BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005656
(685 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
V +S GNFAV + + +NLQ+G + +L H +V+ VA N
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL--------GHTKDVLSVAFSPDN 121
Query: 265 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 317
++S G ++VW+ KG R + W S V+ ++ + D ++
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDW---VSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 377
+++D+ R+V +GHT+ +T S DG SS DG R+WD+ + +
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 378 SITALSLSPN 387
I + SPN
Sbjct: 239 PINQICFSPN 248
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLM 62
V ++AFS D + ++ SG + +WN++ + ++ R AH + + + F + PV++
Sbjct: 112 VLSVAFSPDNRQIV-SGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIV 170
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122
S DN +K+W T RL+ GH+ + +G S+ +D RL+ +
Sbjct: 171 SGGWDNLVKVWDLATG----RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Query: 123 QDQQSRELS 131
+ + E++
Sbjct: 227 KGEALSEMA 235
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 30 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 89
+ L RRL E H + + N +SAS D+S+++W + L
Sbjct: 56 YGLPDRRL-----EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL---- 106
Query: 90 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
GH+ L + F + R I+S G+D A R+++V
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV 138
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 329 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
R+ EGH+ ++D S +G + +S+ D SLR+W++
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL 96
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 222 AGGW---IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 278
+GGW ++ ++L +G D+ +NY V V +L S+ G ++
Sbjct: 171 SGGWDNLVKVWDLATGRL---VTDLKGHTNY-----VTSVTVSPDGSLCASSDKDGVARL 222
Query: 279 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV----VALRMVRKFEGH 334
WD + S G + +I + N A + IR+FD+ + + + + +G
Sbjct: 223 WDLTKGEALSEMAAGAPINQICF-SPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQG- 280
Query: 335 TDRITDFC----FSEDGKWLLSSGMDGSLRIWDV 364
+ +I C +S DG L S D +R+W V
Sbjct: 281 SKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
V+ +S+ G FA+ G+ G + ++L +G+S R H +V+ VA N
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--------RRFVGHTKDVLSVAFSLDN 484
Query: 265 TLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIR 318
++SA IK+W+ G + E G S V+ + + + + + D ++
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 378
++++ ++ GHT ++ S DG S G DG + +WD+ +++ ++ +
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
Query: 379 ITALSLSPNMDVLATAHVDQNGVYLW 404
I AL SPN L A ++G+ +W
Sbjct: 605 IHALCFSPNRYWLCAAT--EHGIKIW 628
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 80/387 (20%), Positives = 127/387 (32%), Gaps = 107/387 (27%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEK---------RRLQSVIREAHDNAIISLHFF 55
VTA+A D ++ S + I +W L K RRL D + S F
Sbjct: 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF 444
Query: 56 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 115
A +S S D +++W R + GH+ L + F + R I+SA +DR
Sbjct: 445 A-----LSGSWDGELRLWDLAAGVSTRRFV----GHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 116 FRLFSVIQDQQS--RELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTC 173
+L++ + + + E + H RDW + V
Sbjct: 496 IKLWNTLGECKYTISEGGEGH------------------------------RDWVSCVRF 525
Query: 174 HMDTAQ-----------AYVWRLQNFVLGEHILRPCPENPTA-VKACTISACGNFAVLGT 221
+T Q VW L N LR T V +S G+ G
Sbjct: 526 SPNTLQPTIVSASWDKTVKVWNLSNCK-----LRSTLAGHTGYVSTVAVSPDGSLCASGG 580
Query: 222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281
G + ++L G ++ V+ C S N + A IK+WD
Sbjct: 581 KDGVVLLWDLAEG----------KKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDL 630
Query: 282 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF 341
+ + ++ +DL + L A + T R +
Sbjct: 631 ESK-------------------------SIVEDLKVDL-KAEAEKADNSGPAATKRKVIY 664
Query: 342 C----FSEDGKWLLSSGMDGSLRIWDV 364
C +S DG L S DG +R+W +
Sbjct: 665 CTSLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 251
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVS 276
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG-- 306
AH+ V V + +L++S+ Y G ++WD G+ LK+ + V V NG
Sbjct: 169 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 228
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRI 361
+LA D+ ++L+D + ++ + GH + +C FS GKW++S D + I
Sbjct: 229 ILAATLDN-TLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 285
Query: 362 WDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 408
W++ + + H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 286 WNLQTKEIVQKLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 334
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 174 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 230
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 231 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 284
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 285 IWNL----QTKEIVQK 296
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 89 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 146
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 147 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 124 DQQSREL 130
Q + L
Sbjct: 203 GQCLKTL 209
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 91
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 149
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 400
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 150 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 183
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 333 GHTDRITDFCFSEDGKWLLSSGMDGSLRIW---DVILARQIDAIHVDVSITALSLSPNMD 389
GHT ++ FS +G+WL SS D ++IW D + I + +S A S N+
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 390 VLATAHVDQNGVYLW 404
V A+ D + +W
Sbjct: 103 VSAS---DDKTLKIW 114
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 98
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 138
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 139 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 193 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 246 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 304
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 75 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 134
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 253
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVS 278
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG-- 306
AH+ V V + +L++S+ Y G ++WD G+ LK+ + V V NG
Sbjct: 171 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 230
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRI 361
+LA D+ ++L+D + ++ + GH + +C FS GKW++S D + I
Sbjct: 231 ILAATLDN-TLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 287
Query: 362 WDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 408
W++ + + H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 288 WNLQTKEIVQKLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 336
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 176 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 232
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 233 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 286
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 287 IWNL----QTKEIVQK 298
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 91 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 148
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 149 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 124 DQQSREL 130
Q + L
Sbjct: 205 GQCLKTL 211
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 93
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 151
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 400
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 152 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 185
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 333 GHTDRITDFCFSEDGKWLLSSGMDGSLRIW---DVILARQIDAIHVDVSITALSLSPNMD 389
GHT ++ FS +G+WL SS D ++IW D + I + +S A S N+
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 390 VLATAHVDQNGVYLW 404
V A+ D + +W
Sbjct: 105 VSAS---DDKTLKIW 116
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 100
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 140
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 141 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 195 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 248 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 306
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 296 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355
+ ++++H V ++ + ++D I+++D R +GHTD + D F GK L S
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 356 DGSLRIWDVILARQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLW 404
D ++++WD I +H D +++++S+ PN D + +A D+ + +W
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT-IKMW 219
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLL 308
H V V ++M+SA IKVWD++ D + + V+ I + LL
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 309 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368
A+ + D+ I+L+D +R GH ++ +G ++S+ D ++++W+V
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 369 QIDAIHVDVSITALSLSPNMD--VLATAHVDQNGVYLWV 405
+ + + PN D ++A+ DQ V +WV
Sbjct: 226 CVKTFTGHREWVRM-VRPNQDGTLIASCSNDQT-VRVWV 262
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76
++ S + I +W+ E + ++ H +++ + F + +L S SAD +IK+W F
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
+ +R GH + NG HI+SA +D+ +++ V
Sbjct: 181 GFE----CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
+V ++F G+ LLAS ++ I +W+ + + HD+ + S+ N ++S
Sbjct: 152 SVQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVS 209
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
AS D +IKMW T ++ +GH +R +G I S D+ R++ V
Sbjct: 210 ASRDKTIKMWEVQTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 124 DQQSRELSQ-RHVAK 137
+ EL + RHV +
Sbjct: 266 KECKAELREHRHVVE 280
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV 304
ER+ H V ++ D + L+ S IK+WDF+G + V V
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 202
Query: 305 NG-LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
NG + + + D I++++V V+ F GH + + ++DG + S D ++R+W
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW- 261
Query: 364 VILARQIDA 372
V+ ++ A
Sbjct: 262 VVATKECKA 270
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
V + F S G+ +L S A + +W+ + +R + AH++ + SL F P +++
Sbjct: 341 VRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTG 398
Query: 65 SADNSIKMW 73
S D ++K+W
Sbjct: 399 SVDQTVKVW 407
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 247 SNYAHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFK---------GRDLKSRWEVGC 294
S+Y+ E G + ++S IK+WD G D W G
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD---NWVRG- 343
Query: 295 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 354
+++H + + ADD +R++D R ++ H +T F + ++++
Sbjct: 344 ----VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 355 MDGSLRIWD 363
+D ++++W+
Sbjct: 400 VDQTVKVWE 408
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/105 (17%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 16 PLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 74
P L SG+ I +W++ L +++ HDN + + F + ++S + D ++++W
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
+ + R ++ + H + F+ ++++ D+ +++
Sbjct: 367 YK----NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H + + + F V++SAS D +IK+W ++T D R GH+ I F +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFDHS 161
Query: 104 GRHILSAGQDRAFRLF 119
G+ + S D +L+
Sbjct: 162 GKLLASCSADMTIKLW 177
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 235
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVS 260
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 85 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 74 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 318 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 408
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 158 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 214
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 215 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 268
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 269 IWNL----QTKEIVQK 280
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 73 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 130
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 131 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 124 DQQSREL 130
Q + L
Sbjct: 187 GQCLKTL 193
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 400
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 134 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 167
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 82
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 122
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 123 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 177 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 288
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 51 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 229
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVS 254
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/339 (19%), Positives = 139/339 (41%), Gaps = 56/339 (16%)
Query: 85 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 67
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 68 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 105
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 157
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 216
Query: 318 RLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C FS GKW++S D + IW++ +
Sbjct: 217 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 275 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 312
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 152 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 208
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 209 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 262
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 263 IWNL----QTKEIVQK 274
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 67 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 124
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 125 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 124 DQQSREL 130
Q + L
Sbjct: 181 GQCLKTL 187
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 127
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 400
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 128 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 161
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 76
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 116
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 117 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 171 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 282
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 235
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVS 260
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/339 (19%), Positives = 139/339 (41%), Gaps = 56/339 (16%)
Query: 85 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 74 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 318 RLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C FS GKW++S D + IW++ +
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 158 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 214
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 215 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 268
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 269 IWNL----QTKEIVQK 280
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 73 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 130
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 131 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 124 DQQSREL 130
Q + L
Sbjct: 187 GQCLKTL 193
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 400
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 134 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 167
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 82
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 122
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 123 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 177 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 288
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 51 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 229
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVS 254
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 85 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 67
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 68 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 105
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 157
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 216
Query: 318 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 217 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 275 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 312
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 152 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 208
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 209 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 262
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 263 IWNL----QTKEIVQK 274
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 67 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 124
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 125 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 124 DQQSREL 130
Q + L
Sbjct: 181 GQCLKTL 187
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 127
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 400
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 128 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 161
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 76
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 116
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 117 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 171 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 282
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 52 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 111
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 112 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 171
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 172 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 230
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVS 255
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/339 (19%), Positives = 139/339 (41%), Gaps = 56/339 (16%)
Query: 85 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 68
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 69 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 106
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 107 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 158
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 217
Query: 318 RLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C FS GKW++S D + IW++ +
Sbjct: 218 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 276 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 313
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 153 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 209
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 210 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 263
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 264 IWNL----QTKEIVQK 275
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 68 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 125
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 126 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 124 DQQSREL 130
Q + L
Sbjct: 182 GQCLKTL 188
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 70
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 128
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 400
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 129 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 162
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 77
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 117
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 118 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 171
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 172 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 225 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 283
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 47 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 106
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 166
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 167 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 225
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVS 250
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 85 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 63
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 64 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 101
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 102 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 153
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 212
Query: 318 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 213 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 271 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 308
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 148 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 204
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 205 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 258
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 259 IWNL----QTKEIVQK 270
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 63 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 120
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 121 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 124 DQQSREL 130
Q + L
Sbjct: 177 GQCLKTL 183
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 65
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 123
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 400
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 124 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 157
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 72
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 112
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 113 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 166
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 167 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 220 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 278
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 68 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 127
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 188 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 246
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVS 271
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 15/170 (8%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG-- 306
AH+ V V + +L++S+ Y G ++WD G+ LK+ + V V NG
Sbjct: 164 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 223
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRI 361
+LA D+ ++L+D + ++ + GH + +C + GKW++S D + I
Sbjct: 224 ILAATLDN-TLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 280
Query: 362 WDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
W++ + + H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 281 WNLQTKEIVQKLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 329
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 169 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 225
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 226 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 279
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 280 IWNL----QTKEIVQK 291
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 84 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 141
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 142 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 124 DQQSREL 130
Q + L
Sbjct: 198 GQCLKTL 204
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 86
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 144
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 400
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 145 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 178
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 333 GHTDRITDFCFSEDGKWLLSSGMDGSLRIW---DVILARQIDAIHVDVSITALSLSPNMD 389
GHT ++ FS +G+WL SS D ++IW D + I + +S A S N+
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 390 VLATAHVDQNGVYLW 404
V A+ D + +W
Sbjct: 98 VSAS---DDKTLKIW 109
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 93
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 133
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 134 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 188 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 241 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 299
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 56 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 115
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 116 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 175
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 176 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 234
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVS 259
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/339 (19%), Positives = 139/339 (41%), Gaps = 56/339 (16%)
Query: 85 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 72
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 73 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 110
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 111 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 162
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 221
Query: 318 RLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C FS GKW++S D + IW++ +
Sbjct: 222 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 280 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 317
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 157 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 213
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 214 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 267
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 268 IWNL----QTKEIVQK 279
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 72 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 129
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 130 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 124 DQQSREL 130
Q + L
Sbjct: 186 GQCLKTL 192
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 81
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 121
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 122 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 175
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 176 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 229 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 287
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 235
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVS 260
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/339 (19%), Positives = 139/339 (41%), Gaps = 56/339 (16%)
Query: 85 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 74 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 318 RLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C FS GKW++S D + IW++ +
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 158 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 214
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 215 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 268
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 269 IWNL----QTKEIVQK 280
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 73 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 130
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 131 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 124 DQQSREL 130
Q + L
Sbjct: 187 GQCLKTL 193
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 82
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 122
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 123 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 177 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 288
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 50 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 109
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 170 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 228
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVS 253
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 85 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 66
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 67 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 104
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 105 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 156
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 215
Query: 318 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 216 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 274 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 311
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 151 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 207
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 208 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 261
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 262 IWNL----QTKEIVQK 273
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 66 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 123
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 124 GSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 124 DQQSREL 130
Q + L
Sbjct: 180 GQCLKTL 186
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 68
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 126
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 400
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 127 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 160
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 75
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 115
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 116 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 170 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 223 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV-YIWNLQTKEIVQKLQGHTDVV 281
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 232
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVS 257
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/329 (19%), Positives = 134/329 (40%), Gaps = 55/329 (16%)
Query: 85 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 71 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 108
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 160
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 219
Query: 318 RLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C FS GKW++S D + IW++ +
Sbjct: 220 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQN 399
+ H DV I+ + P +++A+A ++ +
Sbjct: 278 LQGHTDVVIST-ACHPTENIIASAALEND 305
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 155 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 211
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 212 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 265
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 266 IWNL----QTKEIVQK 277
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 70 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 127
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 128 GSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 124 DQQSREL 130
Q + L
Sbjct: 184 GQCLKTL 190
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 276 IKVWD-FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 334
IK+W + G+ K+ + + + + LL + +DD ++++DV + + ++ +GH
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 335 TDRITDFC--FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLA 392
++ + FC F+ ++S D S+RIWDV + + +L + D ++
Sbjct: 110 SNYV--FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-----------TLPAHSDPVS 156
Query: 393 TAHVDQNG 400
H +++G
Sbjct: 157 AVHFNRDG 164
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 333 GHTDRITDFCFSEDGKWLLSSGMDGSLRIW---DVILARQIDAIHVDVSITALSLSPNMD 389
GHT ++ FS +G+WL SS D ++IW D + I + +S A S N+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 390 VLATAHVDQNGVYLW 404
V A+ D + +W
Sbjct: 84 VSAS---DDKTLKIW 95
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 79
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 119
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 120 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 174 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 285
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 232
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVS 257
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG-- 306
AH+ V V + +L++S+ Y G ++WD G+ LK+ + V V NG
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 209
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRI 361
+LA D+ ++L+D + ++ + GH + +C FS GKW++S D + I
Sbjct: 210 ILAATLDN-TLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 362 WDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
W++ + + H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 267 WNLQTKEIVQKLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 155 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 211
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 212 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 265
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 266 IWNL----QTKEIVQK 277
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 70 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 127
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 128 GSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 124 DQQSREL 130
Q + L
Sbjct: 184 GQCLKTL 190
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 276 IKVWD-FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 334
IK+W + G+ K+ + + + + LL + +DD ++++DV + + ++ +GH
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 335 TDRITDFC--FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLA 392
++ + FC F+ ++S D S+RIWDV + + +L + D ++
Sbjct: 110 SNYV--FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-----------TLPAHSDPVS 156
Query: 393 TAHVDQNG 400
H +++G
Sbjct: 157 AVHFNRDG 164
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367
LA + D +I+++ + + GH I+D +S D L+S+ D +L+IWDV
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 368 RQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM 409
+ + + + + + +P +++ + D++ V +W +C+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVKTGKCL 145
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 333 GHTDRITDFCFSEDGKWLLSSGMDGSLRIW---DVILARQIDAIHVDVSITALSLSPNMD 389
GHT ++ FS +G+WL +S D ++IW D + I + +S A S N+
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 390 VLAT 393
V A+
Sbjct: 84 VSAS 87
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L ++SAD IK+W DG + + SGH + + ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 79
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 119
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 120 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 174 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 285
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 232
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVS 257
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 155 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 211
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 212 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNLVY 265
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 266 IWNL----QTKEIVQK 277
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/329 (19%), Positives = 134/329 (40%), Gaps = 55/329 (16%)
Query: 85 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 71 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 108
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 160
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 219
Query: 318 RLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C FS GKW++S D + IW++ +
Sbjct: 220 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQN 399
+ H DV I+ + P +++A+A ++ +
Sbjct: 278 LQGHTDVVIST-ACHPTENIIASAALEND 305
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 70 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 127
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T + L+ HS P + F +G I+S+ D R++
Sbjct: 128 GSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 124 DQQSREL 130
Q + L
Sbjct: 184 GQCLKTL 190
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 276 IKVWD-FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 334
IK+W + G+ K+ + + + + LL + +DD ++++DV + + ++ +GH
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 335 TDRITDFC--FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLA 392
++ + FC F+ ++S D S+RIWDV + + +L + D ++
Sbjct: 110 SNYV--FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-----------TLPAHSDPVS 156
Query: 393 TAHVDQNG 400
H +++G
Sbjct: 157 AVHFNRDG 164
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 79
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 119
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 120 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 174 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 338
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 285
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
+V +AFS DGQ +AS + + +WN + LQ++ H +++ + F ++ + S
Sbjct: 387 SVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDDQTIAS 443
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
AS D ++K+W + + +LL+ +GHS+ + F +G+ I SA D+ +L+
Sbjct: 444 ASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
+V +AFS DGQ +AS + + +WN + LQ++ H +++ + F + + S
Sbjct: 469 SVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIAS 525
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
AS D ++K+W + + +LL+ +GHS+ + F +G+ I SA D+ +L+
Sbjct: 526 ASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
+V +AFS DGQ +AS + + +WN + LQ++ H +++ + F + + S
Sbjct: 223 SVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVNGVAFRPDGQTIAS 279
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
AS D ++K+W + + +LL+ +GHS+ + F +G+ I SA D+ +L+
Sbjct: 280 ASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
+V +AFS DGQ +AS + + +WN + LQ++ H +++ + F + + S
Sbjct: 59 SVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIAS 115
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
AS D ++K+W + + +LL+ +GHS+ + F +G+ I SA D+ +L+
Sbjct: 116 ASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
+V +AFS DGQ +AS + + +WN + LQ++ H +++ + F + + S
Sbjct: 141 SVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIAS 197
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
AS D ++K+W + + +LL+ +GHS+ + F +G+ I SA D+ +L+
Sbjct: 198 ASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 238 GSYLDMSERSNY-AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 296
GS++ + ER+ AH+ V GVA + SA +K+W+ G+ L++ S+
Sbjct: 1 GSHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 60
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
+ + +A+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Query: 357 GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407
++++W+ S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLW-NR 168
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
+V +AFS DGQ +AS + + +WN + LQ++ H +++ + F + + S
Sbjct: 346 SVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIAS 402
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
AS D ++K+W + + +LL+ +GHS+ + F + + I SA D+ +L+
Sbjct: 403 ASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
+V +AF DGQ +AS + + +WN + LQ++ H +++ + F + + S
Sbjct: 264 SVNGVAFRPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIAS 320
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
AS D ++K+W + + + L+ +GHS+ + F +G+ I SA D+ +L+
Sbjct: 321 ASDDKTVKLW-----NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 309
H+ V GVA + SA +K+W+ G+ L++ S+ + + +A
Sbjct: 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIA 278
Query: 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 369
+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D ++++W+
Sbjct: 279 SASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL 337
Query: 370 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407
S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLW-NR 373
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 309
H+ V GVA + SA +K+W+ G+ L++ S+ + + +A
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIA 360
Query: 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 369
+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D ++++W+
Sbjct: 361 SASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 419
Query: 370 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407
S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLW-NR 455
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 309
H+ V GVA + SA +K+W+ G+ L++ S+ + + + +A
Sbjct: 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIA 442
Query: 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 369
+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D ++++W+
Sbjct: 443 SASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 501
Query: 370 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407
S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLW-NR 537
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 309
H+ V GVA + SA +K+W+ G+ L++ S+ + + +A
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA 155
Query: 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 369
+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D ++++W+
Sbjct: 156 SASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 214
Query: 370 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407
S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLW-NR 250
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 309
H+ V GVA + SA +K+W+ G+ L++ S+ + + +A
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 237
Query: 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 369
+ +DD ++L++ ++++ GH+ + F DG+ + S+ D ++++W+
Sbjct: 238 SASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLL 296
Query: 370 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407
S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLW-NR 332
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 33 EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 92
E+ RL EAH +++ + F + + SAS D ++K+W + + +LL+ +GHS
Sbjct: 8 ERNRL-----EAHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHS 57
Query: 93 APPLCIRFYANGRHILSAGQDRAFRLF 119
+ + F +G+ I SA D+ +L+
Sbjct: 58 SSVWGVAFSPDGQTIASASDDKTVKLW 84
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 309
H+ V GVA + SA +K+W+ G+ L++ S+ + + +A
Sbjct: 465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 524
Query: 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D ++++W+
Sbjct: 525 SASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
V IS+ G FA+ G+ G + ++L +G + R H +V+ VA S N
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTT--------TRRFVGHTKDVLSVAFSSDN 140
Query: 265 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 317
++S IK+W+ G + S W S V+ + N ++ + D ++
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 377
+++++ ++ GHT + S DG S G DG +WD+ + + +
Sbjct: 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 257
Query: 378 SITALSLSPNMDVLATA 394
I AL SPN L A
Sbjct: 258 IINALCFSPNRYWLCAA 274
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/294 (19%), Positives = 104/294 (35%), Gaps = 57/294 (19%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFANE 58
G VT +A + ++ S + I +W L + I + H + + + ++
Sbjct: 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 98
Query: 59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118
+S S D ++++W T R + GH+ L + F ++ R I+S +D+ +L
Sbjct: 99 QFALSGSWDGTLRLWDLTTGTTTRRFV----GHTKDVLSVAFSSDNRQIVSGSRDKTIKL 154
Query: 119 FSV-------IQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVV 171
++ +QD+ E P+I V
Sbjct: 155 WNTLGVCKYTVQDESHSEW----------VSCVRFSPNSSNPII---------------V 189
Query: 172 TCHMDTAQAYVWRLQNFVL-GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN 230
+C D VW L N L HI + + T+S G+ G G ++
Sbjct: 190 SCGWDKL-VKVWNLANCKLKTNHI-----GHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Query: 231 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 284
L G + G+++ C S N + A IK+WD +G+
Sbjct: 244 LNEG----------KHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK 287
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 329 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
R GH+ ++D S DG++ LS DG+LR+WD+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV ++ H+D ++ F+ DG ++SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLKT 232
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVS 257
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/339 (19%), Positives = 139/339 (41%), Gaps = 55/339 (16%)
Query: 84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+ +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 71 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 108
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G M ++ AH+ V V
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------MCLKTLPAHSDPVSAVHF 160
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 317
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 219
Query: 318 RLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRIWDVILARQIDA 372
+L+D + ++ + GH + +C FS GKW++S D + IW++ +
Sbjct: 220 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 373 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 278 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 155 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 211
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN++K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 212 AATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNMVY 265
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 266 IWNL----QTKEIVQK 277
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 70 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 127
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W D G L+ HS P + F +G I+S+ D R++
Sbjct: 128 GSFDESVRIW--DVKTG--MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 124 DQQSREL 130
Q + L
Sbjct: 184 GQCLKTL 190
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 130
Query: 356 DGSLRIWDV 364
D S+RIWDV
Sbjct: 131 DESVRIWDV 139
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 116/302 (38%), Gaps = 47/302 (15%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 79
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 119
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ + L+ P + V A + G+ V +
Sbjct: 120 PQS--NLIVSGSFDESVRIWDVKTGMC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 174 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNG--LLATVADDLVIRLFDVVALRMVRKFEGHTD 336
G+ LK+ + E C V G + + ++D ++ ++++ +V+K +GHTD
Sbjct: 227 GKCLKTYTGHKNEKYCIFANF---SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Query: 337 RI 338
+
Sbjct: 284 VV 285
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
V IS+ G FA+ G+ G + ++L +G + R H +V+ VA S N
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDN 117
Query: 265 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 317
++S IK+W+ G + S W S V+ + N ++ + D ++
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 377
+++++ ++ GHT + S DG S G DG +WD+ + + +
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 234
Query: 378 SITALSLSPNMDVLATA 394
I AL SPN L A
Sbjct: 235 IINALCFSPNRYWLCAA 251
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/294 (19%), Positives = 104/294 (35%), Gaps = 57/294 (19%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFANE 58
G VT +A + ++ S + I +W L + I + H + + + ++
Sbjct: 16 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 75
Query: 59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118
+S S D ++++W T R + GH+ L + F ++ R I+S +D+ +L
Sbjct: 76 QFALSGSWDGTLRLWDLTTGTTTRRFV----GHTKDVLSVAFSSDNRQIVSGSRDKTIKL 131
Query: 119 FSV-------IQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVV 171
++ +QD+ E P+I V
Sbjct: 132 WNTLGVCKYTVQDESHSEW----------VSCVRFSPNSSNPII---------------V 166
Query: 172 TCHMDTAQAYVWRLQNFVL-GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN 230
+C D VW L N L HI + + T+S G+ G G ++
Sbjct: 167 SCGWDKL-VKVWNLANCKLKTNHI-----GHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Query: 231 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 284
L G + G+++ C S N + A IK+WD +G+
Sbjct: 221 LNEG----------KHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK 264
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 329 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
R GH+ ++D S DG++ LS DG+LR+WD+
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 92
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 16/205 (7%)
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
++ + L+ + + D +R++DV ++ H+D ++ F+ DG ++SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 357 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM-- 409
G RIWD + + + D + ++ + SPN + A +D N + LW +C+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NDLKLWDYSKGKCLKT 232
Query: 410 FSGDSNID-------SYASGKEIVS 427
++G N S GK IVS
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVS 257
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/340 (19%), Positives = 139/340 (40%), Gaps = 57/340 (16%)
Query: 84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 143
L+ +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 144 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200
I + W N++ D +W + + L+
Sbjct: 71 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 108
Query: 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260
+ V C + N V G+ + +++++G M ++ AH+ V V
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------MCLKTLPAHSDPVSAVHF 160
Query: 261 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG---LLATVADDLV 316
+ +L++S+ Y G ++WD G+ LK+ + V V NG L AT+ +DL
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL- 219
Query: 317 IRLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQID 371
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 220 -KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Query: 372 AI--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 408
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 277 KLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 20/136 (14%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIIS-LHFFANEPVLM 62
V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN +S + F N ++
Sbjct: 155 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYIL 211
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFR 117
+A+ DN +K+W D + G + L+ +GH CI +AN G+ I+S +D
Sbjct: 212 AATLDNDLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSVTGGKWIVSGSEDNMVY 265
Query: 118 LFSVIQDQQSRELSQR 133
++++ Q++E+ Q+
Sbjct: 266 IWNL----QTKEIVQK 277
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++ +A+SSD LL S + + IW++ + ++ H N + +F +++S
Sbjct: 70 GISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVS 127
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S D S+++W T L+ HS P + F +G I+S+ D R++
Sbjct: 128 GSFDESVRIWDVKTG----MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 124 DQQSREL 130
Q + L
Sbjct: 184 GQCLKTL 190
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 246 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 297
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 355
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 130
Query: 356 DGSLRIWDV 364
D S+RIWDV
Sbjct: 131 DESVRIWDV 139
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 117/302 (38%), Gaps = 47/302 (15%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 79
Query: 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 163
++SA D+ +++ V + + L F C
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 119
Query: 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223
+ N++ +W ++ + L+ P + V A + G+ V +
Sbjct: 120 PQS--NLIVSGSFDESVRIWDVKTGMC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 282
G ++ SG + +D N V V +++A D+K+WD+ K
Sbjct: 174 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK 226
Query: 283 GRDLKS----RWEVGCSLVKIVYHRVNG--LLATVADDLVIRLFDVVALRMVRKFEGHTD 336
G+ LK+ + E C V G + + ++D ++ ++++ +V+K +GHTD
Sbjct: 227 GKCLKTYTGHKNEKYCIFANF---SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Query: 337 RI 338
+
Sbjct: 284 VV 285
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
V+ CT++A G +A+ + + +++ +G + ++ H +V+ V D
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
+++IS IKVW KG+ L + W S V++V + + + + +D
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
+++ +++ ++ F GH I S DG + S+G DG + +W++ + + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 376 DVSITALSLSPNMDVLATA 394
+ +L+ SPN LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 127/340 (37%), Gaps = 60/340 (17%)
Query: 43 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 98
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 71
Query: 99 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 158
A+G + LSA D+ RL+ V + E QR V ++ V++ D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKS-------------DVMSVD 114
Query: 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 210
++ +++ D VW ++ L + +R P + TI
Sbjct: 115 I----DKKASMIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 270
+ GN + ++ +NL ++ HN + + TL+ SA
Sbjct: 170 ISAGNDKM-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 214
Query: 271 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 329
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 273
Query: 330 ---KFEGHTD----RITDFCFSEDGKWLLSSGMDGSLRIW 362
+F G++ +S DG+ L + D +R+W
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 328 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
VR F+GH+ + D + DG + LS+ D +LR+WDV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 3 GAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFAN 57
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A+
Sbjct: 18 GWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 58 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 117
+SAS D ++++W T + R + GH + + + I+S +D+ +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 118 LFSV 121
++++
Sbjct: 133 VWTI 136
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
V+ CT++A G +A+ + + +++ +G + ++ H +V+ V D
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
+++IS IKVW KG+ L + W S V++V + + + + +D
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
+++ +++ ++ F GH I S DG + S+G DG + +W++ + + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 376 DVSITALSLSPNMDVLATA 394
+ +L+ SPN LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 130/346 (37%), Gaps = 60/346 (17%)
Query: 43 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 98
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 71
Query: 99 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 158
A+G + LSA D+ RL+ D + E QR V ++ V++ D
Sbjct: 72 TLTADGAYALSASWDKTLRLW----DVATGETYQRFVGHKS-------------DVMSVD 114
Query: 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 210
++ +++ D VW ++ L + +R P + TI
Sbjct: 115 I----DKKASMIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 270
+ GN + ++ +NL ++ HN + + TL+ SA
Sbjct: 170 ISAGNDKM-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 214
Query: 271 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 329
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 273
Query: 330 ---KFEGHTD----RITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368
+F G++ +S DG+ L + D +R+W V+ A
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 2 RGAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFA 56
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A
Sbjct: 17 NGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 57 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 116
+ +SAS D ++++W T + R + GH + + + I+S +D+
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 117 RLFSV 121
+++++
Sbjct: 132 KVWTI 136
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
V+ CT++A G +A+ + + +++ +G + ++ H +V+ V D
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
+++IS IKVW KG+ L + W S V++V + + + + +D
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
+++ +++ ++ F GH I S DG + S+G DG + +W++ + + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 376 DVSITALSLSPNMDVLATA 394
+ +L+ SPN LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 130/346 (37%), Gaps = 60/346 (17%)
Query: 43 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 98
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 71
Query: 99 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 158
A+G + LSA D+ RL+ D + E QR V ++ V++ D
Sbjct: 72 TLTADGAYALSASWDKTLRLW----DVATGETYQRFVGHKS-------------DVMSVD 114
Query: 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 210
++ +++ D VW ++ L + +R P + TI
Sbjct: 115 I----DKKASMIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 270
+ GN + ++ +NL ++ HN + + TL+ SA
Sbjct: 170 ISAGNDKM-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 214
Query: 271 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 329
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 273
Query: 330 ---KFEGHTD----RITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368
+F G++ +S DG+ L + D +R+W V+ A
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 2 RGAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFA 56
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A
Sbjct: 17 NGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 57 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 116
+ +SAS D ++++W T + R + GH + + + I+S +D+
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 117 RLFSV 121
+++++
Sbjct: 132 KVWTI 136
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
V+ CT++A G +A+ + + +++ +G + ++ H +V+ V D
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
+++IS IKVW KG+ L + W S V++V + + + + +D
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
+++ +++ ++ F GH I S DG + S+G DG + +W++ + + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 376 DVSITALSLSPNMDVLATA 394
+ +L+ SPN LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 130/346 (37%), Gaps = 60/346 (17%)
Query: 43 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 98
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 71
Query: 99 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 158
A+G + LSA D+ RL+ D + E QR V ++ V++ D
Sbjct: 72 TLTADGAYALSASWDKTLRLW----DVATGETYQRFVGHKS-------------DVMSVD 114
Query: 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 210
++ +++ D VW ++ L + +R P + TI
Sbjct: 115 I----DKKASMIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 270
+ GN + ++ +NL ++ HN + + TL+ SA
Sbjct: 170 ISAGNDKM-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 214
Query: 271 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 329
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 273
Query: 330 ---KFEGHT----DRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368
+F G++ +S DG+ L + D +R+W V+ A
Sbjct: 274 LRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 2 RGAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFA 56
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A
Sbjct: 17 NGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 57 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 116
+ +SAS D ++++W T + R + GH + + + I+S +D+
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 117 RLFSV 121
+++++
Sbjct: 132 KVWTI 136
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
V+ CT++A G +A+ + + +++ +G + ++ H +V+ V D
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 113
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
+++IS IKVW KG+ L + W S V++V + + + + +D
Sbjct: 114 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
+++ +++ ++ F GH I S DG + S+G DG + +W++ + + +
Sbjct: 171 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
Query: 376 DVSITALSLSPNMDVLATA 394
+ +L+ SPN LA A
Sbjct: 231 QDEVFSLAFSPNRYWLAAA 249
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 130/345 (37%), Gaps = 60/345 (17%)
Query: 43 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 98
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 8 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 65
Query: 99 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 158
A+G + LSA D+ RL+ V + E QR V ++ V++ D
Sbjct: 66 TLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKS-------------DVMSVD 108
Query: 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 210
++ +++ D VW ++ L + +R P + TI
Sbjct: 109 I----DKKASMIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 270
+ GN + ++ +NL ++ HN + + TL+ SA
Sbjct: 164 ISAGNDKM-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 208
Query: 271 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 329
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 209 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 267
Query: 330 ---KFEGHTD----RITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367
+F G++ +S DG+ L + D +R+W V+ A
Sbjct: 268 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 3 GAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFAN 57
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A+
Sbjct: 12 GWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 70
Query: 58 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 117
+SAS D ++++W T + R + GH + + + I+S +D+ +
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 118 LFSV 121
++++
Sbjct: 127 VWTI 130
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 8/172 (4%)
Query: 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS--- 295
S LD R NY + +++ C +I G + +WD + + E+ S
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGC-----TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143
Query: 296 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355
+ + + + D I ++D+ +VR+F+GHTD + S DG L + G+
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407
D ++R WD+ RQ+ I +L P + LA N L VN+
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 13 DGQPLLASGASSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI 70
DG L+ G +S +SIW+L R+++ + + A +L + V S +D +I
Sbjct: 108 DGCTLIVGGEAS-TLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNI 165
Query: 71 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL 130
+W + L+R GH+ CI +G + + G D R + + ++ R+L
Sbjct: 166 AVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL---REGRQL 218
Query: 131 SQR 133
Q
Sbjct: 219 QQH 221
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
+ ++ FS DG+ LA+GA +I IW++E R++ +I + H+ I SL +F + L+S
Sbjct: 126 IRSVCFSPDGK-FLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 65 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR--------FYANGRHILSAGQDRAF 116
S D ++++W R+G + L I +G++I + DRA
Sbjct: 184 SGDRTVRIW------------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231
Query: 117 RLF 119
R++
Sbjct: 232 RVW 234
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366
LAT A+D +IR++D+ ++V +GH I + G L+S D ++RIWD+
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 367 ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 410
+ + ++ +T +++SP A V +W + F
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/106 (17%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 267 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL 325
++S +++WD + + + + +G +A + D +R++D
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 326 RMVRKFE-------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
+V + + GH D + F+ DG+ ++S +D S+++W++
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVLATAH 395
I CFS DGK+L + D +RIWD I R+I I + I +L P+ D L +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWD-IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 396 VDQNGVYLW 404
D+ V +W
Sbjct: 185 GDRT-VRIW 192
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 21/143 (14%)
Query: 5 VTALAFSSDGQPLLASG---------ASSGVI-------SIWNLEKRRLQSVIREAHDNA 48
V + FS+DG+ LA+G S G + S N + L + + D
Sbjct: 67 VCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125
Query: 49 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL 108
I S+ F + L + + D I++W + +++ GH + ++ +G ++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 109 SAGQDRAFRLFSVIQDQQSRELS 131
S DR R++ + Q S LS
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLS 204
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264
V+ CT++A G +A+ + + +++ +G + ++ H +V V D
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVXSVDIDKKA 119
Query: 265 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRV----NGLLATVADDL 315
+ +IS IKVW KG+ L + W S V++V + + + + +D
Sbjct: 120 SXIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375
++ +++ ++ F GH I S DG + S+G DG + +W++ + +
Sbjct: 177 XVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Query: 376 DVSITALSLSPNMDVLATA 394
+ +L+ SPN LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 127/346 (36%), Gaps = 60/346 (17%)
Query: 43 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 98
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 71
Query: 99 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 158
A+G + LSA D+ RL+ V + E QR V ++ V + D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKS-------------DVXSVD 114
Query: 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 210
++ +++ D VW ++ L + +R P + TI
Sbjct: 115 I----DKKASXIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 270
+ GN ++ +NL ++ HN + + TL+ SA
Sbjct: 170 ISAGNDKX-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 214
Query: 271 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 329
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 215 GKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 273
Query: 330 ---KFEGHTD----RITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368
+F G++ +S DG+ L + D +R+W V A
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 2 RGAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFA 56
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A
Sbjct: 17 NGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 57 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 116
+ +SAS D ++++W T + R + GH + + I+S +D+
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 117 RLFSV 121
+++++
Sbjct: 132 KVWTI 136
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG--- 306
AH EV+ A S ++ + + +K+WD L ++ V H N
Sbjct: 662 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC-HFTNKSNH 720
Query: 307 -LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365
LLAT ++D ++L+D+ GHT+ + FS D + L S DG+LR+WDV
Sbjct: 721 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Query: 366 LARQIDAIHV 375
A + +I+V
Sbjct: 781 SANERKSINV 790
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/360 (20%), Positives = 139/360 (38%), Gaps = 56/360 (15%)
Query: 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76
LLA+G++ + +W+L ++ ++ + H N++ F ++ +L S SAD ++++W D
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLW--D 778
Query: 77 TTDGDPR----LLRFRSGHSAPP-------LCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125
+ R + RF PP C + A+G I+ A +++ LF +
Sbjct: 779 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDI---H 834
Query: 126 QSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD--CAEIRERDWCNVVTCHMDTAQAYVW 183
S L++ H + VIA C E+ W ++D+
Sbjct: 835 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL----W------NIDS------ 878
Query: 184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243
RL+ + C + + V S G+ + + I + + + +
Sbjct: 879 RLK--------VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 930
Query: 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 303
E E + +A D+ L + AG G I D +V C +
Sbjct: 931 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI--------DYLPEAQVSCCCLSPHLEY 982
Query: 304 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
V A +D I++ ++ R+ GH + F+ DGK L+SS D +++W+
Sbjct: 983 V----AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 299
ER H G V+ A S T S K+W F DL S + GC V+
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1139
Query: 300 VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 349
++G LLAT D+ IR+++V +++ EG H +TD CFS D K
Sbjct: 1140 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1199
Query: 350 LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 401
L+S+G G L+ W+V + + ++ + +SP+ T VD G+
Sbjct: 1200 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1248
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
AV FS DGQ + + GA + +L + +AH++ ++ F +++ + +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAFSSDDSYIAT 681
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118
SAD +K+W D+ G +L+ HS C F H+L A F L
Sbjct: 682 CSADKKVKIW--DSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 18 LASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 77
L S + G + +WN+ R++ H ++S ++ S SAD + K+W FD
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFT-CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1123
Query: 78 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125
L GH+ C F +G + + + R+++V Q
Sbjct: 1124 LSP----LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1167
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVL 391
HTD + CFS+DG+ + S G D +L+++ ++ I H D + + S + +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSDDSYI 679
Query: 392 ATAHVDQNGVYLW-----------------VNRCMFSGDSNIDSYASGKEIVSVKMPSVS 434
AT D+ V +W VN C F+ SN A+G +K+ ++
Sbjct: 680 ATCSADKK-VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 435 SVE 437
E
Sbjct: 739 QKE 741
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 21/177 (11%)
Query: 267 MISAGYHGDIKVWD-FKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLV-IRLFDVV 323
++S + G +KVW+ GR + G L + +T AD I FD+
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL- 1123
Query: 324 ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAIHVDVS-- 378
L + + +GH + FS DG L + +G +RIW+V L I V+
Sbjct: 1124 -LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1182
Query: 379 -----ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 430
+T + SP+ L +A G W N + +GDS+ Y +G + + +
Sbjct: 1183 THGGWVTDVCFSPDSKTLVSA----GGYLKWWN--VATGDSSQTFYTNGTNLKKIHV 1233
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 27/130 (20%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS-----VIREA---HDNAIISLHF 54
G V AFS DG LLA+G +G I IWN+ +L + E H + + F
Sbjct: 1135 GCVRCSAFSLDG-ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1193
Query: 55 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114
+ L+SA +K W T D FY NG ++
Sbjct: 1194 SPDSKTLVSAGG--YLKWWNVATGDSSQ----------------TFYTNGTNLKKIHVSP 1235
Query: 115 AFRLFSVIQD 124
FR + + +
Sbjct: 1236 DFRTYVTVDN 1245
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 308 LATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD--- 363
LA +A + L+++ + V GH + FS DG L++ D ++R+W+
Sbjct: 861 LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
Query: 364 ------VILARQIDAI 373
++L ++ID +
Sbjct: 921 VCKNSAIVLKQEIDVV 936
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG--- 306
AH EV+ A S ++ + + +K+WD L ++ V H N
Sbjct: 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC-HFTNKSNH 713
Query: 307 -LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365
LLAT ++D ++L+D+ GHT+ + FS D + L S DG+LR+WDV
Sbjct: 714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Query: 366 LARQIDAIHV 375
A + +I+V
Sbjct: 774 SANERKSINV 783
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/360 (20%), Positives = 139/360 (38%), Gaps = 56/360 (15%)
Query: 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76
LLA+G++ + +W+L ++ ++ + H N++ F ++ +L S SAD ++++W D
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLW--D 771
Query: 77 TTDGDPR----LLRFRSGHSAPP-------LCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125
+ R + RF PP C + A+G I+ A +++ LF +
Sbjct: 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDI---H 827
Query: 126 QSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD--CAEIRERDWCNVVTCHMDTAQAYVW 183
S L++ H + VIA C E+ W ++D+
Sbjct: 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL----W------NIDS------ 871
Query: 184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243
RL+ + C + + V S G+ + + I + + + +
Sbjct: 872 RLK--------VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923
Query: 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 303
E E + +A D+ L + AG G I D +V C +
Sbjct: 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI--------DYLPEAQVSCCCLSPHLEY 975
Query: 304 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
V A +D I++ ++ R+ GH + F+ DGK L+SS D +++W+
Sbjct: 976 V----AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 299
ER H G V+ A S T S K+W F DL S + GC V+
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1132
Query: 300 VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 349
++G LLAT D+ IR+++V +++ EG H +TD CFS D K
Sbjct: 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1192
Query: 350 LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 401
L+S+G G L+ W+V + + ++ + +SP+ T VD G+
Sbjct: 1193 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1241
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
AV FS DGQ + + GA + +L + +AH++ ++ F +++ + +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAFSSDDSYIAT 674
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118
SAD +K+W D+ G +L+ HS C F H+L A F L
Sbjct: 675 CSADKKVKIW--DSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 18 LASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 77
L S + G + +WN+ R++ H ++S ++ S SAD + K+W FD
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFT-CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1116
Query: 78 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125
L GH+ C F +G + + + R+++V Q
Sbjct: 1117 LSP----LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVL 391
HTD + CFS+DG+ + S G D +L+++ ++ I H D + + S + +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSDDSYI 672
Query: 392 ATAHVDQNGVYLW-----------------VNRCMFSGDSNIDSYASGKEIVSVKMPSVS 434
AT D+ V +W VN C F+ SN A+G +K+ ++
Sbjct: 673 ATCSADKK-VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 435 SVE 437
E
Sbjct: 732 QKE 734
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 21/177 (11%)
Query: 267 MISAGYHGDIKVWD-FKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLV-IRLFDVV 323
++S + G +KVW+ GR + G L + +T AD I FD+
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL- 1116
Query: 324 ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAIHVDVS-- 378
L + + +GH + FS DG L + +G +RIW+V L I V+
Sbjct: 1117 -LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1175
Query: 379 -----ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 430
+T + SP+ L +A G W N + +GDS+ Y +G + + +
Sbjct: 1176 THGGWVTDVCFSPDSKTLVSA----GGYLKWWN--VATGDSSQTFYTNGTNLKKIHV 1226
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 27/130 (20%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS-----VIREA---HDNAIISLHF 54
G V AFS DG LLA+G +G I IWN+ +L + E H + + F
Sbjct: 1128 GCVRCSAFSLDG-ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186
Query: 55 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114
+ L+SA +K W T D FY NG ++
Sbjct: 1187 SPDSKTLVSAGG--YLKWWNVATGDSSQ----------------TFYTNGTNLKKIHVSP 1228
Query: 115 AFRLFSVIQD 124
FR + + +
Sbjct: 1229 DFRTYVTVDN 1238
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 308 LATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD--- 363
LA +A + L+++ + V GH + FS DG L++ D ++R+W+
Sbjct: 854 LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
Query: 364 ------VILARQIDAI 373
++L ++ID +
Sbjct: 914 VCKNSAIVLKQEIDVV 929
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
V L+F+ + +LA+G++ +++W+L +L+ E+H + I +H+ NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 64 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
+ D + +W D DG P LL GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 307 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 364
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
V L+F+ + +LA+G++ +++W+L +L+ E+H + I +H+ NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 64 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
+ D + +W D DG P LL GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 307 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 364
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW-----EVGCSLVKIVYHRV 304
AH EV+ A + + + + +K+W+ +L + +V C H +
Sbjct: 661 AHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHL 720
Query: 305 NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
LLAT + D ++L+D+ GHT+ + FS D K L S DG+L++WD
Sbjct: 721 --LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 365 ILARQIDAIHV 375
A + +I+V
Sbjct: 779 TSANERKSINV 789
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/381 (20%), Positives = 151/381 (39%), Gaps = 46/381 (12%)
Query: 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76
LLA+G+S + +W+L ++ ++ + H N++ F ++ +L S SAD ++K+W D
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDKLLASCSADGTLKLW--D 777
Query: 77 TTDGDPR----LLRFRSGHSAPP-------LCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125
T + R + +F P C + A+G I+ A +++ F LF +
Sbjct: 778 ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIF-LFDI---H 833
Query: 126 QSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD--CAEIRERD-------------WCNV 170
S L + H + V+A C E+ D W +
Sbjct: 834 TSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHG 893
Query: 171 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN 230
V D + + + C + +K V+ A I R
Sbjct: 894 VMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQ 953
Query: 231 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDF-KGRDLKS 288
L +G R +D + V C S + I+ G +G I++ + R +S
Sbjct: 954 LING--RTGQIDYLTEAQ-------VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQS 1004
Query: 289 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 348
R++ ++ I + L + +DD I++++ + + GH + + DF ++ +
Sbjct: 1005 RFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSR 1063
Query: 349 WLLSSGMDGSLRIWDVILARQ 369
LLS DG++++W++I +
Sbjct: 1064 -LLSWSFDGTVKVWNIITGNK 1083
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 24/172 (13%)
Query: 245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL-----KSRWEVGCSLVKI 299
E+ H G V+ T S K+W F DL + R GC V+
Sbjct: 1084 EKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF---DLLLPLHELRGHNGC--VRC 1138
Query: 300 VYHRVNG-LLATVADDLVIRLFDVVALRMVR-----KFEG---HTDRITDFCFSEDGKWL 350
V+ LLAT D+ IR+++V ++ EG H +TD CFS DGK L
Sbjct: 1139 SAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKML 1198
Query: 351 LSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 401
+S+G G ++ W+V+ + + ++ + +SP+ T VD G+
Sbjct: 1199 ISAG--GYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVT--VDNLGI 1246
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 75/399 (18%), Positives = 135/399 (33%), Gaps = 78/399 (19%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
AV FS DGQ + + GA + +L + +AH++ ++ F ++ + +
Sbjct: 623 AVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI--KAHEDEVLCCAFSTDDRFIAT 680
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVI 122
S D +K+W ++ G+ L+ HS C F + H+L A G F +
Sbjct: 681 CSVDKKVKIW--NSMTGE--LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 123 QDQQSRELSQRHV-----AKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDT 177
++ R H + + + +D ER NV
Sbjct: 737 NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINV------- 789
Query: 178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237
+ F L ++ P + VK C+ SA G ++ A I F++
Sbjct: 790 --------KQFFL--NLEDPQEDMEVIVKCCSWSADGA-RIMVAAKNKIFLFDI------ 832
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLV 297
H ++G I G+H I+ DF +
Sbjct: 833 -------------HTSGLLG---------EIHTGHHSTIQYCDFSPQ------------- 857
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357
N L + L++ + V GH + FS DG L+S D
Sbjct: 858 -------NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQ 910
Query: 358 SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV 396
++R+W+ + A+ + + + + VLA H+
Sbjct: 911 TIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHI 949
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVL 391
HTD + CFSEDG+ + S G D +L+++ ++ I H D + + S + +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHED-EVLCCAFSTDDRFI 678
Query: 392 ATAHVDQNGVYLW-----------------VNRCMFSGDSNIDSYASGKEIVSVKMPSVS 434
AT VD+ V +W VN C F+ S+ A+G +K+ ++
Sbjct: 679 ATCSVDKK-VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 435 SVE 437
E
Sbjct: 738 QKE 740
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI-------REAHDNAIISLHFF 55
G V AFS D LLA+G +G I IWN+ L + H + L F
Sbjct: 1134 GCVRCSAFSVDS-TLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFS 1192
Query: 56 ANEPVLMSASADNSIKMW 73
+ +L+SA IK W
Sbjct: 1193 PDGKMLISAGG--YIKWW 1208
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 21/129 (16%)
Query: 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-- 365
+A+ D +++F + + + H D + FS D +++ + +D ++IW+ +
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTG 695
Query: 366 -LARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW-----------------VNR 407
L D V+ + S + +LAT D + LW VN
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSD-CFLKLWDLNQKECRNTMFGHTNSVNH 754
Query: 408 CMFSGDSNI 416
C FS D +
Sbjct: 755 CRFSPDDKL 763
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 23/163 (14%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVY 301
H EV VA N ++SAG +IK+W+ G ++ S W V C +
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW-VSCVRYSPIM 174
Query: 302 HRVNGL------LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355
N + A+V D +++++ ++ F+ H + S +GK++ + G
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233
Query: 356 DGSLRIWDVI----LARQIDAIHVDVSITALSLSPNMDVLATA 394
D L IWD++ R+ DA +I ++ +P + +A
Sbjct: 234 DKKLLIWDILNLTYPQREFDA---GSTINQIAFNPKLQWVAVG 273
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 16 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV------LMSASADNS 69
P+L SG+ + IW L + H HF ++ + +S+S D +
Sbjct: 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT 99
Query: 70 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 124
+++W T R + GH + + F + R ILSAG +R +L++++ +
Sbjct: 100 LRLWDLRTGTTYKRFV----GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 74/177 (41%), Gaps = 17/177 (9%)
Query: 237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--C 294
+ Y + ++ HN V +A N IS+ + +++WD + R+ VG
Sbjct: 61 QNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQS 119
Query: 295 SLVKIVYHRVNGLLATVADDLVIRLFDVVA---LRMVRKFEGHTDRITDFCFSEDGK--- 348
+ + + N + + + I+L++++ K E H+D ++ +S K
Sbjct: 120 EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK-ENHSDWVSCVRYSPIMKSAN 178
Query: 349 -------WLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 398
+ S G DG L++W+ + + ++ LS+SPN +AT D+
Sbjct: 179 KVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHF-----FANE 58
V ++AFS D + +L++GA I +WN L + + S +E H + + + + AN+
Sbjct: 121 VYSVAFSPDNRQILSAGAER-EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179
Query: 59 -----PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 113
P S D +K+W T+ R F++ H + + NG++I + G+D
Sbjct: 180 VQPFAPYFASVGWDGRLKVW---NTNFQIRYT-FKA-HESNVNHLSISPNGKYIATGGKD 234
Query: 114 RAFRLFSVI 122
+ ++ ++
Sbjct: 235 KKLLIWDIL 243
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 329 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA-IHVDVSITALSLSPN 387
+ GH ++D S++ + +SS D +LR+WD+ + + +++ SP+
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 388 MDVLATAHVDQNGVYLW--VNRCMFS 411
+ +A ++ + LW + C FS
Sbjct: 130 NRQILSAGAERE-IKLWNILGECKFS 154
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
V L+F+ + +LA+G++ +++W+L +L+ E+H + I + + NE +L S
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 64 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
+ D + +W D DG P LL GH+A
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 307 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 364
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 76/210 (36%), Gaps = 30/210 (14%)
Query: 214 GNFAVLGTAGGWIE---RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 270
G F G+ G IE + N + ++R Y+ N V+ S++ L+
Sbjct: 107 GEFGGFGSVCGKIEIEIKINHEGEVNRARYM--------PQNACVIATKTPSSDVLVFDY 158
Query: 271 GYHGDIKVWDFKGR---DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 327
H + G DL+ R +NG L + +DD I L+D+ A
Sbjct: 159 TKHPSKP--EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 216
Query: 328 VRK-------FEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHV---- 375
+ F GHT + D + + L S D L IWD H
Sbjct: 217 EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276
Query: 376 DVSITALSLSPNMD-VLATAHVDQNGVYLW 404
+ LS +P + +LAT D+ V LW
Sbjct: 277 TAEVNCLSFNPYSEFILATGSADKT-VALW 305
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
V L+F+ + +LA+G++ +++W+L +L+ E+H + I + + NE +L S
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 64 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
+ D + +W D DG P LL GH+A
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 307 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 364
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 303 RVNGLLATVADDLVIRLFDVVALRMVRK-------FEGHTDRITDFCFSEDGKWLLSS-G 354
+NG L + +DD I L+D+ A + F GHT + D + + L S
Sbjct: 196 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 255
Query: 355 MDGSLRIWDVILARQIDAIH-VD---VSITALSLSPNMD-VLATAHVDQNGVYLW 404
D L IWD H VD + LS +P + +LAT D+ V LW
Sbjct: 256 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALW 309
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
V L+F+ + +LA+G++ +++W+L +L+ E+H + I + + NE +L S
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 64 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
+ D + +W D DG P LL GH+A
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 307 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 364
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 76/210 (36%), Gaps = 30/210 (14%)
Query: 214 GNFAVLGTAGGWIE---RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 270
G F G+ G IE + N + ++R Y+ N V+ S++ L+
Sbjct: 109 GEFGGFGSVCGKIEIEIKINHEGEVNRARYM--------PQNACVIATKTPSSDVLVFDY 160
Query: 271 GYHGDIKVWDFKGR---DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 327
H + G DL+ R +NG L + +DD I L+D+ A
Sbjct: 161 TKHPSKP--EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 218
Query: 328 VRK-------FEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHV---- 375
+ F GHT + D + + L S D L IWD H
Sbjct: 219 EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 278
Query: 376 DVSITALSLSPNMD-VLATAHVDQNGVYLW 404
+ LS +P + +LAT D+ V LW
Sbjct: 279 TAEVNCLSFNPYSEFILATGSADKT-VALW 307
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 63
V L+F+ + +LA+G++ +++W+L +L+ E+H + I + + NE +L S
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 64 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 93
+ D + +W D DG P LL GH+A
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTA 375
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 307 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 364
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 21 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80
G + G I + + LQ I +AH + I L FF + L+S+S D +K+W DG
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 168
Query: 81 -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118
+PR L GH A I GR++LSA D RL
Sbjct: 169 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 204
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 274 GDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 329
GDIKV D + + E+ + K+ + L + + D+ ++++ V R
Sbjct: 116 GDIKVLD---SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR 172
Query: 330 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
GH +TD + G+ +LS+ +DG++R+W+
Sbjct: 173 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 70 IKMWIFDTTDGDPRLL--------RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
++ +I TT+GD ++L H + ++F+ +G ++S+ QD +++SV
Sbjct: 106 MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Query: 122 IQDQQSREL 130
R L
Sbjct: 166 KDGSNPRTL 174
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 21 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80
G + G I + + LQ I +AH + I L FF + L+S+S D +K+W DG
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 171
Query: 81 -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118
+PR L GH A I GR++LSA D RL
Sbjct: 172 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 207
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 274 GDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 329
GDIKV D + + E+ + K+ + L + + D+ ++++ V R
Sbjct: 119 GDIKVLD---SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR 175
Query: 330 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
GH +TD + G+ +LS+ +DG++R+W+
Sbjct: 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 70 IKMWIFDTTDGDPRLL--------RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
++ +I TT+GD ++L H + ++F+ +G ++S+ QD +++SV
Sbjct: 109 MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Query: 122 IQDQQSREL 130
R L
Sbjct: 169 KDGSNPRTL 177
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 11 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 68
S+ PLLA S G+I I N + + ++ + H NAI L F +P +L+S S D+
Sbjct: 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
++++W TD + GH L + G I+S G D + +L+ +
Sbjct: 139 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 214 GNFAVLGTAGGWIERFNLQSGISRG------SYLDMSERSNYAHNGEVVGVACDSTNTLM 267
G+ V T G R L S+G SY+D N+ ++++ L+
Sbjct: 33 GDPLVFATVGS--NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD--SNTSHPLL 88
Query: 268 ISAGYHGDIKVWD-FKGRDLKSRWEVGCSLVKIVYH-RVNGLLATVADDLVIRLFDVVAL 325
AG G I++ + + +K G ++ ++ +H R LL +V+ D +RL+++
Sbjct: 89 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148
Query: 326 RMVRKF---EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 373
+V F EGH D + + G+ ++S GMD SL++W + R ++AI
Sbjct: 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPV 60
A+ L F LL S + + +WN++ L ++ E H + ++S +
Sbjct: 116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 175
Query: 61 LMSASADNSIKMW 73
+MS D+S+K+W
Sbjct: 176 IMSCGMDHSLKLW 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 11 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 68
S+ PLLA S G+I I N + + ++ + H NAI L F +P +L+S S D+
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
++++W TD + GH L + G I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 214 GNFAVLGTAGGWIERFNLQSGISRG------SYLDMSERSNYAHNGEVVGVACDSTNTLM 267
G+ V T G R L S+G SY+D N+ ++++ L+
Sbjct: 32 GDPLVFATVGS--NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDS--NTSHPLL 87
Query: 268 ISAGYHGDIKVWD-FKGRDLKSRWEVGCSLVKIVYH-RVNGLLATVADDLVIRLFDVVAL 325
AG G I++ + + +K G ++ ++ +H R LL +V+ D +RL+++
Sbjct: 88 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
Query: 326 RMVRKF---EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 373
+V F EGH D + + G+ ++S GMD SL++W + R ++AI
Sbjct: 148 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPV 60
A+ L F LL S + + +WN++ L ++ E H + ++S +
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174
Query: 61 LMSASADNSIKMW 73
+MS D+S+K+W
Sbjct: 175 IMSCGMDHSLKLW 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 11 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 68
S+ PLLA S G+I I N + + ++ + H NAI L F +P +L+S S D+
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
++++W TD + GH L + G I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 214 GNFAVLGTAGGWIERFNLQSGISRG------SYLDMSERSNYAHNGEVVGVACDSTNTLM 267
G+ V T G R L S+G SY+D N+ ++++ L+
Sbjct: 32 GDPLVFATVGS--NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDS--NTSHPLL 87
Query: 268 ISAGYHGDIKVWD-FKGRDLKSRWEVGCSLVKIVYH-RVNGLLATVADDLVIRLFDVVAL 325
AG G I++ + + +K G ++ ++ +H R LL +V+ D +RL+++
Sbjct: 88 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
Query: 326 RMVRKF---EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 373
+V F EGH D + + G+ ++S GMD SL++W + R ++AI
Sbjct: 148 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPV 60
A+ L F LL S + + +WN++ L ++ E H + ++S +
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174
Query: 61 LMSASADNSIKMW 73
+MS D+S+K+W
Sbjct: 175 IMSCGMDHSLKLW 187
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 11 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 68
S+ PLLA S G+I I N + + ++ + H NAI L F +P +L+S S D+
Sbjct: 76 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
++++W TD + GH L + G I+S G D + +L+ +
Sbjct: 134 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 214 GNFAVLGTAGGWIERFNLQSGISRG------SYLDMSERSNYAHNGEVVGVACDSTNTLM 267
G+ V T G R L S+G SY+D N+ ++++ L+
Sbjct: 28 GDPLVFATVGS--NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD--SNTSHPLL 83
Query: 268 ISAGYHGDIKVWD-FKGRDLKSRWEVGCSLVKIVYH-RVNGLLATVADDLVIRLFDVVAL 325
AG G I++ + + +K G ++ ++ +H R LL +V+ D +RL+++
Sbjct: 84 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 143
Query: 326 RMVRKF---EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 373
+V F EGH D + + G+ ++S GMD SL++W + R ++AI
Sbjct: 144 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 194
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPV 60
A+ L F LL S + + +WN++ L ++ E H + ++S +
Sbjct: 111 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 170
Query: 61 LMSASADNSIKMW 73
+MS D+S+K+W
Sbjct: 171 IMSCGMDHSLKLW 183
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 352
G ++ I Y LA+ A D +I +FD+ +++ EGH I FS D + L++
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 353 SGMDGSLRIWDV 364
+ DG ++I+DV
Sbjct: 224 ASDDGYIKIYDV 235
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
+ ++A+S DG+ LASGA G+I+I+++ +L + E H I SL F + +L++A
Sbjct: 167 ILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTL-EGHAMPIRSLTFSPDSQLLVTA 224
Query: 65 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 107
S D IK I+D + L SGH++ L + F + H
Sbjct: 225 SDDGYIK--IYDVQHAN--LAGTLSGHASWVLNVAFCPDDTHF 263
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 258 VACDSTNTLMISAGYHGD--IKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 314
V+ D ++TL I+A D I++WD + G+ +KS + + + LAT
Sbjct: 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV 143
Query: 315 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 374
+ +F V + + + I +S DGK+L S +DG + I+D+ + + +
Sbjct: 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203
Query: 375 VD-VSITALSLSPNMDVLATAHVD 397
+ I +L+ SP+ +L TA D
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDD 227
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 13/188 (6%)
Query: 178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237
A +W L+N G+ I + P S + GT G + F ++SG
Sbjct: 102 AHIRLWDLEN---GKQI-KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 296
S + R + ++ +A + S G I ++D G+ L + +
Sbjct: 158 YS---LDTRGKF-----ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
+ + + LL T +DD I+++DV + GH + + F D +SS D
Sbjct: 210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD 269
Query: 357 GSLRIWDV 364
S+++WDV
Sbjct: 270 KSVKVWDV 277
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALS 383
L + EGH + S SS +D +R+WD+ +QI +I V L+
Sbjct: 70 LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLA 129
Query: 384 LSPNMDVLATA-HVDQNGVY 402
SP+ LAT HV + ++
Sbjct: 130 FSPDSQYLATGTHVGKVNIF 149
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
+ +L FS D Q LL + + G I I++++ L + H + ++++ F ++ +S+
Sbjct: 209 IRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDDTHFVSS 266
Query: 65 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
S+D S+K+W G + H +++ NG I+S G D+ ++
Sbjct: 267 SSDKSVKVWDV----GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 11 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 68
S+ PLLA S G+I I N + + ++ + H NAI L F +P +L+S S D+
Sbjct: 117 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
++++W TD + GH L + G I+S G D + +L+ +
Sbjct: 175 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 214 GNFAVLGTAGGWIERFNLQSGISRG------SYLDMSERSNYAHNGEVVGVACDSTNTLM 267
G+ V T G R L S+G SY+D N+ ++++ L+
Sbjct: 69 GDPLVFATVGS--NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD--SNTSHPLL 124
Query: 268 ISAGYHGDIKVWD-FKGRDLKSRWEVGCSLVKIVYH-RVNGLLATVADDLVIRLFDVVAL 325
AG G I++ + + +K G ++ ++ +H R LL +V+ D +RL+++
Sbjct: 125 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 184
Query: 326 RMVRKF---EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 373
+V F EGH D + + G+ ++S GMD SL++W + R ++AI
Sbjct: 185 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 235
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPVL 61
A+ L F LL S + + +WN++ L ++ E H + ++S + +
Sbjct: 153 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI 212
Query: 62 MSASADNSIKMW 73
MS D+S+K+W
Sbjct: 213 MSCGMDHSLKLW 224
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 216 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 275
FA G G I +N G G + D S + N AH+G V G+ T + SA
Sbjct: 205 FASTG-GDGTIVLYNGVDGTKTGVFEDDSLK-NVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 276 IKVWDFKGRDLKSRWEVGCSL----VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF 331
IK+W+ ++ VG + + I++ + L +++ + I + + +
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGFINFVNPELGSIDQVR 320
Query: 332 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
GH IT S DGK L S+ +G + WD+
Sbjct: 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 312 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 371
+DD + +F+ + F HT + ++ DG S+G DG++ +++ + +
Sbjct: 167 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226
Query: 372 AIHVDV--------SITALSLSPNMDVLATAHVDQNGVYLW 404
D S+ L+ SP+ +A+A D+ + +W
Sbjct: 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIW 266
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWN---------LEKRRLQSVIREAHDNAIISLHFF 55
V ++ ++ DG L AS G I ++N E L++V AH ++ L +
Sbjct: 193 VHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV---AHSGSVFGLTWS 248
Query: 56 ANEPVLMSASADNSIKMW 73
+ + SASAD +IK+W
Sbjct: 249 PDGTKIASASADKTIKIW 266
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
G ++ F D Q + +SG ++ ++W++E + + H ++SL + + +
Sbjct: 144 GYLSCCRFLDDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFV 200
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122
S + D S K+W D +G R + +GH + I F+ NG + D RLF +
Sbjct: 201 SGACDASAKLW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 123 QDQQSRELSQRHV 135
DQ+ S ++
Sbjct: 257 ADQELMTYSHDNI 269
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLA 309
H G+V+ ++ L +S K+WD + + + S + + NG A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 310 TVADDLVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367
T +DD RLFD+ A + M + IT FS+ G+ LL+ D + +WD + A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 368 RQIDAIHV-DVSITALSLSPNMDVLATAHVD 397
+ + D ++ L ++ + +AT D
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITA 381
+ +R R GH +I + D + L+S+ DG L IWD ++ AI + S +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 382 LSLSPNMDVLATAHVDQ 398
+ +P+ + +A +D
Sbjct: 103 CAYAPSGNYVACGGLDN 119
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------LKSRWEVGCSLV 297
+ R+ H ++ + + + L++SA G + +WD + L+S W + C+
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA-- 104
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVA----LRMVRKFEGHTDRITDFCFSEDGKWLLSS 353
Y +A D + ++++ +R+ R+ GHT ++ F +D + + SS
Sbjct: 105 ---YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 354 GMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW 404
G D + +WD+ +Q + +LSL+P+ + + D + LW
Sbjct: 162 G-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS-AKLW 211
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--I 365
+ T + D L+D+ + F GHT + + D + +S D S ++WDV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 366 LARQIDAIHVDVSITALSLSPNMDVLATAHVD 397
+ RQ H + I A+ PN + AT D
Sbjct: 217 MCRQTFTGH-ESDINAICFFPNGNAFATGSDD 247
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353
C + + + + LL DD ++D + GH +R++ ++DG + +
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 354 GMDGSLRIWD 363
D L+IW+
Sbjct: 331 SWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366
L + A D +L+DV + F GH I CF +G + D + R++D+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 367 ARQIDAIHVD---VSITALSLSPNMDVLATAHVDQN 399
+++ D IT++S S + +L + D N
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQSV-IREAHDNAIISLHFFANEPVLM 62
+ A+ + +D + LL S + G + IW+ ++ ++ +R + +++ + + +
Sbjct: 58 IYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSW---VMTCAYAPSGNYVA 113
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 111
DN ++ T +G+ R+ R +GH+ C RF + + + S+G
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
G ++ F D Q + +SG ++ ++W++E + + H ++SL + + +
Sbjct: 144 GYLSCCRFLDDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFV 200
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122
S + D S K+W D +G R + +GH + I F+ NG + D RLF +
Sbjct: 201 SGACDASAKLW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 123 QDQQSRELSQRHV 135
DQ+ S ++
Sbjct: 257 ADQELMTYSHDNI 269
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLA 309
H G+V+ ++ L +S K+WD + + + S + + NG A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 310 TVADDLVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367
T +DD RLFD+ A + M + IT FS+ G+ LL+ D + +WD + A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 368 RQIDAIHV-DVSITALSLSPNMDVLATAHVD 397
+ + D ++ L ++ + +AT D
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITA 381
+ +R R GH +I + D + LLS+ DG L IWD ++ AI + S +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 382 LSLSPNMDVLATAHVDQ 398
+ +P+ + +A +D
Sbjct: 103 CAYAPSGNYVACGGLDN 119
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--I 365
+ T + D L+D+ + F GHT + + D + +S D S ++WDV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 366 LARQIDAIHVDVSITALSLSPNMDVLATAHVD 397
+ RQ H + I A+ PN + AT D
Sbjct: 217 MCRQTFTGH-ESDINAICFFPNGNAFATGSDD 247
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353
C + + + + LL DD ++D + GH +R++ ++DG + +
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 354 GMDGSLRIWD 363
D L+IW+
Sbjct: 331 SWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366
L + A D +L+DV + F GH I CF +G + D + R++D+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 367 ARQIDAIHVD---VSITALSLSPNMDVLATAHVDQN 399
+++ D IT++S S + +L + D N
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQSV-IREAHDNAIISLHFFANEPVLM 62
+ A+ + +D + LL S + G + IW+ ++ ++ +R + +++ + + +
Sbjct: 58 IYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHAIPLRSSW---VMTCAYAPSGNYVA 113
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 111
DN ++ T +G+ R+ R +GH+ C RF + + + S+G
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
G ++ F D Q + +SG ++ ++W++E + + H ++SL + + +
Sbjct: 155 GYLSCCRFLDDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFV 211
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122
S + D S K+W D +G R + +GH + I F+ NG + D RLF +
Sbjct: 212 SGACDASAKLW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267
Query: 123 QDQQSRELSQRHV 135
DQ+ S ++
Sbjct: 268 ADQELMTYSHDNI 280
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLA 309
H G+V+ ++ L +S K+WD + + + S + + NG A
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 310 TVADDLVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367
T +DD RLFD+ A + M + IT FS+ G+ LL+ D + +WD + A
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 368 RQIDAIHV-DVSITALSLSPNMDVLATAHVD 397
+ + D ++ L ++ + +AT D
Sbjct: 314 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 344
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITA 381
+ +R R GH +I + D + L+S+ DG L IWD ++ AI + S +
Sbjct: 54 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 113
Query: 382 LSLSPNMDVLATAHVDQ 398
+ +P+ + +A +D
Sbjct: 114 CAYAPSGNYVACGGLDN 130
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------LKSRWEVGCSLV 297
+ R+ H ++ + + + L++SA G + +WD + L+S W + C+
Sbjct: 58 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA-- 115
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVA----LRMVRKFEGHTDRITDFCFSEDGKWLLSS 353
Y +A D + ++++ +R+ R+ GHT ++ F +D + + SS
Sbjct: 116 ---YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 172
Query: 354 GMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW 404
G D + +WD+ +Q + +LSL+P+ + + D + LW
Sbjct: 173 G-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS-AKLW 222
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--I 365
+ T + D L+D+ + F GHT + + D + +S D S ++WDV
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 366 LARQIDAIHVDVSITALSLSPNMDVLATAHVD 397
+ RQ H + I A+ PN + AT D
Sbjct: 228 MCRQTFTGH-ESDINAICFFPNGNAFATGSDD 258
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353
C + + + + LL DD ++D + GH +R++ ++DG + +
Sbjct: 282 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 341
Query: 354 GMDGSLRIWD 363
D L+IW+
Sbjct: 342 SWDSFLKIWN 351
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366
L + A D +L+DV + F GH I CF +G + D + R++D+
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 268
Query: 367 ARQIDAIHVD---VSITALSLSPNMDVLATAHVDQN 399
+++ D IT++S S + +L + D N
Sbjct: 269 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 304
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
+ A+ + +D + LL S + G + IW+ I + +++ + + +
Sbjct: 69 IYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPSGNYVACG 126
Query: 65 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 111
DN ++ T +G+ R+ R +GH+ C RF + + + S+G
Sbjct: 127 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
G ++ F D Q + +SG ++ ++W++E + + H ++SL + + +
Sbjct: 144 GYLSCCRFLDDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFV 200
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122
S + D S K+W D +G R + +GH + I F+ NG + D RLF +
Sbjct: 201 SGACDASAKLW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 123 QDQQSRELSQRHV 135
DQ+ S ++
Sbjct: 257 ADQELMTYSHDNI 269
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLA 309
H G+V+ ++ L +S K+WD + + + S + + NG A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 310 TVADDLVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367
T +DD RLFD+ A + M + IT FS+ G+ LL+ D + +WD + A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 368 RQIDAIHV-DVSITALSLSPNMDVLATAHVD 397
+ + D ++ L ++ + +AT D
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITA 381
+ +R R GH +I + D + LLS+ DG L IWD ++ AI + S +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 382 LSLSPNMDVLATAHVDQ 398
+ +P+ + +A +D
Sbjct: 103 CAYAPSGNYVACGGLDN 119
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--I 365
+ T + D L+D+ + F GHT + + D + +S D S ++WDV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 366 LARQIDAIHVDVSITALSLSPNMDVLATAHVD 397
+ RQ H + I A+ PN + AT D
Sbjct: 217 MCRQTFTGH-ESDINAICFFPNGNAFATGSDD 247
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353
C + + + + LL DD ++D + GH +R++ ++DG + +
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 354 GMDGSLRIWD 363
D L+IW+
Sbjct: 331 SWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366
L + A D +L+DV + F GH I CF +G + D + R++D+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 367 ARQIDAIHVD---VSITALSLSPNMDVLATAHVDQN 399
+++ D IT++S S + +L + D N
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQSV-IREAHDNAIISLHFFANEPVLM 62
+ A+ + +D + LL S + G + IW+ ++ ++ +R + +++ + + +
Sbjct: 58 IYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHAIPLRSSW---VMTCAYAPSGNYVA 113
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 111
DN ++ T +G+ R+ R +GH+ C RF + + + S+G
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 62
G ++ F D Q + +SG ++ ++W++E + + H ++SL + + +
Sbjct: 144 GYLSCCRFLDDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFV 200
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122
S + D S K+W D +G R + +GH + I F+ NG + D RLF +
Sbjct: 201 SGACDASAKLW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 123 QDQQSRELSQRHV 135
DQ+ S ++
Sbjct: 257 ADQELMTYSHDNI 269
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLA 309
H G+V+ ++ L +S K+WD + + + S + + NG A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 310 TVADDLVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367
T +DD RLFD+ A + M + IT FS+ G+ LL+ D + +WD + A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 368 RQIDAIHV-DVSITALSLSPNMDVLATAHVD 397
+ + D ++ L ++ + +AT D
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITA 381
+ +R R GH +I + D + L+S+ DG L IWD ++ AI + S +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 382 LSLSPNMDVLATAHVDQ 398
+ +P+ + +A +D
Sbjct: 103 CAYAPSGNYVACGGLDN 119
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------LKSRWEVGCSLV 297
+ R+ H ++ + + + L++SA G + +WD + L+S W + C+
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA-- 104
Query: 298 KIVYHRVNGLLATVADDLVIRLFDVVA----LRMVRKFEGHTDRITDFCFSEDGKWLLSS 353
Y +A D + ++++ +R+ R+ GHT ++ F +D + + SS
Sbjct: 105 ---YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 354 GMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW 404
G D + +WD+ +Q + +LSL+P+ + + D + LW
Sbjct: 162 G-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS-AKLW 211
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--I 365
+ T + D L+D+ + F GHT + + D + +S D S ++WDV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 366 LARQIDAIHVDVSITALSLSPNMDVLATAHVD 397
+ RQ H + I A+ PN + AT D
Sbjct: 217 MCRQTFTGH-ESDINAICFFPNGNAFATGSDD 247
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353
C + + + + LL DD ++D + GH +R++ ++DG + +
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 354 GMDGSLRIWD 363
D L+IW+
Sbjct: 331 SWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366
L + A D +L+DV + F GH I CF +G + D + R++D+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 367 ARQIDAIHVD---VSITALSLSPNMDVLATAHVDQN 399
+++ D IT++S S + +L + D N
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQSV-IREAHDNAIISLHFFANEPVLM 62
+ A+ + +D + LL S + G + IW+ ++ ++ +R + +++ + + +
Sbjct: 58 IYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSW---VMTCAYAPSGNYVA 113
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 111
DN ++ T +G+ R+ R +GH+ C RF + + + S+G
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 21/116 (18%)
Query: 261 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG---------LLATV 311
D + ++SA IKVW+ C V+ + G L+ +
Sbjct: 263 DFDDKYIVSASGDRTIKVWNTST----------CEFVRTLNGHKRGIACLQYRDRLVVSG 312
Query: 312 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367
+ D IRL+D+ +R EGH + + C D K ++S DG +++WD++ A
Sbjct: 313 SSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDLVAA 366
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 15/107 (14%)
Query: 18 LASGASSGVISIWN---LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 74
+ SG I IW+ LE +R+ + H +++ L + +E V+++ S+D+++++W
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILT----GHTGSVLCLQY--DERVIITGSSDSTVRVWD 199
Query: 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121
+T + +L H L +RF N +++ +DR+ ++ +
Sbjct: 200 VNTGE----MLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDM 240
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103
H A+ + F ++ ++SAS D +IK+W T + +R +GH C+++
Sbjct: 254 GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE----FVRTLNGHKRGIACLQY--R 305
Query: 104 GRHILSAGQDRAFRLFSV 121
R ++S D RL+ +
Sbjct: 306 DRLVVSGSSDNTIRLWDI 323
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76
L+ SG+S I +W++E V+ E H+ + + F + ++S + D IK+W
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVL-EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL- 363
Query: 77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118
DPR A LC+R L R FRL
Sbjct: 364 VAALDPRA-------PAGTLCLR-------TLVEHSGRVFRL 391
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 15/214 (7%)
Query: 191 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 250
G I+ +N V + C V T G W + ++ I D + + A
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNA 186
Query: 251 HNGEVVGVACDSTNTL---------MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301
GE + T+T+ ++S ++VWD + + V+ V
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246
Query: 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361
+ +++ A D +++++D + +GHT+R+ F DG ++S +D S+R+
Sbjct: 247 YDGRRVVSG-AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRV 303
Query: 362 WDVILARQIDAIHVDVSITA-LSLSPNMDVLATA 394
WDV I + S+T+ + L N+ V A
Sbjct: 304 WDVETGNCIHTLTGHQSLTSGMELKDNILVSGNA 337
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFA- 56
+G ++ + D + L +G+ +W++ + S+ H ++SL +
Sbjct: 157 KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216
Query: 57 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 116
N + +S S D ++++W T R +R GH ++F+ +G+ + D
Sbjct: 217 NANMFISGSCDTTVRLWDLRIT---SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273
Query: 117 RLFSVIQDQQ 126
RLF + Q
Sbjct: 274 RLFDMRTGHQ 283
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS- 378
F+ L R +GH+ ++ ++ + W++S+ DG L +W+ + +++ AI +
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW 110
Query: 379 ITALSLSPNMDVLATAHVD 397
+ + +PN +A +D
Sbjct: 111 VMECAFAPNGQSVACGGLD 129
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 314 DLVIRLFDV-VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 370
D +RL+D+ + R VR + GH I F DG+ + DG+ R++D+ Q+
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWN--LEKRRLQ-SVIREAHDNAIISLHFFANEPVL 61
VT++AFS G+ LL +G S+G +W+ L + L ++ +H+ I L ++ L
Sbjct: 301 VTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 62 MSASADNSIKMWIF 75
+ S D ++K+W F
Sbjct: 360 CTGSWDKNLKIWAF 373
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
V+ V N +++ D+ +I ++DV ++ + GHTDRI + + K +S+ MD
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLI-VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331
Query: 357 GSLRIWDV 364
++RIWD+
Sbjct: 332 TTIRIWDL 339
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 266 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI---VYHRVNGLLATVADDLVIRLFDV 322
+++S Y + VWD +K + + +I +Y + + D IR++D+
Sbjct: 282 IVVSGSYDNTLIVWDVA--QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Query: 323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVDVS-IT 380
++ +GHT + S+ K+L+S+ DGS+R WD +R+ H ++S IT
Sbjct: 340 ENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 397
Query: 381 ALSLSPNMDVLATAHVDQNGVY 402
+S N +L + +Q +Y
Sbjct: 398 TFYVSDN--ILVSGSENQFNIY 417
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF--FANEPV 60
G V AL ++ G +L SG++ + +W+++K V E H++ + L + N
Sbjct: 163 GGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKY 219
Query: 61 LMSASADNSIKMW-------------------IFDTTDGDPRLLRFRSGHSAPPLCIRFY 101
+++ S DN++ +W +F T + +P + GH A +
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-- 277
Query: 102 ANGRHILSAGQDRAFRLFSVIQ 123
+G ++S D ++ V Q
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQ 299
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 60
+RG + ++ S ++ SG+ + +W++ + + ++ H + I S +
Sbjct: 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR 324
Query: 61 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 120
+SAS D +I++W D +G+ L+ GH+A +R + + ++SA D + R +
Sbjct: 325 CISASMDTTIRIW--DLENGE--LMYTLQGHTALVGLLRL--SDKFLVSAAADGSIRGWD 378
Query: 121 VIQDQQSRELSQRHV 135
+ SR+ S H
Sbjct: 379 A--NDYSRKFSYHHT 391
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
T ADD +IR++D + + + + GH + ++ G L+S D ++R+WD+
Sbjct: 137 TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDI 190
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 306 GLLATVADDLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
G+L + + D +R++D+ FEGH T R D ++ K++++ D +L +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 364 V 364
+
Sbjct: 234 L 234
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 16 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 75
P + + G I+++ + + I A D++ + F P +++ ++ +K+W F
Sbjct: 161 PEIVTVGEDGRINLFRADHKEAVRTIDNA-DSSTLHAVTFLRTPEILTVNSIGQLKIWDF 219
Query: 76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRH 134
+P + +G P C+ + N +H++ + GQD ++ V Q L + H
Sbjct: 220 RQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAH 279
Query: 135 VAK 137
A+
Sbjct: 280 EAE 282
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 15 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMW 73
Q ++A+G G++SIW++ + + + +AH+ + +HF + P L + S D S+ W
Sbjct: 249 QHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Query: 74 IFDTTDGDPRLLRFRSGHSA 93
T + L + G S+
Sbjct: 309 DASTDVPEKSSLFHQGGRSS 328
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 63/319 (19%), Positives = 119/319 (37%), Gaps = 34/319 (10%)
Query: 86 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXX 145
R GH LC+ + + R I+S+ QD ++ S ++ H
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVW------DSFTTNKEHAVTMPCTWVMA 111
Query: 146 XXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 205
IA C + + C+V D + + ++ + + L C + +
Sbjct: 112 CAYAPSGCAIA--CGGLDNK--CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV--GVACDST 263
+ T S G A+ ++++SG S+ + H +V+ +A T
Sbjct: 168 QILTASGDGTCAL----------WDVESGQLLQSF--------HGHGADVLCLDLAPSET 209
Query: 264 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV-YHRVNGLLATVADDLVIRLFDV 322
+S G VWD + +E S V V Y+ A+ +DD RL+D+
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Query: 323 VALRMVRKF--EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSI 379
A R V + E + FS G+ L + D ++ +WDV+ ++ + + +
Sbjct: 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV 329
Query: 380 TALSLSPNMDVLATAHVDQ 398
+ L +SP+ + D
Sbjct: 330 STLRVSPDGTAFCSGSWDH 348
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362
LL +D I ++DV+ V GH +R++ S DG S D +LR+W
Sbjct: 298 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 5 VTALAFS-SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 63
++A +F+ SD Q L ASG G ++W++E +L H ++ L +E
Sbjct: 157 LSACSFTNSDMQILTASG--DGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTF 213
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123
S K ++D G + ++ H + +R+Y +G S D RL+ +
Sbjct: 214 VSGGCDKKAMVWDMRSG--QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271
Query: 124 DQQ 126
D++
Sbjct: 272 DRE 274
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN- 103
H N + + F ++ +++AS D + +W D G +LL+ GH A LC+ +
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALW--DVESG--QLLQSFHGHGADVLCLDLAPSE 208
Query: 104 -GRHILSAGQDR 114
G +S G D+
Sbjct: 209 TGNTFVSGGCDK 220
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
+ T +DDL I+++D V EGH ++ F ++S DG+L+IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
RG + +P + + + I IW+ + + + + E H + + F P++
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPII 243
Query: 62 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFS 120
+S S D ++K+W T + + L S CI + GR + +++G D F + S
Sbjct: 244 ISGSEDGTLKIWNSSTYKVE-KTLNVGLERS---WCIATHPTGRKNYIASGFDNGFTVLS 299
Query: 121 VIQDQ 125
+ D+
Sbjct: 300 LGNDE 304
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 255 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI--VYHRVNGLLATVA 312
V G+ T +++ Y G +++W+++ + +V + V+ R N ++ +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-S 74
Query: 313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
DD IR+F+ V FE H D I ++LS D ++++W+
Sbjct: 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 102
EAH + I S+ +P ++S S D ++K+W + + + L + GH +C+ F
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVAFNP 150
Query: 103 NGRHILSAG-QDRAFRLFSVIQDQQSRELS 131
++G DR +++S+ Q + L+
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLM 62
V +AF+ ASG + +W+L + + + + + ++ ++P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 120
+AS D +IK+W + T L GH + F+ I+S +D ++++
Sbjct: 203 TASDDLTIKIWDYQTKSCVATL----EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 15 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMW 73
+P + SG+ + +WN E E H++ ++ + F +P S D ++K+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
+ T +DDL I+++D V EGH ++ F ++S DG+L+IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 61
RG + +P + + + I IW+ + + + + E H + + F P++
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPII 243
Query: 62 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFS 120
+S S D ++K+W T + + L S CI + GR + +++G D F + S
Sbjct: 244 ISGSEDGTLKIWNSSTYKVE-KTLNVGLERS---WCIATHPTGRKNYIASGFDNGFTVLS 299
Query: 121 VIQDQ 125
+ D+
Sbjct: 300 LGNDE 304
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 255 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI--VYHRVNGLLATVA 312
V G+ T +++ Y G +++W+++ + +V + V+ R N ++ +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-S 74
Query: 313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
DD IR+F+ V FE H D I ++LS D ++++W+
Sbjct: 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 102
EAH + I S+ +P ++S S D ++K+W + + + L + GH +C+ F
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVAFNP 150
Query: 103 NGRHILSAG-QDRAFRLFSVIQDQQSRELS 131
++G DR +++S+ Q + L+
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLM 62
V +AF+ ASG + +W+L + + + + + ++ ++P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 120
+AS D +IK+W + T L GH + F+ I+S +D ++++
Sbjct: 203 TASDDLTIKIWDYQTKSCVATL----EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 15 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMW 73
+P + SG+ + +WN E E H++ ++ + F +P S D ++K+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-LAR 368
+ + D IR++D+ + +GHT + S+ K+L+S+ DGS+R WD +R
Sbjct: 327 SASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR 384
Query: 369 QIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVY 402
+ H ++S IT +S N +L + +Q +Y
Sbjct: 385 KFSYHHTNLSAITTFYVSDN--ILVSGSENQFNIY 417
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 26/144 (18%)
Query: 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF--FANEPV 60
G V AL ++ G +L SG++ + +W+++K V E H++ + L + N
Sbjct: 163 GGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKY 219
Query: 61 LMSASADNSIKMW-------------------IFDTTDGDPRLLRFRSGHSAPPLCIRFY 101
+++ S DN++ +W +F T + +P + GH A +
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS-- 277
Query: 102 ANGRHILSAGQDRAFRLFSVIQDQ 125
+G ++S D ++ V Q +
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQXK 301
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356
V+ V N +++ D+ +I ++DV + + GHTDRI + + K +S+ D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLI-VWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXD 331
Query: 357 GSLRIWDV 364
++RIWD+
Sbjct: 332 TTIRIWDL 339
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
T ADD IR++D + + + + GH + ++ G L+S D ++R+WD+
Sbjct: 137 TGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDI 190
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 60
+RG ++ S ++ SG+ + +W++ + + ++ H + I S +
Sbjct: 266 LRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYIL-SGHTDRIYSTIYDHERKR 324
Query: 61 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 120
+SAS D +I++W D +G+ L GH+A +R + + ++SA D + R +
Sbjct: 325 CISASXDTTIRIW--DLENGE--LXYTLQGHTALVGLLRL--SDKFLVSAAADGSIRGWD 378
Query: 121 VIQDQQSRELSQRHV 135
+ SR+ S H
Sbjct: 379 A--NDYSRKFSYHHT 391
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 306 GLLATVADDLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
G+L + + D +R++D+ FEGH T R D ++ K++++ D +L +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 364 V 364
+
Sbjct: 234 L 234
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
+ T +DDL I+++D V EGH ++ F ++S DG+L+IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 74
+P + + + I IW+ + + + + E H + + F P+++S S D ++K+W
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSREL 130
T ++ + + CI + GR + +++G D F + S+ D+ + L
Sbjct: 257 SSTY----KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSL 309
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 102
EAH + I S+ +P ++S S D ++K+W ++ + L + GH +C+ F
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---NWALEQTFEGHEHFVMCVAFNP 150
Query: 103 NGRHILSAG-QDRAFRLFSVIQDQQSRELS 131
++G DR +++S+ Q + L+
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 255 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI--VYHRVNGLLATVA 312
V G+ T +++ Y G +++W+++ + +V + V+ R N ++ +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-S 74
Query: 313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
DD IR+F+ V FE H D I ++LS D ++++W+
Sbjct: 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLM 62
V +AF+ ASG + +W+L + + + + + ++ ++P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 120
+AS D +IK+W + T L GH + F+ I+S +D ++++
Sbjct: 203 TASDDLTIKIWDYQTKSCVATL----EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 15 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMW 73
+P + SG+ + +WN E E H++ ++ + F +P S D ++K+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 74 I-------FDTTDGDPRLLRFRSGHSAP 94
F T G R + + + P
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
+ T +DDL I+++D V EGH ++ F ++S DG+L+IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 74
+P + + + I IW+ + + + + E H + + F P+++S S D ++K+W
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSREL 130
T + L + CI + GR + +++G D F + S+ D+ + L
Sbjct: 257 SSTYKVEKTL----NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSL 309
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 255 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI--VYHRVNGLLATVA 312
V G+ T +++ Y G +++W+++ + +V + V+ R N ++ +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-S 74
Query: 313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363
DD IR+F+ V FE H D I ++LS D ++++W+
Sbjct: 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 102
EAH + I S+ +P ++S S D ++K+W ++ + L + GH +C+ F
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---NWALEQTFEGHEHFVMCVAFNP 150
Query: 103 NGRHILSAG-QDRAFRLFSVIQDQQSRELS 131
++G DR +++S+ Q + L+
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLM 62
V +AF+ ASG + +W+L + + + + + ++ ++P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 63 SASADNSIKMWIFDTT------DGDPRLLRFRSGHSAPPLCI 98
+AS D +IK+W + T +G + F H P+ I
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 15 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMW 73
+P + SG+ + +WN E E H++ ++ + F +P S D ++K+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 74 I-------FDTTDGDPRLLRFRSGHSAP 94
F T G R + + + P
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 65/170 (38%), Gaps = 24/170 (14%)
Query: 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY-AHNGEVVGVACDST 263
V+ S CGN+ L +A F+ + I + + D + H EV VA +
Sbjct: 64 VRKVAWSPCGNY--LASAS-----FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS 116
Query: 264 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLV---------KIVYHRVNGLLATVADD 314
L+ + + VW+ D E C V +V+H LLA+ + D
Sbjct: 117 GNLLATCSRDKSVWVWEVDEED-----EYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171
Query: 315 LVIRLFDVVALRMV--RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362
++L+ V EGH + F G+ L S D ++RIW
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQSV-IREAHDNAIISLHFFANEPVLM 62
V ++A++ G LLA+ + + +W + E+ + V + +H + + + ++ +L
Sbjct: 108 VKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166
Query: 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
SAS D+++K+ + + D GH + + F +G+ + S DR R++
Sbjct: 167 SASYDDTVKL--YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 10/150 (6%)
Query: 258 VACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVGC--SLVKIVYHRVNGLLATVAD 313
+A + TL+ S G I++W +G KS G ++ K+ + LA+ +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 314 DLVIRLF--DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 371
D ++ + V EGH + + ++ G L + D S+ +W+V + +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 372 AIHVDVSITA----LSLSPNMDVLATAHVD 397
+ V S T + P+ ++LA+A D
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYD 171
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 12/160 (7%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG---RDLKSRWEVGCSLVKIVYHRVNG 306
H+ EV G+A S + S G +++WD + + K+ V + N
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN- 273
Query: 307 LLATVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM--DGSLRIW 362
LLAT D I ++ V + + ++T +S K ++S+ D +L IW
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDAGS-QVTSLIWSPHSKEIMSTHGFPDNNLSIW 332
Query: 363 DVI---LARQIDAIHVDVSITALSLSPNMDVLATAHVDQN 399
L +Q+D D + +LSP+ +L+TA D+N
Sbjct: 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN 372
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
+A + +GH+ + + DG L S G D ++IWD
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA 246
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 32/152 (21%)
Query: 229 FNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK 287
F+L++ + ++ SY+ +S Y G+V+G I ++D + R++K
Sbjct: 481 FDLKTPLRAKPSYISISPSETYIAAGDVMG-----------------KILLYDLQSREVK 523
Query: 288 -SRWEVGCSLVKIVYHRV-----------NGLLATVADDLVIRLFDVV-ALRMVRKFEGH 334
SRW S + + + L+AT + D I ++ V +++++ H
Sbjct: 524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 583
Query: 335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366
D + + + E L+SSG D ++ W+V+L
Sbjct: 584 KDGVNNLLW-ETPSTLVSSGADACIKRWNVVL 614
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 1 MRGAVTALAFSSDGQPLLASGASSGVISIWN-LEKRRL--QSVIREAHDNAIISLHFFAN 57
VT +A+ S+ L+AS SG + +W LEK L + HD+ + +L F++
Sbjct: 93 TEAGVTDVAWVSEKGILVAS--DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD 150
Query: 58 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI-LSAGQDRAF 116
+S D S+K+W +L+ + HS+ C+ I LS G+D
Sbjct: 151 GTQAVSGGKDFSVKVWDL----SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI 206
Query: 117 RLF 119
L+
Sbjct: 207 LLW 209
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 78/200 (39%), Gaps = 18/200 (9%)
Query: 291 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR--MVRKFEG--HTDRITDFCFSED 346
E G + V V + G+L +D + L++++ +V KF H D + D
Sbjct: 94 EAGVTDVAWVSEK--GIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD 150
Query: 347 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 405
G +S G D S+++WD+ + + + S + ++ P D + + + + LW
Sbjct: 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Query: 406 NRCMFSGDSNIDSYASGKEIVSVKM-PSVSSVEGCQDE-------NSSQPDVHRTDRVPK 457
R + ID AS SV P C DE N PD +T V
Sbjct: 211 TRKPKPA-TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS 269
Query: 458 DSF-GLPTFKQQIPDLVTLS 476
+ GL P L ++S
Sbjct: 270 QNITGLAYSYHSSPFLASIS 289
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 251 HNGEVVGVA-CDSTNTLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVKIV----YHR 303
H G V VA C + ++ + G D I++W+ S + + I+ Y
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 334
Query: 304 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362
+ + LVI + +A V + +GHT R+ S DG + S+ D +LR+W
Sbjct: 335 LISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMS 63
++++A+ +G LA G SS + +W++++ +RL+++ +H + SL + N +L S
Sbjct: 150 ISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSW--NSYILSS 204
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
S I D + + SGHS +R+ +GRH+ S G D ++
Sbjct: 205 GSRSGHIHH--HDVRVAEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 251 HNGEVVGVA-CDSTNTLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVKIV----YHR 303
H G V VA C + ++ + G D I++W+ S + + I+ Y
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 345
Query: 304 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362
+ + LVI + +A V + +GHT R+ S DG + S+ D +LR+W
Sbjct: 346 LISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMS 63
++++A+ +G LA G SS + +W++++ +RL+++ +H + SL + N +L S
Sbjct: 161 ISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSW--NSYILSS 215
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
S I D + + SGHS +R+ +GRH+ S G D ++
Sbjct: 216 GSRSGHIHH--HDVRVAEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL--SPNMDVL 391
HT + D C+S+DG + ++ D + ++WD+ + I D + + +PN +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV 144
Query: 392 ATAHVDQNGVYLWVNR 407
T D+ + W R
Sbjct: 145 MTGSWDKT-LKFWDTR 159
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 303 RVNGLLATVADDLVIRLFDV----VALRMVRKFEG------------HTDRITDFCFSED 346
R + +LAT + D ++L+DV L + + G H ++ CF+ D
Sbjct: 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256
Query: 347 GKWLLSSGMDGSLRIWD 363
G LL+ G D +R+W+
Sbjct: 257 GLHLLTVGTDNRMRLWN 273
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 14/117 (11%)
Query: 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMW-- 73
L+A G + + +L+ ++ + H I+++ + + +L +ASAD+ +K+W
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 74 --------IFDTTDGDPR--LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 120
D +G + + H+ + F ++G H+L+ G D RL++
Sbjct: 217 RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMS 63
++++A+ +G LA G SS + +W++++ +RL+++ +H + SL + N +L S
Sbjct: 70 ISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSW--NSYILSS 124
Query: 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119
S I D + + SGHS +R+ +GRH+ S G D ++
Sbjct: 125 GSRSGHIHH--HDVRVAEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 251 HNGEVVGVA-CDSTNTLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVKIV----YHR 303
H G V VA C + ++ + G D I++W+ S + + I+ Y
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 254
Query: 304 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362
+ + LVI + +A V + +GHT R+ S DG + S+ D +LR+W
Sbjct: 255 LISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 258 VACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRWEVGCSLVKIVYHRV-----------N 305
++ + T + + G I ++D + R++K SRW S + + +
Sbjct: 494 ISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553
Query: 306 GLLATVADDLVIRLFDVV-ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364
L+AT + D I ++ V ++++ H D + + + E L+SSG D ++ W+V
Sbjct: 554 DLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWNV 612
Query: 365 IL 366
+L
Sbjct: 613 VL 614
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Query: 334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV---DVSITALSLSPNMDV 390
H+ + F++ G+ L S+G DG LR WDV +I +++ D+ I D+
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE-------DI 352
Query: 391 LATAHVDQNG 400
LA VD++G
Sbjct: 353 LA---VDEHG 359
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 249 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI 299
+AH+ V+ ++ + + + SAG+ G ++ WD K ++ + + C ++I
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 348
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Query: 333 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV---DVSITALSLSPNMD 389
H+ + F++ G+ L S+G DG LR WDV +I +++ D+ I D
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE-------D 341
Query: 390 VLATAHVDQNG 400
+LA VD++G
Sbjct: 342 ILA---VDEHG 349
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 249 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI 299
+AH+ V+ ++ + + + SAG+ G ++ WD K ++ + + C ++I
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 338
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN---------AIISLHFF 55
V +LA++ + AS SS SIW+L+ ++ VI ++ + +++ H
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPK 225
Query: 56 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDR 114
+ V + +DN + I+D + + L GH L + + H +LS+G+D
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Query: 115 AFRLFSVIQDQQSRELSQR 133
L++ +Q + R
Sbjct: 286 TVLLWNPESAEQLSQFPAR 304
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 301 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 360
++ N LL + +DD +R++ F GH+ I + D K ++S MDGS+R
Sbjct: 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVR 313
Query: 361 IW 362
+W
Sbjct: 314 LW 315
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 15/127 (11%)
Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGL 307
H +V V + T +IS +W+ + +E+ G S + H +G
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 308 LAT----VADDL--------VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355
L V DD I ++ + K GH I+ F++ K LLS+
Sbjct: 208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD 267
Query: 356 DGSLRIW 362
DG+LRIW
Sbjct: 268 DGTLRIW 274
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 262 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG----LLATVADDLVI 317
+++ ++++ G++ + + G++L W + K+ + +N LAT + D +
Sbjct: 219 ASSRMVVTGDNVGNVILLNMDGKEL---WNLRMHKKKVTHVALNPCCDWFLATASVDQTV 275
Query: 318 RLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSGMDGSLRI-----WDVILA 367
+++D+ +R F H + CFS DG LL++ +R+ WD L
Sbjct: 276 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 333
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 262 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG----LLATVADDLVI 317
+++ ++++ G++ + + G++L W + K+ + +N LAT + D +
Sbjct: 219 ASSRMVVTGDNVGNVILLNMDGKEL---WNLRMHKKKVTHVALNPCCDWFLATASVDQTV 275
Query: 318 RLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSGMDGSLRI-----WDVILA 367
+++D+ +R F H + CFS DG LL++ +R+ WD L
Sbjct: 276 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 333
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 20/170 (11%)
Query: 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 309
H G + + D ++ IK+WD + W+ + ++ +
Sbjct: 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL 131
Query: 310 TVADDLV-----IRLFDV-----------VALRMVRKFEGHT--DRITDFCFSEDGKWLL 351
+ D+++ I ++++ V+ + K H D T +S GK+++
Sbjct: 132 AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYII 191
Query: 352 SSGMDGSLRIWDVILARQ-IDAIHV-DVSITALSLSPNMDVLATAHVDQN 399
+ DG + +DV + +D+I + + SI+ + SP++ T+ D N
Sbjct: 192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 262 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG----LLATVADDLVI 317
+++ ++++ G++ + + G++L W + K+ + +N LAT + D +
Sbjct: 220 ASSRMVVTGDNVGNVILLNMDGKEL---WNLRMHKKKVTHVALNPCCDWFLATASVDQTV 276
Query: 318 RLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSGMDGSLRI-----WDVILA 367
+++D+ +R F H + CFS DG LL++ +R+ WD L
Sbjct: 277 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 334
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 16 PLLASGASSGVISIWNLEKRRLQS------VIREAHDNAIISLHFFANEPVLMSASADNS 69
LLA+G+ +SIW E+ ++ I E H+N + + + + L + S D S
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130
Query: 70 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 124
+ +W D + + + HS + ++ + + S+ D R++ D
Sbjct: 131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVW 279
HNGEV V+ + T T++ SAG G +++W
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVW 279
HNGEV V+ + T T++ SAG G +++W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVW 279
HNGEV V+ + T T++ SAG G +++W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 4 AVTALAFSSDGQPLLASGASSGVISIWNLEK 34
++T+ A S P L +G+ GVI IWNL++
Sbjct: 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKE 95
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
V ++ FS + L +G S G+IS WNL+ R+ + ++++++ + ++ +L A
Sbjct: 254 VNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310
Query: 65 SADNSIK 71
++D++ K
Sbjct: 311 TSDDTFK 317
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
V ++ FS + L +G S G+IS WNL+ R+ + ++++++ + ++ +L A
Sbjct: 254 VNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310
Query: 65 SADNSIK 71
++D++ K
Sbjct: 311 TSDDTFK 317
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
V ++ FS + L +G S G+IS WNL+ R+ + ++++++ + ++ +L A
Sbjct: 254 VNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310
Query: 65 SADNSIK 71
++D++ K
Sbjct: 311 TSDDTFK 317
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64
V ++ FS + L +G S G+IS WNL+ R+ + ++++++ + ++ +L A
Sbjct: 254 VNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310
Query: 65 SADNSIK 71
++D++ K
Sbjct: 311 TSDDTFK 317
>pdb|3LX7|A Chain A, Crystal Structure Of A Novel Tudor Domain-Containing
Protein Sgf29
Length = 174
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 126
L F+ G PPLC A+G ++ G A R+ +V D+Q
Sbjct: 14 LYFQGGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQ 55
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 330 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNM 388
K+E H D ++ G +S D +++WD+ + + + +T ++ SP+
Sbjct: 123 KYE-HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181
Query: 389 DVLATAHVDQNGVYLWVNRC 408
D + + + N + LW RC
Sbjct: 182 DSVFLSCSEDNRILLWDTRC 201
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 15 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI------ISLHFFANEPVLMSASADN 68
Q LA+G G + IWNLE + + H I L P +++ S D
Sbjct: 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139
Query: 69 SIKMWIFDTTDGDPR 83
++K+W DPR
Sbjct: 140 TVKVW-------DPR 147
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK 287
HNG+V GV + +++ G + VW KGR K
Sbjct: 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,199,284
Number of Sequences: 62578
Number of extensions: 767563
Number of successful extensions: 2279
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 599
length of query: 685
length of database: 14,973,337
effective HSP length: 105
effective length of query: 580
effective length of database: 8,402,647
effective search space: 4873535260
effective search space used: 4873535260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)