----------------EEEESSTTSSCEECTTCC
T ss_pred CCCcccCCCccCccccCC-C-CCeEEEEECCCCCCEEEEEEcCCCe----------------EEEEcCCCcCcccCCCCc
Confidence 234689998764210001 1 23333332 3456664432111 333222455899876211
Q ss_pred C---------CC----CCcceeEEEEE--CCeEEEecceecccCCccccccccCCcEEEEECCCCcEEEEEe
Q 005655 292 M---------PP----GPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (685)
Q Consensus 292 ~---------~P----~~R~g~s~~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (685)
. .| ...+.+.+++. .+.||+..+..... -......||+.+-...+|..+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p------~~g~~g~l~~S~DgG~tW~~~~~ 277 (789)
T 1sqj_A 212 SSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGP------WGVTFGEVWRQNRTSGAWDDITP 277 (789)
T ss_dssp CSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSS------SCCCCCCEEEEETTTCCEEECCC
T ss_pred CccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCC------CCCCCceEEEEeCCCCceEECcC
Confidence 0 11 01112455544 78888874221000 00113457777777778887764
No 334
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=26.95 E-value=5.3e+02 Score=26.44 Aligned_cols=136 Identities=11% Similarity=0.086 Sum_probs=70.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCce---eeeccEEEEEcCC--CcEEEecCCCC-C--CCcceeEEEEEC---C--EEEE
Q 005655 73 SLNINPLKETELILYGGEFYNGNKT---YVYGDLYRYDVEK--QEWKVISSPNS-P--PPRSAHQAVSWK---N--YLYI 139 (685)
Q Consensus 73 s~~~~p~~~~~L~vfGG~~~~g~~~---~~~ndv~~yd~~~--~~W~~l~s~~~-P--~~R~~ha~v~~~---~--~iyv 139 (685)
-+++.| ++.+|+--|..+.+-.. .....+++||+.+ .+-..+...+. + ..-.-|.+.++. + +|||
T Consensus 54 Di~~~~--~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 54 DLEILP--NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp EEEECT--TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred eeEEcC--CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 344554 57777776654322111 1245799999983 34444433221 1 223456666542 3 5777
Q ss_pred EcCccCCCCCccccccCeEEEEECCCCcEEEcccCC-CCCCCccceEEEECCEEEEEccccCCCCc--------eeeece
Q 005655 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLRE--------VRYYND 210 (685)
Q Consensus 140 fGG~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~Rsgh~~v~~~~~lyv~GG~~~~~~~--------~~~~~d 210 (685)
+.-... ...-.++.+++.+.....+.... .+..+.+-..+.-++.+|+-+-..-+... ......
T Consensus 132 vnh~~~-------~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~ 204 (355)
T 3sre_A 132 VNHPGS-------SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF 204 (355)
T ss_dssp EECSTT-------CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred EECCCC-------CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence 744211 12356888888877776664422 24445555556668888875432111000 012357
Q ss_pred EEEEEcC
Q 005655 211 LYVFDLD 217 (685)
Q Consensus 211 v~~yD~~ 217 (685)
|++||+.
T Consensus 205 vyr~d~~ 211 (355)
T 3sre_A 205 VTYYSPN 211 (355)
T ss_dssp EEEECTT
T ss_pred EEEEECC
Confidence 8899884
No 335
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.91 E-value=1.1e+02 Score=24.67 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=24.4
Q ss_pred cHHHHHHHHHhcCCCCcchhhHhhHHHHHHHHHHhhhhHHHHHHHHHH
Q 005655 611 TSMYWQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAVLEAE 658 (685)
Q Consensus 611 t~~~w~~~~~~~~~~~~k~l~~~~f~la~~r~~e~~~~l~~~~~le~~ 658 (685)
+..||+.+| |=||.|..=|.+-=..|. ++|..|+.|
T Consensus 26 se~YWk~lA---------E~RR~AL~eaL~EN~~Lh---~~ie~l~eE 61 (83)
T 1uii_A 26 SSQYWKEVA---------EKRRKALYEALKENEKLH---KEIEQKDNE 61 (83)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred hHHHHHHHH---------HHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 468999999 778888877766555555 444444444
No 336
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=24.33 E-value=5.5e+02 Score=25.73 Aligned_cols=60 Identities=12% Similarity=0.241 Sum_probs=32.6
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCccceEEEE--CCEEEEEccccCCCCceeeeceEEEEEcCCCc
Q 005655 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (685)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (685)
+.+++||+.+++-... .|... ++.+++. +++||+..-...........+.|.+||+.+.+
T Consensus 31 ~~v~v~D~~t~~~~~~----i~~g~-~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGM----VPTAF-NGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp CEEEEEETTTCCEEEE----EECCE-EEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CeEEEEECCCCeEEEE----ecCCC-CCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 5788999888765432 22222 2223333 45888875322111001124678999998754
No 337
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=23.83 E-value=29 Score=33.39 Aligned_cols=7 Identities=29% Similarity=1.099 Sum_probs=4.7
Q ss_pred hhhhccC
Q 005655 506 EWVEASE 512 (685)
Q Consensus 506 ~w~~~~~ 512 (685)
+|+.+.+
T Consensus 149 ~WL~EAE 155 (208)
T 2iu1_A 149 KWLKEAE 155 (208)
T ss_dssp HHHHCSS
T ss_pred HHHHccc
Confidence 6987643
No 338
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=23.26 E-value=8.4e+02 Score=27.53 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=59.7
Q ss_pred ccEEEEEcCC--CcEEEecCCCCCCCcceeEEEEECCEEEEEcCccCCCCCccccccCeEEEEECCC--------CcEEE
Q 005655 101 GDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--------NQWEQ 170 (685)
Q Consensus 101 ndv~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~~~~iyvfGG~~~s~~~~~~~~~~dv~~yD~~t--------~~W~~ 170 (685)
+.+|..+... ..|..+..+ . ...+ ....++.+|++....-... +....-..+..+++.+ ..|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKINMP---S-DATL-QGSFKEYVFWLLRSDWKFK-SHNIKAGSLVALHFTDLLKTESDKTSLKI 342 (711)
T ss_dssp EEEEEEECSSSSCEEEECCSC---T-TCEE-EEEETTEEEEECSSCEEET-TEEECTTCEEEEEGGGGGSCGGGCTTCEE
T ss_pred eeEEEEcCCCCCCcceEeecC---C-cceE-eeeECCEEEEEECcccccc-cccCCCCeEEEEECCcccccccccccceE
Confidence 6778887664 678877332 1 2222 3455889999764321100 0011235788898765 36987
Q ss_pred cccCCCCCCCcc-ceEEEECCEEEEEccccCCCCceeeeceEEEEEcCCCceE
Q 005655 171 LNLKGCPSPRSG-HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (685)
Q Consensus 171 ~~~~g~P~~Rsg-h~~v~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (685)
+-+ |..... ..+...+++||+..-..+ ...++++|+.+..|.
T Consensus 343 ~~~---~~~~~~l~~~~~~~~~l~~~~~~~~-------~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 343 LFT---PTANEVFNFISTTKDRVFLATYDNV-------VAKVVTFTLENEQWT 385 (711)
T ss_dssp EEC---CCTTEEEEEEEECSSCEEEEEEETT-------EEEEEEECEETTEEC
T ss_pred EEC---CCCCCeEEEEEEECCEEEEEEEECC-------EEEEEEEECCCCceE
Confidence 433 223222 234444677776543222 456889998888774
No 339
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=22.72 E-value=7.1e+02 Score=26.46 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=103.1
Q ss_pred eecCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCceeeeccEEE---EEcCCCcE-EEecCCCCCCCcceeEEEEEC
Q 005655 59 VEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYR---YDVEKQEW-KVISSPNSPPPRSAHQAVSWK 134 (685)
Q Consensus 59 ~~~~~~~P~~R~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~---yd~~~~~W-~~l~s~~~P~~R~~ha~v~~~ 134 (685)
++++...|..-.-|+++.+ ++.-|.+|=...+-... -+.-+|+ |+.-...- +.+++-. -..-+.-++-.++
T Consensus 274 ~t~L~~i~~vTe~HSFa~i---~~~~fa~GyHnGDv~PR-e~G~~yfs~~~~sp~~~vrr~i~sey-~~~AsEPCvkyYd 348 (670)
T 3ju4_A 274 KTDLGLIPSVTEVHSFATI---DNNGFAMGYHQGDVAPR-EVGLFYFPDAFNSPSNYVRRQIPSEY-EPDASEPCIKYYD 348 (670)
T ss_dssp EEECCSCTTCSEEEEEEEC---SSSCEEEEEEECSSSSC-EEEEEEETTTTTCTTCCEEEECCGGG-CTTEEEEEEEEET
T ss_pred ecccccccceeeeeeeeEe---cCCceEEEeccCCCCcc-eeeEEEecccccCCcceeeeechhhh-ccccccchhhhhC
Confidence 3466767777778999988 56667887432222221 1222222 11111222 3343321 1112223444569
Q ss_pred CEEEEEc-CccCCCCCccccccCeEEEEECCCCcEEEcccCCCCCCCccceEEEECCEEEEEccccCC------CCcee-
Q 005655 135 NYLYIFG-GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDT------LREVR- 206 (685)
Q Consensus 135 ~~iyvfG-G~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rsgh~~v~~~~~lyv~GG~~~~------~~~~~- 206 (685)
+.||+.- |..+.. .-+.+.+-+..-..|..+... ...-.+..-.+.+++.||+||--... ..+.+
T Consensus 349 gvLyLtTRgt~~~~------~GS~L~rs~d~Gq~w~slrfp-~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~RY 421 (670)
T 3ju4_A 349 GVLYLITRGTRGDR------LGSSLHRSRDIGQTWESLRFP-HNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRY 421 (670)
T ss_dssp TEEEEEEEESCTTS------CCCEEEEESSTTSSCEEEECT-TCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCS
T ss_pred CEEEEEecCcCCCC------CcceeeeecccCCchhheecc-ccccccCCCcceeCCEEEEEeccccccccccCCCcccc
Confidence 9999985 322221 225666777777889988652 12223334457789999999874321 11111
Q ss_pred ---eeceE-EEEEc-----CCCceEEeccCC--CCCCCCCccceeEEEeCCEE-EEEecccCCCC------cccCCCCCC
Q 005655 207 ---YYNDL-YVFDL-----DQFKWQEIKPRF--GSMWPSPRSGFQFFVYQDEV-FLYGGYSKEVS------TDKNQSEKG 268 (685)
Q Consensus 207 ---~~~dv-~~yD~-----~t~~W~~v~~~~--~~~~P~~Rs~~s~~~~~~~I-yv~GG~~~~~~------~~~~~~~~~ 268 (685)
|-..+ ...++ ..-+|..|...- ++....+..--++|+-++-| |||||-+.-.+ ..+......
T Consensus 422 ~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~~~~~~ 501 (670)
T 3ju4_A 422 KASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSD 501 (670)
T ss_dssp SCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCCTTSTT
T ss_pred cccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccCccccC
Confidence 11111 12222 345677776441 22223333333444446665 67888543210 111122223
Q ss_pred ceeeeEEEEeC
Q 005655 269 IIHSDLWSLDP 279 (685)
Q Consensus 269 ~~~~dv~~yd~ 279 (685)
..-.|+|+|.+
T Consensus 502 Ghp~dlY~~ri 512 (670)
T 3ju4_A 502 GHPSDLYCYKM 512 (670)
T ss_dssp CCCCEEEEEEE
T ss_pred CCCcceEEEEE
Confidence 34568999864
No 340
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=22.69 E-value=5.4e+02 Score=25.01 Aligned_cols=206 Identities=10% Similarity=0.047 Sum_probs=107.1
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCCCCcceeEEEEEC-CEEEEEcCccCCCC
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPN 148 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyvfGG~~~s~~ 148 (685)
.-..++..|. ++.||++... -+.++.+|+....++.++... ..-..+++..+ +.+||.--.
T Consensus 28 ~lSGla~~~~-~~~L~aV~d~---------~~~I~~ld~~g~v~~~i~l~g---~~D~EGIa~~~~g~~~vs~E~----- 89 (255)
T 3qqz_A 28 NISSLTWSAQ-SNTLFSTINK---------PAAIVEMTTNGDLIRTIPLDF---VKDLETIEYIGDNQFVISDER----- 89 (255)
T ss_dssp CEEEEEEETT-TTEEEEEEET---------TEEEEEEETTCCEEEEEECSS---CSSEEEEEECSTTEEEEEETT-----
T ss_pred CcceeEEeCC-CCEEEEEECC---------CCeEEEEeCCCCEEEEEecCC---CCChHHeEEeCCCEEEEEECC-----
Confidence 3455666664 4789998763 136999999988888875422 13345555554 555554211
Q ss_pred CccccccCeEEEEECCCCc--EE--EcccC-CCCCCCccceEEEE---CCEEEEEccccCCCCceeeeceEEEEEc--CC
Q 005655 149 QERFHHYKDFWMLDLKTNQ--WE--QLNLK-GCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQ 218 (685)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~--W~--~~~~~-g~P~~Rsgh~~v~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t 218 (685)
.+.+++|++.... |. .+... +......+.-..++ ++.||+.-... ...+|.|+- .+
T Consensus 90 ------~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~--------p~~i~~~~g~~~~ 155 (255)
T 3qqz_A 90 ------DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN--------PIEVYKVNGLLSS 155 (255)
T ss_dssp ------TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS--------SEEEEEEESTTCS
T ss_pred ------CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC--------CceEEEEcccccC
Confidence 2457777765544 42 22211 11234555555555 45899975532 236777772 22
Q ss_pred CceEEeccCC-CCCCCCCccceeEEEe--CCEEEEEecccCCCCcccCCCCCCceeeeEEEEeCCCceeEEeecC-CC--
Q 005655 219 FKWQEIKPRF-GSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-GM-- 292 (685)
Q Consensus 219 ~~W~~v~~~~-~~~~P~~Rs~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~-g~-- 292 (685)
..-+.+.... .+. ...+--.++++. .+.+||+..-+.. +..||+....-..+.-. +.
T Consensus 156 ~~l~i~~~~~~~~~-~~~~d~S~l~~dp~tg~lliLS~~s~~----------------L~~~d~~g~~~~~~~L~~g~~~ 218 (255)
T 3qqz_A 156 NELHISKDKALQRQ-FTLDDVSGAEFNQQKNTLLVLSHESRA----------------LQEVTLVGEVIGEMSLTKGSRG 218 (255)
T ss_dssp SCCEEEECHHHHHT-CCSSCCCEEEEETTTTEEEEEETTTTE----------------EEEECTTCCEEEEEECSTTGGG
T ss_pred Cceeeecchhhccc-cccCCceeEEEcCCCCeEEEEECCCCe----------------EEEEcCCCCEEEEEEcCCccCC
Confidence 1111111100 000 111112233333 7889999765543 77888776533333221 10
Q ss_pred -CCCCcceeEEEEE-CCeEEEecceecccCCccccccccCCcEEEEECC
Q 005655 293 -PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (685)
Q Consensus 293 -~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (685)
....+...++++- +|.|||+.= -|-+|+|...
T Consensus 219 l~~~~~qpEGia~d~~G~lyIvsE---------------~n~~y~f~~~ 252 (255)
T 3qqz_A 219 LSHNIKQAEGVAMDASGNIYIVSE---------------PNRFYRFTPQ 252 (255)
T ss_dssp CSSCCCSEEEEEECTTCCEEEEET---------------TTEEEEEEC-
T ss_pred cccccCCCCeeEECCCCCEEEEcC---------------CceEEEEEec
Confidence 0111234566665 678999841 3668888754
No 341
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=22.31 E-value=93 Score=23.77 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=27.9
Q ss_pred hhHHhhccHHHHHHHHHhcCCCCcchhhHhhHHHHHHHHHHhh
Q 005655 604 LKDFYRRTSMYWQMAAHEHTQHTGKELRKDGFDLAEARYRELK 646 (685)
Q Consensus 604 l~~f~~rt~~~w~~~~~~~~~~~~k~l~~~~f~la~~r~~e~~ 646 (685)
.+-||.|++.||..++... =.=..+|+.+-+++||..
T Consensus 10 Y~~~frRnS~y~~~i~~ga------f~fe~~~d~~~d~iw~~~ 46 (62)
T 1pp9_J 10 YSLLFRRTSTFALTIVVGA------LFFERAFDQGADAIYEHI 46 (62)
T ss_dssp HHHTTSSHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHH------HHHHHHHhHHHHHHHHhc
Confidence 4678999999998887542 233358999999999864
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=21.75 E-value=1.8e+02 Score=29.86 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=49.0
Q ss_pred ceEEEEEcCCC--ceEEeccCCCCCCCCCccceeEEEeCCEEEEEec-ccCCCCcccCCCCCCceeeeEEEEeCCCceeE
Q 005655 209 NDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG-YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (685)
Q Consensus 209 ~dv~~yD~~t~--~W~~v~~~~~~~~P~~Rs~~s~~~~~~~Iyv~GG-~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (685)
..|+.+|..+. .|+.-.... . |.-.........++.+|++.. .++. ++.|++.+..|.
T Consensus 20 G~l~Ald~~tG~~~W~~~~~~~-~--p~~~~~~~~~~~~~~~~vv~p~~dG~----------------l~a~~~~~G~~~ 80 (339)
T 2be1_A 20 GGLHAVDRRNGHIIWSIEPENF-Q--PLIEIQEPSRLETYETLIIEPFGDGN----------------IYYFNAHQGLQK 80 (339)
T ss_dssp SCEEEEETTTTEEEEEECGGGS-C--CSEECCCSCTTTSSEEEEECCSTTTE----------------EEEEETTTEEEE
T ss_pred CeEEEEECCCCcEEEEecCCcc-C--CcEEecCCccccCCcEEEEEECCCCE----------------EEEEECCCCcEE
Confidence 46788887765 487644310 0 110000001113556666653 3333 788888776554
Q ss_pred EeecCCC--CCCCcceeEEEEE-------CCeEEEecceecccCCccccccccCCcEEEEECCCCcE
Q 005655 286 KVKKIGM--PPGPRAGFSMCVH-------KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (685)
Q Consensus 286 ~~~~~g~--~P~~R~g~s~~~~-------~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (685)
.....+. .-+|..+.+.-++ .+-.+++|+..+ .|+++|+.+++-
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g--------------~l~ald~~tG~~ 133 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRT--------------IMYTINMLNGEI 133 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEE--------------EEEEEETTTCCE
T ss_pred eeeccccceeccccccCCCceeecccccccCCEEEEEecCC--------------EEEEEECCCCcE
Confidence 3221100 0112222222223 555666666643 499999988743
No 343
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=20.13 E-value=6e+02 Score=28.17 Aligned_cols=157 Identities=13% Similarity=0.156 Sum_probs=79.9
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCceeeeccEEEEEcCCCcEEEecCCCCC---CCcceeEEEEE--C---CEEEEEc
Q 005655 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP---PPRSAHQAVSW--K---NYLYIFG 141 (685)
Q Consensus 70 ~~~s~~~~p~~~~~L~vfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P---~~R~~ha~v~~--~---~~iyvfG 141 (685)
.|+|+.+. .+ .+|+|.- +. ......+++|+...+.|........+ ....++++++. + ..-+|+|
T Consensus 167 ~G~Sa~~~---~d-~~v~GAp---G~-~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvG 238 (597)
T 3v4v_A 167 AGISSFYT---KD-LIVMGAP---GS-SYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGG 238 (597)
T ss_dssp BTSSEEEC---SS-EEEEEET---TH-HHHTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEE
T ss_pred CceeeEec---CC-ceEEccc---cc-cccccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEe
Confidence 56776666 34 5677752 10 01224678899999999754322111 24566777664 2 2356666
Q ss_pred CccCCCCCccccccCeEEEEECCCCcEEEcccC-CC-CCCCccceEEEEC----C--EEEEEccccCCCCceeeeceEEE
Q 005655 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GC-PSPRSGHRMVLYK----H--KIIVFGGFYDTLREVRYYNDLYV 213 (685)
Q Consensus 142 G~~~s~~~~~~~~~~dv~~yD~~t~~W~~~~~~-g~-P~~Rsgh~~v~~~----~--~lyv~GG~~~~~~~~~~~~dv~~ 213 (685)
.-.. .+...+++|....+.|...... +. ...+.|.++++.+ + -| ++|.-.... ......+++
T Consensus 239 AP~~-------~~~G~V~v~~~~~~~~~~~~~l~G~~~g~~fG~sva~~D~ngDG~~Dl-vVGap~~~~--~~~~G~v~v 308 (597)
T 3v4v_A 239 APQH-------EQIGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDL-LVGAPMQST--IREEGRVFV 308 (597)
T ss_dssp ETTG-------GGTCEEEEEEECSSSEEEEEEEECSSTTCCTTSEEEEECTTCSSSCEE-EEEETTCCS--SSCCCEEEE
T ss_pred cccc-------cCCceEEEEecCCCceeEEEEecccccCCCCcceEEEEeeCCCCCceE-EEEcccccC--CCcCCeEEE
Confidence 4211 1346788898777789765431 11 3445677777652 2 35 555422110 011345666
Q ss_pred EEcC-CCc--eEEeccCCCCCCCCCccceeEEEe
Q 005655 214 FDLD-QFK--WQEIKPRFGSMWPSPRSGFQFFVY 244 (685)
Q Consensus 214 yD~~-t~~--W~~v~~~~~~~~P~~Rs~~s~~~~ 244 (685)
|--. ... |......+.......++|++++..
T Consensus 309 y~~~g~g~~~~~~~~~l~g~~~~~~~FG~sva~~ 342 (597)
T 3v4v_A 309 YINSGSGAVMNAMETNLVGSDKYAARFGESIVNL 342 (597)
T ss_dssp EEECSSSSCEECCSSCBCTTCCTTCCTTSCEECC
T ss_pred EEECCCCcceeccceEEeCCcccccccccccccc
Confidence 6332 222 433222222111346777777643
Done!