Query 005656
Match_columns 685
No_of_seqs 1048 out of 3673
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 11:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1539 WD repeat protein [Gen 100.0 1E-110 3E-115 849.1 52.0 658 2-685 244-910 (910)
2 KOG0291 WD40-repeat-containing 100.0 3.8E-55 8.3E-60 440.4 52.1 638 2-681 96-852 (893)
3 PF04192 Utp21: Utp21 specific 100.0 2.5E-55 5.3E-60 409.1 19.2 214 460-682 17-237 (237)
4 KOG0271 Notchless-like WD40 re 100.0 6.3E-53 1.4E-57 392.9 29.5 322 1-405 114-479 (480)
5 KOG0306 WD40-repeat-containing 100.0 3.8E-47 8.2E-52 382.7 39.9 603 1-681 106-855 (888)
6 KOG0319 WD40-repeat-containing 100.0 2E-45 4.4E-50 370.3 35.6 544 1-680 104-767 (775)
7 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-46 6.6E-51 353.2 23.4 280 2-363 175-458 (459)
8 KOG0271 Notchless-like WD40 re 100.0 1.1E-45 2.4E-50 344.5 25.1 314 1-363 156-479 (480)
9 KOG0272 U4/U6 small nuclear ri 100.0 2.8E-44 6E-49 339.9 23.8 281 44-405 173-458 (459)
10 KOG0286 G-protein beta subunit 100.0 1.8E-42 3.8E-47 312.8 32.4 284 1-363 54-343 (343)
11 KOG0273 Beta-transducin family 100.0 1.1E-40 2.4E-45 319.5 32.6 324 1-407 177-523 (524)
12 KOG0315 G-protein beta subunit 100.0 7.9E-40 1.7E-44 288.9 32.2 292 13-384 8-308 (311)
13 KOG0318 WD40 repeat stress pro 100.0 1.7E-38 3.7E-43 308.4 42.9 373 1-412 146-565 (603)
14 KOG0279 G protein beta subunit 100.0 1.5E-39 3.3E-44 292.1 31.9 284 1-365 14-313 (315)
15 KOG0291 WD40-repeat-containing 100.0 5.7E-39 1.2E-43 324.0 37.8 321 3-406 308-708 (893)
16 KOG0279 G protein beta subunit 100.0 6.8E-39 1.5E-43 288.0 31.8 293 36-407 6-313 (315)
17 KOG0295 WD40 repeat-containing 100.0 7.6E-40 1.6E-44 304.3 25.5 282 1-406 107-405 (406)
18 KOG0286 G-protein beta subunit 100.0 1.2E-38 2.7E-43 287.9 32.3 291 38-405 48-343 (343)
19 KOG0318 WD40 repeat stress pro 100.0 3.5E-37 7.6E-42 299.3 40.0 366 1-406 189-601 (603)
20 KOG0319 WD40-repeat-containing 100.0 2.3E-38 5.1E-43 319.5 32.1 389 3-408 63-578 (775)
21 KOG0296 Angio-associated migra 100.0 8.4E-38 1.8E-42 290.9 33.3 322 1-406 63-397 (399)
22 KOG0310 Conserved WD40 repeat- 100.0 7.7E-37 1.7E-41 295.2 35.0 451 3-684 27-484 (487)
23 KOG0284 Polyadenylation factor 100.0 4.3E-38 9.3E-43 296.6 22.0 281 3-408 97-381 (464)
24 KOG0285 Pleiotropic regulator 100.0 4.7E-37 1E-41 284.6 27.5 280 1-407 150-439 (460)
25 KOG0315 G-protein beta subunit 100.0 1.6E-36 3.4E-41 268.0 28.5 269 59-408 11-289 (311)
26 KOG0265 U5 snRNP-specific prot 100.0 1.3E-36 2.9E-41 276.0 27.9 280 1-363 46-336 (338)
27 KOG0645 WD40 repeat protein [G 100.0 1.1E-35 2.3E-40 266.3 30.2 284 1-365 13-311 (312)
28 KOG0263 Transcription initiati 100.0 6.8E-37 1.5E-41 312.5 25.5 270 4-366 380-650 (707)
29 KOG0273 Beta-transducin family 100.0 3.2E-35 6.8E-40 282.2 31.8 278 3-365 236-523 (524)
30 KOG0296 Angio-associated migra 100.0 1.8E-35 3.9E-40 275.4 28.8 291 1-365 105-398 (399)
31 cd00200 WD40 WD40 domain, foun 100.0 1E-34 2.2E-39 291.5 36.7 281 1-363 8-289 (289)
32 KOG0282 mRNA splicing factor [ 100.0 8.4E-37 1.8E-41 294.3 19.6 288 36-405 205-503 (503)
33 KOG0293 WD40 repeat-containing 100.0 5.2E-36 1.1E-40 282.6 23.6 291 39-407 218-513 (519)
34 KOG0293 WD40 repeat-containing 100.0 7.6E-36 1.6E-40 281.5 24.3 284 1-366 223-514 (519)
35 KOG0263 Transcription initiati 100.0 6E-36 1.3E-40 305.6 23.2 203 200-411 449-653 (707)
36 KOG0266 WD40 repeat-containing 100.0 8.8E-35 1.9E-39 307.1 32.2 284 1-365 158-454 (456)
37 KOG0265 U5 snRNP-specific prot 100.0 1.3E-34 2.9E-39 263.0 28.2 280 43-403 44-334 (338)
38 cd00200 WD40 WD40 domain, foun 100.0 5.6E-34 1.2E-38 286.1 35.6 285 39-405 3-289 (289)
39 KOG0313 Microtubule binding pr 100.0 2E-34 4.2E-39 269.7 27.9 307 1-408 104-419 (423)
40 KOG0306 WD40-repeat-containing 100.0 2.3E-33 5E-38 283.4 33.2 370 1-405 148-662 (888)
41 KOG0266 WD40 repeat-containing 100.0 1.9E-33 4.2E-38 297.0 32.4 289 39-406 152-453 (456)
42 PLN00181 protein SPA1-RELATED; 100.0 9.3E-33 2E-37 314.1 39.3 279 1-364 482-792 (793)
43 PLN00181 protein SPA1-RELATED; 100.0 1.4E-32 3.1E-37 312.6 40.3 303 24-406 457-792 (793)
44 KOG0316 Conserved WD40 repeat- 100.0 2E-33 4.3E-38 246.4 25.2 278 1-405 16-297 (307)
45 KOG0282 mRNA splicing factor [ 100.0 2.3E-34 4.9E-39 277.6 17.7 281 1-363 213-503 (503)
46 KOG0281 Beta-TrCP (transducin 100.0 2.8E-34 6.1E-39 265.1 17.1 275 3-370 198-482 (499)
47 KOG0292 Vesicle coat complex C 100.0 2E-32 4.4E-37 280.8 32.0 335 2-411 9-401 (1202)
48 KOG0276 Vesicle coat complex C 100.0 5.3E-33 1.1E-37 275.2 26.5 279 1-403 12-295 (794)
49 KOG0278 Serine/threonine kinas 100.0 8.7E-34 1.9E-38 250.7 17.7 285 1-369 13-301 (334)
50 KOG1407 WD40 repeat protein [F 100.0 4.4E-32 9.5E-37 241.8 28.3 278 40-398 15-294 (313)
51 KOG0643 Translation initiation 100.0 8E-33 1.7E-37 247.2 23.5 291 1-366 9-318 (327)
52 KOG0645 WD40 repeat protein [G 100.0 1.3E-31 2.8E-36 240.2 31.1 290 37-406 6-310 (312)
53 KOG1408 WD40 repeat protein [F 100.0 5E-32 1.1E-36 271.7 31.8 395 1-408 77-714 (1080)
54 KOG0275 Conserved WD40 repeat- 100.0 1.6E-33 3.5E-38 257.7 18.9 282 2-363 213-507 (508)
55 KOG0281 Beta-TrCP (transducin 100.0 7.4E-34 1.6E-38 262.3 15.1 270 45-406 196-476 (499)
56 KOG0292 Vesicle coat complex C 100.0 2.5E-32 5.5E-37 280.1 26.1 279 44-404 7-318 (1202)
57 KOG0276 Vesicle coat complex C 100.0 2.1E-31 4.6E-36 263.9 30.5 236 3-319 56-295 (794)
58 KOG0278 Serine/threonine kinas 100.0 2.8E-32 6.2E-37 241.1 19.6 281 43-406 11-296 (334)
59 KOG0295 WD40 repeat-containing 100.0 4.1E-32 8.9E-37 252.9 21.4 250 37-409 100-366 (406)
60 KOG0640 mRNA cleavage stimulat 100.0 8.8E-32 1.9E-36 245.1 22.9 289 1-365 111-426 (430)
61 KOG0288 WD40 repeat protein Ti 100.0 1.6E-32 3.4E-37 259.6 17.6 276 1-362 174-458 (459)
62 KOG0275 Conserved WD40 repeat- 100.0 4.7E-32 1E-36 248.1 19.2 290 39-405 206-507 (508)
63 KOG0285 Pleiotropic regulator 100.0 2E-31 4.4E-36 247.3 22.2 248 37-410 143-392 (460)
64 KOG0284 Polyadenylation factor 100.0 1.8E-32 4E-37 258.7 15.5 240 1-322 137-379 (464)
65 KOG0288 WD40 repeat protein Ti 100.0 5.4E-32 1.2E-36 256.0 18.3 285 38-405 168-459 (459)
66 KOG0973 Histone transcription 100.0 1.5E-30 3.3E-35 275.3 29.4 284 2-406 13-354 (942)
67 KOG1446 Histone H3 (Lys4) meth 100.0 2.4E-29 5.1E-34 231.5 33.5 281 2-365 14-303 (311)
68 KOG1407 WD40 repeat protein [F 100.0 5.1E-30 1.1E-34 228.6 27.7 281 1-365 19-311 (313)
69 KOG0643 Translation initiation 100.0 5.1E-30 1.1E-34 229.3 27.1 289 44-408 8-318 (327)
70 KOG0283 WD40 repeat-containing 100.0 6.3E-31 1.4E-35 271.4 24.4 281 1-408 266-577 (712)
71 KOG0289 mRNA splicing factor [ 100.0 3.6E-30 7.7E-35 245.0 27.2 281 4-364 221-505 (506)
72 KOG0268 Sof1-like rRNA process 100.0 1.7E-32 3.8E-37 255.0 10.1 354 38-509 59-417 (433)
73 KOG0274 Cdc4 and related F-box 100.0 5.7E-30 1.2E-34 268.8 29.2 280 2-373 208-490 (537)
74 KOG0640 mRNA cleavage stimulat 100.0 2.7E-30 5.8E-35 235.5 23.1 293 43-407 109-426 (430)
75 KOG0772 Uncharacterized conser 100.0 1.9E-30 4.2E-35 251.7 22.2 297 1-365 166-487 (641)
76 KOG0305 Anaphase promoting com 100.0 2.6E-29 5.6E-34 253.5 28.7 275 8-367 183-463 (484)
77 KOG1446 Histone H3 (Lys4) meth 100.0 4.4E-28 9.6E-33 223.1 33.4 281 39-405 8-301 (311)
78 KOG0647 mRNA export protein (c 100.0 7E-29 1.5E-33 226.0 25.9 269 3-353 28-311 (347)
79 KOG0316 Conserved WD40 repeat- 100.0 3.8E-29 8.2E-34 219.6 21.9 244 83-407 8-257 (307)
80 KOG1539 WD repeat protein [Gen 100.0 1.2E-27 2.6E-32 245.3 36.2 377 5-410 162-609 (910)
81 KOG0299 U3 snoRNP-associated p 100.0 1.3E-28 2.8E-33 236.6 27.0 274 1-398 141-447 (479)
82 KOG0294 WD40 repeat-containing 100.0 2.5E-28 5.3E-33 223.7 27.4 265 17-367 3-283 (362)
83 KOG0300 WD40 repeat-containing 100.0 3.9E-29 8.5E-34 228.5 21.9 289 1-367 147-478 (481)
84 PTZ00421 coronin; Provisional 100.0 1.7E-27 3.7E-32 250.3 34.3 265 4-388 22-315 (493)
85 KOG0277 Peroxisomal targeting 100.0 1.1E-28 2.3E-33 219.3 20.9 280 6-364 12-308 (311)
86 KOG0641 WD40 repeat protein [G 100.0 1.2E-26 2.6E-31 202.5 32.3 284 3-406 33-348 (350)
87 KOG2096 WD40 repeat protein [G 100.0 1.3E-27 2.8E-32 218.9 26.0 291 1-363 85-400 (420)
88 KOG0772 Uncharacterized conser 100.0 6.1E-28 1.3E-32 234.5 24.6 308 37-404 159-484 (641)
89 KOG2106 Uncharacterized conser 100.0 3.9E-26 8.3E-31 221.4 36.7 369 1-405 103-519 (626)
90 KOG0310 Conserved WD40 repeat- 100.0 5.1E-28 1.1E-32 234.3 23.4 236 2-320 68-306 (487)
91 KOG1036 Mitotic spindle checkp 100.0 3.5E-27 7.5E-32 216.0 27.5 268 2-355 13-294 (323)
92 KOG2055 WD40 repeat protein [G 100.0 8.9E-28 1.9E-32 230.6 24.5 285 46-407 213-512 (514)
93 KOG0274 Cdc4 and related F-box 100.0 2.4E-27 5.2E-32 249.1 29.8 273 44-408 206-483 (537)
94 KOG0308 Conserved WD40 repeat- 100.0 2.4E-28 5.2E-33 243.8 20.2 328 7-406 29-392 (735)
95 KOG0294 WD40 repeat-containing 100.0 4.5E-27 9.7E-32 215.5 26.7 237 1-325 42-283 (362)
96 PTZ00420 coronin; Provisional 100.0 1.2E-26 2.6E-31 244.6 33.6 248 21-347 50-318 (568)
97 KOG0277 Peroxisomal targeting 100.0 1.1E-27 2.4E-32 212.9 21.4 279 50-406 12-308 (311)
98 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 6.5E-26 1.4E-30 230.0 37.6 284 17-386 3-300 (300)
99 KOG1063 RNA polymerase II elon 100.0 3.7E-27 8.1E-32 237.0 27.5 376 7-407 150-648 (764)
100 KOG0268 Sof1-like rRNA process 100.0 1.3E-28 2.8E-33 229.3 14.7 283 1-371 65-351 (433)
101 KOG0639 Transducin-like enhanc 100.0 9.2E-28 2E-32 232.2 20.8 283 44-404 417-701 (705)
102 KOG1274 WD40 repeat protein [G 100.0 4.3E-26 9.3E-31 236.7 34.1 277 43-404 10-297 (933)
103 KOG0305 Anaphase promoting com 100.0 1E-26 2.3E-31 234.7 28.5 272 51-406 182-460 (484)
104 KOG0646 WD40 repeat protein [G 100.0 3.6E-27 7.9E-32 227.2 24.0 291 25-388 18-331 (476)
105 KOG1273 WD40 repeat protein [G 100.0 3.8E-27 8.2E-32 215.6 22.6 279 49-406 26-321 (405)
106 KOG0308 Conserved WD40 repeat- 100.0 1.3E-27 2.9E-32 238.5 20.5 293 51-410 29-330 (735)
107 KOG0647 mRNA export protein (c 100.0 3E-26 6.6E-31 208.9 26.1 274 43-398 24-315 (347)
108 KOG0289 mRNA splicing factor [ 100.0 1.6E-26 3.4E-31 220.3 24.9 281 46-405 219-504 (506)
109 PTZ00421 coronin; Provisional 100.0 1.3E-25 2.8E-30 236.0 33.1 223 1-303 74-313 (493)
110 KOG2106 Uncharacterized conser 100.0 1.5E-25 3.3E-30 217.3 30.5 318 3-406 247-625 (626)
111 KOG0301 Phospholipase A2-activ 99.9 9.6E-26 2.1E-30 227.0 28.4 280 36-407 5-288 (745)
112 KOG0973 Histone transcription 99.9 2.2E-26 4.8E-31 243.9 24.1 248 1-324 68-356 (942)
113 KOG0313 Microtubule binding pr 99.9 3.3E-26 7E-31 214.8 22.4 245 1-322 143-417 (423)
114 KOG1036 Mitotic spindle checkp 99.9 2.8E-25 6.1E-30 203.6 27.1 269 42-396 9-294 (323)
115 KOG0301 Phospholipase A2-activ 99.9 2E-25 4.4E-30 224.7 27.2 273 1-366 13-289 (745)
116 PTZ00420 coronin; Provisional 99.9 1.6E-24 3.4E-29 228.6 35.0 207 200-408 72-294 (568)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.3E-24 7.1E-29 217.5 35.9 268 58-408 1-280 (300)
118 KOG0264 Nucleosome remodeling 99.9 8E-26 1.7E-30 217.7 22.1 248 1-365 123-404 (422)
119 KOG2048 WD40 repeat protein [G 99.9 1E-23 2.2E-28 212.2 38.0 372 2-406 69-547 (691)
120 KOG2096 WD40 repeat protein [G 99.9 3.8E-25 8.2E-30 202.8 25.2 312 27-408 63-403 (420)
121 KOG1063 RNA polymerase II elon 99.9 6.5E-25 1.4E-29 221.0 29.2 377 1-407 266-699 (764)
122 KOG2048 WD40 repeat protein [G 99.9 4.1E-24 8.9E-29 215.0 34.8 328 3-407 26-411 (691)
123 KOG1408 WD40 repeat protein [F 99.9 8.9E-25 1.9E-29 219.9 28.4 334 6-367 328-715 (1080)
124 KOG4328 WD40 protein [Function 99.9 5.6E-25 1.2E-29 211.4 25.5 304 30-408 171-496 (498)
125 KOG0639 Transducin-like enhanc 99.9 1.8E-25 3.9E-30 216.4 21.9 282 1-364 418-703 (705)
126 KOG0646 WD40 repeat protein [G 99.9 1.3E-25 2.8E-30 216.6 20.5 232 2-304 81-330 (476)
127 KOG1274 WD40 repeat protein [G 99.9 1.4E-24 3E-29 225.5 29.7 281 1-361 12-296 (933)
128 KOG2055 WD40 repeat protein [G 99.9 5.6E-25 1.2E-29 211.5 24.6 284 2-365 213-512 (514)
129 KOG0300 WD40 repeat-containing 99.9 2.8E-25 6E-30 203.4 21.4 287 37-408 140-429 (481)
130 KOG1273 WD40 repeat protein [G 99.9 6.8E-25 1.5E-29 200.9 23.2 282 5-365 26-322 (405)
131 KOG1332 Vesicle coat complex C 99.9 1.3E-25 2.8E-30 198.6 17.1 249 39-405 4-284 (299)
132 KOG0650 WD40 repeat nucleolar 99.9 9.5E-25 2.1E-29 216.0 25.0 281 1-362 399-732 (733)
133 KOG4283 Transcription-coupled 99.9 2.4E-24 5.2E-29 195.5 24.6 289 1-364 42-364 (397)
134 KOG4283 Transcription-coupled 99.9 4.3E-24 9.3E-29 193.9 24.9 283 44-406 41-364 (397)
135 KOG0641 WD40 repeat protein [G 99.9 1.8E-23 3.8E-28 182.7 27.7 248 1-323 88-349 (350)
136 KOG1445 Tumor-specific antigen 99.9 2.6E-24 5.6E-29 213.8 24.8 387 1-413 78-756 (1012)
137 KOG1332 Vesicle coat complex C 99.9 9.9E-25 2.1E-29 193.1 19.1 248 1-323 10-286 (299)
138 KOG0299 U3 snoRNP-associated p 99.9 4.8E-24 1E-28 205.3 23.9 267 85-413 135-416 (479)
139 KOG0269 WD40 repeat-containing 99.9 1.5E-24 3.2E-29 221.0 20.6 288 2-367 39-342 (839)
140 KOG0321 WD40 repeat-containing 99.9 6.5E-24 1.4E-28 211.9 23.9 314 8-367 55-393 (720)
141 KOG2445 Nuclear pore complex c 99.9 7E-23 1.5E-27 187.4 26.6 286 39-385 6-341 (361)
142 KOG0650 WD40 repeat nucleolar 99.9 2E-23 4.4E-28 206.7 23.2 321 38-405 393-733 (733)
143 KOG0264 Nucleosome remodeling 99.9 3.5E-23 7.6E-28 199.6 23.7 254 43-407 121-404 (422)
144 KOG4328 WD40 protein [Function 99.9 1.1E-22 2.4E-27 195.7 24.2 291 1-365 185-495 (498)
145 KOG0267 Microtubule severing p 99.9 1.1E-24 2.3E-29 220.4 10.4 233 1-315 27-260 (825)
146 KOG1538 Uncharacterized conser 99.9 6.6E-23 1.4E-27 205.0 22.0 275 4-365 14-293 (1081)
147 KOG0267 Microtubule severing p 99.9 1.7E-24 3.6E-29 218.9 10.6 254 17-357 6-260 (825)
148 KOG4378 Nuclear protein COP1 [ 99.9 2.4E-22 5.3E-27 194.7 23.9 286 24-388 11-305 (673)
149 KOG0283 WD40 repeat-containing 99.9 5.6E-23 1.2E-27 212.9 18.3 214 35-325 359-578 (712)
150 KOG2445 Nuclear pore complex c 99.9 5E-21 1.1E-25 175.4 26.3 290 1-299 12-338 (361)
151 KOG0270 WD40 repeat-containing 99.9 2E-22 4.3E-27 193.4 17.2 234 16-329 193-455 (463)
152 KOG4378 Nuclear protein COP1 [ 99.9 7.1E-22 1.5E-26 191.5 20.9 270 68-415 12-288 (673)
153 KOG2919 Guanine nucleotide-bin 99.9 2.3E-21 5E-26 178.6 23.2 285 48-397 51-361 (406)
154 KOG0307 Vesicle coat complex C 99.9 5.8E-22 1.3E-26 211.5 21.3 285 6-409 10-329 (1049)
155 KOG1009 Chromatin assembly com 99.9 4.9E-21 1.1E-25 181.9 24.9 297 3-369 14-376 (434)
156 COG2319 FOG: WD40 repeat [Gene 99.9 7.1E-19 1.5E-23 187.4 43.0 327 1-411 64-404 (466)
157 KOG0321 WD40 repeat-containing 99.9 2.5E-21 5.5E-26 193.5 21.3 297 1-364 99-444 (720)
158 KOG2919 Guanine nucleotide-bin 99.9 8.1E-21 1.8E-25 175.0 22.2 276 6-356 53-361 (406)
159 KOG0269 WD40 repeat-containing 99.9 1.8E-21 3.9E-26 198.8 19.0 201 206-414 91-303 (839)
160 KOG0270 WD40 repeat-containing 99.9 3.3E-20 7.1E-25 178.3 24.8 240 49-407 176-449 (463)
161 KOG0302 Ribosome Assembly prot 99.9 2.2E-20 4.7E-25 175.7 22.8 199 200-405 209-436 (440)
162 KOG0302 Ribosome Assembly prot 99.9 1.3E-20 2.7E-25 177.3 21.1 244 1-363 150-436 (440)
163 KOG0322 G-protein beta subunit 99.9 1.9E-21 4E-26 174.4 14.3 299 1-364 13-322 (323)
164 COG2319 FOG: WD40 repeat [Gene 99.9 3.1E-18 6.6E-23 182.5 42.2 320 4-408 111-443 (466)
165 KOG1009 Chromatin assembly com 99.9 2.5E-20 5.4E-25 177.2 22.7 293 45-398 12-364 (434)
166 KOG1034 Transcriptional repres 99.9 3.6E-20 7.9E-25 171.2 21.9 293 1-365 37-383 (385)
167 KOG1445 Tumor-specific antigen 99.9 1.1E-19 2.4E-24 181.2 25.7 203 202-405 627-842 (1012)
168 KOG4227 WD40 repeat protein [G 99.9 8.9E-20 1.9E-24 171.9 22.2 291 1-364 55-386 (609)
169 KOG1034 Transcriptional repres 99.9 2.5E-19 5.4E-24 165.7 24.4 292 37-406 29-382 (385)
170 KOG1963 WD40 repeat protein [G 99.9 3.6E-18 7.8E-23 178.1 35.5 328 7-408 165-539 (792)
171 PRK11028 6-phosphogluconolacto 99.9 3.9E-18 8.5E-23 174.7 35.7 274 61-407 5-304 (330)
172 PRK11028 6-phosphogluconolacto 99.8 3.9E-18 8.5E-23 174.7 34.7 296 17-384 4-327 (330)
173 KOG1310 WD40 repeat protein [G 99.8 4.5E-19 9.7E-24 174.3 24.1 230 1-289 49-310 (758)
174 KOG1538 Uncharacterized conser 99.8 3E-19 6.6E-24 179.1 23.0 269 48-405 14-291 (1081)
175 KOG4547 WD40 repeat-containing 99.8 1.2E-18 2.5E-23 174.3 26.9 476 102-655 3-504 (541)
176 KOG0290 Conserved WD40 repeat- 99.8 9.4E-19 2E-23 159.2 22.9 277 4-397 46-357 (364)
177 KOG1188 WD40 repeat protein [G 99.8 3.6E-19 7.9E-24 165.7 20.4 274 16-364 41-345 (376)
178 KOG0642 Cell-cycle nuclear pro 99.8 6.3E-20 1.4E-24 181.6 15.7 266 1-336 293-574 (577)
179 KOG4497 Uncharacterized conser 99.8 4.6E-19 9.9E-24 163.8 19.7 306 8-408 14-392 (447)
180 KOG1517 Guanine nucleotide bin 99.8 1.2E-18 2.6E-23 183.6 25.2 289 5-368 1067-1384(1387)
181 KOG0642 Cell-cycle nuclear pro 99.8 8.1E-20 1.8E-24 180.8 15.5 270 39-374 288-570 (577)
182 KOG1188 WD40 repeat protein [G 99.8 6.3E-19 1.4E-23 164.1 20.0 270 59-406 41-345 (376)
183 KOG4227 WD40 repeat protein [G 99.8 1.5E-18 3.4E-23 163.7 22.3 289 44-406 54-386 (609)
184 KOG1587 Cytoplasmic dynein int 99.8 2.3E-18 4.9E-23 179.8 26.0 285 25-366 222-517 (555)
185 KOG1963 WD40 repeat protein [G 99.8 1.2E-17 2.5E-22 174.3 29.7 373 9-405 23-436 (792)
186 KOG0307 Vesicle coat complex C 99.8 1.8E-19 3.8E-24 192.7 16.4 247 4-326 66-330 (1049)
187 KOG0649 WD40 repeat protein [G 99.8 1.4E-17 2.9E-22 147.9 24.7 286 48-406 12-315 (325)
188 KOG0322 G-protein beta subunit 99.8 1.3E-18 2.8E-23 156.3 17.8 297 37-406 6-322 (323)
189 KOG0644 Uncharacterized conser 99.8 1.2E-19 2.6E-24 186.5 12.5 281 1-370 189-473 (1113)
190 KOG0644 Uncharacterized conser 99.8 1.2E-19 2.6E-24 186.5 10.5 281 38-405 183-466 (1113)
191 KOG1524 WD40 repeat-containing 99.8 1.3E-17 2.7E-22 163.8 22.0 263 1-362 13-283 (737)
192 PF02239 Cytochrom_D1: Cytochr 99.8 2.9E-16 6.4E-21 160.1 31.7 315 18-408 9-348 (369)
193 KOG0649 WD40 repeat protein [G 99.8 3.8E-16 8.2E-21 138.8 27.9 279 5-362 13-313 (325)
194 KOG1007 WD repeat protein TSSC 99.8 2.7E-17 5.8E-22 149.7 21.0 272 23-366 38-362 (370)
195 KOG1334 WD40 repeat protein [G 99.8 2.5E-18 5.4E-23 167.2 14.4 301 1-367 141-468 (559)
196 KOG0303 Actin-binding protein 99.8 1.7E-17 3.6E-22 157.3 19.0 225 1-304 80-320 (472)
197 KOG1334 WD40 repeat protein [G 99.8 2.6E-18 5.6E-23 167.0 13.4 294 38-406 135-465 (559)
198 KOG4497 Uncharacterized conser 99.8 9.2E-17 2E-21 148.7 22.3 335 4-398 50-424 (447)
199 KOG1272 WD40-repeat-containing 99.8 4.9E-19 1.1E-23 171.0 7.5 230 93-405 130-360 (545)
200 KOG2110 Uncharacterized conser 99.8 4.1E-16 8.8E-21 147.2 26.7 174 224-410 68-251 (391)
201 KOG1523 Actin-related protein 99.8 1.3E-16 2.7E-21 147.7 22.3 237 2-305 10-261 (361)
202 PRK01742 tolB translocation pr 99.8 1.9E-16 4.1E-21 167.3 26.7 233 67-387 183-426 (429)
203 KOG0771 Prolactin regulatory e 99.8 2.3E-17 4.9E-22 158.5 16.4 200 6-282 148-354 (398)
204 KOG0771 Prolactin regulatory e 99.7 5.5E-16 1.2E-20 149.1 25.0 192 206-407 148-354 (398)
205 KOG2110 Uncharacterized conser 99.7 2.3E-15 4.9E-20 142.2 27.9 311 3-408 6-331 (391)
206 PRK01742 tolB translocation pr 99.7 1.5E-16 3.2E-21 168.1 22.5 235 24-346 183-426 (429)
207 KOG1240 Protein kinase contain 99.7 8.7E-16 1.9E-20 165.0 27.8 269 30-366 1034-1335(1431)
208 KOG1007 WD repeat protein TSSC 99.7 8.2E-16 1.8E-20 140.1 23.4 277 66-407 38-361 (370)
209 KOG1587 Cytoplasmic dynein int 99.7 7E-16 1.5E-20 161.3 26.5 274 68-410 222-519 (555)
210 KOG0303 Actin-binding protein 99.7 4.8E-16 1E-20 147.5 21.8 209 196-405 75-292 (472)
211 KOG1240 Protein kinase contain 99.7 1.1E-15 2.3E-20 164.3 25.3 289 1-363 1047-1431(1431)
212 KOG1517 Guanine nucleotide bin 99.7 1.7E-15 3.6E-20 160.3 25.0 290 46-406 1064-1380(1387)
213 KOG2321 WD40 repeat protein [G 99.7 2.4E-15 5.3E-20 149.3 24.5 288 1-367 50-345 (703)
214 PF02239 Cytochrom_D1: Cytochr 99.7 3.9E-15 8.4E-20 151.9 27.0 291 7-375 41-357 (369)
215 KOG2321 WD40 repeat protein [G 99.7 4.5E-15 9.7E-20 147.5 24.4 275 44-404 49-340 (703)
216 KOG2139 WD40 repeat protein [G 99.7 1.3E-14 2.7E-19 136.6 26.0 302 4-405 100-429 (445)
217 KOG2111 Uncharacterized conser 99.7 5.7E-14 1.2E-18 130.3 28.8 239 4-325 7-258 (346)
218 PRK04922 tolB translocation pr 99.7 2.4E-14 5.2E-19 151.6 30.2 233 68-386 184-432 (433)
219 KOG1524 WD40 repeat-containing 99.7 2.7E-15 5.8E-20 147.7 20.5 182 200-404 102-284 (737)
220 KOG1523 Actin-related protein 99.7 5.2E-15 1.1E-19 137.1 20.2 244 45-405 9-278 (361)
221 KOG1272 WD40-repeat-containing 99.7 4E-16 8.6E-21 151.1 13.2 264 6-357 133-401 (545)
222 PRK03629 tolB translocation pr 99.7 3.1E-14 6.7E-19 150.1 28.0 233 26-345 180-427 (429)
223 KOG2139 WD40 repeat protein [G 99.7 3.8E-14 8.3E-19 133.3 24.7 262 2-365 140-431 (445)
224 KOG0290 Conserved WD40 repeat- 99.7 7.7E-15 1.7E-19 134.0 19.3 239 1-314 95-357 (364)
225 KOG2315 Predicted translation 99.7 1.9E-13 4.1E-18 136.2 30.6 315 4-406 36-389 (566)
226 PRK03629 tolB translocation pr 99.7 4E-14 8.7E-19 149.2 27.9 232 69-386 180-427 (429)
227 PF10282 Lactonase: Lactonase, 99.7 1.8E-12 3.9E-17 132.9 39.1 285 18-406 2-321 (345)
228 PRK02889 tolB translocation pr 99.7 1.8E-13 4E-18 144.4 32.7 219 88-387 191-425 (427)
229 KOG1354 Serine/threonine prote 99.7 1.9E-14 4.1E-19 134.5 21.1 327 3-405 26-432 (433)
230 KOG3881 Uncharacterized conser 99.6 1.8E-14 4E-19 137.1 20.7 273 3-387 56-342 (412)
231 KOG2394 WD40 protein DMR-N9 [G 99.6 1.3E-14 2.9E-19 143.1 19.3 231 49-344 126-383 (636)
232 KOG2394 WD40 protein DMR-N9 [G 99.6 1.2E-14 2.5E-19 143.5 18.6 211 172-386 138-384 (636)
233 PRK05137 tolB translocation pr 99.6 1E-13 2.2E-18 147.1 27.2 232 69-386 183-432 (435)
234 PRK04922 tolB translocation pr 99.6 9.4E-14 2E-18 147.2 26.5 234 25-345 184-432 (433)
235 KOG2111 Uncharacterized conser 99.6 1.9E-13 4E-18 126.9 24.3 172 224-408 75-257 (346)
236 COG5354 Uncharacterized protei 99.6 3.5E-13 7.5E-18 132.7 27.5 316 4-407 34-395 (561)
237 PRK02889 tolB translocation pr 99.6 2.1E-13 4.5E-18 144.0 25.8 236 25-346 176-425 (427)
238 COG2706 3-carboxymuconate cycl 99.6 7.1E-12 1.5E-16 119.4 33.2 271 67-409 15-323 (346)
239 KOG2314 Translation initiation 99.6 5.3E-13 1.2E-17 132.4 26.4 314 6-407 214-573 (698)
240 PRK05137 tolB translocation pr 99.6 3.7E-13 8.1E-18 142.8 27.6 233 25-345 182-432 (435)
241 KOG1310 WD40 repeat protein [G 99.6 7.8E-15 1.7E-19 144.8 12.9 225 38-374 43-312 (758)
242 COG4946 Uncharacterized protei 99.6 9.1E-11 2E-15 114.6 38.8 213 173-396 282-508 (668)
243 PF08662 eIF2A: Eukaryotic tra 99.6 3.3E-13 7.2E-18 125.1 20.1 147 256-406 9-178 (194)
244 PF08662 eIF2A: Eukaryotic tra 99.6 6.2E-13 1.4E-17 123.3 20.9 158 205-374 8-187 (194)
245 KOG3881 Uncharacterized conser 99.6 2.6E-13 5.6E-18 129.3 18.5 212 17-304 117-342 (412)
246 COG2706 3-carboxymuconate cycl 99.6 6.3E-11 1.4E-15 113.0 34.3 302 24-385 15-345 (346)
247 KOG1409 Uncharacterized conser 99.5 6.1E-13 1.3E-17 124.6 19.9 329 3-366 25-395 (404)
248 TIGR02800 propeller_TolB tol-p 99.5 4.8E-12 1E-16 134.5 28.6 204 89-373 186-404 (417)
249 TIGR02658 TTQ_MADH_Hv methylam 99.5 2E-10 4.4E-15 114.4 36.6 266 25-373 27-338 (352)
250 KOG2315 Predicted translation 99.5 7.4E-12 1.6E-16 125.1 22.8 308 4-386 75-410 (566)
251 KOG2041 WD40 repeat protein [G 99.5 7.8E-12 1.7E-16 127.5 23.3 288 44-410 12-340 (1189)
252 KOG1354 Serine/threonine prote 99.5 1.5E-11 3.3E-16 115.3 23.0 275 45-407 24-359 (433)
253 TIGR02800 propeller_TolB tol-p 99.5 1.6E-11 3.5E-16 130.5 26.6 187 202-399 189-387 (417)
254 COG5354 Uncharacterized protei 99.5 5.4E-11 1.2E-15 117.5 27.6 301 4-398 73-421 (561)
255 PRK04792 tolB translocation pr 99.5 2.1E-11 4.6E-16 129.1 26.7 169 206-386 265-446 (448)
256 PRK00178 tolB translocation pr 99.5 2.3E-11 4.9E-16 129.5 26.9 217 89-386 195-427 (430)
257 PF10282 Lactonase: Lactonase, 99.5 6E-10 1.3E-14 114.3 35.9 271 5-343 39-345 (345)
258 PRK00178 tolB translocation pr 99.5 3.1E-11 6.8E-16 128.4 27.4 233 26-345 180-427 (430)
259 TIGR02658 TTQ_MADH_Hv methylam 99.4 8.1E-10 1.8E-14 110.2 34.3 261 68-407 27-330 (352)
260 PRK04792 tolB translocation pr 99.4 3E-11 6.5E-16 128.0 25.4 233 26-345 199-446 (448)
261 TIGR03300 assembly_YfgL outer 99.4 2.9E-10 6.3E-15 118.8 32.0 301 17-404 67-376 (377)
262 KOG0974 WD-repeat protein WDR6 99.4 6.5E-11 1.4E-15 126.7 26.4 107 10-123 141-247 (967)
263 COG4946 Uncharacterized protei 99.4 7.5E-10 1.6E-14 108.4 30.9 375 14-405 50-475 (668)
264 PRK01029 tolB translocation pr 99.4 1.6E-10 3.4E-15 121.5 28.8 242 25-347 165-426 (428)
265 PRK01029 tolB translocation pr 99.4 1.5E-10 3.3E-15 121.6 28.6 176 205-388 233-426 (428)
266 KOG1409 Uncharacterized conser 99.4 1.8E-11 3.9E-16 114.9 18.2 254 81-408 13-271 (404)
267 KOG0974 WD-repeat protein WDR6 99.4 8.9E-12 1.9E-16 133.1 18.1 273 3-366 8-289 (967)
268 KOG4547 WD40 repeat-containing 99.4 3.1E-11 6.7E-16 121.7 20.2 188 212-406 3-219 (541)
269 KOG2041 WD40 repeat protein [G 99.4 6.2E-11 1.3E-15 121.1 21.3 277 3-353 15-326 (1189)
270 KOG1912 WD40 repeat protein [G 99.4 2.6E-11 5.7E-16 125.1 18.7 394 1-407 54-551 (1062)
271 PF04003 Utp12: Dip2/Utp12 Fam 99.3 4.2E-12 9.1E-17 106.2 9.2 105 563-682 1-108 (110)
272 PF04762 IKI3: IKI3 family; I 99.3 1.5E-08 3.2E-13 115.1 39.5 359 4-405 23-454 (928)
273 KOG1832 HIV-1 Vpr-binding prot 99.3 2.2E-12 4.7E-17 134.5 7.8 270 37-398 1093-1381(1516)
274 PF04762 IKI3: IKI3 family; I 99.3 5.5E-08 1.2E-12 110.5 42.4 370 3-406 76-563 (928)
275 KOG1912 WD40 repeat protein [G 99.3 1.5E-09 3.3E-14 112.4 26.5 119 4-130 17-151 (1062)
276 KOG0280 Uncharacterized conser 99.3 7.9E-10 1.7E-14 102.0 20.2 278 17-368 26-336 (339)
277 KOG0309 Conserved WD40 repeat- 99.3 4.9E-11 1.1E-15 122.3 13.0 287 2-366 24-340 (1081)
278 KOG4190 Uncharacterized conser 99.2 4.9E-11 1.1E-15 118.4 12.0 288 43-403 732-1032(1034)
279 KOG1064 RAVE (regulator of V-A 99.2 6.7E-11 1.4E-15 132.4 13.9 197 4-293 2210-2409(2439)
280 KOG2314 Translation initiation 99.2 2.9E-09 6.3E-14 106.3 23.8 271 4-357 251-559 (698)
281 PLN02919 haloacid dehalogenase 99.2 1.1E-08 2.4E-13 118.5 32.7 264 50-370 571-893 (1057)
282 PLN02919 haloacid dehalogenase 99.2 2.7E-08 5.8E-13 115.3 33.6 261 7-327 572-892 (1057)
283 KOG1064 RAVE (regulator of V-A 99.1 2.1E-10 4.5E-15 128.6 11.8 237 59-391 2181-2423(2439)
284 TIGR03300 assembly_YfgL outer 99.1 2E-08 4.2E-13 105.1 26.1 261 17-362 107-376 (377)
285 PRK04043 tolB translocation pr 99.1 1.3E-08 2.8E-13 106.2 24.4 189 204-405 189-396 (419)
286 KOG0280 Uncharacterized conser 99.1 1.1E-08 2.5E-13 94.5 20.6 193 205-405 124-331 (339)
287 PRK11138 outer membrane biogen 99.1 1.1E-07 2.3E-12 100.0 30.9 305 17-405 71-392 (394)
288 KOG0882 Cyclophilin-related pe 99.1 1.3E-09 2.8E-14 106.1 14.2 254 44-374 7-314 (558)
289 COG5170 CDC55 Serine/threonine 99.1 3.6E-09 7.8E-14 98.2 16.1 332 3-405 27-458 (460)
290 PRK04043 tolB translocation pr 99.1 8.4E-08 1.8E-12 100.2 28.0 151 203-366 233-401 (419)
291 KOG4190 Uncharacterized conser 99.1 6E-10 1.3E-14 110.8 10.3 279 1-361 734-1032(1034)
292 PF08450 SGL: SMP-30/Gluconola 99.1 6.8E-07 1.5E-11 87.3 31.0 184 205-395 42-244 (246)
293 KOG4532 WD40-like repeat conta 99.0 7.8E-08 1.7E-12 87.8 21.7 258 23-367 50-333 (344)
294 KOG3914 WD repeat protein WDR4 99.0 1.1E-08 2.3E-13 98.9 15.9 167 49-293 65-234 (390)
295 KOG3914 WD repeat protein WDR4 99.0 2.9E-09 6.3E-14 102.8 11.7 166 205-376 65-234 (390)
296 PF15492 Nbas_N: Neuroblastoma 99.0 2.8E-07 6E-12 85.9 24.0 242 52-375 3-269 (282)
297 KOG4532 WD40-like repeat conta 99.0 1.9E-07 4E-12 85.4 20.6 222 17-312 86-321 (344)
298 KOG4714 Nucleoporin [Nuclear s 98.9 6.8E-08 1.5E-12 87.9 15.8 256 5-363 39-316 (319)
299 COG5170 CDC55 Serine/threonine 98.9 4.7E-08 1E-12 91.0 14.0 293 45-365 25-367 (460)
300 KOG3617 WD40 and TPR repeat-co 98.9 1.2E-07 2.5E-12 99.6 18.4 109 7-123 20-132 (1416)
301 PF13360 PQQ_2: PQQ-like domai 98.9 1.2E-06 2.7E-11 85.1 25.1 231 24-329 2-236 (238)
302 PF08450 SGL: SMP-30/Gluconola 98.8 5.1E-06 1.1E-10 81.1 28.6 220 51-353 4-243 (246)
303 PRK02888 nitrous-oxide reducta 98.8 8.5E-07 1.8E-11 93.2 24.0 123 273-396 295-451 (635)
304 PF15492 Nbas_N: Neuroblastoma 98.8 5.8E-06 1.3E-10 77.2 26.3 245 7-335 2-271 (282)
305 KOG0882 Cyclophilin-related pe 98.8 1.3E-07 2.9E-12 92.5 16.0 257 1-332 8-314 (558)
306 PRK11138 outer membrane biogen 98.8 2.3E-06 5E-11 89.9 26.4 262 17-364 122-393 (394)
307 PF13360 PQQ_2: PQQ-like domai 98.8 3.7E-06 8E-11 81.8 26.0 150 213-371 75-236 (238)
308 PF06433 Me-amine-dh_H: Methyl 98.8 5.1E-06 1.1E-10 81.1 25.8 270 25-375 17-330 (342)
309 PF00930 DPPIV_N: Dipeptidyl p 98.8 6.2E-06 1.3E-10 85.0 28.1 302 11-397 1-348 (353)
310 KOG2066 Vacuolar assembly/sort 98.8 3.8E-07 8.3E-12 95.8 18.6 179 203-407 40-233 (846)
311 PF07433 DUF1513: Protein of u 98.8 1.1E-05 2.3E-10 78.0 27.0 250 4-359 6-279 (305)
312 KOG2695 WD40 repeat protein [G 98.8 3.3E-08 7.2E-13 93.4 9.0 149 220-378 230-389 (425)
313 KOG1645 RING-finger-containing 98.7 4.8E-07 1E-11 87.5 16.6 245 85-407 186-461 (463)
314 cd00216 PQQ_DH Dehydrogenases 98.7 2.9E-05 6.3E-10 83.6 31.8 320 17-398 63-458 (488)
315 PF00400 WD40: WD domain, G-be 98.7 6.5E-08 1.4E-12 63.7 6.6 39 325-363 1-39 (39)
316 KOG4714 Nucleoporin [Nuclear s 98.7 2.1E-07 4.5E-12 84.8 11.2 190 207-405 94-316 (319)
317 KOG2695 WD40 repeat protein [G 98.6 9.3E-08 2E-12 90.5 8.2 129 202-334 252-387 (425)
318 PF07433 DUF1513: Protein of u 98.6 1.9E-05 4.2E-10 76.2 24.1 197 202-406 4-246 (305)
319 KOG1275 PAB-dependent poly(A) 98.6 4.9E-07 1.1E-11 96.1 13.6 143 211-363 184-340 (1118)
320 KOG1920 IkappaB kinase complex 98.6 6.7E-05 1.5E-09 83.1 30.1 278 3-364 69-364 (1265)
321 PF08596 Lgl_C: Lethal giant l 98.6 2E-05 4.3E-10 81.1 25.1 283 94-405 3-333 (395)
322 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00043 9.4E-09 63.7 30.2 114 10-130 18-131 (354)
323 KOG1832 HIV-1 Vpr-binding prot 98.6 7.9E-08 1.7E-12 101.3 6.8 218 1-311 1100-1319(1516)
324 KOG0309 Conserved WD40 repeat- 98.6 2.9E-07 6.3E-12 95.4 9.8 121 1-125 113-235 (1081)
325 PF00400 WD40: WD domain, G-be 98.5 2.8E-07 6.1E-12 60.6 6.3 39 35-74 1-39 (39)
326 KOG2114 Vacuolar assembly/sort 98.5 1.7E-05 3.6E-10 84.5 22.3 222 53-339 30-260 (933)
327 KOG1645 RING-finger-containing 98.5 3.5E-06 7.6E-11 81.7 15.8 93 27-125 175-269 (463)
328 KOG2114 Vacuolar assembly/sort 98.5 2.6E-05 5.7E-10 83.1 23.5 207 10-291 31-252 (933)
329 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00012 2.7E-09 67.2 24.6 62 14-78 63-125 (354)
330 PRK02888 nitrous-oxide reducta 98.5 3E-05 6.5E-10 81.9 22.9 195 212-408 139-405 (635)
331 KOG2066 Vacuolar assembly/sort 98.4 9.8E-06 2.1E-10 85.6 16.9 183 46-323 39-233 (846)
332 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.00093 2E-08 72.3 32.8 319 17-379 71-504 (527)
333 KOG1920 IkappaB kinase complex 98.4 2.5E-05 5.5E-10 86.3 20.2 192 202-405 68-320 (1265)
334 PF14583 Pectate_lyase22: Olig 98.4 0.00072 1.6E-08 67.6 28.6 297 9-364 42-380 (386)
335 COG3391 Uncharacterized conser 98.4 0.001 2.3E-08 69.1 31.4 279 27-389 13-311 (381)
336 KOG3617 WD40 and TPR repeat-co 98.3 7E-06 1.5E-10 86.7 13.5 72 5-78 62-133 (1416)
337 PF11768 DUF3312: Protein of u 98.3 0.0011 2.3E-08 68.7 28.6 94 277-372 239-336 (545)
338 PF06433 Me-amine-dh_H: Methyl 98.3 0.00026 5.6E-09 69.4 23.1 256 7-333 40-330 (342)
339 KOG3621 WD40 repeat-containing 98.3 0.00016 3.4E-09 75.8 22.5 117 5-123 36-155 (726)
340 PF04053 Coatomer_WDAD: Coatom 98.3 0.00017 3.6E-09 75.4 23.2 179 205-405 71-260 (443)
341 KOG1897 Damage-specific DNA bi 98.3 0.0072 1.6E-07 66.2 35.2 364 2-398 530-934 (1096)
342 PF06977 SdiA-regulated: SdiA- 98.3 0.0012 2.5E-08 63.2 26.2 213 4-279 23-247 (248)
343 PF14583 Pectate_lyase22: Olig 98.3 0.0023 5E-08 64.1 28.8 314 31-405 16-379 (386)
344 PF11768 DUF3312: Protein of u 98.3 0.0014 3E-08 68.0 27.7 75 250-325 257-331 (545)
345 KOG3621 WD40 repeat-containing 98.3 0.00026 5.5E-09 74.2 22.6 125 44-233 31-155 (726)
346 KOG1275 PAB-dependent poly(A) 98.2 2.7E-05 5.8E-10 83.4 15.1 179 17-280 149-340 (1118)
347 COG0823 TolB Periplasmic compo 98.2 0.00025 5.5E-09 73.8 21.9 142 205-356 240-390 (425)
348 COG0823 TolB Periplasmic compo 98.2 4.5E-05 9.7E-10 79.3 15.9 187 202-398 192-391 (425)
349 PF04053 Coatomer_WDAD: Coatom 98.2 4.8E-05 1E-09 79.4 16.0 177 203-405 33-221 (443)
350 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0011 2.5E-08 68.3 26.0 271 3-353 43-345 (353)
351 PF00780 CNH: CNH domain; Int 98.2 0.0032 6.9E-08 62.6 28.6 243 13-335 6-267 (275)
352 PF08596 Lgl_C: Lethal giant l 98.1 0.00026 5.6E-09 73.0 20.1 275 4-354 3-325 (395)
353 KOG1897 Damage-specific DNA bi 98.1 0.015 3.2E-07 63.9 33.4 362 4-405 489-896 (1096)
354 cd00216 PQQ_DH Dehydrogenases 98.1 0.0024 5.1E-08 68.9 27.7 105 216-333 303-434 (488)
355 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0051 1.1E-07 64.4 29.2 129 259-407 185-314 (410)
356 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0089 1.9E-07 62.6 30.8 136 209-373 185-322 (410)
357 PF03178 CPSF_A: CPSF A subuni 98.1 0.00079 1.7E-08 68.6 22.7 184 214-404 42-262 (321)
358 PF05694 SBP56: 56kDa selenium 98.1 0.0063 1.4E-07 61.5 27.7 123 273-395 221-392 (461)
359 COG3391 Uncharacterized conser 98.1 0.0068 1.5E-07 63.0 29.7 196 203-407 74-283 (381)
360 KOG1008 Uncharacterized conser 98.1 1.9E-06 4.2E-11 88.3 2.9 205 4-282 58-275 (783)
361 PF02897 Peptidase_S9_N: Proly 98.0 0.0056 1.2E-07 64.9 28.7 114 5-123 126-261 (414)
362 PF06977 SdiA-regulated: SdiA- 98.0 0.0056 1.2E-07 58.6 25.3 159 202-362 64-247 (248)
363 PF00780 CNH: CNH domain; Int 97.9 0.008 1.7E-07 59.7 25.9 242 56-377 5-267 (275)
364 COG3386 Gluconolactonase [Carb 97.9 0.0065 1.4E-07 60.4 24.4 236 9-312 31-274 (307)
365 KOG1008 Uncharacterized conser 97.9 3.2E-06 6.9E-11 86.8 1.1 198 202-409 56-277 (783)
366 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.015 3.3E-07 63.0 28.8 106 223-328 180-338 (527)
367 PF03178 CPSF_A: CPSF A subuni 97.8 0.0028 6E-08 64.5 21.4 217 25-320 2-262 (321)
368 COG3386 Gluconolactonase [Carb 97.8 0.0096 2.1E-07 59.2 22.6 144 253-398 111-277 (307)
369 KOG4640 Anaphase-promoting com 97.7 0.00016 3.5E-09 74.8 9.1 94 292-386 19-115 (665)
370 PF08553 VID27: VID27 cytoplas 97.7 0.0048 1E-07 68.2 20.4 132 272-406 502-646 (794)
371 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0051 1.1E-07 49.7 14.5 101 5-117 2-109 (111)
372 COG3490 Uncharacterized protei 97.6 0.024 5.1E-07 53.5 20.4 260 7-321 72-346 (366)
373 PF02897 Peptidase_S9_N: Proly 97.6 0.16 3.6E-06 53.7 30.4 181 207-394 174-388 (414)
374 PF07995 GSDH: Glucose / Sorbo 97.5 0.14 3.1E-06 52.1 28.1 75 286-360 245-330 (331)
375 smart00320 WD40 WD40 repeats. 97.5 0.00039 8.4E-09 44.6 5.9 39 325-363 2-40 (40)
376 KOG2079 Vacuolar assembly/sort 97.4 0.003 6.5E-08 69.6 14.6 102 17-124 101-205 (1206)
377 PF15390 DUF4613: Domain of un 97.4 0.13 2.8E-06 53.8 25.4 110 4-122 21-142 (671)
378 PRK13616 lipoprotein LpqB; Pro 97.3 0.01 2.2E-07 64.7 17.4 144 253-405 350-523 (591)
379 PRK13616 lipoprotein LpqB; Pro 97.3 0.015 3.2E-07 63.6 18.5 178 203-397 350-559 (591)
380 KOG4640 Anaphase-promoting com 97.3 0.0011 2.5E-08 68.7 9.3 93 4-102 22-115 (665)
381 PF05096 Glu_cyclase_2: Glutam 97.3 0.18 4E-06 48.1 23.7 128 215-354 101-249 (264)
382 PF08553 VID27: VID27 cytoplas 97.3 0.0047 1E-07 68.3 14.2 141 215-364 494-646 (794)
383 smart00320 WD40 WD40 repeats. 97.2 0.00097 2.1E-08 42.6 5.4 39 35-74 2-40 (40)
384 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.09 2E-06 54.3 21.9 80 253-332 308-407 (415)
385 PF09384 UTP15_C: UTP15 C term 97.2 0.0031 6.8E-08 55.2 9.8 75 604-679 73-147 (148)
386 KOG1898 Splicing factor 3b, su 97.1 0.3 6.5E-06 54.6 25.6 79 2-80 582-675 (1205)
387 PF05096 Glu_cyclase_2: Glutam 97.1 0.29 6.3E-06 46.8 23.0 183 204-397 46-251 (264)
388 KOG4499 Ca2+-binding protein R 97.1 0.15 3.2E-06 46.9 19.3 144 252-396 108-274 (310)
389 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.073 1.6E-06 43.2 15.4 100 255-360 2-109 (111)
390 KOG2395 Protein involved in va 97.0 0.03 6.4E-07 57.4 16.1 135 267-405 349-498 (644)
391 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.36 7.9E-06 49.9 24.3 83 294-376 308-409 (415)
392 COG3204 Uncharacterized protei 97.0 0.13 2.7E-06 49.3 19.0 119 3-122 86-210 (316)
393 TIGR03074 PQQ_membr_DH membran 97.0 0.18 3.8E-06 56.9 23.7 164 212-375 258-487 (764)
394 COG3204 Uncharacterized protei 97.0 0.26 5.6E-06 47.2 20.5 175 89-331 82-270 (316)
395 PHA02713 hypothetical protein; 96.9 0.086 1.9E-06 57.8 20.2 147 213-369 351-537 (557)
396 KOG4441 Proteins containing BT 96.9 0.12 2.5E-06 56.7 20.8 96 17-115 287-392 (571)
397 KOG2444 WD40 repeat protein [G 96.9 0.0027 5.9E-08 57.9 6.8 103 264-366 70-178 (238)
398 PHA02713 hypothetical protein; 96.9 0.11 2.5E-06 56.9 20.7 101 225-334 433-544 (557)
399 PRK10115 protease 2; Provision 96.9 1.2 2.5E-05 50.3 32.5 58 5-66 129-191 (686)
400 KOG2079 Vacuolar assembly/sort 96.8 0.0044 9.4E-08 68.5 9.0 100 263-364 98-202 (1206)
401 PF14727 PHTB1_N: PTHB1 N-term 96.7 0.91 2E-05 47.2 28.8 112 12-124 34-165 (418)
402 KOG2444 WD40 repeat protein [G 96.7 0.0024 5.3E-08 58.2 4.7 111 162-282 64-177 (238)
403 TIGR02604 Piru_Ver_Nterm putat 96.6 0.92 2E-05 47.0 24.0 66 47-114 14-91 (367)
404 PF10647 Gmad1: Lipoprotein Lp 96.6 0.62 1.4E-05 45.3 21.3 117 4-123 25-145 (253)
405 PF05694 SBP56: 56kDa selenium 96.6 0.53 1.2E-05 48.1 20.6 200 213-412 86-347 (461)
406 PF10647 Gmad1: Lipoprotein Lp 96.5 0.32 6.9E-06 47.4 19.0 147 254-402 25-191 (253)
407 PF08625 Utp13: Utp13 specific 96.5 0.015 3.2E-07 50.2 8.5 113 552-680 13-136 (141)
408 COG3490 Uncharacterized protei 96.5 0.36 7.8E-06 45.9 17.7 140 256-395 71-244 (366)
409 KOG4441 Proteins containing BT 96.5 0.36 7.9E-06 52.9 20.8 143 213-367 380-548 (571)
410 PF12234 Rav1p_C: RAVE protein 96.4 0.12 2.6E-06 55.9 16.2 111 294-407 30-156 (631)
411 KOG4499 Ca2+-binding protein R 96.4 0.64 1.4E-05 42.9 18.1 91 255-345 160-263 (310)
412 TIGR03074 PQQ_membr_DH membran 96.3 1.2 2.7E-05 50.3 23.8 192 214-407 194-477 (764)
413 PF12894 Apc4_WD40: Anaphase-p 96.2 0.014 3E-07 39.4 5.2 31 2-33 11-41 (47)
414 PF07995 GSDH: Glucose / Sorbo 96.2 1.4 3E-05 44.9 22.2 68 334-402 251-330 (331)
415 PF15390 DUF4613: Domain of un 96.2 2.1 4.6E-05 45.3 24.6 114 4-121 58-185 (671)
416 COG5276 Uncharacterized conser 96.1 1.4 3.1E-05 42.3 27.2 274 6-364 90-368 (370)
417 KOG2395 Protein involved in va 96.1 0.094 2E-06 53.9 12.5 104 13-121 344-458 (644)
418 TIGR02604 Piru_Ver_Nterm putat 96.1 0.27 5.8E-06 51.0 16.6 142 253-397 14-204 (367)
419 TIGR03118 PEPCTERM_chp_1 conse 96.1 1.5 3.3E-05 42.5 23.9 165 217-386 103-307 (336)
420 PF12894 Apc4_WD40: Anaphase-p 96.1 0.022 4.8E-07 38.4 5.5 35 334-369 10-44 (47)
421 PRK13684 Ycf48-like protein; P 96.0 2.2 4.8E-05 43.4 29.0 150 202-363 172-329 (334)
422 KOG3630 Nuclear pore complex, 95.7 0.062 1.3E-06 60.1 9.8 151 202-353 100-261 (1405)
423 KOG2280 Vacuolar assembly/sort 95.6 1.2 2.7E-05 48.2 18.8 53 293-346 216-270 (829)
424 PHA03098 kelch-like protein; P 95.5 0.59 1.3E-05 51.4 17.6 146 213-368 342-514 (534)
425 KOG3630 Nuclear pore complex, 95.5 0.13 2.8E-06 57.7 11.8 187 207-395 46-262 (1405)
426 COG3823 Glutamine cyclotransfe 95.5 1.4 3.1E-05 40.0 15.9 123 219-353 106-247 (262)
427 PF14727 PHTB1_N: PTHB1 N-term 95.5 3.9 8.4E-05 42.6 31.7 175 215-404 146-357 (418)
428 PF14870 PSII_BNR: Photosynthe 95.4 3.2 6.9E-05 41.2 32.8 145 250-398 142-296 (302)
429 PHA03098 kelch-like protein; P 95.4 0.49 1.1E-05 52.0 16.2 149 211-369 292-468 (534)
430 PF12234 Rav1p_C: RAVE protein 95.4 0.39 8.3E-06 52.2 14.5 105 258-364 35-155 (631)
431 PF08728 CRT10: CRT10; InterP 95.4 0.84 1.8E-05 50.2 17.0 150 214-364 49-245 (717)
432 KOG2280 Vacuolar assembly/sort 95.3 1.8 3.9E-05 47.0 18.6 39 202-240 216-254 (829)
433 KOG2377 Uncharacterized conser 95.3 3.3 7.1E-05 42.3 19.3 74 50-125 26-99 (657)
434 COG4257 Vgb Streptogramin lyas 95.2 3 6.6E-05 39.7 22.5 239 6-325 65-307 (353)
435 KOG1916 Nuclear protein, conta 95.1 0.014 3.1E-07 63.2 2.9 153 250-406 130-322 (1283)
436 PRK10115 protease 2; Provision 95.1 7.7 0.00017 43.9 26.8 191 203-406 127-343 (686)
437 PF14870 PSII_BNR: Photosynthe 94.9 4.4 9.6E-05 40.2 28.8 149 202-362 144-301 (302)
438 PF03022 MRJP: Major royal jel 94.9 4.4 9.6E-05 40.2 19.8 137 275-413 35-221 (287)
439 PF10433 MMS1_N: Mono-function 94.7 7.7 0.00017 42.3 22.8 266 55-345 219-503 (504)
440 PHA02790 Kelch-like protein; P 94.7 1.6 3.4E-05 47.2 17.1 59 17-76 274-339 (480)
441 TIGR03118 PEPCTERM_chp_1 conse 94.7 4.7 0.0001 39.3 22.9 235 48-345 24-307 (336)
442 PF10168 Nup88: Nuclear pore c 94.6 9.8 0.00021 42.9 23.5 29 92-121 84-112 (717)
443 PRK13684 Ycf48-like protein; P 94.5 6.3 0.00014 40.2 30.4 147 252-405 172-329 (334)
444 COG5290 IkappaB kinase complex 94.4 6.1 0.00013 43.3 19.7 92 253-345 247-346 (1243)
445 KOG2377 Uncharacterized conser 94.3 7.2 0.00016 40.0 20.7 121 200-326 64-188 (657)
446 PF14761 HPS3_N: Hermansky-Pud 94.1 3.8 8.3E-05 37.8 15.5 137 215-364 29-213 (215)
447 PF13449 Phytase-like: Esteras 94.0 4 8.6E-05 41.5 17.4 143 251-394 18-232 (326)
448 PF02333 Phytase: Phytase; In 93.9 8.4 0.00018 39.4 20.9 121 253-373 156-299 (381)
449 COG4257 Vgb Streptogramin lyas 93.9 6.2 0.00013 37.7 17.9 191 202-405 61-260 (353)
450 PHA02790 Kelch-like protein; P 93.8 3.2 6.9E-05 44.8 17.2 143 212-367 317-472 (480)
451 PF14761 HPS3_N: Hermansky-Pud 93.7 2.7 5.9E-05 38.8 13.8 103 306-411 29-167 (215)
452 COG5167 VID27 Protein involved 93.3 4.5 9.9E-05 41.9 15.8 146 262-411 477-636 (776)
453 PF10395 Utp8: Utp8 family; I 93.3 15 0.00033 40.3 22.7 150 251-406 128-304 (670)
454 PF14781 BBS2_N: Ciliary BBSom 93.3 4.6 9.9E-05 34.2 13.3 121 209-331 5-133 (136)
455 PF10168 Nup88: Nuclear pore c 93.3 2.9 6.3E-05 47.0 16.0 29 200-228 82-110 (717)
456 PF13449 Phytase-like: Esteras 93.2 11 0.00023 38.4 21.8 163 202-365 19-249 (326)
457 PF10313 DUF2415: Uncharacteri 93.1 0.42 9.2E-06 31.3 5.5 32 3-34 1-34 (43)
458 KOG3616 Selective LIM binding 92.7 4.2 9E-05 44.1 15.2 66 4-74 16-81 (1636)
459 PF07569 Hira: TUP1-like enhan 92.2 0.77 1.7E-05 43.4 8.5 63 343-407 18-95 (219)
460 PF07569 Hira: TUP1-like enhan 92.0 0.94 2E-05 42.8 8.9 74 208-282 16-95 (219)
461 smart00036 CNH Domain found in 91.9 15 0.00033 36.8 30.7 63 11-78 10-75 (302)
462 COG5276 Uncharacterized conser 91.8 13 0.00028 36.0 28.2 275 46-405 86-367 (370)
463 KOG1916 Nuclear protein, conta 91.7 0.26 5.7E-06 54.0 5.1 179 177-364 152-373 (1283)
464 TIGR03606 non_repeat_PQQ dehyd 91.5 21 0.00046 37.7 30.0 64 296-360 351-430 (454)
465 COG4590 ABC-type uncharacteriz 91.1 1.6 3.4E-05 44.4 9.5 158 250-410 218-389 (733)
466 PLN00033 photosystem II stabil 91.1 22 0.00047 37.1 32.2 146 253-404 239-396 (398)
467 TIGR02276 beta_rpt_yvtn 40-res 90.9 1.1 2.3E-05 29.3 5.9 41 345-385 1-42 (42)
468 COG3292 Predicted periplasmic 90.9 25 0.00054 37.5 19.4 110 294-409 376-493 (671)
469 COG5167 VID27 Protein involved 90.9 2.9 6.3E-05 43.3 11.2 142 212-365 477-632 (776)
470 TIGR03606 non_repeat_PQQ dehyd 90.8 25 0.00053 37.3 18.7 102 253-356 30-166 (454)
471 KOG1900 Nuclear pore complex, 90.7 41 0.00089 39.7 21.3 77 46-125 178-275 (1311)
472 KOG1983 Tomosyn and related SN 90.2 32 0.00069 40.7 20.6 72 251-327 197-268 (993)
473 PF10313 DUF2415: Uncharacteri 90.1 1.5 3.2E-05 28.8 5.5 31 336-366 1-34 (43)
474 PF08728 CRT10: CRT10; InterP 89.5 8 0.00017 42.9 14.1 115 5-122 103-246 (717)
475 PRK14131 N-acetylneuraminic ac 89.2 30 0.00066 35.9 22.3 15 224-238 189-203 (376)
476 KOG2247 WD40 repeat-containing 88.9 0.054 1.2E-06 55.1 -2.4 142 250-392 32-175 (615)
477 PF10433 MMS1_N: Mono-function 88.9 39 0.00085 36.8 25.8 104 210-321 218-340 (504)
478 KOG1898 Splicing factor 3b, su 88.8 50 0.0011 38.0 25.7 74 58-132 549-628 (1205)
479 TIGR03548 mutarot_permut cycli 88.8 29 0.00062 35.2 21.0 95 213-314 123-233 (323)
480 KOG4460 Nuclear pore complex, 88.7 12 0.00026 39.2 13.6 29 202-230 103-131 (741)
481 PF11635 Med16: Mediator compl 88.2 55 0.0012 37.6 20.8 77 201-277 258-345 (753)
482 TIGR03547 muta_rot_YjhT mutatr 88.1 34 0.00073 35.1 20.7 219 170-398 21-332 (346)
483 COG3823 Glutamine cyclotransfe 87.8 22 0.00048 32.7 13.5 162 223-395 67-247 (262)
484 PLN02193 nitrile-specifier pro 87.7 44 0.00095 36.0 18.7 151 213-369 228-414 (470)
485 KOG2247 WD40 repeat-containing 87.7 0.059 1.3E-06 54.8 -3.1 146 205-361 37-184 (615)
486 PF10214 Rrn6: RNA polymerase 87.2 64 0.0014 37.3 26.8 122 201-324 144-277 (765)
487 PF14781 BBS2_N: Ciliary BBSom 87.0 18 0.00039 30.8 13.2 109 258-369 4-129 (136)
488 PRK14131 N-acetylneuraminic ac 86.8 42 0.00092 34.9 22.3 21 13-34 38-59 (376)
489 PLN02153 epithiospecifier prot 86.8 40 0.00086 34.5 20.0 151 213-368 85-287 (341)
490 PF02333 Phytase: Phytase; In 86.7 41 0.00088 34.6 22.8 196 17-283 70-291 (381)
491 PLN02153 epithiospecifier prot 86.6 41 0.00088 34.4 21.0 25 13-38 32-63 (341)
492 COG4590 ABC-type uncharacteriz 86.3 11 0.00024 38.5 11.7 163 200-369 218-390 (733)
493 TIGR03548 mutarot_permut cycli 85.7 43 0.00093 33.9 19.5 107 213-326 72-197 (323)
494 KOG4659 Uncharacterized conser 85.5 86 0.0019 37.2 22.2 330 22-403 324-759 (1899)
495 PF12657 TFIIIC_delta: Transcr 85.4 4.4 9.5E-05 36.7 8.1 31 93-123 86-122 (173)
496 TIGR02276 beta_rpt_yvtn 40-res 85.4 3.5 7.6E-05 26.7 5.6 32 12-43 1-32 (42)
497 PF07676 PD40: WD40-like Beta 85.3 4 8.6E-05 26.1 5.7 35 328-362 1-38 (39)
498 PF08801 Nucleoporin_N: Nup133 85.2 51 0.0011 34.9 17.3 195 46-320 26-286 (422)
499 PF03022 MRJP: Major royal jel 85.2 42 0.00091 33.3 23.3 167 225-394 35-253 (287)
500 PF11715 Nup160: Nucleoporin N 85.0 3.9 8.6E-05 45.1 9.1 72 303-374 156-257 (547)
No 1
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-110 Score=849.10 Aligned_cols=658 Identities=44% Similarity=0.740 Sum_probs=592.0
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 81 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~ 81 (685)
.|+|++++|+.||.++||+|+..|.+.+||++..+.+..++..|.+.|....|.|..+.++|++.|+++++|-++++++.
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 38999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred CceeEecccCCCCCeEEEEe-cCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc-ccccccCceeeeec
Q 005656 82 PRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK-EEELKLKPVIAFDC 159 (685)
Q Consensus 82 ~~~~~~~~~h~~~v~~i~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 159 (685)
+++++.+.||..|+.||+|+ .+|.++++++.|++++.+++....+.+++.+.+..+++++.+.. ....+++|+..|+.
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 99999999999999999999 57999999999999999999999988888886666777777766 78899999999999
Q ss_pred ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC--CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE--NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
...|+.+|++++++|.+....++|++++...|.+.+.+.+. ....++++++++||++.++|++.|.|.+||+++|.++
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 99999999999999999999999999999999999987643 4467899999999999999999999999999999999
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
..|. ....|.++|++++.+..++.+++++.+|.+++||+.++.++..+..+..+.++.++....+++++++|-.|
T Consensus 484 ~sf~-----~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I 558 (910)
T KOG1539|consen 484 KSFG-----DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSI 558 (910)
T ss_pred cccc-----cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeE
Confidence 9985 23489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC
Q 005656 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d 397 (685)
+++|..+.+.++.|.||.+.|++++|||||+||++++.|++|++||++++.+++.+..+.+++++.|||+|++|||+|.|
T Consensus 559 ~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 559 RVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred EEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCcCCCCCCCCCCCCccceeecCCCccCCCCcCCCCCCCCCCcCCCCCCCCCCCCCCcCCCCcCceeecC
Q 005656 398 QNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSL 477 (685)
Q Consensus 398 ~~~I~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 477 (685)
+++|++|.|+.+|..+ .+++++.++.+..+.+|+.+.+.+.++++.. -|.. ++...|.+++|++++|+|||.
T Consensus 639 ~~gIylWsNkslF~~v-s~r~~~~~~~~~~v~lPst~~~~d~e~~~~t------LE~~-~e~i~y~~~eQldeeLvTlS~ 710 (910)
T KOG1539|consen 639 QNGIYLWSNKSLFKSV-STRAIPADYVPSWVMLPSTCDEDDDEDDEVT------LESN-DEDIKYSSPEQLDEELVTLSK 710 (910)
T ss_pred CceEEEEEchhHheec-cccccCcccccceeecCcccccccchhhhhh------hhcc-ccccccCChhHhChhhhhhcc
Confidence 9999999999999999 6889999998899999996655544332221 1111 223389999999999999999
Q ss_pred CcHhHHhhccchHHHHhhcCCCCCCCCCCCCCccccCCCCCCCccccCCCCCccccccccccCCCCC--CCCCccHHHHH
Q 005656 478 LPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTK--PDIPVSQFIQL 555 (685)
Q Consensus 478 ~~~~~~~~~~~l~~i~~r~k~~~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 555 (685)
||++||++|+|||.||+||||+||||+|++||||||+++. ++.....+..+ ++++++.+..-++ ....+++|.++
T Consensus 711 lp~Srwq~Ll~LelIk~RnkPke~PK~pkkaPFFLp~~~s-~g~v~e~~~~~--~~~~~~~~~~ik~~~~L~~es~F~~~ 787 (910)
T KOG1539|consen 711 LPRSRWQNLLNLELIKKRNKPKEPPKKPKKAPFFLPKVPS-EGLVLETPAAE--ELNKEEDENKIKKLGLLELESSFTTL 787 (910)
T ss_pred CcHHHhhhcccHHHHHhcCCCCCCCCccccCCcccccCCc-ccccccCcchh--hhcchhhhhhhhccccccccchHHHH
Confidence 9999999999999999999999999999999999999995 22111112111 1111111111122 22348999999
Q ss_pred HhhccccCChHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 005656 556 LHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFL 635 (685)
Q Consensus 556 l~~~~~~~~~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l 635 (685)
|+++..+++|..++++|++++||+||+|||+|.... +++..+..|++++.++|.+++||||+|||+++|+
T Consensus 788 Lre~~~s~~~~~~~~~L~~~~psaiD~eiRsL~d~~----------~~~~~~~~Fi~~l~~~l~~k~nFEL~qa~~slf~ 857 (910)
T KOG1539|consen 788 LREGKDSKDFLDAFALLKNLSPSAIDFEIRSLNDAG----------ETIEEMVIFIKMLTQMLKTKRNFELVQAYMSLFL 857 (910)
T ss_pred HhhccccccHHHHHHHHHhcCcchheeehhhhhccC----------cchHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999995211 3789999999999999999999999999999999
Q ss_pred Hhhccccccch---HHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhccccCC
Q 005656 636 KIHGETVRCHT---KLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL 685 (685)
Q Consensus 636 ~~h~~~l~~~~---~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (685)
|+||..|..++ +|.+.|+.+.++|+.+|++|+++|.+|+|+|.|++++++
T Consensus 858 K~H~~~l~~~~~~~dl~e~l~~~~~v~~e~wq~le~l~~~~mgvl~~l~nall 910 (910)
T KOG1539|consen 858 KSHGLVLWNHEGPEDLTEELQNWEEVQSEEWQRLEELFLYCMGVLAFLKNALL 910 (910)
T ss_pred HhhhhhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHhhccC
Confidence 99999997555 799999999999999999999999999999999999874
No 2
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-55 Score=440.41 Aligned_cols=638 Identities=17% Similarity=0.260 Sum_probs=456.3
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--------eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 73 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW 73 (685)
+.+|.|+.|||||+ ++|+|. .+.+.||..... .+.++.. +|...|+++.|+.|.++|++||.|.++++|
T Consensus 96 k~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~-g~fddi~si~Ws~DSr~l~~gsrD~s~rl~ 172 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYL-GHFDDITSIDWSDDSRLLVTGSRDLSARLF 172 (893)
T ss_pred cCccceEEECCCCc-EEEEEe-cceeEEEecCcchhcccCcceEeeeec-CCccceeEEEeccCCceEEeccccceEEEE
Confidence 57899999999999 777765 577999987542 2345555 899999999999999999999999999999
Q ss_pred EecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce--ee-----------------------
Q 005656 74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ--SR----------------------- 128 (685)
Q Consensus 74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~----------------------- 128 (685)
.++...+ -....+.+|..+|.+.-|..+...+++.+.||.+.+|....... ..
T Consensus 173 ~v~~~k~--~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~ 250 (893)
T KOG0291|consen 173 GVDGNKN--LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHK 250 (893)
T ss_pred Eeccccc--cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcc
Confidence 9987644 34566789999999999999999999999999999998862100 00
Q ss_pred ---Eec-hhhHHHHHhhccccccccc-cCceeeeeccccc-------------------------ccCCcceEEEEcCCc
Q 005656 129 ---ELS-QRHVAKRARKLKMKEEELK-LKPVIAFDCAEIR-------------------------ERDWCNVVTCHMDTA 178 (685)
Q Consensus 129 ---~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~ 178 (685)
... .........++........ ..-++.|+..... ...++.+......-+
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klg 330 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLG 330 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccc
Confidence 000 0000000000000000000 0000111111110 112334445555567
Q ss_pred eEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEE
Q 005656 179 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 258 (685)
Q Consensus 179 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l 258 (685)
.+.+|+.+... ......+|...+.+++++|||.++++|++||.|++||.++|-+..+|. .|+..|+++
T Consensus 331 QLlVweWqsEs----YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt--------eHts~Vt~v 398 (893)
T KOG0291|consen 331 QLLVWEWQSES----YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT--------EHTSGVTAV 398 (893)
T ss_pred eEEEEEeeccc----eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec--------cCCCceEEE
Confidence 88888876532 222334788999999999999999999999999999999999999886 899999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCc--eeEEEEeecCCEEEEEeCCC-eEEEEEcCCCeeEEEEecCC
Q 005656 259 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS--LVKIVYHRVNGLLATVADDL-VIRLFDVVALRMVRKFEGHT 335 (685)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~ 335 (685)
.|+..|+.+++++.||+|+.||+...+..+++..+.+ ..|++..|.|.++.+|+.|. .|++|++++|+.+-.+.||.
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE 478 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE 478 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC
Confidence 9999999999999999999999999999999988754 56788888899999998876 79999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCCCC
Q 005656 336 DRITDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS 414 (685)
Q Consensus 336 ~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~-~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~~~ 414 (685)
++|.+++|+|+|..|+++|.|.+||+||+-. ...+.++...+.++.++|+|||+-||+++.|| .|.+|+......-..
T Consensus 479 gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldg-qItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 479 GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDG-QITFFDIKEAVQVGS 557 (893)
T ss_pred CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecc-eEEEEEhhhceeecc
Confidence 9999999999999999999999999999865 45678888888999999999999999999998 999999766543211
Q ss_pred --CCCCCCCCccceeecCCCccCCCC------cCCCCCCCCCCcCCCCCCCCCCCCCCcCCCCcCceeecC---------
Q 005656 415 --NIDSYASGKEIVSVKMPSVSSVEG------CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSL--------- 477 (685)
Q Consensus 415 --~~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~--------- 477 (685)
....+..++.....-.....+... -+.+....- ..+.......|..+++..-....+|.
T Consensus 558 IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il----AgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~e 633 (893)
T KOG0291|consen 558 IDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL----AGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLE 633 (893)
T ss_pred ccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE----ecCCcccEEEEECchhheeeeEEeccccchhHHHH
Confidence 111121221111000000000000 000000000 11222233344444443333333332
Q ss_pred -CcHhHHhhccchHHHHhhcCCCCCCCC---CCC----------C-------CccccCCC--------C-----CCCccc
Q 005656 478 -LPKSQWQSLINLDIIKARNKPIEPPKK---PEK----------A-------PFFLPSVP--------S-----LSGEIL 523 (685)
Q Consensus 478 -~~~~~~~~~~~l~~i~~r~k~~~~~~~---~~~----------~-------pffl~~~~--------~-----~~~~~~ 523 (685)
|.+.++...-+++.|..++--.|+.-. |.. . --|.||.. | ++..++
T Consensus 634 fln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~ 713 (893)
T KOG0291|consen 634 FLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTIL 713 (893)
T ss_pred HhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceE
Confidence 445566666677777765544443211 000 0 12334322 2 333455
Q ss_pred cCCCCCccccccccccCCCCCCCCCccHHHHHHhhccccCChHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCccc
Q 005656 524 FKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPE 603 (685)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~ 603 (685)
|+|-.. +.+..+...+....+.+|.+.|..+++.|+|..+-++|.+.++..|.+...+|+
T Consensus 714 FDPf~L-----D~~vTPe~v~~al~~qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp--------------- 773 (893)
T KOG0291|consen 714 FDPFDL-----DVDVTPESVREALREQEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLP--------------- 773 (893)
T ss_pred Eccccc-----ccccCHHHHHHHHhcchHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCc---------------
Confidence 555322 111111112222336789999999999999999999999999999999999885
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccccccchH-HHHHHHHHHHHHHHHHHHHHHhhhccchhhhhcc
Q 005656 604 YLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTK-LQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLS 681 (685)
Q Consensus 604 ~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~~~l~~~~~-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (685)
..++..+|++|...+...++.|++..|++.+|..||.+|.+... +.+.|..|++.+.+..+.+-+++.+|..+|+||-
T Consensus 774 ~~y~erll~~l~~~l~~s~HieF~l~W~~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L~~lv 852 (893)
T KOG0291|consen 774 TAYLERLLKALSRFLENSPHIEFYLRWLRAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTLRYLV 852 (893)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 47899999999999999999999999999999999999977655 6788999999999999999999999999999984
No 3
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=100.00 E-value=2.5e-55 Score=409.11 Aligned_cols=214 Identities=41% Similarity=0.710 Sum_probs=185.0
Q ss_pred CCCCCcCCCCcCceeecCCcHhHHhhccchHHHHhhcCCCCCCCCCCCCCccccCCCCCCCccc--cCCCCCcccccccc
Q 005656 460 FGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEIL--FKPSESTKEDTESL 537 (685)
Q Consensus 460 ~~~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~i~~r~k~~~~~~~~~~~pffl~~~~~~~~~~~--~~~~~~~~~~~~~~ 537 (685)
..|.+++|+.+++||||++|++||++|+|||.||+||||++|||+|++|||||||++++++.+. .......+.+.+..
T Consensus 17 ~~~~s~~Qi~~~LiTLS~lP~srWq~Ll~LD~IK~RNKPkeppKkPe~APFFLpt~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (237)
T PF04192_consen 17 IEYSSPEQIDEDLITLSGLPRSRWQNLLNLDVIKERNKPKEPPKKPEKAPFFLPTLPGLEPRFQDAFESEEEEEEEEERS 96 (237)
T ss_pred cccCChhhhCccceeeccCCHHHHHHHHHHHHHHHhCCCCCCCCCcCCCCcccCcCCCCCccccccccccccccchhhhh
Confidence 3489999999999999999999999999999999999999999999999999999999888762 11111100000000
Q ss_pred c--cCCCCCCCCCccHHHHHHhhccccCChHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHH
Q 005656 538 K--VGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLI 615 (685)
Q Consensus 538 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 615 (685)
. ..........++.|+++|.++...+||..+++|||+|+||+||+|||+|++..+ +++..|..||+||+
T Consensus 97 ~~~~~~~~~~~~~~s~f~~lL~~~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~~---------~~~~~l~~Fl~~l~ 167 (237)
T PF04192_consen 97 RLRKLKKDNSLDFESEFTRLLRSASESEDYSEFLEYLKSLSPSAIDLEIRSLSPESG---------GSYEELVSFLRFLT 167 (237)
T ss_pred hhhhcccccCccccCHHHHHHHhhcccccHHHHHHHHHhCChhHHHHHHHhccCccC---------CcHHHHHHHHHHHH
Confidence 0 111112233689999999999999999999999999999999999999996443 37899999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhccccccchH---HHHHHHHHHHHHHHHHHHHHHhhhccchhhhhccc
Q 005656 616 HEISCRNNFEFIQAVIRLFLKIHGETVRCHTK---LQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSN 682 (685)
Q Consensus 616 ~~l~~~~~~e~~~~~l~~~l~~h~~~l~~~~~---l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (685)
++|++++||||+|+||++|||+||+.|++.++ |++.|.+|+++|++.|.+|+++|+||+|+|+||++
T Consensus 168 ~~L~~~~dfElvQa~l~vFLk~Hgd~i~~~~~~~~L~~~l~~l~~~q~~~w~~L~~l~~~~~cvv~fl~~ 237 (237)
T PF04192_consen 168 YRLKSRRDFELVQAYLSVFLKVHGDVIMESEEEEELREALEELREAQESEWKRLDDLFQYCSCVVSFLRS 237 (237)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Confidence 99999999999999999999999999999988 99999999999999999999999999999999986
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-53 Score=392.93 Aligned_cols=322 Identities=19% Similarity=0.302 Sum_probs=292.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.++|-|++|+|+|. .||+|+.|.++++||+.+..+..+.+ +|...|.|++|+|||+.||+|+.||+|++||..++.
T Consensus 114 H~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~- 190 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ- 190 (480)
T ss_pred CCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-
Confidence 889999999999999 99999999999999999999999999 999999999999999999999999999999987775
Q ss_pred CCceeEecccCCCCCeEEEEec-----CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYA-----NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
...+.+.+|...|++++|.| ..++|++++.||.++|||+..+.+...+.
T Consensus 191 --~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls------------------------ 244 (480)
T KOG0271|consen 191 --QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS------------------------ 244 (480)
T ss_pred --cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec------------------------
Confidence 45567789999999999976 47799999999999999998887766654
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 235 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~ 235 (685)
+|..+|+|+.|-.+ .++++|+.|++|++|+...|.
T Consensus 245 --------------------------------------------gHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 245 --------------------------------------------GHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred --------------------------------------------cCccceEEEEEcCC-ceEEecCCCceEEEEEccchh
Confidence 88999999999865 489999999999999999998
Q ss_pred cccccccccccccCCCCcCEEEEEEc-----------CCCC-------------------------EEEEEECCCeEEEE
Q 005656 236 SRGSYLDMSERSNYAHNGEVVGVACD-----------STNT-------------------------LMISAGYHGDIKVW 279 (685)
Q Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~l~~~-----------~~~~-------------------------~l~s~s~dg~i~iw 279 (685)
....+. +|...|+.++.+ |.++ .+++|+.|.++.+|
T Consensus 280 ~~r~lk--------GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 280 LCRELK--------GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred HHHhhc--------ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 888775 999999998876 3233 49999999999999
Q ss_pred ECCC-CceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656 280 DFKG-RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 280 d~~~-~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg 357 (685)
+-.. .+++.....+ .-|+.+.|+||++++|+++-|.+|++||-++|+.+.+|+||-+.|+.++||.|.++|++||.|.
T Consensus 352 ~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs 431 (480)
T KOG0271|consen 352 NPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS 431 (480)
T ss_pred cccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCc
Confidence 9653 4455555444 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 358 SLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 358 ~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
++++|++.+.++...+.+|.. |.++.|+|||..+++++.|. .+++|.
T Consensus 432 TLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk-v~~lw~ 479 (480)
T KOG0271|consen 432 TLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK-VLRLWR 479 (480)
T ss_pred eEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce-EEEeec
Confidence 999999999999999986665 99999999999999999997 999995
No 5
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-47 Score=382.67 Aligned_cols=603 Identities=18% Similarity=0.260 Sum_probs=413.0
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+..|+++.|+..|. .||+|+.|+.|.+||+-...-...++ ||.+.|+..-|..+.+++++.|.|+.|++||+++.
T Consensus 106 HK~AVt~l~fd~~G~-rlaSGskDt~IIvwDlV~E~Gl~rL~-GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq-- 181 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGT-RLASGSKDTDIIVWDLVGEEGLFRLR-GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ-- 181 (888)
T ss_pred cccceEEEEEcccCc-eEeecCCCccEEEEEeccceeeEEee-cchHHHhHHhccCCCeEEEEeccCceEEEEecccc--
Confidence 889999999999999 99999999999999999988889998 99999999999998899999999999999999998
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc------------------------eeeEe------
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ------------------------QSREL------ 130 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~------------------------~~~~~------ 130 (685)
.+..+...|.+.++.+++.+ +.+++++.|+.+++|++.... .....
T Consensus 182 --hCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 182 --HCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred --eeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 78888889999999999987 689999999999999992110 00000
Q ss_pred -----------------chh----hHHHH---Hhhccccc-----------------ccccc-Ccee-------------
Q 005656 131 -----------------SQR----HVAKR---ARKLKMKE-----------------EELKL-KPVI------------- 155 (685)
Q Consensus 131 -----------------~~~----~~~~~---~~~~~~~~-----------------~~~~~-~~~~------------- 155 (685)
... ...++ .++..... ...+. ..+.
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence 000 00110 11110000 00000 0000
Q ss_pred ------------eeec-ccc-----c----------------ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656 156 ------------AFDC-AEI-----R----------------ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 201 (685)
Q Consensus 156 ------------~~~~-~~~-----~----------------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 201 (685)
++.. ... + ....++.+.++.....+.+|+......-... .
T Consensus 338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi------~ 411 (888)
T KOG0306|consen 338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI------T 411 (888)
T ss_pred EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe------c
Confidence 0000 000 0 0012345556666677888887654332222 1
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
...+.+..|-|.++++++|+.+|.+.+||+.+........ +|.+.|..++.+|+++.+++||.|.+|++||+
T Consensus 412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~--------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf 483 (888)
T KOG0306|consen 412 CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR--------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDF 483 (888)
T ss_pred cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh--------ccccceeeeeecCCCCceEEecCCcEEEEEeE
Confidence 3367888888888999999999999999988887776654 99999999999999999999999999999997
Q ss_pred CC-----Cc--------eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC
Q 005656 282 KG-----RD--------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 348 (685)
Q Consensus 282 ~~-----~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~ 348 (685)
.- +. ..+++.....|.|+.+||||++||++--|++|+||-+++-+..-.+.||.-||.+|..|||++
T Consensus 484 ~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk 563 (888)
T KOG0306|consen 484 KLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK 563 (888)
T ss_pred EEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcC
Confidence 51 11 114555668999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC------CcCCCCCCCC---
Q 005656 349 WLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC------MFSGDSNIDS--- 418 (685)
Q Consensus 349 ~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~------~~~~~~~~~~--- 418 (685)
.++|||.|.+|+||-+.-|.|...+..|. .|.++.|-|...++.+++.|+ .|+-||-.. ...+...+..
T Consensus 564 livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~-kvKqWDg~kFe~iq~L~~H~~ev~cLav 642 (888)
T KOG0306|consen 564 LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG-KVKQWDGEKFEEIQKLDGHHSEVWCLAV 642 (888)
T ss_pred eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc-eEEeechhhhhhheeeccchheeeeeEE
Confidence 99999999999999999999988876554 499999999999999999998 999997432 1122221111
Q ss_pred CCCCccceeecCCCccCCCCcCCCCC--CC-CCCcCCCCCCCCCCCCC--CcCCCCcCceeecCCcHhHHhhccchHHHH
Q 005656 419 YASGKEIVSVKMPSVSSVEGCQDENS--SQ-PDVHRTDRVPKDSFGLP--TFKQQIPDLVTLSLLPKSQWQSLINLDIIK 493 (685)
Q Consensus 419 ~~~~~~~~~~~~p~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ls~~~~~~~~~~~~l~~i~ 493 (685)
.+.+.-+..-.........+..+|.. ++ .+.++++..++....+. ..+...++.. .+.++ ++ ++.++
T Consensus 643 ~~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~ErEe~yE~l~~~~e~~~~~~~~~g~~----~~~sk-kT---ieSvk 714 (888)
T KOG0306|consen 643 SPNGSFVVSSSHDKSIRLWERTDEILILEEEKEGEREEEYETLLASEEVVAGDGSADGDA----GVASK-KT---IESVK 714 (888)
T ss_pred cCCCCeEEeccCCceeEeeeccCcceeeehhhhhhhHHHHHHhhhhcccccCCCcccccc----cchhh-hh---hHHHH
Confidence 11111111100000000000001000 00 00000111110000000 0000111100 00000 00 00000
Q ss_pred hhcCCCCCCCCCCCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCCCCccHHHHHHhhccccCChHHHHHHHh
Q 005656 494 ARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIK 573 (685)
Q Consensus 494 ~r~k~~~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 573 (685)
.-++..|+.. ...++..+. ++. +... |...+|. +.....-+.+++.|+
T Consensus 715 ~aE~i~ea~d-------------------------i~~~e~~~~-ee~--~~g~---P~npll~-a~~ks~e~yi~dtl~ 762 (888)
T KOG0306|consen 715 SAERILEALD-------------------------IGREELTQL-EEY--SPGH---PHNPLLN-AYNKSPEKYIVDTLM 762 (888)
T ss_pred HHHHHHHHHH-------------------------HHHHHHHhH-Hhh--cCCC---CCcHHHH-HhcCCHHHHHHHHHH
Confidence 0000000000 000000000 000 0000 1122332 222444578899999
Q ss_pred cCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccccccchHHHHHHH
Q 005656 574 SLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKAR 653 (685)
Q Consensus 574 ~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~~~l~~~~~l~~~~~ 653 (685)
..-.|.+|..+-.| |++++..+|+++...++.+.+.||+...+-.++|+|.+.|++++++++.|+
T Consensus 763 ~Ir~S~Ld~aLlll---------------PfS~V~~vl~~i~~~~q~~~~veLv~rv~~fL~rih~~~it~~~~~kp~l~ 827 (888)
T KOG0306|consen 763 KIRASELDDALLLL---------------PFSYVLDVLKFIDECIQRKSKVELVCRVLFFLLRIHHKQITAHKNMKPLLE 827 (888)
T ss_pred hcchhhhhhhheec---------------cHHHHHHHHHHHHHHHcCCCcceeEeeeeeehhhhhhhhhccccchHHHHH
Confidence 99999999988877 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhhcc
Q 005656 654 KLLEVQSAVWQKIDKMFQSARCVVSFLS 681 (685)
Q Consensus 654 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (685)
+++..++...+.+++..++|+.-|+||+
T Consensus 828 ~i~s~l~~~v~q~rdv~G~NlagL~~l~ 855 (888)
T KOG0306|consen 828 KIKSKLREIVEQLRDVLGFNLAGLSLLK 855 (888)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 9999999999999999999999999986
No 6
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-45 Score=370.32 Aligned_cols=544 Identities=20% Similarity=0.329 Sum_probs=401.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc--EEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~D~~v~iWd~~~~ 78 (685)
|++||--++|+|.|. ++|+|+.||.++|||+..+.+.+.++ ||.+.|.++.|.|+-. .|++|..|+++++||+...
T Consensus 104 He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~~~~th~fk-G~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGT-LLATGGADGRVKVWDIKNGYCTHSFK-GHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK 181 (775)
T ss_pred cCCCeEEEEEcCCCc-eEEeccccceEEEEEeeCCEEEEEec-CCCceEEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence 899999999999996 99999999999999999999999999 9999999999999765 6899999999999999865
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhH-----------HHHH--------
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV-----------AKRA-------- 139 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----------~~~~-------- 139 (685)
. .++.....|...|+++.|++|+..++++|+|..+.+||+.+.+..+.++.... ..+.
T Consensus 182 ~---tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 182 R---TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG 258 (775)
T ss_pred c---hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC
Confidence 3 36778889999999999999999999999999999999976554333321000 0000
Q ss_pred ---------------hhcccc-cccc-ccCc---------------e---------------------------------
Q 005656 140 ---------------RKLKMK-EEEL-KLKP---------------V--------------------------------- 154 (685)
Q Consensus 140 ---------------~~~~~~-~~~~-~~~~---------------~--------------------------------- 154 (685)
.+.... .++. ...+ +
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~ 338 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH 338 (775)
T ss_pred CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence 000000 0000 0000 0
Q ss_pred eeee--cccccc---------------------c--CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEE
Q 005656 155 IAFD--CAEIRE---------------------R--DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 209 (685)
Q Consensus 155 ~~~~--~~~~~~---------------------~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (685)
.+.+ ...+|. . .-...+.....+..+++|++++......+.....+|...|.+++
T Consensus 339 laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava 418 (775)
T KOG0319|consen 339 LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA 418 (775)
T ss_pred EEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee
Confidence 0000 000000 0 00123445556778899998666555556666678999999999
Q ss_pred EccCC-CEEEEEecCCcEEEEECCCCcccccccc-ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 005656 210 ISACG-NFAVLGTAGGWIERFNLQSGISRGSYLD-MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK 287 (685)
Q Consensus 210 ~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (685)
++..+ .++++++.|+++++|++...+....... ........|...|++++++|+.+.++|||.|.+.++|++....+.
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~ 498 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL 498 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE
Confidence 97755 6889999999999999987322221110 011123489999999999999999999999999999999999999
Q ss_pred EEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 288 SRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 288 ~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
.++..| ..+.++.|+|..+.+|+++.|++|+||.+.+..++++|.||...|..+.|-.+|+.|+|++.||-|++|++.+
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 998876 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCCCCCCCCCCCCccceeecCCCccCCCCcCCCCCC
Q 005656 367 ARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSS 445 (685)
Q Consensus 367 ~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 445 (685)
+.|+.++..|.. |++++.+|.+.+++||+.|+ .|.+|..... ++.+++
T Consensus 579 ~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg-~i~~wkD~Te----------------------------~~~~ee-- 627 (775)
T KOG0319|consen 579 NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG-RIIFWKDVTE----------------------------EEQNEE-- 627 (775)
T ss_pred hhhhhhhhhccceeEEEeecCccceeEecCCCe-EEEEeecCcH----------------------------HHHHHH--
Confidence 999999987766 99999999999999999998 8999952110 000000
Q ss_pred CCCCcCCCCCCCCCCCCCCcCCCCcCceeecCCcHhHHhhccchHHHHhhcCCCCCCCCCCCCCccccCCCCCCCccccC
Q 005656 446 QPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFK 525 (685)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~i~~r~k~~~~~~~~~~~pffl~~~~~~~~~~~~~ 525 (685)
. +... +++. +-|+|-|+=. +|.- .+|
T Consensus 628 -~----~K~~----------eaie------------q~QeL~n~l~----~~~~------~~A----------------- 653 (775)
T KOG0319|consen 628 -Q----EKRE----------EAIE------------QEQELENLLS----QKRY------TKA----------------- 653 (775)
T ss_pred -H----HHHH----------HHHH------------HHHHHHHHHh----hhhh------HHH-----------------
Confidence 0 0000 0000 0011211110 0000 000
Q ss_pred CCCCccccccccccCCCCCCCCCccHHHHHHhhccccCC----hHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCc
Q 005656 526 PSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKN----FSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKR 601 (685)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~ 601 (685)
+.-+...+. |..+-...++.+|..++.+|++|..
T Consensus 654 ------------------------------~~LA~tLd~P~~~f~vi~~~~r~r~~e~l~~av~~L~~------------ 691 (775)
T KOG0319|consen 654 ------------------------------FVLALTLDKPHLVFTVINALYRERDPEELGQAVFRLNE------------ 691 (775)
T ss_pred ------------------------------HHhHhhccCchhHHHHHHHHHhcCCcHHHHHHHHHhhh------------
Confidence 000000011 1222223456678899999999964
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhc
Q 005656 602 PEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHG-ETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFL 680 (685)
Q Consensus 602 ~~~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~-~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (685)
+....+|+|...+=...++--.+|..|..+|+.|- +-|.+.|-..+.++.|....++-.+|++++. +...+|.|.
T Consensus 692 ---dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid~~~-~~~~lLdf~ 767 (775)
T KOG0319|consen 692 ---DQPEALLQFVVKWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRIDRLV-QDSALLDFT 767 (775)
T ss_pred ---hhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHHHHh-hhhHHHHHh
Confidence 55778999998888877888899999999999874 3467788889999999999999999999984 445666664
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-46 Score=353.20 Aligned_cols=280 Identities=20% Similarity=0.348 Sum_probs=262.6
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC--CcEEEEecCCCcEEEEEecCCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD 79 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~~~~ 79 (685)
+.||..+.||+|+. .||||+.+|.++||+..+...+.++. +|.+.|.++.|+|. +..||||+.||++++|+++..
T Consensus 175 ~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 175 TRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred CCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 46899999999999 99999999999999999999999998 99999999999997 569999999999999999887
Q ss_pred CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656 80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 159 (685)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (685)
.++..+.+|...|..++|+|+|++|+|++.|.+-++||+.++...-..
T Consensus 252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q----------------------------- 299 (459)
T KOG0272|consen 252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ----------------------------- 299 (459)
T ss_pred ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-----------------------------
Confidence 778888999999999999999999999999999999999887643222
Q ss_pred ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656 160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 239 (685)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~ 239 (685)
.+|...|.+++|.++|..+++|+.|..-++||+++|..+..
T Consensus 300 ---------------------------------------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~ 340 (459)
T KOG0272|consen 300 ---------------------------------------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF 340 (459)
T ss_pred ---------------------------------------cccccccceeEecCCCceeeccCccchhheeecccCcEEEE
Confidence 18889999999999999999999999999999999999987
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEee-cCCEEEEEeCCCeE
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVADDLVI 317 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~-~~~~l~~~~~dg~I 317 (685)
+. +|..+|.+++|+|+|..++|||.|++++|||++..+.+.++..+ .-|+.+.|+| .|.+|++++.|+++
T Consensus 341 L~--------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 341 LA--------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred ec--------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcce
Confidence 76 99999999999999999999999999999999998888888766 7789999999 67799999999999
Q ss_pred EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
+||...++.+++++.||.+.|.++.++||+.+++|++.|.++++|.
T Consensus 413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999995
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-45 Score=344.54 Aligned_cols=314 Identities=22% Similarity=0.362 Sum_probs=250.2
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC-----CCcEEEEecCCCcEEEEEe
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIF 75 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~s~D~~v~iWd~ 75 (685)
|+..|.|++|+|||+ .||+|+.||+|++||.++++++..-..+|...|++++|.| ..++||+++.||+|+|||+
T Consensus 156 H~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred CccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 788999999999999 9999999999999999998877665559999999999976 5679999999999999999
Q ss_pred cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
..+ +++..+.||..+|+|++|-.+| ++++++.|++|++|+...+...+++.....
T Consensus 235 ~~~----~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah-------------------- 289 (480)
T KOG0271|consen 235 KLG----TCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH-------------------- 289 (480)
T ss_pred cCc----eEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--------------------
Confidence 887 8899999999999999998666 899999999999999998887766643211
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC-C--CCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN-P--TAVKACTISACGNFAVLGTAGGWIERFNLQ 232 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~--~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~ 232 (685)
|.+-+.+..+- .+++ ...........+.... . -.-...+.-..+..+++|+.|+++.+|+..
T Consensus 290 -----------wvN~lalsTdy-~LRt---gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 290 -----------WVNHLALSTDY-VLRT---GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred -----------heeeeeccchh-hhhc---cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence 11111111000 0000 0000000000000000 0 000001111234679999999999999976
Q ss_pred CCc-cccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEE
Q 005656 233 SGI-SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLAT 310 (685)
Q Consensus 233 ~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~ 310 (685)
... ++... .+|..-|+.+.|+||++++++++.|..|++||-++|+.+.++..+ .+|..++|+.|.++|++
T Consensus 355 ~~kkpi~rm--------tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 355 KSKKPITRM--------TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred ccccchhhh--------hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 544 33333 299999999999999999999999999999999999999999966 99999999999999999
Q ss_pred EeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 311 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 311 ~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
|+.|.++++||+++.+....+.||...|.++.|+|||..+++|+.|..+++|.
T Consensus 427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999995
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.8e-44 Score=339.94 Aligned_cols=281 Identities=17% Similarity=0.287 Sum_probs=262.3
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEe
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSV 121 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~ 121 (685)
+-+.+|..+.|++|+..|+|||-+|.+++|+.... ..+..+.||...|.++.|+|. +..++||+.||++++|++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~----~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC----NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc----ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 67789999999999999999999999999988766 677888999999999999996 678999999999999999
Q ss_pred ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 201 (685)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 201 (685)
.+......+. +|
T Consensus 249 ~~e~~l~~l~--------------------------------------------------------------------gH 260 (459)
T KOG0272|consen 249 SQETPLQDLE--------------------------------------------------------------------GH 260 (459)
T ss_pred CCCcchhhhh--------------------------------------------------------------------cc
Confidence 8765544443 78
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
...|..++|+|+|++|++++.|.+-++||+.++....... +|...|.+++|.++|..++|||.|..-+|||+
T Consensus 261 ~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE--------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE--------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred hhhheeeeecCCCceeeecccccchhhcccccchhhHhhc--------ccccccceeEecCCCceeeccCccchhheeec
Confidence 8899999999999999999999999999999998776554 99999999999999999999999999999999
Q ss_pred CCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 005656 282 KGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSL 359 (685)
Q Consensus 282 ~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I 359 (685)
++++.+..+..+ .+|..+.|+|+|..||+|+.|++++|||++..+.+.++.+|.+-|+.+.|+| .|.+|+|+|.|+++
T Consensus 333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcce
Confidence 999999988876 8999999999999999999999999999999999999999999999999999 78899999999999
Q ss_pred EEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 360 RIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 360 ~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+||.-.++.++..+.+|.. |.++..+||+.++++++.|. ++++|.
T Consensus 413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR-T~KLW~ 458 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR-TIKLWR 458 (459)
T ss_pred eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc-eeeecc
Confidence 9999999999999998877 99999999999999999996 999995
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-42 Score=312.77 Aligned_cols=284 Identities=19% Similarity=0.356 Sum_probs=266.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC--
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT-- 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~-- 78 (685)
|.+.|.++.|++|++ .+++++.||.+.|||.-+....+.+. -....|..++|+|.|+++|+|+-|+...||++.+.
T Consensus 54 H~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 788999999999999 99999999999999998887777776 67889999999999999999999999999999876
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
++..+..+.+.+|.+-+.|+.|.+| .+|++++.|.+..+||+++++....+.
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~--------------------------- 183 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFH--------------------------- 183 (343)
T ss_pred cccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEec---------------------------
Confidence 4555677788999999999999875 489999999999999999999887775
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
+|.+.|.+++++| +++.+++|+.|+..++||++++..+
T Consensus 184 -----------------------------------------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~ 222 (343)
T KOG0286|consen 184 -----------------------------------------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV 222 (343)
T ss_pred -----------------------------------------CCcccEEEEecCCCCCCeEEecccccceeeeeccCccee
Confidence 8899999999999 9999999999999999999999999
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCC
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADD 314 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d 314 (685)
+.|. +|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.+. .+|++++|+..|++|++|..|
T Consensus 223 qtF~--------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 223 QTFE--------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred Eeec--------ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence 9887 99999999999999999999999999999999999988888765 789999999999999999999
Q ss_pred CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 315 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 315 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
.++.+||.-.++.+..+.||.++|+++..+|||.-|++||.|.++|||.
T Consensus 295 ~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 295 FTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999999999999999994
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-40 Score=319.53 Aligned_cols=324 Identities=21% Similarity=0.342 Sum_probs=279.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--e--eeEEee---------cccccCeeEEEEeCCCcEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--R--LQSVIR---------EAHDNAIISLHFFANEPVLMSASAD 67 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--~--~~~~~~---------~~h~~~V~~l~~sp~~~~l~s~s~D 67 (685)
|+.+|.+.+|+|-...++|+|+.|-..++|++... . ....++ ...+..|++++|+.+|..||+|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 78899999999976668999999999999998751 1 111111 1123679999999999999999999
Q ss_pred CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656 68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 147 (685)
Q Consensus 68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (685)
|.+++|+.+. .++.++..|.+||.++.|+..|.||++++.||++.+||..++.....+.
T Consensus 257 G~~riw~~~G-----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~---------------- 315 (524)
T KOG0273|consen 257 GEARIWNKDG-----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE---------------- 315 (524)
T ss_pred cEEEEEecCc-----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee----------------
Confidence 9999998664 5678888999999999999999999999999999999998887766553
Q ss_pred ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656 148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 227 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 227 (685)
.+..+...+.|-. ...+++.+.||.|+
T Consensus 316 ----------------------------------------------------~~s~~~lDVdW~~-~~~F~ts~td~~i~ 342 (524)
T KOG0273|consen 316 ----------------------------------------------------FHSAPALDVDWQS-NDEFATSSTDGCIH 342 (524)
T ss_pred ----------------------------------------------------eccCCccceEEec-CceEeecCCCceEE
Confidence 2233334445543 34578888999999
Q ss_pred EEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecC-
Q 005656 228 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN- 305 (685)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~- 305 (685)
++.+....+..++. +|.+.|.++.|+|.|.+|++++.|++++||+.........+..+ ..|..+.|+|.|
T Consensus 343 V~kv~~~~P~~t~~--------GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 343 VCKVGEDRPVKTFI--------GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred EEEecCCCcceeee--------cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence 99999888888876 89999999999999999999999999999998877766666544 688999999864
Q ss_pred --------CEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc
Q 005656 306 --------GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 377 (685)
Q Consensus 306 --------~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~ 377 (685)
..+++++.|++|++||+..+.++.+|..|..+|.+++|||+|+|+|+|+.||.|.+|+++++++++.+....
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 378 SITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 378 ~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.|..++|+-+|..|..+-.|+ .+++-+.+
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd~-~vcvldlr 523 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASDG-SVCVLDLR 523 (524)
T ss_pred eEEEEEEcCCCCEEEEEecCC-CceEEEec
Confidence 999999999999999999897 88887754
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.9e-40 Score=288.87 Aligned_cols=292 Identities=15% Similarity=0.324 Sum_probs=256.1
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCC
Q 005656 13 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 92 (685)
Q Consensus 13 dg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~ 92 (685)
|..-+||++++|.+|++|...+|.+..+++ ..++.|+.+...|+++.||+++. ..||+||+++... .++.++.+|.
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--~Pv~t~e~h~ 83 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--NPVATFEGHT 83 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--CceeEEeccC
Confidence 334589999999999999999999999998 66789999999999999998875 5899999987654 4778889999
Q ss_pred CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656 93 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 172 (685)
Q Consensus 93 ~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (685)
..|+++.|..+|+++++||.||+++|||++...+.+.+
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~------------------------------------------ 121 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY------------------------------------------ 121 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc------------------------------------------
Confidence 99999999999999999999999999999875544443
Q ss_pred EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCC
Q 005656 173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 252 (685)
Q Consensus 173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~ 252 (685)
.+..+|.++..+|+...|++|..+|.|++||+....+...+.. ...
T Consensus 122 ---------------------------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP-------e~~ 167 (311)
T KOG0315|consen 122 ---------------------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP-------EDD 167 (311)
T ss_pred ---------------------------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC-------CCC
Confidence 4578999999999999999999999999999999877766542 455
Q ss_pred cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc------eEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656 253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------LKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 325 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~ 325 (685)
..|.++.+.|+|.+++.+...|..++|++-+.. ++.++.. .+.+..+.+||++++||+++.|.+++||+.++.
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 789999999999999999999999999987653 3333433 478999999999999999999999999999988
Q ss_pred -eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEE
Q 005656 326 -RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSL 384 (685)
Q Consensus 326 -~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~ 384 (685)
+.-..+.+|...+.+++||.||+||++|+.|+++++|++..++.+..+.+|.. ..|++.
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 77778899999999999999999999999999999999999999998876544 666654
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-38 Score=308.38 Aligned_cols=373 Identities=15% Similarity=0.238 Sum_probs=296.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|...|++++|-|.....++||+.|++|.+|+-...+...+++ .|..-|+|+.|+|||.+++|++.||++.+||=.++
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r-~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg-- 222 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR-EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG-- 222 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccc-ccccceeeEEECCCCCeEEEecCCccEEEEcCCCc--
Confidence 677899999999998899999999999999988888888888 89999999999999999999999999999986666
Q ss_pred CCceeEecc---cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 81 DPRLLRFRS---GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 81 ~~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
..+..+. +|.+.|.+++|+||+..+++++.|.++++||+.+.+..+++....... ..
T Consensus 223 --e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~----------dq-------- 282 (603)
T KOG0318|consen 223 --EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE----------DQ-------- 282 (603)
T ss_pred --cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh----------ce--------
Confidence 4455554 899999999999999999999999999999999999888875432100 00
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
....+.. .+.+++ -.-++.+..++..... .+....+|...|++++.+++++++++|+.||.|.-|+..+|..-
T Consensus 283 qvG~lWq--kd~lIt-VSl~G~in~ln~~d~~----~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 283 QVGCLWQ--KDHLIT-VSLSGTINYLNPSDPS----VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EEEEEEe--CCeEEE-EEcCcEEEEecccCCC----hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 0000000 111222 2233455555555443 33444589999999999999999999999999999999998776
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc------------eE------------------
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------------LK------------------ 287 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~------------------ 287 (685)
..... .|...|.+++.+..+ .+++++.|.++++.++.... +.
T Consensus 356 ~~~g~-------~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 356 RLAGK-------GHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ccccc-------cccceEEEEeecCCC-cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 55432 899999999987654 48889999999999774321 00
Q ss_pred ----------EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee--EEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 005656 288 ----------SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWLLSSGM 355 (685)
Q Consensus 288 ----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~~~I~~l~~spdg~~l~s~s~ 355 (685)
..........+++++|++..+++|+.|+.|+||.+..+.. ......|.++|++++||||+.|||+|..
T Consensus 428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 428 IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred EEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc
Confidence 0111124467889999999999999999999999987653 3345679999999999999999999999
Q ss_pred CCcEEEEEcCCCceee-EEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCC
Q 005656 356 DGSLRIWDVILARQID-AIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG 412 (685)
Q Consensus 356 Dg~I~iwd~~~~~~i~-~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~ 412 (685)
.+.|.+||+.+.+... .+. +...|.+++|+|+..++|+|+.|- .|.||+....-..
T Consensus 508 ~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt-~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 508 SRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT-NVIIYSVKKPAKH 565 (603)
T ss_pred CCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc-eEEEEEccChhhh
Confidence 9999999999887632 233 445599999999999999999996 8999997765544
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-39 Score=292.14 Aligned_cols=284 Identities=20% Similarity=0.308 Sum_probs=251.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-----CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-----RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 75 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-----~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~ 75 (685)
|++.|+.++..+.+..++++++.|..|.+|++.. |..++.+. ||...|..+..++||++.++++.|+++++||+
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccceEEEEEe
Confidence 8899999999999877999999999999998764 66788888 89999999999999999999999999999999
Q ss_pred cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
.++ +..+.+.||...|.+++|++|.+.+++|+.|.+|++|++..+.......
T Consensus 93 ~~g----~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~------------------------ 144 (315)
T KOG0279|consen 93 ATG----ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE------------------------ 144 (315)
T ss_pred cCC----cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec------------------------
Confidence 987 6667778999999999999999999999999999999986554322211
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEECCC
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQS 233 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~g~~dg~i~~~d~~~ 233 (685)
..+...|.|+.|+|+ ..+++.++.|+.|++||+++
T Consensus 145 -------------------------------------------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 145 -------------------------------------------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred -------------------------------------------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 023678999999998 68899999999999999999
Q ss_pred CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC
Q 005656 234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD 313 (685)
Q Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 313 (685)
.+....+. +|++.++.++++|||..+++|+.||.+.+||++.++.+..+.+...|.+++|+|+.-.|+.+.
T Consensus 182 ~~l~~~~~--------gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at- 252 (315)
T KOG0279|consen 182 CQLRTTFI--------GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT- 252 (315)
T ss_pred cchhhccc--------cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-
Confidence 99988876 999999999999999999999999999999999999999999999999999999776666554
Q ss_pred CCeEEEEEcCCCeeEEEEec----C-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 314 DLVIRLFDVVALRMVRKFEG----H-----TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~~~~----h-----~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
+..|+|||+.++.++..++. . .-....++||+||..|++|-.|+.|++|.+.
T Consensus 253 ~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 253 ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 45699999999988776652 2 2235678999999999999999999999875
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.7e-39 Score=323.97 Aligned_cols=321 Identities=20% Similarity=0.395 Sum_probs=281.5
Q ss_pred CcEEEEEEccCCCCEEEEEeCC-CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASS-GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 81 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~d-g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~ 81 (685)
.+|..++|+..|. +||.|+.. |.+.||++.+...+...+ +|...+++++++|||+++|||+.||.|+|||...+
T Consensus 308 ~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--- 382 (893)
T KOG0291|consen 308 QKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG--- 382 (893)
T ss_pred ceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---
Confidence 5789999999999 88888754 899999999998888887 99999999999999999999999999999998877
Q ss_pred CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
-++.++..|+..|+.+.|+..|+.+++++-||+||.||+...+..+++..
T Consensus 383 -fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~----------------------------- 432 (893)
T KOG0291|consen 383 -FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS----------------------------- 432 (893)
T ss_pred -eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-----------------------------
Confidence 78999999999999999999999999999999999999988877666642
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEECCCCcccccc
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSY 240 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~~~d~~~~~~~~~~ 240 (685)
+.+....|++..|.|..+.+|+.|. .|++|++++|+....+
T Consensus 433 --------------------------------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 433 --------------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred --------------------------------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh
Confidence 3355678999999999999999886 7999999999998877
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC-CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
. +|.++|.+++|+|.+..|+++|+|.+|++||+-. ...+.++.....+..++|+|+|+.||+++-||.|.+
T Consensus 475 s--------GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf 546 (893)
T KOG0291|consen 475 S--------GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITF 546 (893)
T ss_pred c--------CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEE
Confidence 5 9999999999999999999999999999999864 356677888899999999999999999999999999
Q ss_pred EEcCCCeeEEEEec--------------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee----
Q 005656 320 FDVVALRMVRKFEG--------------------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV---- 375 (685)
Q Consensus 320 ~d~~~~~~~~~~~~--------------------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~---- 375 (685)
||+..+..+..+.| .....+.+++|+||.++++|+..+.|++|+++++-+++.+..
T Consensus 547 ~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 547 FDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred EEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence 99987766644432 224689999999999999999999999999988866554432
Q ss_pred -----------------------------------------------------ccceEEEEEcCCCCeEEEEEeCCCeEE
Q 005656 376 -----------------------------------------------------DVSITALSLSPNMDVLATAHVDQNGVY 402 (685)
Q Consensus 376 -----------------------------------------------------~~~v~~v~~spdg~~Lat~~~d~~~I~ 402 (685)
.-.|+++.|||+|+-+|+++..| |.
T Consensus 627 sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG--l~ 704 (893)
T KOG0291|consen 627 SLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG--LL 704 (893)
T ss_pred chhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc--eE
Confidence 01278999999999999999884 77
Q ss_pred EEEc
Q 005656 403 LWVN 406 (685)
Q Consensus 403 lW~~ 406 (685)
||..
T Consensus 705 IYsl 708 (893)
T KOG0291|consen 705 IYSL 708 (893)
T ss_pred EEec
Confidence 7764
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-39 Score=287.97 Aligned_cols=293 Identities=21% Similarity=0.309 Sum_probs=254.3
Q ss_pred eeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCC-CceeEecccCCCCCeEEEEecCCCEEEEEeCC
Q 005656 36 RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 113 (685)
Q Consensus 36 ~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d 113 (685)
....++. +|++.|+.++..+.+ ..+++++.|.++.+|++...+.. ...++.+.||...|..+..++||++.++++.|
T Consensus 6 ~l~~tl~-gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 6 VLRGTLE-GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred eeeeeec-CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 3455666 999999999999974 58999999999999999776432 35678889999999999999999999999999
Q ss_pred CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656 114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 193 (685)
Q Consensus 114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 193 (685)
+++++||+.+++..+.+.
T Consensus 85 ~~lrlWDl~~g~~t~~f~-------------------------------------------------------------- 102 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFV-------------------------------------------------------------- 102 (315)
T ss_pred ceEEEEEecCCcEEEEEE--------------------------------------------------------------
Confidence 999999999987666654
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEE
Q 005656 194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAG 271 (685)
Q Consensus 194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s 271 (685)
+|...|.+++|+++.+.+++|+.|.+|.+||+..+....... ..|.+.|+|+.|+|+ +.+|++++
T Consensus 103 ------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~-------~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 103 ------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE-------DSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred ------ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec-------CCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 788999999999999999999999999999998765543322 144889999999998 67999999
Q ss_pred CCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 005656 272 YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 350 (685)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l 350 (685)
.|++|++||+++.++...+..+ +.++.++++|||.++++|+.||.+.+||++.++.+..+. |...|.+++|+|+.-+|
T Consensus 170 ~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 170 WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWL 248 (315)
T ss_pred CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeE
Confidence 9999999999999988877665 889999999999999999999999999999999988876 88999999999987777
Q ss_pred EEEeCCCcEEEEEcCCCceeeEEeec---------cc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 351 LSSGMDGSLRIWDVILARQIDAIHVD---------VS-ITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 351 ~s~s~Dg~I~iwd~~~~~~i~~~~~~---------~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
+.+.. ..|+|||+.++.++..++.. .+ ..+++||+||..|+.+-.|+ .|++|...
T Consensus 249 ~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~-~irv~qv~ 313 (315)
T KOG0279|consen 249 CAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN-VIRVWQVA 313 (315)
T ss_pred eeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC-cEEEEEee
Confidence 76654 45999999999988877531 22 78899999999999999997 99999753
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-40 Score=304.28 Aligned_cols=282 Identities=24% Similarity=0.397 Sum_probs=259.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+.+|+.+-|+|+-. ++++++.|++|++||..++++...++ ||.+.|..++|+..|++|++++.|-.+++||++..
T Consensus 107 ~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-- 182 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-- 182 (406)
T ss_pred cccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhheeHHHH--
Confidence 678899999999987 99999999999999999999999999 99999999999999999999999999999998764
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
.++++...+|...|.++.|-|.|.++++++.|.+|+.|++.++.+.+.+.
T Consensus 183 -~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~----------------------------- 232 (406)
T KOG0295|consen 183 -FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP----------------------------- 232 (406)
T ss_pred -HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-----------------------------
Confidence 37788889999999999999999999999999999999998776655442
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
T Consensus 233 -------------------------------------------------------------------------------- 232 (406)
T KOG0295|consen 233 -------------------------------------------------------------------------------- 232 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeec---------------
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRV--------------- 304 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~--------------- 304 (685)
+|...|..+..+.||..+++++.|.+|++|-+.++++...+.. ..++.+++|.|.
T Consensus 233 ---------~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 233 ---------GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred ---------CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 7888999999999999999999999999999999977766654 478889888773
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEE
Q 005656 305 NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALS 383 (685)
Q Consensus 305 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~ 383 (685)
+.++.+++.|++|++||+.++.++.++.||.+.|.+++|+|.|+||+++.+|+++++||+.++++...+..+.. |+++.
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 25999999999999999999999999999999999999999999999999999999999999999999987666 99999
Q ss_pred EcCCCCeEEEEEeCCCeEEEEEc
Q 005656 384 LSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 384 ~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
|+.+..++++|+.|. .+++|..
T Consensus 384 fh~~~p~VvTGsVdq-t~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQ-TVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccc-eeeeeec
Confidence 999999999999998 9999963
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=287.92 Aligned_cols=291 Identities=18% Similarity=0.334 Sum_probs=257.4
Q ss_pred eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656 38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 117 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~ 117 (685)
.++++ ||.+.|.++.|++|+++|+++|.||.+.|||.-+. .....+.-....|..++|+|.|++++.|+-|+...
T Consensus 48 rr~Lk-GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt----nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 48 RRTLK-GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT----NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred EEEec-ccccceeeeEecCCcCeEEeeccCCeEEEEEcccc----cceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 36677 99999999999999999999999999999998776 33444556678899999999999999999999999
Q ss_pred EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656 118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 197 (685)
Q Consensus 118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 197 (685)
||++.+....... ...+.
T Consensus 123 iy~ls~~d~~g~~--------------------------------------------------------------~v~r~ 140 (343)
T KOG0286|consen 123 IYPLSTRDAEGNV--------------------------------------------------------------RVSRE 140 (343)
T ss_pred EEecccccccccc--------------------------------------------------------------eeeee
Confidence 9998744211110 01111
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeE
Q 005656 198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDI 276 (685)
Q Consensus 198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i 276 (685)
..+|.+.+.|+.|.+ .+.+++|+.|.++.+||+.+|+....|. +|.+.|.+++++| +++.+++|+-|+..
T Consensus 141 l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~--------GH~gDV~slsl~p~~~ntFvSg~cD~~a 211 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH--------GHTGDVMSLSLSPSDGNTFVSGGCDKSA 211 (343)
T ss_pred ecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec--------CCcccEEEEecCCCCCCeEEecccccce
Confidence 228889999999988 6779999999999999999999998886 9999999999999 89999999999999
Q ss_pred EEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEE
Q 005656 277 KVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~spdg~~l~s~ 353 (685)
++||++.+..++++..+ +.|+.+.|.|+|.-+++|++|++.++||++..+.+..+.. ...+|++++||..|++|++|
T Consensus 212 klWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 212 KLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred eeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEee
Confidence 99999999999999876 8899999999999999999999999999999988888863 34579999999999999999
Q ss_pred eCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 354 GMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 354 s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
..|.++.+||.-.++.+..+.+|.. |+++..+|||..+++|+-|. .++||.
T Consensus 292 y~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs-~lriW~ 343 (343)
T KOG0286|consen 292 YDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS-TLRIWA 343 (343)
T ss_pred ecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhH-heeecC
Confidence 9999999999999999999987776 99999999999999999998 999994
No 19
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.5e-37 Score=299.28 Aligned_cols=366 Identities=19% Similarity=0.262 Sum_probs=278.9
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee--cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|+.-|+|+.|+|||. ++||.+.||.|.+||-.+++.+..+. .+|.+.|++++|+||+..++|+|.|.+++|||+.+.
T Consensus 189 HskFV~~VRysPDG~-~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGS-RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred cccceeeEEECCCCC-eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc
Confidence 667799999999999 99999999999999999999988885 479999999999999999999999999999998664
Q ss_pred CC---------------------------------------CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEE
Q 005656 79 DG---------------------------------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119 (685)
Q Consensus 79 ~~---------------------------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vw 119 (685)
.. .+..+..+.||...|+++..+|++++|++|+.||.|.-|
T Consensus 268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 21 123455667999999999999999999999999999999
Q ss_pred EeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656 120 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 199 (685)
Q Consensus 120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 199 (685)
+..++...+.....+. ..+..+... +...+++++.++ .+++.++...........
T Consensus 348 ~~~~g~~~~~~g~~h~----------------nqI~~~~~~-----~~~~~~t~g~Dd-~l~~~~~~~~~~t~~~~~--- 402 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHT----------------NQIKGMAAS-----ESGELFTIGWDD-TLRVISLKDNGYTKSEVV--- 402 (603)
T ss_pred ecCCcccccccccccc----------------ceEEEEeec-----CCCcEEEEecCC-eEEEEecccCccccccee---
Confidence 9988876554432221 111111111 112344444443 344444433222222111
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656 200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 279 (685)
Q Consensus 200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 279 (685)
.......+++..+++..+++.+.++.+.+-+...- ... .-.-...+++++|++..++.|+.||.|++|
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~-~~~-----------~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvy 470 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV-SSI-----------PIGYESSAVAVSPDGSEVAVGGQDGKVHVY 470 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc-eee-----------ccccccceEEEcCCCCEEEEecccceEEEE
Confidence 22344558999999988888887775544433221 111 223456789999999999999999999999
Q ss_pred ECCCCceE---EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEeC
Q 005656 280 DFKGRDLK---SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGM 355 (685)
Q Consensus 280 d~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~ 355 (685)
.+....+. ....+.+++++++|+||+.+||+|...+.+.+||+.+++......+ |+.+|++++|+|+..++||||.
T Consensus 471 sl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl 550 (603)
T KOG0318|consen 471 SLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL 550 (603)
T ss_pred EecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc
Confidence 99876533 4456779999999999999999999999999999999877444444 9999999999999999999999
Q ss_pred CCcEEEEEcCCCceeeEEe--eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 356 DGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 356 Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
|-.|.||++......-.++ +...|+.+.|-.+ ..+++++.|. .|++|+.
T Consensus 551 Dt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da-~iK~W~v 601 (603)
T KOG0318|consen 551 DTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDA-NIKVWNV 601 (603)
T ss_pred cceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcc-eeEEecc
Confidence 9999999998654433332 3334999999654 6788888887 8999974
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-38 Score=319.47 Aligned_cols=389 Identities=19% Similarity=0.301 Sum_probs=293.1
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
..|++++.+||+. +|++++..+.+++|++.+++++...+..|.+||.-++|+|.+.+|++|+.||.+++||+..+
T Consensus 63 d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~---- 137 (775)
T KOG0319|consen 63 DEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG---- 137 (775)
T ss_pred hhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC----
Confidence 3589999999988 99999999999999999999999999559999999999999999999999999999999988
Q ss_pred ceeEecccCCCCCeEEEEecCCC--EEEEEeCCCceEEEEeecCce-eeEechhhHHHHHhhccccc-------------
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKE------------- 146 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~--~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~------------- 146 (685)
.+...++||.+.|.++.|+|+-. .|++|..|+++++||+.+... ...+. .+.... ..+.+..
T Consensus 138 ~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~-~H~S~v-tsL~~~~d~~~~ls~~RDkv 215 (775)
T KOG0319|consen 138 YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMI-LHKSAV-TSLAFSEDSLELLSVGRDKV 215 (775)
T ss_pred EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHH-hhhhhe-eeeeeccCCceEEEeccCcE
Confidence 88899999999999999999744 588999999999999986544 11110 000000 0000000
Q ss_pred ---------cccccCceee-ee-cccccccCC--cceEEEEcCCceEEEEEc----------------------------
Q 005656 147 ---------EELKLKPVIA-FD-CAEIRERDW--CNVVTCHMDTAQAYVWRL---------------------------- 185 (685)
Q Consensus 147 ---------~~~~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~w~~---------------------------- 185 (685)
..++..|... +. ....++... ...+....+++.++.|+.
T Consensus 216 i~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~ 295 (775)
T KOG0319|consen 216 IIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQ 295 (775)
T ss_pred EEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCc
Confidence 0000000000 00 000000000 011222222223333322
Q ss_pred ----------------------------------------------------------CccccCceeecCCCCCCCCeEE
Q 005656 186 ----------------------------------------------------------QNFVLGEHILRPCPENPTAVKA 207 (685)
Q Consensus 186 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~v~~ 207 (685)
...... ...+|...|.+
T Consensus 296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-----ii~GH~e~vlS 370 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-----IIPGHTEAVLS 370 (775)
T ss_pred eEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-----EEeCchhheee
Confidence 211111 12366777888
Q ss_pred EEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCce
Q 005656 208 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDL 286 (685)
Q Consensus 208 ~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~ 286 (685)
+....+|.++++|+.|.++++|.+..+....... ....+|...|.+++++..+ .+|+++|.|+++++|++...+.
T Consensus 371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~----a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV----AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred eeecccCcEEEEecCCceEEEEEecCCcchhhhh----hhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 8877788899999999999999885443322111 1233899999999997665 6899999999999999986221
Q ss_pred E-----E-----EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656 287 K-----S-----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356 (685)
Q Consensus 287 ~-----~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D 356 (685)
. . ...|+..|++++++|+.+++|+|+.|.+.+||+++..+...++.||...|.++.|+|..+.++|+|.|
T Consensus 447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD 526 (775)
T KOG0319|consen 447 TAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGD 526 (775)
T ss_pred ccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCC
Confidence 1 1 12345789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 357 GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 357 g~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
++|+||.+.+..++.+|.+|.. |..+.|-.+|+.|++++.|| -|++|+.+.
T Consensus 527 ~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG-liKlWnikt 578 (775)
T KOG0319|consen 527 KTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG-LIKLWNIKT 578 (775)
T ss_pred ceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC-cEEEEeccc
Confidence 9999999999999999997665 99999999999999999998 999998654
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.4e-38 Score=290.94 Aligned_cols=322 Identities=14% Similarity=0.182 Sum_probs=279.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+++|.+++.+|+.+ ++|||+.|..-.||+..++.....+. +|.+.|+++.|+.+|.+||||+.+|.|+||...++.
T Consensus 63 H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~- 139 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG- 139 (399)
T ss_pred cCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEEcccCc-
Confidence 899999999999776 99999999999999999999888887 999999999999999999999999999999998873
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
....+......+.-+.|+|-+..|+.|+.||.+.+|.+.++...+.+.
T Consensus 140 ---~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~----------------------------- 187 (399)
T KOG0296|consen 140 ---EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS----------------------------- 187 (399)
T ss_pred ---eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----------------------------
Confidence 333443556778889999999999999999999999998765555443
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
+|..++++=.|.|+|+.+++|+.||+|++||+.++......
T Consensus 188 ---------------------------------------Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 188 ---------------------------------------GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKI 228 (399)
T ss_pred ---------------------------------------CCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEe
Confidence 77889999999999999999999999999999999887766
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec---------CCceeE---EEEeecCCEE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---------GCSLVK---IVYHRVNGLL 308 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~i~~---~~~~~~~~~l 308 (685)
.. .......++.++..+..++.|+.++.+++-+..+++.+..... ...+.+ +.++..-.+.
T Consensus 229 ~~-------~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~ 301 (399)
T KOG0296|consen 229 TQ-------AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA 301 (399)
T ss_pred cc-------cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence 42 3345677889999999999999999999999999988876653 133334 4444455689
Q ss_pred EEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCC
Q 005656 309 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN 387 (685)
Q Consensus 309 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spd 387 (685)
|+|+-||+|.|||+...++...+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.+|.. |.+++++|+
T Consensus 302 A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 302 ACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred hcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 999999999999999877655554 889999999988 68999999999999999999999999998776 999999999
Q ss_pred CCeEEEEEeCCCeEEEEEc
Q 005656 388 MDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 388 g~~Lat~~~d~~~I~lW~~ 406 (685)
+++++|++.|. ..+||..
T Consensus 380 ~~~vvT~s~D~-~a~VF~v 397 (399)
T KOG0296|consen 380 KRLVVTVSDDN-TALVFEV 397 (399)
T ss_pred CcEEEEecCCC-eEEEEec
Confidence 99999999886 8899864
No 22
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.7e-37 Score=295.19 Aligned_cols=451 Identities=14% Similarity=0.240 Sum_probs=326.4
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
++|++++|+|...+-+|+.++ -.+.||+..+.....++. .....|.++.|..||++|+.|...|.|+|+|+.+.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---- 100 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---- 100 (487)
T ss_pred CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccH----
Confidence 579999999977655666553 459999999888777776 68899999999999999999999999999996553
Q ss_pred ceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
..++.+.+|..||..+.|+|. +..+++|+.|+.+++||+.+...
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v----------------------------------- 145 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV----------------------------------- 145 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-----------------------------------
Confidence 678889999999999999996 55677888888999999854421
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~ 241 (685)
.+++
T Consensus 146 ------------------------------------------------------------------~~~l---------- 149 (487)
T KOG0310|consen 146 ------------------------------------------------------------------QAEL---------- 149 (487)
T ss_pred ------------------------------------------------------------------EEEe----------
Confidence 1111
Q ss_pred cccccccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCC-ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 242 DMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 242 ~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
.+|+..|+|.+|+|.+. .++|||.||+|++||++.. ..+.+++++.+|..+.+-|.|.++|+++. +.|+|
T Consensus 150 -------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkV 221 (487)
T KOG0310|consen 150 -------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKV 221 (487)
T ss_pred -------cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEE
Confidence 18999999999999764 7899999999999999977 78889999999999999999999998875 58999
Q ss_pred EEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656 320 FDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 320 ~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
||+.+| +.+..+..|...|||+++..++..|++||-|+.|++||+.+.+.+..+..+++|.+++.+|+++.++.|..||
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccc
Confidence 999955 5566666699999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CeEEEEEcCCCcCCCCCCCCCCCCccceeecCCCccCCCCcCCCCCCCCCCcCCCCCCCCCCCCCCcCCCCcCceeecCC
Q 005656 399 NGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLL 478 (685)
Q Consensus 399 ~~I~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 478 (685)
.+.+-. .. .+ .+.. . .
T Consensus 302 -lv~~rr--~~-----------~k-----------------------------~k~s---------~------------~ 317 (487)
T KOG0310|consen 302 -LVSIRR--RE-----------VK-----------------------------KKPS---------K------------E 317 (487)
T ss_pred -eeeeeh--hh-----------cc-----------------------------cCCC---------c------------c
Confidence 443320 00 00 0000 0 0
Q ss_pred cHhHHhhccchHHHHhhcCCCCCCCCCCCCCccccCCCCCCCccccCCCCCccccccc-cccCCCCCCCCCccHHHHHHh
Q 005656 479 PKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTES-LKVGNKTKPDIPVSQFIQLLH 557 (685)
Q Consensus 479 ~~~~~~~~~~l~~i~~r~k~~~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 557 (685)
|+ |. +++..-||...... +.. .+.++- .++.+..++ ..|-+.|.
T Consensus 318 ~~--------------~r-------~~r~~~~~v~~r~~-~~~---------~~~ddiv~n~~~r~~L----~~~Dk~Lk 362 (487)
T KOG0310|consen 318 PK--------------RR-------ADRSDGFFVKVRGQ-NYK---------GQKDDIVVNEVKRLKL----TYFDKRLK 362 (487)
T ss_pred cc--------------cc-------ccccccceEeeecc-ccc---------cccceeEeccccccCC----chHHHHHh
Confidence 00 00 00000111100000 000 000000 001111112 22333332
Q ss_pred hccccCChHHH-HHHHh-cCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 005656 558 SCAEMKNFSAF-TDYIK-SLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFL 635 (685)
Q Consensus 558 ~~~~~~~~~~~-~~~l~-~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l 635 (685)
+= .|.+. ..+|. +..|..+=.-|+-|-. .++-..++.++ +...+..+|.||...|...|-+..+.-|.+.+|
T Consensus 363 ~F----~~kkALd~vl~~~~~pelvvavl~eL~~-Rg~l~~AL~gr-de~eL~~lLnfl~~~l~~~rf~~~L~~~~~~iL 436 (487)
T KOG0310|consen 363 QF----KHKKALDHVLEPKKDPELVVAVLSELVH-RGGLRRALAGR-DESELAPLLNFLVKNLTVVRFASILMEVVSVIL 436 (487)
T ss_pred hh----hHHHHHHHHhcccCChhHHHHHHHHHHH-hhHHHHHhcCc-cHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 21 12222 22223 3333333322222211 11111111111 357799999999999999999999999999999
Q ss_pred HhhccccccchHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhccccC
Q 005656 636 KIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQ 684 (685)
Q Consensus 636 ~~h~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (685)
.+++..|..+|.+...+..|+..++++..-.+++ ....+||+-|..+-
T Consensus 437 d~Y~~~i~~s~~l~k~i~~L~~~V~~Ev~~q~el-lr~~G~ldmL~~~t 484 (487)
T KOG0310|consen 437 DLYARDIEGSPMLAKLIQALRGKVEQEVRVQKEL-LRLIGMLDMLGSIT 484 (487)
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHhh
Confidence 9999999999999999999999999998777666 78889998876554
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.3e-38 Score=296.62 Aligned_cols=281 Identities=21% Similarity=0.386 Sum_probs=245.1
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
-+|..+.|.|+|+ .|+||+..|...+|+..+......++ +|+.+|+++.|++++.+++||+.+|.|++|+.+..
T Consensus 97 c~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---- 170 (464)
T KOG0284|consen 97 CPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---- 170 (464)
T ss_pred cceeeEEEcCCCc-eeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEEecccchh----
Confidence 4799999999999 89999999999999986666555565 99999999999999999999999999999987654
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
........|...|++++|+|+...+++|+.||+|+|||....+....+
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-------------------------------- 218 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-------------------------------- 218 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--------------------------------
Confidence 222233345599999999999999999999999999998544322211
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
T Consensus 219 -------------------------------------------------------------------------------- 218 (464)
T KOG0284|consen 219 -------------------------------------------------------------------------------- 218 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
.+|.-.|.+++|+|....++++|.|..|++||.+++.++.++..+ ..|..+.|+|++++|++++.|..+++||
T Consensus 219 ------~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~D 292 (464)
T KOG0284|consen 219 ------RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFD 292 (464)
T ss_pred ------ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEe
Confidence 189999999999999999999999999999999999999888765 8899999999999999999999999999
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeEEe--eccceEEEEEcCCCCeEEEEEeCC
Q 005656 322 VVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 322 ~~~~~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
+++.+.++++++|...|++++|+| ...+|.+|+.||.|..|.+...+.+..+. +...|++++|+|-|.+|++|+.|.
T Consensus 293 iR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 293 IRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred hhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCc
Confidence 999999999999999999999999 45688899999999999999777766664 344599999999999999999886
Q ss_pred CeEEEEEcCC
Q 005656 399 NGVYLWVNRC 408 (685)
Q Consensus 399 ~~I~lW~~~~ 408 (685)
.+++|....
T Consensus 373 -t~rfw~r~r 381 (464)
T KOG0284|consen 373 -TVRFWTRNR 381 (464)
T ss_pred -ceeeeccCC
Confidence 999997443
No 24
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.7e-37 Score=284.61 Aligned_cols=280 Identities=21% Similarity=0.407 Sum_probs=254.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|-|.|.|+++.|..+ +++||+.|++|.|||+.+|++..++. ||-..|..+++|+..+||++++.|+.|+.||+...
T Consensus 150 HlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n-- 225 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN-- 225 (460)
T ss_pred ccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhh--
Confidence 789999999999877 99999999999999999999999998 99999999999999999999999999999999987
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+.++...||-..|.|++.+|.-..|++|+.|.++|+||+++...+..+.
T Consensus 226 --kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~----------------------------- 274 (460)
T KOG0285|consen 226 --KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS----------------------------- 274 (460)
T ss_pred --hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-----------------------------
Confidence 8889999999999999999999999999999999999997765433331
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
T Consensus 275 -------------------------------------------------------------------------------- 274 (460)
T KOG0285|consen 275 -------------------------------------------------------------------------------- 274 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
+|..+|..+.+.|.+..+++|+.|++|++||+..++...++.++ ..+.+++.+|....+|+++.| .|+-
T Consensus 275 ---------GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~ 344 (460)
T KOG0285|consen 275 ---------GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQ 344 (460)
T ss_pred ---------CCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-ccee
Confidence 89999999999998888999999999999999999887777665 789999999999999999887 5899
Q ss_pred EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe---------eccceEEEEEcCCCCe
Q 005656 320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH---------VDVSITALSLSPNMDV 390 (685)
Q Consensus 320 ~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~---------~~~~v~~v~~spdg~~ 390 (685)
|++..|..+..+.+|+..|++++...|| ++++|++.|.+.+||.++|...+... ....|.+.+|...|..
T Consensus 345 w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~r 423 (460)
T KOG0285|consen 345 WKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSR 423 (460)
T ss_pred ccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCce
Confidence 9999999999999999999999999887 78999999999999999987655442 2345899999999999
Q ss_pred EEEEEeCCCeEEEEEcC
Q 005656 391 LATAHVDQNGVYLWVNR 407 (685)
Q Consensus 391 Lat~~~d~~~I~lW~~~ 407 (685)
|+++..|. +|++|.-.
T Consensus 424 lit~eadK-tIk~~keD 439 (460)
T KOG0285|consen 424 LITGEADK-TIKMYKED 439 (460)
T ss_pred EEeccCCc-ceEEEecc
Confidence 99999997 99999643
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=268.05 Aligned_cols=269 Identities=20% Similarity=0.289 Sum_probs=234.8
Q ss_pred cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHH
Q 005656 59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 138 (685)
Q Consensus 59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 138 (685)
-+|+|+|.|.+||+|...++ ++.+++......|+.+...|+++.|++++. ..||+||+.++......
T Consensus 11 viLvsA~YDhTIRfWqa~tG----~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~-------- 77 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG----ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVA-------- 77 (311)
T ss_pred eEEEeccCcceeeeeehhcC----eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCcee--------
Confidence 38999999999999998888 889998888899999999999999988874 57999999877542111
Q ss_pred HhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEE
Q 005656 139 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV 218 (685)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 218 (685)
...++...|+++.|..+|++++
T Consensus 78 ----------------------------------------------------------t~e~h~kNVtaVgF~~dgrWMy 99 (311)
T KOG0315|consen 78 ----------------------------------------------------------TFEGHTKNVTAVGFQCDGRWMY 99 (311)
T ss_pred ----------------------------------------------------------EEeccCCceEEEEEeecCeEEE
Confidence 1116778999999999999999
Q ss_pred EEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec--CCce
Q 005656 219 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSL 296 (685)
Q Consensus 219 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i 296 (685)
+|++||.+++||+++....+.+ .|..+|+++..+|+...|++|..+|.|++||+........+.. ..++
T Consensus 100 TgseDgt~kIWdlR~~~~qR~~---------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i 170 (311)
T KOG0315|consen 100 TGSEDGTVKIWDLRSLSCQRNY---------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSI 170 (311)
T ss_pred ecCCCceEEEEeccCcccchhc---------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcce
Confidence 9999999999999997666655 7889999999999999999999999999999998766665544 3789
Q ss_pred eEEEEeecCCEEEEEeCCCeEEEEEcCCC------eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-ce
Q 005656 297 VKIVYHRVNGLLATVADDLVIRLFDVVAL------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA-RQ 369 (685)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~-~~ 369 (685)
.++...|||.+++.+...|..++|++-+. +++.+++.|++.|..+.+|||+++||++|.|.+++||+..+. +.
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kl 250 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKL 250 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceee
Confidence 99999999999999999999999998764 567778899999999999999999999999999999999987 44
Q ss_pred eeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 370 IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 370 i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
-..+.++.. ++.++||.||.||+||+.|. .+++|+...
T Consensus 251 e~~l~gh~rWvWdc~FS~dg~YlvTassd~-~~rlW~~~~ 289 (311)
T KOG0315|consen 251 ELVLTGHQRWVWDCAFSADGEYLVTASSDH-TARLWDLSA 289 (311)
T ss_pred EEEeecCCceEEeeeeccCccEEEecCCCC-ceeeccccc
Confidence 455666655 99999999999999999996 999998543
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=275.97 Aligned_cols=280 Identities=18% Similarity=0.345 Sum_probs=247.9
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 79 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~ 79 (685)
|+|.|..+.|+|+|. ++|||+.|..|.+|++.. -+....++ +|.++|..+.|.+|++.++++|.|.+|+.||+.++
T Consensus 46 h~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG- 122 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG- 122 (338)
T ss_pred CcceEEEEEECCCCC-eEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEEecccc-
Confidence 789999999999999 999999999999999654 45566777 99999999999999999999999999999999998
Q ss_pred CCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 80 GDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
+..+..++|..-|+++.-+.-|. .+.+++.||++++||+++....+.+
T Consensus 123 ---~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~---------------------------- 171 (338)
T KOG0265|consen 123 ---KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF---------------------------- 171 (338)
T ss_pred ---eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc----------------------------
Confidence 77788889999999988544454 5668889999999999877655544
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
..+..+++++|...+..+.+|+-|+.|++||++.+....
T Consensus 172 -----------------------------------------~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~ 210 (338)
T KOG0265|consen 172 -----------------------------------------ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY 210 (338)
T ss_pred -----------------------------------------ccceeEEEEEecccccceeeccccCceeeeccccCcceE
Confidence 346779999999999999999999999999999888877
Q ss_pred ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC----CceEEEeecC-----CceeEEEEeecCCEEE
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG----RDLKSRWEVG-----CSLVKIVYHRVNGLLA 309 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~-----~~i~~~~~~~~~~~l~ 309 (685)
.+. +|...|+++..+++|.++.+-+.|.++++||++- .+++..+..+ .....++|+|+++.+.
T Consensus 211 ~ls--------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 211 TLS--------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred Eee--------cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence 765 9999999999999999999999999999999974 3335555433 4567899999999999
Q ss_pred EEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 310 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
.|+.|..+++||..+...+..+.||.+.|++++|+|...+|.+++.|.+|++=+
T Consensus 283 ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 283 AGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999999999999999999999999999999999999999998743
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=266.28 Aligned_cols=284 Identities=19% Similarity=0.337 Sum_probs=238.3
Q ss_pred CCCcEEEEEEccC-CCCEEEEEeCCCcEEEEeCCC---CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656 1 MRGAVTALAFSSD-GQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspd-g~~~latg~~dg~I~vwd~~~---~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~ 76 (685)
|++.|..++|+|- |. +||+++.|..|++|+..+ -.+...+..+|+..|++++|+|.|++|+++|.|.++.|| .
T Consensus 13 h~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw--~ 89 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW--K 89 (312)
T ss_pred CCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe--e
Confidence 7889999999998 87 999999999999999984 567777777999999999999999999999999999999 4
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 156 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
..++.++++..+.||...|.|++|+++|++|++|++|..|.+|.+..+......
T Consensus 90 k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~-------------------------- 143 (312)
T KOG0645|consen 90 KEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI-------------------------- 143 (312)
T ss_pred cCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE--------------------------
Confidence 456778899999999999999999999999999999999999998754432221
Q ss_pred eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC-C-
Q 005656 157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS-G- 234 (685)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~-~- 234 (685)
.....|...|..+.|+|....|++++.|.+|++|.-.. +
T Consensus 144 ---------------------------------------aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd 184 (312)
T KOG0645|consen 144 ---------------------------------------AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD 184 (312)
T ss_pred ---------------------------------------eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCC
Confidence 11227888999999999999999999999999998763 2
Q ss_pred -ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC
Q 005656 235 -ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD 313 (685)
Q Consensus 235 -~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 313 (685)
....++. +|...|.+++|++.|..+++++.|++++||...+.- ...+...+..+.|. ...|++++.
T Consensus 185 W~c~~tl~--------g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~gg 251 (312)
T KOG0645|consen 185 WECVQTLD--------GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIASGGG 251 (312)
T ss_pred eeEEEEec--------CccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec--ccceEeccC
Confidence 2334443 899999999999999999999999999999865221 12234678888888 679999999
Q ss_pred CCeEEEEEcCCC------eeEE-EEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcC
Q 005656 314 DLVIRLFDVVAL------RMVR-KFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 314 dg~I~i~d~~~~------~~~~-~~~~h~~~I~~l~~spd-g~~l~s~s~Dg~I~iwd~~ 365 (685)
|+.|++|..... +.+. .-..|...|++++|.|. ...|++|+.||.|++|.+.
T Consensus 252 D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 252 DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999999976642 1111 22468889999999995 6789999999999999874
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.8e-37 Score=312.53 Aligned_cols=270 Identities=21% Similarity=0.352 Sum_probs=234.4
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~ 83 (685)
.++|..|++|+. +||.|..|..|++|.+...++. .++ +... ...+=+.+.|-.+.+-|-+.. .
T Consensus 380 ~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~-~lk--~~~~---------l~~~d~~sad~~~~~~D~~~~----~ 442 (707)
T KOG0263|consen 380 GVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLK-KLK--DASD---------LSNIDTESADVDVDMLDDDSS----G 442 (707)
T ss_pred cceeEeecCCcc-hhhccccccEEEEEecchhhhc-ccc--chhh---------hccccccccchhhhhccccCC----c
Confidence 589999999999 9999999999999998765332 222 1111 112234445555666655544 3
Q ss_pred eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
..+.+.||.+||..+.|+|+.++|++++.|+++|+|++.+..+...+.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-------------------------------- 490 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-------------------------------- 490 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec--------------------------------
Confidence 445578999999999999999999999999999999998877655543
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
+|..+|..+.|+|.|-|+++++.|++.++|........+.+.
T Consensus 491 ------------------------------------GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-- 532 (707)
T KOG0263|consen 491 ------------------------------------GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-- 532 (707)
T ss_pred ------------------------------------CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc--
Confidence 788999999999999999999999999999998877776665
Q ss_pred cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDV 322 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~ 322 (685)
+|.+.|.|+.|+|+..++++||.|.+|++||+.+|..++.+.+| ++|.+++|+|+|++|++|+.||.|.+||+
T Consensus 533 ------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 533 ------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred ------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 99999999999999999999999999999999999999998876 99999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 323 ~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
.+++.+..+.+|++.|+++.||.||..||+||.|.+|++||+..
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999999999999999999999999864
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-35 Score=282.20 Aligned_cols=278 Identities=22% Similarity=0.367 Sum_probs=250.3
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
..||+++|+.+|. +||+|+.||.++||+.. |.++.++. .|.++|.++.|+..|.+|++++.|+++.+||..++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~-G~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g---- 308 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKD-GNLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG---- 308 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecC-chhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc----
Confidence 4699999999999 99999999999999964 56666776 89999999999999999999999999999998777
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
.....+.-|..+-..+.|-.+. .+++++.||.|+|+.+.......++.
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~------------------------------- 356 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFI------------------------------- 356 (524)
T ss_pred eEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeee-------------------------------
Confidence 6666677788887889997654 68999999999999998776666553
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
+|.+.|.++.|.|.|..|++++.|+++++|++........+.
T Consensus 357 -------------------------------------GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~- 398 (524)
T KOG0273|consen 357 -------------------------------------GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ- 398 (524)
T ss_pred -------------------------------------cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-
Confidence 789999999999999999999999999999998887777665
Q ss_pred ccccccCCCCcCEEEEEEcCCC---------CEEEEEECCCeEEEEECCCCceEEEe-ecCCceeEEEEeecCCEEEEEe
Q 005656 243 MSERSNYAHNGEVVGVACDSTN---------TLMISAGYHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVA 312 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~---------~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 312 (685)
+|...|..+.|+|.| ..+++++.|++|++||+..+.++..+ .+..+|.+++|+|+|+++|+|+
T Consensus 399 -------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 399 -------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred -------hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 999999999999965 47899999999999999999999998 5669999999999999999999
Q ss_pred CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 313 ~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
.||.|.||++++++.++...+ ++.|..++|+.+|..|..+-.||.+++.|++
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999885 4569999999999999999999999999875
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.8e-35 Score=275.41 Aligned_cols=291 Identities=21% Similarity=0.308 Sum_probs=256.0
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+..|+|+.||.||. +||||+-+|.|.||...++.....+. .--..|.-+.|+|.+..|+.|+.||.+.+|.+..+
T Consensus 105 HKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-- 180 (399)
T KOG0296|consen 105 HKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-- 180 (399)
T ss_pred CCCceEEEEEccCce-EEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc--
Confidence 889999999999999 99999999999999999999888886 56678999999999999999999999999999876
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
...+.+.||..++++-.|.|+|+.++++..||+|++|+..+++....+.+
T Consensus 181 --~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~---------------------------- 230 (399)
T KOG0296|consen 181 --ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQ---------------------------- 230 (399)
T ss_pred --ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecc----------------------------
Confidence 56777889999999999999999999999999999999999987766642
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
.......++.++..+..++.|..+|.+++.+..+|+.+...
T Consensus 231 ---------------------------------------~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 231 ---------------------------------------AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred ---------------------------------------cccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 12345667888888899999999999999998888887666
Q ss_pred ccccccccCCCCcCEEEEEEcCC---CCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeE
Q 005656 241 LDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
..........+...+.++.+.|. =.+.++|+.||+|.|||+...++.....+..+|+.+.|-+ ..+|++++.+|.|
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v 350 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKV 350 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceE
Confidence 53222233356666666665554 4567899999999999999999999999999999999998 7899999999999
Q ss_pred EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
+.||.++|+++.++.||...|.+++++|+.++++|+|.|++.+||+++
T Consensus 351 ~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 351 RQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999999999999999999999875
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1e-34 Score=291.45 Aligned_cols=281 Identities=29% Similarity=0.512 Sum_probs=252.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+++|++++|+|+++ ++++|+.+|.|.+|++.+++....+. .|...+..+.|+|+++.+++++.||.|++|++...
T Consensus 8 h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-- 83 (289)
T cd00200 8 HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-- 83 (289)
T ss_pred cCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--
Confidence 789999999999998 99999999999999999988877777 89999999999999999999999999999999875
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+....+..|...+.++.|+++++++++++.||.+++|++.+.+....+.
T Consensus 84 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------------------- 132 (289)
T cd00200 84 --ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR----------------------------- 132 (289)
T ss_pred --cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-----------------------------
Confidence 4556667889999999999998888888889999999997655443331
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
.+...+.+++++|++.++++++.+|.|++||+.++.....+
T Consensus 133 ---------------------------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 173 (289)
T cd00200 133 ---------------------------------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173 (289)
T ss_pred ---------------------------------------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence 45667999999999999999988999999999988776665
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe-ecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
. .|...+.++.|+|+++.+++++.||.|++||+.+++....+ .+...+.++.|+|++.++++++.|+.|++
T Consensus 174 ~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i 245 (289)
T cd00200 174 T--------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245 (289)
T ss_pred e--------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEE
Confidence 4 78889999999999999999999999999999998888888 45579999999999888888888999999
Q ss_pred EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 320 ~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
||+.+++....+.+|...|.+++|+|++++|++++.||.|++|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 246 WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999999999999999999999999999996
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.4e-37 Score=294.31 Aligned_cols=288 Identities=20% Similarity=0.332 Sum_probs=254.6
Q ss_pred eeeEEeecccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 36 RLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 36 ~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
+.+..+. +|+..|+++.|.| .+.+|++++.|+.|+||++-... ++++++.||..+|..++|+++|..++|+|.|+
T Consensus 205 k~~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~---~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 205 KLSHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR---RCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred hheeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecCc---ceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 4456666 9999999999999 88899999999999999987632 89999999999999999999999999999999
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
.|++||+++|++...+.
T Consensus 281 ~lKlwDtETG~~~~~f~--------------------------------------------------------------- 297 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFH--------------------------------------------------------------- 297 (503)
T ss_pred eeeeeccccceEEEEEe---------------------------------------------------------------
Confidence 99999999999887763
Q ss_pred ecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC
Q 005656 195 LRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 273 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 273 (685)
....+.|+.++|++ +.+++|+.|+.|+.||+++++.+..+. .|-+.|..+.|-++|+++++++.|
T Consensus 298 ------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 298 ------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------RHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred ------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--------hhhhheeeeEEccCCceEeeeccC
Confidence 35567899999998 899999999999999999999998886 899999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC---eeEEEEecCC--CCeEEEEEcCC
Q 005656 274 GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---RMVRKFEGHT--DRITDFCFSED 346 (685)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~--~~I~~l~~spd 346 (685)
++++||+.+....+..+... ....++..+|+++++++-+.|+.|.+|.+... ..-..|+||. +.-..+.||||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 99999999987766544433 56778999999999999999999999987543 2344677885 44667899999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeEEeec-cceEEEEEcCCC-CeEEEEEeCCCeEEEEE
Q 005656 347 GKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNM-DVLATAHVDQNGVYLWV 405 (685)
Q Consensus 347 g~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg-~~Lat~~~d~~~I~lW~ 405 (685)
|++|++|+.||.+.+||..+-+++..+..+ .++..+.|+|-. ..+|+++.|| .|++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G-~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG-LIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc-eeEecC
Confidence 999999999999999999999999999887 559999999964 5789999897 999995
No 33
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-36 Score=282.64 Aligned_cols=291 Identities=21% Similarity=0.324 Sum_probs=251.3
Q ss_pred EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEE
Q 005656 39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118 (685)
Q Consensus 39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~v 118 (685)
+.+. .|.+.|.-+.||++|++|||++.|.+..+|++.... ..++..++.+|..+|..+.|+||.++|++|+.|..+++
T Consensus 218 qil~-~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~-~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQ-DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV-HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhHh-hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc-ceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 3444 899999999999999999999999999999987653 36788899999999999999999999999999999999
Q ss_pred EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656 119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 198 (685)
Q Consensus 119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 198 (685)
||+.++.....+..
T Consensus 296 wDv~tgd~~~~y~~------------------------------------------------------------------ 309 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPS------------------------------------------------------------------ 309 (519)
T ss_pred ccCCcchhhhhccc------------------------------------------------------------------
Confidence 99999876655532
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656 199 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 278 (685)
Q Consensus 199 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 278 (685)
++...+.+++|.|||..+++|+.|+.+..||+..... ..... .....|.+++..+||+++++.+.|..|++
T Consensus 310 -~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~g-------vr~~~v~dlait~Dgk~vl~v~~d~~i~l 380 (519)
T KOG0293|consen 310 -GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEG-------VRDPKVHDLAITYDGKYVLLVTVDKKIRL 380 (519)
T ss_pred -CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccc-------cccceeEEEEEcCCCcEEEEEecccceee
Confidence 3356789999999999999999999999999976542 22211 23356999999999999999999999999
Q ss_pred EECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC--eEEEEEcC-CCCEEEEEeC
Q 005656 279 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSE-DGKWLLSSGM 355 (685)
Q Consensus 279 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~--I~~l~~sp-dg~~l~s~s~ 355 (685)
++..+......+..+.+|++++.+.+++++.+.-.+..|++||++..+.++.+.||... |..-||-. +..++++||+
T Consensus 381 ~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 381 YNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred echhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 99998777767777899999999999999999999999999999999999999999764 44446654 5579999999
Q ss_pred CCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCC-eEEEEEeCCCeEEEEEcC
Q 005656 356 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMD-VLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 356 Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~-~Lat~~~d~~~I~lW~~~ 407 (685)
|+.|+||+..+|+++..+.+|.. |++|+|+|... ++|+|+.|| +|+||.+.
T Consensus 461 D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg-tIRIWg~~ 513 (519)
T KOG0293|consen 461 DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG-TIRIWGPS 513 (519)
T ss_pred CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC-eEEEecCC
Confidence 99999999999999999998887 99999999765 667777665 99999754
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-36 Score=281.51 Aligned_cols=284 Identities=17% Similarity=0.322 Sum_probs=239.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC---eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 77 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~ 77 (685)
|++.|.-+.||++|+ +||+|+.|.+..+|++... ++.+++. +|..+|..+.||||.++|++++.|..+++||+++
T Consensus 223 htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 788999999999999 9999999999999987543 4577777 9999999999999999999999999999999998
Q ss_pred CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 78 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
++. ......+|...+.+++|.|||..+++|+.|+++..||+.....
T Consensus 301 gd~---~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~------------------------------- 346 (519)
T KOG0293|consen 301 GDL---RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL------------------------------- 346 (519)
T ss_pred chh---hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-------------------------------
Confidence 852 2222345678999999999999999999999999999864421
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
.-|.. .....|.++++++||+++++.+.|..|++|+..+...+
T Consensus 347 -----------------------~~W~g--------------vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 347 -----------------------GNWEG--------------VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred -----------------------hcccc--------------cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 01110 11345899999999999999999999999999887776
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEee-cCCEEEEEeC
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR-VNGLLATVAD 313 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~-~~~~l~~~~~ 313 (685)
... ....+|++++.+.+++++++.-.+..+++||+...++++.+.++ .-+..-+|-- +..++++|+.
T Consensus 390 ~li---------se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 390 GLI---------SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred ccc---------cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 544 55678999999999999999999999999999988877776654 2334444443 4469999999
Q ss_pred CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 005656 314 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spd-g~~l~s~s~Dg~I~iwd~~~ 366 (685)
|+.|+||+..+++++..+.||...|++++|+|. -..+|+||.||+||||....
T Consensus 461 D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 461 DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999999999999999999999994 46889999999999998653
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6e-36 Score=305.63 Aligned_cols=203 Identities=23% Similarity=0.342 Sum_probs=192.9
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656 200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 279 (685)
Q Consensus 200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 279 (685)
+|.++|..+.|+|+.++|++++.|+++++|.+.+......+. +|..+|+.+.|+|.|-+++|+|.|++-++|
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~--------GH~~PVwdV~F~P~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK--------GHLAPVWDVQFAPRGYYFATASHDQTARLW 520 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec--------CCCcceeeEEecCCceEEEecCCCceeeee
Confidence 899999999999999999999999999999999998888775 999999999999999999999999999999
Q ss_pred ECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656 280 DFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS 358 (685)
Q Consensus 280 d~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~ 358 (685)
......+.+.+..+ +.+.|+.|+|++.++++|+.|.+|++||+.+|..++.|.||.++|++++|||+|++|++|+.||.
T Consensus 521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred ecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence 99999998888877 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcC
Q 005656 359 LRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS 411 (685)
Q Consensus 359 I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~ 411 (685)
|.+||+.+|+++..+..|.. |.++.||.||..||+++.|. .|++||....+.
T Consensus 601 I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn-sV~lWD~~~~~~ 653 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN-SVRLWDLTKVIE 653 (707)
T ss_pred EEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC-eEEEEEchhhcc
Confidence 99999999999999887765 99999999999999999995 999999765543
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.8e-35 Score=307.12 Aligned_cols=284 Identities=23% Similarity=0.404 Sum_probs=252.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|...|+++.|+++|+ .+++++.++.+++|+..+.+ ....+. +|...|.+++|+|++.++++++.|++|++||+...
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 356899999999999 79999999999999998777 677775 99999999999999999999999999999999322
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
. ..++.+.+|...|++++|+|+|+.+++|+.|++|++||+.++++...+.
T Consensus 236 ~---~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--------------------------- 285 (456)
T KOG0266|consen 236 G---RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK--------------------------- 285 (456)
T ss_pred C---eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------------------
Confidence 1 7888999999999999999999999999999999999999988777664
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc--
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-- 236 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~-- 236 (685)
.|...|++++|+++|+++++++.||.|++||+.++..
T Consensus 286 -----------------------------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~ 324 (456)
T KOG0266|consen 286 -----------------------------------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC 324 (456)
T ss_pred -----------------------------------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee
Confidence 7788999999999999999999999999999999984
Q ss_pred ccccccccccccCCCCc--CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-C---ceeEEEEeecCCEEEE
Q 005656 237 RGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-C---SLVKIVYHRVNGLLAT 310 (685)
Q Consensus 237 ~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~---~i~~~~~~~~~~~l~~ 310 (685)
...+. .+.. .++++.|+|++.++++++.|+.+++||+..+.....+..+ . .+.+...++.+.++++
T Consensus 325 ~~~~~--------~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 325 LKLLS--------GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred eeccc--------CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEE
Confidence 33332 3333 6999999999999999999999999999998888777655 2 3445566788999999
Q ss_pred EeCCCeEEEEEcCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 005656 311 VADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG--MDGSLRIWDVI 365 (685)
Q Consensus 311 ~~~dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s--~Dg~I~iwd~~ 365 (685)
|+.|+.|++||+.++..+..+.+| ...+..+.++|...++++++ .|+.+++|...
T Consensus 397 g~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999999999999999 89999999999999999998 78999999754
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=262.99 Aligned_cols=280 Identities=20% Similarity=0.372 Sum_probs=246.4
Q ss_pred cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656 43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122 (685)
Q Consensus 43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~ 122 (685)
.+|.+.|+.+.|+|+|.+||||+.|..|.+|++.... +-...+++|++.|..+.|.+|+..++++|.|.+++.||++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc---cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 3999999999999999999999999999999875432 4456667999999999999999999999999999999999
Q ss_pred cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656 123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 202 (685)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 202 (685)
+++..+... .|.
T Consensus 121 tG~~~rk~k--------------------------------------------------------------------~h~ 132 (338)
T KOG0265|consen 121 TGKRIRKHK--------------------------------------------------------------------GHT 132 (338)
T ss_pred cceeeehhc--------------------------------------------------------------------ccc
Confidence 998776653 566
Q ss_pred CCeEEEEEccCCC-EEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 203 TAVKACTISACGN-FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 203 ~~v~~~~~s~~g~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
..+.+++.+.-|. .+.+|+.||++++||+++......+ ...-.++++.|...+..+++|+-|+.|++||+
T Consensus 133 ~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~---------~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 133 SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF---------ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred ceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc---------ccceeEEEEEecccccceeeccccCceeeecc
Confidence 7777777555554 4567888999999999998888776 45678999999999999999999999999999
Q ss_pred CCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCC----CeeEEEEecCCC----CeEEEEEcCCCCEEEE
Q 005656 282 KGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA----LRMVRKFEGHTD----RITDFCFSEDGKWLLS 352 (685)
Q Consensus 282 ~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~----~~~~~~~~~h~~----~I~~l~~spdg~~l~s 352 (685)
+.......+..+ .+|+.+..+|+|.++.+-+.|.++++||++- .+++..+.+|.. ....++|||+++.+.+
T Consensus 204 r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~a 283 (338)
T KOG0265|consen 204 RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITA 283 (338)
T ss_pred ccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccc
Confidence 999988888876 8999999999999999999999999999974 366888887654 3457899999999999
Q ss_pred EeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEE
Q 005656 353 SGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYL 403 (685)
Q Consensus 353 ~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~l 403 (685)
|+.|..+++||..+...+..+.+|.. |.++.|+|...+|.+++.|. +|++
T Consensus 284 gs~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk-~i~l 334 (338)
T KOG0265|consen 284 GSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK-TIYL 334 (338)
T ss_pred ccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc-eeEe
Confidence 99999999999999889888888776 99999999999999999997 7876
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.6e-34 Score=286.05 Aligned_cols=285 Identities=23% Similarity=0.413 Sum_probs=251.9
Q ss_pred EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEE
Q 005656 39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118 (685)
Q Consensus 39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~v 118 (685)
..+. +|.++|++++|+|++++|++++.||.+++|++... .......+|...+..+.|+|+++++++++.||.|++
T Consensus 3 ~~~~-~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 3 RTLK-GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred hHhc-ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 3455 89999999999999999999999999999999876 456666789999999999999999999999999999
Q ss_pred EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656 119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 198 (685)
Q Consensus 119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 198 (685)
|++.+++....+.
T Consensus 78 ~~~~~~~~~~~~~------------------------------------------------------------------- 90 (289)
T cd00200 78 WDLETGECVRTLT------------------------------------------------------------------- 90 (289)
T ss_pred EEcCcccceEEEe-------------------------------------------------------------------
Confidence 9997654333331
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656 199 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 278 (685)
Q Consensus 199 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 278 (685)
.+...+.++.++++++++++++.+|.+.+||+.++.....+. .|...+.+++|+|++.++++++.||.|++
T Consensus 91 -~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 91 -GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--------GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred -ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--------cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 445679999999999999988889999999999877666553 78889999999999998888888999999
Q ss_pred EECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656 279 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 279 wd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg 357 (685)
||+++++....+..+ ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..|...|.+++|+|++.++++++.||
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 999988887777655 5899999999999999999999999999999999999988999999999999998999988899
Q ss_pred cEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 358 SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 358 ~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
.|++|++.+++.+..+..+. .+.+++|+|++.+|++++.|+ .|++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG-TIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC-eEEecC
Confidence 99999999998888887554 499999999999999999987 999995
No 39
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2e-34 Score=269.72 Aligned_cols=307 Identities=21% Similarity=0.346 Sum_probs=245.0
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc---EEEEecCCCcEEEEEecC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDT 77 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~---~l~s~s~D~~v~iWd~~~ 77 (685)
|.+.|.++... ++ .+.+|++||.+++||.. |+...++. ||.++|.+++|.-... .++++|.|.++++|.++.
T Consensus 104 hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 56777788777 45 89999999999999974 66677777 9999999998865443 599999999999999998
Q ss_pred CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 78 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
+......+....||...|-+++..++|..+++|+.|.+|++|+...... ..+.......+.+....
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~------------- 244 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKRE------------- 244 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccchhhhhhhhhh-------------
Confidence 8776667777779999999999999999999999999999999433221 11110000000000000
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
.. ...+.+.
T Consensus 245 ---------------------------------------~~--------------------------------~~~r~P~ 253 (423)
T KOG0313|consen 245 ---------------------------------------KE--------------------------------GGTRTPL 253 (423)
T ss_pred ---------------------------------------hc--------------------------------ccccCce
Confidence 00 0001111
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
. ...+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+..+..+.++.++|..++|++|+.|..|
T Consensus 254 v--------tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 254 V--------TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHI 324 (423)
T ss_pred E--------EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCce
Confidence 1 1229999999999988 678999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC---eeEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCc-eeeEEeeccc-eEEEEEcCCCCeE
Q 005656 318 RLFDVVAL---RMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILAR-QIDAIHVDVS-ITALSLSPNMDVL 391 (685)
Q Consensus 318 ~i~d~~~~---~~~~~~~~h~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~~-~i~~~~~~~~-v~~v~~spdg~~L 391 (685)
++||.+++ -...+|.||.+.|.++.|+|... .|++|+.|+++++||+++.+ ++..+..|.. |.++.|+ ++.++
T Consensus 325 rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~I 403 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLI 403 (423)
T ss_pred eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceE
Confidence 99999876 34668899999999999999654 67899999999999999877 8888876665 9999996 46789
Q ss_pred EEEEeCCCeEEEEEcCC
Q 005656 392 ATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 392 at~~~d~~~I~lW~~~~ 408 (685)
++|+.|. .|+++.-..
T Consensus 404 vSGGaD~-~l~i~~~~~ 419 (423)
T KOG0313|consen 404 VSGGADN-KLRIFKGSP 419 (423)
T ss_pred EeccCcc-eEEEecccc
Confidence 9999996 999986544
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=283.45 Aligned_cols=370 Identities=15% Similarity=0.226 Sum_probs=304.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|++.|+..-|..+.+ ++++.+.|+.|++||+++..+..+.- .|.+.|.++++.+ +.+++++.|+.+++|++.....
T Consensus 148 Hkd~iT~~~F~~~~~-~lvS~sKDs~iK~WdL~tqhCf~Thv-d~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 148 HKDSITQALFLNGDS-FLVSVSKDSMIKFWDLETQHCFETHV-DHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred chHHHhHHhccCCCe-EEEEeccCceEEEEecccceeeeEEe-cccceEEEEEEec--ceEEEEecCCceEEEEeecccc
Confidence 777888888888666 99999999999999999999999987 9999999999997 7899999999999998821100
Q ss_pred --------------------------------------------------------------------------------
Q 005656 81 -------------------------------------------------------------------------------- 80 (685)
Q Consensus 81 -------------------------------------------------------------------------------- 80 (685)
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v 303 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV 303 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence
Q ss_pred -------------------------------C-----------------------Cce----eEecccCCCCCeEEEEec
Q 005656 81 -------------------------------D-----------------------PRL----LRFRSGHSAPPLCIRFYA 102 (685)
Q Consensus 81 -------------------------------~-----------------------~~~----~~~~~~h~~~v~~i~~~~ 102 (685)
. +++ -..+.||...|.+++++.
T Consensus 304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~ 383 (888)
T KOG0306|consen 304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS 383 (888)
T ss_pred hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence 0 000 012347888999999998
Q ss_pred CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEE
Q 005656 103 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 182 (685)
Q Consensus 103 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (685)
+...++||+ .+.+++|+..+.++.+++..... ....--.|+..+..+...+.+.+
T Consensus 384 d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~------------------------l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 384 DSILLASGA-GESIKIWNRDTLKCIRTITCGYI------------------------LASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred CceeeeecC-CCcEEEEEccCcceeEEeccccE------------------------EEEEecCCCceEEEeccCCceEE
Confidence 876666654 67899999999999888864311 01111246778888889999999
Q ss_pred EEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc-----cccccccccccccCCCCcCEEE
Q 005656 183 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-----SRGSYLDMSERSNYAHNGEVVG 257 (685)
Q Consensus 183 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~-----~~~~~~~~~~~~~~~h~~~v~~ 257 (685)
+++....+-+. .+.|.+.+.+++.+|++..+++|+.|.+|++||..--. ....+ .........-...|.|
T Consensus 439 fdlaS~~l~Et----i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~l-sl~~~rtLel~ddvL~ 513 (888)
T KOG0306|consen 439 FDLASASLVET----IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVL-SLKHTRTLELEDDVLC 513 (888)
T ss_pred EEeehhhhhhh----hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceee-eeccceEEeccccEEE
Confidence 99887655443 34789999999999999999999999999999874211 11111 1111111244578999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC
Q 005656 258 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD 336 (685)
Q Consensus 258 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 336 (685)
+.++|++++++.+-.|.+|++|-+++.+....+- |.-||.|+..+||++++++|+.|.+|+||-++-|.+-+.+-+|..
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 9999999999999999999999999988766554 458999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
.|.++.|-|+...+.++|.|+.|+-||-...+.++.+..|.. |+|++.+|+|.++++++.|. .|++|.
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~-sIRlwE 662 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK-SIRLWE 662 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCc-eeEeee
Confidence 999999999999999999999999999999999999986655 99999999999999999997 999996
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=296.95 Aligned_cols=289 Identities=22% Similarity=0.416 Sum_probs=252.8
Q ss_pred EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEE
Q 005656 39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118 (685)
Q Consensus 39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~v 118 (685)
..+...|...|.++.|+++|+.+++++.|+.+++|+...... ...+.+.+|...|.+++|+|+++++++++.|++|++
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 334324578999999999999999999999999999855421 356666899999999999999999999999999999
Q ss_pred EEee-cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656 119 FSVI-QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 197 (685)
Q Consensus 119 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 197 (685)
||+. .+...+.+.
T Consensus 230 wd~~~~~~~~~~l~------------------------------------------------------------------ 243 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLK------------------------------------------------------------------ 243 (456)
T ss_pred eeccCCCeEEEEec------------------------------------------------------------------
Confidence 9993 335555543
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656 198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 277 (685)
Q Consensus 198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~ 277 (685)
+|...|++++|+|+|+.+++|+.|+.|++||+.+++....+. +|.+.|++++|+++++++++++.||.|+
T Consensus 244 --gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--------~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 244 --GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK--------GHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred --CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee--------ccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 889999999999999999999999999999999998888876 9999999999999999999999999999
Q ss_pred EEECCCCc--eEEEeecC--C-ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC---eEEEEEcCCCCE
Q 005656 278 VWDFKGRD--LKSRWEVG--C-SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR---ITDFCFSEDGKW 349 (685)
Q Consensus 278 iwd~~~~~--~~~~~~~~--~-~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~---I~~l~~spdg~~ 349 (685)
+||+.++. +...+... . +++++.|+|++.++++++.|+.+++||+..+..+..+.+|... +.+...++.+++
T Consensus 314 vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 314 VWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred EEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 99999998 34444433 3 6899999999999999999999999999999999999999885 344456789999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEE--eCCCeEEEEEc
Q 005656 350 LLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAH--VDQNGVYLWVN 406 (685)
Q Consensus 350 l~s~s~Dg~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~--~d~~~I~lW~~ 406 (685)
+++|+.|+.|++|++.++..+..+..+ ..+..++++|...++++++ .|+ .|++|..
T Consensus 394 i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~-~~~~w~~ 453 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG-LIRLWKY 453 (456)
T ss_pred EEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCc-eEEEecC
Confidence 999999999999999999999888877 4489999999999999998 565 8999964
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.3e-33 Score=314.13 Aligned_cols=279 Identities=15% Similarity=0.245 Sum_probs=230.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC----e----eeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----R----LQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIK 71 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~----~----~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~ 71 (685)
|.+.|++++|+|+|+ ++|+|+.||.|+|||+.+. . ....+ .+...|.+++|++. +.+|++++.||+|+
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 678899999999999 9999999999999997542 1 12222 34578999999874 67999999999999
Q ss_pred EEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccc
Q 005656 72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK 150 (685)
Q Consensus 72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (685)
+||+.++ +.+..+.+|...|++++|+| ++.+|++|+.||+|++||+.++.....+.
T Consensus 559 lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~------------------- 615 (793)
T PLN00181 559 VWDVARS----QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK------------------- 615 (793)
T ss_pred EEECCCC----eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-------------------
Confidence 9999876 67778889999999999997 78899999999999999998765544331
Q ss_pred cCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEE
Q 005656 151 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGNFAVLGTAGGWIERF 229 (685)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~dg~i~~~ 229 (685)
....+.++.|+ ++|.++++|+.||.|++|
T Consensus 616 --------------------------------------------------~~~~v~~v~~~~~~g~~latgs~dg~I~iw 645 (793)
T PLN00181 616 --------------------------------------------------TKANICCVQFPSESGRSLAFGSADHKVYYY 645 (793)
T ss_pred --------------------------------------------------cCCCeEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 12457888884 579999999999999999
Q ss_pred ECCCCcc-ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC------ceEEEeecC-CceeEEEE
Q 005656 230 NLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG-CSLVKIVY 301 (685)
Q Consensus 230 d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~-~~i~~~~~ 301 (685)
|++++.. ...+ .+|...|.++.|. ++.++++++.|++|++||+..+ ..+..+..+ ..+.+++|
T Consensus 646 D~~~~~~~~~~~--------~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 646 DLRNPKLPLCTM--------IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred ECCCCCccceEe--------cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence 9987653 2222 2899999999997 6789999999999999999743 455556544 67889999
Q ss_pred eecCCEEEEEeCCCeEEEEEcCCCeeEEEE-------------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 302 HRVNGLLATVADDLVIRLFDVVALRMVRKF-------------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 302 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-------------~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
+|++.+|++|+.|+.|++|+......+..+ ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999998766444322 234566999999999999999999999999996
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-32 Score=312.56 Aligned_cols=303 Identities=12% Similarity=0.182 Sum_probs=246.1
Q ss_pred CCcEEEEeCCCCeeeEEeec----ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC----CceeEecccCCCCC
Q 005656 24 SGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD----PRLLRFRSGHSAPP 95 (685)
Q Consensus 24 dg~I~vwd~~~~~~~~~~~~----~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~----~~~~~~~~~h~~~v 95 (685)
+|.+++|+..+.+....+.. +|.+.|.+++|+|++++|++|+.|+.|++|++...... ....... .+...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 67788999887665544432 48999999999999999999999999999997542110 1112222 235679
Q ss_pred eEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656 96 LCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 174 (685)
Q Consensus 96 ~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (685)
.+++|++. +.+|++++.||+|++||+.+++....+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~------------------------------------------- 572 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK------------------------------------------- 572 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-------------------------------------------
Confidence 99999874 7899999999999999998766544432
Q ss_pred cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc
Q 005656 175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 253 (685)
Q Consensus 175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~ 253 (685)
.|...|.+++|+| ++.++++|+.||.|++||+.++.....+ .+..
T Consensus 573 -------------------------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---------~~~~ 618 (793)
T PLN00181 573 -------------------------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---------KTKA 618 (793)
T ss_pred -------------------------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE---------ecCC
Confidence 6788899999997 7899999999999999999988776655 3346
Q ss_pred CEEEEEEc-CCCCEEEEEECCCeEEEEECCCCc-eEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC------
Q 005656 254 EVVGVACD-STNTLMISAGYHGDIKVWDFKGRD-LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA------ 324 (685)
Q Consensus 254 ~v~~l~~~-~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~------ 324 (685)
.|.++.|+ +++.++++|+.||.|++||+++.+ ....+. +...|.++.|. ++.++++++.|++|++||+..
T Consensus 619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence 78999995 568999999999999999998765 344443 44789999997 688999999999999999974
Q ss_pred CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe--------------eccceEEEEEcCCCCe
Q 005656 325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH--------------VDVSITALSLSPNMDV 390 (685)
Q Consensus 325 ~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~--------------~~~~v~~v~~spdg~~ 390 (685)
.+++..+.+|...++.++|+|++++|++|+.||.|++|+......+..+. +...|.+++|+|++..
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 36788999999999999999999999999999999999987665443321 1123999999999999
Q ss_pred EEEEEeCCCeEEEEEc
Q 005656 391 LATAHVDQNGVYLWVN 406 (685)
Q Consensus 391 Lat~~~d~~~I~lW~~ 406 (685)
|++|+.|| .|+||+.
T Consensus 778 lva~~~dG-~I~i~~~ 792 (793)
T PLN00181 778 LVAANSTG-NIKILEM 792 (793)
T ss_pred EEEecCCC-cEEEEec
Confidence 99999997 8999974
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-33 Score=246.39 Aligned_cols=278 Identities=21% Similarity=0.413 Sum_probs=242.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+|+|.++.|+-||+ +..|++.|.+|++|+...+.+++++. +|...|..++.+.|...+++++.|..+.+||++++
T Consensus 16 ~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG-- 91 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG-- 91 (307)
T ss_pred cccceEEEEEccCCC-EEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccC--
Confidence 689999999999999 88888999999999999999999998 99999999999999999999999999999999998
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.++.....
T Consensus 92 --kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-------------------------------- 137 (307)
T KOG0316|consen 92 --KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-------------------------------- 137 (307)
T ss_pred --eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc--------------------------------
Confidence 8899999999999999999999999999999999999986543110
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
|.++|
T Consensus 138 -----------------------------------------------------------------iQild---------- 142 (307)
T KOG0316|consen 138 -----------------------------------------------------------------IQILD---------- 142 (307)
T ss_pred -----------------------------------------------------------------cchhh----------
Confidence 11111
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 320 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~ 320 (685)
.....|.++.+. +..|++|+.||+++.||++.|.+...+ .+.+|+++.|+++++..++++-|+++++.
T Consensus 143 ---------ea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLl 210 (307)
T KOG0316|consen 143 ---------EAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLL 210 (307)
T ss_pred ---------hhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeec
Confidence 344567777764 557999999999999999988765433 35799999999999999999999999999
Q ss_pred EcCCCeeEEEEecCCCCe--EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc--eEEEEEcCCCCeEEEEEe
Q 005656 321 DVVALRMVRKFEGHTDRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHV 396 (685)
Q Consensus 321 d~~~~~~~~~~~~h~~~I--~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~--v~~v~~spdg~~Lat~~~ 396 (685)
|-.+|+++..++||.+.- .+.+++.....+++||+||.|++||+.....+..+..++. |++++++|.-.-++++..
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC
Confidence 999999999999998764 4567777778999999999999999999999999987766 799999999888888864
Q ss_pred CCCeEEEEE
Q 005656 397 DQNGVYLWV 405 (685)
Q Consensus 397 d~~~I~lW~ 405 (685)
. .+..|-
T Consensus 291 ~--~~~~~~ 297 (307)
T KOG0316|consen 291 H--GDLFWY 297 (307)
T ss_pred C--ceecee
Confidence 4 678884
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.3e-34 Score=277.55 Aligned_cols=281 Identities=18% Similarity=0.292 Sum_probs=244.1
Q ss_pred CCCcEEEEEEcc-CCCCEEEEEeCCCcEEEEeCCC-CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSS-DGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fsp-dg~~~latg~~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|+..|+++.|.| .+. +|++|+.|+.|+||++-. +++++++. +|..+|..++|+++|..++|+|.|+.+++||++++
T Consensus 213 H~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred Cccccchhhhccceee-EEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence 788999999999 666 999999999999999876 89999998 99999999999999999999999999999999998
Q ss_pred CCCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
+++..+ .-...++|+.|+|++ +.+++|+.|+.|+.||+++++.+.++.
T Consensus 291 ----~~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-------------------------- 339 (503)
T KOG0282|consen 291 ----QVLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-------------------------- 339 (503)
T ss_pred ----eEEEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--------------------------
Confidence 555544 345678999999998 889999999999999999998666553
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
.|-+.|..+.|-++|..+++.+.++.+++|+.+.+..+
T Consensus 340 ------------------------------------------~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 340 ------------------------------------------RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred ------------------------------------------hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc
Confidence 55678999999999999999999999999999988776
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc---eEEEeec---CCceeEEEEeecCCEEEEE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD---LKSRWEV---GCSLVKIVYHRVNGLLATV 311 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~---~~~i~~~~~~~~~~~l~~~ 311 (685)
..... .+.-...++..+|++.+++.-+.|..|.++.+...- ....+.. .+-...+.|||||.+|++|
T Consensus 378 k~i~~-------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 378 KNIAD-------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred hhhcc-------hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 65432 344456688999999999999999999999865321 1222333 2566789999999999999
Q ss_pred eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 005656 312 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWD 363 (685)
Q Consensus 312 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd 363 (685)
..||.+.+||.++-+.+..+++|.+++..+.|+|.. ..+|+|+.||.|++|+
T Consensus 451 dsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 451 DSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999999999954 5899999999999996
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-34 Score=265.06 Aligned_cols=275 Identities=19% Similarity=0.321 Sum_probs=237.0
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
..|.|+.+..+ .+++|..|++|+|||.++..+...+. ||++.|.|+.|. .+.+++||.|.+|++||++++
T Consensus 198 kgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg---- 267 (499)
T KOG0281|consen 198 KGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG---- 267 (499)
T ss_pred CceEEEEecch---hhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCC----
Confidence 56889988742 68999999999999999999999998 999999999996 569999999999999999998
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
+++.++-+|...|..+.|+. .++++++.|.++.+||+........
T Consensus 268 e~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~--------------------------------- 312 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITL--------------------------------- 312 (499)
T ss_pred chhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHH---------------------------------
Confidence 78888889999999999974 4999999999999999865431110
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
.....+|...|..+.|+. +++++++.|.+|++|++.++..+..+.
T Consensus 313 --------------------------------rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~- 357 (499)
T KOG0281|consen 313 --------------------------------RRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLN- 357 (499)
T ss_pred --------------------------------HHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhh-
Confidence 001116777888888865 599999999999999999999998876
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
+|...|.|+.+ .++++++|+.|.+|++||+..|.+++.++++ .-|.++.|. .+.+++|+.||+|+|||
T Consensus 358 -------gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 358 -------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWD 426 (499)
T ss_pred -------cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEe
Confidence 99999999886 5789999999999999999999999998876 678888885 78999999999999999
Q ss_pred cCCCe---------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 322 VVALR---------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 322 ~~~~~---------~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
+.++. ++..+..|++.|..+.| |...+++++.|.+|.|||+..+..-
T Consensus 427 l~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 427 LQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 98763 34556679999999999 7788999999999999999877543
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-32 Score=280.79 Aligned_cols=335 Identities=18% Similarity=0.267 Sum_probs=272.7
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 81 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~ 81 (685)
+..|..++|+|... ++.++-.+|.|++||..-+.++..+. .|+++|..++|+|.+++++|||.|..|++|++...
T Consensus 9 SsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--- 83 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--- 83 (1202)
T ss_pred cccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecccc---
Confidence 35788999999876 99999999999999999999999998 99999999999999999999999999999999988
Q ss_pred CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
+++.++.||-.-|..+.|++.-.+|+|+|.|.+|+||+..+..++..+.
T Consensus 84 -rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt------------------------------ 132 (1202)
T KOG0292|consen 84 -RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT------------------------------ 132 (1202)
T ss_pred -eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe------------------------------
Confidence 8888999999999999999999999999999999999999888877664
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~ 241 (685)
+|...|.|..|+|....+++++-|-+|++||+..-+....-+
T Consensus 133 --------------------------------------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~p 174 (1202)
T KOG0292|consen 133 --------------------------------------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAP 174 (1202)
T ss_pred --------------------------------------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCC
Confidence 788899999999999999999999999999986422211111
Q ss_pred c---------------------ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce--EEEee-cCCcee
Q 005656 242 D---------------------MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWE-VGCSLV 297 (685)
Q Consensus 242 ~---------------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~-~~~~i~ 297 (685)
. .......+|...|+.++|+|.-..+++|+.|..|++|.+...+. +.+.. |-.+|.
T Consensus 175 g~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVs 254 (1202)
T KOG0292|consen 175 GSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVS 254 (1202)
T ss_pred CCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcc
Confidence 0 00113458999999999999999999999999999999875432 22333 348999
Q ss_pred EEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce--------
Q 005656 298 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ-------- 369 (685)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~-------- 369 (685)
++.|+|...++++.+.|++|+|||+...+.+++|+...++-+.++.+|..+++++|- |+-+.||-+..-++
T Consensus 255 svlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~~n~ 333 (1202)
T KOG0292|consen 255 SVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVNGNG 333 (1202)
T ss_pred eEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEcCCE
Confidence 999999999999999999999999999999999998888999999999998777665 44455565442111
Q ss_pred ---------------------eeEEeec----cceEEEEEcCCCC-eEEEEEeCCCeEEEEEcCCCcC
Q 005656 370 ---------------------IDAIHVD----VSITALSLSPNMD-VLATAHVDQNGVYLWVNRCMFS 411 (685)
Q Consensus 370 ---------------------i~~~~~~----~~v~~v~~spdg~-~Lat~~~d~~~I~lW~~~~~~~ 411 (685)
+..++.. .++.+++++|... .|+++..+.+..-++.....+.
T Consensus 334 LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~ 401 (1202)
T KOG0292|consen 334 LFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSD 401 (1202)
T ss_pred EEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCccc
Confidence 1112222 3478899999755 4555555554555665554443
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-33 Score=275.22 Aligned_cols=279 Identities=18% Similarity=0.296 Sum_probs=250.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+..|.|+.|+|... ++.++-.+|.|.|||.++...+..+. ...-+|++..|-+..+++++|+.|..|+||++++.
T Consensus 12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVksfe-V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~-- 87 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKSFE-VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG-- 87 (794)
T ss_pred cCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeeeee-ecccchhhheeeeccceEEEecCCceEEEEecccc--
Confidence 567899999999987 88889999999999999999999998 78899999999999999999999999999999988
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+.+..+..|..-|.+++.+|...+++++|.|-+|++||.+..-.
T Consensus 88 --ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa---------------------------------- 131 (794)
T KOG0276|consen 88 --EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA---------------------------------- 131 (794)
T ss_pred --eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee----------------------------------
Confidence 77888999999999999999999999999999999999753310
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
+.+.|
T Consensus 132 ---------------------------------------------------------------------------~~qtf 136 (794)
T KOG0276|consen 132 ---------------------------------------------------------------------------CEQTF 136 (794)
T ss_pred ---------------------------------------------------------------------------eeeEE
Confidence 00111
Q ss_pred ccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCC--EEEEEeCCCe
Q 005656 241 LDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG--LLATVADDLV 316 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~--~l~~~~~dg~ 316 (685)
.+|...|.+++|+|. .+.+++++.|++|++|.+....+..++..+ ..|+|+.|-+.|. +|++|++|.+
T Consensus 137 --------eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 137 --------EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred --------cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence 289999999999995 578999999999999999998888888765 8899999998664 9999999999
Q ss_pred EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEE
Q 005656 317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAH 395 (685)
Q Consensus 317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~ 395 (685)
|+|||.++..+++++.||...|+.++|+|.-.+++|||.||+||||+-.+.++...+..... ++|++-.+.+..+++|.
T Consensus 209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred EEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 99999999999999999999999999999999999999999999999999999888876655 99999999888888887
Q ss_pred eCCCeEEE
Q 005656 396 VDQNGVYL 403 (685)
Q Consensus 396 ~d~~~I~l 403 (685)
..| .|.+
T Consensus 289 Deg-~i~v 295 (794)
T KOG0276|consen 289 DEG-SVTV 295 (794)
T ss_pred cCC-cEEE
Confidence 654 5544
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.7e-34 Score=250.71 Aligned_cols=285 Identities=20% Similarity=0.327 Sum_probs=254.7
Q ss_pred CCCcEEEEEEcc---CCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC
Q 005656 1 MRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 77 (685)
Q Consensus 1 h~~~V~~l~fsp---dg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~ 77 (685)
|+.||-.++||| +|- +|++++.||.-.+-+-++|.-+.++. +|.+.|.+...+.+...-++++.|-+-++||.-+
T Consensus 13 htrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakvw~a~t 90 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKVWDAVT 90 (334)
T ss_pred CCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence 788999999986 675 99999999999999999999999999 9999999999999988999999999999999887
Q ss_pred CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 78 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
++ .+..+ .|..-|.+++|+.|.++|++|+.+..+|+||+...+...
T Consensus 91 gd----elhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App----------------------------- 136 (334)
T KOG0278|consen 91 GD----ELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP----------------------------- 136 (334)
T ss_pred hh----hhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-----------------------------
Confidence 73 44444 688899999999999999999999999999986543211
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
....+|.+.|+.+.|....+.+++.+.|+.|++||.+++..+
T Consensus 137 --------------------------------------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v 178 (334)
T KOG0278|consen 137 --------------------------------------KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEV 178 (334)
T ss_pred --------------------------------------hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEE
Confidence 111278899999999999999999999999999999999998
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
.++ ....+|+++.++++|+++.+ ...+.|++||..+..++..+..+..|.+...+|+...+++|+.|+.+
T Consensus 179 ~sL---------~~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 179 QSL---------EFNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKV 248 (334)
T ss_pred EEE---------ecCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEE
Confidence 887 56678999999999986554 45689999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 005656 318 RLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 369 (685)
Q Consensus 318 ~i~d~~~~~~~~~~-~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~ 369 (685)
+.||..++..+..+ ++|.++|.|+.|+|||...++||.||+|++|.+..++.
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99999999999886 89999999999999999999999999999999876654
No 50
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.4e-32 Score=241.75 Aligned_cols=278 Identities=17% Similarity=0.207 Sum_probs=245.9
Q ss_pred EeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEE
Q 005656 40 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRL 118 (685)
Q Consensus 40 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~v 118 (685)
.++ +|.+.|.+++|+.+|..|++|+.|+++++|+++... ...-....+|.+.|-.++|+|. ...+++++.|.+|++
T Consensus 15 ~~~-~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQ-GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred Hhh-hhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 344 899999999999999999999999999999998762 1222345789999999999885 678999999999999
Q ss_pred EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656 119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 198 (685)
Q Consensus 119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 198 (685)
||++.+++.....
T Consensus 92 wd~r~~k~~~~i~------------------------------------------------------------------- 104 (313)
T KOG1407|consen 92 WDIRSGKCTARIE------------------------------------------------------------------- 104 (313)
T ss_pred EEeccCcEEEEee-------------------------------------------------------------------
Confidence 9999998776652
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656 199 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 278 (685)
Q Consensus 199 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 278 (685)
....-.-++|+|+|+++++|..|..|..+|.++.+..... ...-.+..++|+.++.+++.....|+|.|
T Consensus 105 --~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---------~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 105 --TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---------QFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred --ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh---------cccceeeeeeecCCCCEEEEecCCceEEE
Confidence 2334456789999999999999999999999988777655 44566888999988887777777799999
Q ss_pred EECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656 279 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 279 wd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg 357 (685)
......+++..+..+ ....|+.|+|+|+++|+|+.|..+.+||++..-+++.+..+.-+|..+.||.||++||+||+|.
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc
Confidence 999999998888755 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656 358 SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 358 ~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
.|-|=++++|..+..+.+.++...|+|+|...+||.++.|.
T Consensus 254 ~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 254 FIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred eEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCC
Confidence 99999999999999999999999999999999999999875
No 51
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=8e-33 Score=247.19 Aligned_cols=291 Identities=17% Similarity=0.252 Sum_probs=242.2
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|..|++.+.|+.+|. +|.+++.|..+.||-..+|+.+.++. ||++.|.|+...-+.+.|+||+.|.++++||+.++
T Consensus 9 HERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-- 84 (327)
T KOG0643|consen 9 HERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-- 84 (327)
T ss_pred CccccceEEecCCCc-EEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeeccccceeEEEEcCCC--
Confidence 788999999999999 99999999999999999999999998 99999999999999999999999999999999998
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeC-----CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
+.+..+ .-..+|..+.|+++|++++.+.. .+.|.++|++.......-
T Consensus 85 --k~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s------------------------- 136 (327)
T KOG0643|consen 85 --KQLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDS------------------------- 136 (327)
T ss_pred --cEEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcc-------------------------
Confidence 666665 35678999999999998887653 467888887644310000
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 235 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~ 235 (685)
+......+.+.+.++.+.|.|.+.++++|..+|.|..||+++|.
T Consensus 137 ------------------------------------~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 137 ------------------------------------EEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred ------------------------------------cCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence 00000111345789999999999999999999999999999986
Q ss_pred cccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC
Q 005656 236 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL 315 (685)
Q Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 315 (685)
...... ..|...|+.++++++..++++++.|.+-++||+.+...+.++....|+++.+++|....++.|+...
T Consensus 181 ~~v~s~-------~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqe 253 (327)
T KOG0643|consen 181 ELVDSD-------EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQE 253 (327)
T ss_pred eeeech-------hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCce
Confidence 654432 2799999999999999999999999999999999999999999999999999999888777765422
Q ss_pred e--------------EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 316 V--------------IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 316 ~--------------I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
. -++|++-..+.+...+||-++|++++|+|+|+-.++|+.||.||+.-+..
T Consensus 254 A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 254 AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 1 22333333345677889999999999999999999999999999986654
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=240.17 Aligned_cols=290 Identities=16% Similarity=0.241 Sum_probs=231.1
Q ss_pred eeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEEEEEecCCCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 37 LQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
.++.+. +|.+.|..++|+|. |..|||+|.|+.|++|+...+ ....+...+ .+|...|.+++|+|.|++|++|+.|.
T Consensus 6 ~~~~~~-gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 6 LEQKLS-GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred eEEeec-CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 345666 99999999999998 889999999999999988752 223333332 47999999999999999999999999
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
++.||.-..+....
T Consensus 84 t~~Iw~k~~~efec------------------------------------------------------------------ 97 (312)
T KOG0645|consen 84 TVVIWKKEDGEFEC------------------------------------------------------------------ 97 (312)
T ss_pred eEEEeecCCCceeE------------------------------------------------------------------
Confidence 99999765443211
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656 195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 274 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg 274 (685)
.....+|...|.|++|+++|++|++++.|..|.+|.+..+....... ...+|...|..+.|+|...+|+++|.|.
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a-----VL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA-----VLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe-----eeccccccccEEEEcCCcceeEEeccCC
Confidence 11223889999999999999999999999999999998654433221 2338999999999999999999999999
Q ss_pred eEEEEECC-C--CceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 005656 275 DIKVWDFK-G--RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 350 (685)
Q Consensus 275 ~i~iwd~~-~--~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l 350 (685)
+|++|+-. . -.+.+++..+ ..+.+++|++.|..|+++++|++++||-..+.- -.-|...+..+.|. ...|
T Consensus 173 TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 173 TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccce
Confidence 99999877 2 3566777665 589999999999999999999999999755221 12378899999997 4589
Q ss_pred EEEeCCCcEEEEEcCCC------ceeeEE--eeccceEEEEEcCC-CCeEEEEEeCCCeEEEEEc
Q 005656 351 LSSGMDGSLRIWDVILA------RQIDAI--HVDVSITALSLSPN-MDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 351 ~s~s~Dg~I~iwd~~~~------~~i~~~--~~~~~v~~v~~spd-g~~Lat~~~d~~~I~lW~~ 406 (685)
++++.|+.|++|....+ +++... .+...|+++.|.|. ...|++++.|| .|++|.+
T Consensus 247 aS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG-~v~~W~l 310 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDG-IVNFWEL 310 (312)
T ss_pred EeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCc-eEEEEEe
Confidence 99999999999976542 111111 23335999999995 67888888886 9999975
No 53
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5e-32 Score=271.69 Aligned_cols=395 Identities=20% Similarity=0.297 Sum_probs=281.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEe--CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC--CCcEEEEE--
Q 005656 1 MRGAVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKMWI-- 74 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~--~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--D~~v~iWd-- 74 (685)
|+.+++|++||++|+ ++|||- ....++||++.....+..+. .|...|+|++|+|.++++++.+. |-.|.+||
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAEfv-dHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr 154 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAEFV-DHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWR 154 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhhhh-hccccceeeeecCCCcEEEeeccccceEEEhhhhh
Confidence 567899999999999 999985 56789999999988888887 89999999999999998887554 33444453
Q ss_pred --------------------------------------ecCCCCC--Cc-------------------------------
Q 005656 75 --------------------------------------FDTTDGD--PR------------------------------- 83 (685)
Q Consensus 75 --------------------------------------~~~~~~~--~~------------------------------- 83 (685)
++.+..- +.
T Consensus 155 ~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAest 234 (1080)
T KOG1408|consen 155 VNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAEST 234 (1080)
T ss_pred hcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccce
Confidence 3322100 00
Q ss_pred eeEecccC-----------------CCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHH-------H
Q 005656 84 LLRFRSGH-----------------SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR-------A 139 (685)
Q Consensus 84 ~~~~~~~h-----------------~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~ 139 (685)
...+..|| ....+||+.+ .++|+.|+.+|.|++|+..+-....++...+.... .
T Consensus 235 fait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~ 312 (1080)
T KOG1408|consen 235 FAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQP 312 (1080)
T ss_pred EEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccc
Confidence 00000111 1122344443 56899999999999999888776666654432211 1
Q ss_pred hhccccccccccCceeeeecccccc----------------c-----------------CC------------------c
Q 005656 140 RKLKMKEEELKLKPVIAFDCAEIRE----------------R-----------------DW------------------C 168 (685)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-----------------~~------------------~ 168 (685)
..+.......++|..++......+. + -| .
T Consensus 313 ~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~ 392 (1080)
T KOG1408|consen 313 EPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPR 392 (1080)
T ss_pred cccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCc
Confidence 1111111222333332222221110 0 01 0
Q ss_pred ceEEEEcCCceEEEEEcCccccCce----e-----------------------------ecCCCCCCCCeEEEEEccCCC
Q 005656 169 NVVTCHMDTAQAYVWRLQNFVLGEH----I-----------------------------LRPCPENPTAVKACTISACGN 215 (685)
Q Consensus 169 ~~~~~~~~~~~~~~w~~~~~~~~~~----~-----------------------------~~~~~~~~~~v~~~~~s~~g~ 215 (685)
..++....++.+++|++.....+.. + ....-.....+++++++|+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 1233444567788887765222111 0 000112245699999999999
Q ss_pred EEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC---CCEEEEEECCCeEEEEECCCC-ceEEEee
Q 005656 216 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGR-DLKSRWE 291 (685)
Q Consensus 216 ~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~-~~~~~~~ 291 (685)
+|++|...|.+++|++++-.....+. +|...|.|+.++.- .++|++++.|..|.+||+... .+++++.
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~e--------AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld 544 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFME--------AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD 544 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhhee--------cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence 99999999999999999887776665 99999999999753 478999999999999998632 1111110
Q ss_pred --------------------------------------------------cCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656 292 --------------------------------------------------VGCSLVKIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 292 --------------------------------------------------~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
.+..+..|+..|..+++++++.|..|+|||
T Consensus 545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence 013466788888889999999999999999
Q ss_pred cCCCeeEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeC
Q 005656 322 VVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 322 ~~~~~~~~~~~~---h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d 397 (685)
+.+++.++.|+| |.+....+...|.|-||++...|.++.++|+.+|+++....+|+. |+.+.|++|.+.|++++.|
T Consensus 625 i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred ccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence 999999999985 667788999999999999999999999999999999999988887 9999999999999999999
Q ss_pred CCeEEEEEcCC
Q 005656 398 QNGVYLWVNRC 408 (685)
Q Consensus 398 ~~~I~lW~~~~ 408 (685)
| .|+||.+..
T Consensus 705 g-CIFvW~lp~ 714 (1080)
T KOG1408|consen 705 G-CIFVWKLPL 714 (1080)
T ss_pred c-eEEEEECch
Confidence 8 999997543
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=257.69 Aligned_cols=282 Identities=21% Similarity=0.377 Sum_probs=250.8
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-------cccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-------EAHDNAIISLHFFANEPVLMSASADNSIKMWI 74 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd 74 (685)
++.+-|..|||||+ +|++|+.||.|.|||..+|++..-++ --|+.+|.|+.|+.|...|++|+.||.|++|.
T Consensus 213 KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 213 KSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred ccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 34578999999999 99999999999999999998765443 14788999999999999999999999999999
Q ss_pred ecCCCCCCceeEecc-cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 75 FDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
+.++ .+++.+. .|...|+|+.|+.|+..+++++.|.++|+.-+.++++.+++.
T Consensus 292 i~tG----~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr---------------------- 345 (508)
T KOG0275|consen 292 IETG----QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR---------------------- 345 (508)
T ss_pred Eecc----hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc----------------------
Confidence 9998 5665544 899999999999999999999999999999998888777664
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 233 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~ 233 (685)
+|.+.|....|+++|++++++++||+|++|+..+
T Consensus 346 ----------------------------------------------GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 346 ----------------------------------------------GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred ----------------------------------------------CccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 7889999999999999999999999999999999
Q ss_pred CccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC----CceeEEEEeecCCEE
Q 005656 234 GISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLL 308 (685)
Q Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~i~~~~~~~~~~~l 308 (685)
..+..+|.. .+..-+|..+..-|.+ ..+++|...++|++.++. |+.++.+..+ +...+++.+|.|.++
T Consensus 380 teC~~Tfk~------~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 380 TECLSTFKP------LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWI 452 (508)
T ss_pred hhhhhhccC------CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEE
Confidence 999988853 2556688888887765 678899999999999986 5666666543 677888999999999
Q ss_pred EEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 309 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 309 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
++.+.|+.++.|...+|+.-+++.-|...|..++-+|..+.||+-+.||.+++|.
T Consensus 453 YcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 453 YCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999994
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.4e-34 Score=262.30 Aligned_cols=270 Identities=22% Similarity=0.363 Sum_probs=227.7
Q ss_pred cccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC
Q 005656 45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 124 (685)
Q Consensus 45 h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~ 124 (685)
...+|+|+.+. ...+++|..|++|+|||.+.- .++..+.||++.|.|+.|. .+.+++|+.|.+|++||+.++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~----~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL----ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccH----HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC
Confidence 35689999985 568999999999999998776 7788889999999999995 569999999999999999999
Q ss_pred ceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCC
Q 005656 125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA 204 (685)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 204 (685)
+....+- .|...
T Consensus 268 e~l~tli--------------------------------------------------------------------hHcea 279 (499)
T KOG0281|consen 268 EPLNTLI--------------------------------------------------------------------HHCEA 279 (499)
T ss_pred chhhHHh--------------------------------------------------------------------hhcce
Confidence 8766553 56777
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 284 (685)
Q Consensus 205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (685)
|..+.|+ .+++++++.|.++.+||+.+....... +...+|...|..+.|+ .+++++++.|.+|++|++.++
T Consensus 280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~r-----rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLR-----RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHH-----HHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence 8888876 579999999999999999876532211 1233999999999986 459999999999999999999
Q ss_pred ceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 285 DLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 285 ~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
..++++..+ ..|.|+.+. ++++++|+.|.+|++||+..|.+++.+.||..-|.++.| |.+.+++|+.||+|+|||
T Consensus 351 efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 351 EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 426 (499)
T ss_pred eeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEe
Confidence 999998876 678887775 899999999999999999999999999999999999999 778999999999999999
Q ss_pred cCCCcee---------eEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 364 VILARQI---------DAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 364 ~~~~~~i---------~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
+.++... ..+. +.+.|..+.| |...+++++.|+ +|-||+.
T Consensus 427 l~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd-tILiWdF 476 (499)
T KOG0281|consen 427 LQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD-TILIWDF 476 (499)
T ss_pred cccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC-eEEEEEc
Confidence 9876432 2222 3345999999 556777777776 9999983
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-32 Score=280.13 Aligned_cols=279 Identities=19% Similarity=0.316 Sum_probs=247.7
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
.....|.+++|+|..++++++-..|.|++||+..+ .++..+..|.+||..+.|+|.+..++|||.|-.|+||+..+
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~----tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhh----hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 45678999999999999999999999999999888 78888899999999999999999999999999999999988
Q ss_pred CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656 124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 203 (685)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 203 (685)
.++..++. +|..
T Consensus 83 rrclftL~--------------------------------------------------------------------GHlD 94 (1202)
T KOG0292|consen 83 RRCLFTLL--------------------------------------------------------------------GHLD 94 (1202)
T ss_pred ceehhhhc--------------------------------------------------------------------cccc
Confidence 77665553 8889
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 283 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (685)
.|+.+.|++.-.+++++++|-+|++||.+++.++..+. +|...|.|..|+|....++++|.|.+|++||+..
T Consensus 95 YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt--------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 95 YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT--------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred eeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe--------cCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence 99999999999999999999999999999999998876 9999999999999999999999999999999864
Q ss_pred Cce-----------------------------EEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe--eEEEE
Q 005656 284 RDL-----------------------------KSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR--MVRKF 331 (685)
Q Consensus 284 ~~~-----------------------------~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~ 331 (685)
.+. ...+. |...|+.++|+|.-.++++|++|..|++|.+..-+ .+-+.
T Consensus 167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtc 246 (1202)
T KOG0292|consen 167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTC 246 (1202)
T ss_pred hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhh
Confidence 211 11222 23678999999999999999999999999987544 35667
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656 332 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLW 404 (685)
Q Consensus 332 ~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW 404 (685)
+||.+.|+++-|+|...+++|.|.|++|+|||+...+.+++++... .-+.++-+|..+++|+|+..| +.+|
T Consensus 247 rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG--m~VF 318 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG--MIVF 318 (1202)
T ss_pred hcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc--eEEE
Confidence 8999999999999999999999999999999999999999997654 499999999999999998554 4444
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-31 Score=263.89 Aligned_cols=236 Identities=19% Similarity=0.278 Sum_probs=214.3
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
-||.+..|-+..+ ++++|+.|..|+||+.++++.+..+. +|.+-|+|++.+|..++++|+|.|-+|++||++.. +
T Consensus 56 ~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~ekV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~---w 130 (794)
T KOG0276|consen 56 VPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---W 130 (794)
T ss_pred cchhhheeeeccc-eEEEecCCceEEEEecccceeeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCc---e
Confidence 3677888888776 99999999999999999999999998 99999999999999999999999999999999764 4
Q ss_pred ceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
.+..++.||..-|.+++|+|. .+.+++++-|++|++|++.+.....++.
T Consensus 131 a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~------------------------------ 180 (794)
T KOG0276|consen 131 ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE------------------------------ 180 (794)
T ss_pred eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee------------------------------
Confidence 788889999999999999994 7799999999999999998777666654
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEECCCCccccc
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQSGISRGS 239 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~~~d~~~~~~~~~ 239 (685)
+|...|.|+++-+-| .++++|+.|..|++||.++..++.+
T Consensus 181 --------------------------------------gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T 222 (794)
T KOG0276|consen 181 --------------------------------------GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT 222 (794)
T ss_pred --------------------------------------ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH
Confidence 788899999998754 6999999999999999999999998
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEE
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIR 318 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~ 318 (685)
+. +|...|..+.|+|.-..+++|+.||+++||+..+-++..++..+ ..+.|++..+.++.+++|.+.|.|.
T Consensus 223 Le--------GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 223 LE--------GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred hh--------cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 86 99999999999999999999999999999999998888887766 8899999999999999999888765
Q ss_pred E
Q 005656 319 L 319 (685)
Q Consensus 319 i 319 (685)
+
T Consensus 295 v 295 (794)
T KOG0276|consen 295 V 295 (794)
T ss_pred E
Confidence 4
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-32 Score=241.14 Aligned_cols=281 Identities=16% Similarity=0.264 Sum_probs=249.1
Q ss_pred cccccCeeEEEEeC---CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEE
Q 005656 43 EAHDNAIISLHFFA---NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119 (685)
Q Consensus 43 ~~h~~~V~~l~~sp---~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vw 119 (685)
.+|+.+|..++|+| +|-+|++++.|+.-.+-+-+++ .-+.++.||.+.|++.....+...-++++.|-+-++|
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg----dwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG----DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC----CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 39999999999986 7889999999998877765665 5677888999999999999888888999999999999
Q ss_pred EeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656 120 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 199 (685)
Q Consensus 120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 199 (685)
|..++.....+
T Consensus 87 ~a~tgdelhsf--------------------------------------------------------------------- 97 (334)
T KOG0278|consen 87 DAVTGDELHSF--------------------------------------------------------------------- 97 (334)
T ss_pred hhhhhhhhhhh---------------------------------------------------------------------
Confidence 99888766655
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656 200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 279 (685)
Q Consensus 200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 279 (685)
.|...|.+++|+.|.++|++|+.+..+++||++....... ...+|.+.|..+.|....+.|++++.|++|++|
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~-------E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW 170 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK-------EISGHTGGIRTVLWCHEDKCILSSADDKTVRLW 170 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch-------hhcCCCCcceeEEEeccCceEEeeccCCceEEE
Confidence 5667799999999999999999999999999987655433 223999999999999999999999999999999
Q ss_pred ECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656 280 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL 359 (685)
Q Consensus 280 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I 359 (685)
|.+++..++++..+.+++++.++++|++|.++. .+.|.+||..+-.+++.++ -...|.+...+|+...+++|+.|+.+
T Consensus 171 D~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 171 DHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKV 248 (334)
T ss_pred EeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEE
Confidence 999999999999999999999999999887664 4689999999998888876 44569999999999999999999999
Q ss_pred EEEEcCCCceeeEE-e-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 360 RIWDVILARQIDAI-H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 360 ~iwd~~~~~~i~~~-~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
+.||..+|..+..+ + ++++|.||.|+|||..-|+|+.|| +|+||..
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG-TirlWQt 296 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG-TIRLWQT 296 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc-eEEEEEe
Confidence 99999999999886 3 566799999999999999999998 9999974
No 59
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-32 Score=252.89 Aligned_cols=250 Identities=18% Similarity=0.279 Sum_probs=224.8
Q ss_pred eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce
Q 005656 37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 116 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i 116 (685)
+...+. +|..+|+.+-|+|+-.++++++.|++|++||..++ .+.+.++||...|..|+|+..|+++++++.|-.+
T Consensus 100 l~~~l~-g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg----~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 100 LVQKLA-GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG----ELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred chhhhh-ccccceeeeeeccCceEEEEecCCceEEEEEccch----hhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 444555 89999999999999999999999999999999988 6788899999999999999999999999999999
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
++||..+...
T Consensus 175 ~LWd~~~~~~---------------------------------------------------------------------- 184 (406)
T KOG0295|consen 175 KLWDFDTFFR---------------------------------------------------------------------- 184 (406)
T ss_pred hheeHHHHHH----------------------------------------------------------------------
Confidence 9999754210
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656 197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 276 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 276 (685)
++. ...+|...|.+++|-|.|.++++++.|.+|
T Consensus 185 ---------------------------------------c~k--------s~~gh~h~vS~V~f~P~gd~ilS~srD~ti 217 (406)
T KOG0295|consen 185 ---------------------------------------CIK--------SLIGHEHGVSSVFFLPLGDHILSCSRDNTI 217 (406)
T ss_pred ---------------------------------------HHH--------HhcCcccceeeEEEEecCCeeeecccccce
Confidence 000 112888999999999999999999999999
Q ss_pred EEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCC---------
Q 005656 277 KVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED--------- 346 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spd--------- 346 (685)
+.|++.++-++.++..+ ..+..+..+.||.++|+++.|.++++|-+.++++...+++|..+|-+++|.|.
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence 99999999999999876 77889999999999999999999999999999999999999999999999773
Q ss_pred ------CCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCC
Q 005656 347 ------GKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCM 409 (685)
Q Consensus 347 ------g~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~ 409 (685)
+.++.+++.|++|++||+.+|.++.++.+|.. |..++|+|-|+||+++..|+ ++++|+.+..
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk-tlrvwdl~~~ 366 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK-TLRVWDLKNL 366 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC-cEEEEEeccc
Confidence 25999999999999999999999999998877 99999999999999999887 9999997654
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=8.8e-32 Score=245.10 Aligned_cols=289 Identities=21% Similarity=0.338 Sum_probs=240.8
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-----------------C-eeeEEeecccccCeeEEEEeCCCcEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-----------------R-RLQSVIREAHDNAIISLHFFANEPVLM 62 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-----------------~-~~~~~~~~~h~~~V~~l~~sp~~~~l~ 62 (685)
|++++.+-+|+|||. ++|||+.|-+|+|.|++. + ..++++. .|.++|+++.|+|...+|+
T Consensus 111 HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETILI 188 (430)
T ss_pred cccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhheEE
Confidence 899999999999999 999999999999999871 1 2355665 8999999999999999999
Q ss_pred EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 142 (685)
Q Consensus 63 s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 142 (685)
+|+.|++|+++|+.....+ +..+.+ ....+|.++.|+|.|.+|+.|....++++||+.+-++.....
T Consensus 189 S~srD~tvKlFDfsK~saK-rA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan----------- 255 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAK-RAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN----------- 255 (430)
T ss_pred eccCCCeEEEEecccHHHH-HHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----------
Confidence 9999999999999765321 222222 356789999999999999999999999999998876533221
Q ss_pred cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 005656 143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 222 (685)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 222 (685)
+...|...|+++.+++.|+..++|+.
T Consensus 256 ------------------------------------------------------Pd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 256 ------------------------------------------------------PDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred ------------------------------------------------------cccccccceeEEEecCCccEEEEecc
Confidence 22378899999999999999999999
Q ss_pred CCcEEEEECCCCccccccccccccccCCCCc-CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC------c
Q 005656 223 GGWIERFNLQSGISRGSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC------S 295 (685)
Q Consensus 223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~ 295 (685)
||.|++||--+++++.++.. +|.+ .|.+..|..++++++++|.|..+++|.+.+++++..+...+ -
T Consensus 282 DG~IklwDGVS~rCv~t~~~-------AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~ 354 (430)
T KOG0640|consen 282 DGAIKLWDGVSNRCVRTIGN-------AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKH 354 (430)
T ss_pred CCcEEeeccccHHHHHHHHh-------hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhh
Confidence 99999999999999988864 6765 68899999999999999999999999999999998887541 1
Q ss_pred eeEEEEeecCCEEEEEeC-CCeEEEEEcCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 296 LVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 296 i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
-+...|+....+++.-.. .+.+.-||.+++..+..+. ||++.+..+.-||.+.-+++||.|-.+|+|--.
T Consensus 355 rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 355 RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 234456655666555433 4688999999887666553 899999999999999999999999999999643
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=259.60 Aligned_cols=276 Identities=19% Similarity=0.348 Sum_probs=242.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|.|.|..+.|-++.. .|++|+.|..|.+|++...+ .+.++. |-.++|+++.|.++++.+++++.|+.+++|+++..
T Consensus 174 h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred cccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 789999999999866 79999999999999998776 677777 88899999999999999999999999999999887
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
+...++.||...|+++.|......+++|+.|.+|+.||+....+.+++-
T Consensus 252 ----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--------------------------- 300 (459)
T KOG0288|consen 252 ----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--------------------------- 300 (459)
T ss_pred ----hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------------------------
Confidence 8889999999999999999877679999999999999998776655442
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
....+..++.+ +..+++|..|+.|++||+++.....
T Consensus 301 ------------------------------------------~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 301 ------------------------------------------PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred ------------------------------------------ccccccceEec--ceeeeecccccceEEEeccCCceee
Confidence 12223333333 5678889999999999999998887
Q ss_pred ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-----CceeEEEEeecCCEEEEEeC
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVAD 313 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~ 313 (685)
.. .-.+.|+++..++++..+.+++.|.++.+.|+++......+... +..+.+.|||++.|+++|+.
T Consensus 337 sv---------~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 337 SV---------PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred Ee---------ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 76 34459999999999999999999999999999999888877643 66889999999999999999
Q ss_pred CCeEEEEEcCCCeeEEEEecCCCC--eEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656 314 DLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~~~~h~~~--I~~l~~spdg~~l~s~s~Dg~I~iw 362 (685)
||.|+||++.++++...+...... |++++|+|.|..|++++.++.+.+|
T Consensus 408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999999999999988765544 9999999999999999999999999
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.7e-32 Score=248.14 Aligned_cols=290 Identities=19% Similarity=0.282 Sum_probs=253.4
Q ss_pred EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC----ceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP----RLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~----~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
+.++.+....+.|..|+|||++|++|+.||-|.+|++.++.-.. +....+.-+..+|.|+.|+.|...+++|+.||
T Consensus 206 r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 206 RSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred hheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 34445677889999999999999999999999999998763211 11122345788999999999999999999999
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
.|++|.+.++.+.+.+..
T Consensus 286 kIKvWri~tG~ClRrFdr-------------------------------------------------------------- 303 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDR-------------------------------------------------------------- 303 (508)
T ss_pred cEEEEEEecchHHHHhhh--------------------------------------------------------------
Confidence 999999999998877643
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656 195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 274 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg 274 (685)
.|...|+|+.||.|+..+++++.|..+++.-+.+|+....+. +|++.|+...|.++|..+++++.||
T Consensus 304 -----AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr--------GHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 304 -----AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR--------GHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred -----hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc--------CccccccceEEcCCCCeEEEecCCc
Confidence 567889999999999999999999999999999999998886 9999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeecC---CceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCeeEEEEec---CCCCeEEEEEcCCC
Q 005656 275 DIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRMVRKFEG---HTDRITDFCFSEDG 347 (685)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~I~~l~~spdg 347 (685)
+|++|+.++.+++.++... .+|..+..-|.+. .++++...++|+|.++. |+.++.|.. ..+...+.+.||.|
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence 9999999999999888764 6788888887665 88888889999999975 788888864 23456777899999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 348 KWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 348 ~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
.|+.+.+.|+.++.|.+.+|++-..+..+.. |..++-+|..+.||+-+.|| .+++|.
T Consensus 450 ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDg-llKLWk 507 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDG-LLKLWK 507 (508)
T ss_pred cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccc-hhhhcC
Confidence 9999999999999999999999999987766 99999999999999999998 899994
No 63
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2e-31 Score=247.35 Aligned_cols=248 Identities=19% Similarity=0.303 Sum_probs=222.7
Q ss_pred eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce
Q 005656 37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 116 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i 116 (685)
+.+.+. +|.+.|.|+++.|...+++||+.|++++|||+.++ ++..++.||...|..+++++-..|+++++.|+.|
T Consensus 143 l~rVi~-gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg----~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 143 LYRVIS-GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG----QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred ehhhhh-hccceEEEEeeCCCceeEEecCCCceeEEEEcccC----eEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 344555 99999999999999999999999999999999998 8888999999999999999999999999999999
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
+.||++..+.++.+
T Consensus 218 KCwDLe~nkvIR~Y------------------------------------------------------------------ 231 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHY------------------------------------------------------------------ 231 (460)
T ss_pred EEEechhhhhHHHh------------------------------------------------------------------
Confidence 99999766533222
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656 197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 276 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 276 (685)
.+|-+.|.|++.+|.-..|++|+.|.++
T Consensus 232 ----------------------------------------------------hGHlS~V~~L~lhPTldvl~t~grDst~ 259 (460)
T KOG0285|consen 232 ----------------------------------------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTI 259 (460)
T ss_pred ----------------------------------------------------ccccceeEEEeccccceeEEecCCcceE
Confidence 2899999999999999999999999999
Q ss_pred EEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 005656 277 KVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~ 355 (685)
++||+++...+..+..+ .+|..+.+.|-...+++|+.|++|++||+..|+...++..|...|.+++.+|.-..+|++|.
T Consensus 260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence 99999999999988855 89999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656 356 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 410 (685)
Q Consensus 356 Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~ 410 (685)
|. |+-|+++.|..+..+..+.. +++++...|| ++++|+.+| .+.+|+-+..+
T Consensus 340 dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng-~~~fwdwksg~ 392 (460)
T KOG0285|consen 340 DN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNG-SIMFWDWKSGH 392 (460)
T ss_pred cc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCce-EEEEEecCcCc
Confidence 85 99999999999999887777 8899988776 566676665 99999966543
No 64
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=258.67 Aligned_cols=240 Identities=21% Similarity=0.360 Sum_probs=212.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.++|+++.|+++|. ++++|+.+|.|++|+..-.. +..++..|...|++++|+|+...++|+|.||+|+|||+...
T Consensus 137 HDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-- 212 (464)
T KOG0284|consen 137 HDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-- 212 (464)
T ss_pred hcccceeEEEccCCC-EEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC--
Confidence 889999999999999 99999999999999976544 33444366699999999999999999999999999998876
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+.-+.+.||...|.++.|+|.-..|+++|.|..|++||.+++.++.++.
T Consensus 213 --kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh----------------------------- 261 (464)
T KOG0284|consen 213 --KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH----------------------------- 261 (464)
T ss_pred --chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-----------------------------
Confidence 4445558999999999999998899999999999999999998766553
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
.|...|..+.|++++++|++++.|..+++||+++.+....+
T Consensus 262 ---------------------------------------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 262 ---------------------------------------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ---------------------------------------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 78899999999999999999999999999999987777776
Q ss_pred ccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEee--cCCceeEEEEeecCCEEEEEeCCCeE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
. +|...|+++.|+|-. .+|.+|+.||.|..|.+...+++..+. +...|.+++|+|-|.+|++|+.|.++
T Consensus 303 r--------~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~ 374 (464)
T KOG0284|consen 303 R--------GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTV 374 (464)
T ss_pred h--------cchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcce
Confidence 5 899999999999975 578889999999999998666665554 45899999999999999999999999
Q ss_pred EEEEc
Q 005656 318 RLFDV 322 (685)
Q Consensus 318 ~i~d~ 322 (685)
++|.-
T Consensus 375 rfw~r 379 (464)
T KOG0284|consen 375 RFWTR 379 (464)
T ss_pred eeecc
Confidence 99964
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5.4e-32 Score=255.97 Aligned_cols=285 Identities=22% Similarity=0.384 Sum_probs=249.2
Q ss_pred eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656 38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 117 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~ 117 (685)
...+. .|.+.|..+.|-++...|++|+.|..|++|++.... ...+.++.|..++|+++.|.++++++++++.|+.++
T Consensus 168 ~~~ld-~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 168 LFVLD-AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhh-ccccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 33444 899999999999999999999999999999887653 356778889999999999999999999999999999
Q ss_pred EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656 118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 197 (685)
Q Consensus 118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 197 (685)
+|++...+...++.
T Consensus 245 ~Wnvd~~r~~~TLs------------------------------------------------------------------ 258 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLS------------------------------------------------------------------ 258 (459)
T ss_pred eeeccchhhhhhhc------------------------------------------------------------------
Confidence 99998776655553
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656 198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 277 (685)
Q Consensus 198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~ 277 (685)
+|...|+++.|......++.|+.|.+|+.||++...+..++. ....+..|+.+ ...+++|-.|++|+
T Consensus 259 --GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 259 --GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------PGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred --ccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------ccccccceEec--ceeeeecccccceE
Confidence 788999999999888889999999999999999988877653 33455666665 45688888999999
Q ss_pred EEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC----CCCeEEEEEcCCCCEEEEE
Q 005656 278 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 278 iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h----~~~I~~l~~spdg~~l~s~ 353 (685)
+||.++..+......++.|+++..++++..+.+++.|.++.+.|+++.+....+... ....+.+.|||++.|+++|
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence 999999999999999999999999999999999999999999999999888887642 2348899999999999999
Q ss_pred eCCCcEEEEEcCCCceeeEEeecc---ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 354 GMDGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 354 s~Dg~I~iwd~~~~~~i~~~~~~~---~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
|.||.|+||++.++++...+.... .|++++|+|.|..|++++.++ .+.+|.
T Consensus 406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~-~v~lW~ 459 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK-AVTLWT 459 (459)
T ss_pred cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc-ceEecC
Confidence 999999999999999988886432 499999999999999999887 899993
No 66
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=1.5e-30 Score=275.30 Aligned_cols=284 Identities=19% Similarity=0.305 Sum_probs=239.8
Q ss_pred CCcEEEEEEccCCCCEEEEEe--CCCcEEEEeCCC------------CeeeEEeecccccCeeEEEEeCCCcEEEEecCC
Q 005656 2 RGAVTALAFSSDGQPLLASGA--SSGVISIWNLEK------------RRLQSVIREAHDNAIISLHFFANEPVLMSASAD 67 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~--~dg~I~vwd~~~------------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D 67 (685)
...|.+++.+|||. .+|||+ .||.++||+.+. .+.+.++. .|.+.|+|+.|+|||.+||+||.|
T Consensus 13 ~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred CeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCCeEeeccCc
Confidence 45789999999999 999999 999999998652 23455555 899999999999999999999999
Q ss_pred CcEEEEEecCCC--------------CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechh
Q 005656 68 NSIKMWIFDTTD--------------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR 133 (685)
Q Consensus 68 ~~v~iWd~~~~~--------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 133 (685)
+.|.||...... ..++.+..+.+|...|..++|+|++.+|++++.|++|.+|+..+.+....+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl--- 167 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL--- 167 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee---
Confidence 999999987310 124567788899999999999999999999999999999987655332222
Q ss_pred hHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC
Q 005656 134 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 213 (685)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 213 (685)
T Consensus 168 -------------------------------------------------------------------------------- 167 (942)
T KOG0973|consen 168 -------------------------------------------------------------------------------- 167 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC
Q 005656 214 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG 293 (685)
Q Consensus 214 g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (685)
.+|.+.|.++.|+|-|++|++-+.|++|++|++.+..+...+..+
T Consensus 168 -----------------------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~p 212 (942)
T KOG0973|consen 168 -----------------------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKP 212 (942)
T ss_pred -----------------------------------ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccc
Confidence 189999999999999999999999999999998876666655432
Q ss_pred -------CceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCC-----CC---------
Q 005656 294 -------CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRMVRKFEGHTDRITDFCFSED-----GK--------- 348 (685)
Q Consensus 294 -------~~i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spd-----g~--------- 348 (685)
.....+.|+|||.+|++... -.++.|.+-.+.+.-..|-||.+++.++.|+|. .+
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence 55788999999999998743 348999999999999999999999999999981 11
Q ss_pred ---EEEEEeCCCcEEEEEcCCCceeeEEe--eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 349 ---WLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 349 ---~l~s~s~Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
.+|+||.|++|.||.....+++..++ +...|..++|+|||..|++++.|| .|.+...
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG-tV~~i~F 354 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG-TVALIHF 354 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC-eEEEEEc
Confidence 67899999999999998888887775 456699999999999999999998 8998863
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.4e-29 Score=231.48 Aligned_cols=281 Identities=15% Similarity=0.212 Sum_probs=239.5
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC--CCcEEEEEecCCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTD 79 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--D~~v~iWd~~~~~ 79 (685)
.+.|+++.|+++|. +|++++.|.+|+|||..+++...++. .+.-+|..++|......++.++. |.+||.-++...
T Consensus 14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN- 90 (311)
T KOG1446|consen 14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN- 90 (311)
T ss_pred CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecC-
Confidence 47899999999999 88889999999999999999999998 78888999999988887777776 899999999888
Q ss_pred CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656 80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 159 (685)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (685)
+.++.+.||...|++++.+|-+..+++++.|++|++||++..++...+.
T Consensus 91 ---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---------------------------- 139 (311)
T KOG1446|consen 91 ---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---------------------------- 139 (311)
T ss_pred ---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe----------------------------
Confidence 8999999999999999999999999999999999999998766544432
Q ss_pred ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc--c
Q 005656 160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS--R 237 (685)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~--~ 237 (685)
...-..+++.|.|-++|++...+.|.+||+++-.. .
T Consensus 140 ------------------------------------------~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 140 ------------------------------------------LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred ------------------------------------------cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence 22334678999999999999999999999987422 2
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC----ceeEEEEeecCCEEEEEeC
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----SLVKIVYHRVNGLLATVAD 313 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~ 313 (685)
..+. ...+.....+.+.|+|+|++++.+...+.+++.|.-+|....++.... -....+|.||++++++|+.
T Consensus 178 ~tf~-----i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 178 TTFS-----ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred eeEc-----cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence 2221 111456788999999999999999999999999999999888887652 2257889999999999999
Q ss_pred CCeEEEEEcCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 314 DLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
||+|.+|+++++..+..+++ +.+++.++.|+|....+++++ ..+.+|=..
T Consensus 253 dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 253 DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 99999999999999999998 799999999999766666654 568888543
No 68
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=5.1e-30 Score=228.63 Aligned_cols=281 Identities=17% Similarity=0.262 Sum_probs=238.9
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~ 78 (685)
|.++|.+++|+.+|. .||+|+.|+++.+|+++..+...... .+|.+.|-.++|.|.. ..+++++.|.+|++||+..+
T Consensus 19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 678899999999999 99999999999999998875443321 3899999999999854 59999999999999999887
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
++........+ =.-+.|+|+|.+++.++.|..|...|.++.+.....
T Consensus 98 ----k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---------------------------- 144 (313)
T KOG1407|consen 98 ----KCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---------------------------- 144 (313)
T ss_pred ----cEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehh----------------------------
Confidence 55544433333 355899999999999999999999999877654443
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
.....+.-++|+-++++++..+..|.|.+....+-+++.
T Consensus 145 -----------------------------------------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~ 183 (313)
T KOG1407|consen 145 -----------------------------------------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ 183 (313)
T ss_pred -----------------------------------------cccceeeeeeecCCCCEEEEecCCceEEEEecccccccc
Confidence 334567788899888888888888999999999888887
Q ss_pred ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeE
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
.+. +|.....||.|+|+|+++++|+.|..+.+||+...-+.+.+. +.-+|..+.|+.+|++||+|+.|..|
T Consensus 184 si~--------AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 184 SIK--------AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred ccc--------cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence 775 999999999999999999999999999999999877777665 45899999999999999999999999
Q ss_pred EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcC
Q 005656 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---------GSLRIWDVI 365 (685)
Q Consensus 318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---------g~I~iwd~~ 365 (685)
-|=++++|..+..+. +.++-..++|+|...+||-++.| |+|++|-++
T Consensus 256 DIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 256 DIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 999999999999887 88999999999999999977654 567776554
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=5.1e-30 Score=229.31 Aligned_cols=289 Identities=15% Similarity=0.226 Sum_probs=236.2
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
||..+++.+.|+.+|.+|++++.|.+..+|--..+ ..+.+..||.+.|+|+...-+.+++++|+.|.++++||+.+
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG----erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG----ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCC----ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 89999999999999999999999999999976666 67888899999999999999999999999999999999999
Q ss_pred CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656 124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 203 (685)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 203 (685)
+++...+ ..+.
T Consensus 84 Gk~la~~---------------------------------------------------------------------k~~~ 94 (327)
T KOG0643|consen 84 GKQLATW---------------------------------------------------------------------KTNS 94 (327)
T ss_pred CcEEEEe---------------------------------------------------------------------ecCC
Confidence 9987766 3467
Q ss_pred CeEEEEEccCCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656 204 AVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 278 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 278 (685)
+|..+.|+.+|+++++.+.+ +.|.+||++.......- ..+......+...++.+-|.|.+++|++|..||.|.+
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s-~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDS-EEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISI 173 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcc-cCceEEecCCccceeeeeecccCCEEEEecCCCcEEE
Confidence 89999999999999888654 67999999843311100 0001112267789999999999999999999999999
Q ss_pred EECCCCceE-EEe-ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656 279 WDFKGRDLK-SRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356 (685)
Q Consensus 279 wd~~~~~~~-~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D 356 (685)
||++++... ... .+...|+.+.++++..++++++.|.+-++||..+.++++++. ...+|++.+++|-...++.|+.-
T Consensus 174 ~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 174 YDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred EEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCc
Confidence 999997544 332 345899999999999999999999999999999999999988 56789999999987777766532
Q ss_pred C--cEEEEEcCCC------------ceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 357 G--SLRIWDVILA------------RQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 357 g--~I~iwd~~~~------------~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
. .|..=+.+.| +.+..+++|. +|++++|+|+|+..++|+.|| .|++.....
T Consensus 253 eA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG-~VR~h~Fd~ 318 (327)
T KOG0643|consen 253 EAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG-YVRLHHFDS 318 (327)
T ss_pred eeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc-eEEEEEecc
Confidence 2 1332233333 3445556554 599999999999999999998 899875443
No 70
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6.3e-31 Score=271.44 Aligned_cols=281 Identities=21% Similarity=0.300 Sum_probs=215.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEE-------------eC---CCc--EEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF-------------FA---NEP--VLM 62 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~-------------sp---~~~--~l~ 62 (685)
|+|.|+++.||+||+ |||+|+.||.|+||.+...+... .+.+.-.++.+ ++ .++ ..-
T Consensus 266 h~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~----~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMR----VAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred cCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhc----ccccccchhhhhhhhccccCccccccccccccccccc
Confidence 899999999999999 99999999999999986633211 11111111111 11 011 111
Q ss_pred EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 142 (685)
Q Consensus 63 s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 142 (685)
.+..... .+.......-..++++.+.||.+.|..+.|+.++ +|++++.|.+||+|++....+++.+
T Consensus 341 ~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F------------ 406 (712)
T KOG0283|consen 341 KGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF------------ 406 (712)
T ss_pred cccCCcc-ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE------------
Confidence 1222222 1222122222336778889999999999999765 8999999999999998766554433
Q ss_pred cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 005656 143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 222 (685)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 222 (685)
T Consensus 407 -------------------------------------------------------------------------------- 406 (712)
T KOG0283|consen 407 -------------------------------------------------------------------------------- 406 (712)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEE
Q 005656 223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301 (685)
Q Consensus 223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~ 301 (685)
.|...|+||+|+| |.+++++|+.||.|+||++...+...-...+.-|++++|
T Consensus 407 ---------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy 459 (712)
T KOG0283|consen 407 ---------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCY 459 (712)
T ss_pred ---------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEe
Confidence 7899999999999 568999999999999999999999888888899999999
Q ss_pred eecCCEEEEEeCCCeEEEEEcCCCeeEEEEec--C------CCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeE
Q 005656 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEG--H------TDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDA 372 (685)
Q Consensus 302 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h------~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~ 372 (685)
.|+|+..++|+-+|.+++|+....+....+.- | ...|+++.|.|.. ..|++.+.|..|||||..+..++..
T Consensus 460 ~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K 539 (712)
T KOG0283|consen 460 SPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK 539 (712)
T ss_pred ccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh
Confidence 99999999999999999999998877665531 1 2279999999843 3577778899999999998888888
Q ss_pred Eeeccc---eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 373 IHVDVS---ITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 373 ~~~~~~---v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
|++... -....|+.||+++++++.|. .||+|++..
T Consensus 540 fKG~~n~~SQ~~Asfs~Dgk~IVs~seDs-~VYiW~~~~ 577 (712)
T KOG0283|consen 540 FKGFRNTSSQISASFSSDGKHIVSASEDS-WVYIWKNDS 577 (712)
T ss_pred hcccccCCcceeeeEccCCCEEEEeecCc-eEEEEeCCC
Confidence 875333 56778999999999999776 999998643
No 71
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=3.6e-30 Score=245.02 Aligned_cols=281 Identities=18% Similarity=0.334 Sum_probs=248.6
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~ 83 (685)
.|+++...|... .+.||+.|..+.++|..+++.+..++ ||...|+.+.|+|+...+++++.|..|+||..... .
T Consensus 221 gi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~----s 294 (506)
T KOG0289|consen 221 GITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS----S 294 (506)
T ss_pred CeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccc----c
Confidence 578888888744 89999999999999999999999998 99999999999999999999999999999987765 3
Q ss_pred eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
.......|..+|+.+..+|.|.||++++.||+..+.|++++.+.......
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~------------------------------ 344 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE------------------------------ 344 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec------------------------------
Confidence 44455689999999999999999999999999999999988766544210
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
...-.+++.+|+|||..+.+|+.||.|++||+.++.....|+
T Consensus 345 ------------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-- 386 (506)
T KOG0289|consen 345 ------------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-- 386 (506)
T ss_pred ------------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC--
Confidence 123558999999999999999999999999999999888776
Q ss_pred cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
+|.++|..++|+.+|.++++++.|+.|++||++..+...++... .++.++.|.+.|.+|++++.|-.|++++
T Consensus 387 ------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 387 ------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 99999999999999999999999999999999988877777765 4699999999999999998877777776
Q ss_pred cC--CCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 322 VV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 322 ~~--~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
-. ++..+..+..|.+..+++.|..+.++++++|.|..++++.+
T Consensus 461 k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 461 KKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 43 56788888899999999999999999999999999998864
No 72
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.7e-32 Score=255.01 Aligned_cols=354 Identities=14% Similarity=0.191 Sum_probs=269.6
Q ss_pred eEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce
Q 005656 38 QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 116 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i 116 (685)
+..+. ||.++|.|++=+|.. ..++||+.||.|++||+... .+...+..|.+.|..|++.. ..++++|.|.+|
T Consensus 59 v~~L~-gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 59 VGSLD-GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred hhhcc-ccccccchhhcCcchhhhhhccccCceEEEEehhhh----hhhheeecccCceeeEEecc--cceEEecCCcce
Confidence 45565 999999999999987 68999999999999999887 67888899999999999986 579999999999
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
+.|.+... ....+
T Consensus 132 K~wk~~~~-p~~ti------------------------------------------------------------------ 144 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTI------------------------------------------------------------------ 144 (433)
T ss_pred eeeeccCC-cceee------------------------------------------------------------------
Confidence 99987542 11111
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCC-EEEEEECCCe
Q 005656 197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGD 275 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~ 275 (685)
...+.+..+.-+..++.+++++. .|.+||.+...+...+. -....|.++.|+|... .|++|+.|+.
T Consensus 145 ---lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms--------wG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 145 ---LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS--------WGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ---eccccccccccccccccccccCc--eeeecccccCCccceee--------cCCCceeEEecCCCcchheeeeccCCc
Confidence 11233344444444555555543 59999998887777764 4557899999999764 5677779999
Q ss_pred EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 005656 276 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s 354 (685)
|.+||++.+.++..+.....-+.++|+|.+-.+++|..|..++.||++.. +++..+.+|.+.|.++.|||.|+-+++||
T Consensus 212 IvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred eEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 99999999999999888888899999998889999999999999999875 67888899999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCCCCCCCCCCCCccceeecCCC
Q 005656 355 MDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPS 432 (685)
Q Consensus 355 ~Dg~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 432 (685)
.|.+|+||.+..+..-..+... ..|.||.||-|.+|+++|+.|+ .|++|..+..-. ..+..|.
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~-nvRlWka~Asek--------------lgv~t~r 356 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG-NVRLWKAKASEK--------------LGVITPR 356 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc-ceeeeecchhhh--------------cCCCChh
Confidence 9999999999988776665443 3499999999999999999887 899997433211 0001111
Q ss_pred ccCCCCcCCCCCCCCCCcCCCCCCCCCCCCCCcCCCCcCceeecCCcHhHHhhccchHHHHhhcCCCCCCCCCCCCC
Q 005656 433 VSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAP 509 (685)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~i~~r~k~~~~~~~~~~~p 509 (685)
|. ..-+..+...+.|+..+++.. ......||+....++-....++...+.+|+.....+.|
T Consensus 357 --------Ek-------~~~~Y~e~Lke~y~~~peIkR-IarHR~lPk~i~~a~ki~r~~~~s~~rrea~~~~~~~~ 417 (433)
T KOG0268|consen 357 --------EK-------NKLEYNEALKERYKHLPEIKR-IARHRHLPKPIKKAQKIKRTVNDSERRREANRRRHSKP 417 (433)
T ss_pred --------HH-------HHHHHHHHHHHHHhhcHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 00 002223334455665555444 34788899987766666666666666666665555554
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=5.7e-30 Score=268.83 Aligned_cols=280 Identities=22% Similarity=0.386 Sum_probs=248.1
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEE-eecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV-IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
...|++..|. +| .+++|+.+++|.+||..++..+.. +. ||.+.|.+++|...+.+|++|+.|.++++||..++
T Consensus 208 ~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~~l~-GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-- 281 (537)
T KOG0274|consen 208 DHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILTRLV-GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-- 281 (537)
T ss_pred cchhhhheee-cC--eEEecCCCceeEEeecccceEEEeecc-CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--
Confidence 3457788888 34 689999999999999999999888 76 99999999999988889999999999999998887
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
.+...+.+|...|.++...+. .+++|+.|.+|++|++.++.....+.
T Consensus 282 --~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~l~~----------------------------- 328 (537)
T KOG0274|consen 282 --ECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLNLLR----------------------------- 328 (537)
T ss_pred --cEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcceEEEec-----------------------------
Confidence 889999999999999988644 78889999999999999887766653
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
+|..+|.++.++ +.++++|+.||.|.+||+.+++....+
T Consensus 329 ---------------------------------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl 367 (537)
T KOG0274|consen 329 ---------------------------------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL 367 (537)
T ss_pred ---------------------------------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee
Confidence 578899999998 899999999999999999999998887
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
. +|.+.|.++.+.+. ..+++|+.|++|++||+.+. +++.++.++..+. ......+++|++++.|++|++
T Consensus 368 ~--------gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~ 437 (537)
T KOG0274|consen 368 S--------GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKL 437 (537)
T ss_pred c--------CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEE
Confidence 6 89999999988765 78999999999999999999 8888888875544 334455889999999999999
Q ss_pred EEcCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE
Q 005656 320 FDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 373 (685)
Q Consensus 320 ~d~~~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~ 373 (685)
||..++++++.+.+ |.+.|+.+++. ...+++++.||++++||++++.+++.+
T Consensus 438 WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 438 WDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 99999999999998 77889998886 467889999999999999999988766
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.7e-30 Score=235.47 Aligned_cols=293 Identities=19% Similarity=0.322 Sum_probs=244.2
Q ss_pred cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC--------------CCCCceeEecccCCCCCeEEEEecCCCEEE
Q 005656 43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--------------DGDPRLLRFRSGHSAPPLCIRFYANGRHIL 108 (685)
Q Consensus 43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~--------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 108 (685)
..|.+++.+.+|+|||.+++|||.|.+|+|.|++.. ......++++..|..+|+++.|+|....|+
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 379999999999999999999999999999998721 112246788899999999999999999999
Q ss_pred EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCcc
Q 005656 109 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 188 (685)
Q Consensus 109 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 188 (685)
+++.|++|++||+......+.+ +..
T Consensus 189 S~srD~tvKlFDfsK~saKrA~----------K~~--------------------------------------------- 213 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAF----------KVF--------------------------------------------- 213 (430)
T ss_pred eccCCCeEEEEecccHHHHHHH----------HHh---------------------------------------------
Confidence 9999999999998543221111 100
Q ss_pred ccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE
Q 005656 189 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI 268 (685)
Q Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 268 (685)
....+|+++.|+|.|.++++|+.-..+++||+.+-++...-. ....|++.|+++.+++.++..+
T Consensus 214 -----------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-----Pd~qht~ai~~V~Ys~t~~lYv 277 (430)
T KOG0640|consen 214 -----------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-----PDDQHTGAITQVRYSSTGSLYV 277 (430)
T ss_pred -----------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----cccccccceeEEEecCCccEEE
Confidence 345679999999999999999999999999999887754432 3348999999999999999999
Q ss_pred EEECCCeEEEEECCCCceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC--C---CeEE
Q 005656 269 SAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT--D---RITD 340 (685)
Q Consensus 269 s~s~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~--~---~I~~ 340 (685)
+++.||.|++||--+++++.++.. ++.|.+..|..+++++++.+.|..+++|.+.+++++.++.|.. + --+.
T Consensus 278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtq 357 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQ 357 (430)
T ss_pred EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhh
Confidence 999999999999988888887753 3789999999999999999999999999999999999987641 1 2345
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeEEe--eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 341 FCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 341 l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
..|+....|++.-. ..+.+.-||.+++..+..+. +.+.+..+.-||.+.-+.+++.|- .+++|--+
T Consensus 358 AvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~-raRFWyrr 426 (430)
T KOG0640|consen 358 AVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF-RARFWYRR 426 (430)
T ss_pred hhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc-eeeeeeec
Confidence 56887778887665 45779999999987776554 555699999999999999999886 99999643
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.9e-30 Score=251.73 Aligned_cols=297 Identities=17% Similarity=0.253 Sum_probs=235.2
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC----eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~ 76 (685)
|+..|+++++.|.|. .+++|+.|.+|++||+... +..+.+...-...|.++.|++.|..|++.+.....+++|-+
T Consensus 166 gtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 566799999999998 9999999999999999753 23444444556689999999999988888888899999866
Q ss_pred CCC--------CCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656 77 TTD--------GDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 147 (685)
Q Consensus 77 ~~~--------~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (685)
... .-.+-+..-+||...++|.+|+|+ ...+++++.||++|+|++...+.....-.
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik--------------- 309 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK--------------- 309 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe---------------
Confidence 531 011112334689999999999997 45789999999999999976653222110
Q ss_pred ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656 148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 227 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 227 (685)
.++..+...+++.|+|+++|+.+++|+.||.|.
T Consensus 310 -----------------------------------------------~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ 342 (641)
T KOG0772|consen 310 -----------------------------------------------TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ 342 (641)
T ss_pred -----------------------------------------------eccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence 001114566789999999999999999999999
Q ss_pred EEECCCCccccccccccccccCCCCc--CEEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEee---cCCceeEEEE
Q 005656 228 RFNLQSGISRGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWE---VGCSLVKIVY 301 (685)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~---~~~~i~~~~~ 301 (685)
+|+..+......+. ...+|.. .|+||.|+++|++|++-|.|+++++||++..+ ++.... ...+-+.++|
T Consensus 343 ~W~~~~~~v~p~~~-----vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 343 IWDKGSRTVRPVMK-----VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred eeecCCcccccceE-----eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcccc
Confidence 99986655444432 2337877 99999999999999999999999999998643 333322 2367789999
Q ss_pred eecCCEEEEEeC------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 302 HRVNGLLATVAD------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 302 ~~~~~~l~~~~~------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
+|+.++|++|.. .|.+.+||..+...+.++.-.+..|..+.|+|.-+.|..|+.||+++||=-+
T Consensus 418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 418 SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 999999999864 4689999999999999988778889999999988889999999999998543
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-29 Score=253.45 Aligned_cols=275 Identities=17% Similarity=0.275 Sum_probs=238.7
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEe
Q 005656 8 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF 87 (685)
Q Consensus 8 l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~ 87 (685)
+.|+..+ .||+|. ...|++|+..++....... .+...|+++.|+++|.+|++|..+|.|.|||.... +.++.
T Consensus 183 ldWss~n--~laVal-g~~vylW~~~s~~v~~l~~-~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~----k~~~~ 254 (484)
T KOG0305|consen 183 LDWSSAN--VLAVAL-GQSVYLWSASSGSVTELCS-FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ----KKTRT 254 (484)
T ss_pred hhcccCC--eEEEEe-cceEEEEecCCCceEEeEe-cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc----ccccc
Confidence 5677543 677775 4579999999998776666 45899999999999999999999999999998877 55566
Q ss_pred ccc-CCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656 88 RSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 166 (685)
Q Consensus 88 ~~~-h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (685)
..+ |...|-+++|. +..+.+|+.||.|..+|++..+.....
T Consensus 255 ~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~------------------------------------ 296 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST------------------------------------ 296 (484)
T ss_pred ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh------------------------------------
Confidence 667 99999999998 568899999999999999766543220
Q ss_pred CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656 167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER 246 (685)
Q Consensus 167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~ 246 (685)
...|...|..+.|+++++++++|+.|+.+.+||.........+.
T Consensus 297 -------------------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~----- 340 (484)
T KOG0305|consen 297 -------------------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT----- 340 (484)
T ss_pred -------------------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-----
Confidence 12788999999999999999999999999999997766666665
Q ss_pred ccCCCCcCEEEEEEcCC-CCEEEEEE--CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE--eCCCeEEEEE
Q 005656 247 SNYAHNGEVVGVACDST-NTLMISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFD 321 (685)
Q Consensus 247 ~~~~h~~~v~~l~~~~~-~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~I~i~d 321 (685)
.|...|..++|+|- ...||+|+ .|++|++||..++..+..+...+.|..+.|++..+-|+++ ..++.|.||+
T Consensus 341 ---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~ 417 (484)
T KOG0305|consen 341 ---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWK 417 (484)
T ss_pred ---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence 89999999999995 46788875 7999999999999999999999999999999999866654 4577999999
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656 322 VVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 322 ~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~ 367 (685)
..+.+.+..+.+|..+|..+++||||..+++|+.|.++++|++-..
T Consensus 418 ~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 418 YPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999999999999998764
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-28 Score=223.12 Aligned_cols=281 Identities=15% Similarity=0.259 Sum_probs=240.7
Q ss_pred EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC--CCce
Q 005656 39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ--DRAF 116 (685)
Q Consensus 39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~--dg~i 116 (685)
+.+. ...+.|.++.|+++|.+|++++.|.++++||...+ +.++++..+...|..++|......++.++. |.+|
T Consensus 8 k~f~-~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g----~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 8 KVFR-ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG----KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccc-cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC----ceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 3444 45778999999999999999999999999998887 778888888889999999887777777776 8899
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
|..++.+.+.++.+.
T Consensus 83 ryLsl~dNkylRYF~----------------------------------------------------------------- 97 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFP----------------------------------------------------------------- 97 (311)
T ss_pred EEEEeecCceEEEcC-----------------------------------------------------------------
Confidence 999999998877775
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656 197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 276 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 276 (685)
+|...|.+++.+|-+..+++++.|++|++||++...+...+. ...-..++|+|.|-++|++...+.|
T Consensus 98 ---GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----------~~~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 98 ---GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN----------LSGRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred ---CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe----------cCCCcceeECCCCcEEEEecCCCeE
Confidence 899999999999999999999999999999999877766542 2334467999999999999877799
Q ss_pred EEEECCC--CceEEEeec----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCe---EEEEEcCCC
Q 005656 277 KVWDFKG--RDLKSRWEV----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI---TDFCFSEDG 347 (685)
Q Consensus 277 ~iwd~~~--~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I---~~l~~spdg 347 (685)
++||++. ..+..++.. ....+.+.|+|+|++++.+...+.+++.|.-+|....++.++...- ...+|+||+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 9999985 344444443 3778999999999999999999999999999999999998876543 577899999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 348 KWLLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 348 ~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+++++|+.||+|.+|++.+|..+..+... .++.++.|+|.-..+++++ . .+-+|-
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s-~l~fw~ 301 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--S-NLVFWL 301 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--c-eEEEEe
Confidence 99999999999999999999999999874 4599999999888888774 3 788885
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7e-29 Score=225.97 Aligned_cols=269 Identities=20% Similarity=0.332 Sum_probs=219.3
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 81 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~ 81 (685)
+.|.+++|||....+++.|+.||+|++|+++. |.........|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~--- 104 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG--- 104 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC---
Confidence 57999999996665888999999999999987 56665555589999999999999999999999999999999886
Q ss_pred CceeEecccCCCCCeEEEEecCCC--EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656 82 PRLLRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 159 (685)
Q Consensus 82 ~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (685)
+ ......|.++|.++.|-+... .|++||.|.+|+.||++....+..+.
T Consensus 105 -Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~---------------------------- 154 (347)
T KOG0647|consen 105 -Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ---------------------------- 154 (347)
T ss_pred -C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee----------------------------
Confidence 2 345568999999999988654 89999999999999998776665552
Q ss_pred ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656 160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 239 (685)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~ 239 (685)
.+..+.++.+ -...+++++.+..|.+|+++++.....
T Consensus 155 -----------------------------------------LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k 191 (347)
T KOG0647|consen 155 -----------------------------------------LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFK 191 (347)
T ss_pred -----------------------------------------ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhh
Confidence 2233333332 235789999999999999987765433
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce--EEEeecC----------CceeEEEEeecCCE
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVG----------CSLVKIVYHRVNGL 307 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~----------~~i~~~~~~~~~~~ 307 (685)
.. ...-.-.++|++..++....+.|+.+|.+.+..+..+.. -.++..| ..|.+++|+|.-..
T Consensus 192 ~~------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt 265 (347)
T KOG0647|consen 192 RI------ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT 265 (347)
T ss_pred hh------cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce
Confidence 21 113445789999999988889999999999999887622 2223322 35788999999999
Q ss_pred EEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 308 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~ 353 (685)
|++++.||++.+||-+....+.+...|..+|++.+|+.+|.++|-+
T Consensus 266 lvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 266 LVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999888888888999999999999999988855
No 79
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.8e-29 Score=219.60 Aligned_cols=244 Identities=18% Similarity=0.287 Sum_probs=217.4
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
+.++.+..|.++|..+.|+-+|+|.++++.|++|++|+...+..++++.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs------------------------------- 56 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS------------------------------- 56 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-------------------------------
Confidence 3566778999999999999999999999999999999998888777765
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
+|...|..++.+.|...+++|+.|..+.+||+.+|+..+.+.
T Consensus 57 -------------------------------------ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r- 98 (307)
T KOG0316|consen 57 -------------------------------------GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR- 98 (307)
T ss_pred -------------------------------------CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc-
Confidence 788899999999999999999999999999999999998886
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC--ceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR--DLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
+|.+.|+.+.|+.+...+++|+.|.++++||.++. ++++.+.. ...|.++... +..+++|+.||+++.
T Consensus 99 -------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 99 -------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred -------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence 99999999999999999999999999999999865 45665543 3667777765 678999999999999
Q ss_pred EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc---eEEEEEcCCCCeEEEEEe
Q 005656 320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAHV 396 (685)
Q Consensus 320 ~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~---v~~v~~spdg~~Lat~~~ 396 (685)
||++.|+...-.-+| +|++++||+||+.++.++.|+++++.|-.+|+++..+++|.. -...+++.....+++|+.
T Consensus 170 ydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSE 247 (307)
T KOG0316|consen 170 YDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE 247 (307)
T ss_pred EEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccC
Confidence 999999877666554 799999999999999999999999999999999999988765 567788888899999999
Q ss_pred CCCeEEEEEcC
Q 005656 397 DQNGVYLWVNR 407 (685)
Q Consensus 397 d~~~I~lW~~~ 407 (685)
|| .|++|++-
T Consensus 248 DG-~Vy~wdLv 257 (307)
T KOG0316|consen 248 DG-KVYFWDLV 257 (307)
T ss_pred Cc-eEEEEEec
Confidence 98 99999853
No 80
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-27 Score=245.26 Aligned_cols=377 Identities=13% Similarity=0.167 Sum_probs=298.4
Q ss_pred EEEEEEccCC-CCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656 5 VTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 5 V~~l~fspdg-~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~ 83 (685)
|+++ ++|.- -+-++.|+..|.+.+|++.+++.+.+++ ++...|+++.=+|--..++.|..+|+|.++++..+ +
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d----k 235 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD----K 235 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEec-ccccceeEeccCCcceEEEEeccCceEEEEEcccC----c
Confidence 6666 45542 1247789999999999999999999999 89999999999999899999999999999999887 7
Q ss_pred eeEecccCCCCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 84 LLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 84 ~~~~~~~h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
.+..++...++|++++|..||+.++ +|+..|.+.+||++..+........+... ....
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~s---------------------v~~~ 294 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGS---------------------VTGA 294 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCC---------------------cccc
Confidence 7777765569999999999987555 55666999999998877665553222100 0011
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYL 241 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~ 241 (685)
..-....++.....+..+++|-.....-..+.++...+|..+..|+.|. .+|.++..+..|++.+.|++........+.
T Consensus 295 ~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~ 374 (910)
T KOG1539|consen 295 TFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELG 374 (910)
T ss_pred eecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhc
Confidence 1122334555556667888887776666677778888999999999988 688889999888888777653211110000
Q ss_pred c--------------------cc-------------------------------------------ccccCCCCcCEEEE
Q 005656 242 D--------------------MS-------------------------------------------ERSNYAHNGEVVGV 258 (685)
Q Consensus 242 ~--------------------~~-------------------------------------------~~~~~~h~~~v~~l 258 (685)
. .+ ..........++++
T Consensus 375 ~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av 454 (910)
T KOG1539|consen 375 QLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAV 454 (910)
T ss_pred ccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEE
Confidence 0 00 00001123678999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCceEEEe----ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC
Q 005656 259 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW----EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 334 (685)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h 334 (685)
+.++.|++.+.|...|+|.+|++++|-....+ .+..+|+.++...-++.+++++.+|.+.+||......+..++ -
T Consensus 455 ~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l 533 (910)
T KOG1539|consen 455 CVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-L 533 (910)
T ss_pred EEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-c
Confidence 99999999999999999999999999888877 466999999999999999999999999999999988887776 4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656 335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 410 (685)
Q Consensus 335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~ 410 (685)
...++++..+.....++.+..|-.|+++|+.+.+.++.+.+|+. |++++|||||++|++++.|+ +|++||.....
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-tIr~wDlpt~~ 609 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-TIRTWDLPTGT 609 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-cEEEEeccCcc
Confidence 45688889988888999999999999999999999999997766 99999999999999999998 99999976543
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.3e-28 Score=236.61 Aligned_cols=274 Identities=18% Similarity=0.282 Sum_probs=227.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee-EEee----------------cccccCeeEEEEeCCCcEEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-SVIR----------------EAHDNAIISLHFFANEPVLMS 63 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~-~~~~----------------~~h~~~V~~l~~sp~~~~l~s 63 (685)
|+-+|+||+++||++ +.++++.+|+|.=|++.+++.. ..+. .+|...|.+++.++||++|++
T Consensus 141 H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred ccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 778999999999999 8999999999999999887632 1111 278899999999999999999
Q ss_pred ecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 143 (685)
Q Consensus 64 ~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 143 (685)
|+.|..|.||+.++. ..+..+.+|.+.|.+++|......+++++.|+++++|++.......
T Consensus 220 gg~d~~v~Iw~~~t~----ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve--------------- 280 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTL----EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE--------------- 280 (479)
T ss_pred cCCCceEEEecCccc----chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH---------------
Confidence 999999999999887 6677789999999999999888899999999999999985432211
Q ss_pred ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 005656 144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223 (685)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 223 (685)
T Consensus 281 -------------------------------------------------------------------------------- 280 (479)
T KOG0299|consen 281 -------------------------------------------------------------------------------- 280 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEee
Q 005656 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 303 (685)
Q Consensus 224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~ 303 (685)
..++|.+.|.+|.....++.+-+|+.|+++++|++.....+....+.+.+-|++|-.
T Consensus 281 -----------------------tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In 337 (479)
T KOG0299|consen 281 -----------------------TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN 337 (479)
T ss_pred -----------------------HHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec
Confidence 123899999999988888877777799999999996554444444556888888874
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCeeEEEEec-C-----------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----
Q 005656 304 VNGLLATVADDLVIRLFDVVALRMVRKFEG-H-----------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA---- 367 (685)
Q Consensus 304 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h-----------~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~---- 367 (685)
...+++|+++|.|.+|++.+.+++.+... | ...|++++..|...++++||.+|.|++|-+..+
T Consensus 338 -~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 338 -DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred -ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 56788999999999999999988877641 2 227999999999999999999999999999887
Q ss_pred ceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656 368 RQIDAIHVDVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 368 ~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
.++..+...+-|++++|+++|+++++|....
T Consensus 417 ~~l~~ls~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 417 NLLYSLSLVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred ceeeecccccEEEEEEEccCCCEEEEecccc
Confidence 4555666666699999999999877775443
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-28 Score=223.71 Aligned_cols=265 Identities=18% Similarity=0.264 Sum_probs=221.0
Q ss_pred EEEEEeCCCcEEEEeCCCCe------------eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 17 LLASGASSGVISIWNLEKRR------------LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~------------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
-+++|++...|.-+++.-.. ....+. +|.++|++++.+ ++++|+||.|-+|+|||+... ..
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~-aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~----~q 75 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFS-AHAGSITALAVS--GPYVASGSSDETIHIYDMRKR----KQ 75 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeecccccc-ccccceeEEEec--ceeEeccCCCCcEEEEeccch----hh
Confidence 36788888888877764321 133344 899999999986 899999999999999999887 55
Q ss_pred eEecccCCCCCeEEEEecCCC--EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
+..+-.|.+.|+++.|+++-. +|++|+.||.|.+|++........+.
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK------------------------------- 124 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK------------------------------- 124 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-------------------------------
Confidence 566668999999999999754 89999999999999987766555543
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
.|...|+.++++|.|+..++.+.|+.++.||+-.|+.-....-
T Consensus 125 -------------------------------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L 167 (362)
T KOG0294|consen 125 -------------------------------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL 167 (362)
T ss_pred -------------------------------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc
Confidence 6778899999999999999999999999999998876554421
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 322 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~ 322 (685)
.+. -+.+.|+|.|.+++.++. ..|-+|.+.+..+...+..+..+.++.|. ++..|++|.+|+.|.+||.
T Consensus 168 -------~~~--at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ 236 (362)
T KOG0294|consen 168 -------KNK--ATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDT 236 (362)
T ss_pred -------CCc--ceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEecc
Confidence 232 334999999998888876 46899999988887777777677777775 4678999999999999999
Q ss_pred CCCeeEEEEecCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCC
Q 005656 323 VALRMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 323 ~~~~~~~~~~~h~~~I~~l~~--spdg~~l~s~s~Dg~I~iwd~~~~ 367 (685)
++..+...+.+|..+|.++.+ .|++.+|+|+|.||.|+|||+...
T Consensus 237 ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 237 DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999999999999999985 567889999999999999999876
No 83
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.9e-29 Score=228.46 Aligned_cols=289 Identities=19% Similarity=0.321 Sum_probs=247.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe-----
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF----- 75 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~----- 75 (685)
|++.|+.++-..... ++.+++.|.+.+||.++++.++..+. ||.+.|+++.|++.+.++++++.|++..||..
T Consensus 147 HkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 147 HKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred cccceeeehhhcCCc-ceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 788899998876544 99999999999999999999999998 99999999999999999999999999999962
Q ss_pred -cCC----------------------------C--CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC
Q 005656 76 -DTT----------------------------D--GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 124 (685)
Q Consensus 76 -~~~----------------------------~--~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~ 124 (685)
... + ....++..+.+|.+.|.+..|...|+.+++++.|++..+||++++
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg 304 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG 304 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence 110 0 012345667899999999999999999999999999999999999
Q ss_pred ceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCC
Q 005656 125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA 204 (685)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 204 (685)
..+..+. +|...
T Consensus 305 e~v~~Lt--------------------------------------------------------------------GHd~E 316 (481)
T KOG0300|consen 305 EVVNILT--------------------------------------------------------------------GHDSE 316 (481)
T ss_pred ceecccc--------------------------------------------------------------------Ccchh
Confidence 8766654 78888
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 284 (685)
Q Consensus 205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (685)
.+.++-+|..+.+++.+.|.+.++||.+........ +.+|...|+++.|..+. .+++|+.|.+|++||+++.
T Consensus 317 LtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~V-------FQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 317 LTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAV-------FQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred ccccccCCcceEEEEeccCceeEeccchhhcceeee-------ecccccceeEEEEecCC-ceeecCCCceEEEeeeccc
Confidence 999999999999999999999999999855443322 23999999999998765 5899999999999999875
Q ss_pred -ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE----EEecCCCCeEEEEEcCCC--CEEEEEeCCC
Q 005656 285 -DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR----KFEGHTDRITDFCFSEDG--KWLLSSGMDG 357 (685)
Q Consensus 285 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~----~~~~h~~~I~~l~~spdg--~~l~s~s~Dg 357 (685)
.++.++...++++.++.+..+..+|.-.++..|++||+...+..+ .-.+|...|+|++|..+. .-|++++-|.
T Consensus 389 RsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR 468 (481)
T KOG0300|consen 389 RSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDR 468 (481)
T ss_pred cCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccc
Confidence 578889999999999999988899999999999999998665433 235899999999997643 3588999999
Q ss_pred cEEEEEcCCC
Q 005656 358 SLRIWDVILA 367 (685)
Q Consensus 358 ~I~iwd~~~~ 367 (685)
.+.=|.+...
T Consensus 469 ~v~gW~in~p 478 (481)
T KOG0300|consen 469 MVAGWKINTP 478 (481)
T ss_pred eeeeeEeccc
Confidence 9999998754
No 84
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.7e-27 Score=250.26 Aligned_cols=265 Identities=15% Similarity=0.206 Sum_probs=203.6
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee-------------EEeecccccCeeEEEEeC-CCcEEEEecCCCc
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-------------SVIREAHDNAIISLHFFA-NEPVLMSASADNS 69 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~-------------~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~ 69 (685)
.|+....++|+. .+++++.+.....|+...+..+ ..+. +|.+.|++++|+| ++.+|++|+.|++
T Consensus 22 ~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 22 NVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred ccccccccCCCC-CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 355566777866 4566666666677775544322 1344 8999999999999 8889999999999
Q ss_pred EEEEEecCCCC---CCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 70 IKMWIFDTTDG---DPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 70 v~iWd~~~~~~---~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
|++|++..... ....+..+.+|...|.+++|+|++ ++|++++.|++|++||+.+++....+
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l--------------- 164 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI--------------- 164 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---------------
Confidence 99999976421 123566778999999999999985 68999999999999998654322111
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW 225 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 225 (685)
T Consensus 165 -------------------------------------------------------------------------------- 164 (493)
T PTZ00421 165 -------------------------------------------------------------------------------- 164 (493)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC--ceeEEEEee
Q 005656 226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHR 303 (685)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~ 303 (685)
..|...|.+++|+|++.+|++++.||+|++||+++++.+..+..+. ....+.|.+
T Consensus 165 -----------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 165 -----------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred -----------------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence 1688889999999999999999999999999999998887776553 345678888
Q ss_pred cCCEEEEEe----CCCeEEEEEcCCCe-eEEEEecC-CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeEEeec
Q 005656 304 VNGLLATVA----DDLVIRLFDVVALR-MVRKFEGH-TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVD 376 (685)
Q Consensus 304 ~~~~l~~~~----~dg~I~i~d~~~~~-~~~~~~~h-~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~~~ 376 (685)
++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++++ .|+.|++||+.+++++......
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~ 301 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS 301 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc
Confidence 888776654 47899999998754 44444333 34566678999999999887 5999999999999887766543
Q ss_pred --cceEEEEEcCCC
Q 005656 377 --VSITALSLSPNM 388 (685)
Q Consensus 377 --~~v~~v~~spdg 388 (685)
.++..++|.|.-
T Consensus 302 s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 302 SVEPHKGLCMMPKW 315 (493)
T ss_pred CCCCCcceEecccc
Confidence 348889998853
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=219.34 Aligned_cols=280 Identities=16% Similarity=0.267 Sum_probs=225.6
Q ss_pred EEEEEccCCCCEEEEEe-------CCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeCCC-cEEEEecCCCcEEEEEec
Q 005656 6 TALAFSSDGQPLLASGA-------SSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANE-PVLMSASADNSIKMWIFD 76 (685)
Q Consensus 6 ~~l~fspdg~~~latg~-------~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~ 76 (685)
.++.|||--...||++. ..|.+.|-++...+-+.... ..-.+.+..++|+++. +.+++++.||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 47889995433444432 46899999997444333332 1356789999999964 588999999999999954
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
... .++..++.|...|.++.|++- +..+++++.|++|++|+...+..+.++.
T Consensus 92 ~~s---~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~------------------------ 144 (311)
T KOG0277|consen 92 MPS---KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN------------------------ 144 (311)
T ss_pred CCC---cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec------------------------
Confidence 443 577888999999999999984 6678888999999999987776655543
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCC
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSG 234 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~ 234 (685)
+|...|....|+| .++.+++++.||.+++||++..
T Consensus 145 --------------------------------------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 145 --------------------------------------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred --------------------------------------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence 7788899999999 6789999999999999999876
Q ss_pred ccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCc-eEEEeec-CCceeEEEEeecCC-EEEE
Q 005656 235 ISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRD-LKSRWEV-GCSLVKIVYHRVNG-LLAT 310 (685)
Q Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~-~~~~~~~-~~~i~~~~~~~~~~-~l~~ 310 (685)
.....+. .|...+.++.|+.-+ ..++||+.|+.|+.||+++.+ ++..+.. .-.|..+.|+|... +||+
T Consensus 181 gk~~~i~--------ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaS 252 (311)
T KOG0277|consen 181 GKFMSIE--------AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLAS 252 (311)
T ss_pred CceeEEE--------eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhh
Confidence 5544444 899999999998754 678999999999999998643 4555544 47899999999765 9999
Q ss_pred EeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 005656 311 VADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 311 ~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~ 364 (685)
++.|-+++|||...+ ..+.+...|+.-|..+.||+ ++.++|+++.|+.++||+-
T Consensus 253 asYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 253 ASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999854 55667778999999999998 6679999999999999983
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=202.47 Aligned_cols=284 Identities=18% Similarity=0.268 Sum_probs=215.5
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCC------CC--------eeeEEeecccccCeeEEEEeCCCcEEEEecCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLE------KR--------RLQSVIREAHDNAIISLHFFANEPVLMSASADN 68 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~------~~--------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~ 68 (685)
..|.+++|+|.|. +.|+|+...+.+|.-.. .+ .....-...|.+.|+|.+|+|+|.++++|+.|.
T Consensus 33 qairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 33 QAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 4689999999999 99999999988887432 11 111111237899999999999999999999999
Q ss_pred cEEEEEecCCCCCC-ceeEecccCCCCCeEEEEecC----CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656 69 SIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 143 (685)
Q Consensus 69 ~v~iWd~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 143 (685)
+|++.-++...... -.-..+.-|.+.|..++|..+ |..|++++ .|..++|
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-agdc~iy------------------------ 166 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-AGDCKIY------------------------ 166 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC-CCcceEE------------------------
Confidence 99998776653211 111234568888888888654 34444443 2222222
Q ss_pred ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 005656 144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223 (685)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 223 (685)
T Consensus 167 -------------------------------------------------------------------------------- 166 (350)
T KOG0641|consen 167 -------------------------------------------------------------------------------- 166 (350)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--------Cc
Q 005656 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------CS 295 (685)
Q Consensus 224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~ 295 (685)
+-|-..|+....+. +|++.|.++- +-+|-.+++|+.|.+|++||++-...+.++... +.
T Consensus 167 ----~tdc~~g~~~~a~s--------ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 167 ----ITDCGRGQGFHALS--------GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred ----EeecCCCCcceeec--------CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence 22233333333222 7888887763 335778999999999999999988877776532 67
Q ss_pred eeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----ceee
Q 005656 296 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA----RQID 371 (685)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~----~~i~ 371 (685)
+..++..|.|++|++|-.|.+..+||++.++.++.|..|...|.++.|||...|+++++.|..|++-|+... -.+.
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~ 313 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM 313 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence 899999999999999999999999999999999999999999999999999999999999999999998632 1222
Q ss_pred EE-eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 372 AI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 372 ~~-~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
.+ .+...+..+.|+|..-.+++.+.|. ++.+|..
T Consensus 314 vv~ehkdk~i~~rwh~~d~sfisssadk-t~tlwa~ 348 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQDFSFISSSADK-TATLWAL 348 (350)
T ss_pred EEEeccCceEEEEecCccceeeeccCcc-eEEEecc
Confidence 23 3344588899999998899999997 9999974
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=218.88 Aligned_cols=291 Identities=20% Similarity=0.264 Sum_probs=215.2
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee--eEEee-cccccCeeEEEEeCCCc-EEEEecCCCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL--QSVIR-EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~--~~~~~-~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~ 76 (685)
|.+.|++++|+.||+ .|||++.|++|+||++..... .+.++ +---+.-+.+.|+||-+ .+++.-..+++++|.+.
T Consensus 85 H~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred cCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 889999999999999 999999999999999876321 11111 01123457899999987 44555566789999876
Q ss_pred CCCC-CC-------ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656 77 TTDG-DP-------RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 148 (685)
Q Consensus 77 ~~~~-~~-------~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (685)
.... .. ..+.....|..++..+-...++++|++++.|..|.+|++. ++....+.
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id----------------- 225 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID----------------- 225 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec-----------------
Confidence 5421 11 1112334577788888888889999999999999999997 65554443
Q ss_pred cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656 149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER 228 (685)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~ 228 (685)
.....-...++||||+++++++-.-.|.+
T Consensus 226 ---------------------------------------------------tnq~~n~~aavSP~GRFia~~gFTpDVkV 254 (420)
T KOG2096|consen 226 ---------------------------------------------------TNQSSNYDAAVSPDGRFIAVSGFTPDVKV 254 (420)
T ss_pred ---------------------------------------------------cccccccceeeCCCCcEEEEecCCCCceE
Confidence 22334567789999999999999999999
Q ss_pred EECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-------ceEEEee-----cCCce
Q 005656 229 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------DLKSRWE-----VGCSL 296 (685)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~-----~~~~i 296 (685)
|.+--++.-............+|...|..++|+++.+.+++.+.||++++||++-. +.+.+.. .++..
T Consensus 255 wE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p 334 (420)
T KOG2096|consen 255 WEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEP 334 (420)
T ss_pred EEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCc
Confidence 98642211000000111134599999999999999999999999999999998621 2222221 12445
Q ss_pred eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
..+..+|+|+.||.+.. ..+++|..++++..-+++ .|...|++++|+++|+++++++ |..++++.
T Consensus 335 ~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 335 VRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred eEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 58999999999887653 579999999998777765 5999999999999999999998 67788876
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=6.1e-28 Score=234.46 Aligned_cols=308 Identities=15% Similarity=0.231 Sum_probs=235.7
Q ss_pred eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656 37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDRA 115 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~dg~ 115 (685)
+...++ +|+..|.++++.|.|..|+|||.|.+|++||+...+...+..+.+ ......|.+++|++.|..|++.+....
T Consensus 159 hEi~l~-hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 159 HEIQLK-HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred ceEecc-CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 344555 889999999999999999999999999999998776544444333 234568999999999999999999999
Q ss_pred eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656 116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 195 (685)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 195 (685)
.+++|-..... .++..+.. ++-++
T Consensus 238 akl~DRdG~~~-~e~~KGDQ---------------------------------------------YI~Dm---------- 261 (641)
T KOG0772|consen 238 AKLLDRDGFEI-VEFSKGDQ---------------------------------------------YIRDM---------- 261 (641)
T ss_pred eeEEccCCcee-eeeeccch---------------------------------------------hhhhh----------
Confidence 99998543332 22221110 11111
Q ss_pred cCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656 196 RPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 274 (685)
Q Consensus 196 ~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg 274 (685)
....+|...++|.+|+|.. ..+++++.||++++||+...+....... .+...+..-.++.++|++++..|++|+.||
T Consensus 262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik--~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK--TKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe--eccCCCcccCceeeecCCCcchhhhcccCC
Confidence 1122788889999999965 5788999999999999987654333321 111124556789999999999999999999
Q ss_pred eEEEEECCCCceE--EEe--ec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCC--CCeEEEEEcC
Q 005656 275 DIKVWDFKGRDLK--SRW--EV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHT--DRITDFCFSE 345 (685)
Q Consensus 275 ~i~iwd~~~~~~~--~~~--~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~--~~I~~l~~sp 345 (685)
.|.+|+..+.... ..+ .| +..|+++.|+++|++|++-+.|+++++||++.. +++....+-. -+-++++|||
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence 9999998543221 111 12 258999999999999999999999999999875 5666655533 3467899999
Q ss_pred CCCEEEEEeC------CCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656 346 DGKWLLSSGM------DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW 404 (685)
Q Consensus 346 dg~~l~s~s~------Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW 404 (685)
+.++|++|+. .|++.+||..+...+..+..... |..+.|+|.-+.+.+++.|| +++++
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG-~~~vy 484 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG-TAHVY 484 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC-ceEEE
Confidence 9999999853 47899999999999988876655 99999999999999999998 78876
No 89
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=3.9e-26 Score=221.44 Aligned_cols=369 Identities=14% Similarity=0.193 Sum_probs=279.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCC--------cEEEEeCCCCeeeEEeecccccCeeEEEEeCC--CcEEEEe--cCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSG--------VISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSA--SADN 68 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg--------~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~--s~D~ 68 (685)
|...|-|++.+||.- .+|+|-..| .+++||..+-..+..+- .....|.|++|++- |.+|... +.+.
T Consensus 103 H~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g-~f~~GV~~vaFsk~~~G~~l~~vD~s~~h 180 (626)
T KOG2106|consen 103 HNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIG-FFDRGVTCVAFSKINGGSLLCAVDDSNPH 180 (626)
T ss_pred CCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeeeeec-cccccceeeeecccCCCceEEEecCCCcc
Confidence 778899999999976 778775444 59999988888787776 67788999999983 4455544 4466
Q ss_pred cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 148 (685)
Q Consensus 69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (685)
.+.+||+..+. .....+.....|....|+|.+..++....-|.+.+|+.+.+...+....-. ..+.
T Consensus 181 ~lSVWdWqk~~----~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fe----------k~ek 246 (626)
T KOG2106|consen 181 MLSVWDWQKKA----KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFE----------KREK 246 (626)
T ss_pred ccchhhchhhh----ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccc----------cccc
Confidence 78999998763 333334456778899999976666666667899999998887665542110 0000
Q ss_pred cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656 149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER 228 (685)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~ 228 (685)
..+.++... .+.-+..+..++.+.+|+.......+... .|++.|.+++.-.+|..+- |+.|..|..
T Consensus 247 ---k~Vl~v~F~------engdviTgDS~G~i~Iw~~~~~~~~k~~~----aH~ggv~~L~~lr~GtllS-GgKDRki~~ 312 (626)
T KOG2106|consen 247 ---KFVLCVTFL------ENGDVITGDSGGNILIWSKGTNRISKQVH----AHDGGVFSLCMLRDGTLLS-GGKDRKIIL 312 (626)
T ss_pred ---eEEEEEEEc------CCCCEEeecCCceEEEEeCCCceEEeEee----ecCCceEEEEEecCccEee-cCccceEEe
Confidence 112221111 12235566778999999997665555443 7899999999999998777 999999999
Q ss_pred EECCCCccccccc---------------------------------cccccccCCCCcCEEEEEEcCCCCEEEEEECCCe
Q 005656 229 FNLQSGISRGSYL---------------------------------DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 275 (685)
Q Consensus 229 ~d~~~~~~~~~~~---------------------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~ 275 (685)
||-. -+.++... ........+|.....+++.+|+...+++++.|+.
T Consensus 313 Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~ 391 (626)
T KOG2106|consen 313 WDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH 391 (626)
T ss_pred cccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce
Confidence 9832 11111110 0001123478888999999999999999999999
Q ss_pred EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 005656 276 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355 (685)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~ 355 (685)
+++|+ ..++..+.....+..++.|+|.| .+|+|...|...+.|.++...+..-.. +.+++++.|+|+|.+||.|+.
T Consensus 392 v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 392 VRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred EEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecC
Confidence 99999 77888888888999999999999 999999999999999999777666555 899999999999999999999
Q ss_pred CCcEEEEEcCCC-ceeeEEe--eccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 356 DGSLRIWDVILA-RQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 356 Dg~I~iwd~~~~-~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
|+.|+||.+..+ ....... ..++|+.+.||+|+++|.+-+.|- .|-.|.
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~-eiLyW~ 519 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY-EILYWK 519 (626)
T ss_pred CCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCce-EEEEEc
Confidence 999999998754 3333332 226699999999999999999886 899993
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.1e-28 Score=234.32 Aligned_cols=236 Identities=19% Similarity=0.320 Sum_probs=205.9
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~ 80 (685)
+..|+++.|..||+ +||+|...|.|+|||.++...+..+. +|+.+|..+.|+|.++ .+++|+.|+.+++||+++.
T Consensus 68 k~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-- 143 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-- 143 (487)
T ss_pred ccceeEEEeecCCe-EEEccCCcCcEEEeccccHHHHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCc--
Confidence 46789999999999 99999999999999988877888887 9999999999999655 7788888999999999887
Q ss_pred CCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecC-ceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
.....+.+|...|.|.+|+|- +..++|||.||.|++||++.. ....++
T Consensus 144 --~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el---------------------------- 193 (487)
T KOG0310|consen 144 --YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL---------------------------- 193 (487)
T ss_pred --EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe----------------------------
Confidence 445678899999999999996 558899999999999999876 333333
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
.|..+|..+.+-|.|..+++++. ..|++||+-+|....
T Consensus 194 -----------------------------------------nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 194 -----------------------------------------NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL 231 (487)
T ss_pred -----------------------------------------cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh
Confidence 67889999999999998887754 469999999665433
Q ss_pred ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEE
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 318 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~ 318 (685)
... ..|...|+|+.+..++..|++++.|+.|++||+.+.+.+..+..+++|.+++.+|++..+++|..||.+.
T Consensus 232 ~~~-------~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 232 TSM-------FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred hhh-------hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceee
Confidence 322 1599999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred EE
Q 005656 319 LF 320 (685)
Q Consensus 319 i~ 320 (685)
+-
T Consensus 305 ~r 306 (487)
T KOG0310|consen 305 IR 306 (487)
T ss_pred ee
Confidence 65
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3.5e-27 Score=216.01 Aligned_cols=268 Identities=15% Similarity=0.259 Sum_probs=218.5
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 81 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~ 81 (685)
+..|++|.|+|.+. .|++++.||++++||+....+...++ |..++.+++|.+ ...+++|+.||.|+.+|++++.
T Consensus 13 ~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-- 86 (323)
T ss_pred hhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEEecCCc--
Confidence 35699999999888 66677799999999999987777775 999999999987 4588999999999999999863
Q ss_pred CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
...+..|..+|.||.+++....+++||.|++|++||.+.......+
T Consensus 87 ---~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~------------------------------- 132 (323)
T KOG1036|consen 87 ---EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF------------------------------- 132 (323)
T ss_pred ---ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-------------------------------
Confidence 2344679999999999998889999999999999998763322222
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~ 241 (685)
.....|.++.. .|+.|++|+.+..+.+||+++.....+.
T Consensus 133 --------------------------------------d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~- 171 (323)
T KOG1036|consen 133 --------------------------------------DQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR- 171 (323)
T ss_pred --------------------------------------ccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh-
Confidence 12234555444 5789999999999999999986554322
Q ss_pred cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC----ceEEEeecC----------CceeEEEEeecCCE
Q 005656 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG----------CSLVKIVYHRVNGL 307 (685)
Q Consensus 242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~----------~~i~~~~~~~~~~~ 307 (685)
....-+-.++|+++.|++.-++.++.||.|.+=.++.. +....+..| .+|++++|+|-.+.
T Consensus 172 -----reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 172 -----RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred -----ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 11245668999999998888999999999988776654 222333322 68999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 005656 308 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355 (685)
Q Consensus 308 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~ 355 (685)
+|+|+.||.|.+||+.+.+.+..+..-...|..++|+.||..||.|+.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999999999888788999999999999998874
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.9e-28 Score=230.65 Aligned_cols=285 Identities=18% Similarity=0.286 Sum_probs=240.9
Q ss_pred ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecC
Q 005656 46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQD 124 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~ 124 (685)
.++|+++.|+|..++|++++.|++++||.++.... ..+..+.--..||.+.+|+|+|. .+++++.-..+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC--hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 47899999999999999999999999999987543 34555556678999999999998 8899999999999999776
Q ss_pred ceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCC
Q 005656 125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA 204 (685)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 204 (685)
+..+.-.. .......
T Consensus 291 k~~k~~~~-----------------------------------------------------------------~g~e~~~ 305 (514)
T KOG2055|consen 291 KVTKLKPP-----------------------------------------------------------------YGVEEKS 305 (514)
T ss_pred ccccccCC-----------------------------------------------------------------CCcccch
Confidence 54322110 0011345
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 284 (685)
Q Consensus 205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (685)
+....++++++++++.+..|.|.+....++..+..+ .-.+.|..++|+.+++.|++++.+|.|.+||++..
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN 376 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc
Confidence 678899999999999999999999999999998887 56789999999999999999999999999999999
Q ss_pred ceEEEeecCCce--eEEEEeecCCEEEEEeCCCeEEEEEcCC------CeeEEEEecCCCCeEEEEEcCCCCEEEEEe--
Q 005656 285 DLKSRWEVGCSL--VKIVYHRVNGLLATVADDLVIRLFDVVA------LRMVRKFEGHTDRITDFCFSEDGKWLLSSG-- 354 (685)
Q Consensus 285 ~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~I~i~d~~~------~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-- 354 (685)
.+++.+...+.+ +.++.++++.+||+|+..|.|.|||..+ .+++..+..-...|+++.|+||+++||.+|
T Consensus 377 ~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 377 SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV 456 (514)
T ss_pred ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc
Confidence 999988876555 5567779999999999999999999654 477777777788899999999999999877
Q ss_pred CCCcEEEEEcCCCceeeEEeeccc----eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 355 MDGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 355 ~Dg~I~iwd~~~~~~i~~~~~~~~----v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.+..+|+-.+++......+..... |+|++|||.|.+||.|..+| .|.+|.+.
T Consensus 457 ~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g-rv~l~kL~ 512 (514)
T KOG2055|consen 457 KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG-RVHLFKLH 512 (514)
T ss_pred cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC-ceeeEeec
Confidence 567899999999887777764432 99999999999999999887 99999753
No 93
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.4e-27 Score=249.05 Aligned_cols=273 Identities=21% Similarity=0.392 Sum_probs=238.6
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEe-cccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~ 122 (685)
.|...+.+..|. ..++++++.|++|++|+...+ ..+.. +.||.+.|++++|..-+.++++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~----~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG----YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccc----eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC
Confidence 367788899988 568999999999999998776 55555 89999999999998777899999999999999999
Q ss_pred cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656 123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 202 (685)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 202 (685)
++.+...+. +|.
T Consensus 280 sg~C~~~l~--------------------------------------------------------------------gh~ 291 (537)
T KOG0274|consen 280 TGECTHSLQ--------------------------------------------------------------------GHT 291 (537)
T ss_pred CCcEEEEec--------------------------------------------------------------------CCC
Confidence 999888774 566
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 282 (685)
..+.++... +..++.|+.|.+|++|+++++.....+. +|.++|.++..+ +.++++|+.||+|++||+.
T Consensus 292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~--------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR--------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEec--------cccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 777776654 4567778999999999999999888774 699999999997 7799999999999999999
Q ss_pred CCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005656 283 GRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 360 (685)
Q Consensus 283 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~ 360 (685)
+++++..+..+ ..|.++.+.+. ..+++|+.|+.|++||+.+. +++.++.+|.+-+..+.+ .+++|++++.|++|+
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIK 436 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEE
Confidence 99999998876 88999877755 89999999999999999999 999999999999977776 678999999999999
Q ss_pred EEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 361 IWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 361 iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
+||..++++++.+..+ ..|+++++. ...+++++.|+ .+++|+.+.
T Consensus 437 ~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~-~~~l~dl~~ 483 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDG-SVKLWDLRS 483 (537)
T ss_pred EeecccCceeeeeccCCcccEEEeecC--cceEEEEecCC-eeEEEeccc
Confidence 9999999999999884 558888886 45677777776 999998654
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=243.78 Aligned_cols=328 Identities=15% Similarity=0.219 Sum_probs=258.9
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCe------eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 7 ALAFSSDGQPLLASGASSGVISIWNLEKRR------LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
++..+..+..+|.||+.||.|++|++..-. ....++ .|.+.|+.++...+++.|+++|.|-+|++|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~- 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN- 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-
Confidence 444554444489999999999999986422 366777 899999999999999999999999999999887653
Q ss_pred CCceeEecccCCCCCeEEEE-ecCCCEEEEEeCCCceEEEEeecCce--eeEechhhHHHHHhhccccccccccCceeee
Q 005656 81 DPRLLRFRSGHSAPPLCIRF-YANGRHILSAGQDRAFRLFSVIQDQQ--SRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~-~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
.-+..++..|...|.|+++ .++...+++||-|+.|.+||+.++.. ...+...
T Consensus 107 -~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~------------------------ 161 (735)
T KOG0308|consen 107 -TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV------------------------ 161 (735)
T ss_pred -chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc------------------------
Confidence 3567778899999999999 88888999999999999999987743 1111100
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
-. .....++...+.+++.++.|..++.|+..+.+++||.+++..+
T Consensus 162 -------------t~----------------------~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki 206 (735)
T KOG0308|consen 162 -------------TV----------------------NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI 206 (735)
T ss_pred -------------cc----------------------ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce
Confidence 00 0000156788999999999999999999999999999999988
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCe
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLV 316 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~ 316 (685)
..+. +|+..|.++..+++|+.++++|.||+|++||+...+++.++..+ ..+.++..+|+-..+++|+.||.
T Consensus 207 mkLr--------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 207 MKLR--------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred eeee--------ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence 8775 99999999999999999999999999999999999999888765 66889999999999999999999
Q ss_pred EEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-------ce------------------e
Q 005656 317 IRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA-------RQ------------------I 370 (685)
Q Consensus 317 I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~-------~~------------------i 370 (685)
|+.=|+++. +....++ ...+|..+..+.+.+-+-+++.|+.|+-|...-. .+ -
T Consensus 279 i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~ 357 (735)
T KOG0308|consen 279 IYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPD 357 (735)
T ss_pred EEecccCCchhheEeec-CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCc
Confidence 999999985 3333333 5566777777654444466677888888865321 11 1
Q ss_pred eEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 371 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 371 ~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
..+.+..++...++-.|.+.++|=...| .+.+||.
T Consensus 358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~g-nv~lwDI 392 (735)
T KOG0308|consen 358 SVIPGGAAIKKHAMLNDKRHVLTKDAKG-NVALWDI 392 (735)
T ss_pred eeccCchhhhhhhhhcCcceEeeecCCC-CEEEEEe
Confidence 1122333355666777889999998887 8999984
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-27 Score=215.49 Aligned_cols=237 Identities=21% Similarity=0.312 Sum_probs=200.8
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc--EEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~D~~v~iWd~~~~ 78 (685)
|.++|+|++.+ |. ++|+|+.|-+|+|||+.+...+..+. .|.+.|+++.|.++-. .|++|+.||.|.+|+...-
T Consensus 42 H~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 42 HAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred cccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence 88999999997 56 99999999999999999999999998 8999999999999775 9999999999999986544
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
.++..+++|.+.|+.++.+|.|+.-++.+.|+.++.|++.+++....+.
T Consensus 118 ----~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~--------------------------- 166 (362)
T KOG0294|consen 118 ----ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN--------------------------- 166 (362)
T ss_pred ----EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec---------------------------
Confidence 8899999999999999999999999999999999999998887544442
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
.....+.+.|+|.|.+++++..++ |.+|.+.+.....
T Consensus 167 ------------------------------------------L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~ 203 (362)
T KOG0294|consen 167 ------------------------------------------LKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFR 203 (362)
T ss_pred ------------------------------------------cCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhh
Confidence 233345589999999999988775 8899888776655
Q ss_pred ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEE--eecCCEEEEEeCCC
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVY--HRVNGLLATVADDL 315 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~--~~~~~~l~~~~~dg 315 (685)
.+ .....+.++.|.. +..+++|+.|+.|.+||..+..+...+..+ ..|-.+.+ .|++.+|++++.||
T Consensus 204 ~i---------~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 204 EI---------ENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred hh---------hccccceeeeecC-CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence 54 2335677777764 567999999999999999988777766554 78888874 45677999999999
Q ss_pred eEEEEEcCCC
Q 005656 316 VIRLFDVVAL 325 (685)
Q Consensus 316 ~I~i~d~~~~ 325 (685)
.|+|||++..
T Consensus 274 ~I~vWd~~~~ 283 (362)
T KOG0294|consen 274 FIKVWDIDME 283 (362)
T ss_pred eEEEEEcccc
Confidence 9999999865
No 96
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.2e-26 Score=244.55 Aligned_cols=248 Identities=17% Similarity=0.247 Sum_probs=193.5
Q ss_pred EeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEEEEEecCCCCC----CceeEecccCCCCC
Q 005656 21 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDGD----PRLLRFRSGHSAPP 95 (685)
Q Consensus 21 g~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~----~~~~~~~~~h~~~v 95 (685)
|+.+|.|.+|+......+..+. +|.++|.+++|+|+ +.+|+||+.|++|++|++...... ...+..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 5567889999988877788887 99999999999997 789999999999999999764211 12344567999999
Q ss_pred eEEEEecCCCEE-EEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656 96 LCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 174 (685)
Q Consensus 96 ~~i~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (685)
.+++|+|++..+ ++++.|++|++||+.+++....+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i-------------------------------------------- 164 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI-------------------------------------------- 164 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE--------------------------------------------
Confidence 999999998764 68999999999999877644332
Q ss_pred cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcC
Q 005656 175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 254 (685)
Q Consensus 175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~ 254 (685)
.+...|.+++|+|+|+++++++.|+.|++||++++.....+. +|.+.
T Consensus 165 -------------------------~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~--------gH~g~ 211 (568)
T PTZ00420 165 -------------------------NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH--------IHDGG 211 (568)
T ss_pred -------------------------ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe--------cccCC
Confidence 224568999999999999999999999999999998876654 78776
Q ss_pred EEEE-----EEcCCCCEEEEEECCC----eEEEEECCC-CceEEEeecCCcee---EEEEeecCCEEEEEeCCCeEEEEE
Q 005656 255 VVGV-----ACDSTNTLMISAGYHG----DIKVWDFKG-RDLKSRWEVGCSLV---KIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 255 v~~l-----~~~~~~~~l~s~s~dg----~i~iwd~~~-~~~~~~~~~~~~i~---~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
+... .|++++.++++++.|+ +|++||+++ .+++..+..+.... .....++|.++++|+.|+.|++|+
T Consensus 212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 5432 3457888999988774 799999995 56666665543322 223344577899999999999999
Q ss_pred cCCCeeEEEEe--cCCCCeEEEEEcCCC
Q 005656 322 VVALRMVRKFE--GHTDRITDFCFSEDG 347 (685)
Q Consensus 322 ~~~~~~~~~~~--~h~~~I~~l~~spdg 347 (685)
+..+. +..+. .+..++.+++|.|..
T Consensus 292 ~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 292 HSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCc-EEeecccccCCCccceEEcccc
Confidence 98764 22232 256778899999964
No 97
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=212.93 Aligned_cols=279 Identities=18% Similarity=0.275 Sum_probs=218.6
Q ss_pred eEEEEeC--CCcEEE-Ee-----cCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEE
Q 005656 50 ISLHFFA--NEPVLM-SA-----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFS 120 (685)
Q Consensus 50 ~~l~~sp--~~~~l~-s~-----s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd 120 (685)
+++.||| .+++.+ ++ ...|++.|-+++.+.+...+ ..+ .-...+..++|+++ .+.+++++.||++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~-~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQEC-QSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEE-Eee-ecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 6788998 333332 32 13678888887644332222 222 34677899999996 66888999999999999
Q ss_pred eecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656 121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200 (685)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 200 (685)
+..... .+...+.
T Consensus 90 ~~~~s~-------------------------------------------------------------------Pi~~~kE 102 (311)
T KOG0277|consen 90 LTMPSK-------------------------------------------------------------------PIHKFKE 102 (311)
T ss_pred cCCCCc-------------------------------------------------------------------chhHHHh
Confidence 532211 0111127
Q ss_pred CCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEE
Q 005656 201 NPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKV 278 (685)
Q Consensus 201 ~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~i 278 (685)
|...|.++.|++ .+..+++++-||+|++|+...+..+.++. +|...|...+|+|. ...+++++.||++++
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~--------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l 174 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN--------GHNSCIYQAAFSPHIPNLFASASGDGTLRL 174 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec--------CCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence 888999999998 45667888999999999999998888876 99999999999995 578999999999999
Q ss_pred EECCC-CceEEEeecCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCC-CEEEEEe
Q 005656 279 WDFKG-RDLKSRWEVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSG 354 (685)
Q Consensus 279 wd~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg-~~l~s~s 354 (685)
||++. |+......+...+.++.|+.-. +++++|+.|+.|++||++.- .++..+.+|.-.|..+.|||.. ..|++++
T Consensus 175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS 254 (311)
T ss_pred EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcc
Confidence 99985 4444433344699999998754 58999999999999999875 5688899999999999999954 5899999
Q ss_pred CCCcEEEEEcCCC-ceeeEEeeccc-eEEEEEcC-CCCeEEEEEeCCCeEEEEEc
Q 005656 355 MDGSLRIWDVILA-RQIDAIHVDVS-ITALSLSP-NMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 355 ~Dg~I~iwd~~~~-~~i~~~~~~~~-v~~v~~sp-dg~~Lat~~~d~~~I~lW~~ 406 (685)
.|-++||||...+ .++.+..+|.. |..+.||+ ++.++|.++-|+ .++||+.
T Consensus 255 YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe-~l~Vw~p 308 (311)
T KOG0277|consen 255 YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDE-LLYVWNP 308 (311)
T ss_pred ccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccc-ceeeecc
Confidence 9999999998844 45666777777 89999998 577999999998 8999973
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=6.5e-26 Score=230.00 Aligned_cols=284 Identities=13% Similarity=0.149 Sum_probs=219.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 95 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v 95 (685)
++++++.||.|.+||+.+++....+. .|. .+.+++|+|+++.+ ++++.++.|++||..++ +....+..+.. +
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~-~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~-~ 75 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFP-VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGPD-P 75 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEE-CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCCC-c
Confidence 78899999999999999999888886 444 46789999999876 56778999999998765 44444444433 5
Q ss_pred eEEEEecCCCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656 96 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 174 (685)
Q Consensus 96 ~~i~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (685)
..++|+|+++.++++ +.|+.+++||+.+.+....+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~------------------------------------------- 112 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP------------------------------------------- 112 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------------------------------------------
Confidence 678999999877655 568999999997655433321
Q ss_pred cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEECCCCccccccccccccccCCCCc
Q 005656 175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNG 253 (685)
Q Consensus 175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~h~~ 253 (685)
....+.+++++|+|++++++..++ .+.+||..++...... ....
T Consensus 113 --------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~ 157 (300)
T TIGR03866 113 --------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---------LVDQ 157 (300)
T ss_pred --------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---------EcCC
Confidence 122356799999999999988875 4677898877654433 1223
Q ss_pred CEEEEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEeecC--------CceeEEEEeecCCEEEEE-eCCCeEEEEEcC
Q 005656 254 EVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV 323 (685)
Q Consensus 254 ~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~ 323 (685)
.+.+++|++++++++++ ..++.|++||+.+++....+... .....++|+|++++++++ +.++.+.+||+.
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 45679999999988655 46899999999998877665432 123468899999976554 556789999999
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCceeeEEeeccceEEEEEcC
Q 005656 324 ALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHVDVSITALSLSP 386 (685)
Q Consensus 324 ~~~~~~~~~~h~~~I~~l~~spdg~~l~s~-s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~sp 386 (685)
+++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+.+++++..+..+..++.++++|
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 988876654 44579999999999999876 468999999999999999999887789999876
No 99
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=3.7e-27 Score=236.98 Aligned_cols=376 Identities=19% Similarity=0.245 Sum_probs=274.4
Q ss_pred EEEEcc-CCCCEEEEEeCCCcEEEEeCCCC--eeeEEeecccccCeeEEEEeCCCc---EEEEecCCCcEEEEEecCCCC
Q 005656 7 ALAFSS-DGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 7 ~l~fsp-dg~~~latg~~dg~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~---~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+++.| .+..++|.|+.+..|.++.-... +....+. ||.+.|.+++|..-+. +|+|+|.|..||||.+...+.
T Consensus 150 cL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~-GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 150 CLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELE-GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD 228 (764)
T ss_pred HHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEee-ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC
Confidence 556666 56678888999988999876543 4566777 9999999999987544 899999999999998865431
Q ss_pred CC-----------------cee----------EecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceee--Eec
Q 005656 81 DP-----------------RLL----------RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR--ELS 131 (685)
Q Consensus 81 ~~-----------------~~~----------~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~ 131 (685)
.. ..+ ..+.||...|.++.|+|.+..|++++.|.++.+|......-+- ...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR 308 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR 308 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE
Confidence 10 111 2245999999999999999999999999999999876553211 111
Q ss_pred hhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc
Q 005656 132 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 211 (685)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s 211 (685)
.+..... ..-.+.+.. ....+.+.++.-.+..+.|...+.. .-.......+|...|+.++|+
T Consensus 309 lGe~gg~--------------a~GF~g~lw---~~n~~~ii~~g~~Gg~hlWkt~d~~-~w~~~~~iSGH~~~V~dv~W~ 370 (764)
T KOG1063|consen 309 LGEVGGS--------------AGGFWGGLW---SPNSNVIIAHGRTGGFHLWKTKDKT-FWTQEPVISGHVDGVKDVDWD 370 (764)
T ss_pred eeccccc--------------ccceeeEEE---cCCCCEEEEecccCcEEEEeccCcc-ceeeccccccccccceeeeec
Confidence 1100000 000000000 0112678888889999999832221 112223345889999999999
Q ss_pred cCCCEEEEEecCCcEEEEECCCCccc-cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC------
Q 005656 212 ACGNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR------ 284 (685)
Q Consensus 212 ~~g~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~------ 284 (685)
|.|.|+++.+.|-+-++|-.-..+.. ..+. ...-|.-.++|+++-+....+++|.....+|+|+....
T Consensus 371 psGeflLsvs~DQTTRlFa~wg~q~~wHEia-----RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~ 445 (764)
T KOG1063|consen 371 PSGEFLLSVSLDQTTRLFARWGRQQEWHEIA-----RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLM 445 (764)
T ss_pred CCCCEEEEeccccceeeecccccccceeeec-----ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHH
Confidence 99999999999999999865521111 1111 22268888999999886777899988899999965421
Q ss_pred -------------------------------------ce----------------------------------EEEeecC
Q 005656 285 -------------------------------------DL----------------------------------KSRWEVG 293 (685)
Q Consensus 285 -------------------------------------~~----------------------------------~~~~~~~ 293 (685)
.. ...+.|+
T Consensus 446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG 525 (764)
T KOG1063|consen 446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG 525 (764)
T ss_pred HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence 00 0111233
Q ss_pred CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656 294 CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
..|.+++.+|+++++|+++.. ..|++|+..+...+..+.+|.-.|+.++|||||++|+++|.|.++.+|......
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc
Confidence 568999999999999999864 379999999999999999999999999999999999999999999999875432
Q ss_pred e----eeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 369 Q----IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 369 ~----i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
. ....+.|.. |+++.|+|++.++||++.|. .|.+|...
T Consensus 606 ~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK-~VkVW~~~ 648 (764)
T KOG1063|consen 606 KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK-KVKVWEEP 648 (764)
T ss_pred chhhhhccccccceEEEEcccCcccceeEEecCCc-eEEEEecc
Confidence 2 122445665 99999999999999999998 99999754
No 100
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=229.31 Aligned_cols=283 Identities=15% Similarity=0.254 Sum_probs=227.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+++|.|++=+|..-..+|+|+.||.|+|||+.+..+..+++ +|.+.|..|++.. ..++++|.|.+|+.|.++..
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-- 139 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-- 139 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeeeccCC--
Confidence 889999999999874489999999999999999999999999 9999999999986 68899999999999987763
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
.++++.+ ...+..|.-+..+..++|||. .|.|||.........+.
T Consensus 140 ---p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms----------------------------- 184 (433)
T KOG0268|consen 140 ---PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS----------------------------- 184 (433)
T ss_pred ---cceeeec-cccccccccccccccccccCc--eeeecccccCCccceee-----------------------------
Confidence 3444322 345666776666778888876 48999987766555543
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE-EEEEecCCcEEEEECCCCccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF-AVLGTAGGWIERFNLQSGISRGS 239 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~~~d~~~~~~~~~ 239 (685)
.....+.++.|+|.... |+++.+|+.|.+||++.+.+...
T Consensus 185 ---------------------------------------wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K 225 (433)
T KOG0268|consen 185 ---------------------------------------WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK 225 (433)
T ss_pred ---------------------------------------cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccce
Confidence 33567899999997655 55566999999999999988877
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEee-cCCceeEEEEeecCCEEEEEeCCCeE
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
. .-...-+.|+|+|..-.+++++.|..++.||++... ++.... +.+.+.++.|+|.|+-+++|+-|.+|
T Consensus 226 V---------i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksI 296 (433)
T KOG0268|consen 226 V---------ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSI 296 (433)
T ss_pred e---------eeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceE
Confidence 6 334566789999988888999999999999998643 333333 34889999999999999999999999
Q ss_pred EEEEcCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 005656 318 RLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 371 (685)
Q Consensus 318 ~i~d~~~~~~~~~~~-~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~ 371 (685)
+||....+..--.+. .--..|.++.||.|.+|+++||.|+.|++|.....+.+.
T Consensus 297 RIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 297 RIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred EEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 999988764322221 112459999999999999999999999999877655443
No 101
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=9.2e-28 Score=232.19 Aligned_cols=283 Identities=13% Similarity=0.243 Sum_probs=241.4
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc--cCCCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~ 121 (685)
.|..-|.++..+...+.++||+. |.|+|||+...... ..+..+. ....-|.++...|||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k-~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK-SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-CccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 58888899999999999999875 78999999765322 2222222 23567889999999999999999999999999
Q ss_pred ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 201 (685)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 201 (685)
......... .....
T Consensus 495 AapTprika------------------------------------------------------------------eltss 508 (705)
T KOG0639|consen 495 AAPTPRIKA------------------------------------------------------------------ELTSS 508 (705)
T ss_pred cCCCcchhh------------------------------------------------------------------hcCCc
Confidence 655421111 00022
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
.....+++++||.+..++++.||.|.+||+.+...++.|. +|...+.||.++++|..|.||+.|.+|+.||+
T Consensus 509 apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------GhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 509 APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc--------CCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 2346788999999999999999999999999999998886 99999999999999999999999999999999
Q ss_pred CCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005656 282 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361 (685)
Q Consensus 282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~i 361 (685)
+.++.+......+.|.++.++|.+.++++|..++.+.|......+ ...+.-|.+-|.++.|++.|+|+++.+.|..+..
T Consensus 581 regrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 581 REGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred hhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence 999999888888999999999999999999999999998876444 3456679999999999999999999999999999
Q ss_pred EEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 404 (685)
Q Consensus 362 wd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW 404 (685)
|..+-|..+...+..++|.++..|.|.+|++||+.|. .-.||
T Consensus 660 wrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdk-kATVY 701 (705)
T KOG0639|consen 660 WRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDK-KATVY 701 (705)
T ss_pred ccCccccceeeccccCcceeeeeccCceEEEecCCCc-ceEEE
Confidence 9999999999998899999999999999999999885 45555
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.3e-26 Score=236.68 Aligned_cols=277 Identities=14% Similarity=0.318 Sum_probs=229.4
Q ss_pred cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656 43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122 (685)
Q Consensus 43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~ 122 (685)
.+|+.+-+.++|.|+|.+|++++.||.|++|+.......++.+. .+...|.+++.. +.+|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIACY--SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence 47999999999999999999999999999998766533444332 267777777764 5599999999999999987
Q ss_pred cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656 123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 202 (685)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 202 (685)
.+.....+. ...
T Consensus 85 s~~~~~iL~--------------------------------------------------------------------Rft 96 (933)
T KOG1274|consen 85 SGEEDTILA--------------------------------------------------------------------RFT 96 (933)
T ss_pred CCCccceee--------------------------------------------------------------------eee
Confidence 765433221 335
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 282 (685)
-++++++++.+|++++.|++|-.|++.++........+. +|.++|.++.++|.+.+||+.+.||.|++||+.
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr--------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR--------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred ccceEEEEecCCcEEEeecCceeEEEEeccccchheeec--------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 678999999999999999999999999999888777665 999999999999999999999999999999999
Q ss_pred CCceEEEeec---------CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec--CCCCeEEEEEcCCCCEEE
Q 005656 283 GRDLKSRWEV---------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLL 351 (685)
Q Consensus 283 ~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~spdg~~l~ 351 (685)
++.+..++.. ...+..++|+|+|..+++.+.|+.|++|+..++.....++. |...+++++|||+|+|||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 9877665543 25577899999999999999999999999999988887764 445599999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656 352 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 404 (685)
Q Consensus 352 s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW 404 (685)
+++.||.|.|||+.+ ..+-.....|.+++|-|++.-+-.....| ...+|
T Consensus 249 As~~~g~I~vWnv~t---~~~~~~~~~Vc~~aw~p~~n~it~~~~~g-~~~~~ 297 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDT---HERHEFKRAVCCEAWKPNANAITLITALG-TLGVS 297 (933)
T ss_pred eeccCCcEEEEeccc---chhccccceeEEEecCCCCCeeEEEeecc-ccccC
Confidence 999999999999998 22222344599999999998776666554 44444
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-26 Score=234.67 Aligned_cols=272 Identities=18% Similarity=0.289 Sum_probs=226.5
Q ss_pred EEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEe
Q 005656 51 SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL 130 (685)
Q Consensus 51 ~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 130 (685)
-+.|+. .+.|+.|. ...|.+|+..++ ........+...|+++.|+++|.+|++|..+|.|.|||..+.+....+
T Consensus 182 lldWss-~n~laVal-g~~vylW~~~s~----~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL-GQSVYLWSASSG----SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred Hhhccc-CCeEEEEe-cceEEEEecCCC----ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc
Confidence 356773 44666664 458999987765 333333334899999999999999999999999999999877665554
Q ss_pred chhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE
Q 005656 131 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI 210 (685)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (685)
.. .|...|.+++|
T Consensus 256 ~~-------------------------------------------------------------------~h~~rvg~laW 268 (484)
T KOG0305|consen 256 RG-------------------------------------------------------------------SHASRVGSLAW 268 (484)
T ss_pred cC-------------------------------------------------------------------CcCceeEEEec
Confidence 31 26788999999
Q ss_pred ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe
Q 005656 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW 290 (685)
Q Consensus 211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (685)
. +..+.+|+.+|.|..+|++........ ..+|...|.++.|++++.++++|+.|+.+.|||.....+...+
T Consensus 269 ~--~~~lssGsr~~~I~~~dvR~~~~~~~~-------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~ 339 (484)
T KOG0305|consen 269 N--SSVLSSGSRDGKILNHDVRISQHVVST-------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF 339 (484)
T ss_pred c--CceEEEecCCCcEEEEEEecchhhhhh-------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE
Confidence 8 788999999999999999988776652 1289999999999999999999999999999999766665555
Q ss_pred -ecCCceeEEEEeecC-CEEEEEe--CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEc
Q 005656 291 -EVGCSLVKIVYHRVN-GLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG--MDGSLRIWDV 364 (685)
Q Consensus 291 -~~~~~i~~~~~~~~~-~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s--~Dg~I~iwd~ 364 (685)
.+.+.|..++|+|-. .+||+|+ .|+.|++||..+++.+..+. -.+.|..+.|++..+-|+++. .++.|.||+.
T Consensus 340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 455999999999965 4888875 48999999999999998886 457799999999987777653 5678999999
Q ss_pred CCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 365 ILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 365 ~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
++.+.+..+..|.. |..+++||||..+++|+.|+ ++++|+.
T Consensus 419 ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE-Tlrfw~~ 460 (484)
T KOG0305|consen 419 PSMKLVAELLGHTSRVLYLALSPDGETIVTGAADE-TLRFWNL 460 (484)
T ss_pred cccceeeeecCCcceeEEEEECCCCCEEEEecccC-cEEeccc
Confidence 99999999887766 99999999999999999998 9999974
No 104
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.6e-27 Score=227.15 Aligned_cols=291 Identities=18% Similarity=0.190 Sum_probs=231.9
Q ss_pred CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec-CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC
Q 005656 25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103 (685)
Q Consensus 25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 103 (685)
.++.+||+.+|....+++.+-...-.++.... +.+++++. ....+.+|.+...... ....--.++|.+++-+|+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~-~~yllsaq~~rp~l~vw~i~k~~~~----~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALN-NEYLLSAQLKRPLLHVWEILKKDQV----VQYIVLPGPVHALASSNL 92 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhc-hhheeeecccCccccccccCchhhh----hhhcccccceeeeecCCC
Confidence 45999999999998888733122222333222 24555554 4568999987665321 122235678999999999
Q ss_pred CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 183 (685)
Q Consensus 104 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 183 (685)
|.+|+.|+-.|.|.+|.+.+|.....+.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~---------------------------------------------------- 120 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLS---------------------------------------------------- 120 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHH----------------------------------------------------
Confidence 9999988899999999999987655543
Q ss_pred EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc-cccccccccccCCCCcCEEEEEEcC
Q 005656 184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDS 262 (685)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~ 262 (685)
.|-..|+|+.|+.||.++++|+.||.|.+|.+-.-... ......+......|.-+|+++...+
T Consensus 121 ----------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~ 184 (476)
T KOG0646|consen 121 ----------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGS 184 (476)
T ss_pred ----------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecC
Confidence 67788999999999999999999999999987432110 0001222234458999999999877
Q ss_pred C--CCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC---------------
Q 005656 263 T--NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--------------- 325 (685)
Q Consensus 263 ~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--------------- 325 (685)
. +.+++|+|.|.++++||+..+.++.++..+..+.+++.+|.++.+++|+.+|.|.+.++...
T Consensus 185 Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 185 GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE 264 (476)
T ss_pred CCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence 5 46899999999999999999999999999999999999999999999999999999887532
Q ss_pred -eeEEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCC
Q 005656 326 -RMVRKFEGHTD--RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNM 388 (685)
Q Consensus 326 -~~~~~~~~h~~--~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg 388 (685)
..+..+.||.+ .|+|++.+-||..|++|+.||.|+|||+.+.++++++. ..++|+.+.+.|=-
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 34667789998 99999999999999999999999999999999999988 67779999986643
No 105
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.8e-27 Score=215.64 Aligned_cols=279 Identities=17% Similarity=0.294 Sum_probs=215.2
Q ss_pred eeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceee
Q 005656 49 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 128 (685)
Q Consensus 49 V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 128 (685)
..|+.|++.|.+||+|+.||.|.|||+.+. .+-+.+.+|..||++++|+++|+.|++++.|..|.+||+..+...+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~----~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF----RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc----chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence 789999999999999999999999999997 6777889999999999999999999999999999999999988776
Q ss_pred EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656 129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 208 (685)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (685)
.+ ...++|..+
T Consensus 102 ri---------------------------------------------------------------------rf~spv~~~ 112 (405)
T KOG1273|consen 102 RI---------------------------------------------------------------------RFDSPVWGA 112 (405)
T ss_pred EE---------------------------------------------------------------------EccCcccee
Confidence 66 235678888
Q ss_pred EEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 005656 209 TISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK 287 (685)
Q Consensus 209 ~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (685)
.|+|.. +..++.-.+..-.+.++..+.+...-.. ....-+..-.+..|++.|+++++|...|.+.++|..+.+++
T Consensus 113 q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d----~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v 188 (405)
T KOG1273|consen 113 QWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD----DDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV 188 (405)
T ss_pred eeccccCCeEEEEEecCCcEEEEecCCceeeccCC----CccccccccccccccCCCCEEEEecCcceEEEEecchheee
Confidence 888844 3333333344444555544332211110 00011122233478999999999999999999999999998
Q ss_pred EEeecC--CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-------ee--EEEEec--CCCCeEEEEEcCCCCEEEEEe
Q 005656 288 SRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-------RM--VRKFEG--HTDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 288 ~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-------~~--~~~~~~--h~~~I~~l~~spdg~~l~s~s 354 (685)
..+... ..|..+.++..|+.+++.+.|..||.|+++.- ++ .+++.. ....-.+++||.||.|++.++
T Consensus 189 as~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 189 ASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred eeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence 877764 68899999999999999999999999998631 11 111111 112345789999999999877
Q ss_pred -CCCcEEEEEcCCCceeeEEeeccc--eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 355 -MDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 355 -~Dg~I~iwd~~~~~~i~~~~~~~~--v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
.-..++||.-..|.++..+++..+ ...+.|+|-...+++- +.+.|++|..
T Consensus 269 ~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si--~sg~v~iw~~ 321 (405)
T KOG1273|consen 269 ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI--ASGVVYIWAV 321 (405)
T ss_pred ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec--cCCceEEEEe
Confidence 446799999999999999998764 8899999998888887 3348999973
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=238.46 Aligned_cols=293 Identities=17% Similarity=0.232 Sum_probs=242.9
Q ss_pred EEEEe-CCCcEEEEecCCCcEEEEEecCCCCC--CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCcee
Q 005656 51 SLHFF-ANEPVLMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 127 (685)
Q Consensus 51 ~l~~s-p~~~~l~s~s~D~~v~iWd~~~~~~~--~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 127 (685)
.+..+ |++++|+|||.||.|++|++...... ......+..|...|+.+....+|+.|+++|.|-+|++|+...+..
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~- 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT- 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-
Confidence 34444 46678999999999999998766443 234667788999999999999999999999999999999865520
Q ss_pred eEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE
Q 005656 128 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA 207 (685)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~ 207 (685)
.+......|...|.|
T Consensus 108 -----------------------------------------------------------------~c~stir~H~DYVkc 122 (735)
T KOG0308|consen 108 -----------------------------------------------------------------FCMSTIRTHKDYVKC 122 (735)
T ss_pred -----------------------------------------------------------------hhHhhhhcccchhee
Confidence 111222378899999
Q ss_pred EEE-ccCCCEEEEEecCCcEEEEECCCC--ccccccccccccccC-CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656 208 CTI-SACGNFAVLGTAGGWIERFNLQSG--ISRGSYLDMSERSNY-AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 283 (685)
Q Consensus 208 ~~~-s~~g~~l~~g~~dg~i~~~d~~~~--~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (685)
+++ -++...+++|+-|+.|.+||+.++ .....+......... ++..+|.+++.++.|..+++|+..+.+++||.++
T Consensus 123 la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 123 LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc
Confidence 999 788889999999999999999988 345555444433333 8899999999999999999999999999999999
Q ss_pred CceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656 284 RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 284 ~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw 362 (685)
++.+..+..| ..|.++..++||..+++++.||+|++||+...+++.++..|...|.++..+|+-..+++|+.||.|..=
T Consensus 203 ~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 203 CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEec
Confidence 8877777655 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCC-CceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656 363 DVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 410 (685)
Q Consensus 363 d~~~-~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~ 410 (685)
|+.+ .++...++...+|..+..+...+-+-+++.|+ .|.-|.....+
T Consensus 283 dl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds-~I~rW~~~~~~ 330 (735)
T KOG0308|consen 283 DLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDS-SIKRWKLEPDI 330 (735)
T ss_pred ccCCchhheEeecCCCchhhhhhccccCCceeeeccc-cceecCCcccc
Confidence 9998 55666667777888888875544445566676 89999765544
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=208.87 Aligned_cols=274 Identities=16% Similarity=0.235 Sum_probs=220.2
Q ss_pred cccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656 43 EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121 (685)
Q Consensus 43 ~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~ 121 (685)
..-.+.|.+|+||| ...+++.+|-||+||+|++... +.... +....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecC-Ccccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 35678999999999 4556778899999999999874 21111 455679999999999999999999999999999999
Q ss_pred ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 201 (685)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 201 (685)
.+++....- .|
T Consensus 102 ~S~Q~~~v~---------------------------------------------------------------------~H 112 (347)
T KOG0647|consen 102 ASGQVSQVA---------------------------------------------------------------------AH 112 (347)
T ss_pred cCCCeeeee---------------------------------------------------------------------ec
Confidence 988543322 67
Q ss_pred CCCeEEEEEccCCC--EEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656 202 PTAVKACTISACGN--FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 279 (685)
Q Consensus 202 ~~~v~~~~~s~~g~--~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 279 (685)
..+|.++.|-+..+ .|++|+-|.+|+.||+++...+.++ .-...+.++.+ ....++.+..++.|.+|
T Consensus 113 d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~---------~LPeRvYa~Dv--~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 113 DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL---------QLPERVYAADV--LYPMAVVATAERHIAVY 181 (347)
T ss_pred ccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee---------eccceeeehhc--cCceeEEEecCCcEEEE
Confidence 88999999988776 8999999999999999988777665 33455666554 34578888889999999
Q ss_pred ECCCCceEEE-e--ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC--eeEEEEecCCC---------CeEEEEEcC
Q 005656 280 DFKGRDLKSR-W--EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--RMVRKFEGHTD---------RITDFCFSE 345 (685)
Q Consensus 280 d~~~~~~~~~-~--~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~---------~I~~l~~sp 345 (685)
+++++..... . .....+.|++..++....|.|+-.|.+.|..+..+ +.-.+|+.|.. .|++++|+|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence 9976543221 1 23367899999999998899999999999999886 44456666753 478999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCC
Q 005656 346 DGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 346 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
.-..|+|++.||++.+||-.....+.... ++.+|++.+|+.+|.++|.+..-+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 98899999999999999988776666644 566799999999999999886544
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=220.35 Aligned_cols=281 Identities=17% Similarity=0.264 Sum_probs=240.6
Q ss_pred ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656 46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~ 125 (685)
...+.++...|..+.++||+.|.++.++|...+ +.+..+.||...|+.+.|+|+...+++++.|..|++|......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~----q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN----QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh----hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 356888888888789999999999999998887 8899999999999999999999999999999999999986554
Q ss_pred eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656 126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 205 (685)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 205 (685)
..... ..|..+|
T Consensus 295 ~~~~~--------------------------------------------------------------------~~h~~~V 306 (506)
T KOG0289|consen 295 EPTSS--------------------------------------------------------------------RPHEEPV 306 (506)
T ss_pred Ccccc--------------------------------------------------------------------ccccccc
Confidence 32221 1678899
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 005656 206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 285 (685)
Q Consensus 206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (685)
+.+..+|.|.|++.++.||+..+.|+++|........ ....-.+++.+|+|||..+.+|..||.|+|||+.++.
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence 9999999999999999999999999999988766521 0223458999999999999999999999999999998
Q ss_pred eEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 286 LKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 286 ~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
....+..+ ++|..+.|+.+|-+||++++|+.|++||++..+...++.-.. ..|.++.|.+.|.+|+.++.|=+|++++
T Consensus 381 ~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 381 NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 88888766 899999999999999999999999999999988887776432 3699999999999999998876666666
Q ss_pred cC--CCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 364 VI--LARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 364 ~~--~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
-. +..++..+..+. ..+++.|....+++++++.|. .++++.
T Consensus 461 k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~-~l~~~a 504 (506)
T KOG0289|consen 461 KKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA-ILRLYA 504 (506)
T ss_pred cccccceeeehhhhcccccceeeecccceEEeeccchh-heEEee
Confidence 33 556777777666 599999999999999999986 677764
No 109
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.3e-25 Score=236.03 Aligned_cols=223 Identities=14% Similarity=0.217 Sum_probs=174.5
Q ss_pred CCCcEEEEEEcc-CCCCEEEEEeCCCcEEEEeCCCCe-------eeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEE
Q 005656 1 MRGAVTALAFSS-DGQPLLASGASSGVISIWNLEKRR-------LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIK 71 (685)
Q Consensus 1 h~~~V~~l~fsp-dg~~~latg~~dg~I~vwd~~~~~-------~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~ 71 (685)
|+++|++++|+| ++. +||+|+.||+|++||+.++. .+..+. +|...|.+++|+|++ ++|++++.|++|+
T Consensus 74 H~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred CCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence 789999999999 777 99999999999999997652 455666 899999999999985 6999999999999
Q ss_pred EEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656 72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 151 (685)
Q Consensus 72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (685)
+||+..+ ..+..+.+|...|.+++|+|+|.+|++++.||+|++||+++++....+.
T Consensus 152 IWDl~tg----~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-------------------- 207 (493)
T PTZ00421 152 VWDVERG----KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-------------------- 207 (493)
T ss_pred EEECCCC----eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe--------------------
Confidence 9999876 5667778999999999999999999999999999999998876554432
Q ss_pred CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC-CeEEEEEccCCCEEEEEe----cCCcE
Q 005656 152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT-AVKACTISACGNFAVLGT----AGGWI 226 (685)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~g~----~dg~i 226 (685)
.|.. ....+.|.+++..+++++ .++.|
T Consensus 208 ------------------------------------------------~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 208 ------------------------------------------------AHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred ------------------------------------------------cCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 2222 234567788777776543 47899
Q ss_pred EEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC--CceeEEEEee
Q 005656 227 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHR 303 (685)
Q Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~ 303 (685)
++||+++........ ...+...+....|++++.++++++ .||.|++||+.++.+....... .++..++|.|
T Consensus 240 klWDlr~~~~p~~~~------~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 240 MLWDTRKMASPYSTV------DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred EEEeCCCCCCceeEe------ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 999998754322211 012334566778999999998887 5999999999988766554332 3455555555
No 110
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=217.33 Aligned_cols=318 Identities=17% Similarity=0.241 Sum_probs=240.3
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC--
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG-- 80 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~-- 80 (685)
.-|.|++|.++|+ ++||.++|.|.||+..+.+..+... +|.+.|.+++...+|.+| ||+.|..|..||-+....
T Consensus 247 k~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 247 KFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred eEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEe-ecCccceEEecccccccccc
Confidence 4589999999998 8899999999999999988888888 999999999999999655 599999999998322110
Q ss_pred --------CCc--------------------------eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce
Q 005656 81 --------DPR--------------------------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 126 (685)
Q Consensus 81 --------~~~--------------------------~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 126 (685)
..+ .-....+|....+.++.+|+..++++++.|+.+++|+ ..+.
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~ 400 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL 400 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence 000 0011135566666666666666677777777777776 2211
Q ss_pred eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeE
Q 005656 127 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK 206 (685)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~ 206 (685)
.... ....++.
T Consensus 401 ~wt~---------------------------------------------------------------------~~~d~~~ 411 (626)
T KOG2106|consen 401 EWTK---------------------------------------------------------------------IIEDPAE 411 (626)
T ss_pred eEEE---------------------------------------------------------------------EecCcee
Confidence 1110 2256789
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 005656 207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL 286 (685)
Q Consensus 207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (685)
|+.|+|.| .+++|+..|...+.|..+...+..- ..+.+++++.|+|+|.+|+.|+.|+.|++|.+.....
T Consensus 412 ~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~---------~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH---------TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EeeccCcc-eEEEeeccceEEEEecccceeEEEE---------ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 99999999 9999999999999999985554432 2378999999999999999999999999999875432
Q ss_pred -EEEee--cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE--------------EE----ecCCCCeEEEEEcC
Q 005656 287 -KSRWE--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR--------------KF----EGHTDRITDFCFSE 345 (685)
Q Consensus 287 -~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--------------~~----~~h~~~I~~l~~sp 345 (685)
..... ..++|+.+.|++|++++.+.+.|-.|-.|....-+.+. -| ..|...|+.++-+.
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~ 561 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH 561 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh
Confidence 22221 23899999999999999999999999999543221111 11 13556678888888
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcee---eEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 346 DGKWLLSSGMDGSLRIWDVILARQI---DAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 346 dg~~l~s~s~Dg~I~iwd~~~~~~i---~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
+.+.+|+|...|.|++|..+-.+.. ..+..|+. |++++|.-+...|++.+.|- .|..|..
T Consensus 562 ~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~-Si~qW~l 625 (626)
T KOG2106|consen 562 CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDT-SIMQWRL 625 (626)
T ss_pred hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCc-eEEEEEe
Confidence 9999999999999999998754443 33344555 99999999999999988775 9999974
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=9.6e-26 Score=227.05 Aligned_cols=280 Identities=18% Similarity=0.245 Sum_probs=231.0
Q ss_pred eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeE-EEEec-CCCEEEEEeCC
Q 005656 36 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC-IRFYA-NGRHILSAGQD 113 (685)
Q Consensus 36 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~-i~~~~-~~~~l~s~s~d 113 (685)
++.+.+. +|...|..+++.++. +++++|.||++++|+-... .......+.+|.+-|.. ++|.+ ++..+++|+.|
T Consensus 5 ~ls~~l~-gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~--~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 5 KLSHELE-GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK--QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred eeEEEec-cCccchheeEecCCe-EEeecCCCCceeeeeccCc--ccccceecccCcceeeccceeccccCcceEeeccc
Confidence 4556676 999999999977654 8999999999999965333 22333456677777776 78775 44569999999
Q ss_pred CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656 114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 193 (685)
Q Consensus 114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 193 (685)
+++.+|...+......+.
T Consensus 81 ~~i~v~~~~~~~P~~~Lk-------------------------------------------------------------- 98 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLK-------------------------------------------------------------- 98 (745)
T ss_pred ceEEEEecCCCCchhhhh--------------------------------------------------------------
Confidence 999999987766544443
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC
Q 005656 194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 273 (685)
Q Consensus 194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 273 (685)
+|...|++++...++. +++|+-|.++++|-..... ... .+|+..|+.++.-|.+ .++|||.|
T Consensus 99 ------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~--~~l--------~gH~asVWAv~~l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 99 ------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV--YSL--------QGHTASVWAVASLPEN-TYVTGSAD 160 (745)
T ss_pred ------ccccceeeeecCCcCc-eEecccccceEEecchhhh--ccc--------CCcchheeeeeecCCC-cEEeccCc
Confidence 8899999999988888 9999999999999764432 222 2999999999999988 79999999
Q ss_pred CeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 005656 274 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 352 (685)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s 352 (685)
.+|++|.- ++.++++..| ..|..+++-+++ .+++++.||.|+.|++ +|+++.+..||++-|.+++..+++..+++
T Consensus 161 KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred ceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence 99999985 6777777766 778888888765 4678899999999999 78999999999999999998888899999
Q ss_pred EeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 353 SGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 353 ~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
+++|++++||+.. ++.+.+.++. .|+++.+-++|+ +++|+.|| .||||+..
T Consensus 237 ~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG-~VrVfT~~ 288 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDG-RVRVFTVD 288 (745)
T ss_pred ecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCc-eEEEEEec
Confidence 9999999999976 8899999888 499999999988 55666687 99999855
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.2e-26 Score=243.90 Aligned_cols=248 Identities=19% Similarity=0.273 Sum_probs=205.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC------------------CeeeEEeecccccCeeEEEEeCCCcEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------------------RRLQSVIREAHDNAIISLHFFANEPVLM 62 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~------------------~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 62 (685)
|.+.|+|+.|+|||+ +||+|+.|+.|.||.... .+....+. +|...|..++|+|++.+|+
T Consensus 68 h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred ccCceeEEEECCCCC-eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEE
Confidence 889999999999999 999999999999998772 13566777 9999999999999999999
Q ss_pred EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 142 (685)
Q Consensus 63 s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 142 (685)
++|.|++|.+|+..+. ..+..+.+|...|..+.|.|-|+||++-+.|++|++|++.+....+.+......
T Consensus 146 S~s~DnsViiwn~~tF----~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~------ 215 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTF----ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE------ 215 (942)
T ss_pred EecccceEEEEccccc----eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh------
Confidence 9999999999987776 778888999999999999999999999999999999998766555554321100
Q ss_pred cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 005656 143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 222 (685)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 222 (685)
......+..+.|||||.+|++...
T Consensus 216 --------------------------------------------------------~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 216 --------------------------------------------------------SPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred --------------------------------------------------------CCCcceeeecccCCCcCeecchhh
Confidence 033456889999999999998643
Q ss_pred ----CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-----CC------------EEEEEECCCeEEEEEC
Q 005656 223 ----GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-----NT------------LMISAGYHGDIKVWDF 281 (685)
Q Consensus 223 ----dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~------------~l~s~s~dg~i~iwd~ 281 (685)
...+.+.+-.+-..-..+. +|.+++.++.|+|. .. .+++|+.|++|.||..
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~Lv--------GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLV--------GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred ccCCcceeEEEecCCceeeeeee--------cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 2356777665554444443 99999999999881 11 6788999999999999
Q ss_pred CCCceEEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656 282 KGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 282 ~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 324 (685)
...+++..... ...|..++|+|||-.|++++.||+|.++..+.
T Consensus 312 ~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 312 ALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 87777655443 47899999999999999999999999998764
No 113
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=3.3e-26 Score=214.82 Aligned_cols=245 Identities=18% Similarity=0.295 Sum_probs=201.3
Q ss_pred CCCcEEEEEEccCCC--CEEEEEeCCCcEEEEeCCCCee----eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656 1 MRGAVTALAFSSDGQ--PLLASGASSGVISIWNLEKRRL----QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 74 (685)
Q Consensus 1 h~~~V~~l~fspdg~--~~latg~~dg~I~vwd~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd 74 (685)
|.++|.+++|---.. ..+++++.|.++++|-++.++. +...+ ||..+|-++...++|..+++||.|++++||+
T Consensus 143 ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs 221 (423)
T KOG0313|consen 143 HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWS 221 (423)
T ss_pred CCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCCeEEeecccceeeecc
Confidence 789999888754332 2699999999999999887654 23333 9999999999999999999999999999998
Q ss_pred ecCC---------------------CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechh
Q 005656 75 FDTT---------------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR 133 (685)
Q Consensus 75 ~~~~---------------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 133 (685)
.... .+...++..+.||..+|.++.|++ ...+++++.|.+|+.||+.++.....+
T Consensus 222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~--- 297 (423)
T KOG0313|consen 222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL--- 297 (423)
T ss_pred cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee---
Confidence 3221 112345677889999999999998 568999999999999999998876655
Q ss_pred hHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC
Q 005656 134 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 213 (685)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 213 (685)
..+..+.++.++|.
T Consensus 298 ------------------------------------------------------------------~~~ksl~~i~~~~~ 311 (423)
T KOG0313|consen 298 ------------------------------------------------------------------TTNKSLNCISYSPL 311 (423)
T ss_pred ------------------------------------------------------------------ecCcceeEeecccc
Confidence 33567899999999
Q ss_pred CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc-eEEEee
Q 005656 214 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRD-LKSRWE 291 (685)
Q Consensus 214 g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~-~~~~~~ 291 (685)
.+.+++|+.|..+++||.+++.-..... ...+|++.|.++.|+|.+. .|++++.|+++++||+++.+ ++..+.
T Consensus 312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~-----s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 312 SKLLASGSSDRHIRLWDPRTGDGSVVSQ-----SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred cceeeecCCCCceeecCCCCCCCceeEE-----eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999999999999999999874322211 2349999999999999874 68899999999999999766 666665
Q ss_pred c-CCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656 292 V-GCSLVKIVYHRVNGLLATVADDLVIRLFDV 322 (685)
Q Consensus 292 ~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~ 322 (685)
. ...|.++.|. ++.++++|+.|.+|+|+.-
T Consensus 387 ~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 387 GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 4 4889999997 4679999999999999864
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.8e-25 Score=203.57 Aligned_cols=269 Identities=15% Similarity=0.211 Sum_probs=221.6
Q ss_pred ecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656 42 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121 (685)
Q Consensus 42 ~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~ 121 (685)
.......|.++.|+|.+..|+.++.||++++|++.... ++..-.|..|+.+++|.++ ..+++|+.||.|+.+|+
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-----l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-----LKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDL 82 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh-----hhhheecCCceeeeeccCC-ceEEEeccCceEEEEEe
Confidence 33457889999999999999999999999999998762 2223368999999999874 57999999999999999
Q ss_pred ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 201 (685)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 201 (685)
.++...... .|
T Consensus 83 n~~~~~~ig---------------------------------------------------------------------th 93 (323)
T KOG1036|consen 83 NTGNEDQIG---------------------------------------------------------------------TH 93 (323)
T ss_pred cCCcceeec---------------------------------------------------------------------cC
Confidence 877543322 67
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
...++|+..++-.+.+++|+-|+.|++||.+.......+ .....|.++... +..|++|+.|..+.+||+
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~---------d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF---------DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEecccccccccc---------ccCceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 889999999999999999999999999999985555544 334478888765 668999999999999999
Q ss_pred CCCceEEE---eecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC----eeEEEEecCCC---------CeEEEEEcC
Q 005656 282 KGRDLKSR---WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL----RMVRKFEGHTD---------RITDFCFSE 345 (685)
Q Consensus 282 ~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~----~~~~~~~~h~~---------~I~~l~~sp 345 (685)
++.....+ -.....+.++++.|++.=+++++-||.|.+=.++.. +.-..|+.|.. +|++|+|+|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 98654442 233478999999998888999999999988766655 33455666653 699999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeEEeec-cceEEEEEcCCCCeEEEEEe
Q 005656 346 DGKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHV 396 (685)
Q Consensus 346 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg~~Lat~~~ 396 (685)
-...||||+.||.|.+||+.+.+.+..+..- ..|.+++|+.||..||+++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9889999999999999999999888888654 55999999999999999974
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2e-25 Score=224.71 Aligned_cols=273 Identities=18% Similarity=0.276 Sum_probs=226.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeE--EeecccccCeeE-EEEeC-CCcEEEEecCCCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS--VIREAHDNAIIS-LHFFA-NEPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~--~~~~~h~~~V~~-l~~sp-~~~~l~s~s~D~~v~iWd~~ 76 (685)
|+..|..+++.+.. .+++++.||++++|+-..++... .+. +|.+-|.+ +++.+ ++-.+++|+.|.+|.+|...
T Consensus 13 H~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 13 HKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred CccchheeEecCCe--EEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeecccceEEEEecC
Confidence 77788888887765 68899999999999987666544 344 78888877 88876 34469999999999999887
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 156 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
.. .++.++.||...|.|++...++. ++|||.|.++++|....-. .
T Consensus 90 ~~----~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~--~---------------------------- 134 (745)
T KOG0301|consen 90 QA----EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV--Y---------------------------- 134 (745)
T ss_pred CC----CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh--c----------------------------
Confidence 76 67888899999999999887776 9999999999999763221 1
Q ss_pred eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656 157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 236 (685)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~ 236 (685)
...+|...|.++..-|.+ .+++|+.|..|++|.- +..
T Consensus 135 ----------------------------------------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~ 171 (745)
T KOG0301|consen 135 ----------------------------------------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL 171 (745)
T ss_pred ----------------------------------------ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch
Confidence 122889999999999988 8999999999999976 566
Q ss_pred ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCe
Q 005656 237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV 316 (685)
Q Consensus 237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 316 (685)
..++. +|...|+++++-+++. +++|+.||.|++|++....+.....+..-+.++....++..+++++.|++
T Consensus 172 l~tf~--------gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 172 LKTFS--------GHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT 242 (745)
T ss_pred hhhhc--------cchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce
Confidence 66664 9999999999998754 88999999999999965555555556688999998888999999999999
Q ss_pred EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
++||+.. ++++.+.-....|+++.+-++|+ +++|+.||.||||....
T Consensus 243 lriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 243 LRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9999976 77788875555899999998887 67788899999998763
No 116
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.6e-24 Score=228.59 Aligned_cols=207 Identities=12% Similarity=0.204 Sum_probs=167.3
Q ss_pred CCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCcc-ccccccccccccCCCCcCEEEEEEcCCCCE-EEEEECCCeE
Q 005656 200 ENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNTL-MISAGYHGDI 276 (685)
Q Consensus 200 ~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~s~dg~i 276 (685)
+|...|.+++|+|+ ++++++|+.||.|++||+.++.. ..... .+.....+|...|.+++|+|++.. +++++.|++|
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI 150 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV 150 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence 78899999999997 79999999999999999986532 11100 011122389999999999999875 5789999999
Q ss_pred EEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEE-----EEcCCCCEEE
Q 005656 277 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF-----CFSEDGKWLL 351 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l-----~~spdg~~l~ 351 (685)
++||+++++....+.++..|.+++|+|+|.+|++++.|+.|+|||+++++.+.++.+|.+.+... .|++++.+|+
T Consensus 151 rIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il 230 (568)
T PTZ00420 151 NIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL 230 (568)
T ss_pred EEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEE
Confidence 99999999888777777889999999999999999999999999999999999999998865433 3568999999
Q ss_pred EEeCCC----cEEEEEcCC-CceeeEEeeccc---eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 352 SSGMDG----SLRIWDVIL-ARQIDAIHVDVS---ITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 352 s~s~Dg----~I~iwd~~~-~~~i~~~~~~~~---v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
+++.|+ +|+|||+.. +.++..+..+.. +......++|.++++|..|+ .|++|+...
T Consensus 231 TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~-tIr~~e~~~ 294 (568)
T PTZ00420 231 STGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG-NCRYYQHSL 294 (568)
T ss_pred EEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC-eEEEEEccC
Confidence 988774 799999984 667776665544 33344455688888988887 999998754
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=3.3e-24 Score=217.47 Aligned_cols=268 Identities=13% Similarity=0.137 Sum_probs=205.1
Q ss_pred CcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEE-EEEeCCCceEEEEeecCceeeEechhhHH
Q 005656 58 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVA 136 (685)
Q Consensus 58 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 136 (685)
+..+++++.|+.+++||..++ +.+..+.++. .+.+++|+|+++.+ ++++.++.|++||+.+++....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~----~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL----EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP----- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC----ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-----
Confidence 357889999999999998766 4555555554 46789999999876 566778999999987765433321
Q ss_pred HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656 137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 216 (685)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 216 (685)
. ...+..++++|+++.
T Consensus 71 ---------------------------------------------------------------~-~~~~~~~~~~~~g~~ 86 (300)
T TIGR03866 71 ---------------------------------------------------------------S-GPDPELFALHPNGKI 86 (300)
T ss_pred ---------------------------------------------------------------C-CCCccEEEECCCCCE
Confidence 1 122456889999998
Q ss_pred EEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC-eEEEEECCCCceEEEeecCC
Q 005656 217 AVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVGC 294 (685)
Q Consensus 217 l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~ 294 (685)
++++ ..++.+.+||+.++.....+ .+...+.+++|+|++.++++++.++ .+.+||..+++.........
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~---------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEI---------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ 157 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEe---------eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC
Confidence 8665 45899999999987665544 2233467899999999999888765 57788998887776665556
Q ss_pred ceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecCC-----C--CeEEEEEcCCCCEEEE-EeCCCcEEEEEcC
Q 005656 295 SLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHT-----D--RITDFCFSEDGKWLLS-SGMDGSLRIWDVI 365 (685)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~-----~--~I~~l~~spdg~~l~s-~s~Dg~I~iwd~~ 365 (685)
....++|+|+++++++++ .++.|++||+.+++.+..+..+. . ....++|+|++++++. .+.++.|.+||+.
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 678899999999876554 58999999999998877765332 1 2356889999998654 4556789999999
Q ss_pred CCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 366 LARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 366 ~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
+++.+..+.....+.+++|+|+|++|+++...++.|.+|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 238 TYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 9988877766667999999999999998765445999998654
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=8e-26 Score=217.72 Aligned_cols=248 Identities=20% Similarity=0.350 Sum_probs=200.9
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe----------eeEEeecccccCeeEEEEeCCCc-EEEEecCCCc
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR----------LQSVIREAHDNAIISLHFFANEP-VLMSASADNS 69 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~----------~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~ 69 (685)
|.|.|+.+..-|....++|+++..+.|.|||..+-. +-.++. +|.+.=++++|++... .|++++.|++
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEeeccCCCc
Confidence 778899999999988899999999999999986522 122566 8999889999999655 8999999999
Q ss_pred EEEEEecCCCCC---CceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 70 IKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 70 v~iWd~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
|++||+...... ......+.+|...|..++|++- ...+.+++.|+.+.|||++++. .+..
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~-~~~~--------------- 265 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT-SKPS--------------- 265 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-CCCc---------------
Confidence 999999876542 3455677899999999999995 5678899999999999997531 0000
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW 225 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 225 (685)
T Consensus 266 -------------------------------------------------------------------------------- 265 (422)
T KOG0264|consen 266 -------------------------------------------------------------------------------- 265 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCc-eEEEeec-CCceeEEEEe
Q 005656 226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRD-LKSRWEV-GCSLVKIVYH 302 (685)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~-~~~~~~~-~~~i~~~~~~ 302 (685)
. ...+|.+.|.|++|+|-+ ..|||||.|++|++||+++.. .+.++.. ...|.++.|+
T Consensus 266 ------------~--------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 266 ------------H--------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred ------------c--------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 0 112899999999999965 578899999999999999643 4445544 4899999999
Q ss_pred ecCC-EEEEEeCCCeEEEEEcCCC--------------eeEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcC
Q 005656 303 RVNG-LLATVADDLVIRLFDVVAL--------------RMVRKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVI 365 (685)
Q Consensus 303 ~~~~-~l~~~~~dg~I~i~d~~~~--------------~~~~~~~~h~~~I~~l~~spdg~~l-~s~s~Dg~I~iwd~~ 365 (685)
|... .||+++.|+.+.|||+..- +++....||...|+++.|+|+..|+ +|++.|+.+.||...
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9865 8999999999999998642 3356667999999999999988764 578899999999975
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-23 Score=212.20 Aligned_cols=372 Identities=15% Similarity=0.189 Sum_probs=271.0
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 81 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~ 81 (685)
.+.|-+++|++.|+ |.+.+.+|.|.-||+.+++....+. ...+.|.+++.+|.+..++.|+.||.+...+. +.+.
T Consensus 69 drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~--~p~~ 143 (691)
T KOG2048|consen 69 DRSIESLAWAEGGR--LFSSGLSGSITEWDLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSI--GPDK 143 (691)
T ss_pred CCceeeEEEccCCe--EEeecCCceEEEEecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEec--CCce
Confidence 35789999997776 6777889999999999999999998 88999999999999999999999995555544 4333
Q ss_pred CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc-Cceeeeecc
Q 005656 82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL-KPVIAFDCA 160 (685)
Q Consensus 82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (685)
....+.+....+.|.+++|+|++..+++|+.||.|++||...+......... .+.+.. .+....+..
T Consensus 144 I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~------------~d~l~k~~~~iVWSv~ 211 (691)
T KOG2048|consen 144 ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ------------LDRLSKREPTIVWSVL 211 (691)
T ss_pred EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec------------ccccccCCceEEEEEE
Confidence 3444556666789999999999999999999999999999988876633211 111111 223333332
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
.+ -+..+.++...|.+..||...+.+.+.. ..+...|.+++..++++.+++++.|+.|..|...++......
T Consensus 212 ~L----rd~tI~sgDS~G~V~FWd~~~gTLiqS~----~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 212 FL----RDSTIASGDSAGTVTFWDSIFGTLIQSH----SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred Ee----ecCcEEEecCCceEEEEcccCcchhhhh----hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence 22 2456888999999999999887665433 367889999999999999999999999999988776542111
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------------------ceE----------
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----------------------DLK---------- 287 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-----------------------~~~---------- 287 (685)
......|...|.++++.++ .+++|+.|.++.+-..... ++.
T Consensus 284 ----~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~l 357 (691)
T KOG2048|consen 284 ----NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDL 357 (691)
T ss_pred ----eccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccc
Confidence 0122378888999988766 7888888887766533220 000
Q ss_pred -------------------EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC------------------------
Q 005656 288 -------------------SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA------------------------ 324 (685)
Q Consensus 288 -------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~------------------------ 324 (685)
.....+..|.+.+.+|+|++++.+.-. ..+||.+..
T Consensus 358 wrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~f 436 (691)
T KOG2048|consen 358 WRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISF 436 (691)
T ss_pred eeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEE
Confidence 011123568899999999999988721 222222211
Q ss_pred ------------------------C--eeEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE-ee
Q 005656 325 ------------------------L--RMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HV 375 (685)
Q Consensus 325 ------------------------~--~~~~~~~--~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~-~~ 375 (685)
. +.+..+. +....|+.+..||||+|||+.+.+|.|.+|++.+++..... ..
T Consensus 437 tid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl 516 (691)
T KOG2048|consen 437 TIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL 516 (691)
T ss_pred EecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc
Confidence 0 0000000 12346899999999999999999999999999988765555 45
Q ss_pred ccceEEEEEcC-CCCeEEEEEeCCCeEEEEEc
Q 005656 376 DVSITALSLSP-NMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 376 ~~~v~~v~~sp-dg~~Lat~~~d~~~I~lW~~ 406 (685)
...|+.++|+| +...|+.++.++ .|+=|+.
T Consensus 517 n~~vTa~~~~~~~~~~lvvats~n-Qv~efdi 547 (691)
T KOG2048|consen 517 NIDVTAAAFSPFVRNRLVVATSNN-QVFEFDI 547 (691)
T ss_pred CcceeeeeccccccCcEEEEecCC-eEEEEec
Confidence 66799999995 567888888785 8988875
No 120
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.8e-25 Score=202.85 Aligned_cols=312 Identities=15% Similarity=0.218 Sum_probs=221.2
Q ss_pred EEEEeCCCCee-----eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC-CCceeEecccCCCCCeEEEE
Q 005656 27 ISIWNLEKRRL-----QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG-DPRLLRFRSGHSAPPLCIRF 100 (685)
Q Consensus 27 I~vwd~~~~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~~~h~~~v~~i~~ 100 (685)
+.-|+.+.... ...++ +|.+.|++++|+.||++|+|++.|++|++|+++.... ..++++.. -.-+..+.+.|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LK-gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~F 140 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLK-GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVF 140 (420)
T ss_pred hhhhcccCCCcccchhhhhhh-ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEE
Confidence 45565554443 23455 9999999999999999999999999999999876432 12333322 12235788999
Q ss_pred ecCCCE-EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656 101 YANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 179 (685)
Q Consensus 101 ~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (685)
.||-+- ++++-...++++|.+...+. ...+ ..
T Consensus 141 apDc~s~vv~~~~g~~l~vyk~~K~~d-G~~~----------------------------------------------~~ 173 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGNKLCVYKLVKKTD-GSGS----------------------------------------------HH 173 (420)
T ss_pred CCCcceEEEEEccCCEEEEEEeeeccc-CCCC----------------------------------------------cc
Confidence 999654 44555566899998754332 0000 00
Q ss_pred EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEE
Q 005656 180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 259 (685)
Q Consensus 180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 259 (685)
..-|| .+.....|...+..+-+-..+.++.+++.|..|.+|++. |+....+. .....-+..+
T Consensus 174 ~v~~D---------~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id--------tnq~~n~~aa 235 (420)
T KOG2096|consen 174 FVHID---------NLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID--------TNQSSNYDAA 235 (420)
T ss_pred ccccc---------ccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec--------ccccccccee
Confidence 00011 000111455566777788889999999999999999999 77766654 3444556788
Q ss_pred EcCCCCEEEEEECCCeEEEEECC---CCc-----eEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC------
Q 005656 260 CDSTNTLMISAGYHGDIKVWDFK---GRD-----LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA------ 324 (685)
Q Consensus 260 ~~~~~~~l~s~s~dg~i~iwd~~---~~~-----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~------ 324 (685)
++|+|+++++++..-.|++|..- .|. ....+. +.+.+..++|++++..+++.+.||+++|||++-
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 99999999999999999999863 221 122333 348899999999999999999999999999863
Q ss_pred -CeeEEEE----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe--eccceEEEEEcCCCCeEEEEEeC
Q 005656 325 -LRMVRKF----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 325 -~~~~~~~----~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d 397 (685)
.+.+++. ....+....+..+|.|+.||.+. ...+++|..++|+....+. +...|++++|+++|+++++++ |
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-d 393 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-D 393 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-c
Confidence 2223332 12233445899999999888765 4579999999998887775 344499999999999999998 4
Q ss_pred CCeEEEEEcCC
Q 005656 398 QNGVYLWVNRC 408 (685)
Q Consensus 398 ~~~I~lW~~~~ 408 (685)
. .+++..|-+
T Consensus 394 r-~vrv~~ntp 403 (420)
T KOG2096|consen 394 R-YVRVIRNTP 403 (420)
T ss_pred e-eeeeecCCC
Confidence 3 788886543
No 121
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=6.5e-25 Score=220.95 Aligned_cols=377 Identities=18% Similarity=0.220 Sum_probs=248.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eeeEEee----cccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIR----EAHDNAIISLHFFANEPVLMSASADNSIKMWI 74 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--~~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd 74 (685)
|.+.|.++.|+|.+. .|.+++.|.++.+|.-.+. --+-..+ .|..++..+..|+|+++.+++-+.-|..++|.
T Consensus 266 HeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 266 HEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred cccceEEEEEccchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 889999999999997 6788999999999976654 2222222 14456789999999999999999999999997
Q ss_pred ecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
..............||...|..++|.|.|.+|+++|.|.+-|+|---..+.. -.+...|++
T Consensus 345 -t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~------------------wHEiaRPQi 405 (764)
T KOG1063|consen 345 -TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE------------------WHEIARPQI 405 (764)
T ss_pred -ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc------------------eeeeccccc
Confidence 2233344556677899999999999999999999999999999864311111 011122222
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE-----ccCCCEE-EEEecCCcEEE
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-----SACGNFA-VLGTAGGWIER 228 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l-~~g~~dg~i~~ 228 (685)
-.++....+--..+..+..+.+...+++++....-.. .-..+...++ .|+|-.+ +.|-++.-+..
T Consensus 406 HGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~---------~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~ 476 (764)
T KOG1063|consen 406 HGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK---------SLMAICGKCFKGSDELPDGANVPALGLSNKAFFP 476 (764)
T ss_pred ccccceeeehccCCceeeecccceeeeeecCcHHHHH---------HHHHHhCccccCchhcccccccccccccCCCCcc
Confidence 2222222111111223333444444444443221000 0011111111 1111111 11111111110
Q ss_pred EECCCCcc----c--------ccccc-------------ccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEE
Q 005656 229 FNLQSGIS----R--------GSYLD-------------MSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKV 278 (685)
Q Consensus 229 ~d~~~~~~----~--------~~~~~-------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~i 278 (685)
=+..+|.. . ..+.. +.....++|.-.|.+++.+|+++++++++.. ..|++
T Consensus 477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~l 556 (764)
T KOG1063|consen 477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRL 556 (764)
T ss_pred cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEE
Confidence 01111111 0 00000 0123456999999999999999999999754 35999
Q ss_pred EECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee----EEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656 279 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM----VRKFEGHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 279 wd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~I~~l~~spdg~~l~s~ 353 (685)
|+..+......+..| -.|+.++|+|||++|++.+.|.++.+|....... ....+.|+.-|.++.|+|++.+++|+
T Consensus 557 w~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 557 WNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred EeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEe
Confidence 999987777766554 7899999999999999999999999998754321 23367899999999999999999999
Q ss_pred eCCCcEEEEEcCCC--ceee---EEeeccceEEEEEcCC-----CCeEEEEEeCCCeEEEEEcC
Q 005656 354 GMDGSLRIWDVILA--RQID---AIHVDVSITALSLSPN-----MDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 354 s~Dg~I~iwd~~~~--~~i~---~~~~~~~v~~v~~spd-----g~~Lat~~~d~~~I~lW~~~ 407 (685)
|.|.+|+||..... +.+. .+.+..+|++++|.|- +..+++|-..| .|++|..+
T Consensus 637 SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~G-eI~l~~~~ 699 (764)
T KOG1063|consen 637 SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG-EIVLWRRK 699 (764)
T ss_pred cCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEeccc-EEEEEecc
Confidence 99999999999877 4433 3456777999999872 23556666665 99999844
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.1e-24 Score=215.05 Aligned_cols=328 Identities=18% Similarity=0.215 Sum_probs=251.1
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee-eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 81 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~ 81 (685)
.+|+|+||+.+.+ .||.+-.+|.|.||++..+-+ ...+..+-++.|.+++|++ +..|++.+.+|+|.-||+.+.
T Consensus 26 s~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l--- 100 (691)
T KOG2048|consen 26 SEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL--- 100 (691)
T ss_pred cceEEEEEeccCC-ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC---
Confidence 5799999999988 899999999999999987644 4455544567899999995 558888899999999999887
Q ss_pred CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
+.........++|++++.+|.+..++.|+.||.+..++...+.......
T Consensus 101 -k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~------------------------------ 149 (691)
T KOG2048|consen 101 -KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS------------------------------ 149 (691)
T ss_pred -ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee------------------------------
Confidence 5666667788999999999999999999999977777776554433221
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~ 241 (685)
.....+.+.+++|+|++..++.|+.||.|++||..++.......
T Consensus 150 ------------------------------------l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~ 193 (691)
T KOG2048|consen 150 ------------------------------------LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIIT 193 (691)
T ss_pred ------------------------------------cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEee
Confidence 00335789999999999999999999999999999998766221
Q ss_pred cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLF 320 (685)
Q Consensus 242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~ 320 (685)
....+.......-|+++.+-.++ .|++|..-|+|++||...+.+++.+..+ +.|.+++..+++.++++++.|+.|.-|
T Consensus 194 ~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 194 MQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred ecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence 11111111244567888888655 5899999999999999999998887755 889999999999999999999999999
Q ss_pred EcCCCee----EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-------------------------------
Q 005656 321 DVVALRM----VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI------------------------------- 365 (685)
Q Consensus 321 d~~~~~~----~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~------------------------------- 365 (685)
...+.+. ......|...|.+++..++ .+++|+.|.++.+-...
T Consensus 273 ~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w 350 (691)
T KOG2048|consen 273 SLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLW 350 (691)
T ss_pred EecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEe
Confidence 8776532 2234568888999988776 67777777666554321
Q ss_pred -----------CC------c--eeeEE--eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 366 -----------LA------R--QIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 366 -----------~~------~--~i~~~--~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
+. . .+..+ +.+..|.+.+.||+|++++.+... .++||.++
T Consensus 351 ~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~--~~~iy~L~ 411 (691)
T KOG2048|consen 351 KAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS--RTKIYRLQ 411 (691)
T ss_pred ccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc--ceEEEEec
Confidence 11 0 00111 123348999999999999999866 56777543
No 123
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=8.9e-25 Score=219.93 Aligned_cols=334 Identities=15% Similarity=0.235 Sum_probs=245.5
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCC----CeeeEEeecccccCeeEEEEeCC-----------CcEEEEecCCCcE
Q 005656 6 TALAFSSDGQPLLASGASSGVISIWNLEK----RRLQSVIREAHDNAIISLHFFAN-----------EPVLMSASADNSI 70 (685)
Q Consensus 6 ~~l~fspdg~~~latg~~dg~I~vwd~~~----~~~~~~~~~~h~~~V~~l~~sp~-----------~~~l~s~s~D~~v 70 (685)
-++.|++... .|.+...|..++|||+.. +++..-+ -|...|+.+.-.|. ...++|++.|++|
T Consensus 328 IA~~Fdet~~-klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 328 IACQFDETTD-KLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred eEEEecCCCc-eEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 3678998877 788888899999999986 3444444 59999998887661 2268999999999
Q ss_pred EEEEecCCCCCCc----e-----------------------------eEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656 71 KMWIFDTTDGDPR----L-----------------------------LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 117 (685)
Q Consensus 71 ~iWd~~~~~~~~~----~-----------------------------~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~ 117 (685)
++|+++....... + ....-+....+.+++.+|+|++|++|..-|+++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 9999876321100 0 000112345689999999999999999999999
Q ss_pred EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656 118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 197 (685)
Q Consensus 118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 197 (685)
||++..-.....+... -..+.++... .......+++....+..+.++|...... .+.+
T Consensus 485 Vy~Lq~l~~~~~~eAH-----------------esEilcLeyS--~p~~~~kLLASasrdRlIHV~Dv~rny~---l~qt 542 (1080)
T KOG1408|consen 485 VYDLQELEYTCFMEAH-----------------ESEILCLEYS--FPVLTNKLLASASRDRLIHVYDVKRNYD---LVQT 542 (1080)
T ss_pred EEEehhhhhhhheecc-----------------cceeEEEeec--CchhhhHhhhhccCCceEEEEecccccc---hhhh
Confidence 9999765543332211 1112111111 0111123455566677888998765432 2334
Q ss_pred CCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe
Q 005656 198 CPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 275 (685)
Q Consensus 198 ~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~ 275 (685)
..+|...|+++.|-..| ..+++++.|..|.+--.+.......+... ........+..++++|..+++++++.|..
T Consensus 543 ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~---t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn 619 (1080)
T KOG1408|consen 543 LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH---TQTLSKTTLYDMAVDPTSKLVVTVCQDRN 619 (1080)
T ss_pred hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc---ccccccceEEEeeeCCCcceEEEEecccc
Confidence 44889999999998887 67788888877654433321111112100 00122457899999999999999999999
Q ss_pred EEEEECCCCceEEEeecC----CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656 276 IKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL 351 (685)
Q Consensus 276 i~iwd~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~ 351 (685)
|+|||+.+++....+... +....+...|.|.++|+.+.|.++.+||..+++++.+..||...|+.+.|++|.+.|+
T Consensus 620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLI 699 (1080)
T ss_pred eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhe
Confidence 999999999999988753 6788899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEEcCCC
Q 005656 352 SSGMDGSLRIWDVILA 367 (685)
Q Consensus 352 s~s~Dg~I~iwd~~~~ 367 (685)
+.+.||.|.||.++.-
T Consensus 700 SvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 700 SVSGDGCIFVWKLPLT 715 (1080)
T ss_pred eecCCceEEEEECchh
Confidence 9999999999998763
No 124
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=5.6e-25 Score=211.38 Aligned_cols=304 Identities=20% Similarity=0.277 Sum_probs=237.0
Q ss_pred EeCCCCeeeEEeecccccCeeEEEEeCCCc--EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCE
Q 005656 30 WNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRH 106 (685)
Q Consensus 30 wd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~ 106 (685)
.|+.+-.....++ .|.+.|++++|+|..+ ++++|..-|+|-+||+.+......-+..+..|+++|.++.|+|. ...
T Consensus 171 l~l~~~~~~~v~k-v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 171 LDLDDYRILNVAK-VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccccceecceeE-ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence 3444444555565 7899999999999654 88888889999999997555444556667899999999999995 568
Q ss_pred EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcC
Q 005656 107 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 186 (685)
Q Consensus 107 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 186 (685)
+++.+.||+|++-|+........+..
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~v~s~------------------------------------------------------ 275 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEEVLSL------------------------------------------------------ 275 (498)
T ss_pred eeeeccCceeeeeeecchhhHHHhhc------------------------------------------------------
Confidence 99999999999999976643222210
Q ss_pred ccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-C
Q 005656 187 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T 265 (685)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~ 265 (685)
......+..+.++.+...+++|..=|...+||++++....... .-|...|.+++++|.. .
T Consensus 276 ------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-------~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 276 ------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL-------RLHKKKITSVALNPVCPW 336 (498)
T ss_pred ------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh-------hhhhcccceeecCCCCch
Confidence 0223456778888888888999888899999999876643322 2788899999999976 5
Q ss_pred EEEEEECCCeEEEEECCCCc-----eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcC----CCeeEEEEecCCC
Q 005656 266 LMISAGYHGDIKVWDFKGRD-----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV----ALRMVRKFEGHTD 336 (685)
Q Consensus 266 ~l~s~s~dg~i~iwd~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~----~~~~~~~~~~h~~ 336 (685)
+++|+|.|++.+|||++... .+.++.+...|.+..|+|.+..|++.+.|..|+|||.. .-.+..++. |..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 78999999999999998532 36677788999999999999999999999999999984 334444443 332
Q ss_pred ------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc--eEEE-EEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 337 ------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITAL-SLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 337 ------~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~--v~~v-~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
......|.|+..++++|-.-..|-|+|-..++.+..+..+.. |.++ .|+|-+..+++|+..++.|+||.++
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 134568999999999999999999999988888887765443 5444 7999999788888777799999865
Q ss_pred C
Q 005656 408 C 408 (685)
Q Consensus 408 ~ 408 (685)
.
T Consensus 496 ~ 496 (498)
T KOG4328|consen 496 K 496 (498)
T ss_pred C
Confidence 3
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.8e-25 Score=216.42 Aligned_cols=282 Identities=11% Similarity=0.193 Sum_probs=237.9
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC---eeeEEeec-ccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~---~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~ 76 (685)
|..-|.++++|...+ .++||+. |.|+|||+... ..+..+.. ....-|+++..+|||+.|++|+.-.++.|||+.
T Consensus 418 HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred cCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 566788899998888 8899885 77999999753 23333321 245679999999999999999999999999998
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 156 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
.... ++...+....-...+++.+||.+..+++..||.|.|||+.+...++.+.
T Consensus 496 apTp--rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq------------------------- 548 (705)
T KOG0639|consen 496 APTP--RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ------------------------- 548 (705)
T ss_pred CCCc--chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-------------------------
Confidence 7643 3333343444556788999999999999999999999998877666553
Q ss_pred eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656 157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 236 (685)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~ 236 (685)
+|...+.|+.++++|..|.+|+-|.+|+.||++.+..
T Consensus 549 -------------------------------------------GhtDGascIdis~dGtklWTGGlDntvRcWDlregrq 585 (705)
T KOG0639|consen 549 -------------------------------------------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ 585 (705)
T ss_pred -------------------------------------------CCCCCceeEEecCCCceeecCCCccceeehhhhhhhh
Confidence 8899999999999999999999999999999999887
Q ss_pred ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCe
Q 005656 237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV 316 (685)
Q Consensus 237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 316 (685)
.... .....|.++..+|++.+++.|-.++.+.+.............+.+.|.++.|.+.|+++++.+.|+-
T Consensus 586 lqqh---------dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl 656 (705)
T KOG0639|consen 586 LQQH---------DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 656 (705)
T ss_pred hhhh---------hhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh
Confidence 7654 5568899999999999999999999999998877666666666789999999999999999999999
Q ss_pred EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
+..|...-|..+...+ ..+.|.++.+|.|.++++|||.|..-.||.+
T Consensus 657 LnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 657 LNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999998888777665 5678999999999999999999988888875
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-25 Score=216.55 Aligned_cols=232 Identities=21% Similarity=0.329 Sum_probs=196.9
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC----
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT---- 77 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~---- 77 (685)
.|+|+|++-+|+|. +|+.|+..|.|++|.+.+|.++..+. +|-..|+|+.|+.||.+|+|||.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 81 PGPVHALASSNLGY-FLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccceeeeecCCCce-EEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 47899999999998 88888899999999999999999997 9999999999999999999999999999998743
Q ss_pred -CCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 78 -TDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 78 -~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
.+....+++.+.+|.-+|+.+...+. ..+|+|+|.|.++++||+..+.....+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti------------------------ 214 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI------------------------ 214 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE------------------------
Confidence 23356788889999999999998765 468999999999999999888765554
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 234 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~ 234 (685)
..+..+.+++++|-++.+++|+.+|.|.+.++..-
T Consensus 215 ---------------------------------------------~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 215 ---------------------------------------------TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred ---------------------------------------------ecCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 34678999999999999999999999999887543
Q ss_pred c--cc------cccccccccccCCCCc--CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEee
Q 005656 235 I--SR------GSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHR 303 (685)
Q Consensus 235 ~--~~------~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~ 303 (685)
. .. ............+|.+ .|+|++++-||..|++|+.||.|.+||+.+.++++++. ..++|+.+.+.|
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 3 11 1111122234458888 99999999999999999999999999999999999888 568888888765
Q ss_pred c
Q 005656 304 V 304 (685)
Q Consensus 304 ~ 304 (685)
-
T Consensus 330 ~ 330 (476)
T KOG0646|consen 330 L 330 (476)
T ss_pred c
Confidence 3
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=225.53 Aligned_cols=281 Identities=15% Similarity=0.265 Sum_probs=228.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 79 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~ 79 (685)
|+++-+.|+|.|+|. +|.|++.||.|++|+..+. +....+. .|...|.+++.. +.+|++|+.+++|.+|.++.+.
T Consensus 12 ht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred ccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 788899999999999 9999999999999998776 4444554 477888888765 5599999999999999998774
Q ss_pred CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656 80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 159 (685)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (685)
... .+....-++++++|+.+|++++.||.|-.|++.++.+....+.+.
T Consensus 88 ~~~----iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr---------------------------- 135 (933)
T KOG1274|consen 88 EDT----ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR---------------------------- 135 (933)
T ss_pred ccc----eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec----------------------------
Confidence 322 223457789999999999999999999999999988776655553
Q ss_pred ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656 160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 239 (685)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~ 239 (685)
+|..+|.++.++|++++|++.+.||.|++||++++.....
T Consensus 136 ----------------------------------------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 136 ----------------------------------------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred ----------------------------------------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 7899999999999999999999999999999999998877
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCe
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLV 316 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~ 316 (685)
+..............+..++|+|+|..++..+.|+.|++|+..+......+... ..+.++.|+|+|.|||+++.||.
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~ 255 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ 255 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc
Confidence 765443333233566788999999888988999999999999998887776543 55999999999999999999999
Q ss_pred EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005656 317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361 (685)
Q Consensus 317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~i 361 (685)
|.|||.++... ......|++++|-|++.-+-.-..-|...+
T Consensus 256 I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 256 ILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred EEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 99999998221 223467999999998875544433443333
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.6e-25 Score=211.51 Aligned_cols=284 Identities=14% Similarity=0.213 Sum_probs=229.2
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~ 78 (685)
.++|+||.|+|..+ +|.+|+.||.++||.+... ..++.+. --..+|.+++|.|+|. .+++++....+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 46899999999887 9999999999999988653 3455554 4578999999999999 9999999999999999765
Q ss_pred CCCCceeEecccCC-CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 79 DGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 79 ~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
.- ..+....++. ..+.....++++++|+..|..|.|.+....+++....+
T Consensus 291 k~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--------------------------- 341 (514)
T KOG2055|consen 291 KV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--------------------------- 341 (514)
T ss_pred cc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------------------------
Confidence 32 2233334444 35667788999999999999999999988877765555
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
...+.|..++|+.+|+.+++.+.+|.|++||++...+.
T Consensus 342 ------------------------------------------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 342 ------------------------------------------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCL 379 (514)
T ss_pred ------------------------------------------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceE
Confidence 33677899999999999999999999999999999888
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC------CceEEEee-cCCceeEEEEeecCCEEEE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG------RDLKSRWE-VGCSLVKIVYHRVNGLLAT 310 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~-~~~~i~~~~~~~~~~~l~~ 310 (685)
..+.. ...-.-++++.++++.++|+|+..|.|.|||.++ .+++..+. ....|+++.|++++.+||.
T Consensus 380 ~rf~D-------~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 380 HRFVD-------DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI 452 (514)
T ss_pred EEEee-------cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence 77742 1122335677789999999999999999999653 23443332 3478999999999999998
Q ss_pred EeC--CCeEEEEEcCCCeeEEEEecC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 311 VAD--DLVIRLFDVVALRMVRKFEGH---TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 311 ~~~--dg~I~i~d~~~~~~~~~~~~h---~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
++. +..+++..+.+......|... -+.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus 453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 875 568999999887777666543 3468999999999999999999999999874
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.8e-25 Score=203.36 Aligned_cols=287 Identities=20% Similarity=0.314 Sum_probs=221.3
Q ss_pred eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce
Q 005656 37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 116 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i 116 (685)
+.+.+. ||.++|..++.....+.+.+++.|.+.+||.++++ +++..+.||.+.|++|.|++.+.++++++.|++-
T Consensus 140 lvre~~-GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg----~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELE-GHKDGIWHVAADSTQPICGTASADHTARIWSLESG----ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred ehhhhc-ccccceeeehhhcCCcceeecccccceeEEeeccc----cceeeecccccceeeEEeccccceEEEccCCcch
Confidence 445555 99999999999888899999999999999999998 8899999999999999999999999999999999
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
.||...-.-.... +.. | ...+.. ....
T Consensus 215 HIW~~av~~~vP~---~~a-----------------~-~~hSsE--------------------------------eE~e 241 (481)
T KOG0300|consen 215 HIWKAAVNWEVPS---NNA-----------------P-SDHSSE--------------------------------EEEE 241 (481)
T ss_pred HHHHHhhcCcCCC---CCC-----------------C-CCCCch--------------------------------hhhh
Confidence 9997321100000 000 0 000000 0000
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656 197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 276 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 276 (685)
....+ .+-+.-....||. +|++ +. ....+|.+.|.+..|-..|+.+++++.|.+.
T Consensus 242 ~sDe~-~~d~d~~~~sD~~---------tiRv-------Pl--------~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 242 HSDEH-NRDTDSSEKSDGH---------TIRV-------PL--------MRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred ccccc-ccccccccccCCc---------eeee-------ee--------eeeeccccceEehhhhcCcceeeeeeccccc
Confidence 00000 0000000011111 1111 11 1233899999999999999999999999999
Q ss_pred EEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 005656 277 KVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s 354 (685)
.+||++++.++..+..+ ...+.++-+|..+++++++.|.+.++||.+.. ..+..|.||+..|+++.|.-|. .+++|+
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgS 375 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGS 375 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecC
Confidence 99999999999988766 78899999999999999999999999999844 5678899999999999999765 589999
Q ss_pred CCCcEEEEEcCCC-ceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 355 MDGSLRIWDVILA-RQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 355 ~Dg~I~iwd~~~~-~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
.|.+|+|||++.. .++.+++..++++.++.+..++.+|.-+.+. .|++|++..
T Consensus 376 DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNR-qvRlfDlnG 429 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNR-QVRLFDLNG 429 (481)
T ss_pred CCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCc-eEEEEecCC
Confidence 9999999999864 5789999999999999999999999998775 999999643
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.8e-25 Score=200.93 Aligned_cols=282 Identities=15% Similarity=0.239 Sum_probs=213.3
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
-.|+.|++.|. +||+|+.||.|.|||+.+...-+.+. +|..+|.+++||+||+.|+|+|.|..|++||+..++ +
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs----~ 99 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS----P 99 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCC----c
Confidence 57999999999 99999999999999999998777776 999999999999999999999999999999998874 3
Q ss_pred eEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
+..+ ....+|+.+.|+|-.. ..+.+-.+..-.+.++..... ..+..
T Consensus 100 l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~------------------------------- 146 (405)
T KOG1273|consen 100 LKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPK------------------------------- 146 (405)
T ss_pred eeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccC-------------------------------
Confidence 3332 3578999999999533 333332233333333322110 00000
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
...........+..|.+.|+++++|+..|.+.+||..+-+++..+..
T Consensus 147 --------------------------------d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri- 193 (405)
T KOG1273|consen 147 --------------------------------DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI- 193 (405)
T ss_pred --------------------------------CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee-
Confidence 00001122334457899999999999999999999999988877642
Q ss_pred cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-------ceE--EEee---cCCceeEEEEeecCCEEEEE
Q 005656 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------DLK--SRWE---VGCSLVKIVYHRVNGLLATV 311 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~--~~~~---~~~~i~~~~~~~~~~~l~~~ 311 (685)
.....|..+.++..|+.++.-+.|..|+.|+++.- .+. +.+. ....=.+++|+.+|.+++.+
T Consensus 194 ------ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 194 ------TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred ------chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence 22368899999999999999999999999998621 111 1111 11344678999999988877
Q ss_pred eC-CCeEEEEEcCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 312 AD-DLVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 312 ~~-dg~I~i~d~~~~~~~~~~~~h~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
+. -..++||.-..|.+++.+.|.. ....++.|+|-...+++- ..|.|+||...
T Consensus 268 s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 268 SARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred cccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 64 4689999999999999999887 567899999988888877 67899999854
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=198.65 Aligned_cols=249 Identities=19% Similarity=0.275 Sum_probs=196.3
Q ss_pred EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCce
Q 005656 39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAF 116 (685)
Q Consensus 39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i 116 (685)
.++...|.+.|..+...--|+.|+|++.|++|+|+.+....+ ..++..+.||.+||+.++|.. .|..|++++.||.|
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 344458999999999888899999999999999999876533 467888999999999999965 59999999999999
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
.||.-.+++-.+..
T Consensus 83 IiWke~~g~w~k~~------------------------------------------------------------------ 96 (299)
T KOG1332|consen 83 IIWKEENGRWTKAY------------------------------------------------------------------ 96 (299)
T ss_pred EEEecCCCchhhhh------------------------------------------------------------------
Confidence 99986544211100
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEECCC
Q 005656 197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHG 274 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg 274 (685)
....|...|++++|.|. |-.|++++.||
T Consensus 97 --------------------------------------------------e~~~h~~SVNsV~wapheygl~LacasSDG 126 (299)
T KOG1332|consen 97 --------------------------------------------------EHAAHSASVNSVAWAPHEYGLLLACASSDG 126 (299)
T ss_pred --------------------------------------------------hhhhhcccceeecccccccceEEEEeeCCC
Confidence 11178889999999886 45788889999
Q ss_pred eEEEEECCCC-c---eEEEeecCCceeEEEEeec---C-----------CEEEEEeCCCeEEEEEcCCC--eeEEEEecC
Q 005656 275 DIKVWDFKGR-D---LKSRWEVGCSLVKIVYHRV---N-----------GLLATVADDLVIRLFDVVAL--RMVRKFEGH 334 (685)
Q Consensus 275 ~i~iwd~~~~-~---~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h 334 (685)
.|.+.++++. . ......|.-.+++++|.|. | +.|++|+.|..|+||+..++ +.-++|.+|
T Consensus 127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H 206 (299)
T KOG1332|consen 127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH 206 (299)
T ss_pred cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc
Confidence 9999988754 1 1112234467888999886 3 56999999999999999875 445568999
Q ss_pred CCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcCCC--ceeeEE--eeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 335 TDRITDFCFSEDG----KWLLSSGMDGSLRIWDVILA--RQIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 335 ~~~I~~l~~spdg----~~l~s~s~Dg~I~iwd~~~~--~~i~~~--~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
.+.|.+++|.|.- .+||++|.||+|.||..... .-..++ .++..+..++||+.|.+|++++.|. .|.+|.
T Consensus 207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN-kvtlwk 284 (299)
T KOG1332|consen 207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN-KVTLWK 284 (299)
T ss_pred chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc-EEEEEE
Confidence 9999999999953 48999999999999987521 111111 2456699999999999999999885 999996
No 132
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=9.5e-25 Score=216.03 Aligned_cols=281 Identities=16% Similarity=0.282 Sum_probs=219.9
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc--EEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~D~~v~iWd~~~~ 78 (685)
|+|.|.||+..|.|. +||+|+.||+|+||.+.+|+++.++. ..+.|.|++|+|.+. .||++-.+ .+.|-+..-+
T Consensus 399 Htg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G 474 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFG 474 (733)
T ss_pred cCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecC-ceEEeCcccc
Confidence 899999999999999 99999999999999999999999986 678999999999775 44444332 2333322111
Q ss_pred ---------------------------------CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEee
Q 005656 79 ---------------------------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVI 122 (685)
Q Consensus 79 ---------------------------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~ 122 (685)
+...+-++..-.|..+|..+.|+..|.||++...+ ..|.|.++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 11111122334578899999999999999987664 356666654
Q ss_pred cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656 123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 202 (685)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 202 (685)
..... .+.....
T Consensus 555 K~~sQ--------------------------------------------------------------------~PF~ksk 566 (733)
T KOG0650|consen 555 KRKSQ--------------------------------------------------------------------SPFRKSK 566 (733)
T ss_pred ccccc--------------------------------------------------------------------CchhhcC
Confidence 33221 1222456
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 282 (685)
+.+.++.|+|...++++++.. .|++||+..+..+..+. .....|..++++|.|..|+.++.|+.+..+|+.
T Consensus 567 G~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~--------tg~kwiS~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL--------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred CceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh--------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 789999999999999998765 59999999887777664 566789999999999999999999999999998
Q ss_pred CC-ceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcC------C---CeeEEEEecCCCC----eEEEEEcCCC
Q 005656 283 GR-DLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVV------A---LRMVRKFEGHTDR----ITDFCFSEDG 347 (685)
Q Consensus 283 ~~-~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~------~---~~~~~~~~~h~~~----I~~l~~spdg 347 (685)
-. ++.+++.++ ..++.++||+.-.++++|+.||++.||.-. . --++..++||... |.++.|+|..
T Consensus 638 lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q 717 (733)
T KOG0650|consen 638 LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ 717 (733)
T ss_pred cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC
Confidence 43 455555554 789999999999999999999999998532 1 1456778899766 8999999999
Q ss_pred CEEEEEeCCCcEEEE
Q 005656 348 KWLLSSGMDGSLRIW 362 (685)
Q Consensus 348 ~~l~s~s~Dg~I~iw 362 (685)
.||++++.||+|++|
T Consensus 718 pWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 718 PWLFSAGADGTIRLF 732 (733)
T ss_pred ceEEecCCCceEEee
Confidence 999999999999998
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.4e-24 Score=195.55 Aligned_cols=289 Identities=20% Similarity=0.291 Sum_probs=222.2
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe------------ee--EEeecccccCeeEEEEeC-CCcEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR------------LQ--SVIREAHDNAIISLHFFA-NEPVLMSAS 65 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~------------~~--~~~~~~h~~~V~~l~~sp-~~~~l~s~s 65 (685)
|.|.|+++...+....++++|+.||.|.|||++... ++ ..-..+|.-.|.++.|.| |...+.+++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 889999999998644499999999999999997532 10 111247889999999999 445888889
Q ss_pred CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC---CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656 66 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 142 (685)
Q Consensus 66 ~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 142 (685)
.|.++++||.++- +....+ ...+.|.+-+++|- ..++++|..|-.|++-|+..+.....+.
T Consensus 122 FDhtlKVWDtnTl----Q~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls----------- 185 (397)
T KOG4283|consen 122 FDHTLKVWDTNTL----QEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS----------- 185 (397)
T ss_pred ccceEEEeecccc----eeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-----------
Confidence 9999999998876 333222 34566777777773 4467788888999999999998777765
Q ss_pred cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE-EEEEe
Q 005656 143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF-AVLGT 221 (685)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~ 221 (685)
+|...|.++.|+|...+ |++|+
T Consensus 186 ---------------------------------------------------------GHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 186 ---------------------------------------------------------GHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred ---------------------------------------------------------cccCceEEEEeccCceeEEEecC
Confidence 88999999999998876 57899
Q ss_pred cCCcEEEEECCCC-ccccccc-----cc-cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE-e---
Q 005656 222 AGGWIERFNLQSG-ISRGSYL-----DM-SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-W--- 290 (685)
Q Consensus 222 ~dg~i~~~d~~~~-~~~~~~~-----~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~--- 290 (685)
.||.|++||++.. .+...+. .. ......+|.+.|.+++|..++.++++++.|..+++|+..+|+-... +
T Consensus 209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~ 288 (397)
T KOG4283|consen 209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI 288 (397)
T ss_pred CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc
Confidence 9999999999754 1111111 11 1113458999999999999999999999999999999987643211 1
Q ss_pred ----ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 291 ----EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 291 ----~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
..+-.+. +. +-+...++.--.++.+.++.+-.+..++.+.+|-..|.+.++-|+-+...+++.|+.|..|-.
T Consensus 289 ~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 289 IHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 1111111 22 334445555555699999999999999999999989999999999999999999999999975
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=4.3e-24 Score=193.90 Aligned_cols=283 Identities=16% Similarity=0.263 Sum_probs=221.8
Q ss_pred ccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCCCC--------Cce---eEecccCCCCCeEEEEec-CCCEEEEE
Q 005656 44 AHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGD--------PRL---LRFRSGHSAPPLCIRFYA-NGRHILSA 110 (685)
Q Consensus 44 ~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~--------~~~---~~~~~~h~~~v~~i~~~~-~~~~l~s~ 110 (685)
.|.+.|+++...+ .|+++++|+.||.|.+||+...+.. ..+ .....+|...|..+.|.| |...+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 7999999999988 5789999999999999999765411 111 122357889999999999 55678889
Q ss_pred eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCcccc
Q 005656 111 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 190 (685)
Q Consensus 111 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 190 (685)
+-|.+++|||+.+-+....+
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F------------------------------------------------------------ 140 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDF------------------------------------------------------------ 140 (397)
T ss_pred cccceEEEeecccceeeEEe------------------------------------------------------------
Confidence 99999999999887765555
Q ss_pred CceeecCCCCCCCCeEEEEEccC---CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCE-
Q 005656 191 GEHILRPCPENPTAVKACTISAC---GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL- 266 (685)
Q Consensus 191 ~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~- 266 (685)
..++.|.+-++||- -..+++|+.+-.|++.|+++|.....+. +|.+.|.++.|+|...+
T Consensus 141 ---------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--------GHr~~vlaV~Wsp~~e~v 203 (397)
T KOG4283|consen 141 ---------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--------GHRDGVLAVEWSPSSEWV 203 (397)
T ss_pred ---------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec--------cccCceEEEEeccCceeE
Confidence 23455666666663 3578899999999999999999988876 99999999999998875
Q ss_pred EEEEECCCeEEEEECCCC-ceEEEe---------------ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE
Q 005656 267 MISAGYHGDIKVWDFKGR-DLKSRW---------------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK 330 (685)
Q Consensus 267 l~s~s~dg~i~iwd~~~~-~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~ 330 (685)
|++|+.||.|++||++.. .+...+ .+.+.+..++|..++.++++++.|..+++|+..+|+....
T Consensus 204 LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~ 283 (397)
T KOG4283|consen 204 LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLR 283 (397)
T ss_pred EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccc
Confidence 688999999999999853 222222 2336789999999999999999999999999988754221
Q ss_pred -Ee--cCCCC----eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEE
Q 005656 331 -FE--GHTDR----ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVY 402 (685)
Q Consensus 331 -~~--~h~~~----I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~ 402 (685)
+- .|+.. +. +. +-+...++---.++.+.++++-+|..+..+..|.. +.|.++-|+-+...++..|+ .|+
T Consensus 284 ~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~-ni~ 360 (397)
T KOG4283|consen 284 EFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNG-NIY 360 (397)
T ss_pred ccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCC-ccc
Confidence 11 12221 11 22 33444555555678999999999999999988765 99999999999999999998 799
Q ss_pred EEEc
Q 005656 403 LWVN 406 (685)
Q Consensus 403 lW~~ 406 (685)
.|..
T Consensus 361 ~w~p 364 (397)
T KOG4283|consen 361 MWSP 364 (397)
T ss_pred cccc
Confidence 9975
No 135
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=182.73 Aligned_cols=248 Identities=20% Similarity=0.317 Sum_probs=197.0
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee-----eEEeecccccCeeEEEEeCC----CcEEEEecCCCcEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-----QSVIREAHDNAIISLHFFAN----EPVLMSASADNSIK 71 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~-----~~~~~~~h~~~V~~l~~sp~----~~~l~s~s~D~~v~ 71 (685)
|+|.|.|.+|||+|+ ++|||+.|.+|++.-++...+ -..+. -|++.|..++|..+ +.+|++++. |..+
T Consensus 88 hkgsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga-gdc~ 164 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA-GDCK 164 (350)
T ss_pred cCccEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC-Ccce
Confidence 899999999999999 999999999999986654332 12333 69999999999764 457777664 4445
Q ss_pred EEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656 72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 151 (685)
Q Consensus 72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (685)
||..+-+.+ +.+..+.||.+-|.++ ++-+|-.+++|+.|.+|++||++-..++..+.....
T Consensus 165 iy~tdc~~g--~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~---------------- 225 (350)
T KOG0641|consen 165 IYITDCGRG--QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH---------------- 225 (350)
T ss_pred EEEeecCCC--CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCccc----------------
Confidence 554444333 6677889999999876 344688999999999999999987776665532100
Q ss_pred CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 005656 152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 231 (685)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~ 231 (685)
...-..+.|.++++.|.|+.+++|..|....+||+
T Consensus 226 ---------------------------------------------~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 226 ---------------------------------------------DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred ---------------------------------------------CCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 00012467899999999999999999999999999
Q ss_pred CCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-----ceEEEeecCCceeEEEEeecCC
Q 005656 232 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCSLVKIVYHRVNG 306 (685)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~ 306 (685)
+.+..++.|- .|...|+|+.|+|...++++|+.|..|++-|+... .....-++...+..+.|+|..-
T Consensus 261 rg~r~iq~f~--------phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~ 332 (350)
T KOG0641|consen 261 RGGRMIQRFH--------PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF 332 (350)
T ss_pred eCCceeeeeC--------CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc
Confidence 9999998875 89999999999999999999999999999998743 1222334557888999999999
Q ss_pred EEEEEeCCCeEEEEEcC
Q 005656 307 LLATVADDLVIRLFDVV 323 (685)
Q Consensus 307 ~l~~~~~dg~I~i~d~~ 323 (685)
-+++.+.|.++.+|-+.
T Consensus 333 sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 333 SFISSSADKTATLWALN 349 (350)
T ss_pred eeeeccCcceEEEeccC
Confidence 99999999999999753
No 136
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=2.6e-24 Score=213.84 Aligned_cols=387 Identities=18% Similarity=0.240 Sum_probs=263.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeE-----EeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS-----VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 75 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~-----~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~ 75 (685)
|.+.|+.+.|+|-...+||||+.|..|+||.+..+.... ....+-.-.|-++.|+|...-|+..+.-|+++|||+
T Consensus 78 H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~ 157 (1012)
T KOG1445|consen 78 HGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDI 157 (1012)
T ss_pred ccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEc
Confidence 788899999999766699999999999999998543211 222233457889999997665555556789999999
Q ss_pred cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
.++ +.+..+.+|...|.++.|+.||..|++++.|..|+|||.+..........++...+..+
T Consensus 158 stq----k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsR-------------- 219 (1012)
T KOG1445|consen 158 STQ----KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSR-------------- 219 (1012)
T ss_pred ccC----ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhhe--------------
Confidence 988 77788899999999999999999999999999999999876544333323222211111
Q ss_pred eeecccccccCCcceEEEEcCC---ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE-EecCCcEEEEEC
Q 005656 156 AFDCAEIRERDWCNVVTCHMDT---AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTAGGWIERFNL 231 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~~~d~ 231 (685)
......|..+++.+... ..+++||.+......+.+.. .....+.---+.||.+.++. |-.+..++.+.+
T Consensus 220 -----v~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tlel--d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 220 -----VLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLEL--DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred -----eeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEe--ecccceEeeeecCCCceEEEecCCcceEEEEEe
Confidence 11223455566555543 56778888876655544433 22334555566777766544 344556666666
Q ss_pred CCCcccccc------ccc-------------------------c------------------------------------
Q 005656 232 QSGISRGSY------LDM-------------------------S------------------------------------ 244 (685)
Q Consensus 232 ~~~~~~~~~------~~~-------------------------~------------------------------------ 244 (685)
+..+..-.- ... .
T Consensus 293 ~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~a 372 (1012)
T KOG1445|consen 293 QDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTA 372 (1012)
T ss_pred cCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCc
Confidence 543221000 000 0
Q ss_pred --------------------------------------------------------------------------------
Q 005656 245 -------------------------------------------------------------------------------- 244 (685)
Q Consensus 245 -------------------------------------------------------------------------------- 244 (685)
T Consensus 373 geWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~ 452 (1012)
T KOG1445|consen 373 GEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEV 452 (1012)
T ss_pred cceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 005656 245 -------------------------------------------------------------------------------- 244 (685)
Q Consensus 245 -------------------------------------------------------------------------------- 244 (685)
T Consensus 453 r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~s 532 (1012)
T KOG1445|consen 453 RELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPIS 532 (1012)
T ss_pred hhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcc
Confidence
Q ss_pred --------------------------ccccCCCCcC----EEEE---------EEcCCCCEEEE--EECCCeEEEEECCC
Q 005656 245 --------------------------ERSNYAHNGE----VVGV---------ACDSTNTLMIS--AGYHGDIKVWDFKG 283 (685)
Q Consensus 245 --------------------------~~~~~~h~~~----v~~l---------~~~~~~~~l~s--~s~dg~i~iwd~~~ 283 (685)
.....+|.+. ...+ -|+.++.++++ ++..|.|-||+++.
T Consensus 533 at~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~ 612 (1012)
T KOG1445|consen 533 ATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNE 612 (1012)
T ss_pred ccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCC
Confidence 0000000000 0000 01112222222 23456777777763
Q ss_pred -Cce----EEEeecCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCC-------eeEEEEecCCCCeEEEEEcC-CCCE
Q 005656 284 -RDL----KSRWEVGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVAL-------RMVRKFEGHTDRITDFCFSE-DGKW 349 (685)
Q Consensus 284 -~~~----~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~I~i~d~~~~-------~~~~~~~~h~~~I~~l~~sp-dg~~ 349 (685)
|++ +-.+..+..|+.+.|.|- ...||++++||.|++|.+..+ .+-..+.+|...|+.+.|+| -...
T Consensus 613 PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadv 692 (1012)
T KOG1445|consen 613 PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADV 692 (1012)
T ss_pred CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhH
Confidence 221 223334577899999984 559999999999999998754 44567889999999999999 4568
Q ss_pred EEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCCC
Q 005656 350 LLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGD 413 (685)
Q Consensus 350 l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~~ 413 (685)
|++++.|.+|++||+.+++....+..|.. |.+++|||||+.+|+.+.|| .|++|..+..-.++
T Consensus 693 La~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG-TLRVYEPRSREQPV 756 (1012)
T ss_pred hhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc-eEEEeCCCCCCCcc
Confidence 99999999999999999999888887766 99999999999999999998 99999877665544
No 137
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.9e-25 Score=193.12 Aligned_cols=248 Identities=15% Similarity=0.194 Sum_probs=196.0
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC---eeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEEe
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIF 75 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd~ 75 (685)
|++.|..+...--|+ .|||+++|++|+|+.+.+. +++..+. ||.++|..++|.. -|.+||+++.||.|.||.-
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 666777777777888 9999999999999998764 5677887 9999999999987 7899999999999999965
Q ss_pred cCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 76 DTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
..+ ..........|...|++++|.|. |-.|++++.||.|.|.+......-..-
T Consensus 88 ~~g--~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~----------------------- 142 (299)
T KOG1332|consen 88 ENG--RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS----------------------- 142 (299)
T ss_pred CCC--chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch-----------------------
Confidence 544 55666677889999999999996 778999999999999988655111000
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC---C-----------CEEEE
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---G-----------NFAVL 219 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g-----------~~l~~ 219 (685)
+....|.-.+.+++|.|. | +.|++
T Consensus 143 ------------------------------------------ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS 180 (299)
T KOG1332|consen 143 ------------------------------------------KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS 180 (299)
T ss_pred ------------------------------------------hhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence 001145666777777775 4 56999
Q ss_pred EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC----CEEEEEECCCeEEEEECCCC--ceEEE--ee
Q 005656 220 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN----TLMISAGYHGDIKVWDFKGR--DLKSR--WE 291 (685)
Q Consensus 220 g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~s~dg~i~iwd~~~~--~~~~~--~~ 291 (685)
|+.|..|.+|+..++.-...- ...+|.+.|+.++|.|.. .+|++|+.||++.||..... .-..+ -.
T Consensus 181 gGcDn~VkiW~~~~~~w~~e~------~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 181 GGCDNLVKIWKFDSDSWKLER------TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred cCCccceeeeecCCcchhhhh------hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 999999999999987433221 234999999999999964 57999999999999987632 11111 12
Q ss_pred cCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 005656 292 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVV 323 (685)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~ 323 (685)
.+..+..+.|++.|++|++++.|+.|.+|--.
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 35789999999999999999999999999644
No 138
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.8e-24 Score=205.30 Aligned_cols=267 Identities=17% Similarity=0.279 Sum_probs=217.8
Q ss_pred eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 164 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (685)
+.....|..+|++++++|++++.++++.+|+|.-|++.+++....+.......+..
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~------------------------ 190 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSH------------------------ 190 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhc------------------------
Confidence 45567899999999999999999999999999999999887653332111000000
Q ss_pred cCCcceEEEEcCCceEEEEEcCccccCceeecCC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656 165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC-PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
+ ..+.+. ..|...+.++++|+||+|+++|..|..|.+|+.++..++..+.
T Consensus 191 --------------------------~-~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-- 241 (479)
T KOG0299|consen 191 --------------------------G-NPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK-- 241 (479)
T ss_pred --------------------------c-CCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc--
Confidence 0 001111 2677889999999999999999999999999999999998875
Q ss_pred cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe-ecCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 322 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~ 322 (685)
+|.+.|.+++|-.....+++++.|++|++|++.....+.++ .|...|..+.....++.+-+|+.|.++++|++
T Consensus 242 ------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi 315 (479)
T KOG0299|consen 242 ------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI 315 (479)
T ss_pred ------ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEec
Confidence 99999999999888888999999999999999987766554 45588999998888889999999999999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-------------ccceEEEEEcCCCC
Q 005656 323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-------------DVSITALSLSPNMD 389 (685)
Q Consensus 323 ~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-------------~~~v~~v~~spdg~ 389 (685)
.. +.--.+.+|.+.+-|++|-.+ ..+++||++|.|.+|++...+++.+.+. +..|++++..|..+
T Consensus 316 ~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd 393 (479)
T KOG0299|consen 316 PE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD 393 (479)
T ss_pred cc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc
Confidence 43 334457889999999999854 5799999999999999999988877642 11488999999999
Q ss_pred eEEEEEeCCCeEEEEEcCCCcCCC
Q 005656 390 VLATAHVDQNGVYLWVNRCMFSGD 413 (685)
Q Consensus 390 ~Lat~~~d~~~I~lW~~~~~~~~~ 413 (685)
++|+|+.+| .|++|.....|...
T Consensus 394 L~asGS~~G-~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 394 LLASGSWSG-CVRLWKIEDGLRAI 416 (479)
T ss_pred eEEecCCCC-ceEEEEecCCcccc
Confidence 999999998 99999876665433
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=221.04 Aligned_cols=288 Identities=16% Similarity=0.264 Sum_probs=220.0
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe----eeEEeec--ccccCeeEEEEeC-CCcEEEEecCCCcEEEEE
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR----LQSVIRE--AHDNAIISLHFFA-NEPVLMSASADNSIKMWI 74 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~----~~~~~~~--~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd 74 (685)
+++.++|+..++-..+++.|- ..+.||.+.... +....+. .-...+..+.|.. +.++|||++..|.|.+||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCcceeEEecc--cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 356778888888763444442 456777665422 1111110 1112355677764 457999999999999999
Q ss_pred ecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
+... ...+.+..+..|...++++.|++. ..+|++||.||+|++||++..+....+.
T Consensus 117 lnk~-~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~---------------------- 173 (839)
T KOG0269|consen 117 LNKS-IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR---------------------- 173 (839)
T ss_pred cCcc-ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc----------------------
Confidence 9874 233666778899999999999985 5689999999999999998776544432
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECC
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQ 232 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~ 232 (685)
.....|+.+.|+| .++.++++.++|.+.+||++
T Consensus 174 ----------------------------------------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 174 ----------------------------------------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred ----------------------------------------------ccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 3456788999998 67899999999999999998
Q ss_pred CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEEEeecCCceeEEEEeecCC-EEE
Q 005656 233 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVGCSLVKIVYHRVNG-LLA 309 (685)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~ 309 (685)
....-.. ...+|.++|.|+.|+|++.+|||||.|+.|+|||..+.+ .+.++....++.++.|-|... .||
T Consensus 208 qp~r~~~-------k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLA 280 (839)
T KOG0269|consen 208 QPDRCEK-------KLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLA 280 (839)
T ss_pred CchhHHH-------HhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhh
Confidence 6543222 223999999999999999999999999999999998654 455666679999999999877 566
Q ss_pred EEe--CCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 005656 310 TVA--DDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 310 ~~~--~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~ 367 (685)
+++ .|-.|+|||++.. -+.+++..|...++.++|-. |...+.+++.||+|.--.++++
T Consensus 281 tcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 281 TCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred hhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 665 4779999999865 56778889999999999965 4557889999998876665544
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=6.5e-24 Score=211.88 Aligned_cols=314 Identities=17% Similarity=0.191 Sum_probs=217.8
Q ss_pred EEEcc--CCCCEEEEEeCCCcEEEEeCCCCeee------EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656 8 LAFSS--DGQPLLASGASSGVISIWNLEKRRLQ------SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 79 (685)
Q Consensus 8 l~fsp--dg~~~latg~~dg~I~vwd~~~~~~~------~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~ 79 (685)
..|++ ..+++||.+..+|.|.++|....... .... .|...|..+.|.|....|++++.|.++++||+...
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s- 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS- 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccc-cccceeEeeccCCCceeEEEccCCceeeeeeeccc-
Confidence 55654 34579999999999999998764433 3333 89999999999997779999999999999999887
Q ss_pred CCCceeE--ecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656 80 GDPRLLR--FRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 156 (685)
Q Consensus 80 ~~~~~~~--~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
++.. .+.||.+.|.+++|.|. ...|++|+.||.|.|||++........ .....+.... ...| ..
T Consensus 133 ---~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e------~~~~~~~~~~---n~~p-tp 199 (720)
T KOG0321|consen 133 ---RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALE------EFDNRIYGRH---NTAP-TP 199 (720)
T ss_pred ---eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHH------HHhhhhhccc---cCCC-CC
Confidence 3333 36799999999999996 457889999999999999765411100 0000000000 0000 00
Q ss_pred eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE---EEEccCCCEEEEEec-CCcEEEEECC
Q 005656 157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA---CTISACGNFAVLGTA-GGWIERFNLQ 232 (685)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~~g~~l~~g~~-dg~i~~~d~~ 232 (685)
..+. .........+...+.+ +.+..|...|++++. |+.|++||++
T Consensus 200 skp~-------------------------------~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 200 SKPL-------------------------------KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred Cchh-------------------------------hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 0000 0000001122333333 556667777877776 9999999999
Q ss_pred CCccccccccccccccCCC---CcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEEEeecC---CceeEEEEeec
Q 005656 233 SGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG---CSLVKIVYHRV 304 (685)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~---~~i~~~~~~~~ 304 (685)
..................| .-.+.++..+..|.++.+.+.|+.|++||+.+.. ++..+.+. .-...-..+|+
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 8766544433322233344 4568889999999988888889999999998643 23333222 22334567899
Q ss_pred CCEEEEEeCCCeEEEEEcCCCe-eEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC
Q 005656 305 NGLLATVADDLVIRLFDVVALR-MVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 305 ~~~l~~~~~dg~I~i~d~~~~~-~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~ 367 (685)
+.++++|+.|...++|.+.+.+ ....+.||.-.|++++|.|.. .-+++++.|.+++||++..+
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999999999999999998864 456678999999999998732 34777799999999999654
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7e-23 Score=187.45 Aligned_cols=286 Identities=15% Similarity=0.256 Sum_probs=211.0
Q ss_pred EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCce
Q 005656 39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAF 116 (685)
Q Consensus 39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i 116 (685)
..+..+|.+-|+++.|.+.|+.+|||+.|++|+|||.+..++.+.+-...+.|.+.|..+.|.+. |+.+++++.|+++
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 34455899999999999999999999999999999998888889999999999999999999663 9999999999999
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
.||.-.... ... .-+-|.. ..
T Consensus 86 ~iWEE~~~~----~~~----------------------------------------------~~~~Wv~---------~t 106 (361)
T KOG2445|consen 86 SIWEEQEKS----EEA----------------------------------------------HGRRWVR---------RT 106 (361)
T ss_pred eeeeecccc----ccc----------------------------------------------ccceeEE---------EE
Confidence 999743111 000 0001110 11
Q ss_pred CCCCCCCCeEEEEEcc--CCCEEEEEecCCcEEEEECCCCcccc------ccccccccccCCCCcCEEEEEEcCCC---C
Q 005656 197 PCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISRG------SYLDMSERSNYAHNGEVVGVACDSTN---T 265 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~~~d~~~~~~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~---~ 265 (685)
......+.|+.+.|.| -|-.+++++.||.+++|+........ .+.... .....+..+..|+.|+|.. .
T Consensus 107 tl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~-~pp~~~~~~~~CvsWn~sr~~~p 185 (361)
T KOG2445|consen 107 TLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI-DPPGKNKQPCFCVSWNPSRMHEP 185 (361)
T ss_pred EeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc-CCcccccCcceEEeeccccccCc
Confidence 1125577899999998 57789999999999999875432221 111111 1222567788999999753 5
Q ss_pred EEEEEECC-----CeEEEEECCCCc--e--EEEe-ecCCceeEEEEeecCC----EEEEEeCCCeEEEEEcCCC------
Q 005656 266 LMISAGYH-----GDIKVWDFKGRD--L--KSRW-EVGCSLVKIVYHRVNG----LLATVADDLVIRLFDVVAL------ 325 (685)
Q Consensus 266 ~l~s~s~d-----g~i~iwd~~~~~--~--~~~~-~~~~~i~~~~~~~~~~----~l~~~~~dg~I~i~d~~~~------ 325 (685)
+|+.|+.+ +.++||....+. . +.++ .+..+|+.++|.|+-. +||+++.|| |+||.+...
T Consensus 186 ~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ 264 (361)
T KOG2445|consen 186 LIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEE 264 (361)
T ss_pred eEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhh
Confidence 67777755 478898876432 2 2222 3458999999999743 899999999 999998731
Q ss_pred --------------eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CceeeEEeeccceEEEEEc
Q 005656 326 --------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL---ARQIDAIHVDVSITALSLS 385 (685)
Q Consensus 326 --------------~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~---~~~i~~~~~~~~v~~v~~s 385 (685)
+.+..+.+|++.|..+.|+-.|..|++.|.||.||+|...- .++...+.....++...|+
T Consensus 265 ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~ 341 (361)
T KOG2445|consen 265 EEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFS 341 (361)
T ss_pred hcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCcccc
Confidence 34566789999999999999999999999999999997643 3455555555445444443
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2e-23 Score=206.68 Aligned_cols=321 Identities=14% Similarity=0.187 Sum_probs=235.4
Q ss_pred eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCce
Q 005656 38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAF 116 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i 116 (685)
-..++ ||++.|.++...|.|.+|++|+.||+|+||.+.++ ++++... ..+.|.|++|+|.+. .++.+..++.+
T Consensus 393 ~lvyr-GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 393 ALVYR-GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeeEe-ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----eEEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence 33455 99999999999999999999999999999999998 7877753 456899999999754 33344444446
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
.+.+..-+........... +...| .-......+..|.-........-+.
T Consensus 467 ~ivnp~~G~~~e~~~t~el-------------l~~~~------------------~~~~p~~~~~~W~~~~~~e~~~~v~ 515 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKEL-------------LASAP------------------NESEPDAAVVTWSRASLDELEKGVC 515 (733)
T ss_pred EEeCccccchhhhcchhhh-------------hhcCC------------------CccCCcccceeechhhhhhhccceE
Confidence 6665544422111100000 00000 0011223556676553322221122
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC
Q 005656 197 PCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 273 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 273 (685)
....+...|..+.|+..|.|+++...+ ..|.++++..+.....|. ...+.|.++.|+|...++++++.
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~--------kskG~vq~v~FHPs~p~lfVaTq- 586 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR--------KSKGLVQRVKFHPSKPYLFVATQ- 586 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh--------hcCCceeEEEecCCCceEEEEec-
Confidence 222678899999999999999987664 468888887766655443 55678999999999988888874
Q ss_pred CeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656 274 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLL 351 (685)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~ 351 (685)
..|++||+..+.++..+..+ ..|..++.+|.|..|++|+.|+.+..||+.-. ++.++++-|...+++++|++.-.+++
T Consensus 587 ~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa 666 (733)
T KOG0650|consen 587 RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA 666 (733)
T ss_pred cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee
Confidence 78999999987776655544 67899999999999999999999999999854 78888999999999999999999999
Q ss_pred EEeCCCcEEEEEc------CCCc---eeeEEeecc-----ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 352 SSGMDGSLRIWDV------ILAR---QIDAIHVDV-----SITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 352 s~s~Dg~I~iwd~------~~~~---~i~~~~~~~-----~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+|+.||++.||.- -..- ++..+++|. .|..+.|+|...+|++++.|+ +|++|.
T Consensus 667 s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~-tirlfT 733 (733)
T KOG0650|consen 667 SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG-TIRLFT 733 (733)
T ss_pred eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc-eEEeeC
Confidence 9999999999842 1222 223344332 388889999999999999997 999993
No 143
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=3.5e-23 Score=199.61 Aligned_cols=254 Identities=19% Similarity=0.335 Sum_probs=195.6
Q ss_pred cccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCc------eeEecccCCCCCeEEEEecC-CCEEEEEeCCC
Q 005656 43 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPR------LLRFRSGHSAPPLCIRFYAN-GRHILSAGQDR 114 (685)
Q Consensus 43 ~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~------~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg 114 (685)
..|.+.|+.+.+.|..+ ++++.+..+.|.|||+......+. +-..+.||...-.+++|++. ..+|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 36999999999999766 667778889999999977644332 23366789988888999985 45899999999
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
+|++||+.........
T Consensus 201 ~i~lwdi~~~~~~~~~---------------------------------------------------------------- 216 (422)
T KOG0264|consen 201 TICLWDINAESKEDKV---------------------------------------------------------------- 216 (422)
T ss_pred cEEEEeccccccCCcc----------------------------------------------------------------
Confidence 9999998543211000
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECC
Q 005656 195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYH 273 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~d 273 (685)
+ ..+. ...+|...|..++|++.. ..+++++.|
T Consensus 217 ----------~-----------------------------~p~~--------~~~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 217 ----------V-----------------------------DPKT--------IFSGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred ----------c-----------------------------cceE--------EeecCCcceehhhccccchhhheeecCC
Confidence 0 0000 112899999999999965 578899999
Q ss_pred CeEEEEECCC--CceEEEee-cCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCC-
Q 005656 274 GDIKVWDFKG--RDLKSRWE-VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG- 347 (685)
Q Consensus 274 g~i~iwd~~~--~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg- 347 (685)
+.+.|||+++ .++..... +.+.+.|++|+|-+. +||+|+.|++|.+||+++. +++.++.+|...|..+.|||+.
T Consensus 250 ~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE 329 (422)
T ss_pred CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC
Confidence 9999999994 44444333 458999999999765 8899999999999999975 6788999999999999999965
Q ss_pred CEEEEEeCCCcEEEEEcCCCce--------------eeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 348 KWLLSSGMDGSLRIWDVILARQ--------------IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 348 ~~l~s~s~Dg~I~iwd~~~~~~--------------i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
..||+++.|+.+.|||+..-.. +..-.+|.. |..+.|+|...+++++-.++|.+.||...
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 5888999999999999864221 122223333 99999999998777666666799999754
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=195.67 Aligned_cols=291 Identities=15% Similarity=0.187 Sum_probs=222.0
Q ss_pred CCCcEEEEEEccCCC-CEEEEEeCCCcEEEEeCCCC---e-eeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEE
Q 005656 1 MRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR---R-LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWI 74 (685)
Q Consensus 1 h~~~V~~l~fspdg~-~~latg~~dg~I~vwd~~~~---~-~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd 74 (685)
|.++|++++|+|... .++|+|...|.|-+||+.+. . -+..+ ..|.++|.++.|+|.. ..+++.|.||+|+.-|
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCChhheeeeccCceeeeee
Confidence 568999999999765 69999999999999999522 1 23333 4899999999999965 4888999999999999
Q ss_pred ecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
++.... ..+............+.|+.+...++.+..=|.+.+||++++......
T Consensus 264 ~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~------------------------ 317 (498)
T KOG4328|consen 264 FEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN------------------------ 317 (498)
T ss_pred ecchhh--HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh------------------------
Confidence 986522 223333334556677888888888888888889999999877542211
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCC
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQS 233 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~ 233 (685)
..-|...|++++++|.. .++++++.|++.++||++.
T Consensus 318 -------------------------------------------~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 318 -------------------------------------------LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred -------------------------------------------hhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence 11445589999999955 6789999999999999987
Q ss_pred CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC----CCceEEEeecC------CceeEEEEee
Q 005656 234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK----GRDLKSRWEVG------CSLVKIVYHR 303 (685)
Q Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~~------~~i~~~~~~~ 303 (685)
-..... +......|...|.+..|+|.+-.|++.+.|..|+|||.. .-.+..++.|. -......|.|
T Consensus 355 l~~K~s----p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P 430 (498)
T KOG4328|consen 355 LRGKAS----PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP 430 (498)
T ss_pred hcCCCC----cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC
Confidence 655443 011344899999999999998889999999999999983 44555566554 2345678999
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC-CeEE-EEEcCCCCEEE-EEeCCCcEEEEEcC
Q 005656 304 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTD-RITD-FCFSEDGKWLL-SSGMDGSLRIWDVI 365 (685)
Q Consensus 304 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-~I~~-l~~spdg~~l~-s~s~Dg~I~iwd~~ 365 (685)
+..++++|-.-..|-|||-..++.+..+.+... .|.+ ..|+|-+..++ .++..|.|+||--.
T Consensus 431 ~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 431 DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 999999999988999999999998888765443 4544 47999877444 44577888888644
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.1e-24 Score=220.36 Aligned_cols=233 Identities=17% Similarity=0.337 Sum_probs=209.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|...|.|+.....++ .+++|+.|-.+-+|.+.....+..+. +|..+|.++.|+++..+|++|+.+|+|++||+...
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA-- 102 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA-- 102 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhh--
Confidence 566777888777777 89999999999999998887777777 99999999999999999999999999999999977
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+.++.+.||...+.++.|+|-+.+.++++.|+.+++||++...+...+.
T Consensus 103 --k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~----------------------------- 151 (825)
T KOG0267|consen 103 --KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK----------------------------- 151 (825)
T ss_pred --hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-----------------------------
Confidence 8888999999999999999999999999999999999998666655543
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
+|...+.++.|+|+|++++.|++|..+++||...|+....|
T Consensus 152 ---------------------------------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef 192 (825)
T KOG0267|consen 152 ---------------------------------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF 192 (825)
T ss_pred ---------------------------------------CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc
Confidence 56777899999999999999999999999999999999888
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCC
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDL 315 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg 315 (685)
. .|.+.+..+.|+|..-.+++||.|+++++||+++...+...... ..|.+..|+|++..+++|....
T Consensus 193 ~--------~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 193 K--------SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred c--------cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 6 89999999999999999999999999999999988877766554 7899999999999999887654
No 146
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=6.6e-23 Score=205.02 Aligned_cols=275 Identities=16% Similarity=0.306 Sum_probs=220.2
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~ 83 (685)
.|..++|-|||..+++.+ +..+.+||.+.|.++.+++ +|.+.|+|++|+.||+.+++|+.|..|.+|.-... -
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE----G 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE----G 86 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEeccccc----c
Confidence 688999999999555544 3679999999999999999 99999999999999999999999999999964432 2
Q ss_pred eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
.++ ..|...|.|+.|+|-...|++++-. ..-+|+.......+.
T Consensus 87 ~Lk--YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~---------------------------------- 129 (1081)
T KOG1538|consen 87 ILK--YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH---------------------------------- 129 (1081)
T ss_pred eee--eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh----------------------------------
Confidence 233 3699999999999998899998754 356776543221100
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
.....+.+++|..||.+++.|-.+|+|.+-|-. |+....+.
T Consensus 130 ------------------------------------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~-- 170 (1081)
T KOG1538|consen 130 ------------------------------------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE-- 170 (1081)
T ss_pred ------------------------------------hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe--
Confidence 224568899999999999999999999998643 33333332
Q ss_pred cccccCCCCcCEEEEEEcCCC-----CEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEE
Q 005656 244 SERSNYAHNGEVVGVACDSTN-----TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 318 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~-----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~ 318 (685)
...+.+.+|.+++|+|.. ..+++..+..++.++.+.....-.....+-...|+.+.++|.++..|+.|+.+.
T Consensus 171 ---Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 171 ---RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLS 247 (1081)
T ss_pred ---CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceE
Confidence 122678899999999864 578888888999999887654444445556678999999999999999999999
Q ss_pred EEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 319 i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
+|. +.|-.+.++......|..++..|++++++.|+.||+|-.|++.
T Consensus 248 ~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 248 LFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 996 4566677777678899999999999999999999999999874
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.7e-24 Score=218.93 Aligned_cols=254 Identities=17% Similarity=0.345 Sum_probs=221.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCe
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 96 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~ 96 (685)
+++.+...-.+++||.... ..|...|.++..-..++.+++|+.|..+-+|.+... ..+..+.+|..+|.
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~-------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp----~~i~S~~~hespIe 74 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREF-------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP----NAITSLTGHESPIE 74 (825)
T ss_pred ccceeeeeeccccccchhh-------hhhhhhhceeeeeccceeeccCCCceeeccccccCC----chhheeeccCCcce
Confidence 4445555666788886432 278888999988778899999999999999977655 45556789999999
Q ss_pred EEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcC
Q 005656 97 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 176 (685)
Q Consensus 97 ~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (685)
++.|+++...|+.|+.+|+|++||++..+..+.+.
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt--------------------------------------------- 109 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT--------------------------------------------- 109 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhhhhhhhhhh---------------------------------------------
Confidence 99999999999999999999999998776554442
Q ss_pred CceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656 177 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 256 (685)
Q Consensus 177 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (685)
+|...+.++.|+|-+.|.+.|+.|+.+.+||++...+...+. +|...|.
T Consensus 110 -----------------------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~--------s~~~vv~ 158 (825)
T KOG0267|consen 110 -----------------------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK--------SHTRVVD 158 (825)
T ss_pred -----------------------ccccCcceeeeccceEEeccccccccceehhhhccCceeeec--------CCcceeE
Confidence 778889999999999999999999999999999777777665 7999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC
Q 005656 257 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT 335 (685)
Q Consensus 257 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~ 335 (685)
.+.|+|+|+++++++.|.++++||...|++...+. +.+.+..+.|+|..-+++.|+.|+++++||+++-+.+.......
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~ 238 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPET 238 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCcc
Confidence 99999999999999999999999999999999998 55899999999999999999999999999999999998888888
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC
Q 005656 336 DRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 336 ~~I~~l~~spdg~~l~s~s~Dg 357 (685)
..|.+.+|+|+++.+++|..+.
T Consensus 239 ~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 239 DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCceeeeecCCceeeecCchhh
Confidence 9999999999999988886553
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.4e-22 Score=194.70 Aligned_cols=286 Identities=15% Similarity=0.217 Sum_probs=220.7
Q ss_pred CCcEEEEeCCCCeeeEEeecccc--cCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEE
Q 005656 24 SGVISIWNLEKRRLQSVIREAHD--NAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 100 (685)
Q Consensus 24 dg~I~vwd~~~~~~~~~~~~~h~--~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~ 100 (685)
...+++||+..-.....+. .|+ -.+.++.|+.... .+++.+.|..|++|.-+...+....+....+. .-.|++.
T Consensus 11 gd~~kl~D~s~~~~~~~~~-~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~ 87 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYV-HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVAC 87 (673)
T ss_pred CCceEEeecccccCccccc-cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhh
Confidence 3569999998766554443 232 3489999988764 33344568899999655543333333333333 4455555
Q ss_pred ecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceE
Q 005656 101 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 180 (685)
Q Consensus 101 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (685)
.....|+++||..+.|+|||++...+.+.+
T Consensus 88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l-------------------------------------------------- 117 (673)
T KOG4378|consen 88 ASQSLYEISGGQSGCVKIWDLRAKLIHRFL-------------------------------------------------- 117 (673)
T ss_pred hhcceeeeccCcCceeeehhhHHHHHhhhc--------------------------------------------------
Confidence 555689999999999999999744332222
Q ss_pred EEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEE
Q 005656 181 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 260 (685)
Q Consensus 181 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 260 (685)
..|...|+++.++....|+++++..|.|.+..+.++.....|.. +....|+-+.+
T Consensus 118 ------------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~-------~sgqsvRll~y 172 (673)
T KOG4378|consen 118 ------------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI-------DSGQSVRLLRY 172 (673)
T ss_pred ------------------cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec-------CCCCeEEEeec
Confidence 27789999999999999999999999999999999988777632 33456778999
Q ss_pred cCCCCE-EEEEECCCeEEEEECCCCceEEEee--cCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCeeEEEEecCCC
Q 005656 261 DSTNTL-MISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRMVRKFEGHTD 336 (685)
Q Consensus 261 ~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 336 (685)
++..+. |.+++.+|.|.+||+....++..+. |..+...++|+|.+. +|++.+.|..|.+||+...+....+. -..
T Consensus 173 s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~ 251 (673)
T KOG4378|consen 173 SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSH 251 (673)
T ss_pred ccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecC
Confidence 998764 5678899999999999887766543 458899999999776 78889999999999999888777775 456
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeEEeeccc-eEEEEEcCCC
Q 005656 337 RITDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVS-ITALSLSPNM 388 (685)
Q Consensus 337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~-~~~i~~~~~~~~-v~~v~~spdg 388 (685)
+.+.++|+++|.+|+.|+..|.|..||++. ..++.++..|.. |++++|-|..
T Consensus 252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 789999999999999999999999999985 456777766555 9999997764
No 149
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.6e-23 Score=212.93 Aligned_cols=214 Identities=16% Similarity=0.297 Sum_probs=173.5
Q ss_pred CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCC
Q 005656 35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQD 113 (685)
Q Consensus 35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d 113 (685)
.+++..+. ||.+.|..+.||.++ +|+++|.|.|||+|++... .+++.+ .|..-|+||+|+| |.+|+++|+-|
T Consensus 359 ekP~~ef~-GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~----~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 359 EKPFCEFK-GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK----ECLKVF-SHNDFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred ccchhhhh-ccchhheecccccCC-eeEeccccccEEeecCCCc----ceeeEE-ecCCeeEEEEecccCCCcEeecccc
Confidence 35566777 999999999999865 9999999999999998876 677776 6999999999999 68999999999
Q ss_pred CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656 114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 193 (685)
Q Consensus 114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 193 (685)
|.||||++...+.. .|.
T Consensus 432 ~KvRiWsI~d~~Vv------------------------------------------------------~W~--------- 448 (712)
T KOG0283|consen 432 GKVRLWSISDKKVV------------------------------------------------------DWN--------- 448 (712)
T ss_pred cceEEeecCcCeeE------------------------------------------------------eeh---------
Confidence 99999999655432 221
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccccc-ccCCCCcCEEEEEEcCCC-CEEEEEE
Q 005656 194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER-SNYAHNGEVVGVACDSTN-TLMISAG 271 (685)
Q Consensus 194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~-~~l~s~s 271 (685)
....-|++++|+|+|++.++|+-+|.+++|+....+....+.-.... ....|. .|+++.|.|.. ..+++.+
T Consensus 449 ------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS 521 (712)
T KOG0283|consen 449 ------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS 521 (712)
T ss_pred ------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec
Confidence 33467999999999999999999999999999887765544211111 112344 89999999754 4577788
Q ss_pred CCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656 272 YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 325 (685)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~ 325 (685)
.|..|+|+|.++..++..+... ..-....|+.||++|+++++|..|+||+....
T Consensus 522 nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 522 NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 8999999999888888777653 44566788899999999999999999998643
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5e-21 Score=175.36 Aligned_cols=290 Identities=15% Similarity=0.198 Sum_probs=199.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC----CeeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK----RRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWI 74 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~----~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd 74 (685)
|++-|++++|.+.|+ .+||++.|++|+|||..+ -.+....+ .|.+.|..+.|.+ -|+.+|+++.|++++||.
T Consensus 12 h~DlihdVs~D~~GR-RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGR-RMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CcceeeeeeecccCc-eeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 677799999999999 999999999999999654 34566677 8999999999987 478999999999999996
Q ss_pred ecCC-----CCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656 75 FDTT-----DGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 147 (685)
Q Consensus 75 ~~~~-----~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (685)
=... +.......++......|+.+.|.|. |-.+++++.||++|||+....-........+- ...+.. ..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E---i~~~~~-pp 165 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE---IQNVID-PP 165 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh---hhhccC-Cc
Confidence 4211 1234455667778899999999996 88899999999999998765543333321110 000000 00
Q ss_pred ccccCceeeeecccccccCCcceEEEEcCC-----ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC----CEEE
Q 005656 148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDT-----AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG----NFAV 218 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~ 218 (685)
.....+..+++-+ ..+.....++.+.+. +.+.+|........-........++.+|+.++|.|+- ..++
T Consensus 166 ~~~~~~~~CvsWn--~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 166 GKNKQPCFCVSWN--PSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred ccccCcceEEeec--cccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 0111122222222 222233344444443 5778888776655555555666899999999999963 5789
Q ss_pred EEecCCcEEEEECCCCc------------cccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC---
Q 005656 219 LGTAGGWIERFNLQSGI------------SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--- 283 (685)
Q Consensus 219 ~g~~dg~i~~~d~~~~~------------~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~--- 283 (685)
+++.|| |++|++.... ....+.-........|++.|..+.|+-.|..|++.|.||.|++|...-
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~ 322 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNL 322 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhh
Confidence 999999 9999987421 111121112223458999999999999999999999999999997542
Q ss_pred CceEEEeecCCceeEE
Q 005656 284 RDLKSRWEVGCSLVKI 299 (685)
Q Consensus 284 ~~~~~~~~~~~~i~~~ 299 (685)
.++...+.....+...
T Consensus 323 ~kC~sv~~~e~~~~~~ 338 (361)
T KOG2445|consen 323 WKCTSVLKAEGSVTKP 338 (361)
T ss_pred heeeeEEeccCCCCCc
Confidence 2344444444333333
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2e-22 Score=193.42 Aligned_cols=234 Identities=23% Similarity=0.287 Sum_probs=182.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCee--------------------eEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEE
Q 005656 16 PLLASGASSGVISIWNLEKRRL--------------------QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWI 74 (685)
Q Consensus 16 ~~latg~~dg~I~vwd~~~~~~--------------------~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd 74 (685)
+++|.|+.|..|.|||+.=... ......+|++.|.+++|+.+- +.|||||.|.+|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 3999999999999999862110 000112799999999999864 4999999999999999
Q ss_pred ecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
++++ ++..++..|...|.++.|+|. ...|++|+.|+++.+.|.+......
T Consensus 273 ~~~g----~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~------------------------- 323 (463)
T KOG0270|consen 273 VDTG----KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG------------------------- 323 (463)
T ss_pred cCCC----CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC-------------------------
Confidence 9998 777788889999999999996 6789999999999999987421110
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECC
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQ 232 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~ 232 (685)
.-| ...+.|-.++|.|. .+.+++++.||.|+-+|++
T Consensus 324 ---------------------------~~w----------------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 324 ---------------------------KEW----------------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred ---------------------------ceE----------------EeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 111 23567888899884 4678889999999999998
Q ss_pred CC-ccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCC-
Q 005656 233 SG-ISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNG- 306 (685)
Q Consensus 233 ~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~- 306 (685)
+. +...+.. +|.++|.++++++.. .+++|++.|+.|++|++..........+. +...|+++.|+-.
T Consensus 361 ~~~~~vwt~~--------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~ 432 (463)
T KOG0270|consen 361 NPGKPVWTLK--------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAF 432 (463)
T ss_pred CCCCceeEEE--------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcce
Confidence 76 5555544 999999999998865 57889999999999999865443333322 4466777777765
Q ss_pred EEEEEeCCCeEEEEEcCCCeeEE
Q 005656 307 LLATVADDLVIRLFDVVALRMVR 329 (685)
Q Consensus 307 ~l~~~~~dg~I~i~d~~~~~~~~ 329 (685)
++|.|+..+.++|||+.+...++
T Consensus 433 ~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 433 TLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred EEEecCccceEEEeecccChhHH
Confidence 78888888999999998876554
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=7.1e-22 Score=191.50 Aligned_cols=270 Identities=16% Similarity=0.239 Sum_probs=212.1
Q ss_pred CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEE--eCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA--GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
..+++||+.........+..-..|. +.++.|..... |+++ +.|..+++|.-... ..++.
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg--~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~--~~~Vp-------------- 72 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPG--DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK--TPEVP-------------- 72 (673)
T ss_pred CceEEeecccccCccccccCCCCCc--ceeeeccccce-EEEeecCCceeEEEecccCC--CCccc--------------
Confidence 4799999988766655554433333 88889987653 4444 45777888853221 11110
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW 225 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 225 (685)
. +.. .......|++......|+++|+.+|.
T Consensus 73 --------~----------------------------------------~~k--~~gd~~~Cv~~~s~S~y~~sgG~~~~ 102 (673)
T KOG4378|consen 73 --------R----------------------------------------VRK--LTGDNAFCVACASQSLYEISGGQSGC 102 (673)
T ss_pred --------e----------------------------------------eec--cccchHHHHhhhhcceeeeccCcCce
Confidence 0 000 11123445555556689999999999
Q ss_pred EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--CceeEEEEee
Q 005656 226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHR 303 (685)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~ 303 (685)
|.+||++.....+.+. .|...|+++.++....+|++++..|.|.+..+.++.....+.++ ..+.-+.|+|
T Consensus 103 Vkiwdl~~kl~hr~lk--------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~ 174 (673)
T KOG4378|consen 103 VKIWDLRAKLIHRFLK--------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSP 174 (673)
T ss_pred eeehhhHHHHHhhhcc--------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccc
Confidence 9999999655555443 89999999999999999999999999999999999888887775 4566899999
Q ss_pred cCC-EEEEEeCCCeEEEEEcCCCeeEEEE-ecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEeeccceE
Q 005656 304 VNG-LLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSIT 380 (685)
Q Consensus 304 ~~~-~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~ 380 (685)
..+ +|.+++++|.|.+||+....++..+ ..|..+...|+|+|.. .+|++.+.|..|.+||+.+.+....+....+..
T Consensus 175 skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pls 254 (673)
T KOG4378|consen 175 SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLS 254 (673)
T ss_pred ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcc
Confidence 877 7778899999999999988776655 5799999999999955 578899999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEEeCCCeEEEEEcCCCcCCCCC
Q 005656 381 ALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 415 (685)
Q Consensus 381 ~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~~~~~ 415 (685)
+++|+++|-+|++|+..| .|+.||.|..-+|+..
T Consensus 255 tvaf~~~G~~L~aG~s~G-~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 255 TVAFSECGTYLCAGNSKG-ELIAYDMRSTKAPVAV 288 (673)
T ss_pred eeeecCCceEEEeecCCc-eEEEEecccCCCCceE
Confidence 999999999999999987 9999999988777653
No 153
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=2.3e-21 Score=178.60 Aligned_cols=285 Identities=18% Similarity=0.261 Sum_probs=213.7
Q ss_pred CeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC---------ceeEecccCCCCCeEEEEe-------cCCCEEEEEe
Q 005656 48 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP---------RLLRFRSGHSAPPLCIRFY-------ANGRHILSAG 111 (685)
Q Consensus 48 ~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---------~~~~~~~~h~~~v~~i~~~-------~~~~~l~s~s 111 (685)
-..++.|+|||..|++-+.|+.+++|++....... ............|...+|. |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34578999999999999999999999886432110 1111112234567777887 5678999999
Q ss_pred CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccC
Q 005656 112 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 191 (685)
Q Consensus 112 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 191 (685)
.+.-|++||.-+++....+..-...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~------------------------------------------------------- 155 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQ------------------------------------------------------- 155 (406)
T ss_pred ccCceeeeeccccccccchhhhhhH-------------------------------------------------------
Confidence 9999999999988765554311100
Q ss_pred ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC-CCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEE
Q 005656 192 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMIS 269 (685)
Q Consensus 192 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s 269 (685)
..-....+++|+|||.+|++|.. ..|++||+ +.|.....+..... ...+..+-+.+++|+|.. ..++.
T Consensus 156 --------de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~-~k~gq~giisc~a~sP~~~~~~a~ 225 (406)
T KOG2919|consen 156 --------DEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTK-GKFGQKGIISCFAFSPMDSKTLAV 225 (406)
T ss_pred --------HhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhc-ccccccceeeeeeccCCCCcceee
Confidence 11234678999999999999875 56999999 66655444322111 122457789999999976 48899
Q ss_pred EECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC-CeeEEEEecCCC-CeEE--EEE
Q 005656 270 AGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA-LRMVRKFEGHTD-RITD--FCF 343 (685)
Q Consensus 270 ~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~-~~~~~~~~~h~~-~I~~--l~~ 343 (685)
++...++-||.-..+.++..+.. .+.|+.+.|+++|+.|.+|.. |-.|-.||++. +.++..+..|.+ .=.. ...
T Consensus 226 gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl 305 (406)
T KOG2919|consen 226 GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL 305 (406)
T ss_pred ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence 99999999999888888877665 489999999999999999876 67899999985 466777777765 2223 345
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCC-CceeeEEeeccc-eEEEEEcCCCCeEEEEEeC
Q 005656 344 SEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVS-ITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 344 spdg~~l~s~s~Dg~I~iwd~~~-~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d 397 (685)
.|+|++|++|+.||.|++||+.+ |..+..+..++. |+.|+++|--.++||++..
T Consensus 306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 78999999999999999999998 776666655554 9999999999999988633
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.8e-22 Score=211.48 Aligned_cols=285 Identities=18% Similarity=0.307 Sum_probs=222.4
Q ss_pred EEEEEccCCCCEEEEEe----------CCCcEEEEeCCC--C----eeeEEeecccccCeeEEEEeCCCcE----EEEec
Q 005656 6 TALAFSSDGQPLLASGA----------SSGVISIWNLEK--R----RLQSVIREAHDNAIISLHFFANEPV----LMSAS 65 (685)
Q Consensus 6 ~~l~fspdg~~~latg~----------~dg~I~vwd~~~--~----~~~~~~~~~h~~~V~~l~~sp~~~~----l~s~s 65 (685)
..++|+|++..++|+|. .+.++.||.+.- . +....+. -....+.++|.+.+.. ||.|.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeeccc
Confidence 35789999977888763 355667775542 2 2333332 4557889999997764 88889
Q ss_pred CCCcEEEEEecC--CCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656 66 ADNSIKMWIFDT--TDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 142 (685)
Q Consensus 66 ~D~~v~iWd~~~--~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 142 (685)
.||.|.+|+... .+.....+.....|.++|..+.|++. ++.|++|+.||.|.|||+...+......
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~----------- 156 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG----------- 156 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----------
Confidence 999999999877 34555677888899999999999997 4599999999999999986432211110
Q ss_pred cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 005656 143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 222 (685)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 222 (685)
T Consensus 157 -------------------------------------------------------------------------------- 156 (1049)
T KOG0307|consen 157 -------------------------------------------------------------------------------- 156 (1049)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC---CceeE
Q 005656 223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVK 298 (685)
Q Consensus 223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~ 298 (685)
.....+.|.+++|+..- ..|++++.+|.+.|||++..+.+..+... ..+..
T Consensus 157 -------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 157 -------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred -------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence 00345678888887653 56788889999999999988777666554 34789
Q ss_pred EEEeecCC-EEEEEeCCC---eEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeE
Q 005656 299 IVYHRVNG-LLATVADDL---VIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDA 372 (685)
Q Consensus 299 ~~~~~~~~-~l~~~~~dg---~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~ 372 (685)
+.|+|++. .++++++|. .|.+||++.. .+++.+++|...|.++.|++.+ ++|+|++.|+.|.+|+..+|+.+..
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 99999976 566666543 7999998864 6788889999999999999955 8999999999999999999999999
Q ss_pred Eeeccc-eEEEEEcCCCC-eEEEEEeCCCeEEEEEcCCC
Q 005656 373 IHVDVS-ITALSLSPNMD-VLATAHVDQNGVYLWVNRCM 409 (685)
Q Consensus 373 ~~~~~~-v~~v~~spdg~-~Lat~~~d~~~I~lW~~~~~ 409 (685)
+...+. +..+.|+|... .+++++-|| .|.|++....
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~~A~asfdg-kI~I~sl~~~ 329 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSVMAAASFDG-KISIYSLQGT 329 (1049)
T ss_pred cCCCCcceeeeeecCCCcchhhhheecc-ceeeeeeecC
Confidence 987555 99999999876 788888887 9999986543
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=4.9e-21 Score=181.94 Aligned_cols=297 Identities=16% Similarity=0.225 Sum_probs=213.0
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---------eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---------LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 73 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~---------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW 73 (685)
.+|.++.|.+++...+|||+.|..|++|-+..+. ....+. .|...|+++.|+|+|.+|+||+.+|.|.+|
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 5789999999876689999999999999876422 244454 899999999999999999999999999999
Q ss_pred EecC------C------CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhh
Q 005656 74 IFDT------T------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 141 (685)
Q Consensus 74 d~~~------~------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 141 (685)
.... . ...+...+.+.+|...|..++|+|++.++++++.|..+++||+..+.....+.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~---------- 162 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD---------- 162 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc----------
Confidence 7651 0 12245567788999999999999999999999999999999999887665553
Q ss_pred ccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 005656 142 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 221 (685)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 221 (685)
.|...+..++|.|.++++++-+
T Consensus 163 ----------------------------------------------------------dh~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 163 ----------------------------------------------------------DHEHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred ----------------------------------------------------------ccccccceeecchhhhhhhhhc
Confidence 6677788888888888888888
Q ss_pred cCCcEEEEECCCCcccccccc--cccccc---------CCCC----cCEEEEEEcCCCCEEEEEE----CCCeE-----E
Q 005656 222 AGGWIERFNLQSGISRGSYLD--MSERSN---------YAHN----GEVVGVACDSTNTLMISAG----YHGDI-----K 277 (685)
Q Consensus 222 ~dg~i~~~d~~~~~~~~~~~~--~~~~~~---------~~h~----~~v~~l~~~~~~~~l~s~s----~dg~i-----~ 277 (685)
.|...+.+.+........... ...... .-|. .-...++|+|+|..+++.+ .++.+ +
T Consensus 185 ~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tY 264 (434)
T KOG1009|consen 185 SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSY 264 (434)
T ss_pred cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeE
Confidence 887777766654433322210 000000 0121 1245578899999888753 12222 3
Q ss_pred EEECCC-CceEEEeecC-CceeEEEEee------------------cCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCC
Q 005656 278 VWDFKG-RDLKSRWEVG-CSLVKIVYHR------------------VNGLLATVADDLVIRLFDVVALRMVRKFE-GHTD 336 (685)
Q Consensus 278 iwd~~~-~~~~~~~~~~-~~i~~~~~~~------------------~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~ 336 (685)
+++-.. .++...+... .+...+.++| -+-.+|+++. ..|+|||.++..++.... -|-.
T Consensus 265 vfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~ 343 (434)
T KOG1009|consen 265 VFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYS 343 (434)
T ss_pred eeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeee
Confidence 443321 1222222222 3334444443 2234555554 589999999988877665 4888
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 005656 337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 369 (685)
Q Consensus 337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~ 369 (685)
.|++++|++||..|+..|.||...+-.+...++
T Consensus 344 ~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 344 AITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 999999999999999999999888777766554
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=7.1e-19 Score=187.40 Aligned_cols=327 Identities=24% Similarity=0.476 Sum_probs=252.8
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-eeEEeecccccCeeEEEE-eCCCc-EEEEecC-CCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHF-FANEP-VLMSASA-DNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~-sp~~~-~l~s~s~-D~~v~iWd~~ 76 (685)
|...|.++.|.+.+. .++.++.|+.+.+|+...+. ....+...+...+..+.+ ++++. .++..+. |+.+.+|++.
T Consensus 64 ~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 64 HEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred ccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 567899999999998 88888899999999999887 666666223347888888 78887 5555444 9999999988
Q ss_pred C-CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 77 T-TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 77 ~-~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
. . ........|...|..+.|+|++.++++++. |+.+++|++........+.
T Consensus 143 ~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 195 (466)
T COG2319 143 TPG----KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA----------------------- 195 (466)
T ss_pred CCC----eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-----------------------
Confidence 6 3 566777899999999999999998888886 9999999997644333331
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE-EEEecCCcEEEEECCC
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQS 233 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~ 233 (685)
.+...+.+++++|++..+ +.++.++.|.+||...
T Consensus 196 ---------------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~ 230 (466)
T COG2319 196 ---------------------------------------------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230 (466)
T ss_pred ---------------------------------------------cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence 467889999999999844 4449999999998886
Q ss_pred Ccccc-ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce-EEEe-ecCCceeEEEEeecCCEEEE
Q 005656 234 GISRG-SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL-KSRW-EVGCSLVKIVYHRVNGLLAT 310 (685)
Q Consensus 234 ~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-~~~~~i~~~~~~~~~~~l~~ 310 (685)
+.... .+. .|...+ ...|++++..+++++.|+.+++|+...... ...+ .+...+.++.|+|++..+++
T Consensus 231 ~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 231 GKLLRSTLS--------GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CcEEeeecC--------CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 66655 232 677665 448999998889999999999999986654 3333 34588999999998888888
Q ss_pred EeCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCceeeEEeeccceEEEEEcCC
Q 005656 311 VADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHVDVSITALSLSPN 387 (685)
Q Consensus 311 ~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~spdg~~l~s~-s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spd 387 (685)
++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+++|++..............+..+.+++
T Consensus 302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 380 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP- 380 (466)
T ss_pred eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-
Confidence 9889999999999887777766 888889999994343566655 688999999999887333333444489999999
Q ss_pred CCeEEE-EEeCCCeEEEEEcCCCcC
Q 005656 388 MDVLAT-AHVDQNGVYLWVNRCMFS 411 (685)
Q Consensus 388 g~~Lat-~~~d~~~I~lW~~~~~~~ 411 (685)
...... +..++ .+.+|+......
T Consensus 381 ~~~~~~~~~~~~-~~~~~~~~~~~~ 404 (466)
T COG2319 381 DGRVVSSGSTDG-TVRLWDLSTGSL 404 (466)
T ss_pred CCCEEEEecCCC-ceEEEecccCee
Confidence 644444 35554 999998665443
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2.5e-21 Score=193.53 Aligned_cols=297 Identities=15% Similarity=0.224 Sum_probs=207.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEE--eecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV--IREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDT 77 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~--~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~ 77 (685)
|.+.|..+.|-| |+..|++++.|.+|++||+++.++... +. ||.+.|.+++|.|..+ .+++|+.||.|.|||+..
T Consensus 99 H~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 99 HKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred ccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeec-ccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 788999999999 766999999999999999999998776 66 9999999999999665 889999999999999854
Q ss_pred CCC-----------------------CCceeEecccCCCCCeE---EEEecCCCEEEEEeC-CCceEEEEeecCceeeEe
Q 005656 78 TDG-----------------------DPRLLRFRSGHSAPPLC---IRFYANGRHILSAGQ-DRAFRLFSVIQDQQSREL 130 (685)
Q Consensus 78 ~~~-----------------------~~~~~~~~~~h~~~v~~---i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~ 130 (685)
... ..+..+....|...|.+ +.+..|...|+++|. |+.|+|||++........
T Consensus 177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc
Confidence 320 00112223345556666 667778889999988 999999999887654433
Q ss_pred chhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE
Q 005656 131 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI 210 (685)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (685)
..... ............+.++..
T Consensus 257 ep~~~---------------------------------------------------------~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 257 EPRGS---------------------------------------------------------DKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred CCCcc---------------------------------------------------------cCccCcccceeeeEEEEe
Confidence 21000 000000022345788888
Q ss_pred ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc--CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE-
Q 005656 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK- 287 (685)
Q Consensus 211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~- 287 (685)
...|.++++.+.|+.|+.||+.+........ ..++.. .-..-..+|++.++++|+.|...++|.+.+.+.-
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~------~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLSISPVAE------FSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccCcCchhh------ccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 9999999999999999999998765443321 002211 1112245899999999999999999999875432
Q ss_pred -EEeecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC--------------eeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656 288 -SRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL--------------RMVRKFEGHTDRITDFCFSEDGKWLL 351 (685)
Q Consensus 288 -~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~--------------~~~~~~~~h~~~I~~l~~spdg~~l~ 351 (685)
....+...+++++|.|... -++++++|..++||++..+ ...+.|++|.-.+..+.++-.+.+..
T Consensus 354 ~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~ 433 (720)
T KOG0321|consen 354 ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKD 433 (720)
T ss_pred hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccc
Confidence 2223346789999988654 5677799999999998654 22345566666666665554433322
Q ss_pred EEeCCCcEEEEEc
Q 005656 352 SSGMDGSLRIWDV 364 (685)
Q Consensus 352 s~s~Dg~I~iwd~ 364 (685)
.. .+..++|..
T Consensus 434 pR--~~~~r~~ss 444 (720)
T KOG0321|consen 434 PR--EGMNRISSS 444 (720)
T ss_pred hh--hhccccccC
Confidence 22 344555543
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=8.1e-21 Score=175.01 Aligned_cols=276 Identities=16% Similarity=0.204 Sum_probs=206.2
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCCC------------eeeEEeecccccCeeEEEEe-------CCCcEEEEecC
Q 005656 6 TALAFSSDGQPLLASGASSGVISIWNLEKR------------RLQSVIREAHDNAIISLHFF-------ANEPVLMSASA 66 (685)
Q Consensus 6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~------------~~~~~~~~~h~~~V~~l~~s-------p~~~~l~s~s~ 66 (685)
..+.|||||. .|.+-+.|..+.+|++... +....++......|...+|- |+..++++.+.
T Consensus 53 kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 53 KGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred ccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 3578999999 8888889999999997531 11223332345678888886 56779999999
Q ss_pred CCcEEEEEecCCCCCCceeEecc--cCCC---CCeEEEEecCCCEEEEEeCCCceEEEEee-cCceeeEechhhHHHHHh
Q 005656 67 DNSIKMWIFDTTDGDPRLLRFRS--GHSA---PPLCIRFYANGRHILSAGQDRAFRLFSVI-QDQQSRELSQRHVAKRAR 140 (685)
Q Consensus 67 D~~v~iWd~~~~~~~~~~~~~~~--~h~~---~v~~i~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~ 140 (685)
|.-|++||.-++. +..... .|.. ...+++|+|||.+|+.| ..+.|++||+. .+.........
T Consensus 132 ~~PIh~wdaftG~----lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~------- 199 (406)
T KOG2919|consen 132 DQPIHLWDAFTGK----LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV------- 199 (406)
T ss_pred cCceeeeeccccc----cccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh-------
Confidence 9999999988773 222222 2333 44689999999998765 57789999993 33322211100
Q ss_pred hccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEE
Q 005656 141 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVL 219 (685)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~ 219 (685)
.....+..+.+.+++++|-. ..+++
T Consensus 200 ------------------------------------------------------~~~k~gq~giisc~a~sP~~~~~~a~ 225 (406)
T KOG2919|consen 200 ------------------------------------------------------TKGKFGQKGIISCFAFSPMDSKTLAV 225 (406)
T ss_pred ------------------------------------------------------hcccccccceeeeeeccCCCCcceee
Confidence 00011446778999999954 58999
Q ss_pred EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CceEEEeecC----
Q 005656 220 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG-RDLKSRWEVG---- 293 (685)
Q Consensus 220 g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~~~~~~~---- 293 (685)
|+...++-+|+-..+.....+. +|.+.|+.+.|.++|+.|++|+ .|..|..||++. +.++..+..+
T Consensus 226 gsY~q~~giy~~~~~~pl~llg--------gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T 297 (406)
T KOG2919|consen 226 GSYGQRVGIYNDDGRRPLQLLG--------GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT 297 (406)
T ss_pred ecccceeeeEecCCCCceeeec--------ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCc
Confidence 9999999999988887776654 9999999999999999999998 578899999985 3444444332
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656 294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356 (685)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D 356 (685)
..-.-+...|++++|++|+.||.|++||+++ +..+..+..|...++.++++|--.++++++..
T Consensus 298 NQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 298 NQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 1223355568899999999999999999998 77788888899999999999998888888754
No 159
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.8e-21 Score=198.79 Aligned_cols=201 Identities=19% Similarity=0.337 Sum_probs=166.1
Q ss_pred EEEEEcc-CCCEEEEEecCCcEEEEECCC---CccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEE
Q 005656 206 KACTISA-CGNFAVLGTAGGWIERFNLQS---GISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWD 280 (685)
Q Consensus 206 ~~~~~s~-~g~~l~~g~~dg~i~~~d~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd 280 (685)
..+.|+. +.+++++++.+|.|.+||+.. ......|. .|...+.++.|++.. .+|++||.||+|++||
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~--------EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN--------EHERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh--------hhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 3445553 568999999999999999987 33333333 899999999999864 6889999999999999
Q ss_pred CCCCceEEEeecC-CceeEEEEeec-CCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656 281 FKGRDLKSRWEVG-CSLVKIVYHRV-NGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 281 ~~~~~~~~~~~~~-~~i~~~~~~~~-~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg 357 (685)
++..+-..++... ..|..+.|+|. +..++++.+.|.+.+||++.. ++...+.+|.++|.++.|+|++.||||||.|+
T Consensus 163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc
Confidence 9988777766654 78999999996 458999999999999999865 67788899999999999999999999999999
Q ss_pred cEEEEEcCCCc--eeeEEeeccceEEEEEcCCCCeEE-EEE-eCCCeEEEEEcCCCcCCCC
Q 005656 358 SLRIWDVILAR--QIDAIHVDVSITALSLSPNMDVLA-TAH-VDQNGVYLWVNRCMFSGDS 414 (685)
Q Consensus 358 ~I~iwd~~~~~--~i~~~~~~~~v~~v~~spdg~~La-t~~-~d~~~I~lW~~~~~~~~~~ 414 (685)
.|+|||+.+++ .+.++..-.+|.+|.|-|+..+.+ +++ .++-.|+||+.+..|-|..
T Consensus 243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~ 303 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA 303 (839)
T ss_pred cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccce
Confidence 99999998654 456677778899999999887644 433 2234899999999997754
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.3e-20 Score=178.32 Aligned_cols=240 Identities=16% Similarity=0.316 Sum_probs=178.9
Q ss_pred eeEEEEeC-------CCcEEEEecCCCcEEEEEecCCCCCCceeE-----------------ecccCCCCCeEEEEecC-
Q 005656 49 IISLHFFA-------NEPVLMSASADNSIKMWIFDTTDGDPRLLR-----------------FRSGHSAPPLCIRFYAN- 103 (685)
Q Consensus 49 V~~l~~sp-------~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-----------------~~~~h~~~v~~i~~~~~- 103 (685)
-.|++|.. -|+++|.|+.|..|.|||++-.+....++. .-.+|+..|.++.|+.+
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35667654 256999999999999999976543211111 12367888888888765
Q ss_pred CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 183 (685)
Q Consensus 104 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 183 (685)
.+.|+|||.|.+|++||+.++++...+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~----------------------------------------------------- 282 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSI----------------------------------------------------- 282 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceeh-----------------------------------------------------
Confidence 456778888888888887766543332
Q ss_pred EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC
Q 005656 184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 263 (685)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 263 (685)
. .|.+.|.++.|+|.
T Consensus 283 ---------------------------------------------------------~--------~~~k~Vq~l~wh~~ 297 (463)
T KOG0270|consen 283 ---------------------------------------------------------T--------HHGKKVQTLEWHPY 297 (463)
T ss_pred ---------------------------------------------------------h--------hcCCceeEEEecCC
Confidence 1 67888999999886
Q ss_pred -CCEEEEEECCCeEEEEECCC-CceEEEeecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeE
Q 005656 264 -NTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL-RMVRKFEGHTDRIT 339 (685)
Q Consensus 264 -~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~ 339 (685)
..++++|+.|++|.+.|.+. ...-..+...+.|..++|.|... .++++..||+++-+|++.. +++.++..|.+.|.
T Consensus 298 ~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 298 EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 47899999999999999983 34445666778999999999876 7778889999999999875 99999999999999
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEee--cc-ceEEEEEcCCCCe-EEEEEeCCCeEEEEEcC
Q 005656 340 DFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHV--DV-SITALSLSPNMDV-LATAHVDQNGVYLWVNR 407 (685)
Q Consensus 340 ~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~--~~-~v~~v~~spdg~~-Lat~~~d~~~I~lW~~~ 407 (685)
++++++.- .++++++.|+.|++|++.....-....+ .- ...|+++.|+-.+ ||.|+..+ .++||+..
T Consensus 378 gl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~-~~~vwd~~ 449 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA-VLRVWDIF 449 (463)
T ss_pred eEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccc-eEEEeecc
Confidence 99998854 4788999999999999875443222211 11 1667788887654 55555554 89999854
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=2.2e-20 Score=175.71 Aligned_cols=199 Identities=18% Similarity=0.247 Sum_probs=157.6
Q ss_pred CCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEE
Q 005656 200 ENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIK 277 (685)
Q Consensus 200 ~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~ 277 (685)
+|...-..++|||-. ..+++|..-+.|++|...+|.....-. ...+|+..|-.++|+|.. ..|++||.||+|+
T Consensus 209 ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~-----Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIr 283 (440)
T KOG0302|consen 209 GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR-----PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIR 283 (440)
T ss_pred ccCccceeeecccccccccccCccccceEeeeeccCceeecCc-----cccccccchhhhccCCccCceEEeeecCceEE
Confidence 667778899999933 347788888899999998876543221 334899999999999975 6889999999999
Q ss_pred EEECCCC---ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC---CeeEEEEecCCCCeEEEEEcCC-CCEE
Q 005656 278 VWDFKGR---DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---LRMVRKFEGHTDRITDFCFSED-GKWL 350 (685)
Q Consensus 278 iwd~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~---~~~~~~~~~h~~~I~~l~~spd-g~~l 350 (685)
|||++.+ ..+.+-.+.+.|+.+.|+.+-.+||+|++||+++|||+++ ++++..|+-|..+|+++.|+|. ...|
T Consensus 284 IWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 284 IWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred EEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceE
Confidence 9999987 4555566778999999999888999999999999999975 5789999999999999999994 4578
Q ss_pred EEEeCCCcEEEEEcCCCc-------------------eeeEEeeccceEEEEEcCCC-CeEEEEEeCCCeEEEEE
Q 005656 351 LSSGMDGSLRIWDVILAR-------------------QIDAIHVDVSITALSLSPNM-DVLATAHVDQNGVYLWV 405 (685)
Q Consensus 351 ~s~s~Dg~I~iwd~~~~~-------------------~i~~~~~~~~v~~v~~spdg-~~Lat~~~d~~~I~lW~ 405 (685)
++++.|.+|.+||+..-. ++..-.+...+..+.|++.- .+|++++.| ++.||.
T Consensus 364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d--GfnVfk 436 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID--GFNVFK 436 (440)
T ss_pred EeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc--ceeEEE
Confidence 888899999999985321 11111233448899999975 466777667 466663
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=177.25 Aligned_cols=244 Identities=18% Similarity=0.322 Sum_probs=185.1
Q ss_pred CCCcEEEEEEccCCC-CEEEEEeCCCcEEEEeCCC----------------CeeeEEeecccccCeeEEEEeCCCc-EEE
Q 005656 1 MRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEK----------------RRLQSVIREAHDNAIISLHFFANEP-VLM 62 (685)
Q Consensus 1 h~~~V~~l~fspdg~-~~latg~~dg~I~vwd~~~----------------~~~~~~~~~~h~~~V~~l~~sp~~~-~l~ 62 (685)
|.|.|+.+.-++-|+ .+.|+=+..|.|.|||+.. .+.+.++. +|.+.=+.++|||-.. .|+
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccccccccc
Confidence 677888888887764 3666667899999999752 34566666 8999999999999432 688
Q ss_pred EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhh
Q 005656 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 141 (685)
Q Consensus 63 s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 141 (685)
||..-+.|++|...++.-... ...+.+|...|-.++|+|. ...|+|||.||+|+|||++.+.....+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd-~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~----------- 296 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVD-QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV----------- 296 (440)
T ss_pred cCccccceEeeeeccCceeec-CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-----------
Confidence 888888999998877543222 2334579999999999996 568899999999999999766321111
Q ss_pred ccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 005656 142 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 221 (685)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 221 (685)
T Consensus 297 -------------------------------------------------------------------------------- 296 (440)
T KOG0302|consen 297 -------------------------------------------------------------------------------- 296 (440)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC---CceEEEeecC-Ccee
Q 005656 222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG---RDLKSRWEVG-CSLV 297 (685)
Q Consensus 222 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~-~~i~ 297 (685)
...+|.+.|+.|.|+..-.+|++|+.||+++|||++. ++++..+..+ .+|+
T Consensus 297 -------------------------~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 297 -------------------------STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT 351 (440)
T ss_pred -------------------------EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence 0018999999999998888999999999999999984 5667777765 9999
Q ss_pred EEEEeecCC-EEEEEeCCCeEEEEEcCCCee----------------EEEEecCC--CCeEEEEEcCCC-CEEEEEeCCC
Q 005656 298 KIVYHRVNG-LLATVADDLVIRLFDVVALRM----------------VRKFEGHT--DRITDFCFSEDG-KWLLSSGMDG 357 (685)
Q Consensus 298 ~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~----------------~~~~~~h~--~~I~~l~~spdg-~~l~s~s~Dg 357 (685)
++.|+|... .+++++.|..|.|||+..-.- .+-+--|. ..|..+.|++.- .+|++.+.||
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 999999754 888999999999999853110 11122243 358889999854 4888888898
Q ss_pred cEEEEE
Q 005656 358 SLRIWD 363 (685)
Q Consensus 358 ~I~iwd 363 (685)
+.||-
T Consensus 432 -fnVfk 436 (440)
T KOG0302|consen 432 -FNVFK 436 (440)
T ss_pred -eeEEE
Confidence 66664
No 163
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=1.9e-21 Score=174.38 Aligned_cols=299 Identities=19% Similarity=0.285 Sum_probs=211.2
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.+.|+|+.|..+++ |.+|...|.|.+|++.+.+....++..|...|+.+.-.|+ ..|.+-+.|+.+.+|++...
T Consensus 13 ~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s-- 87 (323)
T KOG0322|consen 13 HSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS-- 87 (323)
T ss_pred ccchheehhhccchh--hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc--
Confidence 678899999999876 7899999999999999999888887678889999999997 57888899999999998764
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCC-ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR-AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 159 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (685)
..+ .-|+-.++++.|.+.. +...+... .+-.++-+......... ..
T Consensus 88 --~~i---~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D-----------------~g--------- 134 (323)
T KOG0322|consen 88 --AFI---SIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQD-----------------GG--------- 134 (323)
T ss_pred --ceE---EEeeeeccccccccce--eccCCCcchhheecCCcccchhhhhc-----------------cC---------
Confidence 222 2355667777776531 22222111 11111110000000000 00
Q ss_pred ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc-cCCC--EEEEEecCCcEEEEECCCCcc
Q 005656 160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGN--FAVLGTAGGWIERFNLQSGIS 236 (685)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~--~l~~g~~dg~i~~~d~~~~~~ 236 (685)
+...+.+-+ .+.....+.+.|..+. .++. ++++|+.+|.+.+||+.++..
T Consensus 135 ----------------~~tqv~i~d-----------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~ 187 (323)
T KOG0322|consen 135 ----------------DTTQVQIAD-----------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK 187 (323)
T ss_pred ----------------ccceeEccC-----------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce
Confidence 000000000 0001234455555533 2443 468899999999999999865
Q ss_pred cccccccc--ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC--ceE--EEeec-CCceeEEEEeecCCEEE
Q 005656 237 RGSYLDMS--ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR--DLK--SRWEV-GCSLVKIVYHRVNGLLA 309 (685)
Q Consensus 237 ~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~--~~~~~-~~~i~~~~~~~~~~~l~ 309 (685)
...++... ......|..+|.++.+.+.-..=++|+.+..+..|++... .+. ..+.. +..+..+.+-||++.+|
T Consensus 188 ~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlA 267 (323)
T KOG0322|consen 188 IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILA 267 (323)
T ss_pred eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEe
Confidence 55544322 1223379999999999987767788888889999988743 221 12222 35788899999999999
Q ss_pred EEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 310 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
+++.|+.||||..++.+++..++-|.+.|++++|+||...+|++|.|++|.+|++
T Consensus 268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999999999999999999999986
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=3.1e-18 Score=182.50 Aligned_cols=320 Identities=27% Similarity=0.484 Sum_probs=248.8
Q ss_pred cEEEEEE-ccCCCCEEEE-EeCCCcEEEEeCCC-CeeeEEeecccccCeeEEEEeCCCcEEEEecC-CCcEEEEEecCCC
Q 005656 4 AVTALAF-SSDGQPLLAS-GASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTD 79 (685)
Q Consensus 4 ~V~~l~f-spdg~~~lat-g~~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~~v~iWd~~~~~ 79 (685)
.+..+.+ ++++..+++. +..|+.+.+|+... ......+. .|...|..++|+|++..+++++. |+.+++|+....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 188 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG- 188 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-
Confidence 4666677 7777634444 34499999999998 77777777 89999999999999999998886 999999998874
Q ss_pred CCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeE-echhhHHHHHhhccccccccccCceeee
Q 005656 80 GDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRE-LSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
..+..+.+|...|.+++|+|++. .+++++.|+.+++||...+..... +.
T Consensus 189 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-------------------------- 239 (466)
T COG2319 189 ---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-------------------------- 239 (466)
T ss_pred ---ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC--------------------------
Confidence 66777778999999999999987 555559999999997764333221 11
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc-
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS- 236 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~- 236 (685)
.+.... ...|++++.++++++.++.+++|++.....
T Consensus 240 ------------------------------------------~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 276 (466)
T COG2319 240 ------------------------------------------GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276 (466)
T ss_pred ------------------------------------------CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE
Confidence 333333 228999998999999999999999987765
Q ss_pred ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee--cC-CceeEEEEeecCCEEEEE-e
Q 005656 237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--VG-CSLVKIVYHRVNGLLATV-A 312 (685)
Q Consensus 237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~-~~i~~~~~~~~~~~l~~~-~ 312 (685)
...+ ..|...+.++.|+|++..+++++.|+.+.+||..+........ .+ ..+..+.+.+++..++.+ .
T Consensus 277 ~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (466)
T COG2319 277 LRTL--------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348 (466)
T ss_pred EEEE--------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeec
Confidence 2222 2789999999999988888889889999999998887666554 33 458888883332555555 6
Q ss_pred CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCceeeEEeec-cceEEEEEcCCCCe
Q 005656 313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS-SGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDV 390 (685)
Q Consensus 313 ~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s-~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg~~ 390 (685)
.|+.+.+|++...........+. .+..+.+++ ...++. +..++.+.+|+............. ..+....+++++..
T Consensus 349 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (466)
T COG2319 349 DDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426 (466)
T ss_pred CCCcEEeeecCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcE
Confidence 78999999999887333333232 288999998 544444 688999999999998888877776 78999999999999
Q ss_pred EEEEEeCCCeEEEEEcCC
Q 005656 391 LATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 391 Lat~~~d~~~I~lW~~~~ 408 (685)
++.++.+. .+++|+...
T Consensus 427 ~~~~~~~~-~~~~~~~~~ 443 (466)
T COG2319 427 LASGSSDN-TIRLWDLKT 443 (466)
T ss_pred EEEecCCC-cEEEEeccC
Confidence 99977675 999998655
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=2.5e-20 Score=177.16 Aligned_cols=293 Identities=17% Similarity=0.209 Sum_probs=212.1
Q ss_pred cccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCC-----CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEE
Q 005656 45 HDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDG-----DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 118 (685)
Q Consensus 45 h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~-----~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~v 118 (685)
...+|.++.|.+++. .|+||+.|..|++|.+..... ....+..+..|...|+++.|+|+|..|+||+.+|.+.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346899999999877 999999999999999876543 23456778899999999999999999999999999999
Q ss_pred EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656 119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 198 (685)
Q Consensus 119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 198 (685)
|....-... .... ........ | ...+..
T Consensus 92 Wk~~~~~~~---~~d~------------------------e~~~~ke~----------------w---------~v~k~l 119 (434)
T KOG1009|consen 92 WKQGDVRIF---DADT------------------------EADLNKEK----------------W---------VVKKVL 119 (434)
T ss_pred EEecCcCCc---cccc------------------------hhhhCccc----------------e---------EEEEEe
Confidence 976431100 0000 00000000 0 111222
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656 199 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 278 (685)
Q Consensus 199 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 278 (685)
.+|...+..++|+|+++++++|+.|..+++||+..|.....+. .|...|..++|+|.++++++-+.|...+.
T Consensus 120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~--------dh~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD--------DHEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc--------ccccccceeecchhhhhhhhhccCcccce
Confidence 3688899999999999999999999999999999999887765 89999999999999999999999987777
Q ss_pred EECCCCceEEEee--------------------c----CCceeEEEEeecCCEEEEEeC----CC-----eEEEEEcCC-
Q 005656 279 WDFKGRDLKSRWE--------------------V----GCSLVKIVYHRVNGLLATVAD----DL-----VIRLFDVVA- 324 (685)
Q Consensus 279 wd~~~~~~~~~~~--------------------~----~~~i~~~~~~~~~~~l~~~~~----dg-----~I~i~d~~~- 324 (685)
+.+...+...... + ..-...++|+|+|.++++... ++ ..++|+-..
T Consensus 192 ~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l 271 (434)
T KOG1009|consen 192 FSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL 271 (434)
T ss_pred eeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc
Confidence 7766543332221 0 022456789999999887643 22 234554332
Q ss_pred CeeEEEEecCCCCeEEEEEcC------------------CCCEEEEEeCCCcEEEEEcCCCceeeEEe--eccceEEEEE
Q 005656 325 LRMVRKFEGHTDRITDFCFSE------------------DGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSL 384 (685)
Q Consensus 325 ~~~~~~~~~h~~~I~~l~~sp------------------dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~--~~~~v~~v~~ 384 (685)
.++...+.+...+...+.|+| -+-.+|.++. ..|+|||..+..++.... +-.+++.++|
T Consensus 272 ~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaw 350 (434)
T KOG1009|consen 272 KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAW 350 (434)
T ss_pred cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceee
Confidence 234445555555555666655 1223445554 579999999888877664 3345999999
Q ss_pred cCCCCeEEEEEeCC
Q 005656 385 SPNMDVLATAHVDQ 398 (685)
Q Consensus 385 spdg~~Lat~~~d~ 398 (685)
++||.+|+.++.||
T Consensus 351 s~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 351 SDDGSVLLVSSTDG 364 (434)
T ss_pred cCCCcEEEEeccCC
Confidence 99999999999998
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3.6e-20 Score=171.24 Aligned_cols=293 Identities=16% Similarity=0.225 Sum_probs=220.4
Q ss_pred CCCcEEEEEEcc----CCCCEEEEEeCCCcEEEEeCCCC---eeeEEeec-ccccCeeEEEEeCC----CcEEEEecCCC
Q 005656 1 MRGAVTALAFSS----DGQPLLASGASSGVISIWNLEKR---RLQSVIRE-AHDNAIISLHFFAN----EPVLMSASADN 68 (685)
Q Consensus 1 h~~~V~~l~fsp----dg~~~latg~~dg~I~vwd~~~~---~~~~~~~~-~h~~~V~~l~~sp~----~~~l~s~s~D~ 68 (685)
|+.+|..++|.+ +....+||.+. ..+.+|..... +.++.+.. .|....+.++|+-+ .+++|.||.-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G 115 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG 115 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence 567899999984 22346777664 56889987653 33444433 37888999999864 45899999999
Q ss_pred cEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 147 (685)
Q Consensus 69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (685)
.|+|.|+..+ ++...+.+|...|+.|.|+|+ .++++++|.|.+||+|++.++.++..+..
T Consensus 116 vIrVid~~~~----~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--------------- 176 (385)
T KOG1034|consen 116 VIRVIDVVSG----QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--------------- 176 (385)
T ss_pred EEEEEecchh----hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc---------------
Confidence 9999999887 777778899999999999997 57899999999999999999988776642
Q ss_pred ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656 148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 227 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 227 (685)
..+|...|.++.|+++|.++++++.|.++.
T Consensus 177 --------------------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk 206 (385)
T KOG1034|consen 177 --------------------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLK 206 (385)
T ss_pred --------------------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEE
Confidence 117899999999999999999999999999
Q ss_pred EEECCCCccccccc---------------cc----c-ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC-CCc-
Q 005656 228 RFNLQSGISRGSYL---------------DM----S-ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRD- 285 (685)
Q Consensus 228 ~~d~~~~~~~~~~~---------------~~----~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~- 285 (685)
+|++...+....+. .. + .....-|...|-|+.|- |.++++-|-++.|..|... -++
T Consensus 207 ~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~ 284 (385)
T KOG1034|consen 207 LWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEES 284 (385)
T ss_pred EEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhh
Confidence 99998443221111 00 0 00223577788888876 4688888889999999872 111
Q ss_pred ------------eEEEeecC-Cce--eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE--EEEe--cCCCCeEEEEEcCC
Q 005656 286 ------------LKSRWEVG-CSL--VKIVYHRVNGLLATVADDLVIRLFDVVALRMV--RKFE--GHTDRITDFCFSED 346 (685)
Q Consensus 286 ------------~~~~~~~~-~~i--~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~--~~~~--~h~~~I~~l~~spd 346 (685)
....+..+ ..| ...+|.|-+++||.|...|.|++||++...+. .++. .....|...+||.|
T Consensus 285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d 364 (385)
T KOG1034|consen 285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD 364 (385)
T ss_pred hhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence 12222222 233 34566777899999999999999999987653 1222 12456899999999
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 005656 347 GKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 347 g~~l~s~s~Dg~I~iwd~~ 365 (685)
|..|+....|++|.-||.-
T Consensus 365 gs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 365 GSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEEeCCCcEEEEEee
Confidence 9999999999999999854
No 167
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=1.1e-19 Score=181.18 Aligned_cols=203 Identities=18% Similarity=0.224 Sum_probs=151.9
Q ss_pred CCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEE
Q 005656 202 PTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVW 279 (685)
Q Consensus 202 ~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iw 279 (685)
...|+.+.|.| |...|++++.||.|.+|.+..+....... .+......|...|+.+.|+|- ...|++++.|-+|++|
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~-tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM-TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC-CcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 45678888888 67889999999999999998765433322 122234489999999999995 4678999999999999
Q ss_pred ECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe-eEEEEecCC-CCeEEEEEcCCCCEEEEEeCC
Q 005656 280 DFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-MVRKFEGHT-DRITDFCFSEDGKWLLSSGMD 356 (685)
Q Consensus 280 d~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-~~~~~~~h~-~~I~~l~~spdg~~l~s~s~D 356 (685)
|+.+++....+..+ ..|..++|+|+|+.+|+.+.||+|++|..++++ .++.-.+.. .+-..+.|.-||+++++.+.|
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 99999887777655 899999999999999999999999999988763 444433322 223457788899999988766
Q ss_pred C----cEEEEEcCC--CceeeEEeeccc--eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 357 G----SLRIWDVIL--ARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 357 g----~I~iwd~~~--~~~i~~~~~~~~--v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
. .|.+||..+ +..+.+...+.. +.--.+.+|...|+.++..+..|++|.
T Consensus 786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 4 688998765 334444333222 333356677777776666666899886
No 168
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=8.9e-20 Score=171.94 Aligned_cols=291 Identities=15% Similarity=0.198 Sum_probs=218.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC------CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 74 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd 74 (685)
|.|.|+++.||.+|+ +||+|+.|..+++|+++. .+++......|...|.|++|....+.+++|+.+++|...|
T Consensus 55 H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 55 HTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 889999999999998 999999999999999863 4666666667889999999999999999999999999999
Q ss_pred ecCCCCCCceeEec--ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656 75 FDTTDGDPRLLRFR--SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 152 (685)
Q Consensus 75 ~~~~~~~~~~~~~~--~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (685)
+.+. +.+... ....+.|..+..+|-.+.|++.+.+|.|.+||.+..+....+.
T Consensus 134 iEt~----qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~--------------------- 188 (609)
T KOG4227|consen 134 IETK----QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV--------------------- 188 (609)
T ss_pred cccc----eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee---------------------
Confidence 9886 333332 2234589999999998999999999999999997654221110
Q ss_pred ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEEC
Q 005656 153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNL 231 (685)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~ 231 (685)
| ....+....++.|+|.. ..+++.+..|-+-+||.
T Consensus 189 --------------------~------------------------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~ 224 (609)
T KOG4227|consen 189 --------------------L------------------------PANSGKNFYTAEFHPETPALILVNSETGGPNVFDR 224 (609)
T ss_pred --------------------e------------------------ecCCCccceeeeecCCCceeEEeccccCCCCceee
Confidence 0 00334567778888854 66788888899999998
Q ss_pred CCCccc-cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceEEEeecC-------CceeEEEEe
Q 005656 232 QSGISR-GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-------CSLVKIVYH 302 (685)
Q Consensus 232 ~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~-------~~i~~~~~~ 302 (685)
+..... ..+. ...........-.++.|+|.|..+.+.-....-.+||+.+. ..+..+.+. ..+.+++|.
T Consensus 225 R~~~~~~~~~~--~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~ 302 (609)
T KOG4227|consen 225 RMQARPVYQRS--MFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI 302 (609)
T ss_pred ccccchHHhhh--ccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee
Confidence 754331 1110 00011122233467899999999888776666778888874 444555532 345667776
Q ss_pred ecCCEEEEEeCCCeEEEEEcCC----------C-------------eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656 303 RVNGLLATVADDLVIRLFDVVA----------L-------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL 359 (685)
Q Consensus 303 ~~~~~l~~~~~dg~I~i~d~~~----------~-------------~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I 359 (685)
.+ ..+++|+++-.|++|.+.. | +.+..++||.+-++.+.|+|...+|++.+-.+.+
T Consensus 303 ~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~ 381 (609)
T KOG4227|consen 303 DD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSF 381 (609)
T ss_pred cc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhhe
Confidence 54 4499999999999998742 1 2245688999999999999999999999999999
Q ss_pred EEEEc
Q 005656 360 RIWDV 364 (685)
Q Consensus 360 ~iwd~ 364 (685)
++|.-
T Consensus 382 KlWS~ 386 (609)
T KOG4227|consen 382 KLWSD 386 (609)
T ss_pred ecccc
Confidence 99964
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=2.5e-19 Score=165.75 Aligned_cols=292 Identities=15% Similarity=0.255 Sum_probs=215.2
Q ss_pred eeEEeecccccCeeEEEEeC----CCc-EEEEecCCCcEEEEEecCCCCCCceeEec-c-cCCCCCeEEEEecC----CC
Q 005656 37 LQSVIREAHDNAIISLHFFA----NEP-VLMSASADNSIKMWIFDTTDGDPRLLRFR-S-GHSAPPLCIRFYAN----GR 105 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp----~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-~-~h~~~v~~i~~~~~----~~ 105 (685)
....++..|+.+|..++|++ +.. .++|+| .+.+.+|......+ .+.+... . .|......++|+-+ ..
T Consensus 29 ~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd~~~~~p 106 (385)
T KOG1034|consen 29 YTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYDSNTGNP 106 (385)
T ss_pred eeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEecCCCCCe
Confidence 34455568999999999985 333 555555 45888998765432 2333332 2 36667778888764 45
Q ss_pred EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEc
Q 005656 106 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 185 (685)
Q Consensus 106 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 185 (685)
+++.+|.-|.|+|.|+.+++....+.
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~------------------------------------------------------ 132 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYR------------------------------------------------------ 132 (385)
T ss_pred eEEeecceeEEEEEecchhhhcccee------------------------------------------------------
Confidence 88899999999999998887766553
Q ss_pred CccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC
Q 005656 186 QNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 264 (685)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 264 (685)
+|...|..+.+.|.. +++++++.|..|++||+++..++..+. ...+|.+.|.++.|+++|
T Consensus 133 --------------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-----G~egHrdeVLSvD~~~~g 193 (385)
T KOG1034|consen 133 --------------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-----GVEGHRDEVLSVDFSLDG 193 (385)
T ss_pred --------------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec-----ccccccCcEEEEEEcCCC
Confidence 778889999999965 788999999999999999999988875 334899999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCceEEEeec-----------------------------CCceeEEEEeecCCEEEEEeCCC
Q 005656 265 TLMISAGYHGDIKVWDFKGRDLKSRWEV-----------------------------GCSLVKIVYHRVNGLLATVADDL 315 (685)
Q Consensus 265 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------------------------~~~i~~~~~~~~~~~l~~~~~dg 315 (685)
.+++++|.|..+++|++...+....++. ...|-|+.|- |.++++=+-++
T Consensus 194 d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscen 271 (385)
T KOG1034|consen 194 DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCEN 271 (385)
T ss_pred CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCc
Confidence 9999999999999999985432211110 0112222222 67888888889
Q ss_pred eEEEEEcC-CC-------------eeEEEEecCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCCcee--eEEee--
Q 005656 316 VIRLFDVV-AL-------------RMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDVILARQI--DAIHV-- 375 (685)
Q Consensus 316 ~I~i~d~~-~~-------------~~~~~~~~h~~~I~~l~~--spdg~~l~s~s~Dg~I~iwd~~~~~~i--~~~~~-- 375 (685)
.|..|... -. ..+.++.-....|.-+.| .|-+++||.|...|.|++||+...... .++.+
T Consensus 272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~ 351 (385)
T KOG1034|consen 272 AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK 351 (385)
T ss_pred eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc
Confidence 99999761 11 223444444556666655 566789999999999999999877653 22322
Q ss_pred -ccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 376 -DVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 376 -~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
...|...+||.||.+|+..+.|+ .|.-|+.
T Consensus 352 ~~~tVRQ~sfS~dgs~lv~vcdd~-~Vwrwdr 382 (385)
T KOG1034|consen 352 SGSTVRQTSFSRDGSILVLVCDDG-TVWRWDR 382 (385)
T ss_pred ccceeeeeeecccCcEEEEEeCCC-cEEEEEe
Confidence 23399999999999999999887 8888874
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.6e-18 Score=178.05 Aligned_cols=328 Identities=16% Similarity=0.232 Sum_probs=231.9
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCee---eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656 7 ALAFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~ 83 (685)
+|.+++.|. +.+.. .+..+.+|+..++.. .+.....|.-.+++.+++|+++++|+|..||.|.+|.=-..+....
T Consensus 165 ~I~~~~~ge-~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 165 SIVDNNSGE-FKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred cEEEcCCce-EEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 566666666 33333 344577777766431 1111124777789999999999999999999999995332122223
Q ss_pred eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
..+.+.=|...|+++.|+++|.+|+|||..|.+-+|.+.+++. +-++
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP-------------------------------- 289 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP-------------------------------- 289 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-cccc--------------------------------
Confidence 3445566899999999999999999999999999999988762 1111
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
...++|..+.+|||+++.++...|..|.+..+.+......+...
T Consensus 290 ------------------------------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi 333 (792)
T KOG1963|consen 290 ------------------------------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGI 333 (792)
T ss_pred ------------------------------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCc
Confidence 44678999999999999999999999999988766554443221
Q ss_pred ccc---ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec------------CCceeEEEEeecCCEE
Q 005656 244 SER---SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------------GCSLVKIVYHRVNGLL 308 (685)
Q Consensus 244 ~~~---~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l 308 (685)
... ......+-.+.++++|.-+.++-.+..|.|.+||+.+...+..+.. .-.++.++.+..|.++
T Consensus 334 ~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m 413 (792)
T KOG1963|consen 334 KPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM 413 (792)
T ss_pred cCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence 111 1123456678899999777888899999999999988766554431 1356777777788898
Q ss_pred EEEeC--------C--CeEEEEEcCCCee----EEEE-ecCCCCeEEEEEcC-CCC-EEEEEeCCCcEEEEEcCCCc---
Q 005656 309 ATVAD--------D--LVIRLFDVVALRM----VRKF-EGHTDRITDFCFSE-DGK-WLLSSGMDGSLRIWDVILAR--- 368 (685)
Q Consensus 309 ~~~~~--------d--g~I~i~d~~~~~~----~~~~-~~h~~~I~~l~~sp-dg~-~l~s~s~Dg~I~iwd~~~~~--- 368 (685)
+++-. | ..+++|-...... ...+ ..|...+...++.+ ... ..++++.||.++||-+.+.+
T Consensus 414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~ 493 (792)
T KOG1963|consen 414 ATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIY 493 (792)
T ss_pred EEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccC
Confidence 88742 3 2577886654322 2222 35777766666654 223 78999999999999883321
Q ss_pred -------e--eeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 369 -------Q--IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 369 -------~--i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
+ +..+ +..++++++|+.||..|+++..| .|.+|+...
T Consensus 494 k~~s~W~c~~i~sy-~k~~i~a~~fs~dGslla~s~~~--~Itiwd~~~ 539 (792)
T KOG1963|consen 494 KKSSNWTCKAIGSY-HKTPITALCFSQDGSLLAVSFDD--TITIWDYDT 539 (792)
T ss_pred cCccceEEeeeecc-ccCcccchhhcCCCcEEEEecCC--EEEEecCCC
Confidence 1 1121 34569999999999888887644 999998655
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=3.9e-18 Score=174.74 Aligned_cols=274 Identities=10% Similarity=0.119 Sum_probs=186.3
Q ss_pred EEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHH
Q 005656 61 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRA 139 (685)
Q Consensus 61 l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 139 (685)
.++...++.|.+|++++. +..+.+.... +.+.+..++++|++++|++++ .++.|.+|++...........
T Consensus 5 y~~~~~~~~I~~~~~~~~-g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~------- 75 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE-GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE------- 75 (330)
T ss_pred EEEcCCCCCEEEEEECCC-CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-------
Confidence 444567999999999643 3334445443 346678899999999887765 478899999862211111100
Q ss_pred hhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE
Q 005656 140 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 219 (685)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 219 (685)
. ........++++|+|+++++
T Consensus 76 ------------------------------------------------------~-----~~~~~p~~i~~~~~g~~l~v 96 (330)
T PRK11028 76 ------------------------------------------------------S-----PLPGSPTHISTDHQGRFLFS 96 (330)
T ss_pred ------------------------------------------------------e-----cCCCCceEEEECCCCCEEEE
Confidence 0 11234568999999999888
Q ss_pred Ee-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEE-------Ee
Q 005656 220 GT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS-------RW 290 (685)
Q Consensus 220 g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~-------~~ 290 (685)
++ .++.|.+|++.......... ....+.....+++++|+++++++++ .++.|.+||+.+...+. ..
T Consensus 97 ~~~~~~~v~v~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~ 171 (330)
T PRK11028 97 ASYNANCVSVSPLDKDGIPVAPI-----QIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT 171 (330)
T ss_pred EEcCCCeEEEEEECCCCCCCCce-----eeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec
Confidence 76 47899999997432111110 0002334467788999999886655 66999999997632221 22
Q ss_pred ecCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC--C--eeEEEEecC------CCCeEEEEEcCCCCEEEEEe-CCCc
Q 005656 291 EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA--L--RMVRKFEGH------TDRITDFCFSEDGKWLLSSG-MDGS 358 (685)
Q Consensus 291 ~~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~--~--~~~~~~~~h------~~~I~~l~~spdg~~l~s~s-~Dg~ 358 (685)
..+.....+.|+|+|++++++.. ++.|.+|++.. + +.+..+..+ ......+.++|+|++++++. .++.
T Consensus 172 ~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~ 251 (330)
T PRK11028 172 VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL 251 (330)
T ss_pred CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe
Confidence 23456678999999999988876 89999999973 3 334444322 12234689999999999885 4789
Q ss_pred EEEEEcCCCc----eeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 359 LRIWDVILAR----QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 359 I~iwd~~~~~----~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
|.+|++.... .+..+........+.|+|||++|++++...+.|.+|...
T Consensus 252 I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 252 ISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999996432 233333333467899999999999999766699999754
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=3.9e-18 Score=174.75 Aligned_cols=296 Identities=13% Similarity=0.145 Sum_probs=191.2
Q ss_pred EEEEEeCCCcEEEEeCCC-Ce--eeEEeecccccCeeEEEEeCCCcEEEEe-cCCCcEEEEEecCCCCCCceeEecccCC
Q 005656 17 LLASGASSGVISIWNLEK-RR--LQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHS 92 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~-~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~~~~~h~ 92 (685)
+.++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|+++ ..++.|.+|+++. ++........ ...
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-~g~l~~~~~~-~~~ 79 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-DGALTFAAES-PLP 79 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-CCceEEeeee-cCC
Confidence 344556789999999964 43 444443 44678899999999988665 4588999999973 2322222222 233
Q ss_pred CCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656 93 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 171 (685)
Q Consensus 93 ~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (685)
..+..++|+|+++++++++. ++.|.+|++.+........
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~---------------------------------------- 119 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI---------------------------------------- 119 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce----------------------------------------
Confidence 45788999999999988875 7899999986432111000
Q ss_pred EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCccccccccccccccCC
Q 005656 172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYA 250 (685)
Q Consensus 172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 250 (685)
... .......+++++|+|+++++++ .++.|.+||+.+............ . ..
T Consensus 120 ------------------------~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~-~-~~ 172 (330)
T PRK11028 120 ------------------------QII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV-T-TV 172 (330)
T ss_pred ------------------------eec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce-e-cC
Confidence 000 1123356788999999986655 569999999986332211000000 0 01
Q ss_pred CCcCEEEEEEcCCCCEEEEEEC-CCeEEEEECCC--Cce--EEEeec-------CCceeEEEEeecCCEEEEEeC-CCeE
Q 005656 251 HNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKG--RDL--KSRWEV-------GCSLVKIVYHRVNGLLATVAD-DLVI 317 (685)
Q Consensus 251 h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~--~~~--~~~~~~-------~~~i~~~~~~~~~~~l~~~~~-dg~I 317 (685)
.......+.|+|++++++++.. +++|.+|++.. ++. ...+.. ......+.++|++++++++.. ++.|
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I 252 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI 252 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence 1234678999999999988775 89999999973 332 333221 112335889999999888854 7899
Q ss_pred EEEEcCCCe----eEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC--CCce--eeEEeeccceEEEEE
Q 005656 318 RLFDVVALR----MVRKFEGHTDRITDFCFSEDGKWLLSSGM-DGSLRIWDVI--LARQ--IDAIHVDVSITALSL 384 (685)
Q Consensus 318 ~i~d~~~~~----~~~~~~~h~~~I~~l~~spdg~~l~s~s~-Dg~I~iwd~~--~~~~--i~~~~~~~~v~~v~~ 384 (685)
.+|++.... .+...... .....+.|+|||++|+++.. +++|.+|++. ++.+ +..+.......+++|
T Consensus 253 ~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 253 SVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 999996543 22322221 24568899999999998774 8999999875 4433 333433333555555
No 173
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.5e-19 Score=174.33 Aligned_cols=230 Identities=19% Similarity=0.270 Sum_probs=165.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|+|.|+|+.|+.||. +|++|+.|-.+.|||.-..++++.+..||...|.++.|.| +.++++||..|..|+++|++..
T Consensus 49 H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred ccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 899999999999999 9999999999999999999999999999999999999999 4569999999999999999853
Q ss_pred C------CCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656 79 D------GDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 151 (685)
Q Consensus 79 ~------~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (685)
. +..........|...|..|+-.|++ +.+.+++.||+|+-+|++.......-...+.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~---------------- 191 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS---------------- 191 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH----------------
Confidence 2 1234455667899999999999997 7888999999999999976432211100000
Q ss_pred CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEE
Q 005656 152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFN 230 (685)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d 230 (685)
.+.......-...|+.++|. ..++++|+++-..++||
T Consensus 192 ------------------------------------------~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 192 ------------------------------------------ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred ------------------------------------------HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 00000012245678999995 46889999999999999
Q ss_pred CCCC--------cc----------ccccccccccccCC-CC---cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 005656 231 LQSG--------IS----------RGSYLDMSERSNYA-HN---GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS 288 (685)
Q Consensus 231 ~~~~--------~~----------~~~~~~~~~~~~~~-h~---~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (685)
.+.. .. +..|.........+ .. ..++-+.|+|+|.-++..-..-.|+++|+..++...
T Consensus 230 ~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 230 RRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred hhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 4321 10 11110000000001 01 125667899999877766556689999998776544
Q ss_pred E
Q 005656 289 R 289 (685)
Q Consensus 289 ~ 289 (685)
.
T Consensus 310 ~ 310 (758)
T KOG1310|consen 310 P 310 (758)
T ss_pred e
Confidence 3
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=3e-19 Score=179.07 Aligned_cols=269 Identities=12% Similarity=0.194 Sum_probs=209.9
Q ss_pred CeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCcee
Q 005656 48 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 127 (685)
Q Consensus 48 ~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 127 (685)
.|..++|-|||..|+.+. +..+.+||.+.+ ..+.++++|...|.|++|+.||+.+++|+.|..|.+|+-.-....
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG----~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG----TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc----ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee
Confidence 899999999999777764 457889988877 778889999999999999999999999999999999985332211
Q ss_pred eEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE
Q 005656 128 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA 207 (685)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~ 207 (685)
+- .|...|.|
T Consensus 89 kY----------------------------------------------------------------------SH~D~IQC 98 (1081)
T KOG1538|consen 89 KY----------------------------------------------------------------------SHNDAIQC 98 (1081)
T ss_pred ee----------------------------------------------------------------------ccCCeeeE
Confidence 10 67889999
Q ss_pred EEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 005656 208 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK 287 (685)
Q Consensus 208 ~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (685)
+.|+|....+++++-+ ..-+|.......... .....+.+.+|..||++++.|-.+|+|.+-+-......
T Consensus 99 MsFNP~~h~LasCsLs-dFglWS~~qK~V~K~----------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 99 MSFNPITHQLASCSLS-DFGLWSPEQKSVSKH----------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eecCchHHHhhhcchh-hccccChhhhhHHhh----------hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 9999999988887654 355676544332211 34567889999999999999999999999875433333
Q ss_pred EEee---cCCceeEEEEeecCC-----EEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656 288 SRWE---VGCSLVKIVYHRVNG-----LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL 359 (685)
Q Consensus 288 ~~~~---~~~~i~~~~~~~~~~-----~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I 359 (685)
..-. .+++|.+++|+|... .+++.....++.+|.+. |+.+..-+.-.-...|+.+.++|.++..|+.|+.+
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 3222 248999999999753 78888888888888765 45454434344456789999999999999999999
Q ss_pred EEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 360 RIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 360 ~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
++|. +.|-.+.++. .+..|++++..|++++.+.|+.|| +|--|+
T Consensus 247 ~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG-TiACyN 291 (1081)
T KOG1538|consen 247 SLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG-TIACYN 291 (1081)
T ss_pred EEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccC-eeehhh
Confidence 9997 4565555554 455599999999999999999998 888775
No 175
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.2e-18 Score=174.31 Aligned_cols=476 Identities=14% Similarity=0.121 Sum_probs=265.3
Q ss_pred cCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEE
Q 005656 102 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181 (685)
Q Consensus 102 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (685)
|...+++....||.+|+|++..++...++.... ...+.....
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--------------------------------------~~s~t~~~~ 44 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--------------------------------------SLSGTCTYT 44 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccch--------------------------------------hccCcceeE
Confidence 346789999999999999999998877764211 112233344
Q ss_pred EEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEc
Q 005656 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 261 (685)
Q Consensus 182 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 261 (685)
.|.+.-.....+... --....-+.+-..++.|...|.|.+|+...|+....+. ...|.+.|.++.++
T Consensus 45 ~w~L~~~~s~~k~~~-------~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~s------t~~h~~~v~~~~~~ 111 (541)
T KOG4547|consen 45 KWGLSADYSPMKWLS-------LEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLS------TDKHYGNVNEILDA 111 (541)
T ss_pred EEEEEeccchHHHHh-------HHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEe------cCCCCCcceeeecc
Confidence 555322111110000 00011123345678899999999999999999887774 23899999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEE
Q 005656 262 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 340 (685)
Q Consensus 262 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~ 340 (685)
.+-..|.+++.|+.+..|+......++.+... ..+.+++++|||..+++++ +.|++||+++++.+..|.||.++|.+
T Consensus 112 ~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t 189 (541)
T KOG4547|consen 112 QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRT 189 (541)
T ss_pred cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEE
Confidence 98899999999999999999999999888765 6788999999999999987 79999999999999999999999999
Q ss_pred EEEcCC-----CCEEEEE-eCCCcEEEEEcCC----CceeeEEeeccc-eEEEE-EcCCCC--eEEEEEeCCCeEEEEEc
Q 005656 341 FCFSED-----GKWLLSS-GMDGSLRIWDVIL----ARQIDAIHVDVS-ITALS-LSPNMD--VLATAHVDQNGVYLWVN 406 (685)
Q Consensus 341 l~~spd-----g~~l~s~-s~Dg~I~iwd~~~----~~~i~~~~~~~~-v~~v~-~spdg~--~Lat~~~d~~~I~lW~~ 406 (685)
+.|..+ |.++.++ ..+..+.+|-+.. +.....+..+.. |+.=. ...++. +..+.+..+ ++..|..
T Consensus 190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~-g~v~~~~ 268 (541)
T KOG4547|consen 190 LSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIP-GIVHLKL 268 (541)
T ss_pred EEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccccccccccceEEeeeccC-ceeeecc
Confidence 999876 6666654 4566688887654 233344443333 32222 223333 333333333 4444432
Q ss_pred CCCcCCCCCCCCCCCCccceeecCCCccCCCCcCCCCC--CCCCCcCCCCCCCCCCCCCCcCCCCc------CceeecCC
Q 005656 407 RCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENS--SQPDVHRTDRVPKDSFGLPTFKQQIP------DLVTLSLL 478 (685)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ls~~ 478 (685)
+..-.-... ....-........|.........+... -..-.............+...-.+.. +.+++...
T Consensus 269 ~nl~~l~~~--~~~kv~~~~~~~s~g~~a~~~~~~~~~~~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~~~~~~~ 346 (541)
T KOG4547|consen 269 SNLIILLHK--KIVKVNGYNADSSKGFLAALFGIDKAHALLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGKLKLVTS 346 (541)
T ss_pred ccHHHHhcC--ccccccceeeecccchhhhhcccchhhhhhhcccccCchhhhhhhhhcchhhhhhhhccCCcccceeee
Confidence 111100000 000000001111111000000000000 00000000000000000000000000 00011110
Q ss_pred cHhHHhhccchHHHHhhcCC-CCCCCCCCCCCccccCCCCCCCccccCCCCCccccccccc-cCCCCCCCCCccHHHHHH
Q 005656 479 PKSQWQSLINLDIIKARNKP-IEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLK-VGNKTKPDIPVSQFIQLL 556 (685)
Q Consensus 479 ~~~~~~~~~~l~~i~~r~k~-~~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 556 (685)
-..+=|-..|- .++-+.+ ...+++|... -||.... ... .+...++.-+....+ .....+.....-.+...+
T Consensus 347 k~~~rqv~~n~--~~k~~~~~~~q~~~p~~~--~l~v~~~-~g~--iEv~~earl~~l~i~~~~~~~k~~~~tll~s~~l 419 (541)
T KOG4547|consen 347 KEGKRQVVLNS--VAKLGEAEVIQEEPPLTE--DLPVLTK-GGD--IEVSTEARLSALDINLTSNADKSDESTLLASVSL 419 (541)
T ss_pred ecccceeecch--hhhhcchhhhcccCcchh--cchhhhc-CCc--ceeeehhhhhhcccccccccchhhhhccchhhhh
Confidence 00000000000 0011111 0001111110 0111000 000 000000000000000 111122222334466778
Q ss_pred hhccccCChHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHH
Q 005656 557 HSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCR-NNFEFIQAVIRLFL 635 (685)
Q Consensus 557 ~~~~~~~~~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~e~~~~~l~~~l 635 (685)
.|++.++++....++|.+.+|..|+.++-+|.+ +.+..|++.+..+++++ .+-.....|+...|
T Consensus 420 ~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~---------------st~~pll~ela~rlq~~~~~~~~~l~w~k~~l 484 (541)
T KOG4547|consen 420 NQALSSRDSHILTDVLISRDEELIKSTVLRMEE---------------STAPPLLEELAPRLQSRASRGRILLVWLKTRL 484 (541)
T ss_pred hhhhcccccccchhhhccCChHHHHHHHhhcCh---------------hhccchhccchhhhccccccCchhhhhhhhhh
Confidence 899999999999999999999999999999965 66889999999999999 66778899999999
Q ss_pred HhhccccccchHHHHHHHHH
Q 005656 636 KIHGETVRCHTKLQDKARKL 655 (685)
Q Consensus 636 ~~h~~~l~~~~~l~~~~~~l 655 (685)
-.|+++|++.|+..+.+..+
T Consensus 485 ~~h~~yl~sv~~~~~~l~~~ 504 (541)
T KOG4547|consen 485 TSHNSYLSSVPDQLETLSGK 504 (541)
T ss_pred hcccceeecCcchhhHHHHH
Confidence 99999999998744444333
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=9.4e-19 Score=159.25 Aligned_cols=277 Identities=17% Similarity=0.285 Sum_probs=203.3
Q ss_pred cEEEEEEc--cCCCCEEEEEe----CCCcEEEEeC--CCCeeeEEeecccccCeeEEEEeCCCc-----EEEEecCCCcE
Q 005656 4 AVTALAFS--SDGQPLLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEP-----VLMSASADNSI 70 (685)
Q Consensus 4 ~V~~l~fs--pdg~~~latg~----~dg~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~~~-----~l~s~s~D~~v 70 (685)
++.++.|| |+.+..||.|+ +.+.|.|-.+ .+++.+..-...|.-+++.+.|.|+.. +|||++ -.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 46788887 56667899997 4566776654 456655544447999999999999873 666654 379
Q ss_pred EEEEecCCCCCCceeEe-----cccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccc
Q 005656 71 KMWIFDTTDGDPRLLRF-----RSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM 144 (685)
Q Consensus 71 ~iWd~~~~~~~~~~~~~-----~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 144 (685)
|+|.+...+....+... -..+.+++++..|+. +-+++.+++-|-+..|||++++..-
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~----------------- 186 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG----------------- 186 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc-----------------
Confidence 99998754433222222 235678999999986 5678889999999999999765210
Q ss_pred cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 005656 145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 224 (685)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 224 (685)
T Consensus 187 -------------------------------------------------------------------------------- 186 (364)
T KOG0290|consen 187 -------------------------------------------------------------------------------- 186 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEe---ec-CCceeEE
Q 005656 225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW---EV-GCSLVKI 299 (685)
Q Consensus 225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~---~~-~~~i~~~ 299 (685)
....+ ..+|...|..++|...+ +.+++.|.||.+++||++.......+ .. +.+...+
T Consensus 187 ----------~vkTQ--------LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 187 ----------TVKTQ--------LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred ----------ceeeE--------EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 00001 11899999999998865 57899999999999999876533322 22 4678888
Q ss_pred EEeecCC-EEEEEeCC-CeEEEEEcCCC-eeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCc------e
Q 005656 300 VYHRVNG-LLATVADD-LVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILAR------Q 369 (685)
Q Consensus 300 ~~~~~~~-~l~~~~~d-g~I~i~d~~~~-~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~------~ 369 (685)
+|++... ++|+-..| ..|.|.|++.. .++.++++|.+.|++++|.|.. ..|+||+.|..+.+||+...- +
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 8987654 66665544 58999999864 7789999999999999999954 589999999999999997532 3
Q ss_pred eeEEeeccceEEEEEcC-CCCeEEEEEeC
Q 005656 370 IDAIHVDVSITALSLSP-NMDVLATAHVD 397 (685)
Q Consensus 370 i~~~~~~~~v~~v~~sp-dg~~Lat~~~d 397 (685)
+-.+.....|+.+.|++ .+++++.+...
T Consensus 329 ilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 329 ILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hhhhhccceeeeeeecccCCCEEEEEecC
Confidence 33445566699999996 57788888754
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.6e-19 Score=165.69 Aligned_cols=274 Identities=16% Similarity=0.279 Sum_probs=199.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCC-
Q 005656 16 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS- 92 (685)
Q Consensus 16 ~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~- 92 (685)
..+|++-+.|.|++||..+++.+..++ +|...++.+.|.. ....+.+++.||+|++||+.......+.. ..+|.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~--~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS--WTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee--ccCCCC
Confidence 368999999999999999999999998 9999999999988 45689999999999999998875543332 33444
Q ss_pred CCCeEEEEecCCCEEEEEe----CCCceEEEEeecCce-eeEechhhHHHHHhhccccccccccCceeeeecccccccCC
Q 005656 93 APPLCIRFYANGRHILSAG----QDRAFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 167 (685)
Q Consensus 93 ~~v~~i~~~~~~~~l~s~s----~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (685)
.+..|++..-+++.+++|. .|-.|.+||++..++ +..+.
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~------------------------------------ 161 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN------------------------------------ 161 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh------------------------------------
Confidence 4566666655666776664 366788999887665 22221
Q ss_pred cceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656 168 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER 246 (685)
Q Consensus 168 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~ 246 (685)
..|...|+++.|+| +.+.|++|+.||-|.+||+.....-..+.
T Consensus 162 -------------------------------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~----- 205 (376)
T KOG1188|consen 162 -------------------------------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL----- 205 (376)
T ss_pred -------------------------------hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH-----
Confidence 16789999999999 55889999999999999997653322221
Q ss_pred ccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC-------------CceeEEEEeecCCEEEEEe
Q 005656 247 SNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG-------------CSLVKIVYHRVNGLLATVA 312 (685)
Q Consensus 247 ~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~ 312 (685)
....|...|.++.|...+ +.|.+-+..++..+|+++.+.....+..+ ..+.......+....++++
T Consensus 206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g 285 (376)
T KOG1188|consen 206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAG 285 (376)
T ss_pred HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEec
Confidence 122677889999998876 46888889999999999988755444322 1111111122334555554
Q ss_pred C-CCeEEEEEcC---C---CeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 313 D-DLVIRLFDVV---A---LRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 313 ~-dg~I~i~d~~---~---~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
. -+...++-+. + .+.+..+.+ |..-|.++.|...+..+.||+.||.+.+|..
T Consensus 286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 286 TDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 4 4555554333 2 344556665 6777889999888899999999999999986
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=6.3e-20 Score=181.57 Aligned_cols=266 Identities=15% Similarity=0.206 Sum_probs=194.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC--------CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK--------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 72 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~--------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~i 72 (685)
|.+.|++++|.|-.. .|++++.||.|.+|++.. -+.+.+++ +|.++|.|++..+++..+++|+.||+|+.
T Consensus 293 ~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred chhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccCceeee
Confidence 556788999999876 999999999999999932 34677888 99999999999999999999999999999
Q ss_pred EEecCCC------CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656 73 WIFDTTD------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE 146 (685)
Q Consensus 73 Wd~~~~~------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (685)
|++.... ....+...+.||...|+.+++++....|++++.||+++.|....... ..+...
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~------------- 436 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP------------- 436 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc-------------
Confidence 9765321 11234456789999999999999988999999999999999765543 111100
Q ss_pred cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCc
Q 005656 147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGW 225 (685)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~ 225 (685)
...+...++.+.... ...++....|.
T Consensus 437 -----------------------------------------------------~e~g~Plsvd~~ss~~a~~~~s~~~~~ 463 (577)
T KOG0642|consen 437 -----------------------------------------------------KEHGYPLSVDRTSSRPAHSLASFRFGY 463 (577)
T ss_pred -----------------------------------------------------cccCCcceEeeccchhHhhhhhccccc
Confidence 111222333333222 22233333333
Q ss_pred EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeec
Q 005656 226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRV 304 (685)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~ 304 (685)
-.++++..+.....+..... ........+.-+.++|.+.+.+++..|+.|+++|..++.++..... ...++++++.|+
T Consensus 464 ~~~~~~ev~s~~~~~~s~~~-~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n 542 (577)
T KOG0642|consen 464 TSIDDMEVVSDLLIFESSAS-PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN 542 (577)
T ss_pred ccchhhhhhhheeeccccCC-CcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCC
Confidence 34444444433333321110 1112234577788899999999999999999999999998876654 488999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC
Q 005656 305 NGLLATVADDLVIRLFDVVALRMVRKFEGHTD 336 (685)
Q Consensus 305 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 336 (685)
|.+|++++.|+.+++|.+....++.....|..
T Consensus 543 g~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 543 GPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred CceEEeecCCceeehhhccchheeeccccccc
Confidence 99999999999999999988888877766653
No 179
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.83 E-value=4.6e-19 Score=163.85 Aligned_cols=306 Identities=17% Similarity=0.240 Sum_probs=219.9
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEE-EecCCCcEEEEEecCCCCCCceeE
Q 005656 8 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLR 86 (685)
Q Consensus 8 l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~D~~v~iWd~~~~~~~~~~~~ 86 (685)
++|||+|+ ++|+.+.- .+.|-|.++-+..+.+. --+.|..+.|..|.-+++ ....|+.|.+|++... .-..
T Consensus 14 c~fSp~g~-yiAs~~~y-rlviRd~~tlq~~qlf~--cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp----ew~c 85 (447)
T KOG4497|consen 14 CSFSPCGN-YIASLSRY-RLVIRDSETLQLHQLFL--CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP----EWYC 85 (447)
T ss_pred eeECCCCC-eeeeeeee-EEEEeccchhhHHHHHH--HHHHhhheeeeccceeeeeeeeccceEEEEEeecc----eeEE
Confidence 57999999 99988754 78899988877666554 346788999999887555 4567899999999876 4445
Q ss_pred ecccCCCCCeEEEEecCCCEEEE-EeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656 87 FRSGHSAPPLCIRFYANGRHILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 165 (685)
Q Consensus 87 ~~~~h~~~v~~i~~~~~~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (685)
.+.....++.+++|+|||+.++. ..-|-.|.+|++.+.+....-
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~----------------------------------- 130 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP----------------------------------- 130 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-----------------------------------
Confidence 55667888999999999976664 556889999998766532211
Q ss_pred CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC---cccccccc
Q 005656 166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG---ISRGSYLD 242 (685)
Q Consensus 166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~---~~~~~~~~ 242 (685)
..+..+..++|+|+|++.+..+.-.....+++.+. ...+.+.
T Consensus 131 ----------------------------------~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~- 175 (447)
T KOG4497|consen 131 ----------------------------------HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK- 175 (447)
T ss_pred ----------------------------------ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC-
Confidence 22445688999999999998876543333333221 1122221
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 322 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~ 322 (685)
-.+-..+++.|+|+|..+++ ||---.-.+..+..+-.+..+.|+|.+++|++|+.|+.+||.+-
T Consensus 176 -------~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 176 -------LDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred -------CCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 34456789999999987764 44322222223444567889999999999999999999988764
Q ss_pred CCCeeEEEE------------------------------------------------------------e------cCCC
Q 005656 323 VALRMVRKF------------------------------------------------------------E------GHTD 336 (685)
Q Consensus 323 ~~~~~~~~~------------------------------------------------------------~------~h~~ 336 (685)
-+.+...+| + ...-
T Consensus 240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~ 319 (447)
T KOG4497|consen 240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC 319 (447)
T ss_pred eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence 433222111 0 0011
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 337 RITDFCFSEDGKWLLSSG--MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 337 ~I~~l~~spdg~~l~s~s--~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
.+.-++||+|..+++|-. .-+.+-+||+..-++...+....+|....|+|....|+.+.... .+|+|....
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~s-rLY~W~psg 392 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKS-RLYFWAPSG 392 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCc-eEEEEcCCC
Confidence 366789999999999875 34679999999988888888888999999999999888887665 899998554
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.2e-18 Score=183.61 Aligned_cols=289 Identities=19% Similarity=0.323 Sum_probs=210.8
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecc--cccCeeEEEEeCC--CcEEEEecCCCcEEEEEecCCC-
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD- 79 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~~~~- 79 (685)
-..+.|+|-.. .++++...-.|+|||.+.++....+..+ ....|+.+.+-.+ ..++++|+.||.||||+--...
T Consensus 1067 pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 34677888777 7888887788999999999988777632 2457999998764 4599999999999999643332
Q ss_pred CCCceeEecccCC-------CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656 80 GDPRLLRFRSGHS-------APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 152 (685)
Q Consensus 80 ~~~~~~~~~~~h~-------~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (685)
+.++++....+-. +.=.-+.|-....+|+++|.-..|+|||.........+..
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~-------------------- 1205 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY-------------------- 1205 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc--------------------
Confidence 4455555443321 1123456777666788877789999999987776555432
Q ss_pred ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEEC
Q 005656 153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGNFAVLGTAGGWIERFNL 231 (685)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~dg~i~~~d~ 231 (685)
+....++++.-+ ..|+.+++|..||.|++||.
T Consensus 1206 -----------------------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~ 1238 (1387)
T KOG1517|consen 1206 -----------------------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDR 1238 (1387)
T ss_pred -----------------------------------------------CCCccceeecccccCCceEEEeecCCceEEeec
Confidence 223445555443 34799999999999999998
Q ss_pred CCCccccccccccccccCCCCcC--EEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEe------ecCCceeEEEEe
Q 005656 232 QSGISRGSYLDMSERSNYAHNGE--VVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRW------EVGCSLVKIVYH 302 (685)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~i~~~~~~ 302 (685)
+........ .....|+.. |..+.+.+.|- .+++|+.||.|++||++.......+ ..++..+++..|
T Consensus 1239 R~a~~ds~v-----~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1239 RMAPPDSLV-----CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH 1313 (1387)
T ss_pred ccCCccccc-----eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec
Confidence 865442111 123377777 99999988774 4999999999999999974222211 123459999999
Q ss_pred ecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656 303 RVNGLLATVADDLVIRLFDVVALRMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 303 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
++...+|+|+. +.|+||++... .+..++. ..+.+.+++|+|..-.+|+|+.|.+|.||......
T Consensus 1314 ~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1314 EHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99999999998 99999998643 3333322 23568999999998899999999999999876543
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=8.1e-20 Score=180.79 Aligned_cols=270 Identities=21% Similarity=0.338 Sum_probs=200.0
Q ss_pred EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC----CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 39 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT----TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 39 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~----~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
.++. .|.+.|+.++|.|..+.|++++.||++++|++.. .....+.+.++.+|.+||.|+++.+++.++++||-||
T Consensus 288 ~tl~-s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 288 FTLR-SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeee-cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 3454 7999999999999999999999999999999822 2344567888999999999999999999999999999
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
+|+.|++......... ... ...
T Consensus 367 ~I~~w~~p~n~dp~ds-------------------------------------------------------~dp---~vl 388 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDS-------------------------------------------------------YDP---SVL 388 (577)
T ss_pred eeeeeccCCCCCcccc-------------------------------------------------------cCc---chh
Confidence 9999987522111000 000 001
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECC
Q 005656 195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYH 273 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~d 273 (685)
.....+|...++.+++|+....|++++.||+++.|+...... ..|.. ..-.+.-..+.+-... ...++...-
T Consensus 389 ~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~------~~e~g~Plsvd~~ss~~a~~~~s~~~ 461 (577)
T KOG0642|consen 389 SGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE------PKEHGYPLSVDRTSSRPAHSLASFRF 461 (577)
T ss_pred ccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC------ccccCCcceEeeccchhHhhhhhccc
Confidence 112238889999999999999999999999999999887766 33321 0122233444443322 112222222
Q ss_pred CeEEEEECCCCceEEEeecC--------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC
Q 005656 274 GDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 345 (685)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 345 (685)
+.--++++........+... ..+..+..+|.+.+.+++..|+.|+++|..+++++.....|...++++++.|
T Consensus 462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ 541 (577)
T KOG0642|consen 462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP 541 (577)
T ss_pred ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC
Confidence 22333333333333333221 4577889999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656 346 DGKWLLSSGMDGSLRIWDVILARQIDAIH 374 (685)
Q Consensus 346 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~ 374 (685)
+|-+|++++.||.+++|.+....++....
T Consensus 542 ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 542 NGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred CCceEEeecCCceeehhhccchheeeccc
Confidence 99999999999999999998777665543
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.3e-19 Score=164.11 Aligned_cols=270 Identities=16% Similarity=0.210 Sum_probs=202.4
Q ss_pred cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCceEEEEeecCceeeEechhhHH
Q 005656 59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 136 (685)
Q Consensus 59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 136 (685)
..+|++-..|+|++||..++ ..+..+++|...++.++|.. ....+.+|+.||+|++||++.......+....
T Consensus 41 ~~vav~lSngsv~lyd~~tg----~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-- 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG----QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ-- 114 (376)
T ss_pred eeEEEEecCCeEEEEeccch----hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC--
Confidence 57888888999999999886 77888899999999999987 36688999999999999998776544332100
Q ss_pred HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656 137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 216 (685)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 216 (685)
....+..+++..-.++.
T Consensus 115 ---------------------------------------------------------------~~~~~f~~ld~nck~~i 131 (376)
T KOG1188|consen 115 ---------------------------------------------------------------QSGTPFICLDLNCKKNI 131 (376)
T ss_pred ---------------------------------------------------------------CCCCcceEeeccCcCCe
Confidence 11345677777778888
Q ss_pred EEEEec----CCcEEEEECCCCcc-ccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCC----ce
Q 005656 217 AVLGTA----GGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR----DL 286 (685)
Q Consensus 217 l~~g~~----dg~i~~~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~----~~ 286 (685)
+++|+. +-.|.+||++..+. .+.+.. .|...|+++.|+|.+ +.|++||.||.|.+||++.. .+
T Consensus 132 i~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL 204 (376)
T KOG1188|consen 132 IACGTELTRSDASVVLWDVRSEQQLLRQLNE-------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL 204 (376)
T ss_pred EEeccccccCceEEEEEEeccccchhhhhhh-------hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH
Confidence 888864 56799999998776 666543 899999999999965 78999999999999999754 35
Q ss_pred EEEeecCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCeeEEEEecCC------------CCeEEEEEcC-CCCEEEE
Q 005656 287 KSRWEVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRMVRKFEGHT------------DRITDFCFSE-DGKWLLS 352 (685)
Q Consensus 287 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------------~~I~~l~~sp-dg~~l~s 352 (685)
..++.+.+.|.++.|+.++ +.+.+-+...+..+|+++.+.....+.... ..+... .+| +....+.
T Consensus 205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l 283 (376)
T KOG1188|consen 205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCAL 283 (376)
T ss_pred HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEE
Confidence 5677778889999999887 368888889999999999887655544221 112222 223 4445555
Q ss_pred EeC-CCcEEEEEcC---CC---ceeeEEeeccc--eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 353 SGM-DGSLRIWDVI---LA---RQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 353 ~s~-Dg~I~iwd~~---~~---~~i~~~~~~~~--v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
++. -|...++-+. ++ +.+..+..+.. |+++.|...+.++.+|+.|| .+.+|.+
T Consensus 284 ~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG-~l~~Wk~ 345 (376)
T KOG1188|consen 284 AGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDG-LLQAWKV 345 (376)
T ss_pred eccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCc-eEEEEec
Confidence 544 5666666443 33 33344444332 99999999999999999998 9999974
No 183
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.5e-18 Score=163.65 Aligned_cols=289 Identities=15% Similarity=0.203 Sum_probs=214.5
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC--CCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCCCceEEEE
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--DGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 120 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~--~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd 120 (685)
+|.+.|.++.|+.++++|++|+.|..+++|+++.. ...++++... ..|...|.|++|...++++++|+.+++|...|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 89999999999999999999999999999998643 1222333332 34568999999999999999999999999999
Q ss_pred eecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656 121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200 (685)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 200 (685)
+++.+.+..+... .
T Consensus 134 iEt~qsi~V~~~~------------------------------------------------------------------~ 147 (609)
T KOG4227|consen 134 IETKQSIYVANEN------------------------------------------------------------------N 147 (609)
T ss_pred cccceeeeeeccc------------------------------------------------------------------C
Confidence 9887765544211 3
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEE
Q 005656 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVW 279 (685)
Q Consensus 201 ~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iw 279 (685)
..+.|..+..+|..+.+++.+.+|.|.+||.+......... ...........+.|+|.. .+|++.+..+.+-+|
T Consensus 148 ~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~ 222 (609)
T KOG4227|consen 148 NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-----LPANSGKNFYTAEFHPETPALILVNSETGGPNVF 222 (609)
T ss_pred cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-----eecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence 45689999999999999999999999999998765322211 011233456788899865 577888888999999
Q ss_pred ECCCCc-eEEEeec----C---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee-EEEEecCCC-------CeEEEEE
Q 005656 280 DFKGRD-LKSRWEV----G---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTD-------RITDFCF 343 (685)
Q Consensus 280 d~~~~~-~~~~~~~----~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~-------~I~~l~~ 343 (685)
|.+... .+..... . ..-..+.|+|+|+.+.+--....-.+||+-+.++ +..+. |+. .+.+++|
T Consensus 223 D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F 301 (609)
T KOG4227|consen 223 DRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTF 301 (609)
T ss_pred eeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeee
Confidence 988542 1111111 1 2235688999999888776666777889887544 33333 332 4667888
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC-----------------------ceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCC
Q 005656 344 SEDGKWLLSSGMDGSLRIWDVILA-----------------------RQIDAIHVDVS-ITALSLSPNMDVLATAHVDQN 399 (685)
Q Consensus 344 spdg~~l~s~s~Dg~I~iwd~~~~-----------------------~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~ 399 (685)
..|- -+++|+.+-.|++|.++.. ..+..+++|.. +..|.|+|...+|++.+...
T Consensus 302 ~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~- 379 (609)
T KOG4227|consen 302 IDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVEN- 379 (609)
T ss_pred ecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhh-
Confidence 7654 4999999999999998632 12334556655 88999999999999998885
Q ss_pred eEEEEEc
Q 005656 400 GVYLWVN 406 (685)
Q Consensus 400 ~I~lW~~ 406 (685)
.++||+.
T Consensus 380 ~~KlWS~ 386 (609)
T KOG4227|consen 380 SFKLWSD 386 (609)
T ss_pred heecccc
Confidence 9999974
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=2.3e-18 Score=179.85 Aligned_cols=285 Identities=14% Similarity=0.171 Sum_probs=202.9
Q ss_pred CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCC--CceeEecccCCCCCeEEEEe
Q 005656 25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPPLCIRFY 101 (685)
Q Consensus 25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~--~~~~~~~~~h~~~v~~i~~~ 101 (685)
+.+.||++.......... .-...|+|+.|+|.. .+++.|..+|.|.+||+..+... ...-.....|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 579999998873322222 467899999999955 57788888999999999876542 22223345799999999998
Q ss_pred cCC--CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656 102 ANG--RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 179 (685)
Q Consensus 102 ~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (685)
.+- .-+++++.||.|+.|+++.-.............
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~------------------------------------------ 338 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK------------------------------------------ 338 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhccccccc------------------------------------------
Confidence 763 459999999999999875443322111000000
Q ss_pred EEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEE
Q 005656 180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 258 (685)
Q Consensus 180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l 258 (685)
+ ..........++++.|.+ +-+.+++|+..|.|+.-+-+..................|.++|+++
T Consensus 339 -------------~-~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v 404 (555)
T KOG1587|consen 339 -------------H-KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV 404 (555)
T ss_pred -------------c-cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence 0 000013345678889888 5578999999999988544433332211111111233789999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECC-CCceEEEeecC-CceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC--eeEEEEec
Q 005656 259 ACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL--RMVRKFEG 333 (685)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~-~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~--~~~~~~~~ 333 (685)
.++|-+..++..+.|.++++|... ...++..+... ..+++++|||-.. .++++..||.|.+||+... .++.+..-
T Consensus 405 ~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~ 484 (555)
T KOG1587|consen 405 SRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV 484 (555)
T ss_pred ecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc
Confidence 999988666655559999999987 66666665554 5599999999765 8888888999999999753 55666665
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 334 h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
+....+.+.|+++|+.|+.|...|++.+|++..
T Consensus 485 ~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 485 CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 666778888999999999999999999999864
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.2e-17 Score=174.26 Aligned_cols=373 Identities=16% Similarity=0.217 Sum_probs=241.9
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc---EEEEecCCCcEEEEEecCCCCCCcee
Q 005656 9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTTDGDPRLL 85 (685)
Q Consensus 9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~---~l~s~s~D~~v~iWd~~~~~~~~~~~ 85 (685)
.||+|++ .++. ..+..|.||...++.++..+. +|..+++++.+.|... ++++++.||.|++||+..+ .++
T Consensus 23 vfSnD~k-~l~~-~~~~~V~VyS~~Tg~~i~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~----~Ll 95 (792)
T KOG1963|consen 23 VFSNDAK-FLFL-CTGNFVKVYSTATGECITSLE-DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG----ELL 95 (792)
T ss_pred ccccCCc-EEEE-eeCCEEEEEecchHhhhhhcc-cccCccceeeecCCCccceEEEEEecCccEEEecCCCc----EEE
Confidence 5899998 4443 345789999999999999888 9999999999998654 7789999999999998776 666
Q ss_pred EecccCCCCCeEEEEecC---CCEEEEEe-CCC-ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 86 RFRSGHSAPPLCIRFYAN---GRHILSAG-QDR-AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 86 ~~~~~h~~~v~~i~~~~~---~~~l~s~s-~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+++.. ..++..+.+.|. -..++..+ .|. .+.........+...+...........+. .....+..+.+..
T Consensus 96 kt~~~-~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~---~~~~~~~~I~~~~- 170 (792)
T KOG1963|consen 96 KTFDN-NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFL---KEHQEPKSIVDNN- 170 (792)
T ss_pred EEEec-CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhh---hhhcCCccEEEcC-
Confidence 66533 344555555331 11122122 111 11111111111111110000000000000 0000011111111
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC-Cccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS-GISRGS 239 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~-~~~~~~ 239 (685)
.+ .+..-.-...+.+|.................|...+++.++||+++++++|..+|.|.+|.--. .....+
T Consensus 171 -----~g--e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 171 -----SG--EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred -----Cc--eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 01 1122222344566666653311111111224555689999999999999999999999996433 111111
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
.....-|...|.+++|+++|.+|++||..|.+.+|.+.+++....-+.+++|..+.++||+.+.++...|+.|.+
T Consensus 244 -----~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 244 -----CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred -----ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 112237889999999999999999999999999999999985555556799999999999999999999999999
Q ss_pred EEcCCCeeEEEEecC-----------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee------------c
Q 005656 320 FDVVALRMVRKFEGH-----------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV------------D 376 (685)
Q Consensus 320 ~d~~~~~~~~~~~~h-----------~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~------------~ 376 (685)
....+.....++.|- .+-.+.++++|.-+.++-.+..|.|.+||+.+.+.+..+.. +
T Consensus 319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~ 398 (792)
T KOG1963|consen 319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQ 398 (792)
T ss_pred EeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeE
Confidence 988766555444432 33467889999777888889999999999998877765532 2
Q ss_pred cceEEEEEcCCCCeEEEEEe--------C-CCeEEEEE
Q 005656 377 VSITALSLSPNMDVLATAHV--------D-QNGVYLWV 405 (685)
Q Consensus 377 ~~v~~v~~spdg~~Lat~~~--------d-~~~I~lW~ 405 (685)
-.+++++.+-.|.+++|.-. | ...+++|.
T Consensus 399 v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 399 VGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred EeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 23888999999999999743 2 23678895
No 186
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.8e-19 Score=192.74 Aligned_cols=247 Identities=14% Similarity=0.212 Sum_probs=194.0
Q ss_pred cEEEEEEccCCCC---EEEEEeCCCcEEEEeCCCC------eeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEE
Q 005656 4 AVTALAFSSDGQP---LLASGASSGVISIWNLEKR------RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMW 73 (685)
Q Consensus 4 ~V~~l~fspdg~~---~latg~~dg~I~vwd~~~~------~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iW 73 (685)
.-+.++|.+.|.. +||.|..||.|.+||...- ..+.+.. .|.+.|..+.|++.+. +||+|+.||.|.||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 4578899988874 6999999999999998652 2345555 8999999999999776 99999999999999
Q ss_pred EecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656 74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 152 (685)
Q Consensus 74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (685)
|+...+.....- -......|.+++|+.. ...|++++.+|.+.|||++..+.+-.+...
T Consensus 145 Dlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~------------------- 203 (1049)
T KOG0307|consen 145 DLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT------------------- 203 (1049)
T ss_pred ccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-------------------
Confidence 998754322221 1234678999999875 567788899999999999877654444210
Q ss_pred ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCC---cEEE
Q 005656 153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGG---WIER 228 (685)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg---~i~~ 228 (685)
.....+..++|+|++ ..+++++.|. .|.+
T Consensus 204 -----------------------------------------------~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql 236 (1049)
T KOG0307|consen 204 -----------------------------------------------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL 236 (1049)
T ss_pred -----------------------------------------------CCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence 223457889999976 4556665543 6999
Q ss_pred EECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCC
Q 005656 229 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG 306 (685)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~ 306 (685)
||++.-...... ..+|...|.++.|++.+ +++++++.|+.|.+|+.++++.+..+... ..+..+.|+|..-
T Consensus 237 WDlR~assP~k~-------~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 237 WDLRFASSPLKI-------LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred ecccccCCchhh-------hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCc
Confidence 998765433222 23999999999999977 88999999999999999999999988764 7899999999877
Q ss_pred -EEEEEeCCCeEEEEEcCCCe
Q 005656 307 -LLATVADDLVIRLFDVVALR 326 (685)
Q Consensus 307 -~l~~~~~dg~I~i~d~~~~~ 326 (685)
.+++++-||.|.||.+.+..
T Consensus 310 ~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 310 SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhheeccceeeeeeecCC
Confidence 89999999999999987653
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.4e-17 Score=147.91 Aligned_cols=286 Identities=15% Similarity=0.163 Sum_probs=206.2
Q ss_pred CeeEEEEeCCCcEEEEecCCCcEEEEEecCCC------CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656 48 AIISLHFFANEPVLMSASADNSIKMWIFDTTD------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121 (685)
Q Consensus 48 ~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~ 121 (685)
.|.+-+|+|.+++|+.|+.+|+|.+..+..-. .....+....+|.++|..++|+. .+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 46777899999999999999999999886431 11233444579999999999983 3777776 599999987
Q ss_pred ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 201 (685)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 201 (685)
......... -.+|......... ...
T Consensus 89 ~E~~es~~~-------------------------------------------------K~lwe~~~P~~~~------~~e 113 (325)
T KOG0649|consen 89 NEEEESLAT-------------------------------------------------KRLWEVKIPMQVD------AVE 113 (325)
T ss_pred hhhhhhccc-------------------------------------------------hhhhhhcCccccC------ccc
Confidence 544321110 1122211110000 022
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
-..|.++.+.|..+-++.++.|+.++-||+.+|+....+. +|+..|.++.--..+..+++|+.||++++||.
T Consensus 114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~ 185 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDT 185 (325)
T ss_pred CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--------CCcceeeeeeecccCcceeecCCCccEEEEec
Confidence 3468899999988888888899999999999999998886 99999999998556667999999999999999
Q ss_pred CCCceEEEeecC-----------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 005656 282 KGRDLKSRWEVG-----------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 350 (685)
Q Consensus 282 ~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l 350 (685)
++++.+..+..- ..|.++ .-+..++++|+ ...+.+|.+++.++...|. ..+++..+.| +.+.+
T Consensus 186 kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F--~~d~v 259 (325)
T KOG0649|consen 186 KTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDF--VDDCV 259 (325)
T ss_pred cccceeEEeccccChhhcCcccCceeEEE--eccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeee--ecceE
Confidence 999988776532 223333 34466777765 4579999999998888776 5567888889 45578
Q ss_pred EEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 351 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 351 ~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
++++..+.|.-|.+. |.+...+...++ +++..|+..--.+++.....+.+.|+.+
T Consensus 260 l~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~~ 315 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILKD 315 (325)
T ss_pred EEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeeec
Confidence 888888889999864 555555555554 7777776654444444445457888754
No 188
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=156.34 Aligned_cols=297 Identities=18% Similarity=0.237 Sum_probs=196.3
Q ss_pred eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc-cCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656 37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRA 115 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg~ 115 (685)
+...++ +|.+.|+++.|-.+++ |.+|..-|.|++|++.+. +.+..+. .|...|+.+.-.|+ ..+.+-+.|+.
T Consensus 6 P~fvLR-p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~----r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 6 PFFVLR-PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE----RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred CeeEec-cccchheehhhccchh-hhcccccceEEEEEeecC----ccchhhhhhccceeeceeecCC-cchhhcCCCce
Confidence 345666 8999999999998875 899999999999999887 4444445 57788999988887 57899999999
Q ss_pred eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656 116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 195 (685)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 195 (685)
+.+|++..+.....-+... .. +-+|. +.+.
T Consensus 79 L~lw~ia~s~~i~i~Si~~------------ns---------------------lgFCr--------fSl~--------- 108 (323)
T KOG0322|consen 79 LILWTIAYSAFISIHSIVV------------NS---------------------LGFCR--------FSLV--------- 108 (323)
T ss_pred EEEEEccCcceEEEeeeec------------cc---------------------ccccc--------ceec---------
Confidence 9999987644332211000 00 00000 0000
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CC--EEEEEEC
Q 005656 196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NT--LMISAGY 272 (685)
Q Consensus 196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~--~l~s~s~ 272 (685)
.......-..+.|+.. + ..+++-|......+..... ...+..+.+.+..+... +. +++.|-.
T Consensus 109 ----~~~k~~eqll~yp~rg-----s--de~h~~D~g~~tqv~i~dd----~~~~Klgsvmc~~~~~~c~s~~lllaGyE 173 (323)
T KOG0322|consen 109 ----KKPKNSEQLLEYPSRG-----S--DETHKQDGGDTTQVQIADD----SERSKLGSVMCQDKDHACGSTFLLLAGYE 173 (323)
T ss_pred ----cCCCcchhheecCCcc-----c--chhhhhccCccceeEccCc----hhccccCceeeeeccccccceEEEEEecc
Confidence 0000000111111100 0 0011122111111111110 11255677888775443 32 4566678
Q ss_pred CCeEEEEECCCCceEEEe-----------ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC--ee--EEEEecCCCC
Q 005656 273 HGDIKVWDFKGRDLKSRW-----------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--RM--VRKFEGHTDR 337 (685)
Q Consensus 273 dg~i~iwd~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~--~~~~~~h~~~ 337 (685)
+|.+.+||+.++..+..+ .+..++.++.|.+.-..=++|+.+..+..|.+... .+ -..+.-.+-.
T Consensus 174 sghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpG 253 (323)
T KOG0322|consen 174 SGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG 253 (323)
T ss_pred CCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCC
Confidence 999999999987433322 23478899999877666677888888889887643 21 1222223345
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
|..+..-||++.+||++.|+.||||+.++..++..++.|+. |++++|+|+...+|+++.|+ .|.+|++
T Consensus 254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~-rISLWkL 322 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA-RISLWKL 322 (323)
T ss_pred ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc-eEEeeec
Confidence 88899999999999999999999999999999999997776 99999999999999999998 9999974
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=186.51 Aligned_cols=281 Identities=19% Similarity=0.271 Sum_probs=220.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|...|.|+.|...|. ++++|+.|..++||..+++.+....+ ||.+.|+.++.+.+..+++++|.|..|++|.+..+
T Consensus 189 H~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~-- 264 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG-- 264 (1113)
T ss_pred hhhheeeeeeccccc-eEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCC--
Confidence 778999999999998 99999999999999999999999999 99999999999999999999999999999988877
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
.++..+.||.+.|++|+|+|-. +.+.||++++||.+-.... +.
T Consensus 265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~--y~----------------------------- 307 (1113)
T KOG0644|consen 265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI--YV----------------------------- 307 (1113)
T ss_pred --chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc--cC-----------------------------
Confidence 7788889999999999999964 7788999999998611100 00
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC-PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 239 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~ 239 (685)
..+. .....-+.++.+-..+.-+++|+.++.-..|.+..-.
T Consensus 308 ----------------------------------prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---- 349 (1113)
T KOG0644|consen 308 ----------------------------------PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---- 349 (1113)
T ss_pred ----------------------------------CCCCCcccccceeeeeccccccccccccCCcccccchhhHhh----
Confidence 0000 0223456677777788889999999887777554221
Q ss_pred cccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCC-EEEEEeCCCe
Q 005656 240 YLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG-LLATVADDLV 316 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~-~l~~~~~dg~ 316 (685)
.+...+.-+..+.+ +.+.+++-.+-.+.+|++.++.+.+....+ ..+..+.++|-+. ...+++.||.
T Consensus 350 ----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs 419 (1113)
T KOG0644|consen 350 ----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS 419 (1113)
T ss_pred ----------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence 22222222222222 245667777888999999999888766654 7888899999776 4557889999
Q ss_pred EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
..|||+-.|.+++...-..+.+.+.+||+||..++....-|.++|.....++..
T Consensus 420 t~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 420 TIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred eEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 999999999877765533566778899999999998888899999987665543
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=186.47 Aligned_cols=281 Identities=17% Similarity=0.268 Sum_probs=219.5
Q ss_pred eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656 38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 117 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~ 117 (685)
+..+. +|..+|+|+.|...|.++++|+.|..++||..++. .++....||.+.|+.++.+.+...+++++.|..|+
T Consensus 183 ikrLl-gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~----~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 183 IKRLL-GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA----RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHH-hhhhheeeeeeccccceEeecCccceeeeeeccch----hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 34455 89999999999999999999999999999998877 88899999999999999999999999999999999
Q ss_pred EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656 118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 197 (685)
Q Consensus 118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 197 (685)
+|.+.++..+..+.
T Consensus 258 vWrl~~~~pvsvLr------------------------------------------------------------------ 271 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLR------------------------------------------------------------------ 271 (1113)
T ss_pred EEecCCCchHHHHh------------------------------------------------------------------
Confidence 99998876554432
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656 198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 277 (685)
Q Consensus 198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~ 277 (685)
+|.+.|++++|+|-. +.+.||++++||.+-. .+ .+.. .........-+.++.+...+..+.|++.|+.-.
T Consensus 272 --ghtgavtaiafsP~~----sss~dgt~~~wd~r~~-~~-~y~p--rp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 272 --GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE-PR-IYVP--RPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred --ccccceeeeccCccc----cCCCCCceEecccccc-cc-ccCC--CCCCcccccceeeeeccccccccccccCCcccc
Confidence 789999999999965 7788999999998711 11 1111 111113345677788888888999999999988
Q ss_pred EEECCCCceEEEeecCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEeC
Q 005656 278 VWDFKGRDLKSRWEVGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGM 355 (685)
Q Consensus 278 iwd~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~ 355 (685)
.|.+....... ..+.-+..+.+ +.+.+++-.+..+.+|++.+|...+.+.+|...+..+.++|-+ +...+++.
T Consensus 342 n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 342 NHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred cchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence 88765321110 00111111112 2466677778899999999999999999999999999999955 45568999
Q ss_pred CCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 356 DGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 356 Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
||...|||+-.|.+++.+. .+..+....||+||..++....-| .++|..
T Consensus 417 dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hg-ql~i~g 466 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHG-QLYILG 466 (1113)
T ss_pred CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCC-ceEEec
Confidence 9999999999998887765 455688899999999888876554 788874
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=163.78 Aligned_cols=263 Identities=19% Similarity=0.250 Sum_probs=187.2
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCee-EEEEeC-------CCcEEEEecCCCcEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII-SLHFFA-------NEPVLMSASADNSIKM 72 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~sp-------~~~~l~s~s~D~~v~i 72 (685)
|...|.|+.|+.... ++.++ .|..+.+|.-.+......+. -...-|. .+..-+ ....++.++.||.+.+
T Consensus 13 ~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~~-~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVAK-LPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred cceeEEeecccccce-EEEec-cCceEEEeecccchhhhhhh-CCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 456788999998877 55554 56666666544433222222 1111111 111111 2237888889999888
Q ss_pred EEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656 73 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 152 (685)
Q Consensus 73 Wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (685)
-+-.. +.-+....|.+.+.+-.|+|||.-|+++|.||.|++|+-. +-....+
T Consensus 90 l~k~~-----rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl---------------------- 141 (737)
T KOG1524|consen 90 LNKSA-----RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTV---------------------- 141 (737)
T ss_pred ecccc-----hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHH----------------------
Confidence 74322 5666778999999999999999999999999999999742 2111111
Q ss_pred ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 005656 153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 232 (685)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~ 232 (685)
.....+|.|++|.|+.+.++.+ ..|.+.+-.++
T Consensus 142 ----------------------------------------------~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~ 174 (737)
T KOG1524|consen 142 ----------------------------------------------VQNEESIRCARWAPNSNSIVFC-QGGHISIKPLA 174 (737)
T ss_pred ----------------------------------------------hhcCceeEEEEECCCCCceEEe-cCCeEEEeecc
Confidence 0346789999999998876654 44567776666
Q ss_pred CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEe
Q 005656 233 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA 312 (685)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 312 (685)
......... +|.+-|.++.|++.+..+++||.|-..++||-....+...-.+..+|++++|.|+ ..+++++
T Consensus 175 ~n~k~i~Wk--------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 175 ANSKIIRWR--------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred cccceeEEe--------ccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeee
Confidence 554444333 9999999999999999999999999999999887777767777799999999999 6666665
Q ss_pred CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656 313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 313 ~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw 362 (685)
.+ +.+ --+...+.|..++||+||..++.|...|.+.+=
T Consensus 246 ~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 246 YN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 32 333 112356789999999999999999988876553
No 192
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.78 E-value=2.9e-16 Score=160.10 Aligned_cols=315 Identities=12% Similarity=0.093 Sum_probs=208.3
Q ss_pred EEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeE
Q 005656 18 LASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 97 (685)
Q Consensus 18 latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~ 97 (685)
+++-..+|.|.|.|..+.+.+..+.. ....-..+.|+|||+++++++.||.|.++|+.+. +.+..... .....+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~-~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~----~~v~~i~~-G~~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPT-GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG----KVVATIKV-GGNPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE--STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS----SEEEEEE--SSEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcC-CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc----cEEEEEec-CCCcce
Confidence 34556789999999999999999983 3333455789999999999999999999999887 66666544 334688
Q ss_pred EEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcC
Q 005656 98 IRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 176 (685)
Q Consensus 98 i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (685)
+++++||+++++++ .++.+.++|..+.+..+.+......
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~---------------------------------------- 122 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP---------------------------------------- 122 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-----------------------------------------
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeeccccccc----------------------------------------
Confidence 99999999999776 5899999999988877776432110
Q ss_pred CceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCE
Q 005656 177 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 255 (685)
Q Consensus 177 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v 255 (685)
.......+.++..+|.+..+++. -..+.|.+.|.........-. .......
T Consensus 123 ---------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-------i~~g~~~ 174 (369)
T PF02239_consen 123 ---------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-------IKVGRFP 174 (369)
T ss_dssp ---------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-------EE--TTE
T ss_pred ---------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee-------ecccccc
Confidence 00124567778888888855554 556899999987653322110 0233456
Q ss_pred EEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC-----CceeEEEEeecC----------CEEEEEeCCCeEEE
Q 005656 256 VGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVN----------GLLATVADDLVIRL 319 (685)
Q Consensus 256 ~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~~~~~----------~~l~~~~~dg~I~i 319 (685)
....|+|++++++.+. .+..|-++|..+++....+... .+...+ .+|.. ...++.-....+.+
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCcccc
Confidence 7889999999877654 6679999999998887766432 222222 22322 22222222345667
Q ss_pred EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE----eCCCcEEEEEcCCCceeeEEeeccc--eEEEEEcCCCCeEEE
Q 005656 320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS----GMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLAT 393 (685)
Q Consensus 320 ~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~----s~Dg~I~iwd~~~~~~i~~~~~~~~--v~~v~~spdg~~Lat 393 (685)
||..+.+.++++....+. ..+..+|+++++.+. ...++|.++|..+.+.+..+..... +..+.|++||+.+..
T Consensus 254 ~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~v 332 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWV 332 (369)
T ss_dssp STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred chhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEE
Confidence 899999999999977666 788899999999988 4558899999999988888765444 999999999999999
Q ss_pred EEeCCC-eEEEEEcCC
Q 005656 394 AHVDQN-GVYLWVNRC 408 (685)
Q Consensus 394 ~~~d~~-~I~lW~~~~ 408 (685)
+..+++ .|.+||...
T Consensus 333 S~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 333 SVWDGNGAIVVYDAKT 348 (369)
T ss_dssp EEE--TTEEEEEETTT
T ss_pred EEecCCCEEEEEECCC
Confidence 888877 899998654
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.8e-16 Score=138.83 Aligned_cols=279 Identities=14% Similarity=0.198 Sum_probs=199.4
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCC---------Cee-eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEK---------RRL-QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 74 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~---------~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd 74 (685)
|.+-+++|.++ +|++|..+|.|.+..+++ ++. +...+ +|+++|+.++|. ..+|++++ ||.|+-|.
T Consensus 13 vf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq-ahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 13 VFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ-AHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeecc-ccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 44567999999 999999999999998863 222 33334 999999999998 44777775 59999998
Q ss_pred ecCCCCC---CceeEe-cc-----cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 75 FDTTDGD---PRLLRF-RS-----GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 75 ~~~~~~~---~~~~~~-~~-----~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
+...... .++... .. ..-..|+++...|..+-++.++.|+.+.-||+++++..+++.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-------------- 153 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-------------- 153 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--------------
Confidence 7654221 011110 11 123468899999988888888899999999999998877775
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW 225 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 225 (685)
+|...+.++..-.....+++|+.||+
T Consensus 154 ------------------------------------------------------GHtDYvH~vv~R~~~~qilsG~EDGt 179 (325)
T KOG0649|consen 154 ------------------------------------------------------GHTDYVHSVVGRNANGQILSGAEDGT 179 (325)
T ss_pred ------------------------------------------------------CCcceeeeeeecccCcceeecCCCcc
Confidence 78889999998777778999999999
Q ss_pred EEEEECCCCccccccccccccc-cCCCC-cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEee
Q 005656 226 IERFNLQSGISRGSYLDMSERS-NYAHN-GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 303 (685)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~~-~~~h~-~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~ 303 (685)
+++||.+++++...+....... ...|. ..|-+++.+ ..+++.|+ ...+.+|.++..+....+..++++..+.|.
T Consensus 180 vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~- 255 (325)
T KOG0649|consen 180 VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFV- 255 (325)
T ss_pred EEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEecccceeEeeee-
Confidence 9999999999887765332211 12333 346677654 44666554 578999999999999999999999999987
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 005656 304 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIW 362 (685)
Q Consensus 304 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spd-g~~l~s~s~Dg~I~iw 362 (685)
...+++++..+.|.-|.+. |..-..........+...|+.. -++|-.++..+.+.|+
T Consensus 256 -~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 256 -DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred -cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 4577778877888888764 3333333333333444555332 2445555666666665
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=2.7e-17 Score=149.68 Aligned_cols=272 Identities=16% Similarity=0.237 Sum_probs=197.2
Q ss_pred CCCcEEEEeCCC--CeeeEEeecccccCeeEEEEeCCC-cEEEEecCC-------CcEEEEEecCCCCC-----CceeEe
Q 005656 23 SSGVISIWNLEK--RRLQSVIREAHDNAIISLHFFANE-PVLMSASAD-------NSIKMWIFDTTDGD-----PRLLRF 87 (685)
Q Consensus 23 ~dg~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D-------~~v~iWd~~~~~~~-----~~~~~~ 87 (685)
.|+.|.+.+++. +.+.......|.+.|..++-+|-. ++|+|+-.+ ..+.||.+...-+. ..++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 567788777655 334333333788999999999955 466665442 24679988765332 233333
Q ss_pred cc-cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce-eeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656 88 RS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 165 (685)
Q Consensus 88 ~~-~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (685)
+. .+-+.|.|+.|.|++..+++.. |..|.+|++..+.. ...+...
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss-------------------------------- 164 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSS-------------------------------- 164 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccc--------------------------------
Confidence 33 4566899999999999988876 88899999987654 2222100
Q ss_pred CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc--CCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656 166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
....+....++-+|+| +|+.+++ ..++++..||+++......+..
T Consensus 165 -------------------------------~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~d- 211 (370)
T KOG1007|consen 165 -------------------------------ESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIED- 211 (370)
T ss_pred -------------------------------ccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhh-
Confidence 0002345567778888 5665554 5678999999998877776654
Q ss_pred cccccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCC-ceEEEeecC-CceeEEEEeecCC-EEEEEeCCCeEEE
Q 005656 244 SERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNG-LLATVADDLVIRL 319 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~~~~~~-~l~~~~~dg~I~i 319 (685)
+|...|+.+.|+|+.+ +|++|+.||.|++||.+.. .++..+..+ ..+.++.|+|.-. ++++|+.|..|.+
T Consensus 212 ------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 212 ------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNL 285 (370)
T ss_pred ------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEE
Confidence 8999999999999875 6789999999999999854 456666554 7899999999754 8889999999999
Q ss_pred EEcCC-----------------------------CeeEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCC
Q 005656 320 FDVVA-----------------------------LRMVRKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVIL 366 (685)
Q Consensus 320 ~d~~~-----------------------------~~~~~~~~~h~~~I~~l~~spdg~~l-~s~s~Dg~I~iwd~~~ 366 (685)
|...+ ...+.++..|...|++++||.-..|+ |+-|.||.+.|=.++.
T Consensus 286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 86432 01244677899999999999866654 5779999998877654
No 195
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.5e-18 Score=167.17 Aligned_cols=301 Identities=15% Similarity=0.223 Sum_probs=228.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC--CcEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|.|.|+.|.|...|. +|++|+.|..|.+||+..+.....+..+|...|....|.|. .+.+++++.||.|++=.+...
T Consensus 141 H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 889999999999999 99999999999999999999999988899999999999984 458999999999999877654
Q ss_pred CCCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
.. ..-...+..|.++|..++.-|+. .-|++++.|+.+.-+|++.+.....+.
T Consensus 220 ~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-------------------------- 272 (559)
T KOG1334|consen 220 GY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-------------------------- 272 (559)
T ss_pred cc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--------------------------
Confidence 32 22234556899999999999974 568899999999999987765433321
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCcc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGIS 236 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~ 236 (685)
|...+. ...-....++..|.. +.+++|+.+-.+++||.+.-..
T Consensus 273 ---------------cr~~~~---------------------~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~ 316 (559)
T KOG1334|consen 273 ---------------CREADE---------------------KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDK 316 (559)
T ss_pred ---------------eeccCC---------------------ccceeeeeEecCCCCccccccCChhhhhhhhcccchhh
Confidence 111000 111245677888855 4889999999999999875332
Q ss_pred c------cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC--C----------ceEEE-eecC---C
Q 005656 237 R------GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--R----------DLKSR-WEVG---C 294 (685)
Q Consensus 237 ~------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~--~----------~~~~~-~~~~---~ 294 (685)
. ..+...... ......|+|++++.++.-+.++-.|-.|+++.-.- | ..... +..+ .
T Consensus 317 e~~n~~~~~f~p~hl~--~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~ 394 (559)
T KOG1334|consen 317 EENNGVLDKFCPHHLV--EDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSR 394 (559)
T ss_pred ccccchhhhcCCcccc--ccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccc
Confidence 2 222110000 02345799999998887777777888899995332 2 11111 3333 3
Q ss_pred ceeEEEE-eecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656 295 SLVKIVY-HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 295 ~i~~~~~-~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~ 367 (685)
.|..+-| -|...++++|++-|.|.||+-.+++.++.+.+-..-|+|+.-+|--..||+++-|..|+||.-.+.
T Consensus 395 TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 395 TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 3555554 577889999999999999999999999999987779999999999999999999999999986443
No 196
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.7e-17 Score=157.29 Aligned_cols=225 Identities=13% Similarity=0.188 Sum_probs=170.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKM 72 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~-------~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~i 72 (685)
|+++|..++|+|-....+|+|+.|.+|.||.+..+ +.+..+. +|...|..++|+|.- +.|+|++.|++|.+
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhccCCceEEE
Confidence 89999999999988779999999999999998764 3355666 999999999999964 58999999999999
Q ss_pred EEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656 73 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 152 (685)
Q Consensus 73 Wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (685)
|++.++ ..+..+. |...|.++.|+.||.+|++++.|..|||||.++++.+.+-..
T Consensus 159 Wnv~tg----eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~-------------------- 213 (472)
T KOG0303|consen 159 WNVGTG----EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA-------------------- 213 (472)
T ss_pred EeccCC----ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc--------------------
Confidence 999988 4444554 999999999999999999999999999999998876655411
Q ss_pred ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe---cCCcEEEE
Q 005656 153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT---AGGWIERF 229 (685)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~---~dg~i~~~ 229 (685)
........+.|-.+|..+.+|. ++..+.+|
T Consensus 214 -----------------------------------------------heG~k~~Raifl~~g~i~tTGfsr~seRq~aLw 246 (472)
T KOG0303|consen 214 -----------------------------------------------HEGAKPARAIFLASGKIFTTGFSRMSERQIALW 246 (472)
T ss_pred -----------------------------------------------ccCCCcceeEEeccCceeeeccccccccceecc
Confidence 1122334455666777666664 35688899
Q ss_pred ECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCce----EEEeecCCceeEEEEeec
Q 005656 230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDL----KSRWEVGCSLVKIVYHRV 304 (685)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~----~~~~~~~~~i~~~~~~~~ 304 (685)
|..+-.....+. ....+..|.---|+++...++.+| .|+.|+.|.+....+ +.++....+-..+.|-|.
T Consensus 247 dp~nl~eP~~~~------elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 247 DPNNLEEPIALQ------ELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred CcccccCcceeE------EeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 877654433321 113456677778899988887766 799999999987653 333444455555555554
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.6e-18 Score=167.04 Aligned_cols=294 Identities=19% Similarity=0.333 Sum_probs=228.6
Q ss_pred eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCc
Q 005656 38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRA 115 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~ 115 (685)
...+. .|.+.|..+.|+..|..|++||.|..|.+||+.... ..+....||...|....|.|. ...+++++.||.
T Consensus 135 ~~kL~-~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~---~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 135 QKKLN-KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS---PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhccc-CCCCccceeeecccCceeeccCccceEEeehhhccC---cccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 34454 899999999999999999999999999999998775 556777899999999999985 568999999999
Q ss_pred eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656 116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 195 (685)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 195 (685)
+++=.+.........
T Consensus 211 vr~s~i~~t~~~e~t----------------------------------------------------------------- 225 (559)
T KOG1334|consen 211 VRVSEILETGYVENT----------------------------------------------------------------- 225 (559)
T ss_pred eeeeeeccccceecc-----------------------------------------------------------------
Confidence 998766433221100
Q ss_pred cCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCc---CEEEEEEcCCCC-EEEEE
Q 005656 196 RPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG---EVVGVACDSTNT-LMISA 270 (685)
Q Consensus 196 ~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~-~l~s~ 270 (685)
.....|.++|..+++-|+. ..+.+++.|+.+.-+|++.+.....+. ....+.. ....++.+|.+. .++++
T Consensus 226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-----cr~~~~~~~v~L~~Ia~~P~nt~~faVg 300 (559)
T KOG1334|consen 226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-----CREADEKERVGLYTIAVDPRNTNEFAVG 300 (559)
T ss_pred eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-----eeccCCccceeeeeEecCCCCccccccC
Confidence 0011667888888888865 557888999999999999887665553 1113333 678899999775 78999
Q ss_pred ECCCeEEEEECCCCceE------EEe-------ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC--C----------
Q 005656 271 GYHGDIKVWDFKGRDLK------SRW-------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA--L---------- 325 (685)
Q Consensus 271 s~dg~i~iwd~~~~~~~------~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~--~---------- 325 (685)
+.|..+++||.+.-... ..+ ..+..|++++|+.++.-|.++..|-.|+++.-.- |
T Consensus 301 G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~ 380 (559)
T KOG1334|consen 301 GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPRE 380 (559)
T ss_pred ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchh
Confidence 99999999998743211 111 2236799999998888777888888999995332 2
Q ss_pred eeEEE-EecCCCC--eEEEE-EcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCe
Q 005656 326 RMVRK-FEGHTDR--ITDFC-FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNG 400 (685)
Q Consensus 326 ~~~~~-~~~h~~~--I~~l~-~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~ 400 (685)
..+.. ++||.+. |..+- |-|...|+++||.-|.|.||+-.+++++..+..... |+|+.=+|--..||+++.|. -
T Consensus 381 ~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~-D 459 (559)
T KOG1334|consen 381 QYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDH-D 459 (559)
T ss_pred hccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCcc-c
Confidence 22333 7888764 66665 467889999999999999999999999999887666 99999999999999999997 8
Q ss_pred EEEEEc
Q 005656 401 VYLWVN 406 (685)
Q Consensus 401 I~lW~~ 406 (685)
|+||..
T Consensus 460 VKIWTP 465 (559)
T KOG1334|consen 460 VKIWTP 465 (559)
T ss_pred eeeecC
Confidence 999973
No 198
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=9.2e-17 Score=148.74 Aligned_cols=335 Identities=15% Similarity=0.188 Sum_probs=198.7
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCC
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
.|..+.|..|..++|.....++.|.+|++...+-...+. .-..++.++.|||||+ +|.+..-|-.|.+|.+.+..
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--- 125 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--- 125 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce---
Confidence 466788999988677777889999999999999888888 6677899999999996 56666779999999998863
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
.. .+.-....+..++|+|||++.+.+++-.....+++... +...+ ....+.+.+. .
T Consensus 126 -~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c-------------~~W~l---l~~f~~dT~D---l--- 181 (447)
T KOG4497|consen 126 -GY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC-------------KAWIL---LKEFKLDTID---L--- 181 (447)
T ss_pred -eE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhh-------------HHHHH---HHhcCCCccc---c---
Confidence 22 22233456789999999999888775311111111000 00000 0000000000 0
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
.-+--..++..+.+|+-.-... +.. -...-.+..+.|+|+++++++|+.|+.+++.|--+-+...
T Consensus 182 ------tgieWsPdg~~laVwd~~Leyk---v~a--Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~---- 246 (447)
T KOG4497|consen 182 ------TGIEWSPDGNWLAVWDNVLEYK---VYA--YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG---- 246 (447)
T ss_pred ------cCceECCCCcEEEEecchhhhe---eee--eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehh----
Confidence 0011222333444444221000 000 0112345666666666666666666666555422111100
Q ss_pred ccccccCC--CCcCEE--------------------EEEEcCCCCEEEEEECCCeEEEEECCC--------CceEEEee-
Q 005656 243 MSERSNYA--HNGEVV--------------------GVACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWE- 291 (685)
Q Consensus 243 ~~~~~~~~--h~~~v~--------------------~l~~~~~~~~l~s~s~dg~i~iwd~~~--------~~~~~~~~- 291 (685)
. |-..+. ++.|.|. |-...+|.... ...+..+.
T Consensus 247 -------eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~---------~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 247 -------EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT---------DLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred -------hhccchhccCchhhhhhhhhcchhhhcccccccCCC---------ccccCccccchhhhhhhhcceeeecccC
Confidence 0 101110 0111110 11111121110 00111111
Q ss_pred ------cCCceeEEEEeecCCEEEEEeCC--CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 292 ------VGCSLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 292 ------~~~~i~~~~~~~~~~~l~~~~~d--g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
....+..++|++|..++++-.+. +.+.+||++..+....+. ...+|....|.|....|+.+.....+++|.
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 12567789999999999887654 589999999877655554 456899999999888888887778899998
Q ss_pred cCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656 364 VILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 364 ~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
......+..-.....|..+.|.-+|.+++..+.|.
T Consensus 390 psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 390 PSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred CCCceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 66544554444445699999999999999999885
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=4.9e-19 Score=170.96 Aligned_cols=230 Identities=18% Similarity=0.261 Sum_probs=192.8
Q ss_pred CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656 93 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 172 (685)
Q Consensus 93 ~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (685)
-.+..+.|+.+|++++.|+.-|.|-.+|..+.....++..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---------------------------------------- 169 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---------------------------------------- 169 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----------------------------------------
Confidence 3567889999999999999999999999999888777632
Q ss_pred EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCC
Q 005656 173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 252 (685)
Q Consensus 173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~ 252 (685)
...|..+.|-.+.++++++- ...+++||-. |.....+ ...
T Consensus 170 -----------------------------~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHCl---------k~~ 209 (545)
T KOG1272|consen 170 -----------------------------METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHCL---------KRH 209 (545)
T ss_pred -----------------------------hhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEeeh---------hhc
Confidence 34466667777777766653 4568888854 4444433 334
Q ss_pred cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEE
Q 005656 253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF 331 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 331 (685)
..|..+.|-|..-+|++++..|.++.-|+.+|+++..+... +.+..+.-+|-+..+-+|..+|+|.+|.....+++..+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 67889999999889999999999999999999999888765 77888999999999999999999999999999999888
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 332 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 332 ~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
-.|.++|.++++.++|+|+||++.|..++|||++....+.++..+.+...+++|..|. ||.+-.+ .|.||.
T Consensus 290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~~~G~--~v~iw~ 360 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LALSYGD--HVQIWK 360 (545)
T ss_pred HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccc-eeeecCC--eeeeeh
Confidence 8999999999999999999999999999999999988888888778899999998763 4444323 899995
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=4.1e-16 Score=147.17 Aligned_cols=174 Identities=19% Similarity=0.261 Sum_probs=141.9
Q ss_pred CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC----CceeEE
Q 005656 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKI 299 (685)
Q Consensus 224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~i~~~ 299 (685)
..+++++.+.+..+..+ .....|.++.++. ++|+++-. ..|+|||+++.+++.++... ..+..+
T Consensus 68 r~Lkv~~~Kk~~~ICe~---------~fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEI---------FFPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCAL 135 (391)
T ss_pred ceEEEEEcccCceEEEE---------ecCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEee
Confidence 45888888877776655 3456788888764 45666654 44999999999999887653 334455
Q ss_pred EEeecCCEEEEEe--CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEcCCCceeeEEeec
Q 005656 300 VYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS-LRIWDVILARQIDAIHVD 376 (685)
Q Consensus 300 ~~~~~~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~-I~iwd~~~~~~i~~~~~~ 376 (685)
.+++.+.++|.-+ ..|.|.+||..+-+.+..+..|.+.+.+++|+++|.+|||+|..|+ ||||.+++|+.+..|+..
T Consensus 136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG 215 (391)
T KOG2110|consen 136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG 215 (391)
T ss_pred ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence 5555556888654 3689999999999999999999999999999999999999999998 899999999999999754
Q ss_pred c---ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656 377 V---SITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 410 (685)
Q Consensus 377 ~---~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~ 410 (685)
. .|.+++|+|++++|++++..+ +|++|.+....
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS~Te-TVHiFKL~~~~ 251 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASSNTE-TVHIFKLEKVS 251 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEecCCC-eEEEEEecccc
Confidence 3 389999999999999999887 99999876544
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=1.3e-16 Score=147.68 Aligned_cols=237 Identities=13% Similarity=0.146 Sum_probs=175.0
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
-.+|+|.+|++|+. .+|++.....|.||...... ..+++. .|...|+++.|+|..+.|++++.|..-.+|....
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~- 86 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS- 86 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCCCCccccccCC-
Confidence 36899999999998 89999988999999887654 567777 8999999999999999999999999999997632
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
++..+....+..|...++++.|+|.++.+++|+..+.|.||-++....--.-
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs---------------------------- 138 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS---------------------------- 138 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh----------------------------
Confidence 3444555556678999999999999999999999999999977544321100
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
+++.+ ...+.|.+++|+|++-.+++|+.|+..++|..--...-.
T Consensus 139 ---------------------------------Khikk---PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vde 182 (361)
T KOG1523|consen 139 ---------------------------------KHIKK---PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDE 182 (361)
T ss_pred ---------------------------------hhhCC---ccccceeeeeccCCcceecccccCcceeEEEEeeecccc
Confidence 01111 456789999999999999999999999998642111000
Q ss_pred ccc--------c--ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEee-cCCceeEEEEeecC
Q 005656 239 SYL--------D--MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWE-VGCSLVKIVYHRVN 305 (685)
Q Consensus 239 ~~~--------~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~ 305 (685)
.-. . ..........+.|.++.|+|+|..|+-.+.|.++.+-|..... ...... ..-+..++.|-.+.
T Consensus 183 kpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 183 KPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred CCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence 000 0 0000111456789999999999999999999999999987654 222221 22455555555443
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.9e-16 Score=167.30 Aligned_cols=233 Identities=10% Similarity=0.036 Sum_probs=162.6
Q ss_pred CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656 67 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLK 143 (685)
Q Consensus 67 D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 143 (685)
+..|.+||.+... ...+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++.....
T Consensus 183 ~~~i~i~d~dg~~-----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~------------- 244 (429)
T PRK01742 183 PYEVRVADYDGFN-----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA------------- 244 (429)
T ss_pred eEEEEEECCCCCC-----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-------------
Confidence 4688899876542 23445678889999999999999987754 36999998765422111
Q ss_pred ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-c
Q 005656 144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-A 222 (685)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~ 222 (685)
........++|+|+|+.++++. .
T Consensus 245 --------------------------------------------------------~~~g~~~~~~wSPDG~~La~~~~~ 268 (429)
T PRK01742 245 --------------------------------------------------------SFRGHNGAPAFSPDGSRLAFASSK 268 (429)
T ss_pred --------------------------------------------------------cCCCccCceeECCCCCEEEEEEec
Confidence 1112233679999999988865 5
Q ss_pred CCcE--EEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-ceEEEeecCCceeE
Q 005656 223 GGWI--ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGR-DLKSRWEVGCSLVK 298 (685)
Q Consensus 223 dg~i--~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~~i~~ 298 (685)
+|.+ ++||+.++...... .+...+....|+|+|+.|+.++ .+|...+|++... .....+.... ..
T Consensus 269 ~g~~~Iy~~d~~~~~~~~lt---------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~ 337 (429)
T PRK01742 269 DGVLNIYVMGANGGTPSQLT---------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YS 337 (429)
T ss_pred CCcEEEEEEECCCCCeEeec---------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CC
Confidence 7765 45577666543221 5566788899999999877655 5788888876532 2222232222 45
Q ss_pred EEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCceeeEEeec
Q 005656 299 IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--ILARQIDAIHVD 376 (685)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~--~~~~~i~~~~~~ 376 (685)
..|+|+|+.++.++.++ +.+||+.+++.......+ ....+.|+|||++|++++.+|.+.+|++ .+|..+..+..+
T Consensus 338 ~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 338 AQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred ccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence 78999999998887765 556999988754332222 3456789999999999999999988886 367788888654
Q ss_pred cc-eEEEEEcCC
Q 005656 377 VS-ITALSLSPN 387 (685)
Q Consensus 377 ~~-v~~v~~spd 387 (685)
.. +..++|||-
T Consensus 415 ~g~~~~p~wsp~ 426 (429)
T PRK01742 415 DGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCcccCCC
Confidence 44 888999984
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.3e-17 Score=158.52 Aligned_cols=200 Identities=22% Similarity=0.261 Sum_probs=154.6
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee
Q 005656 6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 85 (685)
Q Consensus 6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 85 (685)
.+++|+.+|. .|++|+.||.++||++.+...+.... .|.+.|.++.|+|||++|++.+.| ..+||+.+++. .+
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~----~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA----AL 220 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc----hh
Confidence 5799999999 99999999999999998888777776 899999999999999999999999 99999998872 22
Q ss_pred Eec--ccCCCCCeEEEEecCC---CEEE--EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 86 RFR--SGHSAPPLCIRFYANG---RHIL--SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 86 ~~~--~~h~~~v~~i~~~~~~---~~l~--s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
... ..-......+.|+.|+ .+.+ ....-+.|+.|++........+
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l---------------------------- 272 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL---------------------------- 272 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc----------------------------
Confidence 221 2334456677888776 2222 3344567777776432211000
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
.... .......|++++++++|+++++|+.+|.|.+|+..+-+...
T Consensus 273 -------------------------------~~~~----~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~ 317 (398)
T KOG0771|consen 273 -------------------------------RLRK----KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQ 317 (398)
T ss_pred -------------------------------chhh----hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeE
Confidence 0000 00234579999999999999999999999999998887776
Q ss_pred ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 282 (685)
..+. .|...|+++.|+|+.+++++.+.|.+..+..+.
T Consensus 318 ~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 318 YVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eehh-------hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 6543 899999999999999999999988888877665
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.5e-16 Score=149.06 Aligned_cols=192 Identities=21% Similarity=0.276 Sum_probs=153.5
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 005656 206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 285 (685)
Q Consensus 206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (685)
.+++++++|..+++|+.||.+++|+..+........ .|...|.++.|+|||++|++.+.| ..+||+..++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI--------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 789999999999999999999999987776665544 899999999999999999999999 99999999996
Q ss_pred eEEEeec---CCceeEEEEeecC---C--EEEEEeCCCeEEEEEcCCCee-----EEEEecCCCCeEEEEEcCCCCEEEE
Q 005656 286 LKSRWEV---GCSLVKIVYHRVN---G--LLATVADDLVIRLFDVVALRM-----VRKFEGHTDRITDFCFSEDGKWLLS 352 (685)
Q Consensus 286 ~~~~~~~---~~~i~~~~~~~~~---~--~l~~~~~dg~I~i~d~~~~~~-----~~~~~~h~~~I~~l~~spdg~~l~s 352 (685)
.+..... +.....+.|+.++ . +++.....+.|+.||+...+- .++.......|++++.|+||++++.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 6655542 3567788888877 3 333344456777777654322 1112223456999999999999999
Q ss_pred EeCCCcEEEEEcCCCceeeEEe-eccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 353 SGMDGSLRIWDVILARQIDAIH-VDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 353 ~s~Dg~I~iwd~~~~~~i~~~~-~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
|+.||.|-|++..+-++++.++ .|.. |+.+.|+||.+++++.+.+. .+.|....
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~-~~~v~~l~ 354 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN-EAAVTKLA 354 (398)
T ss_pred eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC-ceeEEEEe
Confidence 9999999999999988888776 3433 99999999999999988775 77777543
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=2.3e-15 Score=142.21 Aligned_cols=311 Identities=15% Similarity=0.208 Sum_probs=208.2
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC--CcEEEEEecCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD--NSIKMWIFDTTDG 80 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D--~~v~iWd~~~~~~ 80 (685)
..|..+.|+.|.. +|..|+.|| -++|+.+......... .....|.-+-|+. .++|..+.+ +.+++.++...
T Consensus 6 ~ti~~~~~Nqd~~-~lsvGs~~G-yk~~~~~~~~k~~~~~-~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~-- 78 (391)
T KOG2110|consen 6 PTINFIGFNQDST-LLSVGSKDG-YKIFSCSPFEKCFSKD-TEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK-- 78 (391)
T ss_pred cceeeeeecccee-EEEccCCCc-eeEEecCchHHhhccc-CCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC--
Confidence 3577888999988 999999999 6888877644322221 2233455566664 466655554 34888877655
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
..+... ....+|.++.++.+ .|+++=.+. |.|||+.+.+...++..
T Consensus 79 --~~ICe~-~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t---------------------------- 124 (391)
T KOG2110|consen 79 --TTICEI-FFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIET---------------------------- 124 (391)
T ss_pred --ceEEEE-ecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhc----------------------------
Confidence 222222 34567888888654 666665544 99999988776655531
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE--ecCCcEEEEECCCCcccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG--TAGGWIERFNLQSGISRG 238 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g--~~dg~i~~~d~~~~~~~~ 238 (685)
.+.++..+.++++++.+.+++.- ...|.|.+||..+-+...
T Consensus 125 -------------------------------------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~ 167 (391)
T KOG2110|consen 125 -------------------------------------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN 167 (391)
T ss_pred -------------------------------------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee
Confidence 11345567777777777888874 346999999999988877
Q ss_pred ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe-EEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCC
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD-IKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADD 314 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d 314 (685)
.+. +|.+.+.+++|+++|.+|||++..|+ ||++.+.+|+.+..++.+ ..|.+++|+|++.+|++.+..
T Consensus 168 ~I~--------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 168 TIN--------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred EEE--------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence 765 99999999999999999999999887 799999999999988865 778999999999999999999
Q ss_pred CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCceeeEEeec--c--ceEEEEEcCC
Q 005656 315 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVD--V--SITALSLSPN 387 (685)
Q Consensus 315 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~---Dg~I~iwd~~~~~~i~~~~~~--~--~v~~v~~spd 387 (685)
++|+||.++... ......+-..-.| -+.+.-.... .+.-.+||.. +.....+.. . .+..+.-.+.
T Consensus 240 eTVHiFKL~~~~----~~~~~~p~~~~~~--~~~~sk~~~sylps~V~~~~~~~--R~FAt~~l~~s~~~~~~~l~~~~~ 311 (391)
T KOG2110|consen 240 ETVHIFKLEKVS----NNPPESPTAGTSW--FGKVSKAATSYLPSQVSSVLDQS--RKFATAKLPESGRKNICSLSSIQK 311 (391)
T ss_pred CeEEEEEecccc----cCCCCCCCCCCcc--cchhhhhhhhhcchhhhhhhhhc--cceeEEEccCCCccceEEeeccCC
Confidence 999999987643 1111111000001 0111111100 1122234433 233333322 2 2333333357
Q ss_pred CCeEEEEEeCCCeEEEEEcCC
Q 005656 388 MDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 388 g~~Lat~~~d~~~I~lW~~~~ 408 (685)
...+.+++.|| .++.|....
T Consensus 312 ~~~v~vas~dG-~~y~y~l~~ 331 (391)
T KOG2110|consen 312 IPRVLVASYDG-HLYSYRLPP 331 (391)
T ss_pred CCEEEEEEcCC-eEEEEEcCC
Confidence 88999999998 899997654
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.5e-16 Score=168.09 Aligned_cols=235 Identities=9% Similarity=0.097 Sum_probs=165.6
Q ss_pred CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC---CcEEEEEecCCCCCCceeEecccCCCCCeEEEE
Q 005656 24 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 100 (685)
Q Consensus 24 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D---~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~ 100 (685)
+..|.+||..... ...+. .|...+.+.+|+|||+.|+.++.+ ..|.+||+.++. .+.+....+|. ..++|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--~~~l~~~~g~~---~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--RKVVASFRGHN---GAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--eEEEecCCCcc---CceeE
Confidence 4689999987665 34454 688899999999999999887653 469999886542 23444444443 46899
Q ss_pred ecCCCEEEEEe-CCCceEEEEee--cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCC
Q 005656 101 YANGRHILSAG-QDRAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 177 (685)
Q Consensus 101 ~~~~~~l~s~s-~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (685)
+|||+.|+.++ .+|.+.+|.+. ++.. ..+.
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt---------------------------------------------- 288 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLT---------------------------------------------- 288 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeec----------------------------------------------
Confidence 99999888765 68877776543 2221 1110
Q ss_pred ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656 178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 256 (685)
Q Consensus 178 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (685)
.+...+...+|+|+|+.++..+ .+|...+|++.......... .+.+ .
T Consensus 289 ----------------------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--------~~~~--~ 336 (429)
T PRK01742 289 ----------------------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--------GGRG--Y 336 (429)
T ss_pred ----------------------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------cCCC--C
Confidence 2334567889999999877665 56778888765322111111 2222 3
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcC--CCeeEEEEecC
Q 005656 257 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV--ALRMVRKFEGH 334 (685)
Q Consensus 257 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~--~~~~~~~~~~h 334 (685)
...|+|+|+.++.++.++ +.+||+.++........ .....+.|+|+|++|+.++.++.+.+|++. +++.++.+.+|
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence 578999999998887765 55699988875533222 234567899999999999999988888763 57888889989
Q ss_pred CCCeEEEEEcCC
Q 005656 335 TDRITDFCFSED 346 (685)
Q Consensus 335 ~~~I~~l~~spd 346 (685)
.+.+...+|||-
T Consensus 415 ~g~~~~p~wsp~ 426 (429)
T PRK01742 415 DGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCcccCCC
Confidence 999999999984
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=8.7e-16 Score=164.99 Aligned_cols=269 Identities=16% Similarity=0.244 Sum_probs=190.3
Q ss_pred EeCCCCeeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCC---CceeEecccCCCCCeEEEEecCCC
Q 005656 30 WNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGR 105 (685)
Q Consensus 30 wd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~ 105 (685)
|+. .|.++..+. .|...|..++.++.. .+++|||.||+|++|+...-.+. .+...+......++.++...+.+.
T Consensus 1034 W~p-~G~lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLH-EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc-cceEeehhh-hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 553 466777776 799999999988866 89999999999999998654332 333344444678899999999999
Q ss_pred EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEc
Q 005656 106 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 185 (685)
Q Consensus 106 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 185 (685)
.++.++.||.|++.++......+....
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~----------------------------------------------------- 1138 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVAT----------------------------------------------------- 1138 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceee-----------------------------------------------------
Confidence 999999999999999875321111100
Q ss_pred CccccCceeecCCCCCCCCe-EEEEEcc-CC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC
Q 005656 186 QNFVLGEHILRPCPENPTAV-KACTISA-CG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 262 (685)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v-~~~~~s~-~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 262 (685)
....+.....+.+ ..-++.. .+ ..++.++..+.|..||+++........ .....|.|++++.+|
T Consensus 1139 -------~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk------~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1139 -------QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK------NQLRHGLVTSIVIDP 1205 (1431)
T ss_pred -------eeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh------cCccccceeEEEecC
Confidence 0000000112222 2223332 23 378889999999999998876655543 224568999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCceEEEeecC--CceeEEEEeecC---CEEE-EEe-CCCeEEEEEcCCCeeEEEEecCC
Q 005656 263 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVN---GLLA-TVA-DDLVIRLFDVVALRMVRKFEGHT 335 (685)
Q Consensus 263 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~---~~l~-~~~-~dg~I~i~d~~~~~~~~~~~~h~ 335 (685)
.+.++++|+..|.+.+||++-+.++..+.++ .++..+..+|-. ...+ ++. ..+.|.+|++.+|..-..+...+
T Consensus 1206 ~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~ 1285 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASD 1285 (1431)
T ss_pred CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCC
Confidence 9999999999999999999999998888775 778888777643 3444 444 57899999999997766665331
Q ss_pred C-------------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 336 D-------------------RITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 336 ~-------------------~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
+ .....++..-+..+.+|+.|+.|+.||...
T Consensus 1286 ~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1286 GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred CCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 1 111223333456889999999999999754
No 208
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=8.2e-16 Score=140.11 Aligned_cols=277 Identities=14% Similarity=0.161 Sum_probs=192.0
Q ss_pred CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCC-------CceEEEEeecCceeeEechhhHHH
Q 005656 66 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQD-------RAFRLFSVIQDQQSRELSQRHVAK 137 (685)
Q Consensus 66 ~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~ 137 (685)
.|+.|.+-+++...+. ..-..+..|.+.|+.++-+|-.. .|+++..+ -.+.+|.+...........
T Consensus 38 ~dNqVhll~~d~e~s~-l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t----- 111 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSE-LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST----- 111 (370)
T ss_pred CcceeEEEEecCccch-hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch-----
Confidence 3788999988876443 23345567889999999999654 45554332 1345666543321100000
Q ss_pred HHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE
Q 005656 138 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 217 (685)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 217 (685)
-+.+.......-+.+.|+.|.|++..+
T Consensus 112 -----------------------------------------------------lE~v~~Ldteavg~i~cvew~Pns~kl 138 (370)
T KOG1007|consen 112 -----------------------------------------------------LECVASLDTEAVGKINCVEWEPNSDKL 138 (370)
T ss_pred -----------------------------------------------------hhHhhcCCHHHhCceeeEEEcCCCCee
Confidence 000000011334579999999999988
Q ss_pred EEEecCCcEEEEECCCCccc-cccccccccccCCCCcCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEee--c
Q 005656 218 VLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYHGDIKVWDFKGRDLKSRWE--V 292 (685)
Q Consensus 218 ~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~ 292 (685)
++-. +..|.+|+++.+..+ ..+.. .....|....++-+|+| ++..+++.+ |+++..||+++.+....+. +
T Consensus 139 asm~-dn~i~l~~l~ess~~vaev~s---s~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKIVAEVLS---SESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred EEec-cCceEEEEcccCcchheeecc---cccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhh
Confidence 8876 788999999988774 22221 11224677788899998 567776654 8999999999887766654 3
Q ss_pred CCceeEEEEeecCC-EEEEEeCCCeEEEEEcCC-CeeEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc-
Q 005656 293 GCSLVKIVYHRVNG-LLATVADDLVIRLFDVVA-LRMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDVILAR- 368 (685)
Q Consensus 293 ~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~spd-g~~l~s~s~Dg~I~iwd~~~~~- 368 (685)
...+..+.|+|+.. +|++|++||.|+|||.+. ..++.++.+|...|.++.|+|- .+++++||.|..|.+|...+-.
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 46799999999877 889999999999999985 4678999999999999999994 4678899999999999653211
Q ss_pred ----------------------------eeeEEe-eccceEEEEEcCCCCe-EEEEEeCCCeEEEEEcC
Q 005656 369 ----------------------------QIDAIH-VDVSITALSLSPNMDV-LATAHVDQNGVYLWVNR 407 (685)
Q Consensus 369 ----------------------------~i~~~~-~~~~v~~v~~spdg~~-Lat~~~d~~~I~lW~~~ 407 (685)
.+.++. +...|.+++||.-..+ +|+-+.|| .+.|=..+
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG-RviIs~V~ 361 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG-RVIISSVP 361 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc-eEEeecCC
Confidence 122333 3445999999987665 55667776 66665443
No 209
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=7e-16 Score=161.33 Aligned_cols=274 Identities=14% Similarity=0.128 Sum_probs=194.2
Q ss_pred CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceee--EechhhHHHHHhhccc
Q 005656 68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSR--ELSQRHVAKRARKLKM 144 (685)
Q Consensus 68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~ 144 (685)
+.+.+|++... ..+.... .-..+|+++.|+|. ..+++.|..+|+|.+||++.+.... .+.
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~---~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls------------- 284 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVL---ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS------------- 284 (555)
T ss_pred ceEEEEecCCC-CCceEEE---ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc-------------
Confidence 47899999876 3333322 34678999999995 5677788889999999998765421 110
Q ss_pred cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC--EEEEEec
Q 005656 145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN--FAVLGTA 222 (685)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~g~~ 222 (685)
.....|..+++.+.|..+.. -+++++.
T Consensus 285 ---------------------------------------------------~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 285 ---------------------------------------------------ALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred ---------------------------------------------------cccccCCcCeEEEEEeccCCCCceEEEec
Confidence 00116677888888876544 4899999
Q ss_pred CCcEEEEECCCCccccccccccc----cccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCC---c-----eE-E
Q 005656 223 GGWIERFNLQSGISRGSYLDMSE----RSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR---D-----LK-S 288 (685)
Q Consensus 223 dg~i~~~d~~~~~~~~~~~~~~~----~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~---~-----~~-~ 288 (685)
||.|..|+++.-........... .....-...++++.|.+.. ..++.|+.+|.|.--+-... . .. .
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 99999998775443211110000 0011233568899998754 57889999999887443322 2 11 2
Q ss_pred EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcC-CCeeEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC
Q 005656 289 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 289 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~ 366 (685)
...+.+++.++.++|-+..++..+.|.+++||... ...++..+..+...|++++|||-.. .++++..||.|.+||+..
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred ccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 22345899999999988865555559999999988 7778888888888899999999654 677888899999999964
Q ss_pred C--ceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656 367 A--RQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 410 (685)
Q Consensus 367 ~--~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~ 410 (685)
. .++.......+ .+.+.|++.|+.|++|...| .+++|++...+
T Consensus 474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G-~~~~~~l~~~l 519 (555)
T KOG1587|consen 474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG-TTHILKLSESL 519 (555)
T ss_pred cccCCcccccccccccceeecCCCCcEEEEecCCC-cEEEEEcCchh
Confidence 3 44444444444 77888999999999999887 89999876544
No 210
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=4.8e-16 Score=147.53 Aligned_cols=209 Identities=12% Similarity=0.151 Sum_probs=172.7
Q ss_pred cCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECC
Q 005656 196 RPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYH 273 (685)
Q Consensus 196 ~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~d 273 (685)
....+|..++..++|.| +.+.+++|+.|.+|.+|.+..+.....+. .+.....+|...|--++|+|.- +.|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-cceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 34458999999999999 56778899999999999998776655443 2233455999999999999974 678999999
Q ss_pred CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC-eEEEEEcCCCCEEEE
Q 005656 274 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGKWLLS 352 (685)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~spdg~~l~s 352 (685)
.+|.+||+.+++.+.++.|+..|.++.|+.+|.++++.+.|..|+|||.++++.+..-.+|.+. -..+.|-.+|..+.|
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 9999999999999999999999999999999999999999999999999999999998888764 445668788885555
Q ss_pred Ee---CCCcEEEEEcCCC---ceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 353 SG---MDGSLRIWDVILA---RQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 353 ~s---~Dg~I~iwd~~~~---~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
|- .+..+-+||-..- -....+...+.|.---|.||.++++.++..++.|+.|.
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 42 5778999986543 23345556666888889999999999988777999885
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=1.1e-15 Score=164.32 Aligned_cols=289 Identities=21% Similarity=0.279 Sum_probs=198.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 73 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW 73 (685)
|++.|..++.++....+++||+.||+|++||+..- +...++. .-...+.++.+.+++..+|.++.||.|++.
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 67788888888766349999999999999998641 1222222 246789999999999999999999999999
Q ss_pred EecCCCCCC---ceeEecccCC-CCCeE-EEEecC-C-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656 74 IFDTTDGDP---RLLRFRSGHS-APPLC-IRFYAN-G-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE 146 (685)
Q Consensus 74 d~~~~~~~~---~~~~~~~~h~-~~v~~-i~~~~~-~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (685)
+++...... ...+....+. +.+.+ -+|... + ..++.+..-+.|..||++.......+.
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk--------------- 1190 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK--------------- 1190 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh---------------
Confidence 998732211 1112222222 22332 233322 3 367778888899999987654322221
Q ss_pred cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 005656 147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 226 (685)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 226 (685)
. ....+.|++++++|.++++++|+..|.+
T Consensus 1191 ----------------------------------------~-----------~~~hG~vTSi~idp~~~WlviGts~G~l 1219 (1431)
T KOG1240|consen 1191 ----------------------------------------N-----------QLRHGLVTSIVIDPWCNWLVIGTSRGQL 1219 (1431)
T ss_pred ----------------------------------------c-----------CccccceeEEEecCCceEEEEecCCceE
Confidence 0 1346789999999999999999999999
Q ss_pred EEEECCCCccccccccccccccCCCCcCEEEEEEcCCC---CEEEEEE--CCCeEEEEECCCCceEEEeecCC-------
Q 005656 227 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN---TLMISAG--YHGDIKVWDFKGRDLKSRWEVGC------- 294 (685)
Q Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~------- 294 (685)
.+||++-+..+..... ++..+++.+..+|.. ...++++ ..+.|.+|++.+|.....+....
T Consensus 1220 ~lWDLRF~~~i~sw~~-------P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~ 1292 (1431)
T KOG1240|consen 1220 VLWDLRFRVPILSWEH-------PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSY 1292 (1431)
T ss_pred EEEEeecCceeecccC-------cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhh
Confidence 9999998887766532 556778888777643 3555544 46789999999986655543220
Q ss_pred -------------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE-----------------------------E---
Q 005656 295 -------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV-----------------------------R--- 329 (685)
Q Consensus 295 -------------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~-----------------------------~--- 329 (685)
....+.+...+..+.+|+.|..|+.||....+.. .
T Consensus 1293 ~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i 1372 (1431)
T KOG1240|consen 1293 ALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFI 1372 (1431)
T ss_pred hcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhh
Confidence 1112233334568999999999999997542111 0
Q ss_pred ----------------EE--------ecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 005656 330 ----------------KF--------EGHTDRITDFCFSED-GKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 330 ----------------~~--------~~h~~~I~~l~~spd-g~~l~s~s~Dg~I~iwd 363 (685)
.. ..|..+|+++++... ..+|++++.||.|+||.
T Consensus 1373 ~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1373 IYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 136668888887653 45899999999999993
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.7e-15 Score=160.32 Aligned_cols=290 Identities=16% Similarity=0.210 Sum_probs=206.1
Q ss_pred ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccC---CCCCeEEEEec--CCCEEEEEeCCCceEEEE
Q 005656 46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH---SAPPLCIRFYA--NGRHILSAGQDRAFRLFS 120 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h---~~~v~~i~~~~--~~~~l~s~s~dg~i~vwd 120 (685)
..+-..+.|+|=.+.++++...-.|++||+..+ +.+..+..+ ...|+.+.+-. |...+++|+.||.||||+
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~----~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG----RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccC----ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 345677889998999999987789999999877 455444332 35688888865 356899999999999997
Q ss_pred eecCc-eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656 121 VIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 199 (685)
Q Consensus 121 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 199 (685)
-.... ... ..|..|..-.... +
T Consensus 1140 ~y~~~~~~~-------------------------------------------------eLVTaw~~Ls~~~------~-- 1162 (1387)
T KOG1517|consen 1140 DYADKWKKP-------------------------------------------------ELVTAWSSLSDQL------P-- 1162 (1387)
T ss_pred ccccccCCc-------------------------------------------------eeEEeeccccccC------c--
Confidence 53321 000 1112222111000 0
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEE
Q 005656 200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKV 278 (685)
Q Consensus 200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~i 278 (685)
...+.-.-+.|..+..+|++++.-..|++||.........++. +....|+++.-+-. |..++.|..||.|++
T Consensus 1163 ~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~-------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRv 1235 (1387)
T KOG1517|consen 1163 GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY-------GSSTLVTALSADLVHGNIIAAGFADGSVRV 1235 (1387)
T ss_pred cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-------CCCccceeecccccCCceEEEeecCCceEE
Confidence 1111225567888778888888889999999998887776643 55667777776543 588999999999999
Q ss_pred EECCCCc---eEEEeecC---CceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCee--EEEEecCC--C-CeEEEEEcCC
Q 005656 279 WDFKGRD---LKSRWEVG---CSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRM--VRKFEGHT--D-RITDFCFSED 346 (685)
Q Consensus 279 wd~~~~~---~~~~~~~~---~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~--~-~I~~l~~spd 346 (685)
||.+... .+..+..+ .+|..+.+.+.|- .|++|+.||.|++||++.... .-....|. + ..+++..+++
T Consensus 1236 yD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1236 YDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH 1315 (1387)
T ss_pred eecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC
Confidence 9988543 33444333 3489999998776 599999999999999987422 22222333 3 5999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeEEee--------ccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 347 GKWLLSSGMDGSLRIWDVILARQIDAIHV--------DVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 347 g~~l~s~s~Dg~I~iwd~~~~~~i~~~~~--------~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
...+|+|+. +.|+||++. |+.+..++. ...+.|++|+|-.-.||+|..|. .|.||..
T Consensus 1316 apiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds-~V~iYs~ 1380 (1387)
T KOG1517|consen 1316 APIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS-TVSIYSC 1380 (1387)
T ss_pred CCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc-eEEEeec
Confidence 999999998 999999975 555444432 12389999999999999997775 9999963
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.4e-15 Score=149.30 Aligned_cols=288 Identities=15% Similarity=0.209 Sum_probs=212.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.+.-+.|..+|||++++|||.+.-.|++||+.+-.+...-. -....|.-.-.+.|-..++--..|.+|-+..- .+
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-lDae~V~feiLsDD~SK~v~L~~DR~IefHak---~G 125 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-LDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK---YG 125 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-ccccceeEEEeccchhhheEeecCceeeehhh---cC
Confidence 345678899999999999999999999999998876554432 22344555555556556666667888766521 11
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
...... -...-..++++.-..-|+.++....|.-++++.|.....+.
T Consensus 126 --~hy~~R--IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~----------------------------- 172 (703)
T KOG2321|consen 126 --RHYRTR--IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE----------------------------- 172 (703)
T ss_pred --eeeeee--cCcCCccccccCCCccEEEeecCcceEEEEccccccccccc-----------------------------
Confidence 111111 12233556666555556666666778888887776544432
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
...+.+.+|.+++....+++|+.+|.|..||.++......+
T Consensus 173 ---------------------------------------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l 213 (703)
T KOG2321|consen 173 ---------------------------------------TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL 213 (703)
T ss_pred ---------------------------------------cccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence 44578899999999999999999999999999988777666
Q ss_pred ccccccccCCCCc-----CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--CceeEEEEeecCC-EEEEEe
Q 005656 241 LDMSERSNYAHNG-----EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNG-LLATVA 312 (685)
Q Consensus 241 ~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~-~l~~~~ 312 (685)
..... ...|.+ .|+++.|+.+|-.+++|..+|.+.|||+++.+++..-.+. .+|..+.|.+.+. --++..
T Consensus 214 ~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 214 DAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred ecccc--cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence 43221 113333 4999999999999999999999999999999888777665 7889999977643 233344
Q ss_pred CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656 313 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 313 ~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~ 367 (685)
+...++|||-.+|+....+. ....++++|+-|++.++++|-.++.+..|=++.-
T Consensus 292 Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 292 DKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred chHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 55789999999999988887 4455999999999999999999988888877653
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=3.9e-15 Score=151.91 Aligned_cols=291 Identities=13% Similarity=0.135 Sum_probs=186.7
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec-CCCcEEEEEecCCCCCCcee
Q 005656 7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLL 85 (685)
Q Consensus 7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~D~~v~iWd~~~~~~~~~~~ 85 (685)
.+.|+|||+ ++++++.||.|.++|+.+++.+.+++. .....++++++||++++++. .++.+.++|..+. +.+
T Consensus 41 ~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl----e~v 113 (369)
T PF02239_consen 41 GLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL----EPV 113 (369)
T ss_dssp EEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT------EE
T ss_pred EEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccc----cce
Confidence 467999999 777778899999999999999999983 34568999999999888775 5899999988775 445
Q ss_pred Eeccc-------CCCCCeEEEEecCCCEEEEEeCC-CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 86 RFRSG-------HSAPPLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 86 ~~~~~-------h~~~v~~i~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
+.... ....+..|..+|....++..-.| +.|.+.|....+....-.
T Consensus 114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-------------------------- 167 (369)
T PF02239_consen 114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-------------------------- 167 (369)
T ss_dssp EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE--------------------------
T ss_pred eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee--------------------------
Confidence 44332 23456778788887756555544 666666654432211100
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCcc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGIS 236 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~ 236 (685)
. ..........|+|++++++++ .....|.++|..++..
T Consensus 168 -------------------------------------i----~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 168 -------------------------------------I----KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp -------------------------------------E----E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred -------------------------------------e----cccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 0 113345678999999988765 5567899999998877
Q ss_pred ccccccccccccCCCCcCEEEEE-------E--cCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCE
Q 005656 237 RGSYLDMSERSNYAHNGEVVGVA-------C--DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGL 307 (685)
Q Consensus 237 ~~~~~~~~~~~~~~h~~~v~~l~-------~--~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~ 307 (685)
...+.. ....|..++..+- | ...+...++.-....+.+||..+.+.+.++...+.-.-+..||++++
T Consensus 207 v~~i~~----g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~ 282 (369)
T PF02239_consen 207 VALIDT----GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRY 282 (369)
T ss_dssp EEEEE-----SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SE
T ss_pred EEEeec----cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCcc
Confidence 654432 1113444443331 2 11223332333334566789999999999988765588899999999
Q ss_pred EEEE----eCCCeEEEEEcCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCceeeEEee
Q 005656 308 LATV----ADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGM--DGSLRIWDVILARQIDAIHV 375 (685)
Q Consensus 308 l~~~----~~dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s~--Dg~I~iwd~~~~~~i~~~~~ 375 (685)
+++. ...+.|.++|.++.+.+.++... ...+..+.|++||+++..+.. ++.|.|||..+.+.+..+..
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence 9998 44589999999999888887532 235899999999997765543 34799999999999998873
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.5e-15 Score=147.47 Aligned_cols=275 Identities=13% Similarity=0.179 Sum_probs=202.3
Q ss_pred ccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEeccc-CCCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656 44 AHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSV 121 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~ 121 (685)
.|...-+.|..+|||+|+ +||..--.|++||+..-. ++.-.. ....|.-.-.+.|-..++.-..|++|-+..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 577888999999999965 556667899999987642 222222 2334444444545444555555666654321
Q ss_pred ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 201 (685)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 201 (685)
....... .-
T Consensus 124 ~G~hy~~-----------------------------------------------------------------------RI 132 (703)
T KOG2321|consen 124 YGRHYRT-----------------------------------------------------------------------RI 132 (703)
T ss_pred cCeeeee-----------------------------------------------------------------------ec
Confidence 1000000 11
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
+..-..++++.-..-+++++....|+.+|+..|.....+. ...+.++++..++...+|++|+.+|.|.+||.
T Consensus 133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~--------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE--------TDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred CcCCccccccCCCccEEEeecCcceEEEEccccccccccc--------cccccceeeeecCccceEEecccCceEEEecc
Confidence 2333456666655667777888889999999999888774 45588999999999999999999999999999
Q ss_pred CCCceEEEeecCC------------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCCCeEEEEEcCC--
Q 005656 282 KGRDLKSRWEVGC------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSED-- 346 (685)
Q Consensus 282 ~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~spd-- 346 (685)
+....+.++.... .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 9887766665432 38999999999999999999999999999988876443 23457899999775
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656 347 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 404 (685)
Q Consensus 347 g~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW 404 (685)
+..|+|.. ...++|||-.+|+....+.....+..+|+-|++-++++|..+. .+..|
T Consensus 285 q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~-~m~~y 340 (703)
T KOG2321|consen 285 QNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS-KMHTY 340 (703)
T ss_pred CceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC-cceeE
Confidence 44566553 4679999999999999999888899999999999999998665 45444
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.3e-14 Score=136.56 Aligned_cols=302 Identities=11% Similarity=0.162 Sum_probs=193.1
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCC
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
.+..++|++.-- -+|++..|-.|++||-.. ++...++......|+|++|-|.+. -|+.|+ .+-|.+|..+......
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN 176 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence 466789998544 678889999999999777 666666656677899999999765 555554 4679999876543222
Q ss_pred ce----------eEecccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656 83 RL----------LRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 151 (685)
Q Consensus 83 ~~----------~~~~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (685)
+. +..-.|| .+|++++|.+||..+++++. |..|++||..++.......
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-------------------- 235 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-------------------- 235 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--------------------
Confidence 22 2223455 78999999999999999875 6789999998876433221
Q ss_pred CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 005656 152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 231 (685)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~ 231 (685)
...+.++-+.|||||.++++++-|+..++|+.
T Consensus 236 ------------------------------------------------~glgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 236 ------------------------------------------------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred ------------------------------------------------cCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 34567889999999999999999999999965
Q ss_pred CCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEE-E
Q 005656 232 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA-T 310 (685)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~ 310 (685)
.......... -..+.|...+|+|+|++|..+.. |.-++|.+. |......+. .
T Consensus 268 ~q~wt~erw~--------lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~------------------f~~~~~~~~~~ 320 (445)
T KOG2139|consen 268 NQSWTKERWI--------LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLT------------------FDGEDSVFLRP 320 (445)
T ss_pred cccceeccee--------ccCCceeeeeecCCCCEEEEEEc-CCceEEEEe------------------ecCCCccccCc
Confidence 4332221111 33459999999999987665542 333334332 211111110 1
Q ss_pred EeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEEcCCCceeeEEe----eccc
Q 005656 311 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG--------SLRIWDVILARQIDAIH----VDVS 378 (685)
Q Consensus 311 ~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg--------~I~iwd~~~~~~i~~~~----~~~~ 378 (685)
++.....-+-|+..-....--+--.+.+.+++|.|.|.+||+.-..+ .|.+||....-.+.... ....
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~ 400 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY 400 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC
Confidence 22222223333321110000011346788999999999999875433 47778876554443331 1222
Q ss_pred eEEEEEcC---CCCeEEEEEeCCCeEEEEE
Q 005656 379 ITALSLSP---NMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 379 v~~v~~sp---dg~~Lat~~~d~~~I~lW~ 405 (685)
..-++|+| +|.+|.++=..| .+.-|.
T Consensus 401 P~~IsF~pl~n~g~lLsiaWsTG-riq~yp 429 (445)
T KOG2139|consen 401 PAYISFGPLKNEGRLLSIAWSTG-RIQRYP 429 (445)
T ss_pred CceEEeeecccCCcEEEEEeccC-ceEeee
Confidence 55566666 566777776665 666554
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=5.7e-14 Score=130.30 Aligned_cols=239 Identities=15% Similarity=0.246 Sum_probs=165.6
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEE-ecCC------CcEEEEEec
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS-ASAD------NSIKMWIFD 76 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~D------~~v~iWd~~ 76 (685)
...+++|+.|.. .+++|..+| .+||+.+.-+.....+ .+.+++.-+...-..++|+- ||.+ +.|.||| +
T Consensus 7 ~~lsvs~NQD~S-cFava~~~G-friyn~~P~ke~~~r~-~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD-D 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVATDTG-FRIYNCDPFKESASRQ-FIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD-D 82 (346)
T ss_pred ceeEEEEccCCc-eEEEEecCc-eEEEecCchhhhhhhc-cccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe-c
Confidence 456799999988 899988777 8999988744433332 23333322222223444443 3333 5799998 3
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC-ceeeEechhhHHHHHhhccccccccccCcee
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
.. .+++..+ ....+|.++.+.++ .|++.- .+.|.||...++ +....+..
T Consensus 83 ~k---~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et----------------------- 132 (346)
T KOG2111|consen 83 LK---ERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIET----------------------- 132 (346)
T ss_pred cc---CcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeec-----------------------
Confidence 22 2555554 45788999999876 555544 667999987633 22222210
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE-EecCCcEEEEECCCC
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTAGGWIERFNLQSG 234 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~~~d~~~~ 234 (685)
. ..+..+.+++-+.+...|+. |..-|.|.+-|+...
T Consensus 133 ------------------------------------------~-~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 133 ------------------------------------------R-SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred ------------------------------------------c-cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 0 22333444444444444544 556699999999876
Q ss_pred ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe-EEEEECCCCceEEEeecC---CceeEEEEeecCCEEEE
Q 005656 235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD-IKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLAT 310 (685)
Q Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~ 310 (685)
...... ...+|.+.|.|++.+-+|..+||+|..|+ |+|||..+|.++..+..+ ..|.+++|+|++.+||+
T Consensus 170 ~~~~p~------~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 170 KPNAPS------IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred CcCCce------EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 663111 12299999999999999999999999997 799999999999988764 78999999999999999
Q ss_pred EeCCCeEEEEEcCCC
Q 005656 311 VADDLVIRLFDVVAL 325 (685)
Q Consensus 311 ~~~dg~I~i~d~~~~ 325 (685)
+++.|+++||.++..
T Consensus 244 sSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDT 258 (346)
T ss_pred EcCCCeEEEEEeecC
Confidence 999999999988753
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.4e-14 Score=151.65 Aligned_cols=233 Identities=14% Similarity=0.042 Sum_probs=156.1
Q ss_pred CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecCceeeEechhhHHHHHhhccc
Q 005656 68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKM 144 (685)
Q Consensus 68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 144 (685)
..|.+||.+.. ..+.+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.....
T Consensus 184 ~~l~i~D~~g~-----~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-------------- 244 (433)
T PRK04922 184 YALQVADSDGY-----NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-------------- 244 (433)
T ss_pred EEEEEECCCCC-----CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec--------------
Confidence 35777776532 122334567789999999999999987743 36888888665432111
Q ss_pred cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecC
Q 005656 145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAG 223 (685)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~d 223 (685)
.......+..|+|+|+.+++. +.+
T Consensus 245 -------------------------------------------------------~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 245 -------------------------------------------------------SFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred -------------------------------------------------------cCCCCccCceECCCCCEEEEEEeCC
Confidence 112234467999999988654 445
Q ss_pred C--cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CCe--EEEEECCCCceEEEeecCCceeE
Q 005656 224 G--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGD--IKVWDFKGRDLKSRWEVGCSLVK 298 (685)
Q Consensus 224 g--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~i~~ 298 (685)
| .|++||+.++...... .+.......+|+|+|+.++.++. +|. |+++|+.+++.............
T Consensus 270 g~~~Iy~~d~~~g~~~~lt---------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~ 340 (433)
T PRK04922 270 GNPEIYVMDLGSRQLTRLT---------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNAR 340 (433)
T ss_pred CCceEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence 5 6999999888654321 44445567899999998887763 444 77778777765443333334557
Q ss_pred EEEeecCCEEEEEeCCC---eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeE
Q 005656 299 IVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDA 372 (685)
Q Consensus 299 ~~~~~~~~~l~~~~~dg---~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---g~I~iwd~~~~~~i~~ 372 (685)
.+|+|+|+.++..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++. +.....
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~ 417 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQR 417 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEE
Confidence 89999999888765443 6999999888754 343 32345567999999988876653 358888875 444455
Q ss_pred Eee-ccceEEEEEcC
Q 005656 373 IHV-DVSITALSLSP 386 (685)
Q Consensus 373 ~~~-~~~v~~v~~sp 386 (685)
+.. ...+...+|+|
T Consensus 418 l~~~~g~~~~p~wsp 432 (433)
T PRK04922 418 LVSADGEVREPAWSP 432 (433)
T ss_pred cccCCCCCCCCccCC
Confidence 543 34477788876
No 219
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=2.7e-15 Score=147.66 Aligned_cols=182 Identities=13% Similarity=0.140 Sum_probs=140.7
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656 200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 279 (685)
Q Consensus 200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 279 (685)
.|.+.+.+-.|+|+|.-+++.+.||.|++|. ++|-.+..+. ....+|.|++|.|+...++.|. .+.+.|=
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~--------Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IK 171 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV--------QNEESIRCARWAPNSNSIVFCQ-GGHISIK 171 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh--------hcCceeEEEEECCCCCceEEec-CCeEEEe
Confidence 5678888999999999999999999999998 4555554443 5667899999999987766654 3667777
Q ss_pred ECCCCc-eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656 280 DFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS 358 (685)
Q Consensus 280 d~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~ 358 (685)
.+.... +++--.|++-|.++.|++.++++++|+.|...+|||-. |+.+..-..|..+|++++|.|+ +.++.+|. ++
T Consensus 172 pL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt 248 (737)
T KOG1524|consen 172 PLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NT 248 (737)
T ss_pred ecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-ee
Confidence 766444 44444556889999999999999999999999999965 5666667789999999999999 55666653 34
Q ss_pred EEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656 359 LRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 404 (685)
Q Consensus 359 I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW 404 (685)
.|+=.. .-+.|..++||+||..++.|+..|..|.-+
T Consensus 249 ~R~~~p----------~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 249 ARFSSP----------RVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeecCC----------CccceEEEEEcCCCceeeccccCceEEEee
Confidence 551111 123488999999999999999887444434
No 220
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=5.2e-15 Score=137.12 Aligned_cols=244 Identities=12% Similarity=0.111 Sum_probs=183.7
Q ss_pred cccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC
Q 005656 45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 124 (685)
Q Consensus 45 h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~ 124 (685)
-..+|+|.+|++|+..+|.+-....|.||..... ..++..+++..|...|++|+|+|.++.|++|+.|..-.+|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~-~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCC-CCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 3578999999999999999999999999987654 346788899999999999999999999999999999999976322
Q ss_pred ce-eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656 125 QQ-SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 203 (685)
Q Consensus 125 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 203 (685)
.. ..++
T Consensus 88 ~~Wkptl------------------------------------------------------------------------- 94 (361)
T KOG1523|consen 88 GTWKPTL------------------------------------------------------------------------- 94 (361)
T ss_pred Ceeccce-------------------------------------------------------------------------
Confidence 11 0000
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 283 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (685)
....++..++++.|+|.++.|++|+....|.+|-++.
T Consensus 95 -------------------------------------------vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 95 -------------------------------------------VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred -------------------------------------------eEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 0116777888899999888899888888888888765
Q ss_pred CceE-----EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcC-----C-------------CeeEEEEecCCCCeEE
Q 005656 284 RDLK-----SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV-----A-------------LRMVRKFEGHTDRITD 340 (685)
Q Consensus 284 ~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~-----~-------------~~~~~~~~~h~~~I~~ 340 (685)
..-- ......+.|+++.|+|++-+|++|+.|+..+||..- . |+++.++....+.|..
T Consensus 132 ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~ 211 (361)
T KOG1523|consen 132 ENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHG 211 (361)
T ss_pred ccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceee
Confidence 4322 122334789999999999999999999999998631 1 2344455456678999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeeEE-eeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 341 FCFSEDGKWLLSSGMDGSLRIWDVILAR-QIDAI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 341 l~~spdg~~l~s~s~Dg~I~iwd~~~~~-~i~~~-~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+.|+|+|..|+-.+.|+++.+=|..... .+... ..+-+..++.|-.+...++++..-+-.++..+
T Consensus 212 v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 212 VLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVTD 278 (361)
T ss_pred eEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEEEec
Confidence 9999999999999999999999976654 23333 23456788888777665555543233444443
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=4e-16 Score=151.09 Aligned_cols=264 Identities=15% Similarity=0.210 Sum_probs=206.3
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee
Q 005656 6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 85 (685)
Q Consensus 6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 85 (685)
..+.++.+|+ .|+.|+..|.|..+|+.++++...+. -...|..+.|..+.+++|++- .+.+.|||-.. ..+
T Consensus 133 Y~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~G-----tEl 203 (545)
T KOG1272|consen 133 YHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNG-----TEL 203 (545)
T ss_pred eeeeecCCcc-EEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhh-hceEEEecCCC-----cEE
Confidence 4678899999 78888899999999999999998886 567899999999998888875 45788886332 445
Q ss_pred EecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656 86 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 165 (685)
Q Consensus 86 ~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (685)
..++.| ..|..+.|.|.--+|++++..|.++.-|+.+++.+..+.
T Consensus 204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~---------------------------------- 248 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR---------------------------------- 248 (545)
T ss_pred eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH----------------------------------
Confidence 555444 468999999998888999999999999999988766553
Q ss_pred CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccc
Q 005656 166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE 245 (685)
Q Consensus 166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~ 245 (685)
...+.+..++-+|-+..+-+|..+|+|.+|...+......+.
T Consensus 249 ----------------------------------t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL---- 290 (545)
T KOG1272|consen 249 ----------------------------------TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL---- 290 (545)
T ss_pred ----------------------------------ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH----
Confidence 335567777888888899999999999999999988887765
Q ss_pred cccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEc-CC
Q 005656 246 RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV-VA 324 (685)
Q Consensus 246 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~-~~ 324 (685)
.|.++|.+++++++|++++|+|.|..++|||++....+.++..+.+...+++|..| +||++ ....|.||.- -.
T Consensus 291 ----cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~ 364 (545)
T KOG1272|consen 291 ----CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALS-YGDHVQIWKDALK 364 (545)
T ss_pred ----hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeee-cCCeeeeehhhhc
Confidence 89999999999999999999999999999999988777777767788888888544 44444 3457888842 22
Q ss_pred Ce--eEEEEecC--CCCeEEEEEcCCCCEEEEEeCCC
Q 005656 325 LR--MVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 325 ~~--~~~~~~~h--~~~I~~l~~spdg~~l~s~s~Dg 357 (685)
+. .-..+-.| .++|.++.|.|-...|-.|-.-|
T Consensus 365 ~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 365 GSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred CCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 11 11111112 34788888888766666655444
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.1e-14 Score=150.06 Aligned_cols=233 Identities=8% Similarity=0.043 Sum_probs=159.9
Q ss_pred cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec---CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec
Q 005656 26 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 102 (685)
Q Consensus 26 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s---~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 102 (685)
.|.+||.......... .+...+.+.+|+|||+.|+..+ .+..+.+|++..+ ..+.+....+ .+....|+|
T Consensus 180 ~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G--~~~~l~~~~~---~~~~~~~SP 252 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AVRQVASFPR---HNGAPAFSP 252 (429)
T ss_pred eEEEEcCCCCCCEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--CeEEccCCCC---CcCCeEECC
Confidence 6999998876554433 4667899999999999888654 2456888887654 2233333333 345689999
Q ss_pred CCCEEEEE-eCCC--ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656 103 NGRHILSA-GQDR--AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 179 (685)
Q Consensus 103 ~~~~l~s~-s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (685)
||+.|+.. +.+| .|.+||+.++......
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt------------------------------------------------- 283 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQVT------------------------------------------------- 283 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-------------------------------------------------
Confidence 99988865 4455 4777777655322111
Q ss_pred EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-C--cEEEEECCCCccccccccccccccCCCCcCEE
Q 005656 180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-G--WIERFNLQSGISRGSYLDMSERSNYAHNGEVV 256 (685)
Q Consensus 180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (685)
.....+....|+|+|+.++..+.. | .|+++|+.++...... .+.....
T Consensus 284 --------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt---------~~~~~~~ 334 (429)
T PRK03629 284 --------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT---------WEGSQNQ 334 (429)
T ss_pred --------------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee---------cCCCCcc
Confidence 122345678999999999877764 3 5666677766543221 2333456
Q ss_pred EEEEcCCCCEEEEEECC---CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCe---EEEEEcCCCeeEEE
Q 005656 257 GVACDSTNTLMISAGYH---GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV---IRLFDVVALRMVRK 330 (685)
Q Consensus 257 ~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---I~i~d~~~~~~~~~ 330 (685)
...|+|+|++++..+.+ ..|.+||+.++.... +..........|+|||++|+.++.++. +.++++ +++..+.
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~ 412 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKAR 412 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEE
Confidence 78899999998876643 358899998886543 322333456789999999998887764 677777 4666677
Q ss_pred EecCCCCeEEEEEcC
Q 005656 331 FEGHTDRITDFCFSE 345 (685)
Q Consensus 331 ~~~h~~~I~~l~~sp 345 (685)
+.+|.+.+...+|+|
T Consensus 413 l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 413 LPATDGQVKFPAWSP 427 (429)
T ss_pred CccCCCCcCCcccCC
Confidence 888889999999997
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.8e-14 Score=133.34 Aligned_cols=262 Identities=19% Similarity=0.283 Sum_probs=165.5
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee------------eEEee-cccccCeeEEEEeCCCcEEEEecC-C
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL------------QSVIR-EAHDNAIISLHFFANEPVLMSASA-D 67 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~------------~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~-D 67 (685)
+..|+|++|.|.+..-|++|+..| |.+|.....-. ...++ .+| .+|+++.|.+||..+++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 346999999998877899998766 99998653211 11222 144 68999999999999999986 6
Q ss_pred CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656 68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 147 (685)
Q Consensus 68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (685)
..|.|||.+++...+-. ....+.+.-+.|+|||.+|+.++-|+..++|............
T Consensus 218 ssi~iWdpdtg~~~pL~----~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~---------------- 277 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLI----PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI---------------- 277 (445)
T ss_pred ceEEEEcCCCCCccccc----ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee----------------
Confidence 78999999988543322 2335668889999999999999999999999643221111000
Q ss_pred ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656 148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 227 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 227 (685)
...+.|...+|+|+|.+++...... -.
T Consensus 278 ----------------------------------------------------lgsgrvqtacWspcGsfLLf~~sgs-p~ 304 (445)
T KOG2139|consen 278 ----------------------------------------------------LGSGRVQTACWSPCGSFLLFACSGS-PR 304 (445)
T ss_pred ----------------------------------------------------ccCCceeeeeecCCCCEEEEEEcCC-ce
Confidence 2244899999999999988766432 22
Q ss_pred EEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeEEEEECCCCceEE-EeecCCceeEEEEeecC
Q 005656 228 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVN 305 (685)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~-~~~~~~~i~~~~~~~~~ 305 (685)
+.++.|+.....+. .++.....-+-|+..-.... .....+++.+++|.|.|
T Consensus 305 ---------------------------lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 305 ---------------------------LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred ---------------------------EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 33333332211111 12222222333332111000 11124678999999999
Q ss_pred CEEEEEeCCC--------eEEEEEcCCCeeEEEEe-c--CCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcC
Q 005656 306 GLLATVADDL--------VIRLFDVVALRMVRKFE-G--HTDRITDFCFSE---DGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 306 ~~l~~~~~dg--------~I~i~d~~~~~~~~~~~-~--h~~~I~~l~~sp---dg~~l~s~s~Dg~I~iwd~~ 365 (685)
.+||+....+ .|.+||.+..-.+.-.. | .......++|+| +|++|..+=..|.+.-|++.
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 9999986544 36677766543332221 1 112245667776 56667666667777777653
No 224
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=7.7e-15 Score=134.01 Aligned_cols=239 Identities=17% Similarity=0.252 Sum_probs=170.0
Q ss_pred CCCcEEEEEEccCCC----CEEEEEeCCCcEEEEeCCC--Cee--eEEe----ecccccCeeEEEEeC-CCcEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQ----PLLASGASSGVISIWNLEK--RRL--QSVI----REAHDNAIISLHFFA-NEPVLMSASAD 67 (685)
Q Consensus 1 h~~~V~~l~fspdg~----~~latg~~dg~I~vwd~~~--~~~--~~~~----~~~h~~~V~~l~~sp-~~~~l~s~s~D 67 (685)
|.=|++.+.|.|+.. .+|||.+ ..+++|.+.. .+. ...+ ...+.+++++..|+. +-+++.++|-|
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 445789999999862 3777654 5799998873 221 1111 124678999999997 45688999999
Q ss_pred CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656 68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE 146 (685)
Q Consensus 68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (685)
.+..|||+.++. .......+-.|...|..|+|...+ +.++++|.||.+|+||++.-.-...+-.
T Consensus 173 TTCTiWdie~~~-~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE-------------- 237 (364)
T KOG0290|consen 173 TTCTIWDIETGV-SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE-------------- 237 (364)
T ss_pred CeEEEEEEeecc-ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec--------------
Confidence 999999999861 123445567899999999999864 4788999999999999976543332210
Q ss_pred cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEe-cCC
Q 005656 147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGT-AGG 224 (685)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~-~dg 224 (685)
.+....+...++|++. -+++++-. ...
T Consensus 238 ---------------------------------------------------~p~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 238 ---------------------------------------------------DPSPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred ---------------------------------------------------CCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence 0012445667777764 35555543 445
Q ss_pred cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCc------eEEEeecCCcee
Q 005656 225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRD------LKSRWEVGCSLV 297 (685)
Q Consensus 225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~i~ 297 (685)
.|.+.|++....... ...+|.+.|.+++|.|.. ..|.++|.|..+.+||+...- ++..+..++.|.
T Consensus 267 ~V~iLDiR~P~tpva-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVN 339 (364)
T KOG0290|consen 267 KVVILDIRVPCTPVA-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVN 339 (364)
T ss_pred eEEEEEecCCCccee-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceee
Confidence 799999986543222 223999999999999965 689999999999999997532 233444568899
Q ss_pred EEEEeec-CCEEEEEeCC
Q 005656 298 KIVYHRV-NGLLATVADD 314 (685)
Q Consensus 298 ~~~~~~~-~~~l~~~~~d 314 (685)
.+.|++. +.+++++...
T Consensus 340 qi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 340 QIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeecccCCCEEEEEecC
Confidence 9999964 5588877643
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.9e-13 Score=136.20 Aligned_cols=315 Identities=13% Similarity=0.188 Sum_probs=207.2
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEe-----cCC-----CcEEEE
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-----SAD-----NSIKMW 73 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-----s~D-----~~v~iW 73 (685)
+++..++|++|+ ++|.+. ++.++|++..++..+.+.. ...++++.|+|-+.+|.|- ..+ -.+++|
T Consensus 36 ~~~v~~~S~~G~-lfA~~~-~~~v~i~~~~~~~~~lt~~---~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 36 PCNVFAYSNNGR-LFAYSD-NQVVKVFEIATLKVVLCVE---LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred cceeEEEcCCCc-EEEEEc-CCeEEEEEccCCcEEEEec---cceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 356788999998 777654 6789999999886544443 2278999999999998873 122 346799
Q ss_pred EecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
++.++ .....+......-++..|+.|..+.+ --..+.+.+|++...+....-
T Consensus 111 ~vet~----~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~k----------------------- 162 (566)
T KOG2315|consen 111 NVETG----VQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHK----------------------- 162 (566)
T ss_pred eeccc----eehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceeee-----------------------
Confidence 88874 22222222222226889998864332 222456888887552211100
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC--CEEEE-----EecCCcE
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVL-----GTAGGWI 226 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~-----g~~dg~i 226 (685)
-+...+..+.+||.+ .++++ ++.-+.|
T Consensus 163 ----------------------------------------------l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~v 196 (566)
T KOG2315|consen 163 ----------------------------------------------LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASV 196 (566)
T ss_pred ----------------------------------------------eeccceeeEEecCCCCCceEEEEccCCCCCCcEE
Confidence 234557777777753 33333 2344578
Q ss_pred EEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCE-E--EEEECC---------CeEEEEECCCCceEEEeecCC
Q 005656 227 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL-M--ISAGYH---------GDIKVWDFKGRDLKSRWEVGC 294 (685)
Q Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l--~s~s~d---------g~i~iwd~~~~~~~~~~~~~~ 294 (685)
++|...-.......... . -....-..+.|++.|+- | ++...| .++++.++.+......+...+
T Consensus 197 ri~~~~~~~~~~~~a~k---s--FFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G 271 (566)
T KOG2315|consen 197 RIYKYPEEGQHQPVANK---S--FFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG 271 (566)
T ss_pred EEeccccccccchhhhc---c--ccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence 88877632222111100 0 01122235677776653 2 222233 368888888666666777789
Q ss_pred ceeEEEEeecCCEEEEE--eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCce
Q 005656 295 SLVKIVYHRVNGLLATV--ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQ 369 (685)
Q Consensus 295 ~i~~~~~~~~~~~l~~~--~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~---Dg~I~iwd~~~~~~ 369 (685)
+|.++.|+|+++-++++ -.=.++.|||++ +.++..| ..++=+++-|+|.|++|+.+|- -|.|-|||+.+.++
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL 348 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence 99999999999866554 445689999986 4555554 4567788999999999998874 48899999999888
Q ss_pred eeEEeeccceEEEEEcCCCCeEEEEEeC-----CCeEEEEEc
Q 005656 370 IDAIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVN 406 (685)
Q Consensus 370 i~~~~~~~~v~~v~~spdg~~Lat~~~d-----~~~I~lW~~ 406 (685)
+..+.... .+-+.|+|||++++|++.. +|+++||+.
T Consensus 349 i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 349 IAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred ccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 88776543 4567999999999999865 468999984
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=4e-14 Score=149.21 Aligned_cols=232 Identities=12% Similarity=0.072 Sum_probs=155.7
Q ss_pred cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC---CCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
.|.+||.+... .+. +..+...+.+.+|+|||+.|+..+. +..|.+|++.+++.....
T Consensus 180 ~l~~~d~dg~~--~~~---lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--------------- 239 (429)
T PRK03629 180 ELRVSDYDGYN--QFV---VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------------- 239 (429)
T ss_pred eEEEEcCCCCC--CEE---eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc---------------
Confidence 56777665432 122 2345678999999999999887643 346788887655421111
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG 224 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg 224 (685)
..........|+|+|+.++.. ..+|
T Consensus 240 ------------------------------------------------------~~~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 240 ------------------------------------------------------SFPRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred ------------------------------------------------------CCCCCcCCeEECCCCCEEEEEEcCCC
Confidence 112233457999999988865 3344
Q ss_pred --cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEeecCCceeEE
Q 005656 225 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-G--DIKVWDFKGRDLKSRWEVGCSLVKI 299 (685)
Q Consensus 225 --~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~i~~~ 299 (685)
.|++||+.++...... .+...+....|+|+|+.|+.++.+ | .|+++|+.++...............
T Consensus 266 ~~~I~~~d~~tg~~~~lt---------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~ 336 (429)
T PRK03629 266 SLNLYVMDLASGQIRQVT---------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA 336 (429)
T ss_pred CcEEEEEECCCCCEEEcc---------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 5999999887654332 334567789999999988877754 4 4555577776554433333455678
Q ss_pred EEeecCCEEEEEeCC---CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEEcCCCceeeEE
Q 005656 300 VYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS---LRIWDVILARQIDAI 373 (685)
Q Consensus 300 ~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~---I~iwd~~~~~~i~~~ 373 (685)
.|+|+|++++..+.+ ..|++||+.+++.. .+... .......|+|||++|+.++.++. +.++++ +|.....+
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l 413 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARL 413 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEEC
Confidence 999999988876543 36889999888643 34322 23446789999999999887764 677777 45555555
Q ss_pred ee-ccceEEEEEcC
Q 005656 374 HV-DVSITALSLSP 386 (685)
Q Consensus 374 ~~-~~~v~~v~~sp 386 (685)
.. ...+...+|+|
T Consensus 414 ~~~~~~~~~p~Wsp 427 (429)
T PRK03629 414 PATDGQVKFPAWSP 427 (429)
T ss_pred ccCCCCcCCcccCC
Confidence 54 44588889987
No 227
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.66 E-value=1.8e-12 Score=132.90 Aligned_cols=285 Identities=16% Similarity=0.206 Sum_probs=187.4
Q ss_pred EEEEeCC----CcEEEEeC--CCCeeeEEeecccccCeeEEEEeCCCcEEEEecC----CCcEEEEEecCCCCCCceeEe
Q 005656 18 LASGASS----GVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRF 87 (685)
Q Consensus 18 latg~~d----g~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----D~~v~iWd~~~~~~~~~~~~~ 87 (685)
+++|++. +.|.+|++ +++++...-...-......++++|++++|.++.. ++.|..|.++...+....+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556655 68999988 5565543322134456678999999999988866 579999998876454455555
Q ss_pred cccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656 88 RSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 166 (685)
Q Consensus 88 ~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (685)
.......+..++++|++++|+++.. +|.|.++++...........
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~---------------------------------- 127 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ---------------------------------- 127 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE----------------------------------
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee----------------------------------
Confidence 4435566788999999999998875 78999999876432221100
Q ss_pred CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656 167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER 246 (685)
Q Consensus 167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~ 246 (685)
++... +.-..
T Consensus 128 -------------------------------------------------------------~~~~~-g~g~~-------- 137 (345)
T PF10282_consen 128 -------------------------------------------------------------TVRHE-GSGPN-------- 137 (345)
T ss_dssp -------------------------------------------------------------EEESE-EEESS--------
T ss_pred -------------------------------------------------------------ecccC-CCCCc--------
Confidence 00000 00000
Q ss_pred ccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCc--eEE----EeecCCceeEEEEeecCCEEEEEe-CCCeEE
Q 005656 247 SNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRD--LKS----RWEVGCSLVKIVYHRVNGLLATVA-DDLVIR 318 (685)
Q Consensus 247 ~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~--~~~----~~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~ 318 (685)
..........++.++|+++++++.. ....|.+|++.... +.. .+........++|+|+++++++.. .++.|.
T Consensus 138 ~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 138 PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 0002234466788899988887765 34578888887654 322 234457889999999999776665 477899
Q ss_pred EEEcC--CCe--eEEEEec----C--CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC--CCce--eeEEeeccc-eEEE
Q 005656 319 LFDVV--ALR--MVRKFEG----H--TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVI--LARQ--IDAIHVDVS-ITAL 382 (685)
Q Consensus 319 i~d~~--~~~--~~~~~~~----h--~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~--~~~~--i~~~~~~~~-v~~v 382 (685)
+|++. ++. .+..+.. . ......++++|||++|+++. ..++|.+|++. +|.+ +..+..... .+.+
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~ 297 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHF 297 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEE
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEE
Confidence 99988 443 3333331 1 12578999999999988765 56789999993 3433 344444334 9999
Q ss_pred EEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 383 SLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 383 ~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
+++|+|++|++++.+++.|.+|+.
T Consensus 298 ~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCEEEEEecCCCeEEEEEE
Confidence 999999999999999889999974
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.8e-13 Score=144.42 Aligned_cols=219 Identities=12% Similarity=0.074 Sum_probs=143.6
Q ss_pred cccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656 88 RSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 164 (685)
Q Consensus 88 ~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (685)
+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.....
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---------------------------------- 236 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---------------------------------- 236 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee----------------------------------
Confidence 34677889999999999999887643 35888898766432211
Q ss_pred cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE-EecCCcEEE--EECCCCccccccc
Q 005656 165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTAGGWIER--FNLQSGISRGSYL 241 (685)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~~--~d~~~~~~~~~~~ 241 (685)
.......+..|+|+|+.++. .+.+|...+ +|+.++... .+.
T Consensus 237 -----------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt 280 (427)
T PRK02889 237 -----------------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-RLT 280 (427)
T ss_pred -----------------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-ECC
Confidence 12234557899999998875 566776444 455555432 221
Q ss_pred cccccccCCCCcCEEEEEEcCCCCEEEEEEC-CCeEEEEE--CCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC---
Q 005656 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWD--FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL--- 315 (685)
Q Consensus 242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--- 315 (685)
.+.+......|+|+|+.++..+. +|...+|. +.++................|+|+|++++..+.++
T Consensus 281 --------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~ 352 (427)
T PRK02889 281 --------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAF 352 (427)
T ss_pred --------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence 34445567889999998876654 45556665 44554433222223344678999999988777654
Q ss_pred eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCceeeEEeec-cceEEEEEcCC
Q 005656 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAIHVD-VSITALSLSPN 387 (685)
Q Consensus 316 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg---~I~iwd~~~~~~i~~~~~~-~~v~~v~~spd 387 (685)
.|++||+.+++... +..+ .......|+|||++|+.++.++ .+.+.++ +|.....+..+ ..+...+|+|-
T Consensus 353 ~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 353 KLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 69999999887543 3322 3346789999999998777544 3555565 46555555543 44777888873
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.66 E-value=1.9e-14 Score=134.51 Aligned_cols=327 Identities=17% Similarity=0.256 Sum_probs=208.1
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-----eeEEeecccc------------cCeeEEEEeCCCc--EEEE
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----LQSVIREAHD------------NAIISLHFFANEP--VLMS 63 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~-----~~~~~~~~h~------------~~V~~l~~sp~~~--~l~s 63 (685)
+-|.++.|..+|. +||||..+|.|.++.-+... ....++ .|. ..|..+.|.++++ .++.
T Consensus 26 diis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 26 DIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred cceeeEEeecccc-eEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 3589999999999 99999999999999654322 233333 453 4688999999765 5666
Q ss_pred ecCCCcEEEEEecCCCCCC-------------------------------ceeE-ecccCCCCCeEEEEecCCCEEEEEe
Q 005656 64 ASADNSIKMWIFDTTDGDP-------------------------------RLLR-FRSGHSAPPLCIRFYANGRHILSAG 111 (685)
Q Consensus 64 ~s~D~~v~iWd~~~~~~~~-------------------------------~~~~-~~~~h~~~v~~i~~~~~~~~l~s~s 111 (685)
.+.|.+|++|.+....... .+.+ .-.+|..-|++|.++.|...++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 6789999999876532211 0000 1246788899999999988888765
Q ss_pred CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccC
Q 005656 112 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 191 (685)
Q Consensus 112 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 191 (685)
|=.|.+|+++-..+...+ -|+....+.
T Consensus 184 -dLRINLWnlei~d~sFnI----------------------------------------------------VDIKP~nmE 210 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNI----------------------------------------------------VDIKPANME 210 (433)
T ss_pred -ceeeeeccccccCCceeE----------------------------------------------------EEccccCHH
Confidence 677999988643322221 111111110
Q ss_pred ceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCccccc----ccccc----ccccCCCCcCEEEEEEcC
Q 005656 192 EHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGS----YLDMS----ERSNYAHNGEVVGVACDS 262 (685)
Q Consensus 192 ~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~~~----~~~~~----~~~~~~h~~~v~~l~~~~ 262 (685)
....-|++..|+|. .+.++..++.|.|++.|++....... +.... ......--..|..+.|++
T Consensus 211 --------eLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~ 282 (433)
T KOG1354|consen 211 --------ELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH 282 (433)
T ss_pred --------HHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc
Confidence 11234677788884 46777888899999999985432211 11000 000112235788999999
Q ss_pred CCCEEEEEECCCeEEEEECC-CCceEEEeecCC----------------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656 263 TNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGC----------------SLVKIVYHRVNGLLATVADDLVIRLFDVVAL 325 (685)
Q Consensus 263 ~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~ 325 (685)
+|+++++-+. -+|++||+. ..+++.+++.+. .-..++|+-++.++++|+..+.+++|+...|
T Consensus 283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 9999988654 689999994 556666665431 1245788888889999999999999997766
Q ss_pred ee-EEEEecCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEE
Q 005656 326 RM-VRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVY 402 (685)
Q Consensus 326 ~~-~~~~~~h~~~--I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~ 402 (685)
.. -.++...... +..+ ..-+.+.+++......+ -+..+.....+...+|+|..+.+|++..+ .++
T Consensus 362 sk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~-------~vd~ldf~kkilh~aWhp~en~ia~aatn--nly 429 (433)
T KOG1354|consen 362 SKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEI-------SVDALDFRKKILHTAWHPKENSIAVAATN--NLY 429 (433)
T ss_pred cceeecccccccCCccccc---ccceeeecCCCcccccc-------ccchhhhhhHHHhhccCCccceeeeeecC--ceE
Confidence 32 2222222111 1111 11234444444433222 22333444457788999999999999866 577
Q ss_pred EEE
Q 005656 403 LWV 405 (685)
Q Consensus 403 lW~ 405 (685)
+|.
T Consensus 430 if~ 432 (433)
T KOG1354|consen 430 IFQ 432 (433)
T ss_pred Eec
Confidence 763
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.8e-14 Score=137.06 Aligned_cols=273 Identities=13% Similarity=0.169 Sum_probs=195.5
Q ss_pred CcEEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeeeEEe-----ecccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656 3 GAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVI-----REAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~-~dg~I~vwd~~~~~~~~~~-----~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~ 76 (685)
..|++++|..|++.-+..+. .+..+..++.....+...+ .....++|..++.. ...|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence 35788888877764344444 6667777777766655443 12456777777765 3378888889999999887
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecCCCEE-EEEeCC--CceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHI-LSAGQD--RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
.++.....+..+..+ .++..+.-++...++ ++||.. ..+.+||+...+++..
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~------------------------ 188 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS------------------------ 188 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeee------------------------
Confidence 654222233333222 445556666654444 457777 7888999876633221
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 233 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~ 233 (685)
..+... .. -+=.|-+
T Consensus 189 -------------------------------aKNvpn-----------------------D~------L~LrVPv----- 203 (412)
T KOG3881|consen 189 -------------------------------AKNVPN-----------------------DR------LGLRVPV----- 203 (412)
T ss_pred -------------------------------ccCCCC-----------------------cc------ccceeee-----
Confidence 111000 00 0001223
Q ss_pred CccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEECCCeEEEEECCCC-ceEEEeecC-CceeEEEEeecCCEEE
Q 005656 234 GISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLLA 309 (685)
Q Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~~~~~~~l~ 309 (685)
.++++.|-+. ...|++++.-+.+++||.+.+ +++..+... .+++++...|++++++
T Consensus 204 --------------------W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy 263 (412)
T KOG3881|consen 204 --------------------WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY 263 (412)
T ss_pred --------------------eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence 3455666665 778999999999999999854 567777664 8999999999999999
Q ss_pred EEeCCCeEEEEEcCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCC
Q 005656 310 TVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPN 387 (685)
Q Consensus 310 ~~~~dg~I~i~d~~~~~~~~~-~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spd 387 (685)
+|..-+.+..||+++++.... +.+..+.|+++..+|.+++|+++|-|..|||+|+.+.+++..+...+.++++.+.++
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 999999999999999998877 889999999999999999999999999999999999888887777777877777553
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=1.3e-14 Score=143.14 Aligned_cols=231 Identities=13% Similarity=0.185 Sum_probs=155.9
Q ss_pred eeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEe-----cCCCEEEEEeCCCceEEEEeec
Q 005656 49 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY-----ANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 49 V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~-----~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
+....++-.|.+|+-.-. ..+.+|++..+....+.+....-.....+|-.|. |++--++.+-.-|.+.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 444444555666655432 3688888875433323332222223334455552 3566788888888898888754
Q ss_pred CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656 124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 203 (685)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 203 (685)
.+..+.+... ..-...
T Consensus 205 ~~~sklfne~----------------------------------------------------------------r~i~kt 220 (636)
T KOG2394|consen 205 FEVSKLFNEE----------------------------------------------------------------RLINKS 220 (636)
T ss_pred hHHHHhhhhc----------------------------------------------------------------cccccc
Confidence 2221111100 002346
Q ss_pred CeEEEEEccC-CCEEEEEecCCcEEEEECCCCccc--cccc------------------cccccccCCCCcCEEEEEEcC
Q 005656 204 AVKACTISAC-GNFAVLGTAGGWIERFNLQSGISR--GSYL------------------DMSERSNYAHNGEVVGVACDS 262 (685)
Q Consensus 204 ~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~--~~~~------------------~~~~~~~~~h~~~v~~l~~~~ 262 (685)
.++|+.|-|. ...+++...+|.+++||..-.... ..+. ..+.....--.+.|..++|+|
T Consensus 221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~ 300 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP 300 (636)
T ss_pred ceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC
Confidence 7889998884 456777888899999976311000 0000 000001111245789999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEE
Q 005656 263 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF 341 (685)
Q Consensus 263 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l 341 (685)
||++||+.+.||.++|+|+.+.+++..+..- +...|++|+|||++|++|+.|.-|.||.+..++.+..-.||.+.|+.+
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~V 380 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVV 380 (636)
T ss_pred CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeE
Confidence 9999999999999999999998877665543 789999999999999999999999999999999999999999999999
Q ss_pred EEc
Q 005656 342 CFS 344 (685)
Q Consensus 342 ~~s 344 (685)
+|.
T Consensus 381 aFD 383 (636)
T KOG2394|consen 381 AFD 383 (636)
T ss_pred eec
Confidence 997
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=143.55 Aligned_cols=211 Identities=17% Similarity=0.259 Sum_probs=153.8
Q ss_pred EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE-----ccCCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656 172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-----SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER 246 (685)
Q Consensus 172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~ 246 (685)
.|-.-...+++|+++........+..........+|-+| .+.+--+++|-..|.|.++|.........+..
T Consensus 138 lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne---- 213 (636)
T KOG2394|consen 138 LCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNE---- 213 (636)
T ss_pred EEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhh----
Confidence 344455677888877532222222111122233334444 46778899999999999999887444333321
Q ss_pred ccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCC--------------c--------------eEEEee-cCCce
Q 005656 247 SNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGR--------------D--------------LKSRWE-VGCSL 296 (685)
Q Consensus 247 ~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~--------------~--------------~~~~~~-~~~~i 296 (685)
...-.+..|+++.|-|.+. .++.+-.+|.+++||..-. . ++..+. ....|
T Consensus 214 ~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~i 293 (636)
T KOG2394|consen 214 ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSI 293 (636)
T ss_pred cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccc
Confidence 1113447899999998654 5566668999999975311 0 111111 12578
Q ss_pred eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec
Q 005656 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD 376 (685)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~ 376 (685)
..++|+|||++||+.+.||.+||||..+.+++..++.--+...|++|||||+||++|++|--|.||.+..++.+..-+.|
T Consensus 294 n~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred cceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence 89999999999999999999999999999888888877888999999999999999999999999999999999988877
Q ss_pred cc-eEEEEEcC
Q 005656 377 VS-ITALSLSP 386 (685)
Q Consensus 377 ~~-v~~v~~sp 386 (685)
.. |..|+|.|
T Consensus 374 kSWVs~VaFDp 384 (636)
T KOG2394|consen 374 KSWVSVVAFDP 384 (636)
T ss_pred ccceeeEeecc
Confidence 76 99999983
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1e-13 Score=147.13 Aligned_cols=232 Identities=15% Similarity=0.130 Sum_probs=157.6
Q ss_pred cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC---CCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
.|.+||.+.. ..+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +.
T Consensus 183 ~l~~~d~dg~-----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~-------------- 242 (435)
T PRK05137 183 RLAIMDQDGA-----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG-------------- 242 (435)
T ss_pred EEEEECCCCC-----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee--------------
Confidence 5666665432 22334567889999999999999888764 4679999987664321 10
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG 224 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg 224 (685)
.....+...+|+|+|+.++.. +.+|
T Consensus 243 ------------------------------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 243 ------------------------------------------------------NFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred ------------------------------------------------------cCCCcccCcEECCCCCEEEEEEecCC
Confidence 223455678999999987654 4444
Q ss_pred --cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCceEEEeecCCceeEE
Q 005656 225 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKI 299 (685)
Q Consensus 225 --~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~i~~~ 299 (685)
.|++||+.++...... .+........|+|+|+.++..+. +| .|++||+.++...........+...
T Consensus 269 ~~~Iy~~d~~~~~~~~Lt---------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~ 339 (435)
T PRK05137 269 NTDIYTMDLRSGTTTRLT---------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP 339 (435)
T ss_pred CceEEEEECCCCceEEcc---------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence 4888899887654321 44555677899999998887763 33 6888898877665544444556778
Q ss_pred EEeecCCEEEEEeCC---CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCcee
Q 005656 300 VYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD------GSLRIWDVILARQI 370 (685)
Q Consensus 300 ~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D------g~I~iwd~~~~~~i 370 (685)
.|+|+|+.|+....+ ..|.+||+.++. .+.+. ....+....|+|||++|+..+.+ ..++++|+..+..
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~- 416 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE- 416 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-
Confidence 899999988877643 368889986554 33343 23356788999999998865543 2578888766544
Q ss_pred eEEeeccceEEEEEcC
Q 005656 371 DAIHVDVSITALSLSP 386 (685)
Q Consensus 371 ~~~~~~~~v~~v~~sp 386 (685)
..+.....+...+|+|
T Consensus 417 ~~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 417 REVPTPGDASDPAWSP 432 (435)
T ss_pred EEccCCCCccCcccCC
Confidence 4444444467777776
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=9.4e-14 Score=147.16 Aligned_cols=234 Identities=13% Similarity=0.113 Sum_probs=158.0
Q ss_pred CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC---CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEe
Q 005656 25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 101 (685)
Q Consensus 25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~ 101 (685)
..|.+||....... .+. .|...+.+.+|+|||+.|+..+. +..|.+|++..+. .+.+. .+.+...+..|+
T Consensus 184 ~~l~i~D~~g~~~~-~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--~~~l~---~~~g~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGYNPQ-TIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--RELVA---SFRGINGAPSFS 256 (433)
T ss_pred EEEEEECCCCCCce-Eee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--EEEec---cCCCCccCceEC
Confidence 46999998655443 444 57778999999999998888764 3468888886552 12222 334445678999
Q ss_pred cCCCEEE-EEeCCC--ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCc
Q 005656 102 ANGRHIL-SAGQDR--AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 178 (685)
Q Consensus 102 ~~~~~l~-s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (685)
|||+.|+ +.+.+| .|.+||+.+++... +.
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt----------------------------------------------- 288 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT----------------------------------------------- 288 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-----------------------------------------------
Confidence 9998776 445555 47778876554211 10
Q ss_pred eEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CC--cEEEEECCCCccccccccccccccCCCCcCE
Q 005656 179 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GG--WIERFNLQSGISRGSYLDMSERSNYAHNGEV 255 (685)
Q Consensus 179 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v 255 (685)
.+.......+|+|+|+++++.+. +| .|+++|+.++...... .+....
T Consensus 289 ---------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt---------~~g~~~ 338 (433)
T PRK04922 289 ---------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT---------FQGNYN 338 (433)
T ss_pred ---------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee---------cCCCCc
Confidence 12223456799999999887764 44 4777787776543221 122334
Q ss_pred EEEEEcCCCCEEEEEECCC---eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEE
Q 005656 256 VGVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVR 329 (685)
Q Consensus 256 ~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~ 329 (685)
..++|+|+|++++..+.++ .|.+||+.+++.. .+..........|+|+|++++..+.+ +.++++++. +...+
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~ 416 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQ 416 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence 5689999999988765443 6999999887765 33333345567999999987776653 468888885 44566
Q ss_pred EEecCCCCeEEEEEcC
Q 005656 330 KFEGHTDRITDFCFSE 345 (685)
Q Consensus 330 ~~~~h~~~I~~l~~sp 345 (685)
.+..+.+.+...+|+|
T Consensus 417 ~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 417 RLVSADGEVREPAWSP 432 (433)
T ss_pred EcccCCCCCCCCccCC
Confidence 6666677788888887
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.9e-13 Score=126.94 Aligned_cols=172 Identities=15% Similarity=0.172 Sum_probs=131.2
Q ss_pred CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC-CCceEEEeecCC-ceeEEEE
Q 005656 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGC-SLVKIVY 301 (685)
Q Consensus 224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~-~i~~~~~ 301 (685)
..|.+||-.....+..+ ....+|.++.+.++ .+++. ..+.|++|.+. +.+.++.+.... |-.-+++
T Consensus 75 NkviIWDD~k~~~i~el---------~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL---------SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred ceEEEEecccCcEEEEE---------EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEee
Confidence 46899995555555444 56789999999876 34444 36899999998 556666555432 2223334
Q ss_pred eec--CCEEEEE-eCCCeEEEEEcCCCee--EEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEcCCCceeeEEee
Q 005656 302 HRV--NGLLATV-ADDLVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMDGS-LRIWDVILARQIDAIHV 375 (685)
Q Consensus 302 ~~~--~~~l~~~-~~dg~I~i~d~~~~~~--~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~-I~iwd~~~~~~i~~~~~ 375 (685)
.|. ..+||.- -.-|.|.|.|+...+. ...+.+|.+.|.+++.+-+|..+||+|..|+ |||||..+|+++..++.
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 443 3355543 3468999999987655 4678899999999999999999999999998 89999999999999974
Q ss_pred c---cceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 376 D---VSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 376 ~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
. ..|.+++|||+..+||+++..| +|+||..+.
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKg-TlHiF~l~~ 257 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKG-TLHIFSLRD 257 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCC-eEEEEEeec
Confidence 3 3499999999999999999665 999998654
No 236
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.63 E-value=3.5e-13 Score=132.68 Aligned_cols=316 Identities=15% Similarity=0.227 Sum_probs=213.2
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC---------------C
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---------------N 68 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D---------------~ 68 (685)
++..++|||.|. +|++....| |.+|+-..+..+..+. | ..|..+.|+|++++|.|-+.. +
T Consensus 34 p~~~~~~SP~G~-~l~~~~~~~-V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 34 PVAYVSESPLGT-YLFSEHAAG-VECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred chhheeecCcch-heehhhccc-eEEccccchhheeeee--c-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 578899999999 888776655 9999988877555654 4 468999999999999996543 3
Q ss_pred cEEEEEecCCCCCCceeEecccCCCC--Ce-EEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 69 SIKMWIFDTTDGDPRLLRFRSGHSAP--PL-CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 69 ~v~iWd~~~~~~~~~~~~~~~~h~~~--v~-~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
.+.+||..++ .++..+.+-..+ .+ -+.|+-+.++++-.. ...+.++++ ++... ...
T Consensus 109 ~~~vwd~~sg----~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~-~~p-------------- 167 (561)
T COG5354 109 NVFVWDIASG----MIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIE-EHP-------------- 167 (561)
T ss_pred ceeEEeccCc----eeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccc-cCc--------------
Confidence 5899999887 777777766666 55 678888877766542 345888876 22211 000
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE--EEE----
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF--AVL---- 219 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~---- 219 (685)
. .. -....+....++|.|+. ++.
T Consensus 168 --------~-----------------------------------------~~--lr~~gi~dFsisP~~n~~~la~~tPE 196 (561)
T COG5354 168 --------F-----------------------------------------KN--LRPVGILDFSISPEGNHDELAYWTPE 196 (561)
T ss_pred --------h-----------------------------------------hh--ccccceeeEEecCCCCCceEEEEccc
Confidence 0 00 11244556666665432 222
Q ss_pred -EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-----------CCCeEEEEECCCCceE
Q 005656 220 -GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-----------YHGDIKVWDFKGRDLK 287 (685)
Q Consensus 220 -g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-----------~dg~i~iwd~~~~~~~ 287 (685)
+...+.+++|.+..+....+.. -....-..+.|.+.|+++..-- ....++++++....+.
T Consensus 197 k~~kpa~~~i~sIp~~s~l~tk~--------lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~ 268 (561)
T COG5354 197 KLNKPAMVRILSIPKNSVLVTKN--------LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP 268 (561)
T ss_pred cCCCCcEEEEEEccCCCeeeeee--------eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc
Confidence 3456778888887655443321 1112234577888887654321 1356888888865555
Q ss_pred EEeecCCceeEEEEeecCCEEEEEe--CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEE
Q 005656 288 SRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIW 362 (685)
Q Consensus 288 ~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---g~I~iw 362 (685)
......++|...+|.|.++.+++.+ .+-.+.++|++.. .. +......=+.+.|||.++|++.++-| |.|-+|
T Consensus 269 V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~ 345 (561)
T COG5354 269 VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIF 345 (561)
T ss_pred eeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEe
Confidence 4445578999999999999666654 6778999999866 32 33445566778999999999998755 679999
Q ss_pred EcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC-----CCeEEEEEcC
Q 005656 363 DVILARQIDAIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVNR 407 (685)
Q Consensus 363 d~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d-----~~~I~lW~~~ 407 (685)
|....-.+..-......+-+.|+|||.++.++... ++.|.||+.-
T Consensus 346 ~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 346 DPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred ccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 97755444322233346677899999998887532 3589999853
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.1e-13 Score=144.01 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=155.1
Q ss_pred CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC---CcEEEEEecCCCCCCceeEecccCCCCCeEEEEe
Q 005656 25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 101 (685)
Q Consensus 25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D---~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~ 101 (685)
..|.+||.... ....+. .+...+.+.+|+|||+.|+..+.+ ..|.+||+.++. ...+. ...+.+.+..|+
T Consensus 176 ~~L~~~D~dG~-~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--~~~l~---~~~g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDADGQ-NAQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--RRVVA---NFKGSNSAPAWS 248 (427)
T ss_pred cEEEEECCCCC-CceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--EEEee---cCCCCccceEEC
Confidence 46777787543 333444 577889999999999988877643 358888887652 12222 233456688999
Q ss_pred cCCCEEE-EEeCCCceEEEEeecCc-eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656 102 ANGRHIL-SAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 179 (685)
Q Consensus 102 ~~~~~l~-s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (685)
|||+.|+ +.+.+|...+|.+.... ....+.
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt------------------------------------------------ 280 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSGLRRLT------------------------------------------------ 280 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCcEECC------------------------------------------------
Confidence 9998886 56778887777654211 111110
Q ss_pred EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEE--ECCCCccccccccccccccCCCCcCEE
Q 005656 180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERF--NLQSGISRGSYLDMSERSNYAHNGEVV 256 (685)
Q Consensus 180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~~~--d~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (685)
.+........|+|+|+.++..+. +|...+| ++.++...... .+.....
T Consensus 281 --------------------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt---------~~g~~~~ 331 (427)
T PRK02889 281 --------------------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT---------FTGSYNT 331 (427)
T ss_pred --------------------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe---------cCCCCcC
Confidence 12233456789999998887654 4555555 44454432211 1122334
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC---eEEEEEcCCCeeEEE
Q 005656 257 GVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRK 330 (685)
Q Consensus 257 ~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~I~i~d~~~~~~~~~ 330 (685)
..+|+|+|++++..+.++ .|.+||+.+++..... .........|+|+|+.|+.++.++ .+++.++ +++..+.
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~ 409 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQR 409 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEE
Confidence 678999999998777554 6999999988755433 333456789999999888877544 4666676 4666667
Q ss_pred EecCCCCeEEEEEcCC
Q 005656 331 FEGHTDRITDFCFSED 346 (685)
Q Consensus 331 ~~~h~~~I~~l~~spd 346 (685)
+..+.+.+...+|+|-
T Consensus 410 l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 410 LSVQGGDVREPSWGPF 425 (427)
T ss_pred eecCCCCCCCCccCCC
Confidence 7777788888899873
No 238
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=7.1e-12 Score=119.36 Aligned_cols=271 Identities=14% Similarity=0.245 Sum_probs=188.8
Q ss_pred CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecC-ceeeEechhhHHHHHhhc
Q 005656 67 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQD-QQSRELSQRHVAKRARKL 142 (685)
Q Consensus 67 D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~ 142 (685)
+.-|.+|++++..+....+.. ..+.+.++-++|+|++++|.++..+ |.|-.|.+... .....+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~---------- 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR---------- 83 (346)
T ss_pred CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec----------
Confidence 567999999977665444433 3567788999999999999988654 66777766542 11111110
Q ss_pred cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-
Q 005656 143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT- 221 (685)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~- 221 (685)
......+.+.++++++|++++++.
T Consensus 84 -------------------------------------------------------~~~~g~~p~yvsvd~~g~~vf~AnY 108 (346)
T COG2706 84 -------------------------------------------------------QTLPGSPPCYVSVDEDGRFVFVANY 108 (346)
T ss_pred -------------------------------------------------------cccCCCCCeEEEECCCCCEEEEEEc
Confidence 002233348899999999988774
Q ss_pred cCCcEEEEECCC-CccccccccccccccCCCCcC----------EEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceEE-
Q 005656 222 AGGWIERFNLQS-GISRGSYLDMSERSNYAHNGE----------VVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLKS- 288 (685)
Q Consensus 222 ~dg~i~~~d~~~-~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~- 288 (685)
..|.|.++-++. |....... ...|.+. +....++|++++++++.. -..|.+|++..+++..
T Consensus 109 ~~g~v~v~p~~~dG~l~~~v~------~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 109 HSGSVSVYPLQADGSLQPVVQ------VVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred cCceEEEEEcccCCcccccee------eeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence 568999999976 33322211 1133333 788899999999998873 3479999999776543
Q ss_pred ---EeecCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCC-eeEEEEec---------CCCCeEEEEEcCCCCEEEEEe
Q 005656 289 ---RWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVAL-RMVRKFEG---------HTDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 289 ---~~~~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~-~~~~~~~~---------h~~~I~~l~~spdg~~l~s~s 354 (685)
.+..++....+.|+|++++.++.++ +++|.+|..... ..+..++. -.....+|..+|||++|.++.
T Consensus 183 ~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 183 DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 2344578899999999998777665 889999998873 22333321 234577899999999999875
Q ss_pred -CCCcEEEEEcCCC-ceeeEE---eeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCCC
Q 005656 355 -MDGSLRIWDVILA-RQIDAI---HVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCM 409 (685)
Q Consensus 355 -~Dg~I~iwd~~~~-~~i~~~---~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~ 409 (685)
....|-+|.+... ..+..+ ..+.. .+.+.|+|+|++|++++.++..|.+|.....
T Consensus 263 Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 263 RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 2346888887642 223322 23334 8999999999999999999989999975443
No 239
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=5.3e-13 Score=132.39 Aligned_cols=314 Identities=13% Similarity=0.173 Sum_probs=208.2
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC-----------CCcEEEEE
Q 005656 6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-----------DNSIKMWI 74 (685)
Q Consensus 6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-----------D~~v~iWd 74 (685)
|-+.|||-|. +|+|-..-| |.+|--++-..++.+. |. .|.-+.|||+.++|+|-+. ...++|||
T Consensus 214 tyv~wSP~GT-YL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGT-YLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCce-EEEEEeccc-eeeecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 5689999999 999987766 8999877766666664 65 5899999999999999653 25799999
Q ss_pred ecCCCCCCceeEeccc--CCCCC-eEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656 75 FDTTDGDPRLLRFRSG--HSAPP-LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 151 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~--h~~~v-~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (685)
+.++ .+.+.+.. ....+ .-..||.|+++++-... .+|.||+...-....
T Consensus 289 I~tG----~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld----------------------- 340 (698)
T KOG2314|consen 289 IATG----LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD----------------------- 340 (698)
T ss_pred cccc----chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec-----------------------
Confidence 9988 44444333 12222 34689999999987776 458888764321110
Q ss_pred CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-----CcE
Q 005656 152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----GWI 226 (685)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i 226 (685)
...-....|....|+|.++.|+.-+.. ..+
T Consensus 341 ---------------------------------------------~Kslki~gIr~FswsP~~~llAYwtpe~~~~parv 375 (698)
T KOG2314|consen 341 ---------------------------------------------KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARV 375 (698)
T ss_pred ---------------------------------------------ccccCCccccCcccCCCcceEEEEcccccCCcceE
Confidence 000224557777788877776653321 245
Q ss_pred EEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE----------CCCeEEEEECCCC-ceEEEeecCCc
Q 005656 227 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG----------YHGDIKVWDFKGR-DLKSRWEVGCS 295 (685)
Q Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~~-~~~~~~~~~~~ 295 (685)
.+..+.+++.+++.. -|+-.=..+.|-.+|.+|+.-- .-..+.|+.++.. -++........
T Consensus 376 tL~evPs~~~iRt~n--------lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 376 TLMEVPSKREIRTKN--------LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred EEEecCccceeeecc--------ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 555666555544322 2333333456666777665421 1123556666543 34556667788
Q ss_pred eeEEEEeecCCEEEEEeC---CCeEEEEEcCC----CeeEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcC
Q 005656 296 LVKIVYHRVNGLLATVAD---DLVIRLFDVVA----LRMVRKFEGHTDRITDFCFSEDGKWLLSSG---MDGSLRIWDVI 365 (685)
Q Consensus 296 i~~~~~~~~~~~l~~~~~---dg~I~i~d~~~----~~~~~~~~~h~~~I~~l~~spdg~~l~s~s---~Dg~I~iwd~~ 365 (685)
+...+|-|.|+.+++-+. ..++.+|.+++ .+.+..+.. ...+.+.|+|.|++++.+. ..|.+.++|..
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 999999999997776554 35788888773 234444442 4467899999999998764 57889999987
Q ss_pred CCceeeEE-eeccceEEEEEcCCCCeEEEEEeCC-----CeEEEEEcC
Q 005656 366 LARQIDAI-HVDVSITALSLSPNMDVLATAHVDQ-----NGVYLWVNR 407 (685)
Q Consensus 366 ~~~~i~~~-~~~~~v~~v~~spdg~~Lat~~~d~-----~~I~lW~~~ 407 (685)
-..+...- ..|...+.+.|.|.|+|++|++.-. ++.++|+.+
T Consensus 526 ~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 526 YADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred hhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 54443332 2355588999999999999987542 366777643
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.7e-13 Score=142.84 Aligned_cols=233 Identities=12% Similarity=0.132 Sum_probs=157.7
Q ss_pred CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC---CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEe
Q 005656 25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 101 (685)
Q Consensus 25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~ 101 (685)
..|.+||...... ..+. .|...+.+.+|+|||+.|+..+. +..|.+|++.++. . ..+..+.+.+...+|+
T Consensus 182 ~~l~~~d~dg~~~-~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~----~-~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ----R-ELVGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCCc-EEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc----E-EEeecCCCcccCcEEC
Confidence 3789999865544 3444 68889999999999998887653 4679999887652 1 2233456677889999
Q ss_pred cCCCEEE-EEeCCCc--eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCc
Q 005656 102 ANGRHIL-SAGQDRA--FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 178 (685)
Q Consensus 102 ~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (685)
|||+.|+ +.+.++. |.+||+.++... .+.
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt----------------------------------------------- 286 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT----------------------------------------------- 286 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceE-Ecc-----------------------------------------------
Confidence 9998875 5555665 555566544321 111
Q ss_pred eEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CC--cEEEEECCCCccccccccccccccCCCCcCE
Q 005656 179 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GG--WIERFNLQSGISRGSYLDMSERSNYAHNGEV 255 (685)
Q Consensus 179 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v 255 (685)
.+.......+|+|+|+.++..+. +| .|+++|+.++...... .+.+.+
T Consensus 287 ---------------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---------~~~~~~ 336 (435)
T PRK05137 287 ---------------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---------FGGGRY 336 (435)
T ss_pred ---------------------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---------cCCCcc
Confidence 22333456799999999888764 33 6888898766543322 234456
Q ss_pred EEEEEcCCCCEEEEEECC---CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC------CeEEEEEcCCCe
Q 005656 256 VGVACDSTNTLMISAGYH---GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD------LVIRLFDVVALR 326 (685)
Q Consensus 256 ~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~I~i~d~~~~~ 326 (685)
....|+|+|+.|+..+.+ ..|.+||+.++.. ..+.....+....|+|||+.|+..+.+ ..++++|+..+.
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 678899999999877643 3688889865543 334334456788999999988776543 368888887665
Q ss_pred eEEEEecCCCCeEEEEEcC
Q 005656 327 MVRKFEGHTDRITDFCFSE 345 (685)
Q Consensus 327 ~~~~~~~h~~~I~~l~~sp 345 (685)
. +.+. ..+.+...+|+|
T Consensus 416 ~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 416 E-REVP-TPGDASDPAWSP 432 (435)
T ss_pred e-EEcc-CCCCccCcccCC
Confidence 4 4444 344567778877
No 241
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=7.8e-15 Score=144.82 Aligned_cols=225 Identities=21% Similarity=0.272 Sum_probs=155.4
Q ss_pred eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCc
Q 005656 38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRA 115 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~ 115 (685)
...+. ||.+.|+|++|+.+|.+|++||.|-.+.|||.-... .+.....||.+.|.++.|.|. .+.+++|..|..
T Consensus 43 E~eL~-GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K---llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 43 EAELT-GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK---LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhhc-cccceecceeecCCCCEEeecCCcceEEeecchhcc---eeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 34555 999999999999999999999999999999876441 333445799999999999994 678999999999
Q ss_pred eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656 116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 195 (685)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 195 (685)
|+++|+...+....
T Consensus 119 i~lfdl~~~~~~~~------------------------------------------------------------------ 132 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGM------------------------------------------------------------------ 132 (758)
T ss_pred EEEEeccccccccc------------------------------------------------------------------
Confidence 99999864321100
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCC
Q 005656 196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG 274 (685)
Q Consensus 196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg 274 (685)
.+....+ ++.| ..|...|..++..|++ ..+.+++.||
T Consensus 133 ----d~~~~~~-------------------~~~~-------------------~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 133 ----DHGMEET-------------------TRCW-------------------SCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred ----ccCccch-------------------hhhh-------------------hhhhhhhhheecCCCCCceEEEecCCc
Confidence 0000000 0111 1677777788887877 6788888888
Q ss_pred eEEEEECCCCceE-EEe-------e---cCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCC--------C---------
Q 005656 275 DIKVWDFKGRDLK-SRW-------E---VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVA--------L--------- 325 (685)
Q Consensus 275 ~i~iwd~~~~~~~-~~~-------~---~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~--------~--------- 325 (685)
+|+-+|++....- ... . .--...++.++|... +||+|+.|-..++||.+. +
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~ 250 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKD 250 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcc
Confidence 8888888752110 000 0 013467888898765 899999999999999431 1
Q ss_pred -eeEEEEe-cCC--------C---CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656 326 -RMVRKFE-GHT--------D---RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 374 (685)
Q Consensus 326 -~~~~~~~-~h~--------~---~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~ 374 (685)
.+++.|. +|. . .++-++|+|+|.-|+..-..-.|+++|+..++....+.
T Consensus 251 ~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 251 CRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 1233332 232 1 15677899999765544444569999999887665543
No 242
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.58 E-value=9.1e-11 Score=114.64 Aligned_cols=213 Identities=13% Similarity=0.133 Sum_probs=157.7
Q ss_pred EEcCCceEEEEEcCccccCceeec-CCCCCCC------CeEEEE-Ecc-CCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656 173 CHMDTAQAYVWRLQNFVLGEHILR-PCPENPT------AVKACT-ISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 173 ~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~------~v~~~~-~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
.-...+.+++++..+..+.+.-+. +...... +..-+. |++ +|++++..+ .|...+.+...+-.+..
T Consensus 282 vFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv---- 356 (668)
T COG4946 282 VFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQV---- 356 (668)
T ss_pred EEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEc----
Confidence 334556788888776655443322 1110111 111111 333 566666655 46677776665544432
Q ss_pred cccccCCCCcCEEEEEEcCCCCEEEEEECCC-eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 322 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~ 322 (685)
+|.+.|.-..+..+++-++.|..|| .+-++|..+++.......-+.|.++..+++|+.++++.....+.++|+
T Consensus 357 ------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi 430 (668)
T COG4946 357 ------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI 430 (668)
T ss_pred ------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence 7888899888888888899999999 899999999988777777799999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEe
Q 005656 323 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV 396 (685)
Q Consensus 323 ~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg----~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~ 396 (685)
+++.....-+...+-|+.++|||+++|+|-+--+| .|+++|+..++........+.=.+-+|.|||++|..-+.
T Consensus 431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 99986555556677899999999999999886655 699999999888776655555667789999998887664
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=3.3e-13 Score=125.08 Aligned_cols=147 Identities=20% Similarity=0.353 Sum_probs=109.6
Q ss_pred EEEEEcCCCCEEEEEEC----------CCeEEEEECCC-CceEEEee--cCCceeEEEEeecCCEEEEE--eCCCeEEEE
Q 005656 256 VGVACDSTNTLMISAGY----------HGDIKVWDFKG-RDLKSRWE--VGCSLVKIVYHRVNGLLATV--ADDLVIRLF 320 (685)
Q Consensus 256 ~~l~~~~~~~~l~s~s~----------dg~i~iwd~~~-~~~~~~~~--~~~~i~~~~~~~~~~~l~~~--~~dg~I~i~ 320 (685)
..+.|+++|.+|+.-.. -|...+|.++. ......+. ..++|.+++|+|+|+.+|+. ..+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46788888877654332 12345555532 23334443 34679999999999977655 356799999
Q ss_pred EcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC
Q 005656 321 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 321 d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~---Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d 397 (685)
|++ ++.+..+. ...++.+.|||+|++|++|+. .|.|.+||+.+.+.+....+. .++.++|||||++++++...
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 997 66666664 567889999999999999874 467999999988888776644 47899999999999999864
Q ss_pred -----CCeEEEEEc
Q 005656 398 -----QNGVYLWVN 406 (685)
Q Consensus 398 -----~~~I~lW~~ 406 (685)
+++++||+.
T Consensus 165 ~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 165 PRLRVDNGFKIWSF 178 (194)
T ss_pred cceeccccEEEEEe
Confidence 468999984
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=6.2e-13 Score=123.25 Aligned_cols=158 Identities=18% Similarity=0.261 Sum_probs=115.3
Q ss_pred eEEEEEccCCCEEEEEec----------CCcEEEEECCCCc-cccccccccccccCCCCcCEEEEEEcCCCCEEEEE--E
Q 005656 205 VKACTISACGNFAVLGTA----------GGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--G 271 (685)
Q Consensus 205 v~~~~~s~~g~~l~~g~~----------dg~i~~~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--s 271 (685)
-..+.|+++|++|++-.. -|...+|.++... ....+ .....++|.+++|+|+|+.++++ .
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-------~l~~~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-------ELKKEGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-------eccCCCceEEEEECcCCCEEEEEEcc
Confidence 356789999998876544 1334455443221 22221 11345679999999999887554 3
Q ss_pred CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC
Q 005656 272 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 348 (685)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~ 348 (685)
.++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++. .|.|.+||+++.+.+..+. |. .++.++|||||+
T Consensus 81 ~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr 156 (194)
T PF08662_consen 81 MPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGR 156 (194)
T ss_pred CCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCC
Confidence 67799999997 55555554 467789999999999999874 4679999999999888775 33 478999999999
Q ss_pred EEEEEeC------CCcEEEEEcCCCceeeEEe
Q 005656 349 WLLSSGM------DGSLRIWDVILARQIDAIH 374 (685)
Q Consensus 349 ~l~s~s~------Dg~I~iwd~~~~~~i~~~~ 374 (685)
+|++++. |+.++||+.. |+++....
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9998864 7889999984 66665543
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.6e-13 Score=129.33 Aligned_cols=212 Identities=17% Similarity=0.290 Sum_probs=158.1
Q ss_pred EEEEEeCCCcEEEEeCCCCe----eeEEeecccccCeeEEEEeCCCc-EEEEecCC--CcEEEEEecCCCCCCceeEec-
Q 005656 17 LLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFANEP-VLMSASAD--NSIKMWIFDTTDGDPRLLRFR- 88 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D--~~v~iWd~~~~~~~~~~~~~~- 88 (685)
.|++|-.+|.+.+|..+.+- ....+. -..++..+.-++..+ ++++||.. +.+++||+......+.-....
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn 194 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN 194 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC
Confidence 57788889999999988443 222332 235677777777666 55558888 889999987652111100000
Q ss_pred --ccC--CCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 89 --SGH--SAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 89 --~~h--~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
-+- .-.++++.|.+. ...|++++.-+.+|+||+..++.... .|
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~--------------------------~f----- 243 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA--------------------------QF----- 243 (412)
T ss_pred ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee--------------------------Ee-----
Confidence 001 124578889887 78999999999999999976543211 11
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
.....+++++...|.|+++++|...|.+..||++.+........
T Consensus 244 ------------------------------------d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k 287 (412)
T KOG3881|consen 244 ------------------------------------DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK 287 (412)
T ss_pred ------------------------------------ccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC
Confidence 13467899999999999999999999999999999998877432
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeec
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV 304 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~ 304 (685)
+-.+.|+++..+|.+.++++||.|..|+|+|+++.+++...-....++++.+.++
T Consensus 288 -------g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 -------GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred -------CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 8889999999999999999999999999999999888777666667777666543
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=6.3e-11 Score=113.00 Aligned_cols=302 Identities=14% Similarity=0.191 Sum_probs=199.7
Q ss_pred CCcEEEEeCCC--CeeeEEeecccccCeeEEEEeCCCcEEEEecC---CCcEEEEEecCCCCCCceeEecccCCCCCeEE
Q 005656 24 SGVISIWNLEK--RRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 98 (685)
Q Consensus 24 dg~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i 98 (685)
+.-|.+|++.+ ++.-......+.+.++-|+|+|+++.|.++.. +|.|-.|.++..++....+........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46699999874 33322222367888999999999999988755 57899999987666555555444455666999
Q ss_pred EEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCC
Q 005656 99 RFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 177 (685)
Q Consensus 99 ~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (685)
+++++|++++++.. .|.|.++-+..........+ ...+.+.
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~--------------------------------------~~~h~g~ 136 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ--------------------------------------VVKHTGS 136 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCcccccee--------------------------------------eeecCCC
Confidence 99999999999876 47888888765432221100 0000000
Q ss_pred ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656 178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 256 (685)
Q Consensus 178 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (685)
+.+ .+.....+.+..++|+++++++..-. -.|.+|++..|........ .......-+
T Consensus 137 -------------~p~----~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-----~v~~G~GPR 194 (346)
T COG2706 137 -------------GPH----ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-----EVKPGAGPR 194 (346)
T ss_pred -------------CCC----ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-----ccCCCCCcc
Confidence 000 00223347788999999999887654 5799999997766543321 113445678
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEECCCC--ceEE--E-------eecCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 005656 257 GVACDSTNTLMISAG-YHGDIKVWDFKGR--DLKS--R-------WEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV 323 (685)
Q Consensus 257 ~l~~~~~~~~l~s~s-~dg~i~iwd~~~~--~~~~--~-------~~~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~ 323 (685)
.|.|+|++++..... .+++|.+|..... +... . +........+..+++|++|+++.. ...|.+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999999999876665 7899999998863 2221 1 122366788999999999988754 3478888775
Q ss_pred C--Cee--EEEEecCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcC--CCceeeEEe-eccc-eEEEEEc
Q 005656 324 A--LRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI--LARQIDAIH-VDVS-ITALSLS 385 (685)
Q Consensus 324 ~--~~~--~~~~~~h~~~I~~l~~spdg~~l~s~s~D-g~I~iwd~~--~~~~i~~~~-~~~~-v~~v~~s 385 (685)
. +++ +.....+.....+..|+|+|++|+++..+ ..|.+|.+. +|++-.... ...+ ..||.|.
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 4 332 22223344457899999999999998854 468899775 565543333 1222 5566664
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.55 E-value=6.1e-13 Score=124.62 Aligned_cols=329 Identities=14% Similarity=0.157 Sum_probs=215.1
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEe-CCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 81 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~ 81 (685)
+.|++...-|-.. -+++.+.|.+++||- .+.++.-..+......+++++.+.+....|+.|-..|++.-+.+...-..
T Consensus 25 d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk 103 (404)
T KOG1409|consen 25 DDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK 103 (404)
T ss_pred hhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence 3455555555444 577889999999994 45566656665455688999999999999999999999998877654444
Q ss_pred CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
....+....|..+|..+-|+-...++++++.|..+.---.+.+.....+.. .....
T Consensus 104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~------------------------~~~~t 159 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF------------------------ETPAS 159 (404)
T ss_pred cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe------------------------eccCC
Confidence 456666778999999999998889999999998876555554443222110 00000
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~ 241 (685)
....+.. ....+...+.+..-++..... ..+....++...+++++|.+....+.+|..|..+.+||+.-+......
T Consensus 160 ~~~~d~~-~~fvGd~~gqvt~lr~~~~~~--~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e- 235 (404)
T KOG1409|consen 160 ALQFDAL-YAFVGDHSGQITMLKLEQNGC--QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE- 235 (404)
T ss_pred CCceeeE-EEEecccccceEEEEEeecCC--ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee-
Confidence 0000111 222233333333333332222 223334488999999999999999999999999999999766554432
Q ss_pred cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE-----E-------------------------ee
Q 005656 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----R-------------------------WE 291 (685)
Q Consensus 242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----~-------------------------~~ 291 (685)
..+|...|..+...+--+.+++++.||.|.+|+++...... . ..
T Consensus 236 ------l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~ 309 (404)
T KOG1409|consen 236 ------LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQ 309 (404)
T ss_pred ------eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhh
Confidence 23899999999988888899999999999999987542210 0 00
Q ss_pred cC----CceeEEEEeecCCEEEEEeCCCeEEEEEcCC-------CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005656 292 VG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 360 (685)
Q Consensus 292 ~~----~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~-------~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~ 360 (685)
++ +...+...+.+.....+-+..-.+|+.|.-. ..++..+..-...|+.|.+-.+-.+|+|+|.|..|+
T Consensus 310 h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~ 389 (404)
T KOG1409|consen 310 HHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIK 389 (404)
T ss_pred hhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEE
Confidence 00 1112222222222222333334555554321 123444433334599999988888999999999999
Q ss_pred EEEcCC
Q 005656 361 IWDVIL 366 (685)
Q Consensus 361 iwd~~~ 366 (685)
|||+.+
T Consensus 390 iwd~~~ 395 (404)
T KOG1409|consen 390 IWDVRS 395 (404)
T ss_pred EEechh
Confidence 999864
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=4.8e-12 Score=134.54 Aligned_cols=204 Identities=14% Similarity=0.110 Sum_probs=137.9
Q ss_pred ccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656 89 SGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 165 (685)
Q Consensus 89 ~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (685)
..+...+.+.+|+|||++|+.++.+ ..|++||+.+++.....
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~----------------------------------- 230 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA----------------------------------- 230 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-----------------------------------
Confidence 3566678899999999999987654 46888888665432111
Q ss_pred CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC--cEEEEECCCCcccccccc
Q 005656 166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLD 242 (685)
Q Consensus 166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg--~i~~~d~~~~~~~~~~~~ 242 (685)
.....+.+++|+|+|+.+++. +.++ .|++||+.++......
T Consensus 231 ----------------------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~-- 274 (417)
T TIGR02800 231 ----------------------------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT-- 274 (417)
T ss_pred ----------------------------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECC--
Confidence 122345567899999987654 4343 5899999887543322
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC---e
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYH-G--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---V 316 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~ 316 (685)
.+........|+|+++.|+.++.. + .|+++|+.+++...............|+|+|++++.++.++ .
T Consensus 275 -------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 275 -------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred -------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence 333445567899999988776643 3 68888988776554443445667889999999999888776 8
Q ss_pred EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCceeeEE
Q 005656 317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAI 373 (685)
Q Consensus 317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg---~I~iwd~~~~~~i~~~ 373 (685)
|.+||+.++.. ..+... .......|+|||++|+.++.++ .+++.+. ++.....+
T Consensus 348 i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~ 404 (417)
T TIGR02800 348 IAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARL 404 (417)
T ss_pred EEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence 99999988654 333322 2345668999999998877654 3555553 34444444
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.52 E-value=2e-10 Score=114.41 Aligned_cols=266 Identities=14% Similarity=0.124 Sum_probs=170.0
Q ss_pred CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC----------CCcEEEEEecCCCCCCceeEecccC---
Q 005656 25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----------DNSIKMWIFDTTDGDPRLLRFRSGH--- 91 (685)
Q Consensus 25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----------D~~v~iWd~~~~~~~~~~~~~~~~h--- 91 (685)
|.|.+.|..+++.+..+..+.... .+ ++||++.|+.+.. +..|.+||..+. +.+..+.-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH----LPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC----cEEeEEccCCCc
Confidence 899999999999999998554433 34 9999997776655 789999999887 444333221
Q ss_pred ----CCCCeEEEEecCCCEEEEEe-C-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656 92 ----SAPPLCIRFYANGRHILSAG-Q-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 165 (685)
Q Consensus 92 ----~~~v~~i~~~~~~~~l~s~s-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (685)
......++++|||++++... . +..|.+.|+.+++...++..+.
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~------------------------------- 148 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD------------------------------- 148 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-------------------------------
Confidence 22345789999999999776 3 6899999999998877764210
Q ss_pred CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCcccccccccc
Q 005656 166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMS 244 (685)
Q Consensus 166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~ 244 (685)
...++. ...-..+..+.||..+.+.. .+|....=+.. .+.. .
T Consensus 149 -----------~~~vy~-------------------t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~------vf~~-~ 191 (352)
T TIGR02658 149 -----------CYHIFP-------------------TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE------VFHP-E 191 (352)
T ss_pred -----------CcEEEE-------------------ecCCccEEEeecCceEEEEecCCCceEEeeee------eecC-C
Confidence 000000 00011112223444333222 22321110000 0000 0
Q ss_pred ccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCC-----ceEEEeec--------CCceeEEEEeecCCEEEE
Q 005656 245 ERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGR-----DLKSRWEV--------GCSLVKIVYHRVNGLLAT 310 (685)
Q Consensus 245 ~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~--------~~~i~~~~~~~~~~~l~~ 310 (685)
...-...+ .+.+ +|++++.... |+|.+.|+... .....+.. ++...-++++++++.+++
T Consensus 192 --~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV 264 (352)
T TIGR02658 192 --DEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL 264 (352)
T ss_pred --ccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence 00001112 3345 7777766655 99999996543 22222211 133445999999998887
Q ss_pred Ee----------CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCceeeEE
Q 005656 311 VA----------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDGSLRIWDVILARQIDAI 373 (685)
Q Consensus 311 ~~----------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s-~Dg~I~iwd~~~~~~i~~~ 373 (685)
.. ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.+..+
T Consensus 265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 43 225899999999999998873 34789999999999 887666 6788999999999999887
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=7.4e-12 Score=125.06 Aligned_cols=308 Identities=13% Similarity=0.197 Sum_probs=193.1
Q ss_pred cEEEEEEccCCCCEEEEE-------e---CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656 4 AVTALAFSSDGQPLLASG-------A---SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 73 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg-------~---~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW 73 (685)
.++++-|||-|. +|.|= . ..-.+.+|+++++.....+....... .+..|+.|..+.+- -..+.+.+|
T Consensus 75 ~~~~L~fSP~g~-yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~ar-lv~nev~f~ 151 (566)
T KOG2315|consen 75 KTYDLLFSPKGN-YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAAR-LVSNEVQFY 151 (566)
T ss_pred eeeeeeeccccc-ccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhh-hhcceEEEE
Confidence 467899999998 66652 1 12457899999977666665333443 68999998764332 234689999
Q ss_pred EecCCCCCCceeEecccCCCCCeEEEEecCC--CEEEE-----EeCCCceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656 74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE 146 (685)
Q Consensus 74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (685)
+...... ... .-|...|+.+.++|.+ ..+++ .|.-+.|++|..........+...
T Consensus 152 ~~~~f~~---~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~k------------- 213 (566)
T KOG2315|consen 152 DLGSFKT---IQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANK------------- 213 (566)
T ss_pred ecCCccc---eee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhc-------------
Confidence 8876432 222 2357788999999863 23332 345567888876532221111100
Q ss_pred cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 005656 147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 226 (685)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 226 (685)
+....+.....|+-. ...+..++-+.-.+.=.+-+....+
T Consensus 214 -------------------------sFFkadkvqm~WN~~---------------gt~LLvLastdVDktn~SYYGEq~L 253 (566)
T KOG2315|consen 214 -------------------------SFFKADKVQMKWNKL---------------GTALLVLASTDVDKTNASYYGEQTL 253 (566)
T ss_pred -------------------------cccccceeEEEeccC---------------CceEEEEEEEeecCCCccccccceE
Confidence 000111222223211 1111122111111111122234468
Q ss_pred EEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE--ECCCeEEEEECCCCceEEEeecCCceeEEEEeec
Q 005656 227 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV 304 (685)
Q Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~ 304 (685)
++++++....+..+ ...++|.++.|+++++.++++ -.-..+.|+|++.. ++..+ ..++-+++-|+|.
T Consensus 254 yll~t~g~s~~V~L---------~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df-~egpRN~~~fnp~ 322 (566)
T KOG2315|consen 254 YLLATQGESVSVPL---------LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF-PEGPRNTAFFNPH 322 (566)
T ss_pred EEEEecCceEEEec---------CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC-CCCCccceEECCC
Confidence 88888733333332 567999999999999876554 36678999998743 33332 2367789999999
Q ss_pred CCEEEEEeCC---CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCceeeEEee
Q 005656 305 NGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM------DGSLRIWDVILARQIDAIHV 375 (685)
Q Consensus 305 ~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~------Dg~I~iwd~~~~~~i~~~~~ 375 (685)
|++++.++-+ |.+-|||+.+.+++..+.... -+-+.|+|||++++|++. |+.++||+. +|.++.....
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f 399 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMF 399 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhh
Confidence 9988887764 799999999999998887544 355789999999998864 678999996 5777666555
Q ss_pred ccceEEEEEcC
Q 005656 376 DVSITALSLSP 386 (685)
Q Consensus 376 ~~~v~~v~~sp 386 (685)
.+....+.|-|
T Consensus 400 ~sEL~qv~W~P 410 (566)
T KOG2315|consen 400 KSELLQVEWRP 410 (566)
T ss_pred hHhHhheeeee
Confidence 54566666655
No 251
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=7.8e-12 Score=127.54 Aligned_cols=288 Identities=14% Similarity=0.137 Sum_probs=207.1
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC-----------ceeEecccCCCCCeEEEEecCCCEEEEEeC
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP-----------RLLRFRSGHSAPPLCIRFYANGRHILSAGQ 112 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-----------~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~ 112 (685)
.......|++|+....+++.||.||.+++-.+.+..... ..-.++.||.+.|.-+.|+.+.+.|-+...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 345678899999999999999999999999887653211 112456899999999999999889999999
Q ss_pred CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCc
Q 005656 113 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 192 (685)
Q Consensus 113 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 192 (685)
+|-|.+|-+-.+.-..+...
T Consensus 92 ~GlIiVWmlykgsW~EEMiN------------------------------------------------------------ 111 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMIN------------------------------------------------------------ 111 (1189)
T ss_pred CceEEEEeeecccHHHHHhh------------------------------------------------------------
Confidence 99999998876653322210
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC
Q 005656 193 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 272 (685)
Q Consensus 193 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 272 (685)
....+.|.+++|+.+|..+.+.+.||.|.+=.+.....-..-. .......+.|++|.+.+..+-.
T Consensus 112 ------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL---------kg~~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 112 ------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL---------KGQLLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred ------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc---------chheccceeecccHHHHHhhhc
Confidence 0345678999999999999999999999887766544332211 1123457899999998888888
Q ss_pred CCeEEEEECCCCc-----eEEEee-------cCCceeEEEEe--------ecCCEEEEEeCCCeEEEEEcCCCeeEEEEe
Q 005656 273 HGDIKVWDFKGRD-----LKSRWE-------VGCSLVKIVYH--------RVNGLLATVADDLVIRLFDVVALRMVRKFE 332 (685)
Q Consensus 273 dg~i~iwd~~~~~-----~~~~~~-------~~~~i~~~~~~--------~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 332 (685)
+|.+.++|....- ...... .+..+..+.|. |+...++++..+|.+.|..-.+......+.
T Consensus 177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d 256 (1189)
T KOG2041|consen 177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD 256 (1189)
T ss_pred CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence 9999999976421 111111 11234445543 467799999999998887554432222222
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEE
Q 005656 333 GHTDRITDFCFSEDGKWLLSSGMD---------GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVY 402 (685)
Q Consensus 333 ~h~~~I~~l~~spdg~~l~s~s~D---------g~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~ 402 (685)
..-.|.++.|+++|..|+.++.| +.|.+|. +-|+.+.+++.++. |++++|-..|-.+|.+- |+ .|+
T Consensus 257 -tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-ds-fiy 332 (1189)
T KOG2041|consen 257 -TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DS-FIY 332 (1189)
T ss_pred -cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe-cc-eEE
Confidence 22568899999999999998864 2466665 67889999988777 99999998888877775 44 666
Q ss_pred EEEcCCCc
Q 005656 403 LWVNRCMF 410 (685)
Q Consensus 403 lW~~~~~~ 410 (685)
+=+.|+.|
T Consensus 333 fanIRP~y 340 (1189)
T KOG2041|consen 333 FANIRPEY 340 (1189)
T ss_pred EEeecccc
Confidence 55444443
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=1.5e-11 Score=115.28 Aligned_cols=275 Identities=16% Similarity=0.225 Sum_probs=181.1
Q ss_pred cccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC-CCCceeEecccCC------------CCCeEEEEecCC--CEEEE
Q 005656 45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-GDPRLLRFRSGHS------------APPLCIRFYANG--RHILS 109 (685)
Q Consensus 45 h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~~~~~h~------------~~v~~i~~~~~~--~~l~s 109 (685)
-.+-|.++.|...|.+|+||..+|.|.++.-+... +.......+..|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45678999999999999999999999998644332 2233444444453 468899999864 46777
Q ss_pred EeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccc
Q 005656 110 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 189 (685)
Q Consensus 110 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 189 (685)
.+.|.+|++|.+........-. .++
T Consensus 104 stNdktiKlWKi~er~~k~~~~------------------~~~------------------------------------- 128 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGY------------------NLP------------------------------------- 128 (433)
T ss_pred ecCCcceeeeeeeccccccccc------------------ccc-------------------------------------
Confidence 8889999999986543222000 000
Q ss_pred cCceeecCCCCCCCCeEEE---EEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCE
Q 005656 190 LGEHILRPCPENPTAVKAC---TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 266 (685)
Q Consensus 190 ~~~~~~~~~~~~~~~v~~~---~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 266 (685)
.......++++ .+.+....+.+. +++.+. .+|.--|.++.++.|...
T Consensus 129 --------~~~~~~~~~~lr~p~~~~~~~~vea~---------------prRv~a-------NaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 129 --------EEGPPGTITSLRLPVEGRHDLEVEAS---------------PRRVYA-------NAHTYHINSISVNSDKET 178 (433)
T ss_pred --------ccCCCCccceeeceeeccccceeeee---------------eeeecc-------ccceeEeeeeeecCccce
Confidence 00011111111 112222111111 112221 289999999999999998
Q ss_pred EEEEECCCeEEEEECCC-CceEEEeec---C-----CceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCee----EEEE-
Q 005656 267 MISAGYHGDIKVWDFKG-RDLKSRWEV---G-----CSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRM----VRKF- 331 (685)
Q Consensus 267 l~s~s~dg~i~iwd~~~-~~~~~~~~~---~-----~~i~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~----~~~~- 331 (685)
++++. |=.|.+|++.- .+....... . .-|++..|+|.. ++++..+..|+|++.|++...+ ...|
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 88774 77899999873 222222221 1 458888999965 4888888999999999984321 1111
Q ss_pred -----------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCceeeEEeeccc----------------eEEEE
Q 005656 332 -----------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVDVS----------------ITALS 383 (685)
Q Consensus 332 -----------~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~-~~~~i~~~~~~~~----------------v~~v~ 383 (685)
.+--..|.++.|+++|+|+++-+. -+|++||+. ..+++.++..|.. -..++
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 122346899999999999998764 579999994 5667776665321 35689
Q ss_pred EcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 384 LSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 384 ~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
|+.++.+++||+... .++++++.
T Consensus 337 ~sg~~~~v~TGsy~n-~frvf~~~ 359 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNN-VFRVFNLA 359 (433)
T ss_pred EcCCcceEecccccc-eEEEecCC
Confidence 999999999999885 89999743
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=1.6e-11 Score=130.52 Aligned_cols=187 Identities=15% Similarity=0.080 Sum_probs=136.1
Q ss_pred CCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCC--e
Q 005656 202 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHG--D 275 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg--~ 275 (685)
...+...+|+|+|++++.+... ..|++||+.++...... .+.+.+.+++|+|+++.|+.. +.++ .
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---------~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---------SFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------cCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 4457788899999999887654 47999999887553321 344566778999999877644 4444 5
Q ss_pred EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 005656 276 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 352 (685)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s 352 (685)
|++||+.++................|+|+|+.|+..+.. + .|+++|+.+++. ..+..+...+....|+|||++|+.
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEE
Confidence 999999887665544444445577899999988776543 2 688889887764 344445566788899999999998
Q ss_pred EeCCC---cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCC
Q 005656 353 SGMDG---SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN 399 (685)
Q Consensus 353 ~s~Dg---~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~ 399 (685)
++.++ .|.+||+.++.. ..+..........|+|||++|+.++.+++
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred EEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCCC
Confidence 88776 799999987654 33332333556789999999999888763
No 254
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=5.4e-11 Score=117.48 Aligned_cols=301 Identities=13% Similarity=0.166 Sum_probs=201.0
Q ss_pred cEEEEEEccCCCCEEEEEeC---------------CCcEEEEeCCCCeeeEEeecccccC--ee-EEEEeCCCcEEEEec
Q 005656 4 AVTALAFSSDGQPLLASGAS---------------SGVISIWNLEKRRLQSVIREAHDNA--II-SLHFFANEPVLMSAS 65 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~---------------dg~I~vwd~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~l~s~s 65 (685)
.|.-+.|||.|+ +|.|=+. ++.+.+||..++.++..+. +...+ .. -+.|+-+.+++|-.
T Consensus 73 ~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 73 DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred CceecccCcccc-eeeeeccCCccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhh-
Confidence 477889999999 8887543 2359999999999999887 55444 44 68899988877655
Q ss_pred CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC--CEEEE-----EeCCCceEEEEeecCceeeEechhhHHHH
Q 005656 66 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKR 138 (685)
Q Consensus 66 ~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 138 (685)
....+.|+++ +..-.......++ ...|....|+|.+ ..|+. .+.++++++|.+..+.....-.
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~------- 219 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN------- 219 (561)
T ss_pred ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-------
Confidence 3357899986 4322222222222 3457778888864 23332 3456677777765433322211
Q ss_pred HhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEE
Q 005656 139 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV 218 (685)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 218 (685)
.....-..+.|.+.|++++
T Consensus 220 -------------------------------------------------------------lfk~~~~qLkW~~~g~~ll 238 (561)
T COG5354 220 -------------------------------------------------------------LFKVSGVQLKWQVLGKYLL 238 (561)
T ss_pred -------------------------------------------------------------eEeecccEEEEecCCceEE
Confidence 0011123445666666654
Q ss_pred EEe-----------cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCc
Q 005656 219 LGT-----------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRD 285 (685)
Q Consensus 219 ~g~-----------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~ 285 (685)
+-. ....+++++++........ .-.++|...+|.|.++.+++++ .+..+.++|++..
T Consensus 239 ~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~---------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 239 VLVMTHTKSNKSYFGESNLYLLRITERSIPVEK---------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred EEEEEeeecccceeccceEEEEeecccccceec---------cccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 421 2245788888744333221 4578999999999988776554 7788999999876
Q ss_pred eEEEeecCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEE-EEecCCCCeEEEEEcCCCCEEEEEe------C
Q 005656 286 LKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSG------M 355 (685)
Q Consensus 286 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~-~~~~h~~~I~~l~~spdg~~l~s~s------~ 355 (685)
+...-....-..+.|+|.++++++++-| |.|-+||......+. .+.+.+ .+-+.|+|||.++.++. .
T Consensus 309 -l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~ 385 (561)
T COG5354 309 -LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRV 385 (561)
T ss_pred -eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCccccc
Confidence 4444445666788999999998887765 689999988765444 666544 34568999999888664 4
Q ss_pred CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 356 Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
|..|+|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 386 Dn~i~l~~v~g~~~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 386 DNSIKLWDVYGAKVF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CcceEEEEecCchhh-------hhhhccccCCcccceeeccCC
Confidence 788999998654332 567889999988887776553
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.1e-11 Score=129.11 Aligned_cols=169 Identities=13% Similarity=0.016 Sum_probs=111.0
Q ss_pred EEEEEccCCCEEEE-EecCCc--EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CC--eEEEE
Q 005656 206 KACTISACGNFAVL-GTAGGW--IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVW 279 (685)
Q Consensus 206 ~~~~~s~~g~~l~~-g~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg--~i~iw 279 (685)
....|+|+|+.++. ...+|. |+++|+.++...... .+.......+|+|+|+.++..+. ++ .|+++
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt---------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT---------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 35789999998875 455564 888898887654322 34445677899999998876653 33 57777
Q ss_pred ECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC-
Q 005656 280 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM- 355 (685)
Q Consensus 280 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~- 355 (685)
|+.+++..............+|+|+|++++..+.+ + .|.++|+.+++.. .+... .......|+|||++|+..+.
T Consensus 336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 336 NLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred ECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEec
Confidence 88777654432222333457899999988776553 3 5667888887643 33322 12234589999998886654
Q ss_pred CC--cEEEEEcCCCceeeEEeec-cceEEEEEcC
Q 005656 356 DG--SLRIWDVILARQIDAIHVD-VSITALSLSP 386 (685)
Q Consensus 356 Dg--~I~iwd~~~~~~i~~~~~~-~~v~~v~~sp 386 (685)
+| .+++++. +|.....+..+ ..+...+|||
T Consensus 414 ~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 414 QGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 33 3777786 56666656543 3477788887
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.3e-11 Score=129.48 Aligned_cols=217 Identities=14% Similarity=0.049 Sum_probs=141.4
Q ss_pred ccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656 89 SGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 165 (685)
Q Consensus 89 ~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (685)
..+...+....|+|||+.|+..+.+ ..|.+|++.+++.....
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~----------------------------------- 239 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT----------------------------------- 239 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-----------------------------------
Confidence 3567788999999999999877643 35777887665432111
Q ss_pred CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC--cEEEEECCCCcccccccc
Q 005656 166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLD 242 (685)
Q Consensus 166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg--~i~~~d~~~~~~~~~~~~ 242 (685)
.....+....|+|+|+.++.. ..+| .|++||+.++......
T Consensus 240 ----------------------------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt-- 283 (430)
T PRK00178 240 ----------------------------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVT-- 283 (430)
T ss_pred ----------------------------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcc--
Confidence 112234467899999988754 3444 6888999987654321
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--e
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--V 316 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~ 316 (685)
.+........|+|+|+.++..+. +| .|+++|+.+++...............|+|+|+.++....+ + .
T Consensus 284 -------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~ 356 (430)
T PRK00178 284 -------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFH 356 (430)
T ss_pred -------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceE
Confidence 34445567889999998876653 33 5888888877754433223334457899999988877653 2 5
Q ss_pred EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeEEeec-cceEEEEEcC
Q 005656 317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVD-VSITALSLSP 386 (685)
Q Consensus 317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---g~I~iwd~~~~~~i~~~~~~-~~v~~v~~sp 386 (685)
|.+||+.+++. +.+. +........|+|||++++.++.+ ..|.++++. |.....+..+ ..+...+|+|
T Consensus 357 l~~~dl~tg~~-~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 357 VAAQDLQRGSV-RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEEEECCCCCE-EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 88999988764 3333 22223356899999999876643 346777764 3333344333 3366777776
No 257
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=6e-10 Score=114.28 Aligned_cols=271 Identities=13% Similarity=0.172 Sum_probs=170.3
Q ss_pred EEEEEEccCCCCEEEEEeC----CCcEEEEeCCCC--ee--eEEeecccccCeeEEEEeCCCcEEEEec-CCCcEEEEEe
Q 005656 5 VTALAFSSDGQPLLASGAS----SGVISIWNLEKR--RL--QSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIF 75 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~----dg~I~vwd~~~~--~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~D~~v~iWd~ 75 (685)
-+.++++|+++ +|.+... +|.|..|.+... ++ +.... ........++++|++++|+++. .+|+|.++++
T Consensus 39 Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 39 PSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp ECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 45688999998 6666654 678999988763 43 33332 2344567899999999888886 4899999999
Q ss_pred cCCCCCCceeEec----------ccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCce-eeEechhhHHHHHhhcc
Q 005656 76 DTTDGDPRLLRFR----------SGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQ-SRELSQRHVAKRARKLK 143 (685)
Q Consensus 76 ~~~~~~~~~~~~~----------~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~ 143 (685)
+............ ......+.++.|+|+|++++++.. ...|.+|++..... .....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~------------ 184 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD------------ 184 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE------------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee------------
Confidence 8752211221111 112345689999999999888753 34788888865541 11100
Q ss_pred ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-
Q 005656 144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA- 222 (685)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~- 222 (685)
.+. .......+.++|+|+|+++++...
T Consensus 185 --------------------------------------------------~~~--~~~G~GPRh~~f~pdg~~~Yv~~e~ 212 (345)
T PF10282_consen 185 --------------------------------------------------SIK--VPPGSGPRHLAFSPDGKYAYVVNEL 212 (345)
T ss_dssp --------------------------------------------------EEE--CSTTSSEEEEEE-TTSSEEEEEETT
T ss_pred --------------------------------------------------ccc--cccCCCCcEEEEcCCcCEEEEecCC
Confidence 000 033566899999999999876654
Q ss_pred CCcEEEEECC--CCcccc--ccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECC--CCce--EEEeec-
Q 005656 223 GGWIERFNLQ--SGISRG--SYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK--GRDL--KSRWEV- 292 (685)
Q Consensus 223 dg~i~~~d~~--~~~~~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~--~~~~--~~~~~~- 292 (685)
++.|.+|++. .+.... .....+ ...........+.++|+|++|+++. .++.|.+|++. ++.+ +..+..
T Consensus 213 s~~v~v~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~ 290 (345)
T PF10282_consen 213 SNTVSVFDYDPSDGSLTEIQTISTLP--EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG 290 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESCE--TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred CCcEEEEeecccCCceeEEEEeeecc--ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence 6789999888 442211 111110 1112223688999999999887766 56789999994 3443 333443
Q ss_pred CCceeEEEEeecCCEEEEEeC-CCeEEEEEc--CCCeeEEEEe-cCCCCeEEEEE
Q 005656 293 GCSLVKIVYHRVNGLLATVAD-DLVIRLFDV--VALRMVRKFE-GHTDRITDFCF 343 (685)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~--~~~~~~~~~~-~h~~~I~~l~~ 343 (685)
......+.++|+|++|+++.. ++.|.+|++ .+|.+...-. -.-....||.|
T Consensus 291 G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 291 GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 345889999999999888874 568999876 4666544332 23344666665
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.1e-11 Score=128.44 Aligned_cols=233 Identities=11% Similarity=0.098 Sum_probs=149.9
Q ss_pred cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC---CcEEEEEecCCCCCCceeEecccCCCCCeEEEEec
Q 005656 26 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 102 (685)
Q Consensus 26 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D---~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 102 (685)
.|.++|.+.+... .+. .+...+.+..|+|||+.|+..+.+ ..|.+|+++++. .+.+. ...+.+....|+|
T Consensus 180 ~l~~~d~~g~~~~-~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--~~~l~---~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARAV-TLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--REQIT---NFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCce-EEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--EEEcc---CCCCCcCCeEECC
Confidence 4888888766544 343 567789999999999988776543 357777776542 22222 2334455789999
Q ss_pred CCCEEE-EEeCCC--ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656 103 NGRHIL-SAGQDR--AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 179 (685)
Q Consensus 103 ~~~~l~-s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (685)
||+.|+ +.+.+| .|.+||+.++.... +.
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt------------------------------------------------ 283 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT------------------------------------------------ 283 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEE-cc------------------------------------------------
Confidence 999887 444455 46666765543211 10
Q ss_pred EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CC--cEEEEECCCCccccccccccccccCCCCcCEE
Q 005656 180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVV 256 (685)
Q Consensus 180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (685)
.+........|+|+|+.++..+. +| .|+++++.++....... ......
T Consensus 284 --------------------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~---------~~~~~~ 334 (430)
T PRK00178 284 --------------------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF---------VGNYNA 334 (430)
T ss_pred --------------------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec---------CCCCcc
Confidence 11223445689999998877664 33 58888887776433211 112234
Q ss_pred EEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEEE
Q 005656 257 GVACDSTNTLMISAGYH-G--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRK 330 (685)
Q Consensus 257 ~l~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~ 330 (685)
...|+|+|+.++..+.+ + .|.+||+.+++.... ..........|+|+|+.++..+.+ ..++++++. +...+.
T Consensus 335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~ 412 (430)
T PRK00178 335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLP 412 (430)
T ss_pred ceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc-cCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEE
Confidence 57899999998877643 3 588899988765433 222233356899999988776654 357777775 444455
Q ss_pred EecCCCCeEEEEEcC
Q 005656 331 FEGHTDRITDFCFSE 345 (685)
Q Consensus 331 ~~~h~~~I~~l~~sp 345 (685)
+..+.+.+...+|+|
T Consensus 413 l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 413 LPTAQGEVREPSWSP 427 (430)
T ss_pred CcCCCCCcCCCccCC
Confidence 655667778888887
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=8.1e-10 Score=110.16 Aligned_cols=261 Identities=9% Similarity=0.059 Sum_probs=167.5
Q ss_pred CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC----------CCceEEEEeecCceeeEechhhHHH
Q 005656 68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ----------DRAFRLFSVIQDQQSRELSQRHVAK 137 (685)
Q Consensus 68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~ 137 (685)
++|.+.|.++. +.+..+..-..+ ..+ ++|||+.++.+.. +..|.+||+.+.+...++..+...
T Consensus 27 ~~v~ViD~~~~----~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p- 99 (352)
T TIGR02658 27 TQVYTIDGEAG----RVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP- 99 (352)
T ss_pred ceEEEEECCCC----EEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc-
Confidence 78999988876 666555433333 345 9999998887765 788999999998887776421100
Q ss_pred HHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE
Q 005656 138 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 217 (685)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 217 (685)
..........++++|+|+++
T Consensus 100 ------------------------------------------------------------~~~~~~~~~~~~ls~dgk~l 119 (352)
T TIGR02658 100 ------------------------------------------------------------RFLVGTYPWMTSLTPDNKTL 119 (352)
T ss_pred ------------------------------------------------------------hhhccCccceEEECCCCCEE
Confidence 00012334578999999999
Q ss_pred EEEe-c-CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC-CceE-EE---e
Q 005656 218 VLGT-A-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLK-SR---W 290 (685)
Q Consensus 218 ~~g~-~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~-~~---~ 290 (685)
++.. . +..|.++|+.+++....+.. .+...-...+.+. .++ -+.||......+.+ ++.. .. +
T Consensus 120 ~V~n~~p~~~V~VvD~~~~kvv~ei~v---------p~~~~vy~t~e~~-~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 120 LFYQFSPSPAVGVVDLEGKAFVRMMDV---------PDCYHIFPTANDT-FFM-HCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred EEecCCCCCEEEEEECCCCcEEEEEeC---------CCCcEEEEecCCc-cEE-EeecCceEEEEecCCCceEEeeeeee
Confidence 9876 4 68999999999998877642 1122222222222 221 22344444433321 1111 11 1
Q ss_pred ec-CCce-eEEEEee-cCCEEEEEeCCCeEEEEEcCC-----CeeEEEEec-------CCCCeEEEEEcCCCCEEEEEe-
Q 005656 291 EV-GCSL-VKIVYHR-VNGLLATVADDLVIRLFDVVA-----LRMVRKFEG-------HTDRITDFCFSEDGKWLLSSG- 354 (685)
Q Consensus 291 ~~-~~~i-~~~~~~~-~~~~l~~~~~dg~I~i~d~~~-----~~~~~~~~~-------h~~~I~~l~~spdg~~l~s~s- 354 (685)
.. ..++ ..-.|.+ +|+++.+... |+|.+.|+.. .+.+..+.. ..+.+.-++++|+++.++.+.
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 11 0000 0014455 7888877777 9999999643 333333221 223344599999999888743
Q ss_pred ---------CCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC-eEEEEEeCCCeEEEEEcC
Q 005656 355 ---------MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMD-VLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 355 ---------~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~-~Lat~~~d~~~I~lW~~~ 407 (685)
..+.|.++|..+++.+..+.....+..++++|||+ +|+++....+.|.+.|..
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 12579999999999999999988999999999999 888887655689999843
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3e-11 Score=127.97 Aligned_cols=233 Identities=12% Similarity=0.090 Sum_probs=147.1
Q ss_pred cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC-CC--cEEEEEecCCCCCCceeEecccCCCCCeEEEEec
Q 005656 26 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DN--SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 102 (685)
Q Consensus 26 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~--~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 102 (685)
.|.++|....... .+. .+...+.+..|+|||+.|+..+. ++ .|.+||+.++ ..+.+.... +......|+|
T Consensus 199 ~l~i~d~dG~~~~-~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg--~~~~lt~~~---g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ--VREKVTSFP---GINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCce-Eee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC--CeEEecCCC---CCcCCeeECC
Confidence 6777787665543 333 56778999999999998887654 33 4666666544 223333332 2345689999
Q ss_pred CCCEEEE-EeCCCc--eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656 103 NGRHILS-AGQDRA--FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 179 (685)
Q Consensus 103 ~~~~l~s-~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (685)
||+.|+. .+.+|. |.+||+.+++.. .+.
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt------------------------------------------------ 302 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT-RIT------------------------------------------------ 302 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE-ECc------------------------------------------------
Confidence 9998875 455665 555565444321 110
Q ss_pred EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CC--cEEEEECCCCccccccccccccccCCCCcCEE
Q 005656 180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVV 256 (685)
Q Consensus 180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (685)
.+.......+|+|+|++++..+. +| .|+++|+.++...... .+.....
T Consensus 303 --------------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt---------~~g~~~~ 353 (448)
T PRK04792 303 --------------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT---------FEGEQNL 353 (448)
T ss_pred --------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe---------cCCCCCc
Confidence 12233456789999998877654 33 5777788777643321 1112234
Q ss_pred EEEEcCCCCEEEEEEC-CC--eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--eEEEEEcCCCeeEEE
Q 005656 257 GVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRK 330 (685)
Q Consensus 257 ~l~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~ 330 (685)
..+|+|+|++++..+. ++ .|.++|+.++..... ..........|+|+|+.|+..+.+ + .+++++. +++..+.
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~ 431 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVL-TSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR 431 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEc-cCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence 5689999998877664 33 466678887765432 222222345799999987766543 3 4777786 5666677
Q ss_pred EecCCCCeEEEEEcC
Q 005656 331 FEGHTDRITDFCFSE 345 (685)
Q Consensus 331 ~~~h~~~I~~l~~sp 345 (685)
+..+.+.+...+|||
T Consensus 432 l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 432 LPAGQGEVKSPAWSP 446 (448)
T ss_pred CcCCCCCcCCCccCC
Confidence 776777788889987
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.43 E-value=2.9e-10 Score=118.85 Aligned_cols=301 Identities=13% Similarity=0.098 Sum_probs=184.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCe
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 96 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~ 96 (685)
.+++++.+|.|..+|..+|+.+.... .......+.. .++..++.++.++.+..+|..++. .+..... ...+.
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~----~~W~~~~-~~~~~ 138 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVD-LDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGK----ELWRAKL-SSEVL 138 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeec-CCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCc----Eeeeecc-Cceee
Confidence 57778888999999999999877665 2222112222 246677788889999999887763 3322211 12221
Q ss_pred EEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcC
Q 005656 97 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 176 (685)
Q Consensus 97 ~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (685)
+.-.. .+..++.++.+|.+..||..+++..........
T Consensus 139 ~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~----------------------------------------- 176 (377)
T TIGR03300 139 SPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP----------------------------------------- 176 (377)
T ss_pred cCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-----------------------------------------
Confidence 11111 244677788899999999988875544321000
Q ss_pred CceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCC--cC
Q 005656 177 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN--GE 254 (685)
Q Consensus 177 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~--~~ 254 (685)
. . ...... +..+ .+..++++..+|.+..+|..+|........... .+.. ..
T Consensus 177 --------------~---~----~~~~~~-sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~---~g~~~~~~ 229 (377)
T TIGR03300 177 --------------A---L----TLRGSA-SPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALP---KGRTELER 229 (377)
T ss_pred --------------c---e----eecCCC-CCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccC---CCCCchhh
Confidence 0 0 000000 0111 124678888889999999999876544321000 0000 00
Q ss_pred ---E-EEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE
Q 005656 255 ---V-VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK 330 (685)
Q Consensus 255 ---v-~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~ 330 (685)
+ ....+ .+..++.++.+|.++.||..+++.+....... ... ....+..+++++.+|.++.+|..+++.+..
T Consensus 230 ~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 230 LVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQG--PAVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred hhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccC--ceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 0 01111 24578888889999999999998877665332 111 223567888888999999999999988766
Q ss_pred EecCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-e-EEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656 331 FEGHTD-RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-I-TALSLSPNMDVLATAHVDQNGVYLW 404 (685)
Q Consensus 331 ~~~h~~-~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v-~~v~~spdg~~Lat~~~d~~~I~lW 404 (685)
...... ....... .+..|++++.+|.|+++|..+|+.+..+..+.. + .+..+. + ..|++++.|| .|+.|
T Consensus 305 ~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG-~l~~~ 376 (377)
T TIGR03300 305 NDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDG-DLYAF 376 (377)
T ss_pred cccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCc-eEEEe
Confidence 532211 1222222 466889999999999999999999988876553 2 222332 3 3477777787 77765
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=6.5e-11 Score=126.68 Aligned_cols=107 Identities=26% Similarity=0.391 Sum_probs=90.0
Q ss_pred EccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc
Q 005656 10 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 89 (685)
Q Consensus 10 fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~ 89 (685)
++++.- ++++|+.-|.|.+|+....+....+. +|.+.|.++.|+-||+++++.|.|.++|+|++++..... ...-
T Consensus 141 ~s~~~~-~i~~gsv~~~iivW~~~~dn~p~~l~-GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~f 215 (967)
T KOG0974|consen 141 DSAEEL-YIASGSVFGEIIVWKPHEDNKPIRLK-GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGF 215 (967)
T ss_pred ccCcEE-EEEeccccccEEEEeccccCCcceec-ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccc
Confidence 455544 88899999999999988444333455 999999999999999999999999999999999874322 3556
Q ss_pred cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656 90 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 90 ~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
+|++.|+.+.|.|+ .+++++.|.+.++|+...
T Consensus 216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred cccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence 99999999999998 999999999999996543
No 263
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.42 E-value=7.5e-10 Score=108.38 Aligned_cols=375 Identities=12% Similarity=0.092 Sum_probs=214.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEE-----ecCCCcEEEEEecCCCCCCceeEec
Q 005656 14 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS-----ASADNSIKMWIFDTTDGDPRLLRFR 88 (685)
Q Consensus 14 g~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-----~s~D~~v~iWd~~~~~~~~~~~~~~ 88 (685)
|..++.+++.| +..+++.+++..+.. .|-+-|+...|+|+|+.+|- ++.-.+.-+|-++..++..+.+..+
T Consensus 50 GD~IiFt~~Dd--lWe~slk~g~~~rit--S~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyf 125 (668)
T COG4946 50 GDRIIFTCCDD--LWEYSLKDGKPLRIT--SGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYF 125 (668)
T ss_pred CcEEEEEechH--HHHhhhccCCeeEEe--cccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEe
Confidence 55467776643 566677888777665 58889999999999997776 3444455566666666666666666
Q ss_pred ccCCCCCeE-EEEecCCCEEEEEeCCCceE----EEEeecCce-eeEechhhHHH---HHhhccccc-------------
Q 005656 89 SGHSAPPLC-IRFYANGRHILSAGQDRAFR----LFSVIQDQQ-SRELSQRHVAK---RARKLKMKE------------- 146 (685)
Q Consensus 89 ~~h~~~v~~-i~~~~~~~~l~s~s~dg~i~----vwd~~~~~~-~~~~~~~~~~~---~~~~~~~~~------------- 146 (685)
| .+-+. .-|.|||+.+++...-.-.. +|.+..+.. ...+..+.... .........
T Consensus 126 -G--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkG 202 (668)
T COG4946 126 -G--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKG 202 (668)
T ss_pred -c--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccC
Confidence 3 23333 45899999888765433222 233322211 11110000000 000000000
Q ss_pred -----------cccccCceeeeeccc---ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc
Q 005656 147 -----------EELKLKPVIAFDCAE---IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA 212 (685)
Q Consensus 147 -----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 212 (685)
....+..++.+.... .-..+-...++-+.+-+.++.-++....+.++.- -..-.+-..+.
T Consensus 203 GtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTn------FtdYY~R~~ns 276 (668)
T COG4946 203 GTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTN------FTDYYPRNANS 276 (668)
T ss_pred CccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCC------chhccccccCC
Confidence 000011111111000 0001111122333444444444444444433321 01122233456
Q ss_pred CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEE---EE-EcC-CCCEEEEEECCCeEEEEECCCCceE
Q 005656 213 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG---VA-CDS-TNTLMISAGYHGDIKVWDFKGRDLK 287 (685)
Q Consensus 213 ~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~---l~-~~~-~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (685)
||+.++. ...|.|++||..+......-...+..........+.- +. |++ +|.+++..|. |...+.+...+-.+
T Consensus 277 DGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i 354 (668)
T COG4946 277 DGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI 354 (668)
T ss_pred CCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE
Confidence 7777766 3568899999887654332221111000000011111 11 222 5677877775 67777765544333
Q ss_pred EEeecCCceeEEEEeecCCEEEEEeCCC-eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 288 SRWEVGCSLVKIVYHRVNGLLATVADDL-VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 288 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
.+.....|.-..+..+++-++.|..|| .+-|||..+++. ..+...-+.|-++..+|||++++.+.....+-+.|+.+
T Consensus 355 -qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 355 -QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred -EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 344556688888888888999999999 999999998874 45666778899999999999999999889999999999
Q ss_pred CceeeEEeeccc-eEEEEEcCCCCeEEEEEeCC---CeEEEEE
Q 005656 367 ARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQ---NGVYLWV 405 (685)
Q Consensus 367 ~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~---~~I~lW~ 405 (685)
|.....=+.... |+.++|||+++++|-+--+| ..|++++
T Consensus 433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence 976544444444 99999999999999987654 2577775
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.6e-10 Score=121.45 Aligned_cols=242 Identities=12% Similarity=0.028 Sum_probs=149.9
Q ss_pred CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcE---EEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEe
Q 005656 25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV---LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 101 (685)
Q Consensus 25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~---l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~ 101 (685)
+.|.+.|...+...... .....+.+-+|+|||+. +++...++.-.||-.+...+..+.+..+.+ .....+|+
T Consensus 165 ~~l~~~d~dG~~~~~lt--~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQNLRPLT--QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCCceEcc--cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEEC
Confidence 46888888776554433 34556788899999974 235555565556655554444455554433 34567999
Q ss_pred cCCCEEEEEeC-CCc----eEEEEeecCc--eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656 102 ANGRHILSAGQ-DRA----FRLFSVIQDQ--QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 174 (685)
Q Consensus 102 ~~~~~l~s~s~-dg~----i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (685)
|||+.|+..+. +|. +..|++..+. ....+
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------------------------------------------- 275 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------------------------------------------- 275 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--------------------------------------------
Confidence 99998887653 232 2224433210 00000
Q ss_pred cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCc--EEEEECCC-CccccccccccccccCC
Q 005656 175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGW--IERFNLQS-GISRGSYLDMSERSNYA 250 (685)
Q Consensus 175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~--i~~~d~~~-~~~~~~~~~~~~~~~~~ 250 (685)
.. .........+|+|||+.++..+ .+|. |+++++.. +.....+. .
T Consensus 276 --------------------t~---~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt--------~ 324 (428)
T PRK01029 276 --------------------LN---EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT--------K 324 (428)
T ss_pred --------------------ec---CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec--------c
Confidence 00 1112334679999999888765 4564 44445532 22122111 3
Q ss_pred CCcCEEEEEEcCCCCEEEEEECC---CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCC
Q 005656 251 HNGEVVGVACDSTNTLMISAGYH---GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVA 324 (685)
Q Consensus 251 h~~~v~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~I~i~d~~~ 324 (685)
+...+....|+|+|+.|+..+.+ ..|.+||+.+++..........+....|+|||+.|+.... ...|+++|+.+
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 34566788999999988877643 4699999998877654444456678999999997775543 35789999988
Q ss_pred CeeEEEEecCCCCeEEEEEcCCC
Q 005656 325 LRMVRKFEGHTDRITDFCFSEDG 347 (685)
Q Consensus 325 ~~~~~~~~~h~~~I~~l~~spdg 347 (685)
++..... ...+.+...+|+|-.
T Consensus 405 g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 405 KKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred CCEEEee-cCCCcccCceecCCC
Confidence 7754443 345567788898853
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.5e-10 Score=121.63 Aligned_cols=176 Identities=11% Similarity=0.037 Sum_probs=113.8
Q ss_pred eEEEEEccCCCEEEEEec-CC--cE--EEEECCCCc--cccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeE
Q 005656 205 VKACTISACGNFAVLGTA-GG--WI--ERFNLQSGI--SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDI 276 (685)
Q Consensus 205 v~~~~~s~~g~~l~~g~~-dg--~i--~~~d~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i 276 (685)
.....|||||+.|+.... +| .+ ..|++..+. ....+. ..+.+.....+|+|+|+.|+..+ .+|..
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-------~~~~~~~~~p~wSPDG~~Laf~s~~~g~~ 305 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-------NEAFGTQGNPSFSPDGTRLVFVSNKDGRP 305 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-------cCCCCCcCCeEECCCCCEEEEEECCCCCc
Confidence 445789999998887653 23 33 346766531 111111 02223345789999999887765 46654
Q ss_pred EEE--ECCC-CceEEEee-cCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 005656 277 KVW--DFKG-RDLKSRWE-VGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 349 (685)
Q Consensus 277 ~iw--d~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~ 349 (685)
.+| ++.. +.....+. ....+....|+|||+.|+..+.+ ..|++||+.+++... +......+....|+|||++
T Consensus 306 ~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~ 384 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLH 384 (428)
T ss_pred eEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCE
Confidence 455 4432 22223332 23566788999999988876543 479999999887643 4333445778999999998
Q ss_pred EEEEeC---CCcEEEEEcCCCceeeEEeeccceEEEEEcCCC
Q 005656 350 LLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNM 388 (685)
Q Consensus 350 l~s~s~---Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg 388 (685)
|+..+. .+.|++||+.+++..........+...+|+|-.
T Consensus 385 L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 385 LVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 875442 356889999888766555555557788888754
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.40 E-value=1.8e-11 Score=114.93 Aligned_cols=254 Identities=16% Similarity=0.256 Sum_probs=191.1
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce-eeEechhhHHHHHhhccccccccccCceeeeec
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 159 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (685)
++.+++.+.||...|+....-|...-+++.+.|.++|+|--++..+ -..+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI----------------------------- 63 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI----------------------------- 63 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-----------------------------
Confidence 3466777889999999999989888899999999999995433211 0000
Q ss_pred ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656 160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 239 (685)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~ 239 (685)
....+.+++++.+.+....|++|-.+|.+.-+.+...-....
T Consensus 64 --------------------------------------~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~ 105 (404)
T KOG1409|consen 64 --------------------------------------YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMT 105 (404)
T ss_pred --------------------------------------hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcc
Confidence 014577899999999999999999999999987654322222
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
+. +....|...|..+.|+-...++++.+.|..+.---.+.+..+..+......+++.+.-. +..+|...|.|.+
T Consensus 106 ~~----r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 106 FL----KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITM 179 (404)
T ss_pred hh----hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEE
Confidence 21 12338999999999999999999999998876666666665554444333333333332 5666766777766
Q ss_pred EEc--CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee--eEEeeccceEEEEEcCCCCeEEEEE
Q 005656 320 FDV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI--DAIHVDVSITALSLSPNMDVLATAH 395 (685)
Q Consensus 320 ~d~--~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i--~~~~~~~~v~~v~~spdg~~Lat~~ 395 (685)
..+ ..-.++.++.+|.+.+++++|.|..+.|.+|..|..|.+||+.-.+-+ ....+...|..+...+--+.|.+++
T Consensus 180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ 259 (404)
T KOG1409|consen 180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG 259 (404)
T ss_pred EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc
Confidence 554 345778899999999999999999999999999999999999765443 3333455599999999999999999
Q ss_pred eCCCeEEEEEcCC
Q 005656 396 VDQNGVYLWVNRC 408 (685)
Q Consensus 396 ~d~~~I~lW~~~~ 408 (685)
.|| .|.+|+.+.
T Consensus 260 edg-~i~~w~mn~ 271 (404)
T KOG1409|consen 260 EDG-GIVVWNMNV 271 (404)
T ss_pred CCC-eEEEEeccc
Confidence 998 899998654
No 267
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=8.9e-12 Score=133.13 Aligned_cols=273 Identities=12% Similarity=0.165 Sum_probs=185.9
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC------CcEEEEecCCCcEEEEEec
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN------EPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~------~~~l~s~s~D~~v~iWd~~ 76 (685)
+++++..+-. + +|..| +.-.|.+||+.++.++..+...|.-.+. .+. +.+++++..-..+..=..+
T Consensus 8 ~~l~~~~~~~--~-~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 8 GPLNLPQLVS--D-YLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccchhhcc--c-eeeec-CCCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchh
Confidence 4455555544 3 44443 3567999999998776555422222222 121 2345555443333322111
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 156 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
. .... .-...+....+.-+.+.++.++.+..+.+||...+..........
T Consensus 80 ~-----~~~~---~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e---------------------- 129 (967)
T KOG0974|consen 80 N-----QIIE---RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE---------------------- 129 (967)
T ss_pred h-----hhhh---hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCc----------------------
Confidence 1 1111 122334445555567788999999999999986654433221100
Q ss_pred eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656 157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 236 (685)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~ 236 (685)
. ..-....-+-.+++.-++++|+.-|.|.+|+......
T Consensus 130 ------------------------------------r------~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 130 ------------------------------------R------CTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ------------------------------------e------EEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 0 0001122334566778899999999999999872222
Q ss_pred ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE--EeecCCceeEEEEeecCCEEEEEeCC
Q 005656 237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEVGCSLVKIVYHRVNGLLATVADD 314 (685)
Q Consensus 237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d 314 (685)
.. ...+|.+.|..+.++.+|+++++.|.|.++++|++.+.+... -+.|.+.+..++++|+ .+++++.|
T Consensus 168 p~--------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ged 237 (967)
T KOG0974|consen 168 PI--------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGED 237 (967)
T ss_pred cc--------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccc
Confidence 21 223999999999999999999999999999999999887654 5667799999999997 99999999
Q ss_pred CeEEEEEcCCCeeEEEEecCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 315 LVIRLFDVVALRMVRKFEGHTD-RITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 315 g~I~i~d~~~~~~~~~~~~h~~-~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
.+.++|+.. ++.+..+.+|.+ .|..++..++..+++|++.||.+++|++..
T Consensus 238 ctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 238 CTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999765 444557888865 489999999999999999999999999754
No 268
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=3.1e-11 Score=121.67 Aligned_cols=188 Identities=14% Similarity=0.285 Sum_probs=155.9
Q ss_pred cCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEE------cC--------------CCCEEEEEE
Q 005656 212 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC------DS--------------TNTLMISAG 271 (685)
Q Consensus 212 ~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~--------------~~~~l~s~s 271 (685)
|.+.+++..+.||.+++|+...++....|.+.. .-++..++..| +| +...++-|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-----~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-----SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccch-----hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 456789999999999999999998887775321 12233334333 11 334677788
Q ss_pred CCCeEEEEECCCCceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC
Q 005656 272 YHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 348 (685)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~ 348 (685)
..|.|.+|+...+++...+.. .+++.++.++.+-..|.+++.|+.+..|+....+.++.+.+....+.+++.+|||.
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 899999999999999888873 48899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCC-----CCeEEEEEeCCCeEEEEEc
Q 005656 349 WLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-----MDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 349 ~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spd-----g~~Lat~~~d~~~I~lW~~ 406 (685)
.|++|+ ++|++||+.+++.+..|.+|.. |++++|..+ |.++.++..-...|.+|-.
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 999997 6899999999999999998766 999999887 7777776655558899964
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=6.2e-11 Score=121.13 Aligned_cols=277 Identities=12% Similarity=0.185 Sum_probs=198.5
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---------------eeEEeecccccCeeEEEEeCCCcEEEEecCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---------------LQSVIREAHDNAIISLHFFANEPVLMSASAD 67 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~---------------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D 67 (685)
....|++|+.... ++|+|+.||.++|-.+.+.. .-+++. ||.+.|.-+.|+.+.+.|-|+..+
T Consensus 15 vkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccccCCC
Confidence 4578999999877 99999999999999776421 123444 999999999999999999999999
Q ss_pred CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656 68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 147 (685)
Q Consensus 68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (685)
|-|.+|-+-.++.-... .-......|.+++|..||..+...-.||.|.+=+++.++.
T Consensus 93 GlIiVWmlykgsW~EEM--iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI--------------------- 149 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEM--INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI--------------------- 149 (1189)
T ss_pred ceEEEEeeecccHHHHH--hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee---------------------
Confidence 99999987665321111 1233566789999999999999999999998877654421
Q ss_pred ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656 148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 227 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 227 (685)
|... -.......+.|++|...++.+-.+|.+.
T Consensus 150 -----------------------------------wgKe-------------Lkg~~l~hv~ws~D~~~~Lf~~ange~h 181 (1189)
T KOG2041|consen 150 -----------------------------------WGKE-------------LKGQLLAHVLWSEDLEQALFKKANGETH 181 (1189)
T ss_pred -----------------------------------cchh-------------cchheccceeecccHHHHHhhhcCCcEE
Confidence 1110 1122345788999999999999999999
Q ss_pred EEECCCCccccccccccc---cccCCCCcCEEEEEEc--------CCCCEEEEEECCCeEEEEECCCCceEEEeecCCce
Q 005656 228 RFNLQSGISRGSYLDMSE---RSNYAHNGEVVGVACD--------STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 296 (685)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~---~~~~~h~~~v~~l~~~--------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i 296 (685)
+||.+..-.+..-..-.. .........|..+.|. |+...++.+-..|.+.+-.-.+......+..+-.+
T Consensus 182 lydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~ 261 (1189)
T KOG2041|consen 182 LYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKI 261 (1189)
T ss_pred EecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEe
Confidence 999876533221110000 0000111225555553 46678999999999988876655555556666788
Q ss_pred eEEEEeecCCEEEEEeCCC---------eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656 297 VKIVYHRVNGLLATVADDL---------VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg---------~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~ 353 (685)
....|+++|..||+++.+. .|.+|. .-|+.+.+++.....|++++|-..|-.++.+
T Consensus 262 vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 262 VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred ecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 9999999999999998642 455554 3478888898888889999997766555443
No 270
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2.6e-11 Score=125.06 Aligned_cols=394 Identities=14% Similarity=0.140 Sum_probs=231.4
Q ss_pred CCCcEEEEEEccC-----------CCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC---C-cEEEEec
Q 005656 1 MRGAVTALAFSSD-----------GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN---E-PVLMSAS 65 (685)
Q Consensus 1 h~~~V~~l~fspd-----------g~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~---~-~~l~s~s 65 (685)
|+..|+.+.|.|- ...+||++...|.|.+||...+..+..+. .|.++|..++|-+. . ..|+.-.
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh 132 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIH 132 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEec
Confidence 6788999999873 23478888999999999999999888887 89999999999873 3 3677777
Q ss_pred CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCcee------eEechhhHH--
Q 005656 66 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQS------RELSQRHVA-- 136 (685)
Q Consensus 66 ~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~-- 136 (685)
..+++.+|+.++++ .+...........|+.+.| |.+++..-+..|.+.+-+....... ..+...+..
T Consensus 133 ~ss~lvLwntdtG~----k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~ 208 (1062)
T KOG1912|consen 133 GSSTLVLWNTDTGE----KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA 208 (1062)
T ss_pred CCcEEEEEEccCCc----eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence 77899999998884 3333233344566688877 4566666666666666554322111 111111000
Q ss_pred HHHhhccccccccccCce---eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC
Q 005656 137 KRARKLKMKEEELKLKPV---IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 213 (685)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 213 (685)
.-..........-..++- ..+.....-.+.|.+++..... ..+.++|++-...-..+ + -..+.+.-+.+-|+
T Consensus 209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p-rellv~dle~~~~l~vv--p--ier~~akfv~vlP~ 283 (1062)
T KOG1912|consen 209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP-RELLVFDLEYECCLAVV--P--IERGGAKFVDVLPD 283 (1062)
T ss_pred hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec-cceEEEcchhhceeEEE--E--eccCCcceeEeccC
Confidence 000000000000000110 0011111223456666655444 34555665532221111 1 22344556666665
Q ss_pred C--CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEE-----------EEEcCC-CCEEEEEECCCeEEEE
Q 005656 214 G--NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG-----------VACDST-NTLMISAGYHGDIKVW 279 (685)
Q Consensus 214 g--~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~-----------l~~~~~-~~~l~s~s~dg~i~iw 279 (685)
+ ..++++..||.+.+|--+......+........ .-...+.+ ....|. ...++.--.+|.+.+|
T Consensus 284 ~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~--dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 284 PRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSM--DLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred CCcceEEEEecCCeEEEEEeeccCccccccchhhcc--ccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 5 679999999999999765422211111000000 00111111 122233 2223333346777888
Q ss_pred ECCCCceEEEe--------------------------------ecCCceeEEEEee-----------cC-------CEEE
Q 005656 280 DFKGRDLKSRW--------------------------------EVGCSLVKIVYHR-----------VN-------GLLA 309 (685)
Q Consensus 280 d~~~~~~~~~~--------------------------------~~~~~i~~~~~~~-----------~~-------~~l~ 309 (685)
.+.+++..... .+....++...+| .+ .++|
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA 441 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA 441 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence 87754321100 0112222222221 12 2789
Q ss_pred EEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE---------eCCCcEEEEEcCCCceeeEE--e--ec
Q 005656 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS---------GMDGSLRIWDVILARQIDAI--H--VD 376 (685)
Q Consensus 310 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~---------s~Dg~I~iwd~~~~~~i~~~--~--~~ 376 (685)
+|...|+|.++|+.++...+.+..|.+.|.++.|-...+++-.+ +.-+.+.+-|+++|.-...- . ..
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de 521 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE 521 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCc
Confidence 99999999999999999999999999999999997766544322 22245788899998654332 2 34
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 377 VSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 377 ~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
++|+.+..|..|+||+..-.+. -+.+|+.+
T Consensus 522 spI~~irvS~~~~yLai~Fr~~-plEiwd~k 551 (1062)
T KOG1912|consen 522 SPIRAIRVSSSGRYLAILFRRE-PLEIWDLK 551 (1062)
T ss_pred CcceeeeecccCceEEEEeccc-chHHHhhc
Confidence 5699999999999999999997 89999874
No 271
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=99.35 E-value=4.2e-12 Score=106.24 Aligned_cols=105 Identities=19% Similarity=0.350 Sum_probs=98.8
Q ss_pred CChHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhhcc
Q 005656 563 KNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEIS--CRNNFEFIQAVIRLFLKIHGE 640 (685)
Q Consensus 563 ~~~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~e~~~~~l~~~l~~h~~ 640 (685)
||...+.+++.+.+++.|+..+++|+ ..++..||++|..+++ ...+.|++..|+..+|+.||.
T Consensus 1 Nd~~ll~~vl~~~~~~~I~~tv~~Lp---------------~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~ 65 (110)
T PF04003_consen 1 NDEELLLEVLERIPPSDIENTVRSLP---------------FSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGS 65 (110)
T ss_pred CHHHHHHHHHhhCCHHHHHHHHHhCC---------------HHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Confidence 57789999999999999999999995 4789999999999887 448999999999999999999
Q ss_pred ccccc-hHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhccc
Q 005656 641 TVRCH-TKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSN 682 (685)
Q Consensus 641 ~l~~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (685)
+|++. +++++.|..|++.++...+.++++++.|.+.|+|+.+
T Consensus 66 ~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l~~~n~~~L~~l~~ 108 (110)
T PF04003_consen 66 YLSSSSPELRPVLRSLQKILRERLQNLSKLLDLNLGRLDYLLS 108 (110)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999864
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.33 E-value=1.5e-08 Score=115.14 Aligned_cols=359 Identities=11% Similarity=0.147 Sum_probs=207.1
Q ss_pred cEEEEEEccCCCCEEEEEe-CCC--cEEEEeCCCCe---eeEEee----cccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656 4 AVTALAFSSDGQPLLASGA-SSG--VISIWNLEKRR---LQSVIR----EAHDNAIISLHFFANEPVLMSASADNSIKMW 73 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~-~dg--~I~vwd~~~~~---~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW 73 (685)
.++..+|.+....++++.+ ... .|.+....... .+..+. ....+.|.++.|.++...++.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 4667778776653433333 222 23333332222 222221 1234689999999999988888899999888
Q ss_pred EecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
..+.... ...+.....-...|.+++||||+..|+.++.+|++.+.+ .+.....+...... ..+.
T Consensus 103 ~~~~~~~-~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~------------~~~~-- 166 (928)
T PF04762_consen 103 REDPDPD-EDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSD------------DFGE-- 166 (928)
T ss_pred EccCCCC-CceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCcc------------ccCC--
Confidence 3332111 122223334567899999999999999999999988774 23332222211000 0000
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEE---------EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec--
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVW---------RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-- 222 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w---------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-- 222 (685)
...++++-++..-..- ........+.-..... ....-..++|-.||.|+++.+-
T Consensus 167 --------------~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 167 --------------SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred --------------CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 0011111110000000 0000000000000111 3446778999999999999875
Q ss_pred -C---CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceEEEeec---
Q 005656 223 -G---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKGRDLKSRWEV--- 292 (685)
Q Consensus 223 -d---g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~--- 292 (685)
. ..+++|+-. |.....-. .-.+--.+++|-|.|.+|++... ...|.+|.-+ |-....+..
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE--------~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~ 301 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSE--------PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFD 301 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccc--------cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCC
Confidence 3 468888865 43332221 22233456899999999988764 3456777643 333333332
Q ss_pred --CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE--EEEe-cCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEc--
Q 005656 293 --GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV--RKFE-GHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDV-- 364 (685)
Q Consensus 293 --~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~--~~~~-~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~-- 364 (685)
...+..+.|++++..||+...|. |.+|-..+..-. +.+. .....+..+.|+|.. ..|...+.+|.+..+++
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 36789999999999999988665 999998876422 2222 123345568999843 45666666566655443
Q ss_pred --CCCc--------ee------------------------eEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 365 --ILAR--------QI------------------------DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 365 --~~~~--------~i------------------------~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
..+. .+ ..+..+.+|.+++|++++..+|+-..|+ .|.+|.
T Consensus 381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~-~l~~~~ 454 (928)
T PF04762_consen 381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDG-SLSIYE 454 (928)
T ss_pred EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCC-CEEEEE
Confidence 1110 11 2233466799999999998888888887 788876
No 273
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2.2e-12 Score=134.49 Aligned_cols=270 Identities=16% Similarity=0.188 Sum_probs=195.7
Q ss_pred eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC--
Q 005656 37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR-- 114 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg-- 114 (685)
....++ .|+...+|++|+-+.+.|+.|+..|.|+++++.++ .......+|..+|+.+.-+.+|..+++.+.-.
T Consensus 1093 ~w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG----~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG----SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cchhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCc----cccccccccccccccccccCCcceeeeeccccCc
Confidence 345555 78899999999999999999999999999999988 45556689999999999999998877665433
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
-..+|++..--.. .
T Consensus 1168 lsaLW~~~s~~~~----------------------------------------------------------------~-- 1181 (1516)
T KOG1832|consen 1168 LSALWDASSTGGP----------------------------------------------------------------R-- 1181 (1516)
T ss_pred hHHHhccccccCc----------------------------------------------------------------c--
Confidence 3567776431100 0
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656 195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 274 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg 274 (685)
..-..-.++.|+..-.+-++|+......+||++++....++..... +.+-.-++..|+|+..+++ .||
T Consensus 1182 -----Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----~~~y~~n~a~FsP~D~LIl---ndG 1249 (1516)
T KOG1832|consen 1182 -----HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV----TSSYSNNLAHFSPCDTLIL---NDG 1249 (1516)
T ss_pred -----ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch----hhhhhccccccCCCcceEe---eCc
Confidence 1122345677777777778888888999999999998887643221 2222337788999988776 355
Q ss_pred eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 005656 275 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s 354 (685)
.+||++..+.++.+..-.....-.|+|.|..+++.+ .|||+++-+.++....-. -..+.|+..|..+...-
T Consensus 1250 --vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred --eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhhh
Confidence 479999887776665444444567999999888865 489999988776554322 35677888777554332
Q ss_pred -----C------------CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656 355 -----M------------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 355 -----~------------Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
. -...|.++......+.++.....+..++-+|...+|++-...+
T Consensus 1321 ~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~~~ 1381 (1516)
T KOG1832|consen 1321 NIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEMED 1381 (1516)
T ss_pred hhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEeccC
Confidence 0 1246777777888888998888899999999988888775443
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.31 E-value=5.5e-08 Score=110.53 Aligned_cols=370 Identities=14% Similarity=0.176 Sum_probs=221.4
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEE----eCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC-
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIW----NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT- 77 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vw----d~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~- 77 (685)
+.|.++.|-++.. -++.+..+|.|.+. +..+...... +.-+.+|.+++||||+.+|+.++.++++.+-.-+-
T Consensus 76 ~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 76 DKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEIV--GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEEE--EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 5688999999987 67778889999999 5544432221 23568999999999999999998888887653210
Q ss_pred ---------C-CCCCcee---------------------------------EecccCCCCCeEEEEecCCCEEEEEeC--
Q 005656 78 ---------T-DGDPRLL---------------------------------RFRSGHSAPPLCIRFYANGRHILSAGQ-- 112 (685)
Q Consensus 78 ---------~-~~~~~~~---------------------------------~~~~~h~~~v~~i~~~~~~~~l~s~s~-- 112 (685)
. -+..+.+ ..+. +...-..|+|-.||.++++.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 0 0000000 0011 2334567899999999998764
Q ss_pred -C---CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE--cCCceEEEEEcC
Q 005656 113 -D---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH--MDTAQAYVWRLQ 186 (685)
Q Consensus 113 -d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~w~~~ 186 (685)
. +.+|||+-+ +...... . ++..+...-...+.+..+++.. .+...+..|.-+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stS-E--------------------~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTS-E--------------------PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred CCCceeEEEEECCC-ceEEecc-c--------------------cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 2 578888754 2211111 0 1111111111111222233222 234566667666
Q ss_pred ccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-C
Q 005656 187 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T 265 (685)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~ 265 (685)
..+.++..+.. ......+..+.|++++..|++...+. |.+|-..+.....+.. ........+..+.|+|.. .
T Consensus 290 GLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe-----i~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 290 GLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE-----IRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred CcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE-----EEccCCCCCCceEECCCCCC
Confidence 66666655443 34556789999999999999988666 9999887754322211 111333445558898854 3
Q ss_pred EEEEEECCCeEEEEECC----CC----------------c----------------eEEEeecCCceeEEEEeecCCEEE
Q 005656 266 LMISAGYHGDIKVWDFK----GR----------------D----------------LKSRWEVGCSLVKIVYHRVNGLLA 309 (685)
Q Consensus 266 ~l~s~s~dg~i~iwd~~----~~----------------~----------------~~~~~~~~~~i~~~~~~~~~~~l~ 309 (685)
.|...+.+|.+..+++. .+ . ....+..+.+|.+++|++++..++
T Consensus 363 ~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA 442 (928)
T ss_pred EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE
Confidence 45555555665544331 11 0 012334457899999999998899
Q ss_pred EEeCCCeEEEEEcCCCee--------EEEEe----------cCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCc
Q 005656 310 TVADDLVIRLFDVVALRM--------VRKFE----------GHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILAR 368 (685)
Q Consensus 310 ~~~~dg~I~i~d~~~~~~--------~~~~~----------~h~~~I~~l~~spdg~~l~s~s~D---g~I~iwd~~~~~ 368 (685)
+-..||.|.+|....... ...+. .....+..++|..+...++..+.+ ..+.++++....
T Consensus 443 vl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 522 (928)
T PF04762_consen 443 VLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSE 522 (928)
T ss_pred EEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCC
Confidence 999999999998543211 11111 123457888898877766666554 678888885432
Q ss_pred ---eeeEE-eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 369 ---QIDAI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 369 ---~i~~~-~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
.+... .....+..+...++...++.-..+| .|+..+.
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G-~v~~~~~ 563 (928)
T PF04762_consen 523 NSASVESSTEVDGVVLIISSSPDSGSLYIQTNDG-KVFQLSS 563 (928)
T ss_pred CceeEEEEeccCceEEEEeeCCCCcEEEEEECCC-EEEEeec
Confidence 22222 2344466666666665455555566 6775543
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.5e-09 Score=112.37 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=95.9
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC------------CcEEEEecCCCcEE
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN------------EPVLMSASADNSIK 71 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~------------~~~l~s~s~D~~v~ 71 (685)
.-.++.|+|.| ++|-|+. ..|.|-|..+-+.++.+. -|...|+.+.|.|- ..+||++...|.|.
T Consensus 17 N~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccCccc--eEEEecC-ceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 35678899988 6888774 568999999999999998 89999999999872 23677888889999
Q ss_pred EEEecCCCCCCceeEecccCCCCCeEEEEecC---C-CEEEEEeCCCceEEEEeecCceeeEe
Q 005656 72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---G-RHILSAGQDRAFRLFSVIQDQQSREL 130 (685)
Q Consensus 72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~-~~l~s~s~dg~i~vwd~~~~~~~~~~ 130 (685)
+||+... ..+..+..|..++..++|.+. . ..|+.-....++.+|+..+|+.....
T Consensus 93 l~d~~~~----s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 93 LVDFVLA----SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred EEEehhh----hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence 9999887 555666789999999999873 4 45666677889999999988765443
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.27 E-value=7.9e-10 Score=101.98 Aligned_cols=278 Identities=15% Similarity=0.180 Sum_probs=181.9
Q ss_pred EEEEEe------------CCCcEEEEeCCCCeeeE--EeecccccCeeEEEEeC---CCc-EEEEecCCCcEEEEEecCC
Q 005656 17 LLASGA------------SSGVISIWNLEKRRLQS--VIREAHDNAIISLHFFA---NEP-VLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 17 ~latg~------------~dg~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~sp---~~~-~l~s~s~D~~v~iWd~~~~ 78 (685)
+||+|+ ..|.+.+|++...+... +++...+..+..+.|+. +|. .++-+-.+|.|.++..+..
T Consensus 26 vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~ 105 (339)
T KOG0280|consen 26 VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED 105 (339)
T ss_pred eEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccc
Confidence 777775 34789999988766543 33324456778888875 444 5666777899999976554
Q ss_pred CCCCceeEecccCCC---CCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 79 DGDPRLLRFRSGHSA---PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
... -.++.+..-.- ...++.|++.+..++++-.+|.+.+-+........
T Consensus 106 ~ss-~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~--------------------------- 157 (339)
T KOG0280|consen 106 ESS-VHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEK--------------------------- 157 (339)
T ss_pred eee-eeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeee---------------------------
Confidence 211 11111111111 23567888888889998888888744332221111
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCC-
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQS- 233 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~- 233 (685)
+. ....|..++..+.|+. +.+.+++|+.||.+..||++.
T Consensus 158 ------------------------vq---------------~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 158 ------------------------VQ---------------TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred ------------------------cc---------------cccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 00 1115666677777765 447889999999999999993
Q ss_pred CccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECC-CCceEEEeecCCceeEEEEeecCC-EEEE
Q 005656 234 GISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNG-LLAT 310 (685)
Q Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 310 (685)
+..+.. ....|...|.+|.-+|. +.+++||+.|-.|++||.+ -++++..-...+.|..+..+|.-. .++.
T Consensus 199 ~~~i~~-------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 199 KTFIWH-------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred cceeee-------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHH
Confidence 322222 12378899999988764 6799999999999999998 567777777779999999998644 3333
Q ss_pred EeCCCeEEEEEcCCC--e---eEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEE-EEEcCCCc
Q 005656 311 VADDLVIRLFDVVAL--R---MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLR-IWDVILAR 368 (685)
Q Consensus 311 ~~~dg~I~i~d~~~~--~---~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~-iwd~~~~~ 368 (685)
++..+-.+|.+...+ + .....+.|.+-...-.|......|+|++ .|+.++ +|-..++.
T Consensus 272 ~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 272 ACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred HHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 344444667776654 3 3445567777777777754445788876 677755 77655443
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.26 E-value=4.9e-11 Score=122.35 Aligned_cols=287 Identities=15% Similarity=0.227 Sum_probs=197.0
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeeeEEeecccccCeeEEEEeCCCc---EEEEecCCCcEEEEEecC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDT 77 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~---~l~s~s~D~~v~iWd~~~ 77 (685)
.+++.+++.+|.|+ -+|.++.-| +.+-|+.. +....-+.+-..-.|-.+.|+|... ++++.+. ..-.+|++..
T Consensus 24 ~~~~~a~si~p~gr-di~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGR-DIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccc-hhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc-chhhhhhhhc
Confidence 36788999999998 777887767 66777765 3333333311223477788988543 5555554 4556898876
Q ss_pred CCCCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656 78 TDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 156 (685)
Q Consensus 78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
... ..+-..+.||...|+.+.|+|.. ..+++++.|-.+..||+++.....
T Consensus 101 ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~---------------------------- 151 (1081)
T KOG0309|consen 101 SSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF---------------------------- 151 (1081)
T ss_pred CCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce----------------------------
Confidence 533 24445678999999999999864 478899999999999997654321
Q ss_pred eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656 157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 236 (685)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~ 236 (685)
+.|+ .-......+.|+.....+.+.+....|.+||++.|..
T Consensus 152 ------------------------ys~~---------------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~ 192 (1081)
T KOG0309|consen 152 ------------------------YSTS---------------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST 192 (1081)
T ss_pred ------------------------eeee---------------cccccCceeeecccCcchhhhccCCceEEEeccCCCc
Confidence 1111 1234455677777666677777888899999988765
Q ss_pred ccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECCCC--ceEEEeecCCceeEEEEeecCCEEEEE--
Q 005656 237 RGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATV-- 311 (685)
Q Consensus 237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~-- 311 (685)
..... .+|...|.++.|..- ...+.+++.||+|++||.... ...++.....++..-.+.|-|.-.++-
T Consensus 193 pl~s~-------K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~ 265 (1081)
T KOG0309|consen 193 PLCSL-------KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM 265 (1081)
T ss_pred ceEEe-------cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc
Confidence 43322 278888888888653 346889999999999998743 445555666778777777766522221
Q ss_pred eCCCeEEEEEcC---------C-CeeEEEEecCCCCeEEEEEcCC--------CC--EEEEEeCCCcEEEEEcCC
Q 005656 312 ADDLVIRLFDVV---------A-LRMVRKFEGHTDRITDFCFSED--------GK--WLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 312 ~~dg~I~i~d~~---------~-~~~~~~~~~h~~~I~~l~~spd--------g~--~l~s~s~Dg~I~iwd~~~ 366 (685)
-.+..+.+++.+ + .+++.+|.||...|....|-.. .+ .|+|-|.|.++++|-+.+
T Consensus 266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 122244444433 2 3789999999999887776432 22 699999999999998764
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=4.9e-11 Score=118.36 Aligned_cols=288 Identities=17% Similarity=0.189 Sum_probs=193.8
Q ss_pred cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC---CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEE
Q 005656 43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119 (685)
Q Consensus 43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vw 119 (685)
.||...|..++-..+.+-+++++.|.+|++|.+...... ..+..+...|..+|.++.|..+.++++++ ||.|.+|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW 809 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence 389999999998889999999999999999998764322 23666778999999999999998887765 8899999
Q ss_pred EeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656 120 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 199 (685)
Q Consensus 120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 199 (685)
|.--++...... |. +..
T Consensus 810 DPFigr~Laq~~---------------------------------------------------da------------pk~ 826 (1034)
T KOG4190|consen 810 DPFIGRLLAQME---------------------------------------------------DA------------PKE 826 (1034)
T ss_pred cccccchhHhhh---------------------------------------------------cC------------ccc
Confidence 975544322110 00 000
Q ss_pred CCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656 200 ENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 278 (685)
Q Consensus 200 ~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 278 (685)
+..+.|.|+- +-+...+++| +...+|+++|.+++.....+..- ...+.+.-++++++.+.|++++.+-..|.|.+
T Consensus 827 ~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc---na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~ 902 (1034)
T KOG4190|consen 827 GAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVC---NAPGPNALTRAIAVADKGNKLAAALSNGCIAI 902 (1034)
T ss_pred CCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEec---cCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence 1112222221 2234455555 66789999999998876655311 11256678999999999999999999999999
Q ss_pred EECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEE-EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656 279 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL-FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356 (685)
Q Consensus 279 wd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i-~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D 356 (685)
.|.++|+.+..+..- .....++ .|..+.++....|.++.+ |...++....+.+....+..-+ -.-|.-|+++...
T Consensus 903 LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~G 979 (1034)
T KOG4190|consen 903 LDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNG 979 (1034)
T ss_pred EecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccC
Confidence 999999988876542 3333333 355667777778888888 8877776655554333332211 1235567777776
Q ss_pred CcEEEEEcCC-------CceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEE
Q 005656 357 GSLRIWDVIL-------ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYL 403 (685)
Q Consensus 357 g~I~iwd~~~-------~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~l 403 (685)
..+.+|.-.. -..++.-...+..++++--|-+.-+..|...| .|.+
T Consensus 980 n~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G-~IaL 1032 (1034)
T KOG4190|consen 980 NILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHG-AIAL 1032 (1034)
T ss_pred cEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCC-ceee
Confidence 7778874211 11222223455588888888777677776665 5554
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=6.7e-11 Score=132.39 Aligned_cols=197 Identities=14% Similarity=0.259 Sum_probs=160.9
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~ 83 (685)
.|.++.=+|... +.+||+.||.|++|....+..+...+.+-...|+.+.|+.+|+.+..+..||.+.+|... ++
T Consensus 2210 ~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-----pk 2283 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-----PK 2283 (2439)
T ss_pred ceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-----Cc
Confidence 466677778776 888999999999999999988888876666999999999999999999999999999766 37
Q ss_pred eeEecccCCCCCeEEEEecCCCEEEEEe---CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 84 LLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
++...+.|.......+|-. ..+++++ .++.+.+||..-......+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v------------------------------ 2331 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV------------------------------ 2331 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee------------------------------
Confidence 7888889999999999986 4677765 3678999997432211110
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
+ ..|...++++++-|....+++|+.+|.|++||++..+.++.+
T Consensus 2332 ------------------------------------~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2332 ------------------------------------H-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred ------------------------------------e-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 0 167889999999999999999999999999999988887776
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG 293 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (685)
. . ++ ...++++++..|.++||++....++..+...
T Consensus 2375 ~--------~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2375 Q--------A---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred h--------h---------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 4 1 44 5678999999999999999988777766653
No 280
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.9e-09 Score=106.33 Aligned_cols=271 Identities=10% Similarity=0.093 Sum_probs=164.3
Q ss_pred cEEEEEEccCCCCEEEEEeC-----------CCcEEEEeCCCCeeeEEeec--ccccCeeEEEEeCCCcEEEEecCCCcE
Q 005656 4 AVTALAFSSDGQPLLASGAS-----------SGVISIWNLEKRRLQSVIRE--AHDNAIISLHFFANEPVLMSASADNSI 70 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~-----------dg~I~vwd~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~s~s~D~~v 70 (685)
.|.-+.|||..+ +|+|=+. ...++|||+.+|...+.+.. +....-.-..||.|++++|--.. ++|
T Consensus 251 ~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 251 GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI 328 (698)
T ss_pred CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence 377899999998 8887542 25799999999999888762 11122234689999999998766 578
Q ss_pred EEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-----CCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 71 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 71 ~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
.|++...- .++....-.-..|....|+|.+..|+.=.. -..+.+..+.+.+.++...
T Consensus 329 sIyEtpsf----~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n-------------- 390 (698)
T KOG2314|consen 329 SIYETPSF----MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN-------------- 390 (698)
T ss_pred EEEecCce----eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc--------------
Confidence 99965432 233222233456888899999776653211 0122222222222111110
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe----
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT---- 221 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~---- 221 (685)
-+.-.=..+.|-.+|.+|++-.
T Consensus 391 ------------------------------------------------------lfnVsDckLhWQk~gdyLcvkvdR~t 416 (698)
T KOG2314|consen 391 ------------------------------------------------------LFNVSDCKLHWQKSGDYLCVKVDRHT 416 (698)
T ss_pred ------------------------------------------------------ceeeeccEEEeccCCcEEEEEEEeec
Confidence 0011112234445555555421
Q ss_pred ------cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---CCeEEEEECCCC----ceEE
Q 005656 222 ------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKGR----DLKS 288 (685)
Q Consensus 222 ------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~----~~~~ 288 (685)
.-..+.++.++......... .-...|...+|.|.|..+++-+. ..++.+|.+.+. +++.
T Consensus 417 K~~~~g~f~n~eIfrireKdIpve~v--------elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 417 KSKVKGQFSNLEIFRIREKDIPVEVV--------ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred cccccceEeeEEEEEeeccCCCceee--------ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 11235566655443322211 45678999999999988776553 357888888732 2222
Q ss_pred EeecCCceeEEEEeecCCEEEEEe---CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656 289 RWEVGCSLVKIVYHRVNGLLATVA---DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 289 ~~~~~~~i~~~~~~~~~~~l~~~~---~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg 357 (685)
.+.. ...+.+.|+|.|++++++. ..|.+.++|+.-..+..+-.......+.+.|.|.|+|+++++.-.
T Consensus 489 ~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 489 ELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehh
Confidence 3322 5678899999999887764 478999999885333222221223467889999999999998543
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.24 E-value=1.1e-08 Score=118.45 Aligned_cols=264 Identities=13% Similarity=0.109 Sum_probs=164.4
Q ss_pred eEEEEeCC-CcEEEEecCCCcEEEEEecCCCCCCceeEeccc--------------CCCCCeEEEEecCCCEEEEEeC-C
Q 005656 50 ISLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG--------------HSAPPLCIRFYANGRHILSAGQ-D 113 (685)
Q Consensus 50 ~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~--------------h~~~v~~i~~~~~~~~l~s~s~-d 113 (685)
..++++++ +.++++-+.++.|++||.+.. .+....+ +-..+..+++.++++.|+++.. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-----~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-----FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-----EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 36788874 667777778889999987542 2222111 1234788999998877666654 5
Q ss_pred CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656 114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 193 (685)
Q Consensus 114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 193 (685)
+.|+++|..++.. ..+...... . .+......+..
T Consensus 646 ~~Ir~id~~~~~V-~tlag~G~~-------------------------------------------g--~~~~gg~~~~~ 679 (1057)
T PLN02919 646 HALREIDFVNETV-RTLAGNGTK-------------------------------------------G--SDYQGGKKGTS 679 (1057)
T ss_pred ceEEEEecCCCEE-EEEeccCcc-------------------------------------------c--CCCCCChhhhH
Confidence 6789888766532 222100000 0 00000000000
Q ss_pred eecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCcccccccccccccc------CCCCcCEEEEEEcCCCCE
Q 005656 194 ILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN------YAHNGEVVGVACDSTNTL 266 (685)
Q Consensus 194 ~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~~~~~~~ 266 (685)
..-.....++++| ++...++.+.++.|++||..++.............. ...-....+++++|++..
T Consensus 680 ------~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~ 753 (1057)
T PLN02919 680 ------QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE 753 (1057)
T ss_pred ------hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE
Confidence 0012345789999 455566667789999999987754321100000000 011234678999999985
Q ss_pred E-EEEECCCeEEEEECCCCceEEEee-----------c-----------CCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 005656 267 M-ISAGYHGDIKVWDFKGRDLKSRWE-----------V-----------GCSLVKIVYHRVNGLLATVADDLVIRLFDVV 323 (685)
Q Consensus 267 l-~s~s~dg~i~iwd~~~~~~~~~~~-----------~-----------~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~ 323 (685)
| ++.+.++.|++||+.++....... . -.....++++++|.++++-..++.|++||..
T Consensus 754 LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 754 LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 5 455567899999998765321110 0 0124578999999988888899999999998
Q ss_pred CCeeEEEEe-------------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 324 ALRMVRKFE-------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 324 ~~~~~~~~~-------------~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
++....... +.-.....++++++|+++++-+.++.|++||+.+++..
T Consensus 834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence 876553221 11235788999999998888889999999999988754
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.21 E-value=2.7e-08 Score=115.29 Aligned_cols=261 Identities=14% Similarity=0.115 Sum_probs=162.4
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec-c------------cccCeeEEEEeCCCcEEEEe-cCCCcEEE
Q 005656 7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE-A------------HDNAIISLHFFANEPVLMSA-SADNSIKM 72 (685)
Q Consensus 7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~-~------------h~~~V~~l~~sp~~~~l~s~-s~D~~v~i 72 (685)
.+++++++..++++-+.++.|++||..... +..+.. + +-.....+++.++++.|+.+ ...+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 578887543377777788999999986543 333321 1 11235789999988765554 44567888
Q ss_pred EEecCCCCCCceeEeccc-----------------CCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhh
Q 005656 73 WIFDTTDGDPRLLRFRSG-----------------HSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 134 (685)
Q Consensus 73 Wd~~~~~~~~~~~~~~~~-----------------h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 134 (685)
+|+.++ . +.++.+ .-..+..++|+| ++..+++.+.++.|++||..++........
T Consensus 651 id~~~~----~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~-- 723 (1057)
T PLN02919 651 IDFVNE----T-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD-- 723 (1057)
T ss_pred EecCCC----E-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecC--
Confidence 887553 1 111110 012457899999 465666767789999999866543211000
Q ss_pred HHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC
Q 005656 135 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG 214 (685)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 214 (685)
+.....+ +. . ...........++++|+|
T Consensus 724 -------------------------------------------G~~~~~~------g~-~--~~~~~~~~P~GIavspdG 751 (1057)
T PLN02919 724 -------------------------------------------GYERNLN------GS-S--GTSTSFAQPSGISLSPDL 751 (1057)
T ss_pred -------------------------------------------CccccCC------CC-c--cccccccCccEEEEeCCC
Confidence 0000000 00 0 000112346789999999
Q ss_pred CEEE-EEecCCcEEEEECCCCcccccccccc-----cccc--------CCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656 215 NFAV-LGTAGGWIERFNLQSGISRGSYLDMS-----ERSN--------YAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 280 (685)
Q Consensus 215 ~~l~-~g~~dg~i~~~d~~~~~~~~~~~~~~-----~~~~--------~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 280 (685)
+.++ +.+.++.|++||+.++.......... .... ...-....+++++++|..+++-+.++.|++||
T Consensus 752 ~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD 831 (1057)
T PLN02919 752 KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLD 831 (1057)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEE
Confidence 8555 45567899999998765321110000 0000 00112346899999999888888999999999
Q ss_pred CCCCceEEEeecC--------------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee
Q 005656 281 FKGRDLKSRWEVG--------------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 327 (685)
Q Consensus 281 ~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~ 327 (685)
..++........+ .....++++++|+++++-+.++.|++||+.+++.
T Consensus 832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9887665433211 2467899999999888888999999999998865
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=2.1e-10 Score=128.60 Aligned_cols=237 Identities=13% Similarity=0.118 Sum_probs=171.8
Q ss_pred cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHH
Q 005656 59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 138 (685)
Q Consensus 59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 138 (685)
+....+..++...-|...... . ....+-..|.++.=+|...+.++|+.||.+++|....++.+..+..
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~---~---~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt------ 2248 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGAS---V---MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT------ 2248 (2439)
T ss_pred ccCCcccCCccccceecccce---e---EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec------
Confidence 344444445555555332221 1 2234566788888889888999999999999999877765544432
Q ss_pred HhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEE
Q 005656 139 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV 218 (685)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 218 (685)
..+..++.+.|+.+|+.+.
T Consensus 2249 -------------------------------------------------------------~g~s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2249 -------------------------------------------------------------AGNSRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred -------------------------------------------------------------cCcchhhhhhhcccCCcee
Confidence 2237788999999999999
Q ss_pred EEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE---CCCeEEEEECCCC---ceEEEeec
Q 005656 219 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKGR---DLKSRWEV 292 (685)
Q Consensus 219 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s---~dg~i~iwd~~~~---~~~~~~~~ 292 (685)
++..||.+.+|........ ....|+.....+.|-. ..+++++ .++.+.+||.--. .++. .-|
T Consensus 2268 i~d~dg~l~l~q~~pk~~~---------s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H 2335 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASPKPYT---------SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCH 2335 (2439)
T ss_pred eeccCCceeecccCCccee---------ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eec
Confidence 9999999999998722221 2227888888888865 5566664 5678999996532 2333 455
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeE
Q 005656 293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA 372 (685)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~ 372 (685)
.+.++++++-|..++|++|+.+|.|++||++..+.++.+.. +. ...++++|+..|.++||++..-.++..
T Consensus 2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhc
Confidence 68999999999999999999999999999998887776664 43 456899999999999999998888877
Q ss_pred EeeccceEEEEEcCCCCeE
Q 005656 373 IHVDVSITALSLSPNMDVL 391 (685)
Q Consensus 373 ~~~~~~v~~v~~spdg~~L 391 (685)
+.+...-.++ |-..|..+
T Consensus 2406 ~p~e~ak~gf-Fr~~g~Q~ 2423 (2439)
T KOG1064|consen 2406 FPSEHAKQGF-FRNIGMQI 2423 (2439)
T ss_pred Cchhhcccch-hhhcCcee
Confidence 7654333333 44444333
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.14 E-value=2e-08 Score=105.10 Aligned_cols=261 Identities=14% Similarity=0.076 Sum_probs=159.7
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC-
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP- 95 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v- 95 (685)
.+++++.+|.+..+|..+|+.+.... -.+.+.+.-.. .+..++.++.++.+..||..++. .+..........
T Consensus 107 ~v~v~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~----~~W~~~~~~~~~~ 179 (377)
T TIGR03300 107 LVFVGTEKGEVIALDAEDGKELWRAK--LSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGE----RLWTYSRVTPALT 179 (377)
T ss_pred EEEEEcCCCEEEEEECCCCcEeeeec--cCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCc----eeeEEccCCCcee
Confidence 57778889999999999999887665 22233221111 24466677789999999987763 222221111110
Q ss_pred ----eEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656 96 ----LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 171 (685)
Q Consensus 96 ----~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (685)
.+.... +..++.+..+|.+..+|..+++..........
T Consensus 180 ~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~------------------------------------ 221 (377)
T TIGR03300 180 LRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALP------------------------------------ 221 (377)
T ss_pred ecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccC------------------------------------
Confidence 111111 24677788889999999887765432210000
Q ss_pred EEEcCCceEEEEEcCccccCceeecCCCCCCCCe-EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCC
Q 005656 172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV-KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 250 (685)
Q Consensus 172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 250 (685)
.+.... .....+ .+..+ .+..+++++.+|.++.||..+|+......
T Consensus 222 ------------------~g~~~~----~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--------- 268 (377)
T TIGR03300 222 ------------------KGRTEL----ERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRD--------- 268 (377)
T ss_pred ------------------CCCCch----hhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeec---------
Confidence 000000 000000 00011 25678888899999999999998765442
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCC-ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE
Q 005656 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGC-SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV 328 (685)
Q Consensus 251 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~ 328 (685)
.. ....... .+..++.++.||.+..+|..+++.+.... ... ....... .+..+++++.+|.++++|..+++.+
T Consensus 269 ~~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 269 AS-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred cC-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 11 1112222 35678888889999999999998876653 221 1222222 4678999999999999999999999
Q ss_pred EEEecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEE
Q 005656 329 RKFEGHTDRITD-FCFSEDGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 329 ~~~~~h~~~I~~-l~~spdg~~l~s~s~Dg~I~iw 362 (685)
.++..+...+.. ..+. ++ .|+.++.||.|+.|
T Consensus 344 ~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 344 ARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 988866654332 2332 34 58888899998876
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.3e-08 Score=106.25 Aligned_cols=189 Identities=10% Similarity=-0.032 Sum_probs=128.2
Q ss_pred CeEEEEEccCCCE-EEEEec---CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-EC--CCeE
Q 005656 204 AVKACTISACGNF-AVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GY--HGDI 276 (685)
Q Consensus 204 ~v~~~~~s~~g~~-l~~g~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~--dg~i 276 (685)
......|+|+|+. ++..+. ...|+++|+.+++..... ...+......|+|+|+.++.. +. +..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 6778999999985 554333 357999999888765433 334556677899999877644 33 3568
Q ss_pred EEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656 277 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~ 353 (685)
.++|+.++................|+|||+.|+..+.. + .|+++|+.+++..+..... . ....|||||++|+..
T Consensus 260 y~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~--~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 260 YLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K--NNSSVSTYKNYIVYS 336 (419)
T ss_pred EEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C--cCceECCCCCEEEEE
Confidence 88898888755443333334566899999977776643 2 7888999888764433211 1 124899999998866
Q ss_pred eCC---------CcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 354 GMD---------GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 354 s~D---------g~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+.. ..|.+.|+.++... .+..........|+|||+.++.....++.-.+|.
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 643 36888898888653 3333333446899999999988877665545554
No 286
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.13 E-value=1.1e-08 Score=94.49 Aligned_cols=193 Identities=16% Similarity=0.130 Sum_probs=129.5
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECC-
Q 005656 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK- 282 (685)
Q Consensus 205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~- 282 (685)
..++.|++.+..++++.++|.+.+.+.......... ...+|.-......|+.. .+.+.+||.|+.+..||++
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq------~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQ------TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecc------cccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 567889999999999999999996665544333211 12389999999998764 3688999999999999999
Q ss_pred CCceEEE--eecCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCC-CeeEEEEecCCCCeEEEEEcCC--CCEEEEEeCC
Q 005656 283 GRDLKSR--WEVGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVA-LRMVRKFEGHTDRITDFCFSED--GKWLLSSGMD 356 (685)
Q Consensus 283 ~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~spd--g~~l~s~s~D 356 (685)
.++.+.. ..+...|.++.-+|. ..++++|+.|-.|++||.++ ++++..-. -.+.|..+.++|- ++.|+++-..
T Consensus 198 p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~ 276 (339)
T KOG0280|consen 198 PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN 276 (339)
T ss_pred CcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhc
Confidence 3333332 334578888887764 56999999999999999984 55554433 3478999999994 3344444444
Q ss_pred CcEEEEEcCCCcee--eEEeeccc----eEEEEEcCCCCeEEEEEeCCCeEE-EEE
Q 005656 357 GSLRIWDVILARQI--DAIHVDVS----ITALSLSPNMDVLATAHVDQNGVY-LWV 405 (685)
Q Consensus 357 g~I~iwd~~~~~~i--~~~~~~~~----v~~v~~spdg~~Lat~~~d~~~I~-lW~ 405 (685)
| .+|-+...+..- ..+..+.. +..-.|.....+|||++--++.++ +|-
T Consensus 277 G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 277 G-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred C-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 4 777777654332 12222222 444455444467888654434544 774
No 287
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.12 E-value=1.1e-07 Score=99.96 Aligned_cols=305 Identities=10% Similarity=0.075 Sum_probs=181.6
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCee----------EEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAII----------SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR 86 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~----------~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 86 (685)
.+++++.+|.+.-+|..+|+.+..........+. .+.. ++..++.++.++.+..+|..++...++.
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~-- 146 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT-- 146 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc--
Confidence 5667778899999999999988766522211110 1111 2456677778899999988777433222
Q ss_pred ecccCCCCCeE-EEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656 87 FRSGHSAPPLC-IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 165 (685)
Q Consensus 87 ~~~~h~~~v~~-i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (685)
... ..+.+ ... .+..++.++.+|.+..+|..+++..........
T Consensus 147 --~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~------------------------------ 191 (394)
T PRK11138 147 --KVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP------------------------------ 191 (394)
T ss_pred --cCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC------------------------------
Confidence 111 11111 111 234677788899999999988876554421000
Q ss_pred CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccc
Q 005656 166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE 245 (685)
Q Consensus 166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~ 245 (685)
. . .......++ + .+..+++++.+|.+..+|..+|+....+.....
T Consensus 192 -------------------------~---~-~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~ 236 (394)
T PRK11138 192 -------------------------S---L-TLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQP 236 (394)
T ss_pred -------------------------c---c-cccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccC
Confidence 0 0 000001111 1 134577788899999999999887655421000
Q ss_pred cccCCCC-cCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 005656 246 RSNYAHN-GEVVGVACDS--TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 322 (685)
Q Consensus 246 ~~~~~h~-~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~ 322 (685)
.. .+. .....+..+| .+..++.++.+|.+..+|..+++.+........ ..+ ...+..+++++.+|.+..+|.
T Consensus 237 ~~--~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~--~~~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 237 TG--ATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDF--AVDGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred CC--ccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCc--EEECCEEEEEcCCCeEEEEEC
Confidence 00 000 0001111111 245677777899999999999988776554322 112 234678888889999999999
Q ss_pred CCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec-cceEE-EEEcCCCCeEEEEEeCCC
Q 005656 323 VALRMVRKFEGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITA-LSLSPNMDVLATAHVDQN 399 (685)
Q Consensus 323 ~~~~~~~~~~~h~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~-v~~spdg~~Lat~~~d~~ 399 (685)
.+++.+-....-. ........ .+.+|+.++.||.|++.|..+|+.+...+.. ..+.+ ..+ .+..|++++.||
T Consensus 312 ~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G- 386 (394)
T PRK11138 312 RGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDG- 386 (394)
T ss_pred CCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCc-
Confidence 9998765443211 11222222 2457888899999999999999998877653 22322 222 345788888786
Q ss_pred eEEEEE
Q 005656 400 GVYLWV 405 (685)
Q Consensus 400 ~I~lW~ 405 (685)
.|+.+.
T Consensus 387 ~l~~~~ 392 (394)
T PRK11138 387 TVYAIT 392 (394)
T ss_pred eEEEEe
Confidence 787765
No 288
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.3e-09 Score=106.15 Aligned_cols=254 Identities=16% Similarity=0.225 Sum_probs=180.6
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEee
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVI 122 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~ 122 (685)
-|.+.|+.+.... .+++.+++.||.++.|--..- .....+..+..|...|.+++.+-+|..+.|.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 4788888876554 569999999999999954321 222455666789999999999999999999777 9999999997
Q ss_pred cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656 123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 202 (685)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 202 (685)
+-.....+... ..+
T Consensus 85 n~DminmiKL~------------------------------------------------------------------~lP 98 (558)
T KOG0882|consen 85 NFDMINMIKLV------------------------------------------------------------------DLP 98 (558)
T ss_pred ccchhhhcccc------------------------------------------------------------------cCC
Confidence 65432221100 001
Q ss_pred CCeEEEEEccCC----CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656 203 TAVKACTISACG----NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 278 (685)
Q Consensus 203 ~~v~~~~~s~~g----~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 278 (685)
+.+. .+...| ...+..-.+|.+.++|-....+...+. ..-|..+|..+.+.+.+..+++....|.|..
T Consensus 99 g~a~--wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f------kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy 170 (558)
T KOG0882|consen 99 GFAE--WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF------KKLHFSPVKKIRYNQAGDSAVSIDISGMVEY 170 (558)
T ss_pred CceE--EecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee------cccccCceEEEEeeccccceeeccccceeEe
Confidence 1111 111112 122333457889999877665433321 1279999999999999999999999999999
Q ss_pred EECCC------CceEEEee----------cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec---------
Q 005656 279 WDFKG------RDLKSRWE----------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--------- 333 (685)
Q Consensus 279 wd~~~------~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--------- 333 (685)
|.... ..+...+. ......++.|+|++..+.+-+.|..|++++..+++.++.+..
T Consensus 171 Ws~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ 250 (558)
T KOG0882|consen 171 WSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP 250 (558)
T ss_pred ecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence 99873 11211121 236678999999999999999999999999999887665431
Q ss_pred -----------------------CCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656 334 -----------------------HTD-RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 374 (685)
Q Consensus 334 -----------------------h~~-~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~ 374 (685)
|.. .-+.+.|...|++|+-++.=| |+|.++.++++++.+.
T Consensus 251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 111 345678888999999998776 9999999998887764
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=3.6e-09 Score=98.21 Aligned_cols=332 Identities=16% Similarity=0.248 Sum_probs=194.9
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-----eeEEeecccc------------cCeeEEEEeCCCc--EEEE
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----LQSVIREAHD------------NAIISLHFFANEP--VLMS 63 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~-----~~~~~~~~h~------------~~V~~l~~sp~~~--~l~s 63 (685)
..|+++.|...|. +||||...|.|.+|.-+... ....++ +|. ..|..+.|..++. .++.
T Consensus 27 d~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 27 DKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4699999999998 99999999999999765422 222343 554 4588889987654 4555
Q ss_pred ecCCCcEEEEEecCC------------------CCC---------Cc------ee-----E-ecccCCCCCeEEEEecCC
Q 005656 64 ASADNSIKMWIFDTT------------------DGD---------PR------LL-----R-FRSGHSAPPLCIRFYANG 104 (685)
Q Consensus 64 ~s~D~~v~iWd~~~~------------------~~~---------~~------~~-----~-~~~~h~~~v~~i~~~~~~ 104 (685)
.+.|.+|++|.+... .+. ++ .+ + ....|..-+.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 668999999987543 100 00 00 1 113566777888888777
Q ss_pred CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEE
Q 005656 105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 184 (685)
Q Consensus 105 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 184 (685)
..++++. |-.|.+|++.-...... +-+
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFn----------------------------------------------------IVD 211 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFN----------------------------------------------------IVD 211 (460)
T ss_pred heeeecc-ceeeeeccccccCCceE----------------------------------------------------EEe
Confidence 7776654 66788887753322111 111
Q ss_pred cCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCccccc----c----ccccccccCCCCcCE
Q 005656 185 LQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGS----Y----LDMSERSNYAHNGEV 255 (685)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~----~----~~~~~~~~~~h~~~v 255 (685)
+....+. ....-|++..|+|.. +.+...++.|.|++-|++....... + .........+....|
T Consensus 212 iKP~nme--------eLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSI 283 (460)
T COG5170 212 IKPHNME--------ELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSI 283 (460)
T ss_pred ccCccHH--------HHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhh
Confidence 1111000 112346677788843 5566778889999999984322111 0 000000111334678
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCC-CceEEEeecC-------------Cc---eeEEEEeecCCEEEEEeCCCeEE
Q 005656 256 VGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVG-------------CS---LVKIVYHRVNGLLATVADDLVIR 318 (685)
Q Consensus 256 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~-------------~~---i~~~~~~~~~~~l~~~~~dg~I~ 318 (685)
..+.|+++|+++++-+. -+|++||.+. ..++.++..+ .. -..+.|+-+.+.+.+|+..+..-
T Consensus 284 SD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfg 362 (460)
T COG5170 284 SDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFG 362 (460)
T ss_pred cceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccccccee
Confidence 89999999999887654 6899999984 3455555432 11 23467888888999998888877
Q ss_pred EEEcCCC-----eeEEEEecCCC----------CeEEEE-EcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEE
Q 005656 319 LFDVVAL-----RMVRKFEGHTD----------RITDFC-FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITAL 382 (685)
Q Consensus 319 i~d~~~~-----~~~~~~~~h~~----------~I~~l~-~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v 382 (685)
+|-..+. -.+..+..|.. .|.... ...+.....+.+.+|.+..-.-+ ..+.....|...
T Consensus 363 iyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~~eD~-----d~ld~~k~ilh~ 437 (460)
T COG5170 363 IYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVACEDP-----DNLDLLKKILHR 437 (460)
T ss_pred eeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceeeccCc-----chhHHHHHHHhh
Confidence 7764331 12233332221 111111 11112234445555544332211 222333346677
Q ss_pred EEcCCCCeEEEEEeCCCeEEEEE
Q 005656 383 SLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 383 ~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
.|+|-...+|.+..+ .+++|+
T Consensus 438 sWhp~e~svaiaatn--nlfvfs 458 (460)
T COG5170 438 SWHPFEDSVAIAATN--NLFVFS 458 (460)
T ss_pred ccCCcccceeeeecC--ceEEEe
Confidence 899988888887655 577764
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=8.4e-08 Score=100.22 Aligned_cols=151 Identities=12% Similarity=0.040 Sum_probs=98.4
Q ss_pred CCeEEEEEccCCCEEEEEec---CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CC--eE
Q 005656 203 TAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DI 276 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg--~i 276 (685)
+......|+|||+.++.... +..|+++|+.++...... .+.+......|+|+|+.|+..+. .| .|
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT---------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT---------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNI 303 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc---------cCCCccCccEECCCCCEEEEEECCCCCceE
Confidence 34556779999988776543 357888898887644321 22222345579999988777663 23 68
Q ss_pred EEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC---------CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC
Q 005656 277 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG 347 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg 347 (685)
+++|+.+++..+....... ...|+|+|+.++..... ..|.+.|+.++.. +.+... .......|+|||
T Consensus 304 y~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG 379 (419)
T PRK04043 304 FMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDG 379 (419)
T ss_pred EEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCC
Confidence 8889988776444332222 35899999988776643 3788899988864 344432 233458899999
Q ss_pred CEEEEEeCC-C--cEEEEEcCC
Q 005656 348 KWLLSSGMD-G--SLRIWDVIL 366 (685)
Q Consensus 348 ~~l~s~s~D-g--~I~iwd~~~ 366 (685)
+.|+..+.+ + .+.+.++..
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCC
Confidence 988766533 2 355666543
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=6e-10 Score=110.78 Aligned_cols=279 Identities=15% Similarity=0.224 Sum_probs=178.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-------CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 73 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iW 73 (685)
|+..|.+++--.+.+ -+++++.|.+|++|.++. ..+..+++ .|+.+|.++.|..+-++++++ ||.|.+|
T Consensus 734 H~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIASC--DGGIHLW 809 (1034)
T ss_pred cHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceeeec--cCcceee
Confidence 445555554333333 588999999999999864 33667777 999999999999998888865 8899999
Q ss_pred EecCCCCCCceeEec--ccCCCCCeEEEEecC--CCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656 74 IFDTTDGDPRLLRFR--SGHSAPPLCIRFYAN--GRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 148 (685)
Q Consensus 74 d~~~~~~~~~~~~~~--~~h~~~v~~i~~~~~--~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (685)
|.-.+ +++... ....+.+..+...++ ...++.+ +...+|+++|.+......++..
T Consensus 810 DPFig----r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV---------------- 869 (1034)
T KOG4190|consen 810 DPFIG----RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV---------------- 869 (1034)
T ss_pred ccccc----chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe----------------
Confidence 86554 332211 112233344444444 3333333 6788999999877665444421
Q ss_pred cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656 149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER 228 (685)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~ 228 (685)
.+ .+.....++++++-+.|+.+++|-++|.|.+
T Consensus 870 -------------------------------------cn----------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~ 902 (1034)
T KOG4190|consen 870 -------------------------------------CN----------APGPNALTRAIAVADKGNKLAAALSNGCIAI 902 (1034)
T ss_pred -------------------------------------cc----------CCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence 10 0134566899999999999999999999999
Q ss_pred EECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE-EECCCCceEEEeecC-CceeEEEEeecCC
Q 005656 229 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV-WDFKGRDLKSRWEVG-CSLVKIVYHRVNG 306 (685)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~-~~i~~~~~~~~~~ 306 (685)
.|.++|..+.... .-.-....++ .|..+.++....|.++.+ |..-.+....+...+ .+..-+ ..-|.
T Consensus 903 LDaR~G~vINswr--------pmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgp 971 (1034)
T KOG4190|consen 903 LDARNGKVINSWR--------PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGP 971 (1034)
T ss_pred EecCCCceeccCC--------cccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCc
Confidence 9999998776553 1111222222 355667777778888888 887777665554432 221111 11245
Q ss_pred EEEEEeCCCeEEEEEcCC----CeeEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005656 307 LLATVADDLVIRLFDVVA----LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRI 361 (685)
Q Consensus 307 ~l~~~~~dg~I~i~d~~~----~~~~~~~~--~h~~~I~~l~~spdg~~l~s~s~Dg~I~i 361 (685)
-++++.....+.+|--.. ...+.+++ ...+..++++.-|-+.-+..|...|.|.+
T Consensus 972 SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 972 SLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred eeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 566666666677774211 01112222 24566788888887777777888888875
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.05 E-value=6.8e-07 Score=87.27 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=124.7
Q ss_pred eEEEEEc-cCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC--------Ce
Q 005656 205 VKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------GD 275 (685)
Q Consensus 205 v~~~~~s-~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--------g~ 275 (685)
...+++. ++ ..++++...+ +.++|+.++......... .........+.++++++|++.++.... |.
T Consensus 42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~---~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLP---DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEE---TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeecc---CCCcccCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence 5666777 55 5555555544 566699888654433210 001145678899999999977776543 56
Q ss_pred EEEEECCCCceEEEeecCCceeEEEEeecCCEEE-EEeCCCeEEEEEcCCC-e------eEEEEecCCCCeEEEEEcCCC
Q 005656 276 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA-TVADDLVIRLFDVVAL-R------MVRKFEGHTDRITDFCFSEDG 347 (685)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~I~i~d~~~~-~------~~~~~~~h~~~I~~l~~spdg 347 (685)
|..++.. ++.......-...+.++|+|+++.|+ +-+..+.|..|++... . .+..+....+..-.+++..+|
T Consensus 117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred eEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 7788877 55554444446678999999999665 5566789999998632 1 122222233347889999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeEEeec-cceEEEEE-cCCCCeEEEEE
Q 005656 348 KWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSL-SPNMDVLATAH 395 (685)
Q Consensus 348 ~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~-spdg~~Lat~~ 395 (685)
++.++....+.|.+++-. |+.+..+..+ ..+++++| .++.+.|++++
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 988887788999999966 9999999887 45999999 47777777765
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.04 E-value=7.8e-08 Score=87.84 Aligned_cols=258 Identities=9% Similarity=0.038 Sum_probs=170.0
Q ss_pred CCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeC-----CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656 23 SSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 95 (685)
Q Consensus 23 ~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v 95 (685)
....+-+|++-+.. .+... ..+.|.| ...+|+.||.-|...+|...+.++. +.....|...|
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y--------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h---~~~cd~snn~v 118 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY--------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH---LYQCDVSNNDV 118 (344)
T ss_pred ceeeeEeccccCCchhhEEee--------ecccccchHhhccccEEEeccccceeeeecccCcccc---eeeecccccch
Confidence 34457777765543 22221 3455655 3348999999999999988876532 22333444444
Q ss_pred eEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656 96 LCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 174 (685)
Q Consensus 96 ~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (685)
+-+.=.-+ .--+..++.|.+++++++..+......-
T Consensus 119 ~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h------------------------------------------- 155 (344)
T KOG4532|consen 119 TLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVH------------------------------------------- 155 (344)
T ss_pred hhhhhhcccccceeeccCCcceeEEEEecCcccceee-------------------------------------------
Confidence 33222222 2356778899999999886554322211
Q ss_pred cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc-cc-cccccccccCCCC
Q 005656 175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GS-YLDMSERSNYAHN 252 (685)
Q Consensus 175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~-~~-~~~~~~~~~~~h~ 252 (685)
...-...+++++++++++++.+....|..|.+...... .. +. ...+
T Consensus 156 -------------------------~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-------a~t~ 203 (344)
T KOG4532|consen 156 -------------------------NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-------APTS 203 (344)
T ss_pred -------------------------ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-------cccC
Confidence 01123778999999999999999999999988754322 11 11 1334
Q ss_pred cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE-EE-----eecCCceeEEEEeecCC--EEEEEeCCCeEEEEEcCC
Q 005656 253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SR-----WEVGCSLVKIVYHRVNG--LLATVADDLVIRLFDVVA 324 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~-----~~~~~~i~~~~~~~~~~--~l~~~~~dg~I~i~d~~~ 324 (685)
..-.+..|+..+..+|++..||++.|||++..... .. -.+.+.+..+.|++-|. +|...-.-+.+.+.|+++
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 45578889999999999999999999999864322 11 12348899999998665 666666667899999999
Q ss_pred CeeEEEEe-------cCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656 325 LRMVRKFE-------GHTDR-ITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 325 ~~~~~~~~-------~h~~~-I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~ 367 (685)
++-.+.+. .|... |..-.|+.++.-+.+.+.+. +.=|++.+.
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~sr 333 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSR 333 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecccc
Confidence 86555443 23333 88888888887776666553 556766554
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=1.1e-08 Score=98.92 Aligned_cols=167 Identities=13% Similarity=0.178 Sum_probs=120.8
Q ss_pred eeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEe---ecCc
Q 005656 49 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV---IQDQ 125 (685)
Q Consensus 49 V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~---~~~~ 125 (685)
...+..+++++++|.+..+....++++.......+++... .-....+++.|..+...+..+..-|-+.-+|+ ..+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445667888899998888887788877654333444333 23344566777766666665554444444443 2221
Q ss_pred eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656 126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 205 (685)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 205 (685)
.. +..+|-+-+
T Consensus 144 ~~---------------------------------------------------------------------~~lGhvSml 154 (390)
T KOG3914|consen 144 CE---------------------------------------------------------------------PILGHVSML 154 (390)
T ss_pred cc---------------------------------------------------------------------hhhhhhhhh
Confidence 11 112778889
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 005656 206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 285 (685)
Q Consensus 206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (685)
+.++++||+++++++..|+.|++-....-..+..+.- +|+.-|..++.-++ +.|+++|.|++|++||+.+++
T Consensus 155 ~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-------GH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 155 LDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-------GHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred heeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-------ccHhheeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence 9999999999999999999999998877666666542 89999999999764 558999999999999999999
Q ss_pred eEEEeecC
Q 005656 286 LKSRWEVG 293 (685)
Q Consensus 286 ~~~~~~~~ 293 (685)
.+.++...
T Consensus 227 ~L~t~dl~ 234 (390)
T KOG3914|consen 227 LLDTCDLS 234 (390)
T ss_pred cccccchh
Confidence 88776654
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=2.9e-09 Score=102.77 Aligned_cols=166 Identities=16% Similarity=0.234 Sum_probs=120.5
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEE---EECCCeEEEEEC
Q 005656 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS---AGYHGDIKVWDF 281 (685)
Q Consensus 205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s---~s~dg~i~iwd~ 281 (685)
...+..++.+++++++..+....+++.........+... ..-...-+.+.+..+...+.. .+....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-----~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-----SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-----eecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 445667889999999999998888887665442222110 011122233333333333333 344556667776
Q ss_pred CCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005656 282 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLR 360 (685)
Q Consensus 282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~spdg~~l~s~s~Dg~I~ 360 (685)
..+.....+.|-+.++.++++||+++++++..|..|+|-.....-.+..| -||..-|..++.-++ ..|++||.|++|+
T Consensus 140 ~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 140 DSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR 218 (390)
T ss_pred cccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence 66777777777799999999999999999999999999887766666655 479999999999865 4689999999999
Q ss_pred EEEcCCCceeeEEeec
Q 005656 361 IWDVILARQIDAIHVD 376 (685)
Q Consensus 361 iwd~~~~~~i~~~~~~ 376 (685)
+||+.+|++++++...
T Consensus 219 ~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 219 LWDITSGKLLDTCDLS 234 (390)
T ss_pred EEecccCCcccccchh
Confidence 9999999999877643
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=2.8e-07 Score=85.87 Aligned_cols=242 Identities=12% Similarity=0.184 Sum_probs=130.4
Q ss_pred EEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee---EecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceee
Q 005656 52 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL---RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 128 (685)
Q Consensus 52 l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 128 (685)
++.+.+|++||.. .|..|.|=.....-. .++ ...+.....=..++|+||+..|+.+...|+|+++|+..... .
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~--si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFS--SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-F 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCch--heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-E
Confidence 5567788877765 466666653322211 111 12222233447899999999999999999999999865332 2
Q ss_pred EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656 129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 208 (685)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (685)
.+.... .+ .. .....|..+
T Consensus 79 ~I~p~~---------------------~~------~~----------------------------------d~~~Aiagl 97 (282)
T PF15492_consen 79 VIPPAM---------------------SF------PG----------------------------------DLSDAIAGL 97 (282)
T ss_pred EcCccc---------------------cc------CC----------------------------------ccccceeee
Confidence 222100 00 00 011222333
Q ss_pred EEccC------CCEEEEEecCCcEEEEECCCC-----ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe--
Q 005656 209 TISAC------GNFAVLGTAGGWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD-- 275 (685)
Q Consensus 209 ~~s~~------g~~l~~g~~dg~i~~~d~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~-- 275 (685)
.|.+. ...|++-...|.++-|-+..+ +....+. ....+...|.++.++|..++|+.||....
T Consensus 98 ~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-----f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~ 172 (282)
T PF15492_consen 98 IFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-----FSSHYPHGINSAVYHPKHRLLLVGGCEQNQD 172 (282)
T ss_pred EeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-----ecccCCCceeEEEEcCCCCEEEEeccCCCCC
Confidence 32221 123555555666666654322 1112221 11145678999999999998888764321
Q ss_pred ---------EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCC
Q 005656 276 ---------IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 346 (685)
Q Consensus 276 ---------i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spd 346 (685)
+..|.+-++.+ -.......+...-.... +-.+|.+-+.+...........|..|..|||
T Consensus 173 ~~s~a~~~GLtaWRiL~~~P---------yyk~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 173 GMSKASSCGLTAWRILSDSP---------YYKQVTSSEDDITASSK---RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred ccccccccCceEEEEcCCCC---------cEEEccccCcccccccc---ccceeeccceeeeeccccCCCceEEEEECCC
Confidence 22222222111 11111111111111111 1123333332222222234567999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeEEee
Q 005656 347 GKWLLSSGMDGSLRIWDVILARQIDAIHV 375 (685)
Q Consensus 347 g~~l~s~s~Dg~I~iwd~~~~~~i~~~~~ 375 (685)
|..||+...+|.|.+|++++-++...+..
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999999887776654
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.96 E-value=1.9e-07 Score=85.44 Aligned_cols=222 Identities=11% Similarity=0.055 Sum_probs=149.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEEEEEecCCCCCCceeEecccCCC--
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA-- 93 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~-- 93 (685)
+||.|+..|...+|...+.+....+-..|...|+-+.=.-+ .--+..++.|.++++.+++.+..... .|..
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~------~h~~~~ 159 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA------VHNQNL 159 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce------eecccc
Confidence 78999999999999998766544443355554443322222 22566678899999999887643221 2333
Q ss_pred CCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE
Q 005656 94 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 173 (685)
Q Consensus 94 ~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (685)
.+.++.+++|++++++.+....|..|.+........-.
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~------------------------------------------ 197 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI------------------------------------------ 197 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee------------------------------------------
Confidence 37889999999999999999999999886543211100
Q ss_pred EcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc
Q 005656 174 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 253 (685)
Q Consensus 174 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~ 253 (685)
........--+..|+.....+++++.||.+.+||++........... ....|.+
T Consensus 198 -----------------------~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss---trp~hnG 251 (344)
T KOG4532|consen 198 -----------------------YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS---TRPHHNG 251 (344)
T ss_pred -----------------------EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc---cCCCCCC
Confidence 00022344557789999999999999999999999876554433221 2236999
Q ss_pred CEEEEEEcCCC--CEEEEEECCCeEEEEECCCCceEEEeecC---------CceeEEEEeecCCEEEEEe
Q 005656 254 EVVGVACDSTN--TLMISAGYHGDIKVWDFKGRDLKSRWEVG---------CSLVKIVYHRVNGLLATVA 312 (685)
Q Consensus 254 ~v~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~ 312 (685)
.++.+.|++.| .+|+..-.-+.+.+.|+++++-.+.+... ..|....|+.++.-+.+..
T Consensus 252 a~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 252 AFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 99999999866 34555555688999999988765554332 1245555555555444443
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.90 E-value=6.8e-08 Score=87.86 Aligned_cols=256 Identities=18% Similarity=0.198 Sum_probs=146.9
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEE------------eecccccCeeEEEEeCCCcEEEEecCCCcEEE
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV------------IREAHDNAIISLHFFANEPVLMSASADNSIKM 72 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~------------~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~i 72 (685)
|+.+.|+.+- .|+++..++.+.......+.++.. +. .|.++-.+-+.+--+..++++..||.+.+
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a-~~sep~p~~~~s~~~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLA-KNSEIDPNDACTMTDNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEechhhcccCcCceeeee-ccCCCCCcccccccCCceEecCCCceEEE
Confidence 6777777654 588888888777776555444322 22 34333333333445678999999999999
Q ss_pred EEecCCCCCCceeEecc-cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656 73 WIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 151 (685)
Q Consensus 73 Wd~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (685)
.+.+..- +..+... .|.+ -.+.++...++.+.+++ +-.|+.....
T Consensus 116 ~s~~~~~---~~~~~i~~~~~~-~as~~~~~~~~~i~s~~----~g~~n~~d~~-------------------------- 161 (319)
T KOG4714|consen 116 FSTDKDL---ALMSRIPSIHSG-SASRKICRHGNSILSGG----CGNWNAQDNF-------------------------- 161 (319)
T ss_pred EechHHH---hhhhhccccccc-ccccceeecccEEecCC----cceEeeccce--------------------------
Confidence 9776421 1111111 1211 12233333455554432 3333332221
Q ss_pred CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEE
Q 005656 152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFN 230 (685)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d 230 (685)
+.|+++.... +.+.......|++++-+|. .+.+++|+.+|.+.+||
T Consensus 162 -----------------------------~a~~~~p~~t----~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d 208 (319)
T KOG4714|consen 162 -----------------------------YANTLDPIKT----LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWD 208 (319)
T ss_pred -----------------------------eeeccccccc----ccccccccccchhhhCCcccccEEEEecCCCeEEEEE
Confidence 1222221111 1111122334888999985 45678899999999999
Q ss_pred CCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEE
Q 005656 231 LQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 309 (685)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 309 (685)
++.......+. ..|+.+++.+-|+|. +..|++++.||.+..||..+. .|.
T Consensus 209 ~rn~~~p~S~l-------~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~----------------------~l~ 259 (319)
T KOG4714|consen 209 ARNVAMPVSLL-------KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT----------------------FLS 259 (319)
T ss_pred cccccchHHHH-------HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc----------------------eEE
Confidence 99886555543 389999999999995 478999999999999997751 111
Q ss_pred EEeCCCeEEEEEcCCCeeEEE-------EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 310 TVADDLVIRLFDVVALRMVRK-------FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 310 ~~~~dg~I~i~d~~~~~~~~~-------~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
++.....+..|= ++.+++. +..-...|+.+.. -|..|++|+.-+.|++++
T Consensus 260 i~~~~s~~s~WL--sgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWL--SGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccc--cCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 111112233331 1111111 1112233555444 678899999888898875
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=4.7e-08 Score=90.98 Aligned_cols=293 Identities=12% Similarity=0.183 Sum_probs=174.0
Q ss_pred cccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC-CCCceeEecccCC------------CCCeEEEEecCC--CEEEE
Q 005656 45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-GDPRLLRFRSGHS------------APPLCIRFYANG--RHILS 109 (685)
Q Consensus 45 h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~~~~~h~------------~~v~~i~~~~~~--~~l~s 109 (685)
....|+++.|...|.+|++|...|.|.++.-.... ...+.+..+++|. ..|..|.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999644332 2234444556664 357888888763 36777
Q ss_pred EeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc-ccccCCcceEEEEcCCceEEEEEcCcc
Q 005656 110 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE-IRERDWCNVVTCHMDTAQAYVWRLQNF 188 (685)
Q Consensus 110 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~ 188 (685)
.+.|.+|++|.+..... +...+..+.... ....-.|++....-. .|-.....++++..
T Consensus 105 stNdktiKlWKiyeknl-k~va~nnls~~~-------~~~~~g~~~s~~~l~lprls~hd~iiaa~p------------- 163 (460)
T COG5170 105 STNDKTIKLWKIYEKNL-KVVAENNLSDSF-------HSPMGGPLTSTKELLLPRLSEHDEIIAAKP------------- 163 (460)
T ss_pred ecCCceeeeeeeecccc-hhhhcccccccc-------ccccCCCcCCHHHhhcccccccceEEEecc-------------
Confidence 78899999999865422 111111111000 000000111000000 00011111111110
Q ss_pred ccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEE
Q 005656 189 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLM 267 (685)
Q Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l 267 (685)
.......|+..+.++.+..+...++++ .+-.|.+|++.-......+..........-..-|++..|+|.. ..+
T Consensus 164 -----~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f 237 (460)
T COG5170 164 -----CRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF 237 (460)
T ss_pred -----ceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE
Confidence 000112667788999999988877765 4567889987643332222211100000112357888898864 556
Q ss_pred EEEECCCeEEEEECCCCceE------E--Ee---ec------CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEE
Q 005656 268 ISAGYHGDIKVWDFKGRDLK------S--RW---EV------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVR 329 (685)
Q Consensus 268 ~s~s~dg~i~iwd~~~~~~~------~--~~---~~------~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~ 329 (685)
..++..|.|++-|++...+- . ++ .+ -..|..+.|+++|+++++-.. .+|+|||+... .++.
T Consensus 238 mYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 238 MYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred EEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 66777899999999843211 0 11 11 167889999999999887643 58999999754 5677
Q ss_pred EEecCC------------CCe---EEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 330 KFEGHT------------DRI---TDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 330 ~~~~h~------------~~I---~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
++.-|. ..| ..+.||.|.+.+.+|+..+..-+|-..
T Consensus 317 Ti~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 317 TIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 765443 223 347889999999999988887777643
No 300
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.2e-07 Score=99.58 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=86.1
Q ss_pred EEEEccCCCCEEEEEe----CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 7 ALAFSSDGQPLLASGA----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 7 ~l~fspdg~~~latg~----~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
-.+|+|... ++|+++ ..|+|.||- ++|++..... -.-.+++++|+|..-.|+.|-.-|.+.+|...+.
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---- 91 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---- 91 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCc----
Confidence 457999877 898876 568999984 5555433322 1223567999999889999989999999976654
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
+.......|..+|..+.|+++|..++++..-|.+.+|....
T Consensus 92 e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 44555668999999999999999999999999999998763
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.87 E-value=1.2e-06 Score=85.09 Aligned_cols=231 Identities=12% Similarity=0.059 Sum_probs=141.0
Q ss_pred CCcEEEEeCCCCeeeEEeeccc-ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec
Q 005656 24 SGVISIWNLEKRRLQSVIREAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 102 (685)
Q Consensus 24 dg~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 102 (685)
+|.|..||..+|+.+.....+. .....+. ..+++..+++++.++.+..||..++ +.+..... ..++.... ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG----~~~W~~~~-~~~~~~~~-~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTG----KVLWRFDL-PGPISGAP-VV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTS----EEEEEEEC-SSCGGSGE-EE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCC----CEEEEeec-ccccccee-ee
Confidence 6889999999999988876221 1222211 3335667777788999999998777 44433332 22222212 22
Q ss_pred CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEE
Q 005656 103 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 182 (685)
Q Consensus 103 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (685)
++..++.++.++.+..+|..+++.........
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~------------------------------------------------ 106 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS------------------------------------------------ 106 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-S------------------------------------------------
T ss_pred cccccccccceeeeEecccCCcceeeeecccc------------------------------------------------
Confidence 45567777788899999988887655521000
Q ss_pred EEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCC---CCcCEEEEE
Q 005656 183 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA---HNGEVVGVA 259 (685)
Q Consensus 183 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~ 259 (685)
.+... ..........++.++++..+|.|..+|+.+|+.+..+...... ... ....+.+-.
T Consensus 107 ---------------~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 107 ---------------SPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR-GSSPISSFSDINGSP 169 (238)
T ss_dssp ---------------SCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEE
T ss_pred ---------------ccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC-CCcceeeecccccce
Confidence 00000 1112222233888999999999999999999987766421100 000 011122333
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE
Q 005656 260 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 329 (685)
Q Consensus 260 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~ 329 (685)
+..++ .++.++.++.+..+|+.+++.+.... ...+.. .....+..+++++.++.+..||+.+|+.+-
T Consensus 170 ~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 170 VISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 33344 67777777754444999998665433 222222 245678888888899999999999998764
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.85 E-value=5.1e-06 Score=81.11 Aligned_cols=220 Identities=15% Similarity=0.120 Sum_probs=141.9
Q ss_pred EEEEeC-CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEe-cCCCEEEEEeCCCceEEEEeecCceee
Q 005656 51 SLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSVIQDQQSR 128 (685)
Q Consensus 51 ~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~ 128 (685)
++.|.+ ++.++++--..+.|..|+...+ .... ... .. ...+.+. +++ .++.+...+ +.++|..+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----~~~~-~~~-~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----EVEV-IDL-PG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----EEEE-EES-SS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----eEEE-Eec-CC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEE
Confidence 578888 7777777777888998887665 2221 111 11 6778888 565 555555544 5566876664332
Q ss_pred EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656 129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 208 (685)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (685)
..... ...........+
T Consensus 75 ~~~~~---------------------------------------------------------------~~~~~~~~~ND~ 91 (246)
T PF08450_consen 75 LADLP---------------------------------------------------------------DGGVPFNRPNDV 91 (246)
T ss_dssp EEEEE---------------------------------------------------------------TTCSCTEEEEEE
T ss_pred Eeecc---------------------------------------------------------------CCCcccCCCceE
Confidence 22100 000134557789
Q ss_pred EEccCCCEEEEEecC--------CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeEEEE
Q 005656 209 TISACGNFAVLGTAG--------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVW 279 (685)
Q Consensus 209 ~~s~~g~~l~~g~~d--------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iw 279 (685)
++.++|++.++.... |.|+.++.. ++..... ..-...++++|+|+++.|+ +-+..+.|..+
T Consensus 92 ~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~---------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~ 161 (246)
T PF08450_consen 92 AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA---------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRF 161 (246)
T ss_dssp EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE---------EEESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe---------cCcccccceEECCcchheeecccccceeEEE
Confidence 999999966655433 568888887 4433322 2345578999999998776 45577889999
Q ss_pred ECCCCc--eE--EEe-ecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEc-CCCCEE
Q 005656 280 DFKGRD--LK--SRW-EVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS-EDGKWL 350 (685)
Q Consensus 280 d~~~~~--~~--~~~-~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s-pdg~~l 350 (685)
++.... .. ..+ ... ...-.+++..+|++.++....+.|.++|.+ |+.+..+.-....+++++|. ++.+.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp EEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred eccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEE
Confidence 986322 11 112 222 247789999999988888889999999988 88888887666689999994 676665
Q ss_pred EEE
Q 005656 351 LSS 353 (685)
Q Consensus 351 ~s~ 353 (685)
+..
T Consensus 241 ~vT 243 (246)
T PF08450_consen 241 YVT 243 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 303
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.85 E-value=8.5e-07 Score=93.25 Aligned_cols=123 Identities=12% Similarity=0.051 Sum_probs=92.9
Q ss_pred CCeEEEEECCC-----CceEEEeecCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCee------------EEEEecC
Q 005656 273 HGDIKVWDFKG-----RDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRM------------VRKFEGH 334 (685)
Q Consensus 273 dg~i~iwd~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~------------~~~~~~h 334 (685)
++.|.+.|..+ ......+..+.....+.++|||+++++++. +++|.|+|+.+.+. +.+..--
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 46789999887 567777888888999999999997776654 88999999988552 4444433
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----------CceeeEEeeccceEEEEE------cCCCCeEEEEEe
Q 005656 335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL----------ARQIDAIHVDVSITALSL------SPNMDVLATAHV 396 (685)
Q Consensus 335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~----------~~~i~~~~~~~~v~~v~~------spdg~~Lat~~~ 396 (685)
.+ ....+|.++|....|..-|..|..|++.. ...++.+..+..+-.+.- .|||+||++...
T Consensus 375 lG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 375 LG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred CC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 33 34678999998888888999999999986 345555655555444444 789999998853
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.83 E-value=5.8e-06 Score=77.25 Aligned_cols=245 Identities=16% Similarity=0.176 Sum_probs=140.2
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCC--eeeEEee--cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 7 ALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIR--EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 7 ~l~fspdg~~~latg~~dg~I~vwd~~~~--~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
.++.+.||+ +||+- .|..|.|-..+.. ..+...+ ....-.=+-++||||+.+||.+...|+|+++|+...
T Consensus 2 ~~~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~---- 75 (282)
T PF15492_consen 2 HLALSSDGK-LLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS---- 75 (282)
T ss_pred ceeecCCCc-EEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc----
Confidence 367789999 77764 5777888765542 2223222 122234578999999999999999999999998653
Q ss_pred ceeEec------ccCCCCCeEEEEecC------CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccc
Q 005656 83 RLLRFR------SGHSAPPLCIRFYAN------GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK 150 (685)
Q Consensus 83 ~~~~~~------~~h~~~v~~i~~~~~------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (685)
.+...- ..-...|..+.|.+. ...|+....+|.++-|-+..+.... +
T Consensus 76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-y-------------------- 134 (282)
T PF15492_consen 76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-Y-------------------- 134 (282)
T ss_pred eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-c--------------------
Confidence 121111 112345666666542 2246666677777766653221000 0
Q ss_pred cCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 005656 151 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN 230 (685)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d 230 (685)
...+.+......+..|.++.++|.-+.|++|+....
T Consensus 135 ---------------------------------------~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~----- 170 (282)
T PF15492_consen 135 ---------------------------------------QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN----- 170 (282)
T ss_pred ---------------------------------------eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC-----
Confidence 000111111145778999999999999888765422
Q ss_pred CCCCccccccccccccccCCCCcCEEEEEEcCCCCE--EEEEECCC------eEEEEECCCCceEEE-eecCCceeEEEE
Q 005656 231 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL--MISAGYHG------DIKVWDFKGRDLKSR-WEVGCSLVKIVY 301 (685)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~--l~s~s~dg------~i~iwd~~~~~~~~~-~~~~~~i~~~~~ 301 (685)
+.+.. .+....+++-.+-.+..+ .++...|+ +..+|.+-+.+.... ......|..|..
T Consensus 171 -~~~~s------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 171 -QDGMS------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred -CCccc------------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 00000 011122222222111111 11222121 123344333222211 223478999999
Q ss_pred eecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC
Q 005656 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT 335 (685)
Q Consensus 302 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~ 335 (685)
+|||..||+...+|.|.+|++.+-++.+.+..+.
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 9999999999999999999999988877776443
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.3e-07 Score=92.46 Aligned_cols=257 Identities=14% Similarity=0.100 Sum_probs=172.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC---CeeeEEeecccccCeeEEEEeCCCcEEEEecC-CCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~---~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~~v~iWd~~ 76 (685)
|++-|+.+.-+.. + ++.+++.||.++.|.-.. -+.+..++ .|.+.|.+++.+-++.++.|.+. |..++++|+.
T Consensus 8 hrd~i~hv~~tka-~-fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPTKA-K-FIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeeehh-h-eEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 7778888866653 4 899999999999997543 23344444 89999999999999999999777 9999999987
Q ss_pred CCCCCCceeEecccCCCCCeEEEEec-CC--C-EEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYA-NG--R-HIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 151 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~-~~--~-~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (685)
.-+-.. .++ -...+..+.|.. .| . .++ +.-.+|.+.++|-..+.+....
T Consensus 85 n~Dmin-miK----L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~--------------------- 138 (558)
T KOG0882|consen 85 NFDMIN-MIK----LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY--------------------- 138 (558)
T ss_pred ccchhh-hcc----cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce---------------------
Confidence 653210 011 111122233322 22 1 222 3334677888875443321111
Q ss_pred CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 005656 152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 231 (685)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~ 231 (685)
....|..+|.++-+++.+..+++....|.|.-|..
T Consensus 139 ---------------------------------------------fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 139 ---------------------------------------------FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSA 173 (558)
T ss_pred ---------------------------------------------ecccccCceEEEEeeccccceeeccccceeEeecC
Confidence 01156789999999999999999999999999987
Q ss_pred CC-Cc-----ccccccc-ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec------------
Q 005656 232 QS-GI-----SRGSYLD-MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------------ 292 (685)
Q Consensus 232 ~~-~~-----~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------ 292 (685)
.. -+ ....+.. ..............++.|+|++..+.+-+.|..|++++++++++++.+.-
T Consensus 174 e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~ 253 (558)
T KOG0882|consen 174 EGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSP 253 (558)
T ss_pred CCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccc
Confidence 73 11 1111100 00001113345678999999999999999999999999999876654321
Q ss_pred ----------------------CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe
Q 005656 293 ----------------------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 332 (685)
Q Consensus 293 ----------------------~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 332 (685)
....+.+.|...|++|+.|+-=| |++.++.++++++.+-
T Consensus 254 y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 254 YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 02235567777888888877544 8899999998888764
No 306
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=2.3e-06 Score=89.86 Aligned_cols=262 Identities=12% Similarity=0.043 Sum_probs=155.3
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeE-EEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 95 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v 95 (685)
.++.++.+|.+..+|.++|+.+.... .. +.+.+ .... +..++.++.++.+.-+|..++. .+-..... .+.
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~-~~-~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~----~~W~~~~~-~~~ 192 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTK-VA-GEALSRPVVS--DGLVLVHTSNGMLQALNESDGA----VKWTVNLD-VPS 192 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCccccc-CC-CceecCCEEE--CCEEEEECCCCEEEEEEccCCC----EeeeecCC-CCc
Confidence 46677788999999999999887765 22 22222 1121 3456667778888888887773 32222111 110
Q ss_pred eEE--EEec--CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656 96 LCI--RFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 171 (685)
Q Consensus 96 ~~i--~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (685)
..+ .-+| .+..++.++.+|.+..+|..+++..........
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~------------------------------------ 236 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQP------------------------------------ 236 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccC------------------------------------
Confidence 000 0011 123567777889898888877765433210000
Q ss_pred EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc--CCCEEEEEecCCcEEEEECCCCccccccccccccccC
Q 005656 172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 249 (685)
Q Consensus 172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 249 (685)
.+. ........+..+| .+..+++++.+|.++.+|..+|+.+.....
T Consensus 237 ------------------~~~-------~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~------- 284 (394)
T PRK11138 237 ------------------TGA-------TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY------- 284 (394)
T ss_pred ------------------CCc-------cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-------
Confidence 000 0000000000111 256777888899999999999987654321
Q ss_pred CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee
Q 005656 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 327 (685)
Q Consensus 250 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~ 327 (685)
+. ...+.. .+..++.++.+|.+..+|..+++.+..... ......... .+..+++++.+|.++.+|..+|+.
T Consensus 285 ~~---~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 285 GS---VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred CC---ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 11 111222 355677888899999999999987665432 111222222 266788899999999999999998
Q ss_pred EEEEecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 328 VRKFEGHTDRITD-FCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 328 ~~~~~~h~~~I~~-l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
+...+-....+.. ..+ .+..|+.++.||.|+.++.
T Consensus 358 ~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 358 VAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 8877644333322 222 3447888899999988875
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.81 E-value=3.7e-06 Score=81.76 Aligned_cols=150 Identities=17% Similarity=0.077 Sum_probs=98.1
Q ss_pred CCCEEEEEecCCcEEEEECCCCcccccc-ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee
Q 005656 213 CGNFAVLGTAGGWIERFNLQSGISRGSY-LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE 291 (685)
Q Consensus 213 ~g~~l~~g~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (685)
.+..+++++.++.++.+|..+|+..... .... . ... ..........+..++.+..++.|..+|.++|+.+....
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-P---PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-C---TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred cccccccccceeeeEecccCCcceeeeeccccc-c---ccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee
Confidence 4567777888889999999999988773 2110 0 111 11122222237788888889999999999999988776
Q ss_pred cCCce-----------eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005656 292 VGCSL-----------VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 360 (685)
Q Consensus 292 ~~~~i-----------~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~ 360 (685)
...+- ..-....++ .++++..++.+.-+|+.+++.+.... ...+.. ....++..|+.++.++.|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEE
Confidence 64211 122222234 77777777754444999998664333 222333 1456778888888999999
Q ss_pred EEEcCCCceee
Q 005656 361 IWDVILARQID 371 (685)
Q Consensus 361 iwd~~~~~~i~ 371 (685)
.||+.+|+.+-
T Consensus 226 ~~d~~tG~~~W 236 (238)
T PF13360_consen 226 ALDLKTGKVVW 236 (238)
T ss_dssp EEETTTTEEEE
T ss_pred EEECCCCCEEe
Confidence 99999998764
No 308
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.80 E-value=5.1e-06 Score=81.06 Aligned_cols=270 Identities=13% Similarity=0.197 Sum_probs=160.0
Q ss_pred CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC----------CCcEEEEEecCCCCCCceeEecccC---
Q 005656 25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----------DNSIKMWIFDTTDGDPRLLRFRSGH--- 91 (685)
Q Consensus 25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----------D~~v~iWd~~~~~~~~~~~~~~~~h--- 91 (685)
+.+.|+|.++++.+..+..+..+ .+..+|+++.+++++. .-.|.+||..+-.....+. ....|
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~---~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~-iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG---NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE-IPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE---EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-ETTS-B--
T ss_pred ceEEEEECCCCcEEEEeecccCC---ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-cCCcchhe
Confidence 57999999999999888755444 4668999998887542 3368899887652211111 11111
Q ss_pred -CCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCc
Q 005656 92 -SAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 168 (685)
Q Consensus 92 -~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (685)
......++++.||++++.... ...|.|.|+...+...++..+
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----------------------------------- 137 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----------------------------------- 137 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----------------------------------
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----------------------------------
Confidence 122345677888887776532 346777777777666555321
Q ss_pred ceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECC-CCcccccccccccc
Q 005656 169 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSER 246 (685)
Q Consensus 169 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~-~~~~~~~~~~~~~~ 246 (685)
+ |..+-|. .+-+..-|.||.+..+.+. .|+.......
T Consensus 138 ----------------------------------G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~---- 176 (342)
T PF06433_consen 138 ----------------------------------G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK---- 176 (342)
T ss_dssp ----------------------------------S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE----
T ss_pred ----------------------------------C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc----
Confidence 1 1111111 1345666777777777776 3433311110
Q ss_pred ccCCCCcCE-EEEEEcCCCCEEEEEECCCeEEEEECCCCceEE--Eeec-----------CCceeEEEEeecCCEEEEEe
Q 005656 247 SNYAHNGEV-VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV-----------GCSLVKIVYHRVNGLLATVA 312 (685)
Q Consensus 247 ~~~~h~~~v-~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~-----------~~~i~~~~~~~~~~~l~~~~ 312 (685)
....-..++ ..-++...+..++..+.+|.|+--|+....... .+.. ++.-.-+++++..+.|++..
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 111222222 233444455556667888999998887654322 2211 14455688888777666543
Q ss_pred CCC----------eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCceeeEEee
Q 005656 313 DDL----------VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDGSLRIWDVILARQIDAIHV 375 (685)
Q Consensus 313 ~dg----------~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s-~Dg~I~iwd~~~~~~i~~~~~ 375 (685)
..| .|.+||+.+++.++++.. ..++.+|+.+.|.+ +|++.+ .++.+.+||..+|+.++.+..
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 221 688999999999999873 24588999999776 665544 589999999999999998864
No 309
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.79 E-value=6.2e-06 Score=84.99 Aligned_cols=302 Identities=12% Similarity=0.101 Sum_probs=164.3
Q ss_pred ccCCCCEEEEE--------eCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 11 SSDGQPLLASG--------ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 11 spdg~~~latg--------~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
||||+.+|+.. +..+.+.|||+++++...... . ...+....|||+|+.++... ++.|.+++...+ ..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~--~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-P-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG--QE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS--EE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-C-ccccccceeecCCCeeEEEe-cCceEEEECCCC--Ce
Confidence 68998444421 234789999999988776654 2 67899999999999998875 567888865443 11
Q ss_pred ceeEeccc-------C---------CCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 83 RLLRFRSG-------H---------SAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 83 ~~~~~~~~-------h---------~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
..+.. .| - -+.-..+-|||||++|+.... +..|+.+.+........
T Consensus 76 ~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---------------- 138 (353)
T PF00930_consen 76 TQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---------------- 138 (353)
T ss_dssp EESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----------------
T ss_pred EEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----------------
Confidence 11111 11 0 123467889999999987654 45566555432111000
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW 225 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 225 (685)
....+..+.+-.-|..- ..-.
T Consensus 139 -------------------------------------------------------~yp~~~~~~YPk~G~~n----p~v~ 159 (353)
T PF00930_consen 139 -------------------------------------------------------QYPEVESIRYPKAGDPN----PRVS 159 (353)
T ss_dssp -------------------------------------------------------SS-EEEEEE--BTTS-------EEE
T ss_pred -------------------------------------------------------cCCcccccccCCCCCcC----CceE
Confidence 00001111110001000 0013
Q ss_pred EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE--ECCC---eEEEEECCCCceEEEee--cC---Cc
Q 005656 226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--GYHG---DIKVWDFKGRDLKSRWE--VG---CS 295 (685)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--s~dg---~i~iwd~~~~~~~~~~~--~~---~~ 295 (685)
+.++|+.+++....-.. . ....-...+..+.|.+++..++.. ..+. .+.++|..++....... .+ ..
T Consensus 160 l~v~~~~~~~~~~~~~~--~-~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPP--N-SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEESSSTCCCEE-----H-HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred EEEEECCCCcEEEeeec--c-ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 66778877765421100 0 001345678899999998844433 3322 46777887765443332 22 22
Q ss_pred eeEEEEe-ecCC-EEEEEeCCC--eEEEEEcCCCeeEEEEecCCCCeEE-EEEcCCCCEEE-EEeCC--C--cEEEEEcC
Q 005656 296 LVKIVYH-RVNG-LLATVADDL--VIRLFDVVALRMVRKFEGHTDRITD-FCFSEDGKWLL-SSGMD--G--SLRIWDVI 365 (685)
Q Consensus 296 i~~~~~~-~~~~-~l~~~~~dg--~I~i~d~~~~~~~~~~~~h~~~I~~-l~~spdg~~l~-s~s~D--g--~I~iwd~~ 365 (685)
.....+. +++. ++.....+| .|++++...+. .+.+....-.|+. +.|+++++.|. +|..+ + .|+.-++.
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 2355554 5555 555555676 56666766666 4456555666755 67888877665 55442 2 45555666
Q ss_pred CCceeeEEeeccce-EEEEEcCCCCeEEEEEeC
Q 005656 366 LARQIDAIHVDVSI-TALSLSPNMDVLATAHVD 397 (685)
Q Consensus 366 ~~~~i~~~~~~~~v-~~v~~spdg~~Lat~~~d 397 (685)
.+..+..+...... ..+.|||+|++++..+..
T Consensus 316 ~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 316 SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred CCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 34455566555444 499999999999887654
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=3.8e-07 Score=95.84 Aligned_cols=179 Identities=15% Similarity=0.180 Sum_probs=138.1
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 282 (685)
..++|++++ +++++.|+.+|.|++++.+... ...+ .|... +..|.++++|+.||+|.|-.+-
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---------~~s~~------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---------DHSSS------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---------ccccc------ccCCceEEEecCCCcEEEeecc
Confidence 345566655 6899999999999999877553 2222 44433 6689999999999999999999
Q ss_pred CCceEEEeecCCceeEEEEeec-----CCEEEEEeCCCeEEEEEcC---CCeeEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 005656 283 GRDLKSRWEVGCSLVKIVYHRV-----NGLLATVADDLVIRLFDVV---ALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 283 ~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~I~i~d~~---~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s 354 (685)
+.+...++..+.++.+++++|+ .+.+++|+.-| +.++.-. ....+ .+..-.++|.++.| .|.++|-++
T Consensus 102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred CCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEec
Confidence 9999999999999999999998 56889999888 7776532 12222 45556789999999 688999999
Q ss_pred CCCcEEEEEcCCCceeeEEeeccc-------eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 355 MDGSLRIWDVILARQIDAIHVDVS-------ITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 355 ~Dg~I~iwd~~~~~~i~~~~~~~~-------v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.+| |+|||+.+++.+..+..+.. ...+.|.++. .|+.|=.| +|+|...+
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d--~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD--SVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC--eEEEEEEe
Confidence 888 99999999998887764432 4567787664 56666555 78888776
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.78 E-value=1.1e-05 Score=77.96 Aligned_cols=250 Identities=15% Similarity=0.135 Sum_probs=161.2
Q ss_pred cEEEEEEccCCCCEEEEEeCCC-cEEEEeCCCCeeeEEeecccccCe--eEEEEeCCCcEEEEecC-----CCcEEEEEe
Q 005656 4 AVTALAFSSDGQPLLASGASSG-VISIWNLEKRRLQSVIREAHDNAI--ISLHFFANEPVLMSASA-----DNSIKMWIF 75 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg-~I~vwd~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~s~s~-----D~~v~iWd~ 75 (685)
....++.+|+....+|.+-.-| ...+||..+++....+. ...+.- -.-.||+||++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-APPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-CCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4567889996554777877665 47899999999887775 322221 14679999999998744 478999998
Q ss_pred cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
... .+.+..+..|.-.+..+.+.|||+.|+.+.. -|.- ...+++.
T Consensus 85 ~~~---~~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~T-hpd~GR~----------------------------- 129 (305)
T PF07433_consen 85 ARG---YRRIGEFPSHGIGPHELLLMPDGETLVVANG--GIET-HPDSGRA----------------------------- 129 (305)
T ss_pred cCC---cEEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCcc-CcccCce-----------------------------
Confidence 722 2667777888888999999999988887642 1210 0000000
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 235 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~ 235 (685)
.+=..+.+..+...|..+|.
T Consensus 130 ------------------------------------------------------------kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 130 ------------------------------------------------------------KLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred ------------------------------------------------------------ecChhhcCCceEEEecCCCc
Confidence 01111122334455556666
Q ss_pred cccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe-------EEEEECCCCceEEEee--------cCCceeEEE
Q 005656 236 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD-------IKVWDFKGRDLKSRWE--------VGCSLVKIV 300 (685)
Q Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~--------~~~~i~~~~ 300 (685)
...+..- ...-|..+|+.++++++|..++..-..|. |-+++-. .....+. ....+-+++
T Consensus 150 ll~q~~L----p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 150 LLEQVEL----PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred eeeeeec----CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEE
Confidence 5544210 11257789999999999987666544432 3344332 2222222 236789999
Q ss_pred EeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656 301 YHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL 359 (685)
Q Consensus 301 ~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I 359 (685)
+++++.++++.+ ..+.+.+||..+++.+....- ..+..++-.+++ +++|.+. |.+
T Consensus 224 ~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 224 ADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred EeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCC-ccE
Confidence 999999776665 467999999999998876642 346777777776 6665553 443
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=3.3e-08 Score=93.39 Aligned_cols=149 Identities=19% Similarity=0.251 Sum_probs=119.2
Q ss_pred EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-----ceEEEeecCC
Q 005656 220 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGC 294 (685)
Q Consensus 220 g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~ 294 (685)
.+.+-.|-+-|+.+|.... | ...+.|.++.|...+..++.|...|.|..+|++.+ .+...+-+++
T Consensus 230 ~G~sqqv~L~nvetg~~qs-f---------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~S 299 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQQS-F---------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDS 299 (425)
T ss_pred ccccceeEEEEeecccccc-c---------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCc
Confidence 3344557788888764432 1 45677888999888899999999999999999854 5667778889
Q ss_pred ceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCee---EEEEecCCCCeEEEE--EcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656 295 SLVKIVYHR-VNGLLATVADDLVIRLFDVVALRM---VRKFEGHTDRITDFC--FSEDGKWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 295 ~i~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~--~spdg~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
.++++..-. ++.+|.+.+.+|+|++||++--++ +.++.||.+.-.-+- ..+....+++++.|...|||.+.+|.
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 999988776 778999999999999999987666 999999976544333 34556788999999999999999999
Q ss_pred eeeEEeeccc
Q 005656 369 QIDAIHVDVS 378 (685)
Q Consensus 369 ~i~~~~~~~~ 378 (685)
++.++..+..
T Consensus 380 Ll~tipf~~s 389 (425)
T KOG2695|consen 380 LLCTIPFPYS 389 (425)
T ss_pred eeeccCCCCc
Confidence 9999887654
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.8e-07 Score=87.51 Aligned_cols=245 Identities=11% Similarity=0.051 Sum_probs=151.8
Q ss_pred eEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
...+.+|...|..++|+|..+ ++..++.+..|++.|+++...+..+.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-------------------------------- 233 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-------------------------------- 233 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee--------------------------------
Confidence 345678889999999999765 78889999999999998876554442
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
....+++++|.-+ .+++++|..+|.|.+||++...-......
T Consensus 234 -------------------------------------a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~ 276 (463)
T KOG1645|consen 234 -------------------------------------AYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELV 276 (463)
T ss_pred -------------------------------------ccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhh
Confidence 2367888898775 47788999999999999987543222110
Q ss_pred ccccccCCCCcCEEEEE------EcCCCCEEEEEECCCeEEEEECC----CCceEEEeecCCceeEEEEeecCCEEEEEe
Q 005656 243 MSERSNYAHNGEVVGVA------CDSTNTLMISAGYHGDIKVWDFK----GRDLKSRWEVGCSLVKIVYHRVNGLLATVA 312 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~------~~~~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 312 (685)
.. ....+|..++ ..+.+.+++..+.+ +..|.+. ...++..+..++...++.+++..+.++...
T Consensus 277 a~-----~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ty 349 (463)
T KOG1645|consen 277 AN-----VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTY 349 (463)
T ss_pred hh-----hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEe
Confidence 00 1112333332 33344455544432 4566654 223334445557777888887666444433
Q ss_pred CC-C---eEE---E-EEcCCCeeEEEE-ecCCC-C------eEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCceeeEEee
Q 005656 313 DD-L---VIR---L-FDVVALRMVRKF-EGHTD-R------ITDFCFSEDGKWLL-SSGMDGSLRIWDVILARQIDAIHV 375 (685)
Q Consensus 313 ~d-g---~I~---i-~d~~~~~~~~~~-~~h~~-~------I~~l~~spdg~~l~-s~s~Dg~I~iwd~~~~~~i~~~~~ 375 (685)
.. . +++ . -|-.+|.++..- .+|.+ + -..+.-.++.++++ +++..+.+.+||..+++.++.+..
T Consensus 350 Rs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~ 429 (463)
T KOG1645|consen 350 RSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL 429 (463)
T ss_pred cCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeeccc
Confidence 22 1 111 1 122334333222 12211 1 11222345666666 455667899999999999999999
Q ss_pred ccceEEEEEcCC--CCeEEEEEeCCCeEEEEEcC
Q 005656 376 DVSITALSLSPN--MDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 376 ~~~v~~v~~spd--g~~Lat~~~d~~~I~lW~~~ 407 (685)
..+|..++.... +.||++-..| .++|+.+.
T Consensus 430 ~epv~Dicp~~~n~~syLa~LTd~--~v~Iyk~e 461 (463)
T KOG1645|consen 430 SEPVLDICPNDTNGSSYLALLTDD--RVHIYKNE 461 (463)
T ss_pred CcceeecceeecCCcchhhheecc--eEEEEecC
Confidence 999988876543 5688887755 68887653
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.72 E-value=2.9e-05 Score=83.59 Aligned_cols=320 Identities=12% Similarity=0.091 Sum_probs=175.4
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccc-----cCee--EEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHD-----NAII--SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 89 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~-----~~V~--~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~ 89 (685)
.++.++.+|.|.-.|..+++.+-....... ..+. .+... ++..++.++.++.|.-+|.++++ .+-...
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~----~~W~~~ 137 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGK----QVWKFG 137 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCC----Eeeeec
Confidence 456677789999999999988777652221 0110 11111 22577778889999999888773 332221
Q ss_pred cCCCC-----C-eEEEEecCCCEEEEEe---------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 90 GHSAP-----P-LCIRFYANGRHILSAG---------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 90 ~h~~~-----v-~~i~~~~~~~~l~s~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
..... + ....+. +..++.++ .+|.+..+|..+++..-........ ..
T Consensus 138 ~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~-----------~~----- 199 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD-----------PN----- 199 (488)
T ss_pred CCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC-----------cC-----
Confidence 11110 1 111122 23455443 3577888888888765544211000 00
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC----------
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG---------- 224 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---------- 224 (685)
. .+.|... ...|. ......-.+.++.+.+..+++++.++
T Consensus 200 -~-------~~~~~~~---------~~~~~--------------~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~ 248 (488)
T cd00216 200 -A-------FPTWGPD---------RQMWG--------------PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRT 248 (488)
T ss_pred -C-------CCCCCCC---------cceec--------------CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccC
Confidence 0 0000000 00000 00000112345666677888887665
Q ss_pred --------cEEEEECCCCcccccccccccccc--CCCCcCE-EEEEEcCCCC---EEEEEECCCeEEEEECCCCceEEEe
Q 005656 225 --------WIERFNLQSGISRGSYLDMSERSN--YAHNGEV-VGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSRW 290 (685)
Q Consensus 225 --------~i~~~d~~~~~~~~~~~~~~~~~~--~~h~~~v-~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (685)
.|.-+|..+|+....+........ .....++ ..+. .-++. .++.++.+|.+...|..+|+.+...
T Consensus 249 ~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 249 PGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 799999999998877642110000 0111111 1111 11232 5777888999999999999998876
Q ss_pred ecCCceeEEEEeecCCEEEEE------------------eCCCeEEEEEcCCCeeEEEEecCC--------CCe--EEEE
Q 005656 291 EVGCSLVKIVYHRVNGLLATV------------------ADDLVIRLFDVVALRMVRKFEGHT--------DRI--TDFC 342 (685)
Q Consensus 291 ~~~~~i~~~~~~~~~~~l~~~------------------~~dg~I~i~d~~~~~~~~~~~~h~--------~~I--~~l~ 342 (685)
... ...+..+| ..++++ ..+|.+.-+|+.+|+.+-+..... .+. ..+.
T Consensus 328 ~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~ 403 (488)
T cd00216 328 PEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA 403 (488)
T ss_pred Eee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE
Confidence 542 11223333 333332 236789999999998877665321 111 1122
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceE--EEEEcCCCCeEEEEEeCC
Q 005656 343 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSIT--ALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 343 ~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~--~v~~spdg~~Lat~~~d~ 398 (685)
. .+..|+.++.||.|+.+|..+|+.+-.++....+. -+.+..+|+ ++++..++
T Consensus 404 ~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~-~yv~~~~g 458 (488)
T cd00216 404 T--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK-QYVGVMVG 458 (488)
T ss_pred e--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE-EEEEEEec
Confidence 2 56788899999999999999999998888766632 233344543 33333344
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.69 E-value=6.5e-08 Score=63.67 Aligned_cols=39 Identities=41% Similarity=0.868 Sum_probs=37.2
Q ss_pred CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 325 ~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
+++++++.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 316
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.67 E-value=2.1e-07 Score=84.77 Aligned_cols=190 Identities=17% Similarity=0.218 Sum_probs=116.5
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-----CCCeEEEEEC
Q 005656 207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-----YHGDIKVWDF 281 (685)
Q Consensus 207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-----~dg~i~iwd~ 281 (685)
+-+.+-.++.+++++.||.+.+++.+.-...... ....|.+ -.+.++...++.+.+++ .-+..+.|++
T Consensus 94 ~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~------i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~ 166 (319)
T KOG4714|consen 94 NDACTMTDNRVCIGYADGSLAVFSTDKDLALMSR------IPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTL 166 (319)
T ss_pred cccccccCCceEecCCCceEEEEechHHHhhhhh------ccccccc-ccccceeecccEEecCCcceEeeccceeeecc
Confidence 3344455788999999999999988762111110 0001211 11222223344444332 1234566666
Q ss_pred CCCceE-EEeecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCee-EEEEecCCCCeEEEEEcC-CCCEEEEEeCCC
Q 005656 282 KGRDLK-SRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSE-DGKWLLSSGMDG 357 (685)
Q Consensus 282 ~~~~~~-~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg 357 (685)
+..+.. ........+++++-+|..+ ++++|+.||.+.+||.+.... +..+..|..+|+.+-|+| ++..|+++++||
T Consensus 167 ~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 167 DPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred cccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence 533221 1111224488889888655 788889999999999998743 445678999999999999 667999999999
Q ss_pred cEEEEEcCCCceee------------------E-Eee----ccceEEE-EEcCCCCeEEEEEeCCCeEEEEE
Q 005656 358 SLRIWDVILARQID------------------A-IHV----DVSITAL-SLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 358 ~I~iwd~~~~~~i~------------------~-~~~----~~~v~~v-~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
.+--||..+ ..+. . +.. +....++ .|.--|..|++|+.-+ .||+..
T Consensus 247 slw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~e-aIyl~~ 316 (319)
T KOG4714|consen 247 SLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAE-AIYLTR 316 (319)
T ss_pred cEEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccc-eEEEec
Confidence 999999763 1111 0 110 1111111 2444678898888666 888875
No 317
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=9.3e-08 Score=90.46 Aligned_cols=129 Identities=15% Similarity=0.222 Sum_probs=99.4
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEE
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWD 280 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd 280 (685)
.+.|.+..|...++.+..|+.+|.|..+|++.+..-.... ....-|...|+++..-. ++++|++.+.+|+|++||
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~----a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD 327 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC----AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD 327 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc----eEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence 4567778888889999999999999999998762111000 01117899999998876 778999999999999999
Q ss_pred CCCCce---EEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC
Q 005656 281 FKGRDL---KSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 334 (685)
Q Consensus 281 ~~~~~~---~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h 334 (685)
.+.-+. +.++..| ....-+-..+....++++++|...+||.++.+..+.++.-.
T Consensus 328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 328 LRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 986655 6676665 22333455667788999999999999999999999887643
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.63 E-value=1.9e-05 Score=76.22 Aligned_cols=197 Identities=13% Similarity=0.172 Sum_probs=142.1
Q ss_pred CCCeEEEEEcc-CCCEEEEEecCC-cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-----CC
Q 005656 202 PTAVKACTISA-CGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HG 274 (685)
Q Consensus 202 ~~~v~~~~~s~-~g~~l~~g~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----dg 274 (685)
+.....++.+| .+..++++-.-| ...+||.+++.....+.....+-+++| -+|+++|++|++.-. .|
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRG 77 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcE
Confidence 34456778888 556667776666 578899999998877765444444455 478999999998743 47
Q ss_pred eEEEEECC-CCceEEEeecC-CceeEEEEeecCCEEEEEeC------------------CCeEEEEEcCCCeeEEEEe--
Q 005656 275 DIKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD------------------DLVIRLFDVVALRMVRKFE-- 332 (685)
Q Consensus 275 ~i~iwd~~-~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~------------------dg~I~i~d~~~~~~~~~~~-- 332 (685)
.|-|||.. +.+.+..+..+ -....+.+.|||+.|+++.. +.++...|..+|+.+.+..
T Consensus 78 ~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp 157 (305)
T PF07433_consen 78 VIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP 157 (305)
T ss_pred EEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence 89999999 55666666654 45667889999987777632 2356777888998887743
Q ss_pred --cCCCCeEEEEEcCCCCEEEEEeCCCc-------EEEEEcCCCceeeEEe--------eccceEEEEEcCCCCeEEEEE
Q 005656 333 --GHTDRITDFCFSEDGKWLLSSGMDGS-------LRIWDVILARQIDAIH--------VDVSITALSLSPNMDVLATAH 395 (685)
Q Consensus 333 --~h~~~I~~l~~spdg~~l~s~s~Dg~-------I~iwd~~~~~~i~~~~--------~~~~v~~v~~spdg~~Lat~~ 395 (685)
-|...|..+++.++|..++..-..|. |-+++- +..+..+. ....+-+|+++++|.++++++
T Consensus 158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence 37788999999999987666544332 344432 33333333 234589999999999999999
Q ss_pred eCCCeEEEEEc
Q 005656 396 VDQNGVYLWVN 406 (685)
Q Consensus 396 ~d~~~I~lW~~ 406 (685)
--++.+.+|+.
T Consensus 236 PrGg~~~~~d~ 246 (305)
T PF07433_consen 236 PRGGRVAVWDA 246 (305)
T ss_pred CCCCEEEEEEC
Confidence 99999999964
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.61 E-value=4.9e-07 Score=96.07 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=114.6
Q ss_pred ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---------CCeEEEEEC
Q 005656 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---------HGDIKVWDF 281 (685)
Q Consensus 211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---------dg~i~iwd~ 281 (685)
-.+++++.+|...|.|.+-|..+.+...++. +|++.|..+.+ .|+.|++||. |..|++||+
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~--------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFD--------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCceeeeee--------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence 3467899999999999999999999999886 99999988776 5778999875 455899999
Q ss_pred CCCceEEEeecCCceeEEEEeecC-CEEEEEeCCCeEEEEEcC---CC-eeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656 282 KGRDLKSRWEVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVV---AL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356 (685)
Q Consensus 282 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~I~i~d~~---~~-~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D 356 (685)
+..+.+.-+..+....-+.|+|.- ..+++++..|...+.|.. +. .-+..+......+..+++|++|+.++.|..+
T Consensus 254 Rmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred hhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence 988777666666555677888864 488889999999999943 32 1122233334559999999999999999999
Q ss_pred CcEEEEE
Q 005656 357 GSLRIWD 363 (685)
Q Consensus 357 g~I~iwd 363 (685)
|.|.+|.
T Consensus 334 g~v~~wa 340 (1118)
T KOG1275|consen 334 GHVNLWA 340 (1118)
T ss_pred CcEeeec
Confidence 9999997
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.61 E-value=6.7e-05 Score=83.08 Aligned_cols=278 Identities=13% Similarity=0.162 Sum_probs=155.2
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
+.|.++.|..++. -++.+...|.|.+-|.++....-. +.-..+|.+++|+||+.+++..+.++++.+-..+-
T Consensus 69 ~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f----- 140 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN-SICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPDEELLALITGRQTLLFMTKDF----- 140 (1265)
T ss_pred cceEEEEEecccc-eEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc-----
Confidence 4688999999887 566777889999998877654322 23568899999999999999888888877653221
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
.++.... . ...-.+.+ ..+.+|..+.=.-+.-..++....-. ...
T Consensus 141 ~~i~E~~-----L-~~d~~~~s-k~v~VGwGrkeTqfrgs~gr~~~~~~--------------~~~-------------- 185 (1265)
T KOG1920|consen 141 EPIAEKP-----L-DADDERKS-KFVNVGWGRKETQFRGSEGRQAARQK--------------IEK-------------- 185 (1265)
T ss_pred cchhccc-----c-cccccccc-ccceecccccceeeecchhhhccccc--------------ccc--------------
Confidence 1111100 0 11111122 23333332211111111110000000 000
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-----ecCCcEEEEECCCCccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-----TAGGWIERFNLQSGISR 237 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----~~dg~i~~~d~~~~~~~ 237 (685)
.... ......+.=+.++|-.||.++++. .....|++||-. |..-
T Consensus 186 -----------------------------ek~~-~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln 234 (1265)
T KOG1920|consen 186 -----------------------------EKAL-EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN 234 (1265)
T ss_pred -----------------------------cccc-cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh
Confidence 0000 000112334578999999999883 333789999977 4332
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEE---CCCeEEEEECCC---CceEEEeecC-CceeEEEEeecCCEEEE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKG---RDLKSRWEVG-CSLVKIVYHRVNGLLAT 310 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s---~dg~i~iwd~~~---~~~~~~~~~~-~~i~~~~~~~~~~~l~~ 310 (685)
..-. ...+.-.+++|-|.|..+++.. .|+.|.++.-+. +.....+... ..+..++|+.++..||+
T Consensus 235 s~se--------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 235 STSE--------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred cccC--------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 2111 2334446899999999888764 566788887543 2222222223 34899999999999998
Q ss_pred ---EeCCCeEEEEEcCCCeeE--EEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEc
Q 005656 311 ---VADDLVIRLFDVVALRMV--RKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 311 ---~~~dg~I~i~d~~~~~~~--~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~ 364 (685)
......|++|-+.+..-. +.+.-..... +.|+|-- ..|..-..+|...++++
T Consensus 307 ~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 307 VTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 555567999998775322 1222111111 6777732 22333335565555543
No 321
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.61 E-value=2e-05 Score=81.12 Aligned_cols=283 Identities=13% Similarity=0.107 Sum_probs=141.9
Q ss_pred CCeEEEEecCCCEEEEEeCCCceEEEEeecCceee-EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656 94 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 172 (685)
Q Consensus 94 ~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (685)
.|+.+.|.++..-|+.+...|.|-+|.....+... .............+........+..+..-.....++.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~g------- 75 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEG------- 75 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEE-------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccc-------
Confidence 47899999998899999999999999987765432 1111111000011111111111100100000000000
Q ss_pred EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCC
Q 005656 173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 252 (685)
Q Consensus 173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~ 252 (685)
+....+. ....++|++++.| +=.|+++|+.+|.+.+.|++....+..-.-..........
T Consensus 76 -----------------f~P~~l~--~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~ 135 (395)
T PF08596_consen 76 -----------------FLPLTLL--DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS 135 (395)
T ss_dssp -----------------EEEEEEE-----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS--
T ss_pred -----------------cCchhhe--eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccc
Confidence 0000011 1337889999997 6679999999999999999776655442111101111344
Q ss_pred cCEEEEEEcC-----CC---CEEEEEECCCeEEEEECCC---CceE----EEe-ecCCceeEEE-Eeec-----------
Q 005656 253 GEVVGVACDS-----TN---TLMISAGYHGDIKVWDFKG---RDLK----SRW-EVGCSLVKIV-YHRV----------- 304 (685)
Q Consensus 253 ~~v~~l~~~~-----~~---~~l~s~s~dg~i~iwd~~~---~~~~----~~~-~~~~~i~~~~-~~~~----------- 304 (685)
..|+++.|.- |+ -.+++|...|.+.+|.+.- +... ... ...+++..+. ++.+
T Consensus 136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~ 215 (395)
T PF08596_consen 136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISA 215 (395)
T ss_dssp --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHH
T ss_pred cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhH
Confidence 5678887752 33 3678888999999998751 2111 111 2334554444 2221
Q ss_pred ------C---CEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEc-----CCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 305 ------N---GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS-----EDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 305 ------~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s-----pdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
+ .-+++...+..++++...+.+...+.....-....+++- ..+..|++-..+|.|++|.++.-+.+
T Consensus 216 ~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 216 MQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp HHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred hhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 1 234455557889999998887766555222233344452 35667888889999999999999988
Q ss_pred eEEeeccc-----eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 371 DAIHVDVS-----ITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 371 ~~~~~~~~-----v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
..+..... +...+++++|+.++-.+.. .+.+++
T Consensus 296 ~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps--E~~l~s 333 (395)
T PF08596_consen 296 KSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS--EIQLFS 333 (395)
T ss_dssp EEEE-SS---HHHHTT-EE-TTS-EEEE-SSS--EEEEEE
T ss_pred hcccCCCccccccccccEECCCCCEEEEeCcc--cEEEEE
Confidence 88776432 5677889999988877654 455543
No 322
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=0.00043 Score=63.74 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=78.5
Q ss_pred EccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc
Q 005656 10 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 89 (685)
Q Consensus 10 fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~ 89 (685)
.-+|.+.+++.|+..+.+.--|..+|+.+.... -...|.+-+.- -|++++.|...|.+.+-++.++..-+...
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~---- 90 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV---- 90 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee----
Confidence 345556688899999999999999998876543 23334443333 46789999999999999988874322211
Q ss_pred cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEe
Q 005656 90 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL 130 (685)
Q Consensus 90 ~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 130 (685)
....-=......+++..+..++.|++....|..+..++...
T Consensus 91 ~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 91 ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 11111122344568889999999999999999877765543
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=7.9e-08 Score=101.30 Aligned_cols=218 Identities=13% Similarity=0.196 Sum_probs=149.9
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCC--cEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN--SIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~--~v~iWd~~~~ 78 (685)
|+..-||++|+-+.+ .|++|+..|.|++|++.+|....... +|..+|+.+.=+.||..+++.+.-. -..+|+....
T Consensus 1100 ~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred cccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence 456789999999887 89999999999999999999998887 9999999999999999777765533 4678987653
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
. ...+++ ..-.++.|+.....-+.|+......+||+.++....++-....
T Consensus 1178 ~---~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----------------------- 1227 (1516)
T KOG1832|consen 1178 G---GPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV----------------------- 1227 (1516)
T ss_pred c---Cccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch-----------------------
Confidence 2 222222 2345778876544444455455688999988765544311100
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
.....-.+..|+|+...++- || .+||.+....++
T Consensus 1228 -----------------------------------------~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh 1261 (1516)
T KOG1832|consen 1228 -----------------------------------------TSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIH 1261 (1516)
T ss_pred -----------------------------------------hhhhhccccccCCCcceEee---Cc--eeeeeccHHHHh
Confidence 11122256789999887763 44 479999887777
Q ss_pred ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 311 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 311 (685)
.|.. .+. --+-.|+|.|..++.-+ .|||+++.++++....- .-..+.|+..|..++..
T Consensus 1262 ~FD~--------ft~-~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L-dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1262 RFDQ--------FTD-YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL-DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred hhhh--------hee-cccccccCCCceEEeec-----hhhhhHHHHHHhcCccc-cceEEEeccCccchhhh
Confidence 7642 111 12335899998888766 48999998877655432 23456777777755543
No 324
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.55 E-value=2.9e-07 Score=95.36 Aligned_cols=121 Identities=17% Similarity=0.274 Sum_probs=97.8
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCee-eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 79 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~ 79 (685)
|+..|+.+.|.|....++|+++.|-.+..||+.+... +.... .-...-..++|+...+.+.+.+..+.|++||...+.
T Consensus 113 hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs 191 (1081)
T KOG0309|consen 113 HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS 191 (1081)
T ss_pred CccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence 6788999999999888999999999999999988543 44444 444566889999876666666778899999988765
Q ss_pred CCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCc
Q 005656 80 GDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQ 125 (685)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~ 125 (685)
.++..+++|...|..+.|..- ...+.+++.||+|+.||.....
T Consensus 192 ---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 192 ---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred ---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 667778889999999999763 4468899999999999986543
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=2.8e-07 Score=60.59 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=36.2
Q ss_pred CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656 35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 74 (685)
Q Consensus 35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd 74 (685)
++++.++. +|.+.|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35778888 9999999999999999999999999999996
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.7e-05 Score=84.47 Aligned_cols=222 Identities=14% Similarity=0.199 Sum_probs=138.9
Q ss_pred EEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCC-CeEEEEecCCCEEEEEeCCCc-----eEEEEeecCce
Q 005656 53 HFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYANGRHILSAGQDRA-----FRLFSVIQDQQ 126 (685)
Q Consensus 53 ~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~ 126 (685)
+|++++..++.|+.+|.|.+.+ .. .+.++.+..+... |..+....+..+|++.+.|+. +++|+++.-+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln--~s---~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN--SS---FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEec--cc---ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 3567888999999999887774 32 1444666677766 444444434468888887754 88998864321
Q ss_pred eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeE
Q 005656 127 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK 206 (685)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~ 206 (685)
... |. .+ +..+++.. ..+..+.++.
T Consensus 105 n~s-----------------------P~---------------c~------~~~ri~~~-----------~np~~~~p~s 129 (933)
T KOG2114|consen 105 NNS-----------------------PQ---------------CL------YEHRIFTI-----------KNPTNPSPAS 129 (933)
T ss_pred CCC-----------------------cc---------------ee------eeeeeecc-----------CCCCCCCcce
Confidence 100 00 00 00001000 1113577899
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 005656 207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL 286 (685)
Q Consensus 207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (685)
+++++.+-+.+|+|..+|.|..+.-.--..+..-.. .......+|+++++..+++.++.+..-..|.+|.+.+..+
T Consensus 130 ~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~----~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p 205 (933)
T KOG2114|consen 130 SLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD----YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP 205 (933)
T ss_pred EEEEEccccEEEEEecCcEEEEEcCcchhcccccee----eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc
Confidence 999999999999999999999985322111111100 1114457999999998887633334456899999985553
Q ss_pred E-EEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCCCeE
Q 005656 287 K-SRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRIT 339 (685)
Q Consensus 287 ~-~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~ 339 (685)
. ..+. ++.+..|..+++....+++++ +..+.+||....++-..|. ||.....
T Consensus 206 ~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 206 SLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred ceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 3 3243 347788888887666455554 3579999998777766776 6665443
No 327
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.5e-06 Score=81.73 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=72.3
Q ss_pred EEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC-
Q 005656 27 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG- 104 (685)
Q Consensus 27 I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~- 104 (685)
+++.+-.+.+....+. +|...|..++|+|..+ ++..++.++.|+|.|+.+. ..+.....| .++++++|.-|.
T Consensus 175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~----~~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS----CVVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccc----eeeeheecc-CCceeeeeccCCc
Confidence 5555554544444444 7889999999999877 7888999999999999887 555555566 889999998875
Q ss_pred CEEEEEeCCCceEEEEeecCc
Q 005656 105 RHILSAGQDRAFRLFSVIQDQ 125 (685)
Q Consensus 105 ~~l~s~s~dg~i~vwd~~~~~ 125 (685)
++|..|-..|.|.+||++..+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ceeEEeccCceEEEEEccCCC
Confidence 466667778999999997654
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2.6e-05 Score=83.05 Aligned_cols=207 Identities=14% Similarity=0.174 Sum_probs=136.5
Q ss_pred EccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccC-eeEEEEeCCCcEEEEecCCC-----cEEEEEecCCCCC--
Q 005656 10 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA-IISLHFFANEPVLMSASADN-----SIKMWIFDTTDGD-- 81 (685)
Q Consensus 10 fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~-- 81 (685)
|++.+. .+|.|+.+|.|.+.+- +-+.++.++ ++... |..+....+..+|++.+.|. .++||+++..++.
T Consensus 31 ~~s~~~-~vvigt~~G~V~~Ln~-s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTG-SVVIGTADGRVVILNS-SFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCc-eEEEeeccccEEEecc-cceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 567666 8999999998888763 334446666 66666 55555555557888887765 4899999876322
Q ss_pred Ccee---Eec----ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 82 PRLL---RFR----SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 82 ~~~~---~~~----~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
+.++ +.. .....|+.+++.+.+-+.++.|-.+|.|..+.- ...+....
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G---Di~RDrgs---------------------- 162 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG---DILRDRGS---------------------- 162 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC---cchhcccc----------------------
Confidence 4444 221 113567889999999889999999998887632 11111000
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 234 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~ 234 (685)
...-......+|+.+++..++..++.......|.+|.+...
T Consensus 163 ---------------------------------------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 163 ---------------------------------------RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred ---------------------------------------ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 00000144678999999999988555555667999999844
Q ss_pred ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee
Q 005656 235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE 291 (685)
Q Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (685)
.+.... ...|...+.|.++++....+++++ +..+.+|+....++-..+.
T Consensus 204 ~p~~~~-------ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 204 TPSLKV-------LDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred Ccceee-------eccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 422221 226778899999987665465554 4679999988766655555
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.52 E-value=0.00012 Score=67.19 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=48.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCee-EEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656 14 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII-SLHFFANEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 14 g~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|. +++.|++.|.+++.+.++|.....+. . .+.|. .....+++.++..++.|++...-|..+.
T Consensus 63 gd-fVV~GCy~g~lYfl~~~tGs~~w~f~-~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 63 GD-FVVLGCYSGGLYFLCVKTGSQIWNFV-I-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred CC-EEEEEEccCcEEEEEecchhheeeee-e-hhhhccceEEcCCCceEEEecCCCcEEEeccccc
Confidence 45 78899999999999999998777665 2 22232 2345678889999999999998887765
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=3e-05 Score=81.90 Aligned_cols=195 Identities=11% Similarity=0.100 Sum_probs=132.6
Q ss_pred cCCCEEEEEec-CCcEEEEECCCCccccccccccc------c-ccCCCCcCEEE-----EEEcCCCCEEEEE-ECCCeEE
Q 005656 212 ACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSE------R-SNYAHNGEVVG-----VACDSTNTLMISA-GYHGDIK 277 (685)
Q Consensus 212 ~~g~~l~~g~~-dg~i~~~d~~~~~~~~~~~~~~~------~-~~~~h~~~v~~-----l~~~~~~~~l~s~-s~dg~i~ 277 (685)
.||+++++-.. +++|...++...+......-+.. + ....+++.|.+ +-++|+|+.+... -..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 47888888774 66777777765444322211000 0 00133333433 3346677655333 3557788
Q ss_pred EEECCCCceEEEeecCCceeEEEEeecCCEEEEEe----------------------------------------CCCeE
Q 005656 278 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA----------------------------------------DDLVI 317 (685)
Q Consensus 278 iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------------------------------------~dg~I 317 (685)
+.|..+.+...++..+.....+.++|+|+++++.+ .++.|
T Consensus 219 vID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 219 AVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 89999888888888877778889999999887775 12457
Q ss_pred EEEEcCC-----CeeEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCc------------eeeEEeeccce
Q 005656 318 RLFDVVA-----LRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILAR------------QIDAIHVDVSI 379 (685)
Q Consensus 318 ~i~d~~~-----~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~------------~i~~~~~~~~v 379 (685)
.++|..+ .+.+..+. -......+.+||||+++++++ .+.+|.|.|+.+.+ .+..+......
T Consensus 299 ~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP 377 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP 377 (635)
T ss_pred EEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc
Confidence 7777776 34444444 334567899999999988666 68999999998855 35555555667
Q ss_pred EEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 380 TALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 380 ~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
...+|+++|....+-..|. .|-.|+...
T Consensus 378 LHTaFDg~G~aytslf~ds-qv~kwn~~~ 405 (635)
T PRK02888 378 LHTAFDGRGNAYTTLFLDS-QIVKWNIEA 405 (635)
T ss_pred ceEEECCCCCEEEeEeecc-eeEEEehHH
Confidence 7889999999888888886 999999765
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=9.8e-06 Score=85.56 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=127.4
Q ss_pred ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656 46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~ 125 (685)
...++|++++ ++.++-|+.+|.|++.+.+.. . .....|+.. .-+|.+++||+.||.|.|..+.+++
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc
Confidence 4567777776 679999999999999977643 1 222344443 4579999999999999999887776
Q ss_pred eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656 126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 205 (685)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 205 (685)
....+ ....++
T Consensus 105 ~~~~~---------------------------------------------------------------------df~rpi 115 (846)
T KOG2066|consen 105 EITQY---------------------------------------------------------------------DFKRPI 115 (846)
T ss_pred cceeE---------------------------------------------------------------------ecCCcc
Confidence 55444 335678
Q ss_pred EEEEEccC-----CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656 206 KACTISAC-----GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 280 (685)
Q Consensus 206 ~~~~~s~~-----g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 280 (685)
.+++++|+ .+.+++|+..| +.++.-.=-...... ......|+|.++.|. |.+++-++.+| |++||
T Consensus 116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD 185 (846)
T ss_pred eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------eeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence 89999997 57889999988 777642211111000 122567899999996 66788877555 89999
Q ss_pred CCCCceEEEeecCC-------ceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 005656 281 FKGRDLKSRWEVGC-------SLVKIVYHRVNGLLATVADDLVIRLFDVV 323 (685)
Q Consensus 281 ~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~ 323 (685)
+.+++.+..+..+. -...+.|.++ ..|+.|-. .+|+|..++
T Consensus 186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWG-DSVKICSIK 233 (846)
T ss_pred ccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecC-CeEEEEEEe
Confidence 99988887766542 2335666654 45555554 478888877
No 332
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.41 E-value=0.00093 Score=72.26 Aligned_cols=319 Identities=11% Similarity=0.107 Sum_probs=166.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeE----------EEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS----------LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR 86 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~----------l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 86 (685)
.|++++.++.|.-.|..+|+.+-.....-...+.. +++. +..++.++.|+.+.-.|..++. .+-
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk----~~W 144 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGK----VVW 144 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCC----EEe
Confidence 56667778899999999999887765211111111 1222 3456677788888888777663 332
Q ss_pred ecc--cCC--CCCeEEEEecCCCEEEEEe------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656 87 FRS--GHS--APPLCIRFYANGRHILSAG------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 156 (685)
Q Consensus 87 ~~~--~h~--~~v~~i~~~~~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
... .+. ..+++--..-++ .++.+. .+|.|..+|..+++..-.+........... ....++
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~-------~~~~~~-- 214 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLD-------KADKPV-- 214 (527)
T ss_pred ecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccc-------cccccc--
Confidence 211 111 111111011134 455543 268999999999987766542210000000 000000
Q ss_pred eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-------------
Q 005656 157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG------------- 223 (685)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------------- 223 (685)
........|..-.... +....=..+++.+..+.+++++.+
T Consensus 215 --~~~~~~~tw~~~~~~~-------------------------gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdn 267 (527)
T TIGR03075 215 --GGEPGAKTWPGDAWKT-------------------------GGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDN 267 (527)
T ss_pred --ccccccCCCCCCcccc-------------------------CCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCC
Confidence 0000000110000000 001111233455555555555422
Q ss_pred ---CcEEEEECCCCccccccccccccccC-CCCcCEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceEEE-------
Q 005656 224 ---GWIERFNLQSGISRGSYLDMSERSNY-AHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSR------- 289 (685)
Q Consensus 224 ---g~i~~~d~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~------- 289 (685)
..|.-.|+++|+..-.|......... .-.....-+.+..+|+ .++.+..+|.+++.|-.+++++..
T Consensus 268 l~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~ 347 (527)
T TIGR03075 268 LYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTV 347 (527)
T ss_pred ccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCc
Confidence 15777888888887776432111000 0001112223334665 677889999999999999987621
Q ss_pred -e----ecC--Cce----------------------------eEEEEeecCCEEEEEeCC--------------------
Q 005656 290 -W----EVG--CSL----------------------------VKIVYHRVNGLLATVADD-------------------- 314 (685)
Q Consensus 290 -~----~~~--~~i----------------------------~~~~~~~~~~~l~~~~~d-------------------- 314 (685)
+ ... .++ ..++++|+..++++...+
T Consensus 348 ~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~ 427 (527)
T TIGR03075 348 NWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLG 427 (527)
T ss_pred ccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceec
Confidence 1 000 000 125666666655544333
Q ss_pred -------------CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccce
Q 005656 315 -------------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSI 379 (685)
Q Consensus 315 -------------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v 379 (685)
|.+.-+|+.+++.+-+........... ..-.+..++.++.||.++.+|..+|+.+-.++....+
T Consensus 428 ~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~ 504 (527)
T TIGR03075 428 AGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGI 504 (527)
T ss_pred cccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCc
Confidence 457788888888777665322111121 1224557777888999999999999999988876653
No 333
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.40 E-value=2.5e-05 Score=86.30 Aligned_cols=192 Identities=13% Similarity=0.083 Sum_probs=132.7
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
...|.++.|..+++.+++++..|.|.+.|..+......- .-...|.+++|+|+++.++..+..+++.+-+-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---------~vd~GI~aaswS~Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---------NVDNGISAASWSPDEELLALITGRQTLLFMTK 138 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee---------eccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence 368999999999999999999999999988776543221 34578999999999999998888788766432
Q ss_pred C----C-------------------CceEEEeec----------------------CCceeEEEEeecCCEEEEE-----
Q 005656 282 K----G-------------------RDLKSRWEV----------------------GCSLVKIVYHRVNGLLATV----- 311 (685)
Q Consensus 282 ~----~-------------------~~~~~~~~~----------------------~~~i~~~~~~~~~~~l~~~----- 311 (685)
. . |+....+.+ +..-+.+.|--||.++|+.
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 1 1 111112221 1223458899999999984
Q ss_pred eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCceeeEE----eeccc-eEEEE
Q 005656 312 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG---MDGSLRIWDVILARQIDAI----HVDVS-ITALS 383 (685)
Q Consensus 312 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s---~Dg~I~iwd~~~~~~i~~~----~~~~~-v~~v~ 383 (685)
.....|+|||.+ |..-..-..-.+.=.+++|-|.|.++++-. .|+.|.+|.- +|-....+ ..+.. |..++
T Consensus 219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheee
Confidence 233799999987 433222222233345789999999998763 5668999984 34333333 22333 89999
Q ss_pred EcCCCCeEEE---EEeCCCeEEEEE
Q 005656 384 LSPNMDVLAT---AHVDQNGVYLWV 405 (685)
Q Consensus 384 ~spdg~~Lat---~~~d~~~I~lW~ 405 (685)
|+.++..||+ ..... .|++|.
T Consensus 297 Wns~sdiLAv~~~~~e~~-~v~lwt 320 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENS-LVQLWT 320 (1265)
T ss_pred ecCCCCceeeeecccccc-eEEEEE
Confidence 9999999998 33333 599995
No 334
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.39 E-value=0.00072 Score=67.62 Aligned_cols=297 Identities=17% Similarity=0.154 Sum_probs=125.4
Q ss_pred EEccCCCCEEEEEeCCCc--EEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656 9 AFSSDGQPLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR 86 (685)
Q Consensus 9 ~fspdg~~~latg~~dg~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 86 (685)
+|.+||+.+|.++..+|. +.+.|+++++..+... +-........++|+++.++-......|+--|+++. +.+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-g~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~--e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-GPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL--EERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT----EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-CCCCCccceEEecCCCeEEEEECCCeEEEEECCcC--cEEEEE
Confidence 578899867777766664 6666889998887766 33233446777888888766555556655555554 222332
Q ss_pred ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656 87 FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 166 (685)
Q Consensus 87 ~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (685)
.. ....+-...|..+ .|++..+---........+.. .. ....+.. ..+
T Consensus 119 ~~--p~~~~g~gt~v~n--------~d~t~~~g~e~~~~d~~~l~~--~~-~f~e~~~-----a~p-------------- 166 (386)
T PF14583_consen 119 EV--PDDWKGYGTWVAN--------SDCTKLVGIEISREDWKPLTK--WK-GFREFYE-----ARP-------------- 166 (386)
T ss_dssp E----TTEEEEEEEEE---------TTSSEEEEEEEEGGG-----S--HH-HHHHHHH-----C----------------
T ss_pred EC--CcccccccceeeC--------CCccEEEEEEEeehhccCccc--cH-HHHHHHh-----hCC--------------
Confidence 22 2333333444322 223222111111111111100 00 0000000 000
Q ss_pred CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-------cEEEEECCCCccccc
Q 005656 167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-------WIERFNLQSGISRGS 239 (685)
Q Consensus 167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-------~i~~~d~~~~~~~~~ 239 (685)
-..++......+...+- . .....+..+.++|....++.=+..| .|.+.+.........
T Consensus 167 ~~~i~~idl~tG~~~~v----------~-----~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v 231 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVV----------F-----EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV 231 (386)
T ss_dssp -EEEEEEETTT--EEEE----------E-----EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES
T ss_pred CceEEEEECCCCceeEE----------E-----ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee
Confidence 01111111111111110 0 2345677888888665555544333 344445443333222
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAG-----YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 314 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 314 (685)
... .....+..=-|.|+|..+..-+ .+..|.-+|..+++.......+ ....+-.+++|++++-=+.|
T Consensus 232 ~~~-------~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 232 HRR-------MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp S----------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred ecC-------CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 210 1123445556889998765533 2446777888887665444433 34566667888877653333
Q ss_pred ----------------CeEEEEEcCCCeeEEEEecCC----------C-CeEEEEEcCCCCEEEEE-eCCCcEEEEEc
Q 005656 315 ----------------LVIRLFDVVALRMVRKFEGHT----------D-RITDFCFSEDGKWLLSS-GMDGSLRIWDV 364 (685)
Q Consensus 315 ----------------g~I~i~d~~~~~~~~~~~~h~----------~-~I~~l~~spdg~~l~s~-s~Dg~I~iwd~ 364 (685)
..|+++++..++... +..|. . .=....|||||++++-. ...|...||-+
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp -----------------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 256778888776432 21121 1 12357899999988754 46777766643
No 335
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.001 Score=69.09 Aligned_cols=279 Identities=11% Similarity=0.109 Sum_probs=185.3
Q ss_pred EEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec-CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCC
Q 005656 27 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 105 (685)
Q Consensus 27 I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 105 (685)
+.+++..+......+. .+. ....+...+++..+.... ....+..-+.. .. ........-......+..++.+.
T Consensus 13 ~~v~~~~~~~~~~~~~-~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n--~~~~~~~~g~~~p~~i~v~~~~~ 86 (381)
T COG3391 13 VSVINTGTNKVTAAIS-LGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SN--TVTQSLSVGGVYPAGVAVNPAGN 86 (381)
T ss_pred eEEEeecccEEEEEee-cCC-CCceeEEcCccCEEEEEeecCceeeecccc--cc--eeeeeccCCCccccceeeCCCCC
Confidence 7788877777766665 333 567788888885443332 22233333222 11 11111111114556788888877
Q ss_pred EEEE-EeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEE
Q 005656 106 HILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 184 (685)
Q Consensus 106 ~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 184 (685)
.++. ...++.|.+.|..+.........
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~v---------------------------------------------------- 114 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPV---------------------------------------------------- 114 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeee----------------------------------------------------
Confidence 5554 44468899998665554443321
Q ss_pred cCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec---CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEc
Q 005656 185 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 261 (685)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 261 (685)
......++++++++.++++.. ++.+.+.|..++....... .-..+ ..++++
T Consensus 115 -----------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~--------vG~~P-~~~a~~ 168 (381)
T COG3391 115 -----------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP--------VGNTP-TGVAVD 168 (381)
T ss_pred -----------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe--------cCCCc-ceEEEC
Confidence 124568899999999888776 6899999999888877643 11123 899999
Q ss_pred CCCCEEEEEE-CCCeEEEEECCCCceEE-----EeecCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEEEEe
Q 005656 262 STNTLMISAG-YHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFE 332 (685)
Q Consensus 262 ~~~~~l~s~s-~dg~i~iwd~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~ 332 (685)
|+|..++.+. .++.|.+.|..+..... ..........+.++|+|..+.+.... +.+...|..++.....-.
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 9999766665 78999999987766653 23334556788999999976666554 599999999988766522
Q ss_pred cCCC-CeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeEEeeccc----eEEEEEcCCCC
Q 005656 333 GHTD-RITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMD 389 (685)
Q Consensus 333 ~h~~-~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~~~~~----v~~v~~spdg~ 389 (685)
.-.. ....+.++|+|+++.+.. ..+.+.+-|..+......+..... +..+++.+...
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 311 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD 311 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence 1111 566789999999888874 448899999998888777654433 66666666543
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=7e-06 Score=86.66 Aligned_cols=72 Identities=24% Similarity=0.443 Sum_probs=64.1
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
+++++|+|..- +||.|-.-|.+.+|...+.+...... .|..+|..+.||++|..|+|+..-|.|.+|..+..
T Consensus 62 atSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~htv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 62 ATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETHTVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred hhhhccChHHH-HHhhccccceeEEEecCCceeeeecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 57889999866 89999999999999988877766665 89999999999999999999999999999988753
No 337
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.32 E-value=0.0011 Score=68.73 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=74.1
Q ss_pred EEEECCCCce----EEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 005656 277 KVWDFKGRDL----KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 352 (685)
Q Consensus 277 ~iwd~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s 352 (685)
.+|++...++ +..+...+.+.+++++|+...++.|+.||+|.+||...+... +..+.-.++.++|+|+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEE
Confidence 4566655443 234556789999999999999999999999999998776332 3334556889999999999999
Q ss_pred EeCCCcEEEEEcCCCceeeE
Q 005656 353 SGMDGSLRIWDVILARQIDA 372 (685)
Q Consensus 353 ~s~Dg~I~iwd~~~~~~i~~ 372 (685)
|+..|.+.+||+.-+.....
T Consensus 317 ~s~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 317 GSEQGELQCFDMALSPIKMQ 336 (545)
T ss_pred EcCCceEEEEEeecCcccee
Confidence 99999999999976554333
No 338
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.32 E-value=0.00026 Score=69.39 Aligned_cols=256 Identities=16% Similarity=0.182 Sum_probs=145.3
Q ss_pred EEEEccCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEeeccc--cc----CeeEEEEeCCCcEEEEe--cCCC
Q 005656 7 ALAFSSDGQPLLASGA----------SSGVISIWNLEKRRLQSVIREAH--DN----AIISLHFFANEPVLMSA--SADN 68 (685)
Q Consensus 7 ~l~fspdg~~~latg~----------~dg~I~vwd~~~~~~~~~~~~~h--~~----~V~~l~~sp~~~~l~s~--s~D~ 68 (685)
.+..||||+ .+++++ ..-.|.+||..+-.....+.... .. ....++++.|+++++.. +--.
T Consensus 40 ~~~~spdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCCCC-EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 467899999 666532 34469999999987766544221 11 23446778888876654 3456
Q ss_pred cEEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 147 (685)
Q Consensus 69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (685)
+|.|-|+... +.+.... ..-|.-..|. .+-+.+.|.||.+.-..+........-...
T Consensus 119 SVtVVDl~~~----kvv~ei~----~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~-------------- 176 (342)
T PF06433_consen 119 SVTVVDLAAK----KVVGEID----TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK-------------- 176 (342)
T ss_dssp EEEEEETTTT----EEEEEEE----GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE--------------
T ss_pred eEEEEECCCC----ceeeeec----CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc--------------
Confidence 7778877765 5554432 1223333443 346888899999999888744332211000
Q ss_pred ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656 148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 227 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 227 (685)
+++. .....+..-+++..+..++.-+.+|.|+
T Consensus 177 ----------------------------------~F~~--------------~~dp~f~~~~~~~~~~~~~F~Sy~G~v~ 208 (342)
T PF06433_consen 177 ----------------------------------VFDP--------------DDDPLFEHPAYSRDGGRLYFVSYEGNVY 208 (342)
T ss_dssp ----------------------------------ESST--------------TTS-B-S--EEETTTTEEEEEBTTSEEE
T ss_pred ----------------------------------ccCC--------------CCcccccccceECCCCeEEEEecCCEEE
Confidence 0000 0111111223344455555566677777
Q ss_pred EEECCCCccccccccc----cccccCCCCcCEEEEEEcCCCCEEEEEEC---CC-------eEEEEECCCCceEEEeecC
Q 005656 228 RFNLQSGISRGSYLDM----SERSNYAHNGEVVGVACDSTNTLMISAGY---HG-------DIKVWDFKGRDLKSRWEVG 293 (685)
Q Consensus 228 ~~d~~~~~~~~~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg-------~i~iwd~~~~~~~~~~~~~ 293 (685)
-.|+..........-. ......-..+.-.-+++++....|++.-. +| .|.++|+.+++.+..+...
T Consensus 209 ~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~ 288 (342)
T PF06433_consen 209 SADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE 288 (342)
T ss_dssp EEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE
T ss_pred EEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC
Confidence 7666654422111000 00000011233445777776655554321 22 4888899999999999988
Q ss_pred CceeEEEEeecCC-EEEEE-eCCCeEEEEEcCCCeeEEEEec
Q 005656 294 CSLVKIVYHRVNG-LLATV-ADDLVIRLFDVVALRMVRKFEG 333 (685)
Q Consensus 294 ~~i~~~~~~~~~~-~l~~~-~~dg~I~i~d~~~~~~~~~~~~ 333 (685)
.++.++..+.+.+ +|++. ..++.+.+||..+|+.++++.+
T Consensus 289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 8899999999887 55544 4579999999999999999874
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.00016 Score=75.80 Aligned_cols=117 Identities=14% Similarity=0.192 Sum_probs=90.2
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
|.--+++..++ +++.|++.|.+++|+-..++....-..+-.+.+..+..+++..++|.|+..|.|.++-++.. ..+..
T Consensus 36 v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDL 113 (726)
T ss_pred EEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCcc
Confidence 44445666677 99999999999999988877655444345566777788888888999999999999987763 33332
Q ss_pred eEec---ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656 85 LRFR---SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 85 ~~~~---~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
.... ..|...|++++|++|+..+++|...|.|.+-.+..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2222 23678999999999999999999999999887765
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.31 E-value=0.00017 Score=75.37 Aligned_cols=179 Identities=16% Similarity=0.132 Sum_probs=94.7
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 284 (685)
Q Consensus 205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (685)
....+|.+.++ +++-..++.|.++.--.......+. ....+..+.. |..|...+. +.|.+||+.++
T Consensus 71 g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~---------~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~ 136 (443)
T PF04053_consen 71 GLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK---------LPFSVEKIFG---GNLLGVKSS-DFICFYDWETG 136 (443)
T ss_dssp -SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--------------SS-EEEEE----SSSEEEEET-TEEEEE-TTT-
T ss_pred eeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc---------CCcccceEEc---CcEEEEECC-CCEEEEEhhHc
Confidence 44667888555 5555558889986333333222221 1123444433 777777664 48999999999
Q ss_pred ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-----------eeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656 285 DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----------RMVRKFEGHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-----------~~~~~~~~h~~~I~~l~~spdg~~l~s~ 353 (685)
+.++.+.... +..+.|+++|.+++..+.+ .+.|++.... .....+..-...|.+.+|..| .++-.
T Consensus 137 ~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt 212 (443)
T PF04053_consen 137 KLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT 212 (443)
T ss_dssp -EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE
T ss_pred ceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE
Confidence 9999998764 8999999999999998865 6677664432 123333333567889999655 44444
Q ss_pred eCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 354 GMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 354 s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+.. .++. +..|+.-..-..+.++.=+.+.|..+.+.....|+ .|..+.
T Consensus 213 T~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~-~v~~~~ 260 (443)
T PF04053_consen 213 TSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDG-NVISYE 260 (443)
T ss_dssp -TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT---EEEEE
T ss_pred cCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCC-CEEEEE
Confidence 434 6775 45555444444456666667777666666666665 555554
No 341
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.30 E-value=0.0072 Score=66.22 Aligned_cols=364 Identities=14% Similarity=0.077 Sum_probs=200.3
Q ss_pred CCcEEEEEEccC--CCC---EEEEEeCCCcEEEEe-CCCCeeeEEeecc---cccCeeEEEEeCCCcEEEEecCCCcEEE
Q 005656 2 RGAVTALAFSSD--GQP---LLASGASSGVISIWN-LEKRRLQSVIREA---HDNAIISLHFFANEPVLMSASADNSIKM 72 (685)
Q Consensus 2 ~~~V~~l~fspd--g~~---~latg~~dg~I~vwd-~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~l~s~s~D~~v~i 72 (685)
...|.|+.++|- ++. ++|+|..+..+.+-- +.+...+.....+ -...|.-..|-.|..+|.++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 357899999986 333 899998766655443 3333332222101 1234555666667889999999999999
Q ss_pred EEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656 73 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 152 (685)
Q Consensus 73 Wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (685)
+.++...+...-.+...--..|+.--.|+..++.-+.+..|+-..+|.-...-....++....
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev----------------- 672 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEV----------------- 672 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHh-----------------
Confidence 988877553333332233456777777877665555566677766775433222222211110
Q ss_pred ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC---------
Q 005656 153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG--------- 223 (685)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--------- 223 (685)
...+......-.+.++.+..+.-.+..-|--.....+.+ ......+.+++.+....+.+.+..
T Consensus 673 ---~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtv-----pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ 744 (1096)
T KOG1897|consen 673 ---NHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTV-----PLGESPRRICYQESSLTFGVLSNRIESSAEYYG 744 (1096)
T ss_pred ---hhhcccccccCCceEEEecCCceEEEEecchhhcceeee-----cCCCChhheEecccceEEEEEecccccchhhcC
Confidence 001111111222334444333332222221111111111 234455666766644444443221
Q ss_pred -----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEEC----------CCeEEEEECCCC-c-
Q 005656 224 -----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGY----------HGDIKVWDFKGR-D- 285 (685)
Q Consensus 224 -----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~----------dg~i~iwd~~~~-~- 285 (685)
..++++|-++-+......- ....---.+.+..|..+ +.++++|.. .|.|.++.+..+ +
T Consensus 745 ee~~~s~l~vlD~nTf~vl~~hef----~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L 820 (1096)
T KOG1897|consen 745 EEYEVSFLRVLDQNTFEVLSSHEF----ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL 820 (1096)
T ss_pred CcceEEEEEEecCCceeEEeeccc----cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence 1356666665544432211 00011123455557666 677777642 467788877662 2
Q ss_pred -eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 286 -LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 286 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
.+......+.+.++..- +|+++|.- +..|++|+..+.+.++.-..|..++..+...-.|..++.|..=+.+.+...
T Consensus 821 ~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred eeeeeeeeccceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 22333334555554433 36665543 478999999999888877789999999999999999999987777666554
Q ss_pred C--CCceeeEEe--eccceEEEEEcCCCCeEEEEEeCC
Q 005656 365 I--LARQIDAIH--VDVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 365 ~--~~~~i~~~~--~~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
. .|..+..-+ .+...+++.+-.+..++.+ ..++
T Consensus 898 ~~~eg~f~evArD~~p~Wmtaveil~~d~ylga-e~~g 934 (1096)
T KOG1897|consen 898 KGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA-ENSG 934 (1096)
T ss_pred eccCCceEEeehhhCccceeeEEEecCceEEee-cccc
Confidence 4 444554443 2333777777655555544 3455
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.28 E-value=0.0012 Score=63.24 Aligned_cols=213 Identities=12% Similarity=0.120 Sum_probs=116.8
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~ 83 (685)
.++.++|.|+...++|+....+.|...+. +|+.+..+.-.-.+..-.|++..++.++++.-.++.+.+.+++.......
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~ 101 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLD 101 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccc
Confidence 48999999986658888889999988897 47777777633346788999998888888877789999998855432211
Q ss_pred e-----eE--ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc---eeeEechhhHHHHHhhccccccccccCc
Q 005656 84 L-----LR--FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ---QSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 84 ~-----~~--~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
. +. ....+...+-.++|.|.++.|+.+-.....++|.+.... ............
T Consensus 102 ~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~---------------- 165 (248)
T PF06977_consen 102 RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD---------------- 165 (248)
T ss_dssp EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-----------------
T ss_pred hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc----------------
Confidence 1 11 112355678999999988888888777777888776421 111110000000
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECC
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQ 232 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~ 232 (685)
.......+.+++++|. |++++....+..|..+| .
T Consensus 166 --------------------------------------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~ 200 (248)
T PF06977_consen 166 --------------------------------------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-R 200 (248)
T ss_dssp --------------------------------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--T
T ss_pred --------------------------------------------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-C
Confidence 0022344678888885 45666666777888888 5
Q ss_pred CCcccccccccc-ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656 233 SGISRGSYLDMS-ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 279 (685)
Q Consensus 233 ~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 279 (685)
+|.....+.-.. .......-...-+|+++++|+..++ +.-+..+++
T Consensus 201 ~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 201 QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 555444332100 0000011235779999999875554 455554443
No 343
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.26 E-value=0.0023 Score=64.10 Aligned_cols=314 Identities=15% Similarity=0.144 Sum_probs=135.4
Q ss_pred eCCCCeeeEEeeccccc-----CeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC
Q 005656 31 NLEKRRLQSVIREAHDN-----AIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 104 (685)
Q Consensus 31 d~~~~~~~~~~~~~h~~-----~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 104 (685)
|..+|..+..+. .+.. -.+.=+|.+||+ +|+++..||.-.+|.++..++....+.... ........++|++
T Consensus 16 D~~TG~~VtrLT-~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 16 DPDTGHRVTRLT-PPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDD 92 (386)
T ss_dssp -TTT--EEEE-S--TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTS
T ss_pred CCCCCceEEEec-CCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC--CCCccceEEecCC
Confidence 566776666665 2222 222335678886 445555688877887776654333333322 2233356778888
Q ss_pred CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE--EcCCce-EE
Q 005656 105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC--HMDTAQ-AY 181 (685)
Q Consensus 105 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~ 181 (685)
+.++.......|+-.|+.+.+....+... .+|....+. ..+... +.
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-------------------------------~~~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVP-------------------------------DDWKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE---------------------------------TTEEEEEEEEE-TTSSEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECC-------------------------------cccccccceeeCCCccEEEE
Confidence 88877766678888888776644333210 111110000 011111 01
Q ss_pred EEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEc
Q 005656 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 261 (685)
Q Consensus 182 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 261 (685)
+........ +. .. +..- +.+..+--...|...|+.+|+....+ .-...+..+.|+
T Consensus 142 ~e~~~~d~~------~l---~~------~~~f-~e~~~a~p~~~i~~idl~tG~~~~v~---------~~~~wlgH~~fs 196 (386)
T PF14583_consen 142 IEISREDWK------PL---TK------WKGF-REFYEARPHCRIFTIDLKTGERKVVF---------EDTDWLGHVQFS 196 (386)
T ss_dssp EEEEGGG--------------S------HHHH-HHHHHC---EEEEEEETTT--EEEEE---------EESS-EEEEEEE
T ss_pred EEEeehhcc------Cc---cc------cHHH-HHHHhhCCCceEEEEECCCCceeEEE---------ecCccccCcccC
Confidence 110000000 00 00 0000 00000011234667788887765544 344567788899
Q ss_pred CCCCEEEEEECCC-----eEEEEECC--CCce--EEEeecCCceeEEEEeecCCEEEEEe-----CCCeEEEEEcCCCee
Q 005656 262 STNTLMISAGYHG-----DIKVWDFK--GRDL--KSRWEVGCSLVKIVYHRVNGLLATVA-----DDLVIRLFDVVALRM 327 (685)
Q Consensus 262 ~~~~~l~s~s~dg-----~i~iwd~~--~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~I~i~d~~~~~~ 327 (685)
|....+++=+..| .-+||-++ .... +........+..=-|.|||..+..-+ .+..|.-+|+.+++.
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 8765444433332 13566554 2222 11111224455566889998554422 244677788888765
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCC----------------cEEEEEcCCCceeeEEeecc-----------ceE
Q 005656 328 VRKFEGHTDRITDFCFSEDGKWLLSSGMDG----------------SLRIWDVILARQIDAIHVDV-----------SIT 380 (685)
Q Consensus 328 ~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg----------------~I~iwd~~~~~~i~~~~~~~-----------~v~ 380 (685)
..... ......+--++||++++-=+.|. .|+++++..+.......+.. .=.
T Consensus 277 ~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 277 RRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred eEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 43222 12344556688999877444432 46678887776544333321 124
Q ss_pred EEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 381 ALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 381 ~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
.+.|||||++++..+.-.+...||.
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CCccCCCCCEEEEECCCCCCccEEE
Confidence 6799999999988887666666664
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.25 E-value=0.0014 Score=67.97 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=65.3
Q ss_pred CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 325 (685)
Q Consensus 250 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~ 325 (685)
.....|.+.+++|+...++.|+.||.|.+||...+..... ...-..+.++|||+|.++++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 6778999999999999999999999999999887643332 44567889999999999999999999999998644
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.25 E-value=0.00026 Score=74.25 Aligned_cols=125 Identities=14% Similarity=0.014 Sum_probs=88.2
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
.|...|.--++...+++++.|+.-|.+.+|+-..+. .+. ....+-.+.+..+..+++..+++.|+..|.|.++-+..
T Consensus 31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~-~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE--MRK-LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred cCcceEEEEEeecCCceEEEecccceEEEEecCchh--hhc-ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 355566666777889999999999999999755442 122 22223444556667788888888889899999987755
Q ss_pred CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656 124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 203 (685)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 203 (685)
....... ...+ ....|+.
T Consensus 108 ~~p~~~~----------------------------------------~~t~----------------------~d~~~~~ 125 (726)
T KOG3621|consen 108 ELPRDLD----------------------------------------YVTP----------------------CDKSHKC 125 (726)
T ss_pred cCCCcce----------------------------------------eecc----------------------ccccCCc
Confidence 3211110 0000 0014678
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQS 233 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~ 233 (685)
.|++++|++++..+++|...|.|..-.+.+
T Consensus 126 rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 126 RVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eEEEEEecccccEEeecCCCceEEEEEech
Confidence 899999999999999999999999988887
No 346
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.23 E-value=2.7e-05 Score=83.35 Aligned_cols=179 Identities=9% Similarity=0.152 Sum_probs=124.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCe
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 96 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~ 96 (685)
.++.|+-...+..+|+.+.+..+... --.+.|+-+.. +++.+.+|...|+|.+-|..+. +.++.+..|++.|.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~----~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF----ETIHTFDAHSGSIS 221 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeee-ccCCceEEEEe--cCcEEEeecccceEEeecCCcC----ceeeeeecccccee
Confidence 56677777778899999988877765 33444655554 5889999999999999988776 78889999999998
Q ss_pred EEEEecCCCEEEEEeC---------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCC
Q 005656 97 CIRFYANGRHILSAGQ---------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 167 (685)
Q Consensus 97 ~i~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (685)
.+.. .|+.|++||. |..|+|||++.-+....+.
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~------------------------------------ 263 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ------------------------------------ 263 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc------------------------------------
Confidence 7665 5779999985 4456777776544322221
Q ss_pred cceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEE---CCCCccccccccc
Q 005656 168 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFN---LQSGISRGSYLDM 243 (685)
Q Consensus 168 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d---~~~~~~~~~~~~~ 243 (685)
......-+.|.|. ...+++.+..|...+.| +.+......+.
T Consensus 264 ---------------------------------~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v-- 308 (1118)
T KOG1275|consen 264 ---------------------------------FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV-- 308 (1118)
T ss_pred ---------------------------------cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEE--
Confidence 0111122334442 34577778888888888 33322221111
Q ss_pred cccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 280 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 280 (685)
......+..++++++++.++.|..+|.|.+|.
T Consensus 309 -----~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 309 -----NPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred -----ccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 13345599999999999999999999999997
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00025 Score=73.80 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=91.4
Q ss_pred eEEEEEccCCCEEEEEe-cCC--cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCC--eEEE
Q 005656 205 VKACTISACGNFAVLGT-AGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHG--DIKV 278 (685)
Q Consensus 205 v~~~~~s~~g~~l~~g~-~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg--~i~i 278 (685)
-....|+|+|+.++... .+| .|+++|+.++.... +. .-.+.-..-.|+|+|+.++..+ ..| .|.+
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt--------~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~ 310 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LT--------NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYL 310 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cc--------cCCccccCccCCCCCCEEEEEeCCCCCcceEE
Confidence 34558999998887654 344 57777888877443 21 1222223678999999887776 344 3667
Q ss_pred EECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-Ce--EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 005656 279 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-LV--IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 355 (685)
Q Consensus 279 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~ 355 (685)
++...+...+.......-..-.++|+|++++..+.. |. |.+.|+.++..++.+. +......-.|.|+|+.+...+.
T Consensus 311 ~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 311 YDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 777766654433333333378899999988877743 43 7777777665555444 4444556688999988876654
Q ss_pred C
Q 005656 356 D 356 (685)
Q Consensus 356 D 356 (685)
-
T Consensus 390 ~ 390 (425)
T COG0823 390 Q 390 (425)
T ss_pred C
Confidence 3
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.19 E-value=4.5e-05 Score=79.33 Aligned_cols=187 Identities=14% Similarity=0.108 Sum_probs=126.1
Q ss_pred CCCeEEEEEccCCCEEEEE---ecC-CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCe-
Q 005656 202 PTAVKACTISACGNFAVLG---TAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGD- 275 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g---~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~- 275 (685)
...+..-.|+|++..++.. ... ..++++++.++...... ...+.-...+|+|+|+.++.+. .||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~---------~~~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL---------NFNGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee---------ccCCccCCccCCCCCCEEEEEECCCCCc
Confidence 4556677889988775443 223 46999999988766554 2233344568999998877665 5554
Q ss_pred -EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC-C--eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656 276 -IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL 351 (685)
Q Consensus 276 -i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~ 351 (685)
|++.|+.++...+.....+.-..-.|+|+|+.++..++. | .|.++|.+.... +.+....+.-..-.|||||++++
T Consensus 263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEE
Confidence 677788877755433333444577899999988777654 3 677788877665 33332322223678999999999
Q ss_pred EEeC-CCc--EEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656 352 SSGM-DGS--LRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 352 s~s~-Dg~--I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
..+. +|. |.+.|+.++..++.+........-+|.|+|+.+...+..+
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 7764 344 7777777776666666555566778999998888776543
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.18 E-value=4.8e-05 Score=79.36 Aligned_cols=177 Identities=17% Similarity=0.196 Sum_probs=101.4
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 282 (685)
..+..+.++|+|+++++ +.+|.-.+|....... ...+.-..++|.+.++ +++-...++|.++.--
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~-------------k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN-------------KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE-------------EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc-------------cccCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 44789999999999999 6777788887332221 2234556788988554 6666668899996322
Q ss_pred CCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656 283 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw 362 (685)
+......+..+..+..+-. |.+|+..+.+ .|.+||..+++.++++... +|..+.|+++|.+++..+.+ .+.|+
T Consensus 98 ~~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 98 KNEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp EE-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred ccccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 2222223444434444433 7777777655 8999999999999999743 38999999999999988865 68888
Q ss_pred EcCCC-----------ceeeEEee-ccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 363 DVILA-----------RQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 363 d~~~~-----------~~i~~~~~-~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+.... .....+.. ...|.+.+|..| -++.|+ .. .|+.+-
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT-~~--~lkYl~ 221 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT-SN--HLKYLV 221 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--TT--EEEEEE
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc-CC--eEEEEE
Confidence 76544 13344433 667999999776 344443 22 555553
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.18 E-value=0.0011 Score=68.29 Aligned_cols=271 Identities=9% Similarity=0.046 Sum_probs=140.0
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeeccc----------------ccCeeEEEEeCCCcEEEEecC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH----------------DNAIISLHFFANEPVLMSASA 66 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h----------------~~~V~~l~~sp~~~~l~s~s~ 66 (685)
+.+....|||+|+ .+|-.. ++.|.+++..++...+....|- -+.-..+.||||+++|+....
T Consensus 43 ~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 43 PKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp TTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred cccccceeecCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 3566789999999 666554 6889999998886555444230 112357889999998887654
Q ss_pred -CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 67 -DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 67 -D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
+..|+.+.+........ -...+..+.+-.-|...... .+.++++.+++....-.....
T Consensus 121 d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YPk~G~~np~v----~l~v~~~~~~~~~~~~~~~~~---------- 179 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDS-------QYPEVESIRYPKAGDPNPRV----SLFVVDLASGKTTELDPPNSL---------- 179 (353)
T ss_dssp E-TTS-EEEEEEESSSTE-------SS-EEEEEE--BTTS---EE----EEEEEESSSTCCCEE---HHH----------
T ss_pred CCcCCceEEeeccCCccc-------cCCcccccccCCCCCcCCce----EEEEEECCCCcEEEeeecccc----------
Confidence 45565554332211000 00112333332122222111 356677765543211100000
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC--
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-- 223 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-- 223 (685)
......+..+.|+++++.+++...+
T Consensus 180 -----------------------------------------------------~~~~~yl~~v~W~~d~~~l~~~~~nR~ 206 (353)
T PF00930_consen 180 -----------------------------------------------------NPQDYYLTRVGWSPDGKRLWVQWLNRD 206 (353)
T ss_dssp -----------------------------------------------------HTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred -----------------------------------------------------CCCccCcccceecCCCcEEEEEEcccC
Confidence 0224557788898988844444332
Q ss_pred ---CcEEEEECCCCccccccccccccccCCCCcCEEEEEEc-CCCC-EEEEEECCCe--EEEEECCCCceEEEeecCCce
Q 005656 224 ---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD-STNT-LMISAGYHGD--IKVWDFKGRDLKSRWEVGCSL 296 (685)
Q Consensus 224 ---g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~-~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~i 296 (685)
..+.++|..++.......... .+--..-....+. +++. ++.....||. |.+++..++.........-.|
T Consensus 207 q~~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V 282 (353)
T PF00930_consen 207 QNRLDLVLCDASTGETRVVLEETS----DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEV 282 (353)
T ss_dssp STEEEEEEEEECTTTCEEEEEEES----SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-E
T ss_pred CCEEEEEEEECCCCceeEEEEecC----CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceee
Confidence 246777887766544432110 0111122244443 5554 4445556664 666666666655444444556
Q ss_pred eE-EEEeecCCEEE-EEeCC----CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656 297 VK-IVYHRVNGLLA-TVADD----LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 297 ~~-~~~~~~~~~l~-~~~~d----g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~ 353 (685)
.. +.++++++.|+ ++..+ ..++..++..+..+..+....+.-..+.|||+|++++-.
T Consensus 283 ~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 283 TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 44 67788877544 45442 367777777334455565443333689999999988743
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.18 E-value=0.0032 Score=62.59 Aligned_cols=243 Identities=14% Similarity=0.141 Sum_probs=137.2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce--eE----
Q 005656 13 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL--LR---- 86 (685)
Q Consensus 13 dg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~--~~---- 86 (685)
.++ .|+.|+.+| +.+++.........+. +...|..+...|+-+.|++-+ |+.+.+++++.-...... ..
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 345 788999888 9999993333222322 344599999999888777664 599999998765322210 00
Q ss_pred ----ecccCCCCCeEEE--EecCCCEEEEEeCCCceEEEEeecCceee--EechhhHHHHHhhccccccccccCceeeee
Q 005656 87 ----FRSGHSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSR--ELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 87 ----~~~~h~~~v~~i~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
........+...+ -...+...+.+.....|.+|......... .+.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~k--------------------------- 133 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLK--------------------------- 133 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeE---------------------------
Confidence 0111223333333 11233344444445578888776532110 100
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
.. ..+..+.+++|. ++.+++|..++ ..+.|+.++....
T Consensus 134 ----------------------------------e~-----~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~ 171 (275)
T PF00780_consen 134 ----------------------------------EI-----SLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE 171 (275)
T ss_pred ----------------------------------EE-----EcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE
Confidence 00 224667888887 77888888655 8888998776644
Q ss_pred cccccccc----ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE-EEeecCCceeEEEEeecCCEEEEEeC
Q 005656 239 SYLDMSER----SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRWEVGCSLVKIVYHRVNGLLATVAD 313 (685)
Q Consensus 239 ~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~ 313 (685)
.+...... .......++..+.. +++.+|++- |..-.+.|....... ..+.....+..+++. ..+|++.+.
T Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~ 246 (275)
T PF00780_consen 172 LLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS 246 (275)
T ss_pred EeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC
Confidence 33210000 00011223333443 345555543 444455555433222 345555667777774 456666555
Q ss_pred CCeEEEEEcCCCeeEEEEecCC
Q 005656 314 DLVIRLFDVVALRMVRKFEGHT 335 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~~~~h~ 335 (685)
+.|.||++.+++.++++....
T Consensus 247 -~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 247 -NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred -CEEEEEECcCCcEEEEEECCC
Confidence 559999999999999887543
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.14 E-value=0.00026 Score=73.00 Aligned_cols=275 Identities=13% Similarity=0.140 Sum_probs=133.5
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeE-EeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC---
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS-VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD--- 79 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~--- 79 (685)
.|++++|+++.. -||+|...|.|.||.+...+... .- ..+-....|.+- ...++.-.+-|+....
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~----~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNRE----QPPDLDYNFRRF------SLNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE----------------------S--------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccC----CCcccCcccccc------cccCCCcceEEehhhCCcc
Confidence 589999999866 68999999999999876544332 10 011111111110 0011112223332211
Q ss_pred --CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 80 --GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 80 --~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
....+...+....++|++++.+.=| +++.|..+|.+.|.|++....+..-.....
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~---------------------- 128 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRES---------------------- 128 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----------------------
T ss_pred cccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeecccccc----------------------
Confidence 1123344445568999999997444 999999999999999976665544221110
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEc-----cCC---CEEEEEecCCcEEEE
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-----ACG---NFAVLGTAGGWIERF 229 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g---~~l~~g~~dg~i~~~ 229 (685)
.........++++.|+ .|+ -.+++|+..|.+.+|
T Consensus 129 --------------------------------------~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~f 170 (395)
T PF08596_consen 129 --------------------------------------FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTF 170 (395)
T ss_dssp ---------------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEE
T ss_pred --------------------------------------ccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEE
Confidence 0000223344555544 222 467888999999888
Q ss_pred ECCC---CccccccccccccccCCCCcCEEEEE-EcCC-----------------C---CEEEEEECCCeEEEEECCCCc
Q 005656 230 NLQS---GISRGSYLDMSERSNYAHNGEVVGVA-CDST-----------------N---TLMISAGYHGDIKVWDFKGRD 285 (685)
Q Consensus 230 d~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~-----------------~---~~l~s~s~dg~i~iwd~~~~~ 285 (685)
.+.- +.....+.. ....+.+.|..+. ++.+ + .-++....+..++++...+.+
T Consensus 171 kIlp~~~g~f~v~~~~----~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k 246 (395)
T PF08596_consen 171 KILPSSNGRFSVQFAG----ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSK 246 (395)
T ss_dssp EEEE-GGG-EEEEEEE----EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---
T ss_pred EEecCCCCceEEEEee----ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCc
Confidence 7642 222212211 1124455555544 2211 0 123334447889999998777
Q ss_pred eEEEeecC-CceeEEEE-----eecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC----CCeEEEEEcCCCCEEEEEe
Q 005656 286 LKSRWEVG-CSLVKIVY-----HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT----DRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 286 ~~~~~~~~-~~i~~~~~-----~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~----~~I~~l~~spdg~~l~s~s 354 (685)
........ .....+.+ ...+..|++-..+|.|++|.+..-+.+..+.-+. ..+...+++++|..++-.+
T Consensus 247 ~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 247 GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 65544422 22233344 2356688888999999999999988888776532 1234456666776555444
No 353
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.14 E-value=0.015 Score=63.90 Aligned_cols=362 Identities=13% Similarity=0.112 Sum_probs=181.6
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCC------cEEEEecCCCcEEEEEecC
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE------PVLMSASADNSIKMWIFDT 77 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~------~~l~s~s~D~~v~iWd~~~ 77 (685)
.+++...+.+.. -++.++.++.+...+...+.+....+......|.|+.++|-| ++++.|..+..+.+--+..
T Consensus 489 ~~ti~~~~~n~s-qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 489 KITIGVVSANAS-QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred ceEEEEEeecce-EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 445555555544 445555556666666666654444333456789999999742 2788887776666554433
Q ss_pred CCCCCceeEeccc--CCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 78 TDGDPRLLRFRSG--HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 78 ~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
.. ...+...+.+ -...|.-..|-.|..+|+++..||.+..|-+....-...-. +. ..+...|+.
T Consensus 568 d~-~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~------Kk-------~~lGt~P~~ 633 (1096)
T KOG1897|consen 568 DL-ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDR------KK-------VTLGTQPIS 633 (1096)
T ss_pred Cc-ceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccc------cc-------cccCCCCcE
Confidence 21 1111111111 12234444555678899999999999877665433211110 00 011111111
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE-EEEcc--CCCEEEEEecCCcEEEEECC
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA-CTISA--CGNFAVLGTAGGWIERFNLQ 232 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~--~g~~l~~g~~dg~i~~~d~~ 232 (685)
-. .++......+++++ +.+.+ +|..+.+ .+..+. .-..+.. +.|+. .+..++.+ ..+.+.+.-+.
T Consensus 634 Lr---~f~sk~~t~vfa~s-drP~v-iY~~n~k----Lv~spl--s~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid 701 (1096)
T KOG1897|consen 634 LR---TFSSKSRTAVFALS-DRPTV-IYSSNGK----LVYSPL--SLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTID 701 (1096)
T ss_pred EE---EEeeCCceEEEEeC-CCCEE-EEecCCc----EEEecc--chHHhhhhcccccccCCceEEEe-cCCceEEEEec
Confidence 11 11122222233332 22221 2221111 111110 0011111 11221 22333333 33445554443
Q ss_pred CCc--cccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-----------C---CeEEEEECCCCceEEEeecC---
Q 005656 233 SGI--SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----------H---GDIKVWDFKGRDLKSRWEVG--- 293 (685)
Q Consensus 233 ~~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----------d---g~i~iwd~~~~~~~~~~~~~--- 293 (685)
.-+ ..++. .-....+.+++.+....+++.+. . ..++++|-++.+.....+..
T Consensus 702 ~iqkl~irtv---------pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E 772 (1096)
T KOG1897|consen 702 EIQKLHIRTV---------PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNE 772 (1096)
T ss_pred chhhcceeee---------cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccc
Confidence 211 11111 22233445555553333333221 1 13677777776665544432
Q ss_pred --CceeEEEEeec-CCEEEEEeC----------CCeEEEEEcCCCeeEEEEecC--CCCeEEEEEcCCCCEEEEEeCCCc
Q 005656 294 --CSLVKIVYHRV-NGLLATVAD----------DLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDGS 358 (685)
Q Consensus 294 --~~i~~~~~~~~-~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~h--~~~I~~l~~spdg~~l~s~s~Dg~ 358 (685)
..+.++.|..| +.++++|.. .|.|.+|....++.++....+ .+.+.++..- +|++||.-+ ..
T Consensus 773 ~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~In--~~ 849 (1096)
T KOG1897|consen 773 TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGIN--QS 849 (1096)
T ss_pred eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEecC--cE
Confidence 34555668777 668888753 478888887764333333222 3445554322 677777554 57
Q ss_pred EEEEEcCCCceeeE-EeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 359 LRIWDVILARQIDA-IHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 359 I~iwd~~~~~~i~~-~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
|++|+..+.+.++. .....++..+...-.|+.+++|..-+ .|.+-.
T Consensus 850 vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~ 896 (1096)
T KOG1897|consen 850 VRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQ 896 (1096)
T ss_pred EEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEE
Confidence 99999998855543 34556688899999999999998776 666643
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.11 E-value=0.0024 Score=68.94 Aligned_cols=105 Identities=17% Similarity=0.117 Sum_probs=71.8
Q ss_pred EEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE------------------ECCCeEE
Q 005656 216 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA------------------GYHGDIK 277 (685)
Q Consensus 216 ~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~------------------s~dg~i~ 277 (685)
.+++++.+|.++.+|..+|+.+...... ...++.+| + .++.+ ..+|.+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~-----------~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV-----------EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee-----------ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEE
Confidence 6788899999999999999987765310 11122333 2 22221 2467888
Q ss_pred EEECCCCceEEEeecC---------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec
Q 005656 278 VWDFKGRDLKSRWEVG---------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG 333 (685)
Q Consensus 278 iwd~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~ 333 (685)
-.|..+++.+.+.... .+...-.....+..+++++.||.++.+|..+|+.+.+++-
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 8999999888777654 1111111223567899999999999999999999888764
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.11 E-value=0.0051 Score=64.41 Aligned_cols=129 Identities=13% Similarity=0.127 Sum_probs=77.6
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-CCC
Q 005656 259 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-TDR 337 (685)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-~~~ 337 (685)
.++.+....+....++.+.+.+-...+ .+...+++..++.||+++++|.-..+|.+.+...+-.+....+... ...
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~---~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFK---QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEccccc---cccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 345555555666666677755433221 1334578999999999999999999999999987766666666543 345
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
...|.|.-+...++.- ...|.+.... + ..+.|.-++...+..-.| +|+|....
T Consensus 262 p~~~~WCG~dav~l~~--~~~l~lvg~~-~------------~~~~~~~~~~~~l~~E~D--G~riit~~ 314 (410)
T PF04841_consen 262 PKQMAWCGNDAVVLSW--EDELLLVGPD-G------------DSISFWYDGPVILVSEID--GVRIITST 314 (410)
T ss_pred CcEEEEECCCcEEEEe--CCEEEEECCC-C------------CceEEeccCceEEeccCC--ceEEEeCC
Confidence 6777776554333222 2334444411 1 112333344444444445 58888654
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.10 E-value=0.0089 Score=62.61 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=80.5
Q ss_pred EEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 005656 209 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS 288 (685)
Q Consensus 209 ~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (685)
.++.+....+....++.+.+.+-..... . ...+++..+++||++++++.-..+|.+.+.+..-.+...
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i---------~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~ 252 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---I---------DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC 252 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---c---------cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE
Confidence 4455556666666667777555433211 1 334689999999999999999999999999877666666
Q ss_pred EeecC--CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 289 RWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 289 ~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
.+... .....+.|+-+...++.- ...+.++. ..... +.|..++..++..-.|| |||..-..
T Consensus 253 e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg-----------~~~~~---~~~~~~~~~~l~~E~DG-~riit~~~ 315 (410)
T PF04841_consen 253 EFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG-----------PDGDS---ISFWYDGPVILVSEIDG-VRIITSTS 315 (410)
T ss_pred EeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC-----------CCCCc---eEEeccCceEEeccCCc-eEEEeCCc
Confidence 66655 566677776443222211 12232222 12222 24444555555555676 77776554
Q ss_pred CceeeEE
Q 005656 367 ARQIDAI 373 (685)
Q Consensus 367 ~~~i~~~ 373 (685)
-+.++.+
T Consensus 316 ~~~l~~V 322 (410)
T PF04841_consen 316 HEFLQRV 322 (410)
T ss_pred eEEEEEC
Confidence 4444443
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.10 E-value=0.00079 Score=68.57 Aligned_cols=184 Identities=15% Similarity=0.142 Sum_probs=112.1
Q ss_pred CCEEEEEec---------C-CcEEEEECCCC-ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656 214 GNFAVLGTA---------G-GWIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282 (685)
Q Consensus 214 g~~l~~g~~---------d-g~i~~~d~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 282 (685)
..++++|+. . |.|.+|++... .....+.. .......++|++++-- .+ +++.+. ++.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~---i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL---IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE---EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE---EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEcc
Confidence 578888865 2 89999999984 11111100 0111457889999876 33 344443 5899999998
Q ss_pred CCc-eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CeeEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656 283 GRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGS 358 (685)
Q Consensus 283 ~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~--~h~~~I~~l~~spdg~~l~s~s~Dg~ 358 (685)
..+ +...-..+.++........++++++|.....+.++..+. ...+..+. .....++++.|-+|++.++.+..+|.
T Consensus 116 ~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp TTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred CcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 877 655544444444455555578999999888888875443 33233332 23455889999877789999999999
Q ss_pred EEEEEcCC-------Cc----eeeEEeeccceEEE---EEcCC--CC------eEEEEEeCCCeEEEE
Q 005656 359 LRIWDVIL-------AR----QIDAIHVDVSITAL---SLSPN--MD------VLATAHVDQNGVYLW 404 (685)
Q Consensus 359 I~iwd~~~-------~~----~i~~~~~~~~v~~v---~~spd--g~------~Lat~~~d~~~I~lW 404 (685)
+.++..+. +. .+..+..+..|+++ ++.|. +. .++.++.+| +|...
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G-~Ig~l 262 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDG-SIGVL 262 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS--EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCC-EEEEE
Confidence 99998863 22 23445556668888 66662 22 377777787 67643
No 358
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=98.09 E-value=0.0063 Score=61.51 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCeEEEEECCCCceEEEeecC---CceeEEEEeec--CCEEEEE-eCCCeEEEEEc-CCC----eeEEEEecC-------
Q 005656 273 HGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRV--NGLLATV-ADDLVIRLFDV-VAL----RMVRKFEGH------- 334 (685)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~--~~~l~~~-~~dg~I~i~d~-~~~----~~~~~~~~h------- 334 (685)
..++.+||+.+.+.++++..+ .....+.|..+ ..+-++| .-..+|..|-- ..+ +.+..+..-
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 468999999999999999886 34556666544 3332222 23344544433 433 222222211
Q ss_pred ----------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCC---ceeeEEeec-----------------cceEEEE
Q 005656 335 ----------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA---RQIDAIHVD-----------------VSITALS 383 (685)
Q Consensus 335 ----------~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~---~~i~~~~~~-----------------~~v~~v~ 383 (685)
..-|++|..|.|.++|..+. .+|.|+-||+..- +++..+... ....-+.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq 380 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ 380 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence 23489999999999998766 7899999999763 334333322 2246677
Q ss_pred EcCCCCeEEEEE
Q 005656 384 LSPNMDVLATAH 395 (685)
Q Consensus 384 ~spdg~~Lat~~ 395 (685)
.|.||+.|.+++
T Consensus 381 lS~DGkRlYvTn 392 (461)
T PF05694_consen 381 LSLDGKRLYVTN 392 (461)
T ss_dssp E-TTSSEEEEE-
T ss_pred EccCCeEEEEEe
Confidence 888888888774
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0068 Score=63.04 Aligned_cols=196 Identities=14% Similarity=0.143 Sum_probs=142.4
Q ss_pred CCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---CCeEEE
Q 005656 203 TAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKV 278 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~i 278 (685)
.....+++++.++.+++.. .++.|.++|..+......... +. ....++++++++.+..+.. ++++.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-------G~--~P~~~~~~~~~~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-------GL--GPVGLAVDPDGKYVYVANAGNGNNTVSV 144 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-------cc--CCceEEECCCCCEEEEEecccCCceEEE
Confidence 3445778888888665554 458899999777766655421 22 5678999999987776654 689999
Q ss_pred EECCCCceEEEeecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEE-E---EecCCCCeEEEEEcCCCCEEEEE
Q 005656 279 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVR-K---FEGHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 279 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~-~---~~~h~~~I~~l~~spdg~~l~s~ 353 (685)
.|-.+.+.......+.....+++.|+|+.++++. .++.|.++|..+....+ . ...-......+.++|+|.++...
T Consensus 145 id~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 145 IDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred EeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 9999998888866554348999999999666555 78899999987766554 1 01122334678999999976655
Q ss_pred eCC---CcEEEEEcCCCceeeE-Eeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 354 GMD---GSLRIWDVILARQIDA-IHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 354 s~D---g~I~iwd~~~~~~i~~-~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
... +.+...|..++..... ..... ....+..+|+|+++.+.....+.+.+-+..
T Consensus 225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred eccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 433 5899999988877765 33333 467789999999999998776678877643
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.07 E-value=1.9e-06 Score=88.32 Aligned_cols=205 Identities=17% Similarity=0.193 Sum_probs=131.9
Q ss_pred cEEEEEEccCCC-CEEEEEeCCCcEEEEeCCCCeee-EEeecccccCeeEEEEeC-CCcEEEEec----CCCcEEEEEec
Q 005656 4 AVTALAFSSDGQ-PLLASGASSGVISIWNLEKRRLQ-SVIREAHDNAIISLHFFA-NEPVLMSAS----ADNSIKMWIFD 76 (685)
Q Consensus 4 ~V~~l~fspdg~-~~latg~~dg~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp-~~~~l~s~s----~D~~v~iWd~~ 76 (685)
.+.|+++.-+.+ .++++|..+|.|.+-.+....-- ..+..+|....++++|++ |...||.|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 356777655433 58999999999999987664433 334448889999999998 456777763 36789999998
Q ss_pred CCCCCCceeEecc-cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 77 TTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 77 ~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
+.-..+..-..+. +-.....+++|..+.+.+++|...+.+.++|++........
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s------------------------- 192 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS------------------------- 192 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-------------------------
Confidence 7622222111111 23445568889888889999998889999998633211000
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECC-C
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQ-S 233 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~-~ 233 (685)
.....+..+.+.| .+++++.-. +|.|.+||.. .
T Consensus 193 --------------------------------------------vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn 227 (783)
T KOG1008|consen 193 --------------------------------------------VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN 227 (783)
T ss_pred --------------------------------------------hhhhhcccceecCCCCCceeccc-cCceeeccchhh
Confidence 1123456677788 667766655 9999999942 2
Q ss_pred C-ccccccccccccccCCCCcCEEEEEEcCCCC-EEEEEE-CCCeEEEEECC
Q 005656 234 G-ISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFK 282 (685)
Q Consensus 234 ~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s-~dg~i~iwd~~ 282 (685)
- .....+.. ........+..++|.|... .+++.. ..++|+.+|+.
T Consensus 228 ienpl~~i~~----~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 228 IENPLQIILR----NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hccHHHHHhh----CCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 1 11111110 1111223589999999643 455555 45789999986
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.04 E-value=0.0056 Score=64.90 Aligned_cols=114 Identities=15% Similarity=0.232 Sum_probs=65.8
Q ss_pred EEEEEEccCCCCEEE-EEeCCC----cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCC-----------
Q 005656 5 VTALAFSSDGQPLLA-SGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN----------- 68 (685)
Q Consensus 5 V~~l~fspdg~~~la-tg~~dg----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~----------- 68 (685)
+...++||||+ ++| +-+..| .|+++|+++++.+.... ....-.++.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~-~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGK-RLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSS-EEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCC-EEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34678999999 555 434445 49999999998765432 111223499999988766554332
Q ss_pred cEEEEEecCCCCCCceeEecccCCCC--CeEEEEecCCCEEEEEeCCC----ceEEEEeec
Q 005656 69 SIKMWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQDR----AFRLFSVIQ 123 (685)
Q Consensus 69 ~v~iWd~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~s~s~dg----~i~vwd~~~ 123 (685)
.|..|.+.+......++ +...... ...+..++|+++++..+..+ .+.+.++..
T Consensus 203 ~v~~~~~gt~~~~d~lv--fe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELV--FEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEETTS-GGG-EEE--EC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEEECCCChHhCeeE--EeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 25666554432221233 2233333 45778899999887654333 345555443
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.03 E-value=0.0056 Score=58.61 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=87.1
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc---cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEE
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR---GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 278 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 278 (685)
....-.+++..++.++++--.++.+.++++...... ..+..........++..+-+++|++.++.|+.+-...-..+
T Consensus 64 ~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 64 FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRL 143 (248)
T ss_dssp -SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence 345778888888888887767899999988443221 11111111111246677999999999888877776666666
Q ss_pred EECCC---CceEEEee---------cCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCeeEEEEecCC---------C
Q 005656 279 WDFKG---RDLKSRWE---------VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRMVRKFEGHT---------D 336 (685)
Q Consensus 279 wd~~~---~~~~~~~~---------~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~---------~ 336 (685)
|.+.. ........ .-..+..+.++|... +++....+..|.++| .+|+++..+.-.. .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~ 222 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIP 222 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---
T ss_pred EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccC
Confidence 66543 11111110 114578899999765 666666778899999 6677766554222 2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656 337 RITDFCFSEDGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 337 ~I~~l~~spdg~~l~s~s~Dg~I~iw 362 (685)
..-.|+|.++|++.+ .+.-+..++|
T Consensus 223 QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 223 QPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred CccEEEECCCCCEEE-EcCCceEEEe
Confidence 477899999996544 4456655554
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.93 E-value=0.008 Score=59.70 Aligned_cols=242 Identities=9% Similarity=0.024 Sum_probs=132.6
Q ss_pred CCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhH
Q 005656 56 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 135 (685)
Q Consensus 56 p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 135 (685)
..++.|+.|+.+| +.+++..... ..... .+..+|..+...++-+.+++-+ |+.+.++++..-...........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~---~~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS---KPTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc---cceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 3577889998888 8888873222 11121 1233499999999876666655 59999999865443221100000
Q ss_pred HHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEE--EccC
Q 005656 136 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT--ISAC 213 (685)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~ 213 (685)
.+. . ...........+..++ -...
T Consensus 78 ~~~-~-----------------------------------------------------~~~~~~~~~~~v~~f~~~~~~~ 103 (275)
T PF00780_consen 78 PKS-R-----------------------------------------------------SLPTKLPETKGVSFFAVNGGHE 103 (275)
T ss_pred ccc-c-----------------------------------------------------cccccccccCCeeEEeeccccc
Confidence 000 0 0000001122333333 2233
Q ss_pred CCEEEEEecCCcEEEEECCCCc-----cccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 005656 214 GNFAVLGTAGGWIERFNLQSGI-----SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS 288 (685)
Q Consensus 214 g~~l~~g~~dg~i~~~d~~~~~-----~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (685)
+...++......|.+|...... ....+ .-...+.+++|. ++.++.|.. +...+.|+.++....
T Consensus 104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~---------~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 104 GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI---------SLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSE 171 (275)
T ss_pred cceEEEEEECCEEEEEEEECCcccccceeEEE---------EcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceE
Confidence 4444444445588888776632 22222 344778899998 456766664 558889999776655
Q ss_pred EeecCC------------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE--EEecCCCCeEEEEEcCCCCEEEEEe
Q 005656 289 RWEVGC------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR--KFEGHTDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 289 ~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~~~I~~l~~spdg~~l~s~s 354 (685)
...... ....+.--+++.+|++- |..-.+.|. .|+..+ .+.- ...+..+++ ...||+..+
T Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~ 245 (275)
T PF00780_consen 172 LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFS 245 (275)
T ss_pred EeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEEc-CCchhEEEE--ECCEEEEEC
Confidence 443221 11222222344555543 233333343 444433 2322 234566666 345888777
Q ss_pred CCCcEEEEEcCCCceeeEEeecc
Q 005656 355 MDGSLRIWDVILARQIDAIHVDV 377 (685)
Q Consensus 355 ~Dg~I~iwd~~~~~~i~~~~~~~ 377 (685)
.+ .|.||++.++++++.+..+.
T Consensus 246 ~~-~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 246 SN-SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred CC-EEEEEECcCCcEEEEEECCC
Confidence 65 59999999999999887553
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.0065 Score=60.37 Aligned_cols=236 Identities=16% Similarity=0.128 Sum_probs=129.5
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEe-
Q 005656 9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF- 87 (685)
Q Consensus 9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~- 87 (685)
.|.++...++.+--..+.|.-|+..+++..... +.+.+.++.....+..|+++.. .+.+++++.+... ..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~-t~~~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI-TLLAEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee-EEeccc
Confidence 456666646666667788888888766543332 3445566666666666666543 4667776443210 11111
Q ss_pred cccC-CCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656 88 RSGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 166 (685)
Q Consensus 88 ~~~h-~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (685)
..+. ....+.+...|+|.+.++... . ++ .+....
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~-~----~~--~~~~~~-------------------------------------- 139 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMG-Y----FD--LGKSEE-------------------------------------- 139 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCC-c----cc--cCcccc--------------------------------------
Confidence 1111 245567777888765554332 1 11 000000
Q ss_pred CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECCC--Cccccccccc
Q 005656 167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQS--GISRGSYLDM 243 (685)
Q Consensus 167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g~i~~~d~~~--~~~~~~~~~~ 243 (685)
...+ .+|.+... ....+....+-.....++|||+++.+++.... +.|+.|++.. +.....-
T Consensus 140 --------~~~G--~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~--- 203 (307)
T COG3386 140 --------RPTG--SLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRR--- 203 (307)
T ss_pred --------CCcc--eEEEEcCC---CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcc---
Confidence 0001 12222210 00000111223445789999999888777654 8899998863 2211110
Q ss_pred cccccCCCCcCEEEEEEcCCCCEEEEEECCC-eEEEEECCCCceEEEeecC-CceeEEEEee-cCCEEEEEe
Q 005656 244 SERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVA 312 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~-~~~~l~~~~ 312 (685)
.......+.+..-+++.+.+|.+.+++..+| .|.+|+.. ++++..+..+ ..+++++|-- +.+.|++.+
T Consensus 204 ~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 204 GFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred eEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 0001113456677888999998776555554 89999988 8888888887 7788888853 344444433
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.91 E-value=3.2e-06 Score=86.78 Aligned_cols=198 Identities=16% Similarity=0.195 Sum_probs=134.4
Q ss_pred CCCeEEEEEccC--CCEEEEEecCCcEEEEECCCCccc-cccccccccccCCCCcCEEEEEEcCCC-CEEEEEE----CC
Q 005656 202 PTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG----YH 273 (685)
Q Consensus 202 ~~~v~~~~~s~~--g~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s----~d 273 (685)
...+.|+++.-+ ...+++|..+|.|.+-..+..... ..+ ..+|....++++|++-. ..||.|- .|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~-------tp~~ar~Ct~lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV-------TPGYARPCTSLAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccccee-------cccccccccccccccccHHHHHhhhhhhccc
Confidence 455677776554 357899999999999887754433 222 23788899999999864 4455542 35
Q ss_pred CeEEEEECCCC--ceEEEee----cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-eeEEEEecCCCCeEEEEEcC-
Q 005656 274 GDIKVWDFKGR--DLKSRWE----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSE- 345 (685)
Q Consensus 274 g~i~iwd~~~~--~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp- 345 (685)
..+.|||+.++ .+..... ......+++|..+.+++.+|.....+.++|++.. .....+ .+..+..+..+|
T Consensus 129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPF 206 (783)
T ss_pred CCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCC
Confidence 67999999876 2222221 2245568888888889999999999999998732 111112 233466677888
Q ss_pred CCCEEEEEeCCCcEEEEEcC-C-CceeeEEeec-----cceEEEEEcCCC-CeEEEEEeCCCeEEEEEcCCC
Q 005656 346 DGKWLLSSGMDGSLRIWDVI-L-ARQIDAIHVD-----VSITALSLSPNM-DVLATAHVDQNGVYLWVNRCM 409 (685)
Q Consensus 346 dg~~l~s~s~Dg~I~iwd~~-~-~~~i~~~~~~-----~~v~~v~~spdg-~~Lat~~~d~~~I~lW~~~~~ 409 (685)
.+.|+++-. ||.|.+||.. . ..++..+... ..+..++|+|.. ..|++...|.+.|++++.+..
T Consensus 207 ~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 207 SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 778888776 9999999942 1 2233333222 238999999964 467888888889999976543
No 366
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.89 E-value=0.015 Score=62.99 Aligned_cols=106 Identities=11% Similarity=0.156 Sum_probs=67.1
Q ss_pred CCcEEEEECCCCccccccccccccc----------------------cCCC-CcCE-EEEEEcCCCCEEEEEEC-----C
Q 005656 223 GGWIERFNLQSGISRGSYLDMSERS----------------------NYAH-NGEV-VGVACDSTNTLMISAGY-----H 273 (685)
Q Consensus 223 dg~i~~~d~~~~~~~~~~~~~~~~~----------------------~~~h-~~~v-~~l~~~~~~~~l~s~s~-----d 273 (685)
+|.|..+|..+|+.+-.+....... ...+ .+.+ ..+++++...+++.+.. +
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 6789999999988876654322110 0001 1112 23477776666665542 1
Q ss_pred C-----------eEEEEECCCCceEEEeecC----------CceeEEEEeecCC---EEEEEeCCCeEEEEEcCCCeeE
Q 005656 274 G-----------DIKVWDFKGRDLKSRWEVG----------CSLVKIVYHRVNG---LLATVADDLVIRLFDVVALRMV 328 (685)
Q Consensus 274 g-----------~i~iwd~~~~~~~~~~~~~----------~~i~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~ 328 (685)
+ .|.-.|+++|+....++.. ....-+.+..+|+ .++.+..+|.++++|..+|+.+
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2 5777888999988766531 2222233334666 8889999999999999999886
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.85 E-value=0.0028 Score=64.55 Aligned_cols=217 Identities=11% Similarity=0.106 Sum_probs=126.2
Q ss_pred CcEEEEeCCCCeeeEEeecccccCeeEEEEe---CC----CcEEEEecC----------CCcEEEEEecCC-C--CCCce
Q 005656 25 GVISIWNLEKRRLQSVIREAHDNAIISLHFF---AN----EPVLMSASA----------DNSIKMWIFDTT-D--GDPRL 84 (685)
Q Consensus 25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s---p~----~~~l~s~s~----------D~~v~iWd~~~~-~--~~~~~ 84 (685)
+.|++.|..+.+.+..+.-.....+.+++.. .+ ..+++.|+. .|.|.++++... . ...+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588889888877766653344455555433 22 457777643 288999998874 1 11122
Q ss_pred eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc-eeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
+.. ....++|++++-. ++ +|+.+. .+.|.+|++...+ .......
T Consensus 82 i~~-~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~------------------------------- 126 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY------------------------------- 126 (321)
T ss_dssp EEE-EEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-------------------------------
T ss_pred EEE-EeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhhee-------------------------------
Confidence 222 3457889999877 44 444443 5789999998776 2211100
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc-cccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLD 242 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~-~~~~~~ 242 (685)
.....+.++ ...++++++|.....+.++..+.... ...+.
T Consensus 127 ------------------------------------~~~~~i~sl--~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va- 167 (321)
T PF03178_consen 127 ------------------------------------DSPFYITSL--SVFKNYILVGDAMKSVSLLRYDEENNKLILVA- 167 (321)
T ss_dssp -------------------------------------BSSSEEEE--EEETTEEEEEESSSSEEEEEEETTTE-EEEEE-
T ss_pred ------------------------------------cceEEEEEE--eccccEEEEEEcccCEEEEEEEccCCEEEEEE-
Confidence 112234444 44477999999988888885544211 11111
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC-------C--c--eEEEeecCCceeEE---EEee--cC-
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-------R--D--LKSRWEVGCSLVKI---VYHR--VN- 305 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-------~--~--~~~~~~~~~~i~~~---~~~~--~~- 305 (685)
.......++++.+-++++.++.+..+|.+.++.... + + ....+..+..++++ .+.| .+
T Consensus 168 -----~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~ 242 (321)
T PF03178_consen 168 -----RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSS 242 (321)
T ss_dssp -----EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS
T ss_pred -----ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCC
Confidence 113355688888886667899999999999998762 2 2 23445556778777 4444 12
Q ss_pred -----CEEEEEeCCCeEEEE
Q 005656 306 -----GLLATVADDLVIRLF 320 (685)
Q Consensus 306 -----~~l~~~~~dg~I~i~ 320 (685)
..++.++.+|.|.+.
T Consensus 243 ~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 243 ESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -TTEEEEEEEEETTS-EEEE
T ss_pred cccccceEEEEecCCEEEEE
Confidence 247788888888743
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.0096 Score=59.17 Aligned_cols=144 Identities=10% Similarity=0.082 Sum_probs=95.7
Q ss_pred cCEEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeC-CCeEEE
Q 005656 253 GEVVGVACDSTNTLMISAGY-----------HGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVAD-DLVIRL 319 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-dg~I~i 319 (685)
...+.+.++|+|.+.++... -|.|+.+|. .+.....+.. -...+.++||||++.++.+.. .+.|+-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 45567888899886665443 133444443 4555554444 356678999999987777765 478888
Q ss_pred EEcCC--C----e-eEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCceeeEEeec-cceEEEEEc-CCCC
Q 005656 320 FDVVA--L----R-MVRKFEGHTDRITDFCFSEDGKWLLSSGMDG-SLRIWDVILARQIDAIHVD-VSITALSLS-PNMD 389 (685)
Q Consensus 320 ~d~~~--~----~-~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg-~I~iwd~~~~~~i~~~~~~-~~v~~v~~s-pdg~ 389 (685)
|++.. + + ....+..+.+..-.++...+|.+.+++-.+| .|.+|+.. |+++..+..+ ..+++++|- |+.+
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~ 268 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLN 268 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcC
Confidence 87762 1 1 1122223456666788888888776555554 89999977 9999999988 559999984 4566
Q ss_pred eEEEEEeCC
Q 005656 390 VLATAHVDQ 398 (685)
Q Consensus 390 ~Lat~~~d~ 398 (685)
.|++++...
T Consensus 269 ~L~iTs~~~ 277 (307)
T COG3386 269 TLYITSARS 277 (307)
T ss_pred EEEEEecCC
Confidence 666665543
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00016 Score=74.76 Aligned_cols=94 Identities=18% Similarity=0.275 Sum_probs=82.5
Q ss_pred cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 292 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT-DFCFSEDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~-~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
.+..+..+.|+|.-.++|.+..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++..+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34678889999999999999999999999888 777888887888887 9999999999999999999999999999988
Q ss_pred eE--EeeccceEEEEEcC
Q 005656 371 DA--IHVDVSITALSLSP 386 (685)
Q Consensus 371 ~~--~~~~~~v~~v~~sp 386 (685)
.. +....+|.++-|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 87 55566788888873
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.66 E-value=0.0048 Score=68.22 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=95.8
Q ss_pred CCCeEEEEECCCCceEEEeecCCceeEEEEeec-------CCEEEEEeCCCeEEEEEcCCC--eeEEE-E--ecCCCCeE
Q 005656 272 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV-------NGLLATVADDLVIRLFDVVAL--RMVRK-F--EGHTDRIT 339 (685)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~-------~~~l~~~~~dg~I~i~d~~~~--~~~~~-~--~~h~~~I~ 339 (685)
....|+-.|+..|+.+..+..+..+.-..+.|+ ....++|-.++.+..||.+-. +++.. . .......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 457899999999999999998755544555554 235567888899999998753 33321 1 12345678
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 340 DFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 340 ~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
|++-+.+| +||.|+.+|.||+||--..+....+. ...+|..|..+.||+++++++.. .+-|.+.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t--yLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT--YLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc--eEEEEEE
Confidence 88888777 79999999999999953333233333 36779999999999999999855 5666653
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.59 E-value=0.0051 Score=49.74 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=70.9
Q ss_pred EEEEEEc---cCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656 5 VTALAFS---SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 81 (685)
Q Consensus 5 V~~l~fs---pdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~ 81 (685)
|++|++. -||..-|++|+.|..|++|+-+ +.+..+. -.+.|+++.-... ..++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc----
Confidence 5666654 4666789999999999999743 5666664 4567888887776 5788899999999995422
Q ss_pred CceeEecccCCCCCeEEEEecCC----CEEEEEeCCCceE
Q 005656 82 PRLLRFRSGHSAPPLCIRFYANG----RHILSAGQDRAFR 117 (685)
Q Consensus 82 ~~~~~~~~~h~~~v~~i~~~~~~----~~l~s~s~dg~i~ 117 (685)
+..+.-. ...++++.++.-. ..|++|-.+|.|-
T Consensus 73 -RlWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 -RLWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eeeeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3333322 3337777776532 3688888888764
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.024 Score=53.50 Aligned_cols=260 Identities=13% Similarity=0.100 Sum_probs=137.3
Q ss_pred EEEEccCCCCEEEEEeCCCc-EEEEeCCCCeeeEEeecccccC--eeEEEEeCCCcEEEEecCC-----CcEEEEEecCC
Q 005656 7 ALAFSSDGQPLLASGASSGV-ISIWNLEKRRLQSVIREAHDNA--IISLHFFANEPVLMSASAD-----NSIKMWIFDTT 78 (685)
Q Consensus 7 ~l~fspdg~~~latg~~dg~-I~vwd~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~l~s~s~D-----~~v~iWd~~~~ 78 (685)
.|+|+|.-..-++.+-.-|+ ..++|..+.+...++. ..++. --.=.|||||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 35566654434444443333 5677777766555543 11111 1123589999999876544 67899988743
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEE-EeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF-SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
...+..+..|.-....+.|.+||+.++.+. |-|..- |....+..
T Consensus 151 ---fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lN------------------------------ 195 (366)
T COG3490 151 ---FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELN------------------------------ 195 (366)
T ss_pred ---cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccc------------------------------
Confidence 245566778888899999999999888764 334433 21110000
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc----EEEEEC-C
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW----IERFNL-Q 232 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~----i~~~d~-~ 232 (685)
...-...+.+.+.....+-++...+...+...++.++..++|...+-+-..|. --+.-. .
T Consensus 196 ---------------ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~ 260 (366)
T COG3490 196 ---------------LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR 260 (366)
T ss_pred ---------------hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc
Confidence 00011222333322222222222232244567888888888876554432221 001111 1
Q ss_pred CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE
Q 005656 233 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 311 (685)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 311 (685)
.++... +...+......-...|-+|+.+.+..+++..+ ..+...+||..++..+..-.... +.-.-+...-+++.
T Consensus 261 ~g~~l~-~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d---aaGva~~~~gf~vs 336 (366)
T COG3490 261 KGEPLE-FLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD---AAGVAAAKGGFAVS 336 (366)
T ss_pred CCCcCc-ccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc---cccceeccCceEEe
Confidence 111111 11111111112334567788876666655555 55668899999998876543321 11222344556666
Q ss_pred eCCCeEEEEE
Q 005656 312 ADDLVIRLFD 321 (685)
Q Consensus 312 ~~dg~I~i~d 321 (685)
+.+|.+..+.
T Consensus 337 sg~G~~~~~s 346 (366)
T COG3490 337 SGQGRIIFYS 346 (366)
T ss_pred cCCceEEecc
Confidence 7778887773
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.55 E-value=0.16 Score=53.73 Aligned_cols=181 Identities=14% Similarity=0.072 Sum_probs=95.6
Q ss_pred EEEEccCCCEEEEEecCC-----------cEEEEECCCCccc--cccccccccccCCCCc-CEEEEEEcCCCCEEEEEEC
Q 005656 207 ACTISACGNFAVLGTAGG-----------WIERFNLQSGISR--GSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGY 272 (685)
Q Consensus 207 ~~~~s~~g~~l~~g~~dg-----------~i~~~d~~~~~~~--~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~ 272 (685)
.+.|.++++.++....+. .|+.|.+.++... ..+.. .... ....+..++++++++..+.
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~-------~~~~~~~~~~~~s~d~~~l~i~~~ 246 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE-------PDEPFWFVSVSRSKDGRYLFISSS 246 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--------TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee-------cCCCcEEEEEEecCcccEEEEEEE
Confidence 388999988776654332 3778888776554 22210 1222 2678889999998765442
Q ss_pred ---C-CeEEEEECCCC-----ceEEEeecCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCee---EEEEecCCCC
Q 005656 273 ---H-GDIKVWDFKGR-----DLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRM---VRKFEGHTDR 337 (685)
Q Consensus 273 ---d-g~i~iwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~~~---~~~~~~h~~~ 337 (685)
+ ..+.+.++..+ ...........+....-+..+.+++.... ++.|...++.+... ...+..|...
T Consensus 247 ~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 247 SGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp SSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred ccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc
Confidence 2 35788888764 33333333334444443444444444322 45777788877652 3355556664
Q ss_pred eEEEEEcCCCCEEEEE-eCCC--cEEEEEcCCCceeeEEeeccc--eEEEEEcCCCCeEEEE
Q 005656 338 ITDFCFSEDGKWLLSS-GMDG--SLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATA 394 (685)
Q Consensus 338 I~~l~~spdg~~l~s~-s~Dg--~I~iwd~~~~~~i~~~~~~~~--v~~v~~spdg~~Lat~ 394 (685)
+.-..+...+++|+.. -.++ .|+++++..+.....+..... |..+...++++.+...
T Consensus 327 ~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~ 388 (414)
T PF02897_consen 327 VSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFS 388 (414)
T ss_dssp EEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEE
T ss_pred eeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEE
Confidence 3333333455555544 3444 589999884444444443322 6666666665544433
No 374
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.52 E-value=0.14 Score=52.09 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=47.3
Q ss_pred eEEEeecCCceeEEEEee-------cCCEEEEEeCCCeEEEEEcCCCeeEE---EE-ecCCCCeEEEEEcCCCCEEEEEe
Q 005656 286 LKSRWEVGCSLVKIVYHR-------VNGLLATVADDLVIRLFDVVALRMVR---KF-EGHTDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 286 ~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~I~i~d~~~~~~~~---~~-~~h~~~I~~l~~spdg~~l~s~s 354 (685)
+...+..+..+..+.|.. .|.++++....+.|....+..+..+. .+ .....++.++++.|||.+.++.+
T Consensus 245 P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 245 PVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDD 324 (331)
T ss_dssp -SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-
T ss_pred cceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEEC
Confidence 334455556677777764 34566666667788888887553322 22 23445899999999999888888
Q ss_pred CCCcEE
Q 005656 355 MDGSLR 360 (685)
Q Consensus 355 ~Dg~I~ 360 (685)
.+|.|+
T Consensus 325 ~~G~iy 330 (331)
T PF07995_consen 325 SDGKIY 330 (331)
T ss_dssp TTTTEE
T ss_pred CCCeEe
Confidence 888774
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.47 E-value=0.00039 Score=44.57 Aligned_cols=39 Identities=38% Similarity=0.841 Sum_probs=34.9
Q ss_pred CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 325 ~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
++++..+..|...|+++.|+++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.003 Score=69.65 Aligned_cols=102 Identities=15% Similarity=0.330 Sum_probs=75.4
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCe
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 96 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~ 96 (685)
.+|.|++.|.+...|+...-....-...-.++|++++|+.+|.+++.|-.+|.|.+||+..+ ++++.+..|..|.+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~----k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA----KILKVITEHGAPVT 176 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC----cceeeeeecCCccc
Confidence 68888999999998887642210111134579999999999999999999999999999887 67777777777777
Q ss_pred EEEEe---cCCCEEEEEeCCCceEEEEeecC
Q 005656 97 CIRFY---ANGRHILSAGQDRAFRLFSVIQD 124 (685)
Q Consensus 97 ~i~~~---~~~~~l~s~s~dg~i~vwd~~~~ 124 (685)
++-++ .++..++++...|. +|.+.-.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEEec
Confidence 76554 34556777776665 6766433
No 377
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.41 E-value=0.13 Score=53.82 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=61.3
Q ss_pred cEEEEEEccCCCCEEEEEe--CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC----CcEEEEecCCCcEEEEEecC
Q 005656 4 AVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDT 77 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~--~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~l~s~s~D~~v~iWd~~~ 77 (685)
||..++|. ||+.++.|.- .+|.+++=| .+.+ |.-..|..+.|.|- .+.|.+......|.||.+..
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCC---ccEe-----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 57778887 5664666542 233333222 1223 34456899999984 44566666788999998864
Q ss_pred CC-CCCceeEecccC-----CCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656 78 TD-GDPRLLRFRSGH-----SAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122 (685)
Q Consensus 78 ~~-~~~~~~~~~~~h-----~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~ 122 (685)
.. ...+.+.....+ .--...+.|+|....|+.-.....-.++++.
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~ 142 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVH 142 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeee
Confidence 32 111222221111 1123567899988776665544433444443
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.30 E-value=0.01 Score=64.74 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=89.5
Q ss_pred cCEEEEEEcCCCCEEEEEE------CCC--eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC----------
Q 005656 253 GEVVGVACDSTNTLMISAG------YHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---------- 314 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s------~dg--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------- 314 (685)
..+...+++|+|+.++... .|+ .|.+++.. +.. ..+......+.-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4678899999999877665 243 45555643 222 333333458889999998877776533
Q ss_pred --CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE---EEcCCCceeeE-----Eee--ccceEEE
Q 005656 315 --LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI---WDVILARQIDA-----IHV--DVSITAL 382 (685)
Q Consensus 315 --g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~i---wd~~~~~~i~~-----~~~--~~~v~~v 382 (685)
+.+.+.++..+.... ...+.|..+.|||||..++... +|.|++ -....|. ... +.. ...+.++
T Consensus 428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence 234334444443322 2356799999999999888766 577877 4444554 111 211 2236889
Q ss_pred EEcCCCCeEEEEEeCCCeEEEEE
Q 005656 383 SLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 383 ~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
.|.+++.++ ++..++ ...+|.
T Consensus 503 ~W~~~~~L~-V~~~~~-~~~v~~ 523 (591)
T PRK13616 503 DWRTGDSLV-VGRSDP-EHPVWY 523 (591)
T ss_pred eEecCCEEE-EEecCC-CCceEE
Confidence 999999965 444443 445564
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.30 E-value=0.015 Score=63.59 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=103.6
Q ss_pred CCeEEEEEccCCCEEEEEe------cCC--cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-
Q 005656 203 TAVKACTISACGNFAVLGT------AGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH- 273 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~------~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d- 273 (685)
..+...+++|+|+.++... .++ .|++++.. +.. ..+. .+ ...+.-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt-------~g--~~~t~PsWspDG~~lw~v~dg~ 418 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL-------EG--HSLTRPSWSLDADAVWVVVDGN 418 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee-------cC--CCCCCceECCCCCceEEEecCc
Confidence 4678999999999987765 233 56666642 222 2221 02 237788999998877776532
Q ss_pred -----------CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE---EEcCCCe-eE---EEEe-cC
Q 005656 274 -----------GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL---FDVVALR-MV---RKFE-GH 334 (685)
Q Consensus 274 -----------g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i---~d~~~~~-~~---~~~~-~h 334 (685)
+.+.+.++..+.... .....|..+.|+|||..++... ++.|++ -....|. .+ +.+. +-
T Consensus 419 ~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 419 TVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGL 495 (591)
T ss_pred ceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence 233333444443333 3356799999999999888766 477777 4444453 11 1122 23
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeEEee---ccceEEEEEcCCCCeEEEEEeC
Q 005656 335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHV---DVSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~-~~~i~~~~~---~~~v~~v~~spdg~~Lat~~~d 397 (685)
...+.++.|.+++.++ .+..++.-.+|.+.- |.....+.. ..++.+++=+++ .++.+..+
T Consensus 496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~ 559 (591)
T PRK13616 496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDAR 559 (591)
T ss_pred CCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCC
Confidence 3346889999999855 555455555565442 322222222 344777777763 34444434
No 380
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0011 Score=68.70 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=73.0
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCee-EEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII-SLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
.|.-+.|+|.-. ++|++..+|.|.+.-++ .+.+.++. -|...++ +++|.|||+.||.|-.||+|++.|+..+..
T Consensus 22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~-- 96 (665)
T KOG4640|consen 22 NIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR-- 96 (665)
T ss_pred ceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc--
Confidence 467789999887 99999999999999888 55566665 5777777 999999999999999999999999988742
Q ss_pred ceeEecccCCCCCeEEEEec
Q 005656 83 RLLRFRSGHSAPPLCIRFYA 102 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~ 102 (685)
+......-..+|.++.|.+
T Consensus 97 -l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 -LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred -eeccccccccchheeeccc
Confidence 2221223455677777753
No 381
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.28 E-value=0.18 Score=48.11 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=84.1
Q ss_pred CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-
Q 005656 215 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG- 293 (685)
Q Consensus 215 ~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 293 (685)
+.....-.+|...+||..+-+....+. ..+.-.+++ .+++.|+.+.....++++|..+.+....+...
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~---------y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFP---------YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE----------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE
T ss_pred EEEEEEecCCeEEEEccccceEEEEEe---------cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE
Confidence 444555678899999999888877763 335566777 35666777766788999999887777666542
Q ss_pred -----CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec------------C---CCCeEEEEEcCCCCEEEEE
Q 005656 294 -----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG------------H---TDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 294 -----~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~------------h---~~~I~~l~~spdg~~l~s~ 353 (685)
..++-+.|. +|...|=.-....|...|..+|+++..+.- + ..-.+.||+.|..+.|...
T Consensus 170 ~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 170 NGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp TTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred CCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 345556665 566666666778899999999999887641 1 2457899999876655444
Q ss_pred e
Q 005656 354 G 354 (685)
Q Consensus 354 s 354 (685)
+
T Consensus 249 G 249 (264)
T PF05096_consen 249 G 249 (264)
T ss_dssp E
T ss_pred e
Confidence 4
No 382
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.26 E-value=0.0047 Score=68.27 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=95.1
Q ss_pred CEEEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-----CCCEEEEEECCCeEEEEECCCC--ce
Q 005656 215 NFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TNTLMISAGYHGDIKVWDFKGR--DL 286 (685)
Q Consensus 215 ~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~s~dg~i~iwd~~~~--~~ 286 (685)
+.++.. .....|+..|+..|+.+..... ....+|..++-+. .+...+.|-.+..+..||.+-. ++
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~-------~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKV-------HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeec-------CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 344433 3457899999999999887752 2233355554321 1234566777889999998843 23
Q ss_pred EE----EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656 287 KS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 287 ~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw 362 (685)
+. .+......+|++-+. ..+||+|+.+|.||+||-...+.-..+.+-..+|..|..+.||+||++.+ +..+.++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~-~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTE-DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred eeccccccccCCCceEEEecC-CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 32 222235566665554 45899999999999999544343445667789999999999999998776 4567777
Q ss_pred Ec
Q 005656 363 DV 364 (685)
Q Consensus 363 d~ 364 (685)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 75
No 383
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.00097 Score=42.59 Aligned_cols=39 Identities=31% Similarity=0.525 Sum_probs=33.8
Q ss_pred CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656 35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 74 (685)
Q Consensus 35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd 74 (685)
++....+. .|...|.++.|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556666 7999999999999999999999999999995
No 384
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.20 E-value=0.09 Score=54.28 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=55.0
Q ss_pred cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--CceeEEEEeec-----------------CC-EEEEEe
Q 005656 253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRV-----------------NG-LLATVA 312 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~-----------------~~-~l~~~~ 312 (685)
..+.+++.+|.+++.++...=|.|.++|+.++..++.++.- ..+.-+..... .. +++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 45788999999998888877899999999998887776642 11111111111 01 334455
Q ss_pred CCCeEEEEEcCCCeeEEEEe
Q 005656 313 DDLVIRLFDVVALRMVRKFE 332 (685)
Q Consensus 313 ~dg~I~i~d~~~~~~~~~~~ 332 (685)
.-|.|.||.+++|..+..+.
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cCCeEEEEecCCCCEEEEEE
Confidence 67899999998887766665
No 385
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=97.19 E-value=0.0031 Score=55.20 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhh
Q 005656 604 YLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSF 679 (685)
Q Consensus 604 ~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 679 (685)
...+.++|+|+...+...+.+.++..+...+|.+++..+.+++.+...+..|+..++.+.+..+++ ....|||.-
T Consensus 73 e~~L~piL~Fl~k~i~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~~~~~~l-~~l~G~ld~ 147 (148)
T PF09384_consen 73 EESLEPILKFLIKNITDPRYTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQEELQLQKEL-LELQGMLDM 147 (148)
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHhh
Confidence 477999999999999999999999999999999999999999999999999999999999888887 666676653
No 386
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=97.12 E-value=0.3 Score=54.57 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=50.8
Q ss_pred CCcEEEEEEccCC-----CCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeC---CC------cEEEEecC
Q 005656 2 RGAVTALAFSSDG-----QPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFA---NE------PVLMSASA 66 (685)
Q Consensus 2 ~~~V~~l~fspdg-----~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp---~~------~~l~s~s~ 66 (685)
+..|.|+++.+++ ..+++.|+.|+.+++..+....++..+. .+-..++.++.+-+ ++ -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 3568899999876 2489999999999999988665555443 13444555555543 22 25666666
Q ss_pred CCcEEEEEecCCCC
Q 005656 67 DNSIKMWIFDTTDG 80 (685)
Q Consensus 67 D~~v~iWd~~~~~~ 80 (685)
+|.+.-..++.-.+
T Consensus 662 NGvllR~~id~v~G 675 (1205)
T KOG1898|consen 662 NGVLLRFVIDTVTG 675 (1205)
T ss_pred ccEEEEEEeccccc
Confidence 66655554444433
No 387
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.09 E-value=0.29 Score=46.81 Aligned_cols=183 Identities=12% Similarity=0.045 Sum_probs=119.5
Q ss_pred CeEEEEEccCCCEEEEEecCC--cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 204 AVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
....+.+..+|.++-+.+.-| .|+.+|+.+|+......- ...----+++...+ +...-.=.++...+||.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-------~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-------PPRYFGEGITILGD-KLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--------TTT--EEEEEEETT-EEEEEESSSSEEEEEET
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-------CccccceeEEEECC-EEEEEEecCCeEEEEcc
Confidence 345677777777777766666 799999999987654421 22222334444432 33333336789999999
Q ss_pred CCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-----CCCeEEEEEcCCCCEEEEEeCC
Q 005656 282 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-----TDRITDFCFSEDGKWLLSSGMD 356 (685)
Q Consensus 282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-----~~~I~~l~~spdg~~l~s~s~D 356 (685)
.+.+.+.++.....-..++ .+++.|+.......++++|..+.+..+++.-. -..++-+.|- +|...|=.=..
T Consensus 118 ~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 118 NTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp TTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred ccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence 9999998888776555666 56777888877889999999988877776532 2346677776 67666655556
Q ss_pred CcEEEEEcCCCceeeEEee----------------ccceEEEEEcCCCCeEEEEEeC
Q 005656 357 GSLRIWDVILARQIDAIHV----------------DVSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 357 g~I~iwd~~~~~~i~~~~~----------------~~~v~~v~~spdg~~Lat~~~d 397 (685)
..|..-|..+|+.+..+.. ..-.+.+++.|..+.|.+++..
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 6788889999998887742 0127899999988877777644
No 388
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.08 E-value=0.15 Score=46.89 Aligned_cols=144 Identities=10% Similarity=0.136 Sum_probs=89.9
Q ss_pred CcCEEEEEEcCCCCEEEEEECC---------CeEEEEECCCCceEEEeecCCceeEEEEeecCC-EEEEEeCCCeEEEEE
Q 005656 252 NGEVVGVACDSTNTLMISAGYH---------GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFD 321 (685)
Q Consensus 252 ~~~v~~l~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d 321 (685)
..+...-.++|+|++++-.-.| |.++.|-.. ++....+..-.-.+.++|+.+.+ +.++-+.+..|.-||
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 4456667789999984432222 334444322 22222222223445678887777 445556677887777
Q ss_pred --cCCCe-----eEEEEecC---C-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcC-CC
Q 005656 322 --VVALR-----MVRKFEGH---T-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSP-NM 388 (685)
Q Consensus 322 --~~~~~-----~~~~~~~h---~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~sp-dg 388 (685)
..+|. .+..++.. . -..-.++...+|.+.+++-..|+|...|..+|+.+..+..+.+ ++|++|-- +-
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~ 266 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNL 266 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCc
Confidence 55553 33333321 1 1123456666888888888889999999999999999998877 99999954 33
Q ss_pred CeEEEEEe
Q 005656 389 DVLATAHV 396 (685)
Q Consensus 389 ~~Lat~~~ 396 (685)
..|++++.
T Consensus 267 d~~yvT~a 274 (310)
T KOG4499|consen 267 DILYVTTA 274 (310)
T ss_pred cEEEEEeh
Confidence 45555543
No 389
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.06 E-value=0.073 Score=43.19 Aligned_cols=100 Identities=11% Similarity=0.186 Sum_probs=70.6
Q ss_pred EEEEEEc---CCC-CEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE
Q 005656 255 VVGVACD---STN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK 330 (685)
Q Consensus 255 v~~l~~~---~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~ 330 (685)
|+++++. .+| ..|++|+.|..|++|+- ...+..+.....+++++.... ..++.+..+|+|-+|+-.. .+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee
Confidence 4555543 333 57999999999999984 467888888888998888775 6789999999999997532 2333
Q ss_pred EecCCCCeEEEEEcC-C--C-CEEEEEeCCCcEE
Q 005656 331 FEGHTDRITDFCFSE-D--G-KWLLSSGMDGSLR 360 (685)
Q Consensus 331 ~~~h~~~I~~l~~sp-d--g-~~l~s~s~Dg~I~ 360 (685)
.+. ...++++++.. + | .-|++|-.+|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 332 23366666543 3 3 3688888888764
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.03 Score=57.39 Aligned_cols=135 Identities=11% Similarity=0.213 Sum_probs=97.0
Q ss_pred EEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCC-------EEEEEeCCCeEEEEEcCCC-e-eEEEEecCC--
Q 005656 267 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-------LLATVADDLVIRLFDVVAL-R-MVRKFEGHT-- 335 (685)
Q Consensus 267 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~I~i~d~~~~-~-~~~~~~~h~-- 335 (685)
+.++.....++-.|+..|+.+..+..+..|+-+.+.|+.+ .-++|-+|..|.-||.+-. . .+..-.+|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 3445566779999999999999999988888888888754 2346777889999998732 2 222333332
Q ss_pred --CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-EEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 336 --DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID-AIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 336 --~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~-~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
....|.+-..+| ++|.||.+|.||+||- .+..-. .+. ...+|..|..+.+|++++.++.. .+-+-+
T Consensus 429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t--yLlLi~ 498 (644)
T KOG2395|consen 429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT--YLLLID 498 (644)
T ss_pred cccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc--EEEEEE
Confidence 335566666565 8999999999999997 444333 333 35569999999999999988755 555554
No 391
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.03 E-value=0.36 Score=49.93 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=60.5
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEE-EEEc-CC----------------CCE-EEEEe
Q 005656 294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD-FCFS-ED----------------GKW-LLSSG 354 (685)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~-l~~s-pd----------------g~~-l~s~s 354 (685)
..+.+++.+|++++.|+...=|.|.++|+.++..++.++|-.+.=.. +... +. ..+ ++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 44778999999999999888899999999999999988875543111 1110 10 112 33556
Q ss_pred CCCcEEEEEcCCCceeeEEeec
Q 005656 355 MDGSLRIWDVILARQIDAIHVD 376 (685)
Q Consensus 355 ~Dg~I~iwd~~~~~~i~~~~~~ 376 (685)
.-|.|.||++++|..+..+...
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEeC
Confidence 7899999999999988877654
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.13 Score=49.26 Aligned_cols=119 Identities=11% Similarity=0.150 Sum_probs=85.2
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
+.|+++.|+|+.+.++++ ...+.-.||=..+|..+.++.-..-..--.+++..++.+.++--.++.+.++.++......
T Consensus 86 ~nvS~LTynp~~rtLFav-~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCCCcceEEEe-cCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 348999999999845554 4456666776678888888763333445678899899899988889999999887763211
Q ss_pred c------eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656 83 R------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122 (685)
Q Consensus 83 ~------~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~ 122 (685)
. .+..........-.++|.|..+.|+.+-.-.-+++|.+.
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 1 111111225667889999998888888888888888776
No 393
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.01 E-value=0.18 Score=56.86 Aligned_cols=164 Identities=14% Similarity=0.175 Sum_probs=100.4
Q ss_pred cCCCEEEEEecCCcEEEEECCCCccccccccccccccC----CCCcCEEEEEEcC--CCCEEEEEEC----------CCe
Q 005656 212 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY----AHNGEVVGVACDS--TNTLMISAGY----------HGD 275 (685)
Q Consensus 212 ~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~--~~~~l~s~s~----------dg~ 275 (685)
.++..+++++.||.+.-.|..+|+....+......... .....-..+.-.| .+..+++|+. +|.
T Consensus 258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 258 DCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred ccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 36778999999999999999999988765321100000 0000000111111 1335555542 688
Q ss_pred EEEEECCCCceEEEeecCC------------------ce-eEEEEeecCCEEEEEeC------------------CCeEE
Q 005656 276 IKVWDFKGRDLKSRWEVGC------------------SL-VKIVYHRVNGLLATVAD------------------DLVIR 318 (685)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~------------------~i-~~~~~~~~~~~l~~~~~------------------dg~I~ 318 (685)
|+-+|.++|+++..+.... .+ ..+++.+...+++.+.. .++|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 9999999999988775320 01 23455555555554321 24677
Q ss_pred EEEcCCCeeEEEEecCCCCe---------EEEEEcC-CCC---EEEEEeCCCcEEEEEcCCCceeeEEee
Q 005656 319 LFDVVALRMVRKFEGHTDRI---------TDFCFSE-DGK---WLLSSGMDGSLRIWDVILARQIDAIHV 375 (685)
Q Consensus 319 i~d~~~~~~~~~~~~h~~~I---------~~l~~sp-dg~---~l~s~s~Dg~I~iwd~~~~~~i~~~~~ 375 (685)
-.|.++|+..-.++.....+ .-+.+.. +|+ .++.++.+|.++++|..+|+.+..+..
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 78889998887776422111 1122322 563 788999999999999999998876543
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.26 Score=47.22 Aligned_cols=175 Identities=10% Similarity=0.104 Sum_probs=109.7
Q ss_pred ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCc
Q 005656 89 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 168 (685)
Q Consensus 89 ~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (685)
.|-...+.++.|+|+.+.|++......-.||=...|+..+.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~----------------------------------- 126 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT----------------------------------- 126 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-----------------------------------
Confidence 355566999999999999999888887777766667666655321
Q ss_pred ceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc--cccc
Q 005656 169 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD--MSER 246 (685)
Q Consensus 169 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~--~~~~ 246 (685)
.-...-.+.+..+|.++++--.++.++++.+..+........ .+..
T Consensus 127 --------------------------------g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~ 174 (316)
T COG3204 127 --------------------------------GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLG 174 (316)
T ss_pred --------------------------------ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEecc
Confidence 123344567777778887777788888877765533322221 1111
Q ss_pred ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe----ec-------CCceeEEEEeecCC-EEEEEeCC
Q 005656 247 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW----EV-------GCSLVKIVYHRVNG-LLATVADD 314 (685)
Q Consensus 247 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~-------~~~i~~~~~~~~~~-~l~~~~~d 314 (685)
.....+...-+++|+|.+..++.+-.-.-+.||.+....-.... .. -..+..+.|++..+ +++-+..+
T Consensus 175 ~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ES 254 (316)
T COG3204 175 TTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDES 254 (316)
T ss_pred ccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCC
Confidence 11122667889999999998888877676777665532211000 00 03466777876544 66666667
Q ss_pred CeEEEEEcCCCeeEEEE
Q 005656 315 LVIRLFDVVALRMVRKF 331 (685)
Q Consensus 315 g~I~i~d~~~~~~~~~~ 331 (685)
+.+.-.|.. |.++..+
T Consensus 255 r~l~Evd~~-G~~~~~l 270 (316)
T COG3204 255 RRLLEVDLS-GEVIELL 270 (316)
T ss_pred ceEEEEecC-CCeeeeE
Confidence 777777765 3334433
No 395
>PHA02713 hypothetical protein; Provisional
Probab=96.93 E-value=0.086 Score=57.83 Aligned_cols=147 Identities=9% Similarity=0.026 Sum_probs=78.9
Q ss_pred CCCEEEEEecCC-----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC-------------
Q 005656 213 CGNFAVLGTAGG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG------------- 274 (685)
Q Consensus 213 ~g~~l~~g~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg------------- 274 (685)
+|+..++|+.+| .+..||..++.....-. .+ ........++ -+|...+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~-mp-----~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD-MP-----IALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCC-CC-----cccccccEEE--ECCEEEEEeCCCcccccccccccccc
Confidence 566667777654 48889988765432111 00 0011111122 2566677776542
Q ss_pred ----------eEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCC------CeEEEEEcCC-C--eeEEEEecC
Q 005656 275 ----------DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADD------LVIRLFDVVA-L--RMVRKFEGH 334 (685)
Q Consensus 275 ----------~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d------g~I~i~d~~~-~--~~~~~~~~h 334 (685)
.+..||..+.+-...-... .........-++++.++|+.+ ..+..||..+ . ..+..+...
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 4677887765433221111 111112233356777777654 2467899886 3 444444433
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCce
Q 005656 335 TDRITDFCFSEDGKWLLSSGMDG--SLRIWDVILARQ 369 (685)
Q Consensus 335 ~~~I~~l~~spdg~~l~s~s~Dg--~I~iwd~~~~~~ 369 (685)
......+.+ +|+..++|+.|| .+..||..+.+-
T Consensus 503 r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 503 LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred cccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 333333444 788888999888 667777666543
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.90 E-value=0.12 Score=56.66 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=52.0
Q ss_pred EEEEEeCCC------cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC-Cc---EEEEEecCCCCCCceeE
Q 005656 17 LLASGASSG------VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NS---IKMWIFDTTDGDPRLLR 86 (685)
Q Consensus 17 ~latg~~dg------~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D-~~---v~iWd~~~~~~~~~~~~ 86 (685)
+++.|+.++ .+..+|..++.-.....-.+...-.+++... +.+.++||.| |. -.+|.++.....+..+.
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a 365 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA 365 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCceeccC
Confidence 778888763 5788898887544333223344445555554 5688888888 32 12344444333333332
Q ss_pred ecccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656 87 FRSGHSAPPLCIRFYANGRHILSAGQDRA 115 (685)
Q Consensus 87 ~~~~h~~~v~~i~~~~~~~~l~s~s~dg~ 115 (685)
............. -+|...++||.||.
T Consensus 366 ~M~~~R~~~~v~~--l~g~iYavGG~dg~ 392 (571)
T KOG4441|consen 366 PMNTKRSDFGVAV--LDGKLYAVGGFDGE 392 (571)
T ss_pred CccCccccceeEE--ECCEEEEEeccccc
Confidence 2222222222222 25778888888864
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.90 E-value=0.0027 Score=57.88 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=68.6
Q ss_pred CCEEEEEECCCeEEEEECCC-CceEEEeec-CCceeEEE-EeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-CCeE
Q 005656 264 NTLMISAGYHGDIKVWDFKG-RDLKSRWEV-GCSLVKIV-YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRIT 339 (685)
Q Consensus 264 ~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~-~~~i~~~~-~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~I~ 339 (685)
+..++.|+.+|.|++|+... +........ ...+.++. --.++.+..+++.||.|+.|++.-.+.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 45688999999999998772 111111111 12333322 23345588899999999999999988888777787 5555
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 005656 340 DFCFSEDGKWLLSS--GMDGSLRIWDVIL 366 (685)
Q Consensus 340 ~l~~spdg~~l~s~--s~Dg~I~iwd~~~ 366 (685)
....+..++.++.+ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555566666666 6666677776653
No 398
>PHA02713 hypothetical protein; Provisional
Probab=96.89 E-value=0.11 Score=56.89 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=52.2
Q ss_pred cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC------CeEEEEECCC-CceEEE--eecCCc
Q 005656 225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH------GDIKVWDFKG-RDLKSR--WEVGCS 295 (685)
Q Consensus 225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d------g~i~iwd~~~-~~~~~~--~~~~~~ 295 (685)
.+..||..+......-. ...+... .+++ .-+++..+.||.+ ..+..||..+ .+-... +.....
T Consensus 433 ~ve~YDP~td~W~~v~~-----m~~~r~~--~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 433 KVIRYDTVNNIWETLPN-----FWTGTIR--PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred eEEEECCCCCeEeecCC-----CCccccc--CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 47788888775532211 0001111 1222 2246666667654 2467899886 443322 222211
Q ss_pred eeEEEEeecCCEEEEEeCCC--eEEEEEcCCCeeEEEEecC
Q 005656 296 LVKIVYHRVNGLLATVADDL--VIRLFDVVALRMVRKFEGH 334 (685)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~~h 334 (685)
...++ .-+|++.++|+.++ .+..||..+.+-......|
T Consensus 505 ~~~~~-~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 505 ALHTI-LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred cceeE-EECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 12222 23678888998888 6777887776543333334
No 399
>PRK10115 protease 2; Provisional
Probab=96.88 E-value=1.2 Score=50.33 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=38.1
Q ss_pred EEEEEEccCCCCEEEEE-eCC----CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC
Q 005656 5 VTALAFSSDGQPLLASG-ASS----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 66 (685)
Q Consensus 5 V~~l~fspdg~~~latg-~~d----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~ 66 (685)
+..+.+||||+ +||.+ +.+ ..|++-|+.++..+.... ... -..++|++|++.|+.+..
T Consensus 129 l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~--~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 129 LGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNV--EPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCc--ceEEEEeeCCCEEEEEEe
Confidence 66788999999 66644 333 358899998886433322 121 256999999986655543
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.0044 Score=68.46 Aligned_cols=100 Identities=17% Similarity=0.287 Sum_probs=77.3
Q ss_pred CCCEEEEEECCCeEEEEECCCCce--EEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEE
Q 005656 263 TNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 340 (685)
Q Consensus 263 ~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~ 340 (685)
.+..++.|+..|.+-..|..+.-. .+-....+++++++|+.+|.+++.|-.+|.|.+||+.+++.++.+..|..+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 455788888889999888875311 222334589999999999999999999999999999999999999877777665
Q ss_pred EE---EcCCCCEEEEEeCCCcEEEEEc
Q 005656 341 FC---FSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 341 l~---~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
+- +..++..++++..-|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 54 4446667888877775 5654
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.74 E-value=0.91 Score=47.16 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=64.3
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeee---EEeecccccCeeEEEEeC-----CCcEEEEecCCCcEEEEEecCCCCC--
Q 005656 12 SDGQPLLASGASSGVISIWNLEKRRLQ---SVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGD-- 81 (685)
Q Consensus 12 pdg~~~latg~~dg~I~vwd~~~~~~~---~~~~~~h~~~V~~l~~sp-----~~~~l~s~s~D~~v~iWd~~~~~~~-- 81 (685)
++++..+++|+..|.++||+...+... ..+...-..+|..++.-. +...||. -.-+.+.||.+...++.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 445558999999999999998654311 112223457888887642 2224444 45567888887544332
Q ss_pred ---CceeEecccCCC--CCeEEEEecC-----CCEEEEEeCCCceEEEEeecC
Q 005656 82 ---PRLLRFRSGHSA--PPLCIRFYAN-----GRHILSAGQDRAFRLFSVIQD 124 (685)
Q Consensus 82 ---~~~~~~~~~h~~--~v~~i~~~~~-----~~~l~s~s~dg~i~vwd~~~~ 124 (685)
.-.+.....|.- ....+++-|- -.++..-+.||.+.+|+-+.-
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~ 165 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF 165 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Confidence 112222223332 2233333331 257788899999999975433
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.66 E-value=0.0024 Score=58.16 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=69.0
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~ 241 (685)
.+...|..-+.++..++.+++|...... .+.-............+....++.+..++..+|.|+.|+++.++......
T Consensus 64 ~~v~~~~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 64 QRVVTASAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred eeecccCceEEeecccceEEEecCCccc--hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 4445566678888888888888776221 11111111222333444455567799999999999999999887766553
Q ss_pred cccccccCCCC-cCEEEEEEcCCCCEEEEE--ECCCeEEEEECC
Q 005656 242 DMSERSNYAHN-GEVVGVACDSTNTLMISA--GYHGDIKVWDFK 282 (685)
Q Consensus 242 ~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~--s~dg~i~iwd~~ 282 (685)
.|+ .++........++.++.+ |.|..++.|++.
T Consensus 142 --------~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 142 --------QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred --------cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 455 445555555555555555 566666666654
No 403
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.60 E-value=0.92 Score=47.04 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=38.7
Q ss_pred cCeeEEEEeCCCcEEEEec-----------CCC-cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 47 NAIISLHFFANEPVLMSAS-----------ADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 47 ~~V~~l~~sp~~~~l~s~s-----------~D~-~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
.....|+|.++|+++++-. ..+ .|.+++-..+++.......+...-..++.+++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3467889999998777653 122 566665433344333333333334467889999888 44444443
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.59 E-value=0.62 Score=45.31 Aligned_cols=117 Identities=14% Similarity=0.147 Sum_probs=69.6
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe-cCCCCCC
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF-DTTDGDP 82 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~-~~~~~~~ 82 (685)
.+.+.++++||+.+.++...++.-.+|-...+........+ ..+....|++++...+....+...+++.. ..+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 57889999999844444423333344433333333333213 37888999999877777666677777742 2222222
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEe---CCCceEEEEeec
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQ 123 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s---~dg~i~vwd~~~ 123 (685)
..+... .-...|..++++|||..++... .++.|.+--+..
T Consensus 103 ~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 103 VEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred EEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 222221 1122899999999999887665 346666665543
No 405
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.56 E-value=0.53 Score=48.08 Aligned_cols=200 Identities=14% Similarity=0.109 Sum_probs=98.4
Q ss_pred CCCEEEEEe-cCCcEEEEECCCCcccccccccccc---ccCCCCcCEEEEEEcCCCCEEEEEE--C----CCeEEEEECC
Q 005656 213 CGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSER---SNYAHNGEVVGVACDSTNTLMISAG--Y----HGDIKVWDFK 282 (685)
Q Consensus 213 ~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~---~~~~h~~~v~~l~~~~~~~~l~s~s--~----dg~i~iwd~~ 282 (685)
..++|++.+ .++.|+++|+.+......+...... .....-..-..+-.-|+|+.++++- . -|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 6789999999865433332211110 0000112223344557888888763 2 2468889988
Q ss_pred CCceEEEeecC----CceeEEEEeecCCEEEEEeC--------------------CCeEEEEEcCCCeeEEEEecCC--C
Q 005656 283 GRDLKSRWEVG----CSLVKIVYHRVNGLLATVAD--------------------DLVIRLFDVVALRMVRKFEGHT--D 336 (685)
Q Consensus 283 ~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~--------------------dg~I~i~d~~~~~~~~~~~~h~--~ 336 (685)
+......+..+ .--..+-|.|..+.+++... ..++.+||+.+++.++++.--. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 88887777654 23456778888888877642 3589999999999999987432 2
Q ss_pred CeEEEEEcCC--CCEEEEE-eCCCcEEEEEc-CCCc----eeeEEee------------------ccceEEEEEcCCCCe
Q 005656 337 RITDFCFSED--GKWLLSS-GMDGSLRIWDV-ILAR----QIDAIHV------------------DVSITALSLSPNMDV 390 (685)
Q Consensus 337 ~I~~l~~spd--g~~l~s~-s~Dg~I~iwd~-~~~~----~i~~~~~------------------~~~v~~v~~spdg~~ 390 (685)
.+..+.|..+ ..+=+++ ...++|..|-- ..++ .+-.+.. +.-|+.+..|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3556777553 4443333 34444544433 3332 1111211 112899999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCcCC
Q 005656 391 LATAHVDQNGVYLWVNRCMFSG 412 (685)
Q Consensus 391 Lat~~~d~~~I~lW~~~~~~~~ 412 (685)
|.+++--.+.|+.||....+.|
T Consensus 326 LYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEEcccCCcEEEEecCCCCCC
Confidence 9999987779999997665544
No 406
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.55 E-value=0.32 Score=47.36 Aligned_cols=147 Identities=13% Similarity=0.045 Sum_probs=92.4
Q ss_pred CEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEE-cCCCeeEE
Q 005656 254 EVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-VVALRMVR 329 (685)
Q Consensus 254 ~v~~l~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d-~~~~~~~~ 329 (685)
.+...+++++++.++... ....++++... ...........+..-.|++++...++...+...+++. ..+++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999998776655 23345555433 3333332445788889999988777766666666663 33332221
Q ss_pred -EEec--CCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcC---CC---ceeeEEe----eccceEEEEEcCCCCeEEE
Q 005656 330 -KFEG--HTDRITDFCFSEDGKWLLSSG---MDGSLRIWDVI---LA---RQIDAIH----VDVSITALSLSPNMDVLAT 393 (685)
Q Consensus 330 -~~~~--h~~~I~~l~~spdg~~l~s~s---~Dg~I~iwd~~---~~---~~i~~~~----~~~~v~~v~~spdg~~Lat 393 (685)
.... -.+.|+.+.+||||..++... .++.|.+=-+. .+ .+...+. ....+++++|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 1221 112899999999999887655 45777777553 23 1111111 1345999999999998888
Q ss_pred EEeCCCeEE
Q 005656 394 AHVDQNGVY 402 (685)
Q Consensus 394 ~~~d~~~I~ 402 (685)
+...+..+.
T Consensus 183 ~~~~~~~~~ 191 (253)
T PF10647_consen 183 GRSAGGPVV 191 (253)
T ss_pred eCCCCCcee
Confidence 876654333
No 407
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=96.53 E-value=0.015 Score=50.17 Aligned_cols=113 Identities=17% Similarity=0.241 Sum_probs=84.8
Q ss_pred HHHHHhhccccCChHHHHHHHhcCC----------cchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcC
Q 005656 552 FIQLLHSCAEMKNFSAFTDYIKSLS----------PSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCR 621 (685)
Q Consensus 552 ~~~~l~~~~~~~~~~~~~~~l~~~~----------~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 621 (685)
+.+.|.-|.+.+--..++++++.+- -..||..|..|.. ..+..+|+|+..+-...
T Consensus 13 y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~---------------~~l~~LL~~ir~WNTNs 77 (141)
T PF08625_consen 13 YKEALRLALKLDHPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDD---------------EQLEKLLRFIRDWNTNS 77 (141)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhcccccccchHHHHHHHHHhcCH---------------HHHHHHHHHHHHhhccc
Confidence 4444444444444344444444332 2457777777754 66889999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcc-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhc
Q 005656 622 NNFEFIQAVIRLFLKIHGE-TVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFL 680 (685)
Q Consensus 622 ~~~e~~~~~l~~~l~~h~~-~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (685)
|+....|..|+.+|+.|.- .|.+.|.+.+.++.|....++-.+|++++.+ ...+|.|.
T Consensus 78 r~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~~L~q-~syllDy~ 136 (141)
T PF08625_consen 78 RTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLDRLLQ-KSYLLDYT 136 (141)
T ss_pred ccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999998764 4678899999999999999999999999854 45666664
No 408
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.36 Score=45.90 Aligned_cols=140 Identities=20% Similarity=0.186 Sum_probs=93.9
Q ss_pred EEEEEcCCC-CEEEEEECCCe-EEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCC
Q 005656 256 VGVACDSTN-TLMISAGYHGD-IKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVAL 325 (685)
Q Consensus 256 ~~l~~~~~~-~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~ 325 (685)
.+++++|.. .-++.+-.-|+ ..++|..+.+...++... .-.-.-.|||||.+|+..-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 356777754 34555555555 567888877665554432 334456799999999877554 68999999865
Q ss_pred -eeEEEEecCCCCeEEEEEcCCCCEEEEEeC------------------CCcEEEEEcCCCceeeEEeec-----cceEE
Q 005656 326 -RMVRKFEGHTDRITDFCFSEDGKWLLSSGM------------------DGSLRIWDVILARQIDAIHVD-----VSITA 381 (685)
Q Consensus 326 -~~~~~~~~h~~~I~~l~~spdg~~l~s~s~------------------Dg~I~iwd~~~~~~i~~~~~~-----~~v~~ 381 (685)
+.+.++..|.-....+.|.+||+.|+.+.. .-++.+.|..+|.++.....+ -.+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 567788888888889999999999987643 112344455566665544333 23777
Q ss_pred EEEcCCCCeEEEEE
Q 005656 382 LSLSPNMDVLATAH 395 (685)
Q Consensus 382 v~~spdg~~Lat~~ 395 (685)
++..+||..++.+-
T Consensus 231 ld~g~dgtvwfgcQ 244 (366)
T COG3490 231 LDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeCCCCcEEEEEE
Confidence 77777776655543
No 409
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.48 E-value=0.36 Score=52.90 Aligned_cols=143 Identities=14% Similarity=0.098 Sum_probs=79.2
Q ss_pred CCCEEEEEecCC-----cEEEEECCCCccccccccccccccCCCCcCEEEEEE-cCCCCEEEEEECCC------eEEEEE
Q 005656 213 CGNFAVLGTAGG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC-DSTNTLMISAGYHG------DIKVWD 280 (685)
Q Consensus 213 ~g~~l~~g~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~s~dg------~i~iwd 280 (685)
+|...++|+.+| .+..||..+.+....-. ......+... .-+|...++||.++ ++..||
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---------m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YD 450 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---------MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYD 450 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC---------CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEc
Confidence 567778888886 47888888776543321 1112222222 22567777777554 467888
Q ss_pred CCCCceEEEeecC--CceeEEEEeecCCEEEEEeCCC-----eEEEEEcCCCeeEE--EEecCCCCeEEEEEcCCCCEEE
Q 005656 281 FKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDL-----VIRLFDVVALRMVR--KFEGHTDRITDFCFSEDGKWLL 351 (685)
Q Consensus 281 ~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg-----~I~i~d~~~~~~~~--~~~~h~~~I~~l~~spdg~~l~ 351 (685)
..+......-... ..-.. ...-++.+.++|+.|+ +|..||..+.+-.. ........+-...+ +++..+
T Consensus 451 P~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~ 527 (571)
T KOG4441|consen 451 PETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYA 527 (571)
T ss_pred CCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEE
Confidence 7776543322221 11111 2233577888888776 37788887654322 22223333333333 677777
Q ss_pred EEeCCC-----cEEEEEcCCC
Q 005656 352 SSGMDG-----SLRIWDVILA 367 (685)
Q Consensus 352 s~s~Dg-----~I~iwd~~~~ 367 (685)
.|+.|| +|..||..+.
T Consensus 528 vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 528 VGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EecccCccccceeEEcCCCCC
Confidence 888775 4666655443
No 410
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.41 E-value=0.12 Score=55.94 Aligned_cols=111 Identities=12% Similarity=0.134 Sum_probs=77.3
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEEc------
Q 005656 294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFS--EDGKWLLSSGMDGSLRIWDV------ 364 (685)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~s--pdg~~l~s~s~Dg~I~iwd~------ 364 (685)
..+..+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|-.+.|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344445555555655555556689999999887543322 357889999985 68999999999999999853
Q ss_pred ---CCCceeeEEe----eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 365 ---ILARQIDAIH----VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 365 ---~~~~~i~~~~----~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
++...+..+. .+.+|.+..|.++|.+++.++ +.++|++..
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG---Nqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG---NQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC---CEEEEECCC
Confidence 2233444443 234599999999998776663 589998743
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.40 E-value=0.64 Score=42.92 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=65.1
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEE--CCCCce-----EEEeec----C-CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656 255 VVGVACDSTNTLMI-SAGYHGDIKVWD--FKGRDL-----KSRWEV----G-CSLVKIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 255 v~~l~~~~~~~~l~-s~s~dg~i~iwd--~~~~~~-----~~~~~~----~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
-.+++|+.+.+.+. +-+.+-+|.-|| ..+|.. +..+.. . -..-.++...+|++.++.-..++|..+|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 35788987776554 445677787787 555532 222221 1 1223455566788888888899999999
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcC
Q 005656 322 VVALRMVRKFEGHTDRITDFCFSE 345 (685)
Q Consensus 322 ~~~~~~~~~~~~h~~~I~~l~~sp 345 (685)
..+|+.+.++.-....|+++||--
T Consensus 240 p~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecC
Confidence 999999999998899999999953
No 412
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.26 E-value=1.2 Score=50.28 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=114.4
Q ss_pred CCEEEEEecCCcEEEEECCCCcccccccccccccc-CCCCcCEEEEEEc----------------CCCCEEEEEECCCeE
Q 005656 214 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN-YAHNGEVVGVACD----------------STNTLMISAGYHGDI 276 (685)
Q Consensus 214 g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~----------------~~~~~l~s~s~dg~i 276 (685)
+..+++++.++.|+-+|..+|+.+..+........ ..| ...+++++. ..+..++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 67888888899999999999998877643211100 011 011223331 134578888899999
Q ss_pred EEEECCCCceEEEeecCCcee-------------EEEEee--cCCEEEEEeC----------CCeEEEEEcCCCeeEEEE
Q 005656 277 KVWDFKGRDLKSRWEVGCSLV-------------KIVYHR--VNGLLATVAD----------DLVIRLFDVVALRMVRKF 331 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~i~-------------~~~~~~--~~~~l~~~~~----------dg~I~i~d~~~~~~~~~~ 331 (685)
.-.|.++|+....+..++.+. .+.-.| .+..+++|+. +|.|+-+|..+|+.+-.+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999987765433221 011111 1446666643 688999999999998877
Q ss_pred ecC---------CC--------Ce-EEEEEcCCCCEEEEEe------------------CCCcEEEEEcCCCceeeEEee
Q 005656 332 EGH---------TD--------RI-TDFCFSEDGKWLLSSG------------------MDGSLRIWDVILARQIDAIHV 375 (685)
Q Consensus 332 ~~h---------~~--------~I-~~l~~spdg~~l~s~s------------------~Dg~I~iwd~~~~~~i~~~~~ 375 (685)
..- .+ .+ ..+++.+....++.+. ..+.|.-.|..+|+..-.+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 521 00 01 2234444433333221 134577778889988776653
Q ss_pred -ccc---------eEEEEEcC-CCC---eEEEEEeCCCeEEEEEcC
Q 005656 376 -DVS---------ITALSLSP-NMD---VLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 376 -~~~---------v~~v~~sp-dg~---~Lat~~~d~~~I~lW~~~ 407 (685)
+.. ..-+.+.. +|+ .++.++.+| .+++.|-+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G-~~~vlDr~ 477 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQG-QIYVLDRR 477 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCC-EEEEEECC
Confidence 221 11222332 553 788888776 78888743
No 413
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.25 E-value=0.014 Score=39.43 Aligned_cols=31 Identities=19% Similarity=0.461 Sum_probs=28.2
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLE 33 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~ 33 (685)
...|++++|+|... ++|.|+.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 35799999999998 99999999999999883
No 414
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.23 E-value=1.4 Score=44.94 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=41.8
Q ss_pred CCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEEcCCCceeeEE-e----eccceEEEEEcCCCCeEEEEEeCCCeE
Q 005656 334 HTDRITDFCFSE-------DGKWLLSSGMDGSLRIWDVILARQIDAI-H----VDVSITALSLSPNMDVLATAHVDQNGV 401 (685)
Q Consensus 334 h~~~I~~l~~sp-------dg~~l~s~s~Dg~I~iwd~~~~~~i~~~-~----~~~~v~~v~~spdg~~Lat~~~d~~~I 401 (685)
+...++.+.|.. .|.++++.-..+.|....+..+..+... . ....+..+++.|||.+.++...+| .|
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G-~i 329 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDG-KI 329 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTT-TE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCC-eE
Confidence 335677787764 4556666666677888887655332221 1 122599999999999988887666 55
Q ss_pred E
Q 005656 402 Y 402 (685)
Q Consensus 402 ~ 402 (685)
+
T Consensus 330 y 330 (331)
T PF07995_consen 330 Y 330 (331)
T ss_dssp E
T ss_pred e
Confidence 4
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.21 E-value=2.1 Score=45.27 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=69.6
Q ss_pred cEEEEEEccCC----CCEEEEEeCCCcEEEEeCCC-----CeeeEEeeccccc----CeeEEEEeCCCcEEEEecCCCcE
Q 005656 4 AVTALAFSSDG----QPLLASGASSGVISIWNLEK-----RRLQSVIREAHDN----AIISLHFFANEPVLMSASADNSI 70 (685)
Q Consensus 4 ~V~~l~fspdg----~~~latg~~dg~I~vwd~~~-----~~~~~~~~~~h~~----~V~~l~~sp~~~~l~s~s~D~~v 70 (685)
.|..++|.|-+ ..+||+- ....|.||.+.. ++....-...... --..+.|+|....|+.-.....-
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 48899999864 2466665 467899998752 2222221101111 12467899999888776554444
Q ss_pred EEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEe
Q 005656 71 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSV 121 (685)
Q Consensus 71 ~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~ 121 (685)
.+.++..... +....+ .-.+-|.|.+|.+||+.|+.+-. .=.-.+||-
T Consensus 137 V~~sV~~d~s--rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 137 VLPSVHCDSS--RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EeeeeeeCCc--eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 4565554332 333333 45678999999999998876643 334566764
No 416
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=1.4 Score=42.25 Aligned_cols=274 Identities=11% Similarity=0.068 Sum_probs=145.7
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccc-cCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
..+.|+.+ +...+..+.-++|.|+.+......+..-.. +--+++.. .|++...+.-|.-+-+.|+...+ .+.+
T Consensus 90 ~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdps-sP~l 163 (370)
T COG5276 90 ADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPS-SPQL 163 (370)
T ss_pred heeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCC-Ccee
Confidence 34455533 555566666799999987543333221112 33344444 48888888867677788887653 3344
Q ss_pred eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 164 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (685)
..........-..++.+ |++-..+..|+-+.+-|+........+..-
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~------------------------------- 210 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY------------------------------- 210 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-------------------------------
Confidence 44444444445667776 557777888999999998765433322100
Q ss_pred cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc
Q 005656 165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 244 (685)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~ 244 (685)
.....+.++..+++-.+++.... -+.+.|.........+...
T Consensus 211 -----------------------------------n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ssp~~~gsy- 252 (370)
T COG5276 211 -----------------------------------NTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPSSPTVFGSY- 252 (370)
T ss_pred -----------------------------------ecCCceEEEEecCCeeEEEEccc--ceEEEecCCCCCceEeecc-
Confidence 11225677777777666666544 3556666555443333110
Q ss_pred ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc---eEEEeecCC-ceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656 245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD---LKSRWEVGC-SLVKIVYHRVNGLLATVADDLVIRLF 320 (685)
Q Consensus 245 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~I~i~ 320 (685)
.......++.+.++ +++......+.-+.+-|+.+.. +...+...+ ....+..+ +.++..+..+ ...+.
T Consensus 253 ---et~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV 324 (370)
T COG5276 253 ---ETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVV 324 (370)
T ss_pred ---ccCCcccccceecc--cceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEE
Confidence 00112223333443 4455555555666666665432 111222221 22223222 4444444443 44455
Q ss_pred EcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 321 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 321 d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
|....+......+....+.+.+.+-+.+.+.+...++-+.||+.
T Consensus 325 ~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 325 DASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred eCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 55443333333333333444455556677888888999999985
No 417
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.094 Score=53.89 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=69.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc--EE-----EEecCCCcEEEEEecCCCCCCcee
Q 005656 13 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP--VL-----MSASADNSIKMWIFDTTDGDPRLL 85 (685)
Q Consensus 13 dg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l-----~s~s~D~~v~iWd~~~~~~~~~~~ 85 (685)
+...++.+|.....++--|++.|+.+.... -|.. |+-+.+.|+.+ .| +.|-.|+.|+-||....+.. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc--ee
Confidence 334344456666678888999999999988 5555 88888888754 22 33556889999988754321 22
Q ss_pred EecccCC----CCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656 86 RFRSGHS----APPLCIRFYANGRHILSAGQDRAFRLFSV 121 (685)
Q Consensus 86 ~~~~~h~----~~v~~i~~~~~~~~l~s~s~dg~i~vwd~ 121 (685)
....+|. ....|.+-..+| ++++||.+|.||+||-
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR 458 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh
Confidence 2223332 234455544455 8999999999999985
No 418
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.08 E-value=0.27 Score=51.01 Aligned_cols=142 Identities=14% Similarity=0.154 Sum_probs=80.2
Q ss_pred cCEEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--Cce--EEEeec-CCceeEEEEeecCCEEEEEeCCC
Q 005656 253 GEVVGVACDSTNTLMISAG-----------YHG-DIKVWDFKG--RDL--KSRWEV-GCSLVKIVYHRVNGLLATVADDL 315 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s-----------~dg-~i~iwd~~~--~~~--~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg 315 (685)
.....|+|+++|+++++-. ..+ .|.+++-.+ ++. ...+.. -.....+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4457889999998776642 223 677776542 332 122222 2445788888888 44444443
Q ss_pred eEEEEEcCC-------CeeE-EEEec----CCCCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEEc
Q 005656 316 VIRLFDVVA-------LRMV-RKFEG----HTDRITDFCFSEDGKWLLSSGMD-------------------GSLRIWDV 364 (685)
Q Consensus 316 ~I~i~d~~~-------~~~~-~~~~~----h~~~I~~l~~spdg~~l~s~s~D-------------------g~I~iwd~ 364 (685)
..++.|... .+.+ ..+.. +......++|.|||++.++-+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333445432 1112 22322 23447889999999876655421 33444554
Q ss_pred CCCceeeEEee-ccceEEEEEcCCCCeEEEEEeC
Q 005656 365 ILARQIDAIHV-DVSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 365 ~~~~~i~~~~~-~~~v~~v~~spdg~~Lat~~~d 397 (685)
.+++ +..+.. ......++|+|+|+++++-+.+
T Consensus 172 dg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCe-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence 4433 333332 2337899999999987765533
No 419
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.07 E-value=1.5 Score=42.47 Aligned_cols=165 Identities=15% Similarity=0.196 Sum_probs=92.9
Q ss_pred EEEEecCCcEEEEECCCCccc--cccccccccccCCCCcC-EEEEEEcC--CCCEEEEEE-CCCeEEEEECCCCceEE--
Q 005656 217 AVLGTAGGWIERFNLQSGISR--GSYLDMSERSNYAHNGE-VVGVACDS--TNTLMISAG-YHGDIKVWDFKGRDLKS-- 288 (685)
Q Consensus 217 l~~g~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~~h~~~-v~~l~~~~--~~~~l~s~s-~dg~i~iwd~~~~~~~~-- 288 (685)
++.++++|+|.-|+..-+... ..+.. ......+. -.++++.. .+.+|+.+. ..++|.++|-.-.++..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~----~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIV----VDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEE----EccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence 678899999999986544331 11000 00011122 34555543 345665554 67889999855332211
Q ss_pred Eeec-----C-Cc--ee------EEEE---eecCCEEEEEeCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcC----
Q 005656 289 RWEV-----G-CS--LV------KIVY---HRVNGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSE---- 345 (685)
Q Consensus 289 ~~~~-----~-~~--i~------~~~~---~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp---- 345 (685)
.+.. . .+ |. -+.| .++.+.=+.|..-|.|-+||.. |+.++++. +.-...+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence 0100 0 01 11 1111 1122222233345789999975 77777774 3344567777766
Q ss_pred --CCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-------ceEEEEEcC
Q 005656 346 --DGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALSLSP 386 (685)
Q Consensus 346 --dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-------~v~~v~~sp 386 (685)
.|.+|+---.||+|..||..+|+.+..+.... ..+.++|..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 46777766689999999999999888776432 256666654
No 420
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.06 E-value=0.022 Score=38.44 Aligned_cols=35 Identities=9% Similarity=0.183 Sum_probs=30.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 005656 334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 369 (685)
Q Consensus 334 h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~ 369 (685)
....|..++|+|...+||.++.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 5544
No 421
>PRK13684 Ycf48-like protein; Provisional
Probab=95.97 E-value=2.2 Score=43.45 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=83.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
...+..+.+.+++.++++|. .|.+..-.-..+..-.... ..-...++++.+.++++.++++ ..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~-------~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQ-------RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEee-------CCCcccceeeeEcCCCCEEEEe-cCCEEEEccC
Confidence 45678888899887665554 4544432111111111111 1344678899999998876655 4576653333
Q ss_pred CCCceEEEeec-----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe---cCCCCeEEEEEcCCCCEEEEE
Q 005656 282 KGRDLKSRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 282 ~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~---~h~~~I~~l~~spdg~~l~s~ 353 (685)
+.+..-..... ...+..+.+.+++..++++ .+|.+. .....++.-.... +-....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 44332221111 1346788888877765554 566554 3444444433332 2234578888887776655 4
Q ss_pred eCCCcEEEEE
Q 005656 354 GMDGSLRIWD 363 (685)
Q Consensus 354 s~Dg~I~iwd 363 (685)
+..|.|--|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5578887765
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.062 Score=60.12 Aligned_cols=151 Identities=7% Similarity=-0.011 Sum_probs=96.3
Q ss_pred CCCeEEEEEccCCCEEEEEecCC--cEEEEECCCCcccccccccc---ccccCCCCcCEEEEEEcCCC-CEEEEEECCCe
Q 005656 202 PTAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMS---ERSNYAHNGEVVGVACDSTN-TLMISAGYHGD 275 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg--~i~~~d~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~ 275 (685)
...+..+...+|+...++..... .|+.||+.+-.........+ ............++.|+|.- ...+.+..|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34566667777777665544433 78899987643322111100 00111223445677888753 23566678899
Q ss_pred EEEEECCCC-ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec----CCCCeEEEEEcCCCCEE
Q 005656 276 IKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG----HTDRITDFCFSEDGKWL 350 (685)
Q Consensus 276 i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~----h~~~I~~l~~spdg~~l 350 (685)
|++..+.-. .....+......++++|+|.|+.+++|-..|++.-|... ++..+.+.+ ....|.+++|-....|+
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 988877633 233345566789999999999999999999999888643 343343332 24679999998877777
Q ss_pred EEE
Q 005656 351 LSS 353 (685)
Q Consensus 351 ~s~ 353 (685)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 754
No 423
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=1.2 Score=48.16 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=40.4
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcCC
Q 005656 293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSED 346 (685)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~spd 346 (685)
++.+..+..||+.++|+.-...|.|.+.+.+..+....+. .|. +...++|..+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn 270 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN 270 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence 4778899999999999999999999999988877776665 232 2235666443
No 424
>PHA03098 kelch-like protein; Provisional
Probab=95.55 E-value=0.59 Score=51.40 Aligned_cols=146 Identities=9% Similarity=0.072 Sum_probs=72.7
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC------CeEEEEEC
Q 005656 213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH------GDIKVWDF 281 (685)
Q Consensus 213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d------g~i~iwd~ 281 (685)
++...++|+.+ ..+..||..++.....-. .+ .+... .+++. -+++..+.||.+ ..+..||.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-lp----~~r~~--~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~ 413 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPP-LI----FPRYN--PCVVN-VNNLIYVIGGISKNDELLKTVECFSL 413 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC-cC----cCCcc--ceEEE-ECCEEEEECCcCCCCcccceEEEEeC
Confidence 56666777654 357788887765432211 00 01111 11222 246666767632 35888998
Q ss_pred CCCceEEEeecCCc-eeEEEEeecCCEEEEEeCC--------CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCCEE
Q 005656 282 KGRDLKSRWEVGCS-LVKIVYHRVNGLLATVADD--------LVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWL 350 (685)
Q Consensus 282 ~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d--------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~~l 350 (685)
.+.+-...-..+.+ ....+...++.+++.|+.+ ..+.+||..+.+-... +.........+.+ +++.+
T Consensus 414 ~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iy 491 (534)
T PHA03098 414 NTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIY 491 (534)
T ss_pred CCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEE
Confidence 77654332221111 1112233456666777643 2388899887643221 1111111122223 67777
Q ss_pred EEEeCC-----CcEEEEEcCCCc
Q 005656 351 LSSGMD-----GSLRIWDVILAR 368 (685)
Q Consensus 351 ~s~s~D-----g~I~iwd~~~~~ 368 (685)
+.|+.+ +.|.+||..+.+
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEcCCcCCcccceeEEEeCCCCE
Confidence 777654 357777766553
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.13 Score=57.74 Aligned_cols=187 Identities=14% Similarity=0.102 Sum_probs=110.4
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECCCCcccccc-------cccc-ccccC-CCCcCEEEEEEcCCCCEEEE--EECCCe
Q 005656 207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSY-------LDMS-ERSNY-AHNGEVVGVACDSTNTLMIS--AGYHGD 275 (685)
Q Consensus 207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~-------~~~~-~~~~~-~h~~~v~~l~~~~~~~~l~s--~s~dg~ 275 (685)
.++.++.-..++++...+.+.++-..+-.....- .+.. ..... .....+..+...+|+...++ .+.+-.
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 4555665556666666666666544322111111 0000 00001 12235566666777654433 334447
Q ss_pred EEEEECCCCceEE--------E----eecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCe-eEEEEecCCCCeEEE
Q 005656 276 IKVWDFKGRDLKS--------R----WEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALR-MVRKFEGHTDRITDF 341 (685)
Q Consensus 276 i~iwd~~~~~~~~--------~----~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~-~~~~~~~h~~~I~~l 341 (685)
|..||+++-.... . +.......++.|.|.=. ..+++..|+.|++.-+.... .+..+. -....+++
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav 204 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAV 204 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeE
Confidence 8999987532211 0 11124456777877543 56677788999888765432 222322 45668999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-----ccceEEEEEcCCCCeEEEEE
Q 005656 342 CFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-----DVSITALSLSPNMDVLATAH 395 (685)
Q Consensus 342 ~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-----~~~v~~v~~spdg~~Lat~~ 395 (685)
+|+|.|+.++.|-..|++.-|. ++++....+.. ...|.+|+|-....+|++-+
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred EeccccceeeEecCCCeEEEee-cccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 9999999999999999998886 44554444432 24499999998888877643
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=1.4 Score=40.01 Aligned_cols=123 Identities=17% Similarity=0.205 Sum_probs=77.0
Q ss_pred EEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec---CC-
Q 005656 219 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GC- 294 (685)
Q Consensus 219 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~- 294 (685)
....+|.-..||..+-+....+ ...+.-.+++.+ +..++.++...++++-|-++-....++.. +.
T Consensus 106 LTw~egvaf~~d~~t~~~lg~~---------~y~GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p 174 (262)
T COG3823 106 LTWKEGVAFKYDADTLEELGRF---------SYEGEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP 174 (262)
T ss_pred EEeccceeEEEChHHhhhhccc---------ccCCcceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCee
Confidence 3446788889999888887766 445556677654 44466665556777777665443333221 22
Q ss_pred --ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe------------cCCCCeEEEEEcCCC-CEEEEE
Q 005656 295 --SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE------------GHTDRITDFCFSEDG-KWLLSS 353 (685)
Q Consensus 295 --~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~------------~h~~~I~~l~~spdg-~~l~s~ 353 (685)
.++-+.|- +|.+.|-.-.+..|...|..+|+.+..+. .|....+.+++.|++ +++++|
T Consensus 175 v~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 175 VSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 23333443 46666666666677777888888776554 244567889999987 555565
No 427
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.47 E-value=3.9 Score=42.63 Aligned_cols=175 Identities=10% Similarity=0.128 Sum_probs=96.3
Q ss_pred CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC-----------
Q 005656 215 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG----------- 283 (685)
Q Consensus 215 ~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~----------- 283 (685)
.++.+-+.||.+.+|+-..-.....++. .-..++ +++.+....+++++.+..+..|....
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~------~llPgP---l~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~ 216 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD------FLLPGP---LCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQ 216 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC------CCCCcC---eEEeecCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence 6788899999999999776554444321 123333 56677777899998888888886521
Q ss_pred ---------C---ceEEEeecCCceeEEEEeec---CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEE-E----
Q 005656 284 ---------R---DLKSRWEVGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC-F---- 343 (685)
Q Consensus 284 ---------~---~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~-~---- 343 (685)
+ .+..++..+..+..+..... ...+++-+ ..++...+- +|......+ ......+++ |
T Consensus 217 ~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~ 293 (418)
T PF14727_consen 217 SGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPW 293 (418)
T ss_pred ccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeEEEEEe-cCCceeeEEEEEeec
Confidence 0 12234445566666655443 22333333 345666654 343332222 233333322 2
Q ss_pred --cCCC-CEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEE---EEcCCCCeEEEEEeCCCeEEEE
Q 005656 344 --SEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITAL---SLSPNMDVLATAHVDQNGVYLW 404 (685)
Q Consensus 344 --spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v---~~spdg~~Lat~~~d~~~I~lW 404 (685)
.|+. ..++.++.++++.||. ..+++........+.++ .|..-...+++-+.+| .+.+-
T Consensus 294 ~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G-~L~v~ 357 (418)
T PF14727_consen 294 YNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEG-QLSVS 357 (418)
T ss_pred ccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCC-cEEEE
Confidence 1221 2478888999999986 33344433333332233 3333344566666665 66664
No 428
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.40 E-value=3.2 Score=41.24 Aligned_cols=145 Identities=10% Similarity=0.062 Sum_probs=78.2
Q ss_pred CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEE-cCCCee
Q 005656 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-VVALRM 327 (685)
Q Consensus 250 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d-~~~~~~ 327 (685)
.-.+.+..+..+++|+++++++....+.-||--.. -..........+..|.|.|++.+.+++ ..|.|+.=+ ....+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 44577889999999998888876556667875432 223333345889999999998876655 788888877 222222
Q ss_pred EEE----EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee----ccceEEEEEcCCCCeEEEEEeCC
Q 005656 328 VRK----FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 328 ~~~----~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~----~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
... +..-.-.+.+++|.+++...++|+ .|.+ +.....|+.-...+. +.....+.|.++.+-++.|. +|
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~-~G 296 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ-DG 296 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S-TT
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC-Cc
Confidence 211 111222388999999887777665 4544 345566665544432 44588899987766666664 55
No 429
>PHA03098 kelch-like protein; Provisional
Probab=95.38 E-value=0.49 Score=52.05 Aligned_cols=149 Identities=7% Similarity=0.032 Sum_probs=74.7
Q ss_pred ccCCCEEEEEecCC------cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEE
Q 005656 211 SACGNFAVLGTAGG------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVW 279 (685)
Q Consensus 211 s~~g~~l~~g~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iw 279 (685)
..++..+++|+.++ .+..||..++.....- ..+ ........+.+ +++.++.||.+ ..+..|
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~-----~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP-ELI-----YPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESW 363 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC-CCC-----cccccceEEEE--CCEEEEEeCCCCCEecceEEEE
Confidence 34556667776542 5788998877653221 100 11111122222 56677777755 347788
Q ss_pred ECCCCceEEEeecCCce-eEEEEeecCCEEEEEeCC------CeEEEEEcCCCeeEE--EEecCCCCeEEEEEcCCCCEE
Q 005656 280 DFKGRDLKSRWEVGCSL-VKIVYHRVNGLLATVADD------LVIRLFDVVALRMVR--KFEGHTDRITDFCFSEDGKWL 350 (685)
Q Consensus 280 d~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d------g~I~i~d~~~~~~~~--~~~~h~~~I~~l~~spdg~~l 350 (685)
|..+.+-...-..+.+. ...+..-++++++.|+.+ ..+..||..+.+-.. .+........ +...+++..
T Consensus 364 d~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~--~~~~~~~iy 441 (534)
T PHA03098 364 KPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC--AIYHDGKIY 441 (534)
T ss_pred cCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCce--EEEECCEEE
Confidence 88766543322211111 111223356677777632 468889987654322 1111111111 222356666
Q ss_pred EEEeCCC--------cEEEEEcCCCce
Q 005656 351 LSSGMDG--------SLRIWDVILARQ 369 (685)
Q Consensus 351 ~s~s~Dg--------~I~iwd~~~~~~ 369 (685)
+.||.++ .+.+||..+++-
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCce
Confidence 6776432 388888876543
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.37 E-value=0.39 Score=52.23 Aligned_cols=105 Identities=17% Similarity=0.303 Sum_probs=70.7
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec--CCceeEEEEe--ecCCEEEEEeCCCeEEEEEcC---------C
Q 005656 258 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYH--RVNGLLATVADDLVIRLFDVV---------A 324 (685)
Q Consensus 258 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~~--~~~~~l~~~~~dg~I~i~d~~---------~ 324 (685)
+.-+.-++..++.+....+.|||.+.+.+...-.. ...|.++.|. |+++.+.+.+-.+.|.+|--. +
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 33344455444444556799999998886665544 6889999886 577777777777888887532 2
Q ss_pred CeeEEEE--ecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 325 LRMVRKF--EGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 325 ~~~~~~~--~~h~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
...++.+ ..|+ .+|.+..|.++|..++.++ +.+.|+|-
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 2334443 3444 5799999999997665544 56888874
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.35 E-value=0.84 Score=50.19 Aligned_cols=150 Identities=12% Similarity=0.187 Sum_probs=94.3
Q ss_pred CCEEEEEecCCcEEEEECCCCcccc------ccccccccc--------cCCCCcCEEEEEEcC--CCCEEEEEECCCeEE
Q 005656 214 GNFAVLGTAGGWIERFNLQSGISRG------SYLDMSERS--------NYAHNGEVVGVACDS--TNTLMISAGYHGDIK 277 (685)
Q Consensus 214 g~~l~~g~~dg~i~~~d~~~~~~~~------~~~~~~~~~--------~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~ 277 (685)
++++++++ .+.|.+|++..-.... .+...+... .......|+-+.+.. ....|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67777765 7789999986533311 110000000 000122355555443 446788999999999
Q ss_pred EEECCC-------C-------------ceEEEeecCCceeEEEEe--ecCCEEEEEeCCCeEEEEEcCCC--ee-EEEEe
Q 005656 278 VWDFKG-------R-------------DLKSRWEVGCSLVKIVYH--RVNGLLATVADDLVIRLFDVVAL--RM-VRKFE 332 (685)
Q Consensus 278 iwd~~~-------~-------------~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~I~i~d~~~~--~~-~~~~~ 332 (685)
+|.+++ . ++...+..+..+..++++ ...++||+++....|.||-.... +. ...-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 997531 0 122344455788899998 78889999999888888765432 11 11111
Q ss_pred cCCCCeEEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 005656 333 GHTDRITDFCFSEDG---K---WLLSSGMDGSLRIWDV 364 (685)
Q Consensus 333 ~h~~~I~~l~~spdg---~---~l~s~s~Dg~I~iwd~ 364 (685)
.|...|.+|+|-++. . +|++++-.|.+-+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 256679999997643 2 7888999999999888
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=1.8 Score=47.04 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=33.3
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
.+.+..+.+||+.++++.-+..|.|.+.++...+....+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 467889999999999999999999999988776665554
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=3.3 Score=42.31 Aligned_cols=74 Identities=12% Similarity=0.171 Sum_probs=48.8
Q ss_pred eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656 50 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125 (685)
Q Consensus 50 ~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~ 125 (685)
+.+-|....+.|+ +-..|.+.=|.+...+ .-.++..-....++|.+|.|++|.+.++.--.+.+|.+++...++
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpn-dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPN-DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCC-CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 3444443333333 3344566777665543 223344445567799999999999999999999999998874443
No 434
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.17 E-value=3 Score=39.69 Aligned_cols=239 Identities=12% Similarity=0.054 Sum_probs=134.4
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee
Q 005656 6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 85 (685)
Q Consensus 6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 85 (685)
..++-+|||. +-.++...|.|---|-.+|+....-. +....-..+..-|||..-++-+.. .|.-. +......+..
T Consensus 65 ~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~--dpkt~evt~f 139 (353)
T COG4257 65 FDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL-AIGRL--DPKTLEVTRF 139 (353)
T ss_pred cccccCCCCc-eEEecCccccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc-eeEEe--cCcccceEEe
Confidence 3456667776 66677666777777777777665544 555566677777877765554333 22222 2221111111
Q ss_pred Ee-cccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656 86 RF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 164 (685)
Q Consensus 86 ~~-~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (685)
.. ...-........|.+.|+.-+++.. |.---.|.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP------------------------------------------- 175 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP------------------------------------------- 175 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecc-ccceecCc-------------------------------------------
Confidence 11 1222345667788888877776642 10000000
Q ss_pred cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc
Q 005656 165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 244 (685)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~ 244 (685)
....+.+|+. ........+|..|+|..-++...+..|...|..++.. ..+..
T Consensus 176 -----------a~~~i~vfpa--------------PqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~-- 227 (353)
T COG4257 176 -----------ARNVISVFPA--------------PQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQ-- 227 (353)
T ss_pred -----------ccCceeeecc--------------CCCCCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecC--
Confidence 0112222222 2244567889999999999988889999999888733 22211
Q ss_pred ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656 245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 245 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
.......-+.+-.+|.++.-+|....+.+..+|-.... -..+... ..-.++.....++.-.+-...|.|.-+|
T Consensus 228 ---P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 228 ---PNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred ---CCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecC
Confidence 11223345566678888888887777888888866544 2233322 3345555555555444444445666666
Q ss_pred cCCC
Q 005656 322 VVAL 325 (685)
Q Consensus 322 ~~~~ 325 (685)
.++.
T Consensus 304 peta 307 (353)
T COG4257 304 PETA 307 (353)
T ss_pred cccc
Confidence 5544
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.11 E-value=0.014 Score=63.20 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=90.9
Q ss_pred CCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECC--CCceEEEeec------CCceeEEEEe---ecCCEEEEEeCCCeE
Q 005656 250 AHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK--GRDLKSRWEV------GCSLVKIVYH---RVNGLLATVADDLVI 317 (685)
Q Consensus 250 ~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~--~~~~~~~~~~------~~~i~~~~~~---~~~~~l~~~~~dg~I 317 (685)
+..+.|-.+.|-... ..+. -.-|.+.+||+. .|++...+.. +..+.-+.|+ ++..++.++..++.|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 566777777774321 1111 223678889876 4443322221 2333444444 456688888888999
Q ss_pred EEEEcCCCeeEEEEecCCCCeEEEE-----------EcCCCCEEEEEeCCCcEEEEEcC-CC----ceeeEEeeccc---
Q 005656 318 RLFDVVALRMVRKFEGHTDRITDFC-----------FSEDGKWLLSSGMDGSLRIWDVI-LA----RQIDAIHVDVS--- 378 (685)
Q Consensus 318 ~i~d~~~~~~~~~~~~h~~~I~~l~-----------~spdg~~l~s~s~Dg~I~iwd~~-~~----~~i~~~~~~~~--- 378 (685)
++..+.+... ..+++|...+++++ .||||..+++++.||.+++|.+. +| +++..++.|..
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~ 286 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPR 286 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCc
Confidence 8887765432 33456877666554 58999999999999999999764 23 23333443332
Q ss_pred eEEEEEcCC---------CCeEEEEEeCCCeEEEEEc
Q 005656 379 ITALSLSPN---------MDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 379 v~~v~~spd---------g~~Lat~~~d~~~I~lW~~ 406 (685)
|-.+ |+.. -.++++++.-+..+++|.-
T Consensus 287 vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 287 VCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eeee-eccccccCCccceeEEEEecccCCcceeEeec
Confidence 2222 3321 1356666666668999963
No 436
>PRK10115 protease 2; Provisional
Probab=95.09 E-value=7.7 Score=43.88 Aligned_cols=191 Identities=11% Similarity=-0.017 Sum_probs=100.7
Q ss_pred CCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC----
Q 005656 203 TAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH---- 273 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---- 273 (685)
..+..+.++|+|++++.+.+. ..|++.|+.+|....... .. .-..++|.++++.|+.+..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--------~~--~~~~~~w~~D~~~~~y~~~~~~~~ 196 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--------DN--VEPSFVWANDSWTFYYVRKHPVTL 196 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--------cC--cceEEEEeeCCCEEEEEEecCCCC
Confidence 346778899999999886543 368899998885432211 11 11469999999877665432
Q ss_pred --CeEEEEECCCC--ceEEEeecC-Ccee-EEEEeecCCEEEEEeC---CCeEEEEEcC--CCeeEEEEecCCCCeEEEE
Q 005656 274 --GDIKVWDFKGR--DLKSRWEVG-CSLV-KIVYHRVNGLLATVAD---DLVIRLFDVV--ALRMVRKFEGHTDRITDFC 342 (685)
Q Consensus 274 --g~i~iwd~~~~--~~~~~~~~~-~~i~-~~~~~~~~~~l~~~~~---dg~I~i~d~~--~~~~~~~~~~h~~~I~~l~ 342 (685)
..|+.+++.++ +-...+... .... ....+.+++++++.+. ++.+.+|+.. ++.....+..-.+....+.
T Consensus 197 ~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (686)
T PRK10115 197 LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD 276 (686)
T ss_pred CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE
Confidence 36788888877 333333322 2222 3333447776655543 3578888843 3432222222222223222
Q ss_pred EcCCCCEEEEEeCC-Cc--EEEEEcC-CCceeeEEeec--cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 343 FSEDGKWLLSSGMD-GS--LRIWDVI-LARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 343 ~spdg~~l~s~s~D-g~--I~iwd~~-~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
+..+.+.+....+ .. |...++. .++....+... ..+..+.++ +++|+....+++.-+++..
T Consensus 277 -~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 277 -HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred -eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 3233333333222 23 4333444 23322333332 248888887 4455555555446566543
No 437
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.92 E-value=4.4 Score=40.24 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=79.3
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
...+..+..+++|.+++++.......-|+.-...-.... ......|..+.|.|++...+.+ ..|.|++=+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--------r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--------RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--------cCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 456788888999999999877766667765432221111 1445789999999998765544 7888888772
Q ss_pred C-CCceEEE--e---ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe---cCCCCeEEEEEcCCCCEEEE
Q 005656 282 K-GRDLKSR--W---EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLS 352 (685)
Q Consensus 282 ~-~~~~~~~--~---~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~---~h~~~I~~l~~spdg~~l~s 352 (685)
. ....-.. . .....+..++|.+++...++|+. |.+ +...+.|+.-..-+ .-...++.+.|.++.+-++
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~- 291 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV- 291 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-
Confidence 2 1111111 1 11245889999998877776664 433 44555565544443 2345688899976654444
Q ss_pred EeCCCcEEEE
Q 005656 353 SGMDGSLRIW 362 (685)
Q Consensus 353 ~s~Dg~I~iw 362 (685)
.+.+|.|.-|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 4567876544
No 438
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.91 E-value=4.4 Score=40.19 Aligned_cols=137 Identities=17% Similarity=0.295 Sum_probs=85.6
Q ss_pred eEEEEECCCCceEEEeecC-------CceeEEEEeecC-----CEEEEEeC-CCeEEEEEcCCCeeEEEEecCC------
Q 005656 275 DIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVN-----GLLATVAD-DLVIRLFDVVALRMVRKFEGHT------ 335 (685)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~~-----~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~------ 335 (685)
.|.+||+.+.+.++++..+ +.+..+.+.... .+++.+.. .+.|.|||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6888999999988887654 456677777632 34444433 4689999999988766654321
Q ss_pred -------------CCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCc--------------eeeEEee-ccceEEEEE
Q 005656 336 -------------DRITDFCFSE---DGKWLLSSGMDGSLRIWDVILAR--------------QIDAIHV-DVSITALSL 384 (685)
Q Consensus 336 -------------~~I~~l~~sp---dg~~l~s~s~Dg~I~iwd~~~~~--------------~i~~~~~-~~~v~~v~~ 384 (685)
..+..++.+| +|++|.-....+ -++|.+++.. .+..+.. ......+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 2366777766 777888776544 3455554321 1222222 234678889
Q ss_pred cCCCCeEEEEEeCCCeEEEEEcCCCcCCC
Q 005656 385 SPNMDVLATAHVDQNGVYLWVNRCMFSGD 413 (685)
Q Consensus 385 spdg~~Lat~~~d~~~I~lW~~~~~~~~~ 413 (685)
+++|.+.++--.. +.|..|+....|.+.
T Consensus 194 D~~G~ly~~~~~~-~aI~~w~~~~~~~~~ 221 (287)
T PF03022_consen 194 DPNGNLYFTDVEQ-NAIGCWDPDGPYTPE 221 (287)
T ss_dssp ETTTEEEEEECCC-TEEEEEETTTSB-GC
T ss_pred CCCCcEEEecCCC-CeEEEEeCCCCcCcc
Confidence 9988766666655 599999988777654
No 439
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.69 E-value=7.7 Score=42.27 Aligned_cols=266 Identities=9% Similarity=0.120 Sum_probs=120.0
Q ss_pred eCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccC-CCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEech
Q 005656 55 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQ 132 (685)
Q Consensus 55 sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 132 (685)
..++..++-+..+|.+..-.+..... ......-+. .....++.+..+| .+|+.|+.-|.=.++.+.....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l------ 290 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGG--SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNL------ 290 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEE--EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESE------
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCC--eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCc------
Confidence 34566788888999998887766432 111111222 4556777777665 4777777655444444432111
Q ss_pred hhHHHHHhhccccccccccCceeeeecccccccCCc------ceEEEEcC--CceEEEEEcCccccCceeecCCCCCCCC
Q 005656 133 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC------NVVTCHMD--TAQAYVWRLQNFVLGEHILRPCPENPTA 204 (685)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 204 (685)
.....-..+.|+..+........... .+++|... .+.+++.+..-...+.............
T Consensus 291 ----------~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~ 360 (504)
T PF10433_consen 291 ----------EVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTG 360 (504)
T ss_dssp ----------EEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEE
T ss_pred ----------EEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceE
Confidence 11112234567777666544333322 66666553 4455555432211100111100011223
Q ss_pred eEEEEEcc-CCCEEEEEecCCcEEEEECC---CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656 205 VKACTISA-CGNFAVLGTAGGWIERFNLQ---SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 280 (685)
Q Consensus 205 v~~~~~s~-~g~~l~~g~~dg~i~~~d~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 280 (685)
++.+.... ++.++++...+. -.++.+. .......... . ........+.+-.+. +..++=.. ...|++.+
T Consensus 361 iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~-~--~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~ 433 (504)
T PF10433_consen 361 IWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEE-D--GFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLID 433 (504)
T ss_dssp EEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE------TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEE
T ss_pred EEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhh-c--cCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEE
Confidence 33333322 245666666554 4445443 1222111100 0 000111222222222 33444443 34588888
Q ss_pred CCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-c----CCCCeEEEEEcC
Q 005656 281 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-G----HTDRITDFCFSE 345 (685)
Q Consensus 281 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~----h~~~I~~l~~sp 345 (685)
...++....+..+....-++.+-++.+++++..++.+..+.+.......... . ....|.|+..+|
T Consensus 434 ~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 434 LEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 8877777776554333333333446788888888999999988776643332 1 467788888776
No 440
>PHA02790 Kelch-like protein; Provisional
Probab=94.67 E-value=1.6 Score=47.18 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=30.4
Q ss_pred EEEEEeCCC-----cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCC--cEEEEEec
Q 005656 17 LLASGASSG-----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN--SIKMWIFD 76 (685)
Q Consensus 17 ~latg~~dg-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~--~v~iWd~~ 76 (685)
++++|+.++ .+..||..+++....-.-.....-.+++ .-++.+.+.||.++ ++..|+..
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~ 339 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHG 339 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECC
Confidence 677787543 4677888776543221101111111222 24677777777643 46666543
No 441
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.65 E-value=4.7 Score=39.27 Aligned_cols=235 Identities=12% Similarity=0.131 Sum_probs=127.5
Q ss_pred CeeEEEEeCCCcEEEEecCCCcEEEEEecCCC--CCC-ceeEeccc-----CCCCCeEEEEecCCCE------------E
Q 005656 48 AIISLHFFANEPVLMSASADNSIKMWIFDTTD--GDP-RLLRFRSG-----HSAPPLCIRFYANGRH------------I 107 (685)
Q Consensus 48 ~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~--~~~-~~~~~~~~-----h~~~v~~i~~~~~~~~------------l 107 (685)
.-..|+|+|.+.+-++...-+...+||.+... +.+ .++-.+.. ....++.+.|+....+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999988888888899999886221 111 22233221 2346888888754333 5
Q ss_pred EEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCc
Q 005656 108 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 187 (685)
Q Consensus 108 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 187 (685)
+.++.||+|.-|...-+.....- .+.+.+-
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~------------------------------------------------~~~~~d~-- 133 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTR------------------------------------------------AEIVVDA-- 133 (336)
T ss_pred EEEeCCceEEeecCcCCcccccc------------------------------------------------cEEEEcc--
Confidence 66777888888864322110000 0000000
Q ss_pred cccCceeecCCCCCCCC-eEEEEE--ccCCCEEEEE-ecCCcEEEEECCCCccc--cccccccccccC--------CCCc
Q 005656 188 FVLGEHILRPCPENPTA-VKACTI--SACGNFAVLG-TAGGWIERFNLQSGISR--GSYLDMSERSNY--------AHNG 253 (685)
Q Consensus 188 ~~~~~~~~~~~~~~~~~-v~~~~~--s~~g~~l~~g-~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~--------~h~~ 253 (685)
..... -+.+++ ...+++|+.. -.+++|.+||-.-.... ..+.+......+ +..-
T Consensus 134 ------------s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~l 201 (336)
T TIGR03118 134 ------------SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTL 201 (336)
T ss_pred ------------CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeE
Confidence 00111 123333 3345666554 45788999975533221 112111100000 1111
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEee------cCCEEEEEeCCCeEEEEEcCC
Q 005656 254 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR------VNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 254 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~------~~~~l~~~~~dg~I~i~d~~~ 324 (685)
.|+-..-+++...=+.+..-|.|-+||.. +.+++.+... .....++..| .+.+|+---.||+|..||..+
T Consensus 202 yVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 202 YVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred EEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence 12222223333333334445789999975 5666666544 2334455544 366787778899999999999
Q ss_pred CeeEEEEecCCCC------eEEEEEcC
Q 005656 325 LRMVRKFEGHTDR------ITDFCFSE 345 (685)
Q Consensus 325 ~~~~~~~~~h~~~------I~~l~~sp 345 (685)
++.+..+....+. ++.++|-.
T Consensus 281 G~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 281 GAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CceeeeecCCCCCeEEecCeEEeeeCC
Confidence 9988888765442 45666654
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.65 E-value=9.8 Score=42.91 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=22.2
Q ss_pred CCCCeEEEEecCCCEEEEEeCCCceEEEEe
Q 005656 92 SAPPLCIRFYANGRHILSAGQDRAFRLFSV 121 (685)
Q Consensus 92 ~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~ 121 (685)
.-.|..|.++|+|++++..|..| |.|..+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 34688899999999999888755 555544
No 443
>PRK13684 Ycf48-like protein; Provisional
Probab=94.52 E-value=6.3 Score=40.18 Aligned_cols=147 Identities=13% Similarity=0.102 Sum_probs=85.9
Q ss_pred CcCEEEEEEcCCCCEEEEEECCCeEEE-EECCCCceEEEe--ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE
Q 005656 252 NGEVVGVACDSTNTLMISAGYHGDIKV-WDFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV 328 (685)
Q Consensus 252 ~~~v~~l~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~ 328 (685)
.+.+.++.+.+++.+++++ ..|.+.. ++ ..++.-... .....+..+.+.++++.++++ ..|.+++=..+.+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4678899999988766555 4565443 22 222212222 223678899999998877765 4566653234444332
Q ss_pred EEEec----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe----eccceEEEEEcCCCCeEEEEEeCCCe
Q 005656 329 RKFEG----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH----VDVSITALSLSPNMDVLATAHVDQNG 400 (685)
Q Consensus 329 ~~~~~----h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~----~~~~v~~v~~spdg~~Lat~~~d~~~ 400 (685)
..... -...+.++.+.|+++.++ ++.+|.|. .....|+.-.... .......+.|..+++.++++. .| .
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~G-~ 324 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ-RG-V 324 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC-Cc-e
Confidence 22221 123478899999887555 44577554 4555555444432 123477888887777777663 43 6
Q ss_pred EEEEE
Q 005656 401 VYLWV 405 (685)
Q Consensus 401 I~lW~ 405 (685)
|--|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 66564
No 444
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=94.39 E-value=6.1 Score=43.32 Aligned_cols=92 Identities=12% Similarity=0.153 Sum_probs=52.5
Q ss_pred cCEEEEEEcCCCCEEEEEECCCe-----EEEEECCC---CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656 253 GEVVGVACDSTNTLMISAGYHGD-----IKVWDFKG---RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s~dg~-----i~iwd~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 324 (685)
+.-..++|-|+|..+++-+.||. |.++.-+. |..-........+...+|+.....++++. .+.+.+|-..+
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkN 325 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKN 325 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccc
Confidence 34445899999999999886653 55555332 22222233334556667766655555543 46789997766
Q ss_pred CeeEEEEecCCCCeEEEEEcC
Q 005656 325 LRMVRKFEGHTDRITDFCFSE 345 (685)
Q Consensus 325 ~~~~~~~~~h~~~I~~l~~sp 345 (685)
-.-.-...-.-..+.-+.|+|
T Consensus 326 yhWYLK~e~~ip~~s~vkwhp 346 (1243)
T COG5290 326 YHWYLKVERQIPGISYVKWHP 346 (1243)
T ss_pred eEEEEEEeecCCCcceeeecc
Confidence 433222222223355566666
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=7.2 Score=39.97 Aligned_cols=121 Identities=13% Similarity=0.126 Sum_probs=75.9
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656 200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 279 (685)
Q Consensus 200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 279 (685)
...++|.++.||+|.+.+++--.+..|.+++....+....+.. .....+..|.+.+|..+ .-++..+.. .+.+|
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~----~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y 137 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ----ECKTKNANILGFCWTSS-TEIAFITDQ-GIEFY 137 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH----HhccCcceeEEEEEecC-eeEEEEecC-CeEEE
Confidence 3466899999999999999999999999999865544433321 11133456899999876 445555433 35555
Q ss_pred ECCC--CceEEEeecCCceeEEEEeecCCEEEEEe--CCCeEEEEEcCCCe
Q 005656 280 DFKG--RDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALR 326 (685)
Q Consensus 280 d~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~I~i~d~~~~~ 326 (685)
-... ..+...-.+...|....|+++.+.+..++ ..+++.=+.++++.
T Consensus 138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred EEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 5432 22222223446788889999888443333 34444444444443
No 446
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.08 E-value=3.8 Score=37.84 Aligned_cols=137 Identities=11% Similarity=0.152 Sum_probs=82.9
Q ss_pred CEEEEEecCCcEEEEECCC--CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC------eEEEE---ECC-
Q 005656 215 NFAVLGTAGGWIERFNLQS--GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG------DIKVW---DFK- 282 (685)
Q Consensus 215 ~~l~~g~~dg~i~~~d~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg------~i~iw---d~~- 282 (685)
+.++++...+.|.+|++.. ...+..| .--+.|..+.++..|++++|--.+. .+|+| +..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F---------~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF---------STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE---------cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 5666668888999999983 2334444 4458899999999999999875322 45554 222
Q ss_pred -CCceE-----------------------EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee-EE-----EEe
Q 005656 283 -GRDLK-----------------------SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VR-----KFE 332 (685)
Q Consensus 283 -~~~~~-----------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-~~-----~~~ 332 (685)
...++ -.++...++.+++..|-..-|++|+. +++.+|.+..... .. .|.
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFE 178 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEech
Confidence 11111 11222356788888887777777764 5788887765433 11 111
Q ss_pred ----c-CCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 333 ----G-HTD-RITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 333 ----~-h~~-~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
. |.+ .+..+++ -+.|+|..+ +-.++++.+
T Consensus 179 ~~l~~~~~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 179 RSLIDHIDNFKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hhhhheecCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 1 111 2455556 456787776 445777654
No 447
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.97 E-value=4 Score=41.50 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=87.7
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCe------EEEEECCC--C--ce---EEEe--e-cCC--------ceeEEEEeecCC
Q 005656 251 HNGEVVGVACDSTNTLMISAGYHGD------IKVWDFKG--R--DL---KSRW--E-VGC--------SLVKIVYHRVNG 306 (685)
Q Consensus 251 h~~~v~~l~~~~~~~~l~s~s~dg~------i~iwd~~~--~--~~---~~~~--~-~~~--------~i~~~~~~~~~~ 306 (685)
.-+.++++.+.+++..+++.+.+|. +..+++.. + .. .... . ..+ ....+++.++|.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3467889999976666777777777 66666543 1 00 1111 1 111 334678877787
Q ss_pred EEEEEeCC------CeEEEEEcCCCeeEEEEe---------------cCCCCeEEEEEcCCCCEEEEEeC-----CC--c
Q 005656 307 LLATVADD------LVIRLFDVVALRMVRKFE---------------GHTDRITDFCFSEDGKWLLSSGM-----DG--S 358 (685)
Q Consensus 307 ~l~~~~~d------g~I~i~d~~~~~~~~~~~---------------~h~~~I~~l~~spdg~~l~s~s~-----Dg--~ 358 (685)
++++.-.+ ..|+.++.. |+....+. ..+...-+|+++|||+.|+++.. |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 77777667 789889876 66555442 12345789999999996665532 22 1
Q ss_pred -------EEEEEc--CC-CceeeEE--ee--------ccceEEEEEcCCCCeEEEE
Q 005656 359 -------LRIWDV--IL-ARQIDAI--HV--------DVSITALSLSPNMDVLATA 394 (685)
Q Consensus 359 -------I~iwd~--~~-~~~i~~~--~~--------~~~v~~v~~spdg~~Lat~ 394 (685)
++++.. .+ +.....+ .. ...++.+.+-+++++|+.=
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 555544 43 3233333 22 2338889999998876654
No 448
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.94 E-value=8.4 Score=39.41 Aligned_cols=121 Identities=20% Similarity=0.310 Sum_probs=78.6
Q ss_pred cCEEEEEE--cC-CCC-EEEEEECCCeEEEEECC---CC----ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656 253 GEVVGVAC--DS-TNT-LMISAGYHGDIKVWDFK---GR----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 253 ~~v~~l~~--~~-~~~-~l~s~s~dg~i~iwd~~---~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
..+.++|+ ++ +|. +++..+.+|.+..|-+. .+ ++++.+...+.+..|........|+++-.+.-|.-|+
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~ 235 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYD 235 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccEEEEEe
Confidence 34677776 33 344 56667788988888764 33 4678888889999999999999999999999999898
Q ss_pred cCC-----CeeEEEEec--CCCCeEEEEEcC--CCC-EEEEEe-CCCcEEEEEcCC-CceeeEE
Q 005656 322 VVA-----LRMVRKFEG--HTDRITDFCFSE--DGK-WLLSSG-MDGSLRIWDVIL-ARQIDAI 373 (685)
Q Consensus 322 ~~~-----~~~~~~~~~--h~~~I~~l~~sp--dg~-~l~s~s-~Dg~I~iwd~~~-~~~i~~~ 373 (685)
.+. ++.+....+ ....|-.|++-. +++ ||+.++ .+++..||+... ...+..|
T Consensus 236 Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 236 AEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp SSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred cCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 762 233333332 345688887743 443 665555 678899999875 3444444
No 449
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.89 E-value=6.2 Score=37.70 Aligned_cols=191 Identities=13% Similarity=0.068 Sum_probs=121.9
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
......++..|||..-+.+...|.|--.|..+|+....-. +....-..|...|++..-++-+.. -|.-.|-
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL--------g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dp 131 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL--------GSGASPHGIVVGPDGSAWITDTGL-AIGRLDP 131 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEec--------CCCCCCceEEECCCCCeeEecCcc-eeEEecC
Confidence 4556778889999988998888889899999887755432 455566788889998866654433 4555565
Q ss_pred CCCceEE-Eee---cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEeCC
Q 005656 282 KGRDLKS-RWE---VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGMD 356 (685)
Q Consensus 282 ~~~~~~~-~~~---~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s~D 356 (685)
++....+ .+. .........|.+.|++-+++... .---.|.. ...++.|... ....+.|+..|||..-++.-.+
T Consensus 132 kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 132 KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred cccceEEeecccccCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccc
Confidence 5544332 111 12677888999999988887532 11111111 1223334322 2346788999999977776666
Q ss_pred CcEEEEEcCCCceeeEEee----ccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 357 GSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 357 g~I~iwd~~~~~~i~~~~~----~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
..|-..|-.++. -..+.. +.....+.-+|.|..-++....+ .++-++
T Consensus 210 naiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g-~l~rfd 260 (353)
T COG4257 210 NAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTG-SLHRFD 260 (353)
T ss_pred cceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCc-eeeEeC
Confidence 777777777663 233322 22356666778888877766555 677665
No 450
>PHA02790 Kelch-like protein; Provisional
Probab=93.76 E-value=3.2 Score=44.82 Aligned_cols=143 Identities=10% Similarity=-0.057 Sum_probs=69.0
Q ss_pred cCCCEEEEEecC--CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC---eEEEEECCCCce
Q 005656 212 ACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIKVWDFKGRDL 286 (685)
Q Consensus 212 ~~g~~l~~g~~d--g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~ 286 (685)
-+|...++|+.+ ..+..||..++.....-. ...... ....+. -+|+..+.||.++ .+..||..+.+-
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~-----l~~~r~-~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS-----LLKPRC-NPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCC-----CCCCCc-ccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 356666777653 357888876654332111 000111 111222 2566677777543 467888776544
Q ss_pred EEEeecCCce-eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE--EEEecCCCCeEEEEEcCCCCEEEEEeCC-----Cc
Q 005656 287 KSRWEVGCSL-VKIVYHRVNGLLATVADDLVIRLFDVVALRMV--RKFEGHTDRITDFCFSEDGKWLLSSGMD-----GS 358 (685)
Q Consensus 287 ~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~--~~~~~h~~~I~~l~~spdg~~l~s~s~D-----g~ 358 (685)
...-....+. ...+..-++.+.++| |.+.+||..+.+-. ..+.........+.+ +|+..+.||.+ .+
T Consensus 389 ~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ 463 (480)
T PHA02790 389 QFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDT 463 (480)
T ss_pred EeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccce
Confidence 3321111111 112223456666666 45778888765322 222211122222233 67777777754 23
Q ss_pred EEEEEcCCC
Q 005656 359 LRIWDVILA 367 (685)
Q Consensus 359 I~iwd~~~~ 367 (685)
|.+||..++
T Consensus 464 ve~Yd~~~~ 472 (480)
T PHA02790 464 IEVYNNRTY 472 (480)
T ss_pred EEEEECCCC
Confidence 555555443
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.73 E-value=2.7 Score=38.81 Aligned_cols=103 Identities=14% Similarity=0.224 Sum_probs=66.6
Q ss_pred CEEEEEeCCCeEEEEEcC--CCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---C---cEEEE---EcC--CCce---
Q 005656 306 GLLATVADDLVIRLFDVV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---G---SLRIW---DVI--LARQ--- 369 (685)
Q Consensus 306 ~~l~~~~~dg~I~i~d~~--~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---g---~I~iw---d~~--~~~~--- 369 (685)
..|.++...+.|.+|++. ..+...+|..- +.|..+.++..|+||+|--.+ . .+|+| +.. ...+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455455667889999988 34666777644 789999999999999986422 2 56665 211 1111
Q ss_pred ------------------eeEEe--eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCcC
Q 005656 370 ------------------IDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS 411 (685)
Q Consensus 370 ------------------i~~~~--~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~~ 411 (685)
+..+. ...++.+++..|-..-|++|+.+ .+.+|..+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~--~l~lf~l~~~~~ 167 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN--KLVLFTLKYQTI 167 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC--EEEEEEEEEEEE
Confidence 12222 23458889888865556666544 899998765443
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.32 E-value=4.5 Score=41.93 Aligned_cols=146 Identities=15% Similarity=0.210 Sum_probs=93.2
Q ss_pred CCCCEEE-EEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCC-------EEEEEeCCCeEEEEEcCC-CeeEEEEe
Q 005656 262 STNTLMI-SAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-------LLATVADDLVIRLFDVVA-LRMVRKFE 332 (685)
Q Consensus 262 ~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~I~i~d~~~-~~~~~~~~ 332 (685)
.+..+|+ .++....++-.|+..|+.+..+..+..+ -+.|.|..+ .-++|-.+..|.-.|.+- |..+..-.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 3444444 4445567888899999999999988777 677887542 233455566665556542 32222211
Q ss_pred cCCCCeEEEEEcC----CCCEEEEEeCCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 333 GHTDRITDFCFSE----DGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 333 ~h~~~I~~l~~sp----dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
....++.-.||. ...|+|.||..|.|++||.-.-+....+. ....|..+..+.+|+++++++.. .+-+-+.+
T Consensus 556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~--yllL~d~~ 632 (776)
T COG5167 556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN--YLLLTDVP 632 (776)
T ss_pred -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc--eEEEEecc
Confidence 122233333333 34599999999999999965443333333 34458899999999999998866 77777766
Q ss_pred CCcC
Q 005656 408 CMFS 411 (685)
Q Consensus 408 ~~~~ 411 (685)
--+.
T Consensus 633 ik~g 636 (776)
T COG5167 633 IKYG 636 (776)
T ss_pred cccC
Confidence 5443
No 453
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.32 E-value=15 Score=40.34 Aligned_cols=150 Identities=17% Similarity=0.256 Sum_probs=83.0
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE--EeecCCceeEE---EEee-----c-CCEEEEEeC-C---C
Q 005656 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEVGCSLVKI---VYHR-----V-NGLLATVAD-D---L 315 (685)
Q Consensus 251 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~i~~~---~~~~-----~-~~~l~~~~~-d---g 315 (685)
-...|.++.+.++++.+++.-.+|.|.+||+..+.... .......+ .+ .|-+ + ..++++.+. + -
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~-~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSI-NVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccc-ceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 35789999999999999999999999999993322211 11111110 11 1111 1 234444333 2 2
Q ss_pred eEEEEEc-CCCeeEEEEe---cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-------eEEEE
Q 005656 316 VIRLFDV-VALRMVRKFE---GHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-------ITALS 383 (685)
Q Consensus 316 ~I~i~d~-~~~~~~~~~~---~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-------v~~v~ 383 (685)
..+++.+ .....+..+. .+........|.. +|....- .+++|.+|+++..+...++..+.- +.++.
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 5677777 1222222332 2222233334433 4543333 678999999999988888876522 33333
Q ss_pred EcCCCCeEEEEEeCCCeEEEEEc
Q 005656 384 LSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 384 ~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
- |..+.+..+. + +.|++.+.
T Consensus 285 ~-~s~nRvLLs~-~-nkIyLld~ 304 (670)
T PF10395_consen 285 P-PSPNRVLLSV-N-NKIYLLDL 304 (670)
T ss_pred c-CCCCeEEEEc-C-CEEEEEee
Confidence 2 3333444443 2 38999874
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.27 E-value=4.6 Score=34.20 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=73.6
Q ss_pred EEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-----CCCEEEEEECCCeEEEEECCC
Q 005656 209 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TNTLMISAGYHGDIKVWDFKG 283 (685)
Q Consensus 209 ~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~s~dg~i~iwd~~~ 283 (685)
.|......|++++..|.|.+++............ .......-...|++++-.+ ....|+.|+ ...+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~-~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQD-SDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCcccccccccc-CceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 3444556788999999999998875543221100 0001114456788886544 234566555 57899999988
Q ss_pred CceEEEeecCCceeEEEEeecC---CEEEEEeCCCeEEEEEcCCCeeEEEE
Q 005656 284 RDLKSRWEVGCSLVKIVYHRVN---GLLATVADDLVIRLFDVVALRMVRKF 331 (685)
Q Consensus 284 ~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~I~i~d~~~~~~~~~~ 331 (685)
..-+...+.+..+.++.+-.-+ .-++..+.+..|.-||....+...+.
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 7666555566777777764322 34555555677887877665554443
No 455
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.26 E-value=2.9 Score=46.96 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=22.8
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656 200 ENPTAVKACTISACGNFAVLGTAGGWIER 228 (685)
Q Consensus 200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~ 228 (685)
.....|..+.++++|.+++..+..|.+.+
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 34457999999999999999888774443
No 456
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.25 E-value=11 Score=38.39 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=93.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCc------EEEEECCCCc-cccccccccccccCCCC--------cCEEEEEEcCCCCE
Q 005656 202 PTAVKACTISACGNFAVLGTAGGW------IERFNLQSGI-SRGSYLDMSERSNYAHN--------GEVVGVACDSTNTL 266 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~------i~~~d~~~~~-~~~~~~~~~~~~~~~h~--------~~v~~l~~~~~~~~ 266 (685)
-+.+..+.+.+++..+++-+.+|. ++.+++.... ................. -..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456788999976666777777777 7666665411 11111000000000111 13447788778888
Q ss_pred EEEEECC------CeEEEEECCCCceEEEe----------------ecCCceeEEEEeecCCEEEEEeC-----CC--e-
Q 005656 267 MISAGYH------GDIKVWDFKGRDLKSRW----------------EVGCSLVKIVYHRVNGLLATVAD-----DL--V- 316 (685)
Q Consensus 267 l~s~s~d------g~i~iwd~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~~-----dg--~- 316 (685)
+++.-.+ ..|+.++.. |+....+ ..+.....++++|+|+.|+++.+ |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7777666 778888876 5544333 12356789999999996666543 22 1
Q ss_pred ------EEE--EEcCC-CeeEEEE----ec-----CCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEEcC
Q 005656 317 ------IRL--FDVVA-LRMVRKF----EG-----HTDRITDFCFSEDGKWLLSS-----GMDGSLRIWDVI 365 (685)
Q Consensus 317 ------I~i--~d~~~-~~~~~~~----~~-----h~~~I~~l~~spdg~~l~s~-----s~Dg~I~iwd~~ 365 (685)
+++ ||..+ ++....+ .. ....|+.+.+-+++++|+.= +....++|+.+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 55554 3233322 22 35679999999999977632 123456666443
No 457
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.07 E-value=0.42 Score=31.25 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=27.1
Q ss_pred CcEEEEEEccCCC--CEEEEEeCCCcEEEEeCCC
Q 005656 3 GAVTALAFSSDGQ--PLLASGASSGVISIWNLEK 34 (685)
Q Consensus 3 ~~V~~l~fspdg~--~~latg~~dg~I~vwd~~~ 34 (685)
|.|.++.|||+.. .+||.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 6799999997543 4899888889999999985
No 458
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.73 E-value=4.2 Score=44.08 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=46.1
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 74 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd 74 (685)
-++++.-+|.|+ -++.|..||+|++|++...+.-.... -..+-..+.|...| |+++..|..+--|.
T Consensus 16 ~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qski~~--~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQSKICE--EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred eeeeeeecCCCc-eEEEEecCCcEEEEeecccchhhhhh--hcCCccceeeeccc--eEEEeccchhheee
Confidence 467888889888 88999999999999987765533222 22344556666544 55666677777774
No 459
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.20 E-value=0.77 Score=43.42 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=48.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceeeEE-------e--------eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 343 FSEDGKWLLSSGMDGSLRIWDVILARQIDAI-------H--------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 343 ~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~-------~--------~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
+..++.+|++.+.+|.+++||+.+++.+..- . ....|..+.++.+|.-+++-+ +| ..|.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng-~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG-DSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC-CEEEeccc
Confidence 4457889999999999999999988765332 1 223389999999998888776 44 68998743
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.02 E-value=0.94 Score=42.81 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=48.5
Q ss_pred EEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccC------CCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 208 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY------AHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 208 ~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
+.+..+++++++-+.+|.+++||+.+++....-......... .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 335668999999999999999999998765443111110100 3456677777777776666554 466677765
Q ss_pred C
Q 005656 282 K 282 (685)
Q Consensus 282 ~ 282 (685)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 4
No 461
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=91.86 E-value=15 Score=36.80 Aligned_cols=63 Identities=16% Similarity=0.322 Sum_probs=43.2
Q ss_pred ccCCCCEEEEEeCCCcEEEEeCCC--CeeeEEeecccccCeeEEEEeCCCcEEEEec-CCCcEEEEEecCC
Q 005656 11 SSDGQPLLASGASSGVISIWNLEK--RRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTT 78 (685)
Q Consensus 11 spdg~~~latg~~dg~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~D~~v~iWd~~~~ 78 (685)
..+++ +|+.|+.+| +.+-++.. ++..+. .+...|+++...+..+.|++-+ ....++.+++..-
T Consensus 10 ~~~~~-~lL~GTe~G-ly~~~~~~~~~~~~kl---~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 10 TCDGK-WLLVGTEEG-LYVLNISDQPGTLEKL---IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred ccCCc-EEEEEeCCc-eEEEEcccCCCCeEEe---cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence 33444 899999999 55666654 333333 4677999999999888776654 3345999988543
No 462
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=13 Score=36.00 Aligned_cols=275 Identities=11% Similarity=0.116 Sum_probs=143.5
Q ss_pred ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656 46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~ 125 (685)
.+-+..+.++ +++...+..+.-++|.|+.+.+. ++++..+.- .+--.+ |.-.|++...+..|.-+.+.|+.+.+
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~s-P~~~~~lnt-~gyayg--v~vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDS-PTLIGFLNT-DGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCC-cceeccccC-CceEEE--EEecCCEEEEeeccCcEEEEECCCCC
Confidence 3455666666 45666677778899999988753 233333321 122233 33457788888866667788886654
Q ss_pred eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656 126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 205 (685)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 205 (685)
........ . ......
T Consensus 160 sP~lagry------------------------------------------------------------a-----~~~~d~ 174 (370)
T COG5276 160 SPQLAGRY------------------------------------------------------------A-----LPGGDT 174 (370)
T ss_pred Cceeeeee------------------------------------------------------------c-----cCCCCc
Confidence 32211100 0 111112
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 005656 206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 285 (685)
Q Consensus 206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (685)
..+++| |++..++..++-+.+.|+........... ......+.++..+++..+++.. +--+.+-|..+.+
T Consensus 175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~------~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGS------YNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred eeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEE------EecCCceEEEEecCCeeEEEEc--ccceEEEecCCCC
Confidence 334443 78888888899999999876544322210 0122367788877765555443 3456777776655
Q ss_pred eEEEe---ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656 286 LKSRW---EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM---VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL 359 (685)
Q Consensus 286 ~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I 359 (685)
....+ +...++..-.+.-.+++..++..+.-+.+.|+.+..- ...+......-..+..+ +.++..+..+ +.
T Consensus 245 sp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g 321 (370)
T COG5276 245 SPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TG 321 (370)
T ss_pred CceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ce
Confidence 33333 3333322223344467777777777777777765321 11111111122223332 3344444333 33
Q ss_pred EEEEcCCCceeeEEee-ccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 360 RIWDVILARQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 360 ~iwd~~~~~~i~~~~~-~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
.+-+...-+....... ...+.+.+.+-+.+++.++..++ ++.+|+
T Consensus 322 ~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~-gl~i~~ 367 (370)
T COG5276 322 AVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNG-GLSIIE 367 (370)
T ss_pred EEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCC-CEEEEE
Confidence 3444433222221111 11144455555666778887776 788886
No 463
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.66 E-value=0.26 Score=54.01 Aligned_cols=179 Identities=16% Similarity=0.276 Sum_probs=96.6
Q ss_pred CceEEEEEcCc--cccCce-eecCCCCCCCCeEEEEE---ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCC
Q 005656 177 TAQAYVWRLQN--FVLGEH-ILRPCPENPTAVKACTI---SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 250 (685)
Q Consensus 177 ~~~~~~w~~~~--~~~~~~-~~~~~~~~~~~v~~~~~---s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 250 (685)
-+...+|++.- +.+... .+.+.......+.-+.| -++.-++.++..+|.+++.++..... ..+ .+
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~--------rs 222 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLF--------RS 222 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHH--------Hh
Confidence 35667777653 222222 22222233333344444 44677888899999999988765443 111 15
Q ss_pred CCcCEEEEE-----------EcCCCCEEEEEECCCeEEEEECC-CC----ceEEEeecC--CceeEEEEeecC-------
Q 005656 251 HNGEVVGVA-----------CDSTNTLMISAGYHGDIKVWDFK-GR----DLKSRWEVG--CSLVKIVYHRVN------- 305 (685)
Q Consensus 251 h~~~v~~l~-----------~~~~~~~l~s~s~dg~i~iwd~~-~~----~~~~~~~~~--~~i~~~~~~~~~------- 305 (685)
|...++.++ .+|||+.+++++.||.+++|-+. ++ .+...+..+ ++-.|..++.+.
T Consensus 223 Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~ 302 (1283)
T KOG1916|consen 223 HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIG 302 (1283)
T ss_pred cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccc
Confidence 665555443 58999999999999999888764 22 333444433 333333333221
Q ss_pred C--EEEEEeC-CCeEEEEEcCCCeeEEE--------EecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 005656 306 G--LLATVAD-DLVIRLFDVVALRMVRK--------FEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 306 ~--~l~~~~~-dg~I~i~d~~~~~~~~~--------~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~ 364 (685)
. +++++++ +..+++|.....+|+.. ...|.+.|+.+.... --..+++-+-|++|.+|.=
T Consensus 303 ~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 303 KWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred eeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 1 3334433 45788888777766511 112333333221100 0012344567888888853
No 464
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.49 E-value=21 Score=37.75 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=43.1
Q ss_pred eeEEEEee---------cCCEEEEEeCCCeEEEEEcCCCe--e----EEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 005656 296 LVKIVYHR---------VNGLLATVADDLVIRLFDVVALR--M----VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSL 359 (685)
Q Consensus 296 i~~~~~~~---------~~~~l~~~~~dg~I~i~d~~~~~--~----~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I 359 (685)
...++|-. ++.+|+.+-..+.|....+.... . ...+.. .++|.++..+||| .+.+..+..|.+
T Consensus 351 psg~~~y~~~g~~~p~w~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~ 429 (454)
T TIGR03606 351 PSSAYYYKGGEKGITGWENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNV 429 (454)
T ss_pred CceeEEEecCcccCcccCCCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCcc
Confidence 44566665 36788888888888888886442 2 223443 6799999999997 544445566654
Q ss_pred E
Q 005656 360 R 360 (685)
Q Consensus 360 ~ 360 (685)
.
T Consensus 430 ~ 430 (454)
T TIGR03606 430 Q 430 (454)
T ss_pred c
Confidence 3
No 465
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.14 E-value=1.6 Score=44.42 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=95.7
Q ss_pred CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE-eec---C---Ccee-EEEEeecCCEEEEEeCCCeEEEE-
Q 005656 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-WEV---G---CSLV-KIVYHRVNGLLATVADDLVIRLF- 320 (685)
Q Consensus 250 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~---~---~~i~-~~~~~~~~~~l~~~~~dg~I~i~- 320 (685)
.....|..+-..|+|+.+..-+. .++.++++.+...... +-. + +.++ .+..-..|.-+.+++.||.|.-|
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 34466778889999998877664 7888888876543221 111 1 1122 11122345577888889988776
Q ss_pred EcCCC-----eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEE
Q 005656 321 DVVAL-----RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH 395 (685)
Q Consensus 321 d~~~~-----~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~ 395 (685)
|++.+ ..++.++-....+..+.--.+.+-+++-+..|++.++.....+.+-.-..-..+.-+++||.+.+|++-
T Consensus 297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e- 375 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE- 375 (733)
T ss_pred eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheee-
Confidence 44332 223333322334443333334456777788899888876555444333333357788999999999886
Q ss_pred eCCCeEEEEEcCCCc
Q 005656 396 VDQNGVYLWVNRCMF 410 (685)
Q Consensus 396 ~d~~~I~lW~~~~~~ 410 (685)
|++.|+++.....+
T Consensus 376 -~~gki~~~~l~Nr~ 389 (733)
T COG4590 376 -DQGKIRLAQLENRN 389 (733)
T ss_pred -cCCceEEEEecCCC
Confidence 55589988755443
No 466
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.07 E-value=22 Score=37.12 Aligned_cols=146 Identities=8% Similarity=-0.015 Sum_probs=83.0
Q ss_pred cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe-----
Q 005656 253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR----- 326 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~----- 326 (685)
+....+..++++.+++.+.....++-||--... ..........+..+.+.+++.+++++ .+|.+. +....++
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 345556677888766666543333334422111 12233345678899999998887766 445543 3334443
Q ss_pred eEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe----eccceEEEEEcCCCCeEEEEEeCCCe
Q 005656 327 MVRKFEG--HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH----VDVSITALSLSPNMDVLATAHVDQNG 400 (685)
Q Consensus 327 ~~~~~~~--h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~----~~~~v~~v~~spdg~~Lat~~~d~~~ 400 (685)
....... -...++++.|.+++..++ ++..|.+.... ..|+.-.... ...+...+.|.++++..+++. +| .
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G-~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DG-V 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-Cc-E
Confidence 1222221 123489999998877555 45678666553 4555433332 234588999988877777763 43 4
Q ss_pred EEEE
Q 005656 401 VYLW 404 (685)
Q Consensus 401 I~lW 404 (685)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 4433
No 467
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.90 E-value=1.1 Score=29.29 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=31.7
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCCCceeeEEeeccceEEEEEc
Q 005656 345 EDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVSITALSLS 385 (685)
Q Consensus 345 pdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~s 385 (685)
|++++|+++. .+++|.++|..+++.+..+........++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 6788777655 5789999999999998888876556666654
No 468
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.87 E-value=25 Score=37.45 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=66.6
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 005656 294 CSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 371 (685)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~ 371 (685)
..|+..++..++ .+-.|+...-+..|+..+ +.......+ ..++|..+.=.|+++ |..|+.+|.++. +.+.++...
T Consensus 376 ~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n 452 (671)
T COG3292 376 MNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLN 452 (671)
T ss_pred cccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhc
Confidence 456666666644 455555554455666665 333333332 356788888889988 777888885543 334444433
Q ss_pred EEee------ccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCC
Q 005656 372 AIHV------DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM 409 (685)
Q Consensus 372 ~~~~------~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~ 409 (685)
.+.. .+.+..+.+.|+|+.-+.++ + +|..|+.+..
T Consensus 453 ~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~--gva~~~sq~~ 493 (671)
T COG3292 453 LLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-S--GVAAWESQRR 493 (671)
T ss_pred ccccccCcCCcchhhhhccCCCCceEEEec-c--eeeeeccccc
Confidence 3332 22377889999998655543 3 6899986654
No 469
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.86 E-value=2.9 Score=43.27 Aligned_cols=142 Identities=16% Similarity=0.138 Sum_probs=86.8
Q ss_pred cCCCEEE-EEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC--------CEEEEEECCCeEEEEECC
Q 005656 212 ACGNFAV-LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--------TLMISAGYHGDIKVWDFK 282 (685)
Q Consensus 212 ~~g~~l~-~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--------~~l~s~s~dg~i~iwd~~ 282 (685)
.+.+.++ .|.....++-.|+..|+.+.... -|.. | -+.+.|.. +.|+ |-.+..|.-.|.+
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~--------~~dd-v-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR 545 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWD--------LKDD-V-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPR 545 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEee--------cCCc-c-eeecCCchhHHhcCccceEE-eecccceEEeccc
Confidence 3444443 34455678888888888776653 3333 2 56666643 2333 4345555555544
Q ss_pred -CCceEEEeecCCceeEEEE----eecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656 283 -GRDLKSRWEVGCSLVKIVY----HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 283 -~~~~~~~~~~~~~i~~~~~----~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg 357 (685)
.|..+.......-.+.-.| ...+.++|+|+..|.|++||--..+.-..+.+-...|..+..+.+|+++++.+. .
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~ 624 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-N 624 (776)
T ss_pred ccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-c
Confidence 2322222222222222222 234679999999999999997655555566777888999999999999887764 4
Q ss_pred cEEEEEcC
Q 005656 358 SLRIWDVI 365 (685)
Q Consensus 358 ~I~iwd~~ 365 (685)
.+.+-|++
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 67777764
No 470
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.79 E-value=25 Score=37.26 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=59.9
Q ss_pred cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE--EEe----e--cCCceeEEEEeecC------CEEEEEe------
Q 005656 253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRW----E--VGCSLVKIVYHRVN------GLLATVA------ 312 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~----~--~~~~i~~~~~~~~~------~~l~~~~------ 312 (685)
...+.|+|.|+++++++--..|.|++++-.++... ..+ . .......++++|+- ++|++..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 45678999999987776655699999986554321 111 1 23667899999874 3444442
Q ss_pred ----CCCeEEEEEcCCC-------ee-EEEEe---cCCCCeEEEEEcCCCCEEEEEeCC
Q 005656 313 ----DDLVIRLFDVVAL-------RM-VRKFE---GHTDRITDFCFSEDGKWLLSSGMD 356 (685)
Q Consensus 313 ----~dg~I~i~d~~~~-------~~-~~~~~---~h~~~I~~l~~spdg~~l~s~s~D 356 (685)
....|.-|.+... +. +..+. .|. -..|+|.|||.+.++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 1234544554311 11 11111 233 3467899999876655543
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=41 Score=39.69 Aligned_cols=77 Identities=12% Similarity=0.233 Sum_probs=52.1
Q ss_pred ccCeeEEEEeCCCcEEEEecCCCcEEEEEec--CCCC-------------------CCceeEecccCCCCCeEEEEecCC
Q 005656 46 DNAIISLHFFANEPVLMSASADNSIKMWIFD--TTDG-------------------DPRLLRFRSGHSAPPLCIRFYANG 104 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~--~~~~-------------------~~~~~~~~~~h~~~v~~i~~~~~~ 104 (685)
.-.|+|+....+|+.+++| .|| .+|.+. ..++ .+..+.....+..+|..+.....-
T Consensus 178 g~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 3457888877788777766 455 455442 2111 011222223677899999998777
Q ss_pred CEEEEEeCCCceEEEEeecCc
Q 005656 105 RHILSAGQDRAFRLFSVIQDQ 125 (685)
Q Consensus 105 ~~l~s~s~dg~i~vwd~~~~~ 125 (685)
..+.+-+..|+|++|++..+.
T Consensus 255 ~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ceeeeeccCceEEEEEccCCC
Confidence 788889999999999998743
No 472
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.22 E-value=32 Score=40.68 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=43.5
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee
Q 005656 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 327 (685)
Q Consensus 251 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~ 327 (685)
+...+.+..+...+.. ..+..-+.+-+|+.........+...+... ++++..++++..||.+..||...++.
T Consensus 197 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCc-ceeeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCCce
Confidence 4444555554444332 333345667777765544333333221111 77888999999999999999998755
No 473
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.07 E-value=1.5 Score=28.79 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCC
Q 005656 336 DRITDFCFSEDG---KWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 336 ~~I~~l~~spdg---~~l~s~s~Dg~I~iwd~~~ 366 (685)
+.|.++.|||.. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999844 4888888889999999985
No 474
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.51 E-value=8 Score=42.87 Aligned_cols=115 Identities=10% Similarity=0.142 Sum_probs=77.9
Q ss_pred EEEEEEccC-CCCEEEEEeCCCcEEEEeCCC-------C----e---------eeEEeecccccCeeEEEEe--CCCcEE
Q 005656 5 VTALAFSSD-GQPLLASGASSGVISIWNLEK-------R----R---------LQSVIREAHDNAIISLHFF--ANEPVL 61 (685)
Q Consensus 5 V~~l~fspd-g~~~latg~~dg~I~vwd~~~-------~----~---------~~~~~~~~h~~~V~~l~~s--p~~~~l 61 (685)
|+.|....= |..+|+.+..||.|.+|.+++ . . +...+ .-...+.+++++ ...++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcceEE
Confidence 455544432 234889999999999996531 0 0 11112 234578999998 778899
Q ss_pred EEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC---C---EEEEEeCCCceEEEEee
Q 005656 62 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG---R---HILSAGQDRAFRLFSVI 122 (685)
Q Consensus 62 ~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~---~---~l~s~s~dg~i~vwd~~ 122 (685)
|.++....|.||-+...+....... -..|...|-+|+|.++. . .+++++-.|.+.+|++.
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecCCceEEEEEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 9998889999998776422211111 12367789999998752 2 67788889999999883
No 475
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.22 E-value=30 Score=35.95 Aligned_cols=15 Identities=0% Similarity=-0.004 Sum_probs=10.8
Q ss_pred CcEEEEECCCCcccc
Q 005656 224 GWIERFNLQSGISRG 238 (685)
Q Consensus 224 g~i~~~d~~~~~~~~ 238 (685)
..+.+||..+.....
T Consensus 189 ~~v~~YD~~t~~W~~ 203 (376)
T PRK14131 189 KEVLSYDPSTNQWKN 203 (376)
T ss_pred ceEEEEECCCCeeeE
Confidence 358899988876543
No 476
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.94 E-value=0.054 Score=55.09 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=99.1
Q ss_pred CCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEE-EEEeCCCeEEEEEcCCCeeE
Q 005656 250 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL-ATVADDLVIRLFDVVALRMV 328 (685)
Q Consensus 250 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~I~i~d~~~~~~~ 328 (685)
.+-.......|-+.+.-++.++.+..+..||-. ++.......++....++|..++..+ +.+-..+.+++||+.+...-
T Consensus 32 aalv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 32 AALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred hhccccceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 344445566777877778888888889999854 4555555666777888898888744 44556789999999764321
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEE
Q 005656 329 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLA 392 (685)
Q Consensus 329 ~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~La 392 (685)
..-.+.+..-.-+.|++.+..++.+-..|.+.|++-.+.+.+-... +...+++++|.+.+..+.
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 1111111122227899999999999999999999988877766554 455599999988765443
No 477
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=88.88 E-value=39 Score=36.79 Aligned_cols=104 Identities=9% Similarity=0.064 Sum_probs=59.0
Q ss_pred EccCCCEEEEEecCCcEEEEECCCCcc--ccccccccccccCCC-CcCEEEEEEcCCC-CEEEEEE--CCCeEEEEECCC
Q 005656 210 ISACGNFAVLGTAGGWIERFNLQSGIS--RGSYLDMSERSNYAH-NGEVVGVACDSTN-TLMISAG--YHGDIKVWDFKG 283 (685)
Q Consensus 210 ~s~~g~~l~~g~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~h-~~~v~~l~~~~~~-~~l~s~s--~dg~i~iwd~~~ 283 (685)
...++..++.+..+|.++...+..... ..... +. ....+++++..++ .+++.|+ .|+.+..|....
T Consensus 218 ~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~--------g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~ 289 (504)
T PF10433_consen 218 YDKDGDRILLQDEDGDLYLLTLDNDGGSISITYL--------GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSN 289 (504)
T ss_dssp SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE--------EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESES
T ss_pred ecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc--------CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCC
Confidence 345678899999999999888765432 11111 22 3444566665554 3666776 455666666555
Q ss_pred CceEEEeecCCceeEEEEeec----CC------EEEEEe---CCCeEEEEE
Q 005656 284 RDLKSRWEVGCSLVKIVYHRV----NG------LLATVA---DDLVIRLFD 321 (685)
Q Consensus 284 ~~~~~~~~~~~~i~~~~~~~~----~~------~l~~~~---~dg~I~i~d 321 (685)
-+.+..+..-+|+..+++.+. .. .+++++ .+|.++++.
T Consensus 290 l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 290 LEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp EEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 566666776789999988642 11 444444 366787763
No 478
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.82 E-value=50 Score=37.99 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=48.2
Q ss_pred CcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC------CCEEEEEeCCCceEEEEeecCceeeEec
Q 005656 58 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN------GRHILSAGQDRAFRLFSVIQDQQSRELS 131 (685)
Q Consensus 58 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~------~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 131 (685)
...++.+-..|.+..+..+..+ ....+.....-...|.|+++.++ .++++.++.|++++++.+........++
T Consensus 549 r~qiVvalSngelvyfe~d~sg-ql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls 627 (1205)
T KOG1898|consen 549 RRQIVVALSNGELVYFEGDVSG-QLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLS 627 (1205)
T ss_pred ceEEEEEccCCeEEEEEeccCc-cceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcc
Confidence 3345555556666666555332 22222233445678899999876 3679999999999999998666666654
Q ss_pred h
Q 005656 132 Q 132 (685)
Q Consensus 132 ~ 132 (685)
.
T Consensus 628 ~ 628 (1205)
T KOG1898|consen 628 V 628 (1205)
T ss_pred c
Confidence 3
No 479
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.82 E-value=29 Score=35.18 Aligned_cols=95 Identities=16% Similarity=0.001 Sum_probs=45.6
Q ss_pred CCCEEEEEec-----CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC----eEEEEECCC
Q 005656 213 CGNFAVLGTA-----GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG----DIKVWDFKG 283 (685)
Q Consensus 213 ~g~~l~~g~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg----~i~iwd~~~ 283 (685)
+++..++|+. ...+..||+.+.+....-. . .........+...+++..+.|+.++ .+.+||..+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~------p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-F------PGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-C------CCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 4555566653 2468889988765433210 0 0001111122223566777777654 356788877
Q ss_pred CceEEEeec---CCce---eEE-EEeecCCEEEEEeCC
Q 005656 284 RDLKSRWEV---GCSL---VKI-VYHRVNGLLATVADD 314 (685)
Q Consensus 284 ~~~~~~~~~---~~~i---~~~-~~~~~~~~l~~~~~d 314 (685)
.+-...-.. ..+. ... ....++.+++.|+.+
T Consensus 196 ~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 196 NQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 653322111 1111 111 122356777777765
No 480
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=12 Score=39.19 Aligned_cols=29 Identities=17% Similarity=0.027 Sum_probs=23.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFN 230 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d 230 (685)
.-.|..+..++.|..++..+.+|.+.++=
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 44578889999999999999999776653
No 481
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=88.17 E-value=55 Score=37.62 Aligned_cols=77 Identities=13% Similarity=0.002 Sum_probs=53.7
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc----cccccc-------ccCCCCcCEEEEEEcCCCCEEEE
Q 005656 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY----LDMSER-------SNYAHNGEVVGVACDSTNTLMIS 269 (685)
Q Consensus 201 ~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~----~~~~~~-------~~~~h~~~v~~l~~~~~~~~l~s 269 (685)
....|.+++...-+.++++...||+|.++|-.+-+..... ...... -...+-..+..++|+|.+..++.
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 3567889999999999999999999999998876554433 111000 01112224556889999988888
Q ss_pred EECCCeEE
Q 005656 270 AGYHGDIK 277 (685)
Q Consensus 270 ~s~dg~i~ 277 (685)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888765
No 482
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.11 E-value=34 Score=35.09 Aligned_cols=219 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred eEEEEcCCceEEEEEcCccccCceeecCCC-CCCCCeEEEEEccCCCEEEEEecC-----------CcEEEEECCCCccc
Q 005656 170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCP-ENPTAVKACTISACGNFAVLGTAG-----------GWIERFNLQSGISR 237 (685)
Q Consensus 170 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~g~~d-----------g~i~~~d~~~~~~~ 237 (685)
.+..+.....+..++.......-..+.+.+ ........+.+ +++..++|+.+ ..+..||+.+..-.
T Consensus 21 yv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 21 YVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred EEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEE--CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Q ss_pred cccccccccccCCCCcCEEEEEEc--CCCCEEEEEECC---------------------------------------CeE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACD--STNTLMISAGYH---------------------------------------GDI 276 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~s~d---------------------------------------g~i 276 (685)
..-. .......+.+.. -+++..+.|+.+ ..+
T Consensus 99 ~~~~--------~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (346)
T TIGR03547 99 KLDT--------RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV 170 (346)
T ss_pred cCCC--------CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Q ss_pred EEEECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCC------CeEEEEEc--C--CCeeEEEEec-----CCCCeE
Q 005656 277 KVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD------LVIRLFDV--V--ALRMVRKFEG-----HTDRIT 339 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d------g~I~i~d~--~--~~~~~~~~~~-----h~~~I~ 339 (685)
.+||..+.+-...-..+ ..........++++++.|+.+ ..+..|++ . ....+..+.. |.+...
T Consensus 171 ~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~ 250 (346)
T TIGR03547 171 LSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAG 250 (346)
T ss_pred EEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccE
Q ss_pred EEEEcCCCCEEEEEeCC----------------------CcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEe
Q 005656 340 DFCFSEDGKWLLSSGMD----------------------GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHV 396 (685)
Q Consensus 340 ~l~~spdg~~l~s~s~D----------------------g~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~ 396 (685)
..+...++++.+.|+.+ ..+.+||..+.+-...-..+.+ -...+..-+++++++|+.
T Consensus 251 ~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 251 AFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGE 330 (346)
T ss_pred EeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEecc
Q ss_pred CC
Q 005656 397 DQ 398 (685)
Q Consensus 397 d~ 398 (685)
+.
T Consensus 331 ~~ 332 (346)
T TIGR03547 331 NS 332 (346)
T ss_pred CC
No 483
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.84 E-value=22 Score=32.67 Aligned_cols=162 Identities=10% Similarity=0.056 Sum_probs=93.0
Q ss_pred CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEE-EECCCeEEEEECCCCceEEEeecCCceeEEEE
Q 005656 223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS-AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 301 (685)
Q Consensus 223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~ 301 (685)
...|++||+.+|+...+..-.+ .......++. -+.++.. .=.+|.-..+|.++-+.+..+...+.-..++.
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~---~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~ 138 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAP---DTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTS 138 (262)
T ss_pred cceeEEEeccCceEEEEeecCC---ccccccceee-----ccceEEEEEeccceeEEEChHHhhhhcccccCCcceeeec
Confidence 3479999999988765542110 0011111111 1233332 23578888899988887777766655555443
Q ss_pred eecCCEEEEEeCCCeEEEEEcCCCeeEEEEe----c-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-
Q 005656 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFE----G-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV- 375 (685)
Q Consensus 302 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~----~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~- 375 (685)
|+..|..+....+++.-|.++-....+.. | .-..++.+.|- ||...|-.=.+..|..-+..+|+.+..+..
T Consensus 139 --d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS 215 (262)
T COG3823 139 --DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLS 215 (262)
T ss_pred --CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEcc
Confidence 45557776666677777776644333322 2 11234445553 565555544555566667777877776643
Q ss_pred -----------c-cceEEEEEcCCCCeEEEEE
Q 005656 376 -----------D-VSITALSLSPNMDVLATAH 395 (685)
Q Consensus 376 -----------~-~~v~~v~~spdg~~Lat~~ 395 (685)
+ .-.+.+++.|++..+..++
T Consensus 216 ~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 216 GLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCchhcCccccccccccceeecCcCCeEEEec
Confidence 1 1267889999885555443
No 484
>PLN02193 nitrile-specifier protein
Probab=87.75 E-value=44 Score=36.00 Aligned_cols=151 Identities=7% Similarity=-0.053 Sum_probs=74.5
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCcccccccccc-ccccCCCCcCEEEEEEcCCCCEEEEEECCC-----eEEEEEC
Q 005656 213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMS-ERSNYAHNGEVVGVACDSTNTLMISAGYHG-----DIKVWDF 281 (685)
Q Consensus 213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-----~i~iwd~ 281 (685)
++...+.|+.+ ..+..||+.+........... ......| +++. -++++++.|+.++ .+..||+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h-----~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~ 301 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH-----SMAA-DEENVYVFGGVSATARLKTLDSYNI 301 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce-----EEEE-ECCEEEEECCCCCCCCcceEEEEEC
Confidence 45666676654 368899998765543211000 0000112 2222 2456666676543 4677887
Q ss_pred CCCceEEEeec----CCceeEEEEeecCCEEEEEeCC----CeEEEEEcCCCeeEEEEec---CCCCeEEEEEcCCCCEE
Q 005656 282 KGRDLKSRWEV----GCSLVKIVYHRVNGLLATVADD----LVIRLFDVVALRMVRKFEG---HTDRITDFCFSEDGKWL 350 (685)
Q Consensus 282 ~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~~~~~~~~---h~~~I~~l~~spdg~~l 350 (685)
.+.+-...-.. .......+..-++++++.++.+ ..+.+||+.+.+-...-.. ........+..-+++++
T Consensus 302 ~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iy 381 (470)
T PLN02193 302 VDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIV 381 (470)
T ss_pred CCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEE
Confidence 76553321110 0011111122357777777655 4689999987654322110 11111111222366777
Q ss_pred EEEeCC--------------CcEEEEEcCCCce
Q 005656 351 LSSGMD--------------GSLRIWDVILARQ 369 (685)
Q Consensus 351 ~s~s~D--------------g~I~iwd~~~~~~ 369 (685)
+.|+.+ ..+.+||+.+.+-
T Consensus 382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 382 IFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred EECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 777743 2477888776543
No 485
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.65 E-value=0.059 Score=54.82 Aligned_cols=146 Identities=13% Similarity=0.152 Sum_probs=100.4
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeEEEEECCC
Q 005656 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWDFKG 283 (685)
Q Consensus 205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~ 283 (685)
.....|.+.+..+++++.+..+..||-..... ... ...+....++|+.++..++ .+-..+.+.+||+.+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~-le~---------n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVI-LEL---------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhccee-ccc---------CCchhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence 44556777777799999888888888543322 211 3445666788888876544 445678999999975
Q ss_pred CceEE-EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005656 284 RDLKS-RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 361 (685)
Q Consensus 284 ~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~i 361 (685)
..-.. .......-.-..|++....++.+...|.+.||+..+.+.+...-.|..++++++|.+.+ +.+.++.|..+.+
T Consensus 107 eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 107 EYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred hhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence 42211 11112222337788888899999999999999988777666555599999999999976 4666666655444
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.15 E-value=64 Score=37.25 Aligned_cols=122 Identities=9% Similarity=0.002 Sum_probs=74.5
Q ss_pred CCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccc--cc--c-cc-cc-ccCCCCcCEEEEEEcCCCCEEEEEEC
Q 005656 201 NPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGS--YL--D-MS-ER-SNYAHNGEVVGVACDSTNTLMISAGY 272 (685)
Q Consensus 201 ~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~--~~--~-~~-~~-~~~~h~~~v~~l~~~~~~~~l~s~s~ 272 (685)
...+...++|+| +...+++-...|...+|++..+..... +. . .. .. ........-..+.|.++...|+.++.
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 345678899998 556899999999999999932221111 10 0 00 00 00011234457888888777777764
Q ss_pred CCeEEEEECCCCceEE---EeecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCC
Q 005656 273 HGDIKVWDFKGRDLKS---RWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVA 324 (685)
Q Consensus 273 dg~i~iwd~~~~~~~~---~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~ 324 (685)
..+.++|+.+..... .-.....|..+.-+|... ++++- ....|..+|+..
T Consensus 224 -~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 224 -SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred -CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 678999998775533 222337788888888733 22222 236777778776
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.04 E-value=18 Score=30.75 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=69.5
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCC--------CceEEEeecCCceeEEEEeec-----CCEEEEEeCCCeEEEEEcCC
Q 005656 258 VACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVYHRV-----NGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 258 l~~~~~~~~l~s~s~dg~i~iwd~~~--------~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~I~i~d~~~ 324 (685)
-.|+.....|+.++.-|+|.|++... ...+..+.....|++++-.+- ...|++|+. ..+..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 34555556677888888999998663 335667777788888876652 347777765 5788999987
Q ss_pred CeeEEEEecCCCCeEEEEEcC----CCCEEEEEeCCCcEEEEEcCCCce
Q 005656 325 LRMVRKFEGHTDRITDFCFSE----DGKWLLSSGMDGSLRIWDVILARQ 369 (685)
Q Consensus 325 ~~~~~~~~~h~~~I~~l~~sp----dg~~l~s~s~Dg~I~iwd~~~~~~ 369 (685)
..-+..-. -...|+++.+-. +..+++.| .+..|.-||..-.+.
T Consensus 83 N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 83 NSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI 129 (136)
T ss_pred Cchhhhhh-CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence 65543222 235577776632 23344444 466777777654443
No 488
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=86.84 E-value=42 Score=34.87 Aligned_cols=21 Identities=5% Similarity=0.012 Sum_probs=12.0
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCC
Q 005656 13 DGQPLLASGA-SSGVISIWNLEK 34 (685)
Q Consensus 13 dg~~~latg~-~dg~I~vwd~~~ 34 (685)
++. +.+.|+ .+..+.++|+..
T Consensus 38 ~~~-iyv~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 38 NNT-VYVGLGSAGTSWYKLDLNA 59 (376)
T ss_pred CCE-EEEEeCCCCCeEEEEECCC
Confidence 455 444444 445577888763
No 489
>PLN02153 epithiospecifier protein
Probab=86.79 E-value=40 Score=34.50 Aligned_cols=151 Identities=8% Similarity=-0.008 Sum_probs=70.1
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----------CeE
Q 005656 213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----------GDI 276 (685)
Q Consensus 213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----------g~i 276 (685)
+++..+.|+.+ ..+.+||+.+..-...- ....... .....-.+++. -+++.++.|+.+ ..+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~-~~~~~~~-p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLT-KLDEEGG-PEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEec-cCCCCCC-CCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceE
Confidence 45666777643 35888998876543211 0000000 00001112222 345666776643 247
Q ss_pred EEEECCCCceEEEeecC----CceeEEEEeecCCEEEEEeCC-------------CeEEEEEcCCCeeEEEEe-c--C--
Q 005656 277 KVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADD-------------LVIRLFDVVALRMVRKFE-G--H-- 334 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d-------------g~I~i~d~~~~~~~~~~~-~--h-- 334 (685)
.+||..+.+-...-... .........-++++++.++.+ ..+.+||..+.+-...-. + .
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence 78888765433211111 111111122356666655432 468889988764322111 1 1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC--------------CcEEEEEcCCCc
Q 005656 335 TDRITDFCFSEDGKWLLSSGMD--------------GSLRIWDVILAR 368 (685)
Q Consensus 335 ~~~I~~l~~spdg~~l~s~s~D--------------g~I~iwd~~~~~ 368 (685)
......+.+ ++++++.|+.. ..|..+|..+.+
T Consensus 242 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 242 RSVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cceeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 111122222 56777777742 256777776543
No 490
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.74 E-value=41 Score=34.59 Aligned_cols=196 Identities=16% Similarity=0.246 Sum_probs=104.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEe----CCCcE--EEEec-CC---CcEEEEEecCCCCCCceeE
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF----ANEPV--LMSAS-AD---NSIKMWIFDTTDGDPRLLR 86 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s----p~~~~--l~s~s-~D---~~v~iWd~~~~~~~~~~~~ 86 (685)
+++....++-+.+||+..+... .+..+ .++.+..- -+|+. |+.++ .+ ++|++|.++...+ .+.
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq-~~~~G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~L~ 142 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQ-SLPVG---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---ELT 142 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEE-EE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---EEE
T ss_pred eEEEEeCCCCEEEEcCCCcEEE-eecCC---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---cce
Confidence 6666677888999999766554 44323 33333321 13432 33333 32 5799999986432 222
Q ss_pred eccc-------CCCCCeEEEEec---CCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 87 FRSG-------HSAPPLCIRFYA---NGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 87 ~~~~-------h~~~v~~i~~~~---~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
.... ....+..+|+.. +|. +.+..+.+|.+..|.+.....-..-.
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~------------------------ 198 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA------------------------ 198 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE------------------------
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee------------------------
Confidence 2221 112356777753 344 66677888988888875322100000
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 235 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~ 235 (685)
..++-+ ...+.+..|.+.....+|++|-++--|..|+.....
T Consensus 199 ----------------------~lVR~f----------------~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~ 240 (381)
T PF02333_consen 199 ----------------------TLVREF----------------KVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEG 240 (381)
T ss_dssp ----------------------EEEEEE----------------E-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC
T ss_pred ----------------------EEEEEe----------------cCCCcceEEEEecccCCEEEecCccEEEEEecCCCC
Confidence 001111 123468888999999999999999999999886332
Q ss_pred cc-cccccccccccCCCCcCEEEEEEc--CCC-CEEEEEE-CCCeEEEEECCC
Q 005656 236 SR-GSYLDMSERSNYAHNGEVVGVACD--STN-TLMISAG-YHGDIKVWDFKG 283 (685)
Q Consensus 236 ~~-~~~~~~~~~~~~~h~~~v~~l~~~--~~~-~~l~s~s-~dg~i~iwd~~~ 283 (685)
.. ..+.... ........|-+++.- +++ .+|+.++ .+++..+|+...
T Consensus 241 ~~~~~~v~~~--~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 241 GNDRTLVASA--DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp -S--EEEEEB--SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred CCcceeeecc--cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 21 1111000 111344567777764 333 3555444 677899999774
No 491
>PLN02153 epithiospecifier protein
Probab=86.57 E-value=41 Score=34.41 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=15.9
Q ss_pred CCCCEEEEEeCC-------CcEEEEeCCCCeee
Q 005656 13 DGQPLLASGASS-------GVISIWNLEKRRLQ 38 (685)
Q Consensus 13 dg~~~latg~~d-------g~I~vwd~~~~~~~ 38 (685)
++. +++.|+.+ ..+.+||+.+.+-.
T Consensus 32 ~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 63 (341)
T PLN02153 32 GDK-LYSFGGELKPNEHIDKDLYVFDFNTHTWS 63 (341)
T ss_pred CCE-EEEECCccCCCCceeCcEEEEECCCCEEE
Confidence 345 67777653 35788898876543
No 492
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.26 E-value=11 Score=38.55 Aligned_cols=163 Identities=10% Similarity=0.062 Sum_probs=93.8
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc-cccccccccCC-CCcCEE-EEEEcCCCCEEEEEECCCeE
Q 005656 200 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS-YLDMSERSNYA-HNGEVV-GVACDSTNTLMISAGYHGDI 276 (685)
Q Consensus 200 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~-h~~~v~-~l~~~~~~~~l~s~s~dg~i 276 (685)
.....+..+-..|+|+.+++-+. ..+.++++.+...... +... ..+ ....|+ .+..-..|.-+..++.||.|
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~d----spg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDD----SPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhc----CCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 33566778889999999988766 6788888876543322 1100 001 001111 11122345567778888888
Q ss_pred EEE-ECCCC-c----eEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 005656 277 KVW-DFKGR-D----LKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 349 (685)
Q Consensus 277 ~iw-d~~~~-~----~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~ 349 (685)
.-| |.+.+ . .++.++.. .++..+.-..+.+-+++-+.+|++.++.....+.+-.-. --..+.-+++||.+.+
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccch
Confidence 777 44322 2 11222221 334333333344567777788888877655444332222 2235667899999999
Q ss_pred EEEEeCCCcEEEEEcCCCce
Q 005656 350 LLSSGMDGSLRIWDVILARQ 369 (685)
Q Consensus 350 l~s~s~Dg~I~iwd~~~~~~ 369 (685)
|++-. .|.|+++.+.+..+
T Consensus 372 Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 372 LLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred heeec-CCceEEEEecCCCC
Confidence 98764 46699988876543
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.72 E-value=43 Score=33.90 Aligned_cols=107 Identities=7% Similarity=0.035 Sum_probs=54.5
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCccc---cccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-----CCeEEEE
Q 005656 213 CGNFAVLGTAG-----GWIERFNLQSGISR---GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGDIKVW 279 (685)
Q Consensus 213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----dg~i~iw 279 (685)
++...++|+.+ ..+..||+.+.... ......+. ... .. +++. -+++..+.|+. ...+..|
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~----~~~-~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~y 144 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPF----TFE-NG-SACY-KDGTLYVGGGNRNGKPSNKSYLF 144 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCc----Ccc-Cc-eEEE-ECCEEEEEeCcCCCccCceEEEE
Confidence 55666777654 35778888766531 11111100 111 11 1222 24566666663 2358888
Q ss_pred ECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCCC----eEEEEEcCCCe
Q 005656 280 DFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDL----VIRLFDVVALR 326 (685)
Q Consensus 280 d~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg----~I~i~d~~~~~ 326 (685)
|+.+.+-...-..+ ......+...++++.+.|+.++ .+.+||..+.+
T Consensus 145 d~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 145 NLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred cCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 88766543321111 1222233345677778877654 35688887754
No 494
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=85.54 E-value=86 Score=37.19 Aligned_cols=330 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred eCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-------EEEEecCCCcEEEEEecCCCCCCceeEecccCCCC
Q 005656 22 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-------VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 94 (685)
Q Consensus 22 ~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-------~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~ 94 (685)
+..+.+.|=. +..-.....-.||..+|.|..+.-.-. .-++.+.||++.|=|+ ..++........
T Consensus 324 GnG~n~~it~-~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf-------NyIRRI~~dg~v 395 (1899)
T KOG4659|consen 324 GNGGNRLITE-EPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF-------NYIRRISQDGQV 395 (1899)
T ss_pred cCCcceEeec-CCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc-------hheeeecCCCce
Q ss_pred CeEEEEecC----CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcce
Q 005656 95 PLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 170 (685)
Q Consensus 95 v~~i~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (685)
.+-+..... .-+++..--||++.+-|..+.+..+.-+.........--..........|...-........+
T Consensus 396 ~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~d---- 471 (1899)
T KOG4659|consen 396 STILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQD---- 471 (1899)
T ss_pred EEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhccc----
Q ss_pred EEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE------------------EecCCcEEEEECC
Q 005656 171 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL------------------GTAGGWIERFNLQ 232 (685)
Q Consensus 171 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~------------------g~~dg~i~~~d~~ 232 (685)
..-.....++++.+|..-++ |+..-+ |...
T Consensus 472 -----------------------------A~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~---~~p~ 519 (1899)
T KOG4659|consen 472 -----------------------------AQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQ---HPPR 519 (1899)
T ss_pred -----------------------------ceeccCCceeEccCCcEEEecccEEEEeccCceEEEeccCCCCc---cCcc
Q ss_pred CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeE--------------
Q 005656 233 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK-------------- 298 (685)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~-------------- 298 (685)
+......+.. -|-...+.++++|-.+.+..-..+-.+++=-...-..+.--..++.+..
T Consensus 520 ~C~~~~kl~~-------~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl 592 (1899)
T KOG4659|consen 520 TCAQITKLVD-------LQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTL 592 (1899)
T ss_pred ccccccchhh-------eeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhh
Q ss_pred -----EEEeecCCEEEEEeC------------CCeEEEE---------------EcCCCeeEEEEecCCCCeEEEEEcCC
Q 005656 299 -----IVYHRVNGLLATVAD------------DLVIRLF---------------DVVALRMVRKFEGHTDRITDFCFSED 346 (685)
Q Consensus 299 -----~~~~~~~~~l~~~~~------------dg~I~i~---------------d~~~~~~~~~~~~h~~~I~~l~~spd 346 (685)
++++++|.+.++-++ ||.|.++ |.-+++-...-.+|-+.+.++|.+||
T Consensus 593 ~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPd 672 (1899)
T KOG4659|consen 593 LIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPD 672 (1899)
T ss_pred hhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCC
Q ss_pred CCEEEEEeC--------------------------CCcEEEEEcCCCceeeEEeeccc--eEEEEE---cCCCCeEEEEE
Q 005656 347 GKWLLSSGM--------------------------DGSLRIWDVILARQIDAIHVDVS--ITALSL---SPNMDVLATAH 395 (685)
Q Consensus 347 g~~l~s~s~--------------------------Dg~I~iwd~~~~~~i~~~~~~~~--v~~v~~---spdg~~Lat~~ 395 (685)
|...++-+. +..+++|+ ..|....+...-.. ...+.+ +++|..=....
T Consensus 673 g~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~Y~Fn-r~GqH~sTvsliTget~ynFtY~v~ss~~~lsei~~ 751 (1899)
T KOG4659|consen 673 GDVIIADSGNSRIRKVSARMAKYDGSRTYEITDPERQEKYTFN-RHGQHSSTVSLITGETFYNFTYQVDSSIGMLSEITD 751 (1899)
T ss_pred CcEEEecCCchhhhhhhhcccccCCCceeeccCcccceeEEEe-ccceeeeeEEEEeceeEEEEEEecCCCcchhhhhhh
Q ss_pred eCCCeEEE
Q 005656 396 VDQNGVYL 403 (685)
Q Consensus 396 ~d~~~I~l 403 (685)
..|+.++|
T Consensus 752 a~Gn~l~i 759 (1899)
T KOG4659|consen 752 ASGNVLRV 759 (1899)
T ss_pred cCCcEEEE
No 495
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.42 E-value=4.4 Score=36.75 Aligned_cols=31 Identities=3% Similarity=0.028 Sum_probs=25.4
Q ss_pred CCCeEEEEecC------CCEEEEEeCCCceEEEEeec
Q 005656 93 APPLCIRFYAN------GRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 93 ~~v~~i~~~~~------~~~l~s~s~dg~i~vwd~~~ 123 (685)
..|.+++|||. +..|++.+.+|.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 47899999994 34788889999999998654
No 496
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.40 E-value=3.5 Score=26.70 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=25.3
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec
Q 005656 12 SDGQPLLASGASSGVISIWNLEKRRLQSVIRE 43 (685)
Q Consensus 12 pdg~~~latg~~dg~I~vwd~~~~~~~~~~~~ 43 (685)
|+|+.++++...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 57775555566789999999999988888773
No 497
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.28 E-value=4 Score=26.08 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=0.0
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEE-EEeCC--CcEEEE
Q 005656 328 VRKFEGHTDRITDFCFSEDGKWLL-SSGMD--GSLRIW 362 (685)
Q Consensus 328 ~~~~~~h~~~I~~l~~spdg~~l~-s~s~D--g~I~iw 362 (685)
++.+....+.-...+|||||++|+ ++..+ |.-.||
T Consensus 1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 498
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.22 E-value=51 Score=34.93 Aligned_cols=195 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred ccCeeEEEEeCCCcEEEEecCCCcEEEEEe-------cCCCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656 46 DNAIISLHFFANEPVLMSASADNSIKMWIF-------DTTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFR 117 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~-------~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~dg~i~ 117 (685)
.....+..+...|...++. |+.+.+|++ ... ..+... .++...+.++ ++.....|.|+
T Consensus 26 ~~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~----~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~ 91 (422)
T PF08801_consen 26 QSPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDG----SDFPLFDDGSSSSIPGV--------GLVKPKTGRVV 91 (422)
T ss_dssp TTS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--E----EEEE-----------SE--------EEEE-TT-EEE
T ss_pred ccceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcc----cccceecCCCCCCCceE--------EEEEcCCCCEE
Q ss_pred EEEeecCceeeEechh----------hHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCc
Q 005656 118 LFSVIQDQQSRELSQR----------HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 187 (685)
Q Consensus 118 vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 187 (685)
.|+-............ -.
T Consensus 92 f~~~I~~~l~~~t~~~i~l~gv~~~~l~---------------------------------------------------- 119 (422)
T PF08801_consen 92 FWESISHLLVLATPSQISLLGVSYSELL---------------------------------------------------- 119 (422)
T ss_dssp EES-TT-TT--EEEE-----------------------------------------------------------------
T ss_pred ecccchhhhhcCccccccccccceeeec----------------------------------------------------
Q ss_pred cccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccc-------------------c
Q 005656 188 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS-------------------N 248 (685)
Q Consensus 188 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~-------------------~ 248 (685)
............+.+ +++++.+|+|.....+.......+....... .
T Consensus 120 ------------~~e~~~~~~~~~~~~--~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~ 185 (422)
T PF08801_consen 120 ------------SGELSTSLTNVEPSG--FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSSLLPSF 185 (422)
T ss_dssp -----------------EEEEEEETTT--EEEEETT--EEEEEE-TTS-EEEEE-TT-----------------------
T ss_pred ------------CCceEEECCCCceEE--EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCceeccccCCc
Q ss_pred CCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe--------------------------ecCCceeEEEEe
Q 005656 249 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--------------------------EVGCSLVKIVYH 302 (685)
Q Consensus 249 ~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------------------------~~~~~i~~~~~~ 302 (685)
......|..+++++..+.+++.+.+|.|.+|++..+...... .....+.++...
T Consensus 186 ~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ildi~~i 265 (422)
T PF08801_consen 186 SDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGGSTLVSKVDIQEIILSSLQSAIPRSASSSDLSSISFKILDIHPI 265 (422)
T ss_dssp ------EEEEEEETTTTEEEEEESSE-EEEEEE-SS-EEEEEEEEHHHHHHHHHHHHHHTTSHHHHHTT-EEEEEEEEEE
T ss_pred ccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeCCCCceeeehhHHHHHHHHHHHhhhhhhhcccccCCCeEEEEEEEe
Q ss_pred ecC---CEEEEEeCCCeEEEE
Q 005656 303 RVN---GLLATVADDLVIRLF 320 (685)
Q Consensus 303 ~~~---~~l~~~~~dg~I~i~ 320 (685)
+.+ ..++++-.+...++|
T Consensus 266 ~~~~s~~~~Lva~t~~g~r~y 286 (422)
T PF08801_consen 266 SAGESSLLVLVAVTSNGCRLY 286 (422)
T ss_dssp TTEEEEEEEEE-TTSSS-BEE
T ss_pred CccCceeEEEEEeccCCcEEE
No 499
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.18 E-value=42 Score=33.31 Aligned_cols=167 Identities=10% Similarity=0.083 Sum_probs=90.7
Q ss_pred cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-----CEEEEE-ECCCeEEEEECCCCceEEEeecC-----
Q 005656 225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-----TLMISA-GYHGDIKVWDFKGRDLKSRWEVG----- 293 (685)
Q Consensus 225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~----- 293 (685)
.|.+||+.+++..+.+.-..... ...+.+..+.++... .++..+ +..+.|.++|+.+++..+.....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~--~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIA--PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred EEEEEECCCCcEEEEEECChHHc--ccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence 68889999998877664221111 245678888887732 233333 34568999999988765544321
Q ss_pred ---------------CceeEEEEee---cCCEEEEEeCCCeEEEEEcCC-----C---------eeEEEEecCCCCeEEE
Q 005656 294 ---------------CSLVKIVYHR---VNGLLATVADDLVIRLFDVVA-----L---------RMVRKFEGHTDRITDF 341 (685)
Q Consensus 294 ---------------~~i~~~~~~~---~~~~l~~~~~dg~I~i~d~~~-----~---------~~~~~~~~h~~~I~~l 341 (685)
..+..++.+| +++.|+-+.-.+ -++|.+.+ . +.+..+-........+
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~ 191 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM 191 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence 2344455544 445555444322 12222221 0 1122222122456778
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCC---ceeeEEe-ecc---ceEEEEEcC--CCCeEEEE
Q 005656 342 CFSEDGKWLLSSGMDGSLRIWDVILA---RQIDAIH-VDV---SITALSLSP--NMDVLATA 394 (685)
Q Consensus 342 ~~spdg~~l~s~s~Dg~I~iwd~~~~---~~i~~~~-~~~---~v~~v~~sp--dg~~Lat~ 394 (685)
+++++|.+.++--..+.|..|+..+. +....+. .+. -+.++.+.+ +|.+-+.+
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99999988888889999999998752 1222332 222 277888877 55443333
No 500
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.04 E-value=3.9 Score=45.07 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=44.6
Q ss_pred ecCCEEEEEeCCCeEEEEEcCC----CeeEEEE-ec---------------------CCCCeEEEEEcC----CCCEEEE
Q 005656 303 RVNGLLATVADDLVIRLFDVVA----LRMVRKF-EG---------------------HTDRITDFCFSE----DGKWLLS 352 (685)
Q Consensus 303 ~~~~~l~~~~~dg~I~i~d~~~----~~~~~~~-~~---------------------h~~~I~~l~~sp----dg~~l~s 352 (685)
++...++++..||.+....... +...... .. ..+.+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566777777888777776653 2111111 10 123456667766 6789999
Q ss_pred EeCCCcEEEEEcCCCceeeEEe
Q 005656 353 SGMDGSLRIWDVILARQIDAIH 374 (685)
Q Consensus 353 ~s~Dg~I~iwd~~~~~~i~~~~ 374 (685)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
Done!