Query 005656
Match_columns 685
No_of_seqs 1048 out of 3673
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 03:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 3.2E-47 1.1E-51 423.9 46.7 374 1-406 146-609 (611)
2 1nr0_A Actin interacting prote 100.0 2.4E-45 8.1E-50 408.8 50.9 376 1-408 58-567 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 4.8E-45 1.6E-49 404.6 49.7 357 1-405 220-577 (577)
4 1vyh_C Platelet-activating fac 100.0 1.2E-45 4.1E-50 390.4 39.4 283 1-365 107-410 (410)
5 1got_B GT-beta; complex (GTP-b 100.0 4E-45 1.4E-49 376.5 42.3 284 1-363 54-340 (340)
6 3ow8_A WD repeat-containing pr 100.0 1.4E-44 4.7E-49 368.8 40.5 283 1-365 31-320 (321)
7 1vyh_C Platelet-activating fac 100.0 1.6E-44 5.5E-49 381.8 40.8 287 38-406 101-409 (410)
8 3ow8_A WD repeat-containing pr 100.0 3.2E-44 1.1E-48 366.1 39.8 289 38-406 25-319 (321)
9 2ymu_A WD-40 repeat protein; u 100.0 1.7E-43 5.8E-48 392.2 48.8 358 1-407 15-374 (577)
10 2ynn_A Coatomer subunit beta'; 100.0 2.4E-43 8E-48 357.2 43.0 282 1-407 12-301 (304)
11 2pbi_B Guanine nucleotide-bind 100.0 1.5E-43 5.3E-48 366.5 41.3 285 1-363 63-354 (354)
12 1r5m_A SIR4-interacting protei 100.0 1.8E-43 6.2E-48 375.6 40.9 338 1-407 44-424 (425)
13 1gxr_A ESG1, transducin-like e 100.0 5.3E-43 1.8E-47 359.8 41.9 326 1-406 8-335 (337)
14 3iz6_a 40S ribosomal protein R 100.0 1E-43 3.5E-48 371.8 35.6 296 1-369 65-378 (380)
15 3frx_A Guanine nucleotide-bind 100.0 9.6E-43 3.3E-47 355.2 40.4 284 1-367 16-318 (319)
16 4gqb_B Methylosome protein 50; 100.0 4.6E-43 1.6E-47 360.3 36.8 283 1-407 29-330 (344)
17 4g56_B MGC81050 protein; prote 100.0 1.3E-43 4.3E-48 367.4 32.4 321 7-408 10-343 (357)
18 1got_B GT-beta; complex (GTP-b 100.0 3E-42 1E-46 355.0 42.3 292 35-405 45-340 (340)
19 4g56_B MGC81050 protein; prote 100.0 7.3E-43 2.5E-47 361.7 36.0 290 1-368 41-345 (357)
20 4ery_A WD repeat-containing pr 100.0 1.9E-41 6.7E-46 344.7 42.5 284 1-365 22-311 (312)
21 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.9E-42 1.7E-46 354.1 38.2 298 1-372 14-341 (345)
22 2pbi_B Guanine nucleotide-bind 100.0 2.4E-41 8.1E-46 350.1 42.9 294 36-405 55-354 (354)
23 2pm9_A Protein WEB1, protein t 100.0 1.3E-43 4.4E-48 376.1 24.2 341 3-407 13-413 (416)
24 1erj_A Transcriptional repress 100.0 1.6E-41 5.6E-46 356.8 39.8 290 1-367 63-390 (393)
25 2xzm_R RACK1; ribosome, transl 100.0 1.5E-41 5.1E-46 350.3 38.0 286 1-368 20-342 (343)
26 3iz6_a 40S ribosomal protein R 100.0 4.7E-42 1.6E-46 359.2 32.8 313 25-407 46-374 (380)
27 3frx_A Guanine nucleotide-bind 100.0 1.5E-40 5.3E-45 338.9 41.4 290 37-407 9-316 (319)
28 4ery_A WD repeat-containing pr 100.0 5E-40 1.7E-44 334.2 44.0 290 35-406 13-310 (312)
29 3sfz_A APAF-1, apoptotic pepti 100.0 4E-41 1.4E-45 406.7 42.1 396 1-408 656-1158(1249)
30 1pgu_A Actin interacting prote 100.0 1E-40 3.6E-45 372.5 41.4 375 1-407 159-613 (615)
31 2oaj_A Protein SNI1; WD40 repe 100.0 2.9E-40 9.8E-45 381.2 45.3 386 1-408 16-605 (902)
32 2hes_X YDR267CP; beta-propelle 100.0 1.6E-40 5.5E-45 340.4 38.6 290 1-366 13-328 (330)
33 3sfz_A APAF-1, apoptotic pepti 100.0 4.7E-40 1.6E-44 397.3 47.0 370 1-408 614-1074(1249)
34 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.4E-40 1.8E-44 338.8 40.1 300 35-408 5-335 (345)
35 4aow_A Guanine nucleotide-bind 100.0 9.8E-40 3.4E-44 336.1 41.8 287 1-368 37-339 (340)
36 3zwl_B Eukaryotic translation 100.0 1.1E-39 3.6E-44 339.6 41.3 302 1-372 31-352 (369)
37 2oaj_A Protein SNI1; WD40 repe 100.0 6.7E-40 2.3E-44 378.1 43.6 393 1-406 97-659 (902)
38 1pgu_A Actin interacting prote 100.0 1.6E-39 5.5E-44 362.9 44.0 377 1-408 62-572 (615)
39 2xzm_R RACK1; ribosome, transl 100.0 2.5E-39 8.4E-44 333.7 41.3 293 36-407 12-339 (343)
40 1erj_A Transcriptional repress 100.0 3.9E-39 1.3E-43 338.7 43.4 299 25-407 40-388 (393)
41 3vl1_A 26S proteasome regulato 100.0 3.1E-40 1E-44 350.7 34.8 326 5-407 59-418 (420)
42 2hes_X YDR267CP; beta-propelle 100.0 2.6E-39 9.1E-44 331.4 39.7 298 34-407 3-327 (330)
43 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.7E-39 2.3E-43 343.2 44.0 312 1-408 117-442 (445)
44 3dm0_A Maltose-binding peripla 100.0 1.4E-39 4.7E-44 368.4 40.8 286 1-365 381-692 (694)
45 3mkq_A Coatomer beta'-subunit; 100.0 4.6E-39 1.6E-43 371.7 42.6 324 1-408 12-386 (814)
46 4aow_A Guanine nucleotide-bind 100.0 2.2E-38 7.6E-43 325.9 42.5 309 20-407 9-336 (340)
47 1sq9_A Antiviral protein SKI8; 100.0 5.1E-39 1.7E-43 338.5 37.8 302 1-368 15-397 (397)
48 1gxr_A ESG1, transducin-like e 100.0 1.4E-38 4.7E-43 326.8 39.0 282 1-364 50-335 (337)
49 3v7d_B Cell division control p 100.0 5.8E-38 2E-42 337.8 44.3 335 1-405 120-460 (464)
50 3i2n_A WD repeat-containing pr 100.0 2E-39 6.9E-44 336.1 31.1 293 1-369 17-356 (357)
51 1k8k_C P40, ARP2/3 complex 41 100.0 2E-38 7E-43 330.6 36.6 291 1-368 7-363 (372)
52 3zwl_B Eukaryotic translation 100.0 3E-37 1E-41 321.1 42.8 296 38-409 25-347 (369)
53 3ei3_B DNA damage-binding prot 100.0 2.4E-38 8.3E-43 331.7 34.6 287 1-366 72-382 (383)
54 1sq9_A Antiviral protein SKI8; 100.0 6.9E-38 2.4E-42 329.8 38.1 296 38-407 9-394 (397)
55 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-37 5.2E-42 315.6 39.2 290 1-378 17-308 (313)
56 4e54_B DNA damage-binding prot 100.0 1.1E-38 3.7E-43 340.3 32.0 293 1-370 118-434 (435)
57 3k26_A Polycomb protein EED; W 100.0 2.4E-38 8E-43 329.1 33.3 295 1-366 17-366 (366)
58 4a11_B DNA excision repair pro 100.0 8.2E-38 2.8E-42 330.2 37.6 331 1-407 42-404 (408)
59 3ei3_B DNA damage-binding prot 100.0 3.2E-38 1.1E-42 330.8 33.6 296 30-407 58-381 (383)
60 3dm0_A Maltose-binding peripla 100.0 1.6E-37 5.5E-42 351.4 41.3 294 37-407 374-692 (694)
61 1r5m_A SIR4-interacting protei 100.0 1.9E-37 6.6E-42 329.1 37.1 280 1-365 107-424 (425)
62 3gre_A Serine/threonine-protei 100.0 3.3E-38 1.1E-42 337.0 31.2 323 9-405 34-437 (437)
63 4gga_A P55CDC, cell division c 100.0 3.9E-37 1.3E-41 326.6 38.6 290 5-374 108-403 (420)
64 4h5i_A Guanine nucleotide-exch 100.0 5.9E-38 2E-42 325.7 31.1 285 3-367 15-344 (365)
65 4aez_A CDC20, WD repeat-contai 100.0 2.3E-37 7.8E-42 326.4 35.6 284 5-373 96-387 (401)
66 2j04_B YDR362CP, TAU91; beta p 100.0 5.2E-39 1.8E-43 346.8 22.6 324 1-408 132-517 (524)
67 3i2n_A WD repeat-containing pr 100.0 3.3E-37 1.1E-41 319.4 34.4 299 34-408 6-353 (357)
68 3odt_A Protein DOA1; ubiquitin 100.0 2.2E-36 7.4E-41 307.1 39.3 285 35-408 8-296 (313)
69 2ynn_A Coatomer subunit beta'; 100.0 7.4E-37 2.5E-41 309.4 35.6 248 37-408 5-259 (304)
70 3k26_A Polycomb protein EED; W 100.0 2.1E-37 7.1E-42 322.0 32.1 290 38-407 10-365 (366)
71 2pm9_A Protein WEB1, protein t 100.0 4.6E-38 1.6E-42 333.3 27.2 296 1-367 66-415 (416)
72 4gqb_B Methylosome protein 50; 100.0 3.1E-37 1.1E-41 316.8 32.5 246 1-326 81-333 (344)
73 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-36 6.1E-41 315.9 38.0 290 44-407 6-360 (372)
74 3dw8_B Serine/threonine-protei 100.0 2.6E-37 9E-42 330.9 32.0 291 1-407 27-445 (447)
75 3dwl_C Actin-related protein 2 100.0 2.5E-38 8.6E-43 330.8 22.4 292 1-364 10-377 (377)
76 4ggc_A P55CDC, cell division c 100.0 4.7E-36 1.6E-40 305.4 38.2 284 5-368 28-317 (318)
77 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-36 5.5E-41 350.4 38.9 319 1-406 54-421 (814)
78 4h5i_A Guanine nucleotide-exch 100.0 2E-36 6.9E-41 314.1 34.6 296 46-413 14-348 (365)
79 3gre_A Serine/threonine-protei 100.0 2.5E-37 8.5E-42 330.2 28.4 286 1-363 62-437 (437)
80 4e54_B DNA damage-binding prot 100.0 5.7E-37 2E-41 326.9 30.7 290 38-407 112-429 (435)
81 1p22_A F-BOX/WD-repeat protein 100.0 4.8E-36 1.6E-40 319.9 34.5 293 1-386 132-434 (435)
82 3vl1_A 26S proteasome regulato 100.0 2.1E-35 7.2E-40 313.4 38.5 304 5-366 100-419 (420)
83 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-35 3.7E-40 306.3 32.9 311 1-374 10-345 (351)
84 1yfq_A Cell cycle arrest prote 100.0 1.5E-35 5.2E-40 305.1 34.0 277 1-364 10-322 (342)
85 2pm7_B Protein transport prote 100.0 1.3E-35 4.4E-40 299.2 32.7 258 1-365 8-284 (297)
86 3dwl_C Actin-related protein 2 100.0 7.3E-37 2.5E-41 319.7 22.3 287 44-406 9-377 (377)
87 2pm7_B Protein transport prote 100.0 3.2E-35 1.1E-39 296.3 33.1 245 44-407 7-284 (297)
88 2j04_A TAU60, YPL007P, hypothe 100.0 6.8E-36 2.3E-40 313.4 27.9 298 2-395 15-349 (588)
89 3v7d_B Cell division control p 100.0 2.8E-34 9.6E-39 309.0 40.5 290 37-408 113-421 (464)
90 1yfq_A Cell cycle arrest prote 100.0 8.6E-35 2.9E-39 299.4 33.5 272 43-398 8-314 (342)
91 4a11_B DNA excision repair pro 100.0 1.8E-35 6.3E-40 312.1 29.2 307 23-408 21-365 (408)
92 3mmy_A MRNA export factor; mRN 100.0 7.2E-35 2.5E-39 302.9 32.5 282 1-366 38-346 (368)
93 3bg1_A Protein SEC13 homolog; 100.0 3.5E-35 1.2E-39 298.8 29.3 263 1-365 12-292 (316)
94 2j04_B YDR362CP, TAU91; beta p 100.0 4.5E-36 1.6E-40 323.8 22.7 282 1-366 206-517 (524)
95 4aez_A CDC20, WD repeat-contai 100.0 6.5E-34 2.2E-38 300.0 37.4 278 44-407 89-379 (401)
96 3mmy_A MRNA export factor; mRN 100.0 4.3E-34 1.5E-38 297.0 35.3 288 28-398 22-337 (368)
97 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-33 6.5E-38 300.8 40.4 272 1-366 158-442 (445)
98 3jrp_A Fusion protein of prote 100.0 6.5E-35 2.2E-39 304.6 27.6 328 1-406 10-376 (379)
99 4gga_A P55CDC, cell division c 100.0 3.5E-33 1.2E-37 296.2 40.3 274 48-406 107-393 (420)
100 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-34 3.6E-39 306.2 26.9 288 5-368 37-344 (402)
101 3bws_A Protein LP49; two-domai 100.0 1.3E-32 4.5E-37 293.1 41.8 319 4-407 62-431 (433)
102 4ggc_A P55CDC, cell division c 100.0 8.4E-33 2.9E-37 281.3 38.0 274 49-407 28-314 (318)
103 3bg1_A Protein SEC13 homolog; 100.0 1.5E-34 5.2E-39 294.1 24.3 248 41-407 8-292 (316)
104 1p22_A F-BOX/WD-repeat protein 100.0 3.1E-33 1.1E-37 298.1 35.3 273 44-408 131-414 (435)
105 3f3f_A Nucleoporin SEH1; struc 100.0 7.3E-33 2.5E-37 285.1 33.5 305 43-407 8-336 (351)
106 3jrp_A Fusion protein of prote 100.0 8.1E-33 2.8E-37 288.7 34.0 260 36-370 2-291 (379)
107 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.1E-33 2.8E-37 296.2 34.6 285 2-365 4-390 (450)
108 1l0q_A Surface layer protein; 100.0 2.2E-31 7.5E-36 279.6 43.1 277 16-378 3-287 (391)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 2.8E-33 9.6E-38 295.2 28.6 290 48-407 36-341 (402)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.6E-32 2.9E-36 288.3 36.6 287 46-406 4-389 (450)
111 3vu4_A KMHSV2; beta-propeller 100.0 7.7E-32 2.6E-36 278.7 32.9 285 29-407 3-335 (355)
112 2xyi_A Probable histone-bindin 100.0 7.8E-32 2.7E-36 286.6 33.5 295 4-367 47-411 (430)
113 3bws_A Protein LP49; two-domai 100.0 1.3E-31 4.5E-36 285.4 34.4 280 3-366 123-432 (433)
114 3jro_A Fusion protein of prote 100.0 2.8E-33 9.5E-38 318.5 22.4 336 1-410 8-378 (753)
115 3vu4_A KMHSV2; beta-propeller 100.0 1.8E-31 6.1E-36 276.0 31.5 282 1-368 18-338 (355)
116 3dw8_B Serine/threonine-protei 100.0 7.7E-32 2.6E-36 288.4 27.7 284 44-408 26-373 (447)
117 2xyi_A Probable histone-bindin 100.0 1.4E-30 4.7E-35 277.0 35.7 302 47-408 46-410 (430)
118 2j04_A TAU60, YPL007P, hypothe 100.0 9.1E-32 3.1E-36 282.2 25.5 260 44-407 13-296 (588)
119 3lrv_A PRE-mRNA-splicing facto 100.0 8.5E-32 2.9E-36 277.4 24.6 273 54-405 44-330 (343)
120 1l0q_A Surface layer protein; 100.0 1.9E-29 6.7E-34 264.7 38.0 266 59-408 3-275 (391)
121 3jro_A Fusion protein of prote 100.0 3.2E-31 1.1E-35 301.6 26.0 254 40-368 4-287 (753)
122 1nir_A Nitrite reductase; hemo 100.0 2.6E-29 8.8E-34 273.3 37.6 326 9-408 144-514 (543)
123 2w18_A PALB2, fancn, partner a 100.0 1.9E-29 6.6E-34 248.6 31.9 278 5-406 42-355 (356)
124 4gq1_A NUP37; propeller, trans 100.0 9.3E-31 3.2E-35 274.6 22.6 258 8-365 95-388 (393)
125 4gq1_A NUP37; propeller, trans 100.0 1E-29 3.4E-34 266.8 29.0 243 91-406 88-387 (393)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.7E-29 5.9E-34 266.6 28.3 299 4-389 64-410 (415)
127 3lrv_A PRE-mRNA-splicing facto 100.0 1E-29 3.4E-34 261.8 24.1 226 100-407 44-291 (343)
128 2ecf_A Dipeptidyl peptidase IV 100.0 2.1E-28 7.2E-33 279.3 34.1 338 3-406 37-457 (741)
129 1k32_A Tricorn protease; prote 100.0 2.8E-27 9.6E-32 279.4 37.5 364 1-406 51-500 (1045)
130 2w18_A PALB2, fancn, partner a 100.0 7.7E-28 2.6E-32 237.2 26.5 221 45-364 110-355 (356)
131 1k32_A Tricorn protease; prote 100.0 1E-25 3.5E-30 266.0 38.1 386 2-408 14-461 (1045)
132 1ri6_A Putative isomerase YBHE 100.0 1.9E-25 6.4E-30 229.4 35.3 300 17-389 7-335 (343)
133 1nir_A Nitrite reductase; hemo 100.0 4.1E-26 1.4E-30 248.1 31.2 294 5-377 181-525 (543)
134 3u4y_A Uncharacterized protein 99.9 1.7E-25 5.9E-30 228.8 32.9 282 8-368 3-306 (331)
135 2z3z_A Dipeptidyl aminopeptida 99.9 8.4E-26 2.9E-30 256.3 32.9 328 5-407 28-434 (706)
136 1xfd_A DIP, dipeptidyl aminope 99.9 1E-26 3.4E-31 264.7 25.0 336 4-397 18-430 (723)
137 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.4E-26 1.2E-30 241.3 25.0 278 46-407 62-386 (415)
138 3vgz_A Uncharacterized protein 99.9 8.3E-24 2.8E-28 218.2 37.0 269 3-398 41-335 (353)
139 3u4y_A Uncharacterized protein 99.9 4.3E-24 1.5E-28 218.4 31.3 273 53-408 4-304 (331)
140 2ecf_A Dipeptidyl peptidase IV 99.9 3E-24 1E-28 245.0 30.9 278 46-407 36-412 (741)
141 1ri6_A Putative isomerase YBHE 99.9 3.4E-24 1.1E-28 220.1 28.2 269 60-406 7-306 (343)
142 2ojh_A Uncharacterized protein 99.9 6.5E-24 2.2E-28 212.7 28.8 254 20-398 17-293 (297)
143 1pby_B Quinohemoprotein amine 99.9 6.1E-24 2.1E-28 217.5 27.5 273 17-377 3-321 (337)
144 2z3z_A Dipeptidyl aminopeptida 99.9 1.5E-23 5.2E-28 237.7 30.5 352 3-405 82-473 (706)
145 1pby_B Quinohemoprotein amine 99.9 1E-23 3.5E-28 215.8 25.9 268 59-407 2-309 (337)
146 1xfd_A DIP, dipeptidyl aminope 99.9 1E-23 3.4E-28 239.9 22.7 281 47-407 17-392 (723)
147 1jmx_B Amine dehydrogenase; ox 99.9 2.9E-22 9.8E-27 206.2 30.8 294 6-376 3-335 (349)
148 1z68_A Fibroblast activation p 99.9 1.9E-23 6.4E-28 237.4 23.7 339 7-406 20-441 (719)
149 3hfq_A Uncharacterized protein 99.9 2.2E-21 7.6E-26 199.7 36.3 291 17-371 4-324 (347)
150 3scy_A Hypothetical bacterial 99.9 3.4E-21 1.2E-25 199.5 36.7 310 17-385 15-360 (361)
151 3o4h_A Acylamino-acid-releasin 99.9 7.4E-23 2.5E-27 226.4 25.4 271 44-406 19-313 (582)
152 3scy_A Hypothetical bacterial 99.9 1.3E-20 4.5E-25 195.1 39.1 281 58-407 13-336 (361)
153 3o4h_A Acylamino-acid-releasin 99.9 1.4E-22 4.8E-27 224.2 24.3 270 2-366 21-315 (582)
154 3hfq_A Uncharacterized protein 99.9 6.2E-21 2.1E-25 196.3 33.4 273 66-406 14-315 (347)
155 2ojh_A Uncharacterized protein 99.9 8.1E-22 2.8E-26 197.4 24.3 233 1-357 40-293 (297)
156 1jmx_B Amine dehydrogenase; ox 99.9 4E-21 1.4E-25 197.6 27.1 279 51-407 4-324 (349)
157 3pe7_A Oligogalacturonate lyas 99.9 2.4E-21 8.1E-26 202.7 25.7 296 28-405 13-379 (388)
158 3vgz_A Uncharacterized protein 99.9 1.5E-20 5.1E-25 193.7 30.2 246 92-407 40-302 (353)
159 2oiz_A Aromatic amine dehydrog 99.9 5.7E-20 2E-24 189.6 31.6 284 23-389 29-360 (361)
160 3pe7_A Oligogalacturonate lyas 99.9 1.5E-20 5.2E-25 196.6 25.7 295 8-365 41-381 (388)
161 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.9E-19 6.7E-24 186.4 29.2 275 61-407 5-340 (365)
162 1z68_A Fibroblast activation p 99.9 5.3E-21 1.8E-25 217.2 18.6 282 50-407 19-390 (719)
163 4a5s_A Dipeptidyl peptidase 4 99.9 1.4E-19 4.9E-24 205.6 30.3 340 3-406 17-447 (740)
164 1jof_A Carboxy-CIS,CIS-muconat 99.9 7E-19 2.4E-23 182.2 32.3 278 17-367 4-342 (365)
165 2oit_A Nucleoporin 214KDA; NH2 99.9 2.3E-19 8E-24 189.6 29.0 249 3-323 37-332 (434)
166 2oit_A Nucleoporin 214KDA; NH2 99.8 4.7E-20 1.6E-24 195.0 19.2 206 202-409 36-279 (434)
167 3c5m_A Oligogalacturonate lyas 99.8 8.1E-20 2.8E-24 191.4 20.9 312 28-405 13-379 (396)
168 3c5m_A Oligogalacturonate lyas 99.8 1.3E-19 4.3E-24 190.0 19.9 298 5-369 38-387 (396)
169 4a5s_A Dipeptidyl peptidase 4 99.8 7.4E-19 2.5E-23 199.7 25.9 275 46-397 16-383 (740)
170 3azo_A Aminopeptidase; POP fam 99.8 1.1E-18 3.9E-23 196.0 25.2 320 1-405 22-408 (662)
171 1qks_A Cytochrome CD1 nitrite 99.8 1.6E-16 5.6E-21 172.0 39.3 320 17-408 169-538 (567)
172 3fvz_A Peptidyl-glycine alpha- 99.8 4.8E-17 1.6E-21 165.7 28.7 250 3-366 24-322 (329)
173 2oiz_A Aromatic amine dehydrog 99.8 1.1E-16 3.8E-21 164.9 29.3 270 7-348 54-360 (361)
174 2dg1_A DRP35, lactonase; beta 99.8 1.2E-16 4.2E-21 163.0 29.2 270 46-398 5-301 (333)
175 2dg1_A DRP35, lactonase; beta 99.8 7.3E-17 2.5E-21 164.7 26.6 270 3-357 6-301 (333)
176 3azo_A Aminopeptidase; POP fam 99.8 9.3E-17 3.2E-21 180.4 28.5 271 44-392 21-350 (662)
177 1q7f_A NHL, brain tumor CG1071 99.8 5.2E-16 1.8E-20 154.6 30.1 242 44-368 27-282 (286)
178 1q7f_A NHL, brain tumor CG1071 99.8 5.3E-16 1.8E-20 154.6 30.2 241 90-406 27-278 (286)
179 3fvz_A Peptidyl-glycine alpha- 99.8 4.4E-16 1.5E-20 158.6 29.0 271 92-407 23-321 (329)
180 2gop_A Trilobed protease; beta 99.8 2.2E-16 7.6E-21 162.1 27.1 258 47-406 15-329 (347)
181 3dsm_A Uncharacterized protein 99.8 2.7E-16 9.2E-21 159.9 26.8 279 23-384 15-319 (328)
182 2gop_A Trilobed protease; beta 99.7 6.2E-16 2.1E-20 158.7 26.7 283 4-368 16-332 (347)
183 2z2n_A Virginiamycin B lyase; 99.7 2.9E-14 1E-18 142.6 37.9 278 3-368 15-297 (299)
184 3sjl_D Methylamine dehydrogena 99.7 3.3E-15 1.1E-19 151.5 28.3 295 8-387 38-384 (386)
185 2xdw_A Prolyl endopeptidase; a 99.7 2.4E-15 8.1E-20 170.1 30.0 243 4-368 126-416 (710)
186 2xdw_A Prolyl endopeptidase; a 99.7 4.9E-15 1.7E-19 167.5 30.8 278 56-407 81-413 (710)
187 2bkl_A Prolyl endopeptidase; m 99.7 2.5E-15 8.5E-20 169.4 28.0 278 10-369 75-400 (695)
188 1qks_A Cytochrome CD1 nitrite 99.7 3.1E-14 1.1E-18 154.2 34.9 294 4-375 198-547 (567)
189 3e5z_A Putative gluconolactona 99.7 6.3E-15 2.1E-19 147.6 27.5 248 37-370 19-290 (296)
190 2mad_H Methylamine dehydrogena 99.7 2.1E-13 7.3E-18 140.4 38.5 280 9-373 27-357 (373)
191 3dsm_A Uncharacterized protein 99.7 1.2E-14 4.1E-19 147.7 28.8 260 66-407 15-301 (328)
192 3e5z_A Putative gluconolactona 99.7 1.2E-14 4E-19 145.6 28.3 237 89-405 24-283 (296)
193 2z2n_A Virginiamycin B lyase; 99.7 2.8E-13 9.5E-18 135.5 37.5 275 44-406 12-293 (299)
194 2bkl_A Prolyl endopeptidase; m 99.7 4.2E-15 1.4E-19 167.5 25.8 278 55-407 76-396 (695)
195 3no2_A Uncharacterized protein 99.7 2.7E-14 9.1E-19 140.8 27.4 241 57-375 4-261 (276)
196 1rwi_B Serine/threonine-protei 99.7 2.2E-14 7.4E-19 141.4 25.7 241 48-369 25-267 (270)
197 1rwi_B Serine/threonine-protei 99.6 3.5E-14 1.2E-18 139.9 25.0 240 4-326 25-266 (270)
198 2qc5_A Streptogramin B lactona 99.6 9.7E-13 3.3E-17 131.5 35.6 276 3-364 20-298 (300)
199 3c75_H MADH, methylamine dehyd 99.6 6.7E-14 2.3E-18 144.7 26.9 291 12-387 82-423 (426)
200 2mad_H Methylamine dehydrogena 99.6 1.3E-12 4.6E-17 134.4 36.6 274 54-408 28-350 (373)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 4.4E-13 1.5E-17 135.2 31.3 198 203-407 71-298 (314)
202 1yr2_A Prolyl oligopeptidase; 99.6 8.8E-14 3E-18 157.8 26.4 277 55-407 115-440 (741)
203 3no2_A Uncharacterized protein 99.6 1.5E-13 5.2E-18 135.3 24.8 238 14-333 5-261 (276)
204 1yr2_A Prolyl oligopeptidase; 99.6 1.7E-13 5.7E-18 155.6 26.6 292 11-369 115-444 (741)
205 3sjl_D Methylamine dehydrogena 99.6 3.6E-13 1.2E-17 136.6 24.9 277 52-407 38-362 (386)
206 2qc5_A Streptogramin B lactona 99.6 8.4E-12 2.9E-16 124.6 35.1 273 45-406 18-298 (300)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2E-12 6.9E-17 130.3 26.3 241 46-366 17-299 (314)
208 3c75_H MADH, methylamine dehyd 99.5 2.6E-12 8.8E-17 132.9 23.3 274 56-408 82-402 (426)
209 1mda_H Methylamine dehydrogena 99.5 2.6E-12 8.9E-17 130.7 23.0 278 17-386 34-366 (368)
210 3hrp_A Uncharacterized protein 99.5 3E-11 1E-15 126.2 31.4 242 47-364 131-408 (409)
211 3g4e_A Regucalcin; six bladed 99.5 2.4E-11 8.3E-16 121.3 29.1 189 203-397 54-262 (297)
212 1kb0_A Quinohemoprotein alcoho 99.5 8.8E-12 3E-16 138.7 28.1 334 17-394 79-537 (677)
213 3hrp_A Uncharacterized protein 99.5 1.6E-11 5.4E-16 128.3 28.1 236 93-405 131-407 (409)
214 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.8E-10 6.1E-15 119.3 33.0 308 17-405 55-375 (376)
215 2ghs_A AGR_C_1268P; regucalcin 99.4 1.1E-10 3.8E-15 118.1 30.7 187 203-398 90-293 (326)
216 1yiq_A Quinohemoprotein alcoho 99.4 3E-11 1E-15 134.7 28.1 334 17-398 72-540 (689)
217 3g4e_A Regucalcin; six bladed 99.4 5.2E-11 1.8E-15 118.9 27.1 228 6-313 16-261 (297)
218 3iuj_A Prolyl endopeptidase; h 99.4 1.2E-11 4E-16 139.0 24.5 242 3-369 129-408 (693)
219 3dr2_A Exported gluconolactona 99.4 4.6E-11 1.6E-15 119.9 25.5 192 203-405 86-303 (305)
220 2qe8_A Uncharacterized protein 99.4 1.2E-11 4.3E-16 126.2 20.0 264 47-397 17-311 (343)
221 1xip_A Nucleoporin NUP159; bet 99.4 6.5E-12 2.2E-16 128.0 17.3 177 203-395 38-232 (388)
222 1xip_A Nucleoporin NUP159; bet 99.4 1.3E-11 4.4E-16 125.8 19.1 133 202-353 88-231 (388)
223 2ece_A 462AA long hypothetical 99.4 3.4E-10 1.2E-14 115.3 28.0 139 257-395 192-399 (462)
224 2qe8_A Uncharacterized protein 99.4 5.1E-11 1.7E-15 121.7 22.3 264 4-362 18-317 (343)
225 2ghs_A AGR_C_1268P; regucalcin 99.4 7.2E-10 2.5E-14 112.2 30.0 228 5-314 51-292 (326)
226 3dr2_A Exported gluconolactona 99.4 1.1E-10 3.7E-15 117.1 23.5 229 4-316 46-299 (305)
227 3hxj_A Pyrrolo-quinoline quino 99.4 3.1E-11 1E-15 122.5 19.7 296 7-405 24-321 (330)
228 3iuj_A Prolyl endopeptidase; h 99.3 8.3E-11 2.8E-15 132.1 23.5 192 207-407 179-404 (693)
229 1fwx_A Nitrous oxide reductase 99.3 2.6E-11 9E-16 127.9 17.9 271 12-369 99-434 (595)
230 1yiq_A Quinohemoprotein alcoho 99.3 3.4E-10 1.1E-14 126.3 27.9 146 212-357 314-540 (689)
231 1kb0_A Quinohemoprotein alcoho 99.3 9.3E-10 3.2E-14 122.4 29.2 145 208-352 318-536 (677)
232 1mda_H Methylamine dehydrogena 99.3 7.6E-11 2.6E-15 119.9 17.2 262 60-408 34-346 (368)
233 2hz6_A Endoplasmic reticulum t 99.2 1.4E-13 4.6E-18 142.1 -5.3 261 57-407 8-278 (369)
234 4a2l_A BT_4663, two-component 99.2 9.2E-08 3.2E-12 109.3 42.0 324 5-407 175-525 (795)
235 1fwx_A Nitrous oxide reductase 99.2 1.5E-09 5.1E-14 114.6 23.3 281 16-397 16-408 (595)
236 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.4E-08 4.6E-13 105.1 28.6 263 17-363 105-375 (376)
237 2hz6_A Endoplasmic reticulum t 99.2 9.9E-12 3.4E-16 128.1 4.6 167 211-389 46-216 (369)
238 2iwa_A Glutamine cyclotransfer 99.2 1.2E-08 4.2E-13 97.8 25.5 193 204-408 22-237 (266)
239 1kv9_A Type II quinohemoprotei 99.2 1E-08 3.4E-13 114.0 27.9 335 17-396 68-521 (668)
240 1npe_A Nidogen, entactin; glyc 99.1 1.2E-07 4.1E-12 92.7 32.4 248 17-348 3-263 (267)
241 4a2l_A BT_4663, two-component 99.1 4.8E-07 1.6E-11 103.3 42.2 324 3-407 215-570 (795)
242 2ece_A 462AA long hypothetical 99.1 9.3E-09 3.2E-13 104.8 24.7 230 12-312 93-399 (462)
243 2ad6_A Methanol dehydrogenase 99.1 1.5E-08 5E-13 110.3 26.2 333 17-394 64-524 (571)
244 1w6s_A Methanol dehydrogenase 99.1 7.1E-08 2.4E-12 104.8 30.6 342 17-396 64-536 (599)
245 3hxj_A Pyrrolo-quinoline quino 99.1 3.8E-09 1.3E-13 106.9 19.5 262 5-366 62-324 (330)
246 1flg_A Protein (quinoprotein e 99.1 1.2E-07 4.1E-12 103.2 31.5 196 207-404 250-557 (582)
247 1npe_A Nidogen, entactin; glyc 99.0 4E-07 1.4E-11 88.9 30.6 176 203-389 79-263 (267)
248 3nol_A Glutamine cyclotransfer 99.0 7.8E-08 2.7E-12 90.9 21.6 182 203-397 43-245 (262)
249 1kv9_A Type II quinohemoprotei 98.9 6.4E-08 2.2E-12 107.5 23.3 193 214-407 162-487 (668)
250 3v9f_A Two-component system se 98.9 5.2E-06 1.8E-10 94.5 37.9 325 3-407 211-567 (781)
251 3v9f_A Two-component system se 98.9 9.7E-06 3.3E-10 92.3 39.5 335 3-407 163-523 (781)
252 2iwa_A Glutamine cyclotransfer 98.9 2.6E-07 9E-12 88.5 21.9 193 95-367 23-238 (266)
253 3nok_A Glutaminyl cyclase; bet 98.9 5.4E-07 1.8E-11 85.2 23.4 182 203-397 55-255 (268)
254 3nol_A Glutamine cyclotransfer 98.9 2.7E-07 9.3E-12 87.2 21.1 190 83-355 32-244 (262)
255 3mbr_X Glutamine cyclotransfer 98.9 7.1E-07 2.4E-11 83.7 23.7 183 202-397 20-224 (243)
256 2fp8_A Strictosidine synthase; 98.9 1.2E-06 4E-11 88.2 26.9 198 204-409 81-314 (322)
257 2p4o_A Hypothetical protein; p 98.8 6E-06 2.1E-10 82.3 29.2 245 35-357 22-279 (306)
258 2ad6_A Methanol dehydrogenase 98.8 7.8E-07 2.7E-11 96.7 24.2 193 214-407 160-493 (571)
259 2fp8_A Strictosidine synthase; 98.8 1.4E-06 4.7E-11 87.7 23.5 241 47-366 19-313 (322)
260 2p4o_A Hypothetical protein; p 98.7 5.9E-06 2E-10 82.3 27.8 184 204-398 73-279 (306)
261 1flg_A Protein (quinoprotein e 98.7 5.6E-06 1.9E-10 90.0 27.5 82 273-354 465-548 (582)
262 1w6s_A Methanol dehydrogenase 98.7 3.1E-06 1E-10 91.9 25.2 82 273-354 452-535 (599)
263 3mbr_X Glutamine cyclotransfer 98.7 4.8E-06 1.6E-10 78.1 23.1 130 214-355 74-223 (243)
264 1k3i_A Galactose oxidase precu 98.7 3.1E-06 1.1E-10 94.1 25.4 272 51-396 190-530 (656)
265 3v64_C Agrin; beta propeller, 98.7 7.8E-05 2.7E-09 75.5 33.7 253 5-343 36-294 (349)
266 3nok_A Glutaminyl cyclase; bet 98.6 3.9E-06 1.3E-10 79.3 21.2 188 84-354 45-253 (268)
267 1k3i_A Galactose oxidase precu 98.6 1.4E-06 4.8E-11 96.9 20.7 281 7-355 190-530 (656)
268 3s94_A LRP-6, low-density lipo 98.6 0.0014 5E-08 71.5 47.3 151 255-406 351-508 (619)
269 3tc9_A Hypothetical hydrolase; 98.6 1.8E-05 6E-10 82.8 27.3 194 202-406 178-428 (430)
270 3ei3_A DNA damage-binding prot 98.6 0.0012 4E-08 77.3 44.9 367 2-406 553-997 (1158)
271 3v65_B Low-density lipoprotein 98.6 5.1E-05 1.8E-09 78.1 30.2 252 6-343 80-337 (386)
272 1ijq_A LDL receptor, low-densi 98.6 0.00028 9.5E-09 70.4 33.9 238 17-334 3-248 (316)
273 3qqz_A Putative uncharacterize 98.6 9.9E-05 3.4E-09 70.2 28.4 213 3-280 27-250 (255)
274 3qqz_A Putative uncharacterize 98.5 2.7E-05 9.1E-10 74.2 24.2 196 199-405 23-250 (255)
275 2xe4_A Oligopeptidase B; hydro 98.5 1E-05 3.5E-10 91.2 24.3 114 4-123 175-304 (751)
276 2xbg_A YCF48-like protein; pho 98.5 0.00018 6.1E-09 72.2 30.7 272 3-363 36-319 (327)
277 3s94_A LRP-6, low-density lipo 98.5 0.0021 7.1E-08 70.2 41.2 382 6-405 130-548 (619)
278 3p5b_L Low density lipoprotein 98.5 0.00037 1.3E-08 71.9 33.4 248 17-344 85-340 (400)
279 4hw6_A Hypothetical protein, I 98.5 7.3E-05 2.5E-09 78.1 27.7 195 202-406 181-431 (433)
280 1ijq_A LDL receptor, low-densi 98.4 0.00052 1.8E-08 68.3 32.2 194 202-406 29-236 (316)
281 3sov_A LRP-6, low-density lipo 98.4 0.00028 9.5E-09 70.3 29.1 245 17-343 6-257 (318)
282 3v64_C Agrin; beta propeller, 98.4 0.00032 1.1E-08 71.0 30.0 162 204-374 117-283 (349)
283 2xe4_A Oligopeptidase B; hydro 98.4 2.6E-05 8.9E-10 88.0 22.2 189 204-405 175-395 (751)
284 3tc9_A Hypothetical hydrolase; 98.3 0.00013 4.5E-09 76.1 25.7 152 205-365 228-429 (430)
285 3v65_B Low-density lipoprotein 98.3 0.00041 1.4E-08 71.3 29.1 162 205-375 161-327 (386)
286 2xbg_A YCF48-like protein; pho 98.3 0.0014 4.8E-08 65.5 31.8 186 204-405 123-319 (327)
287 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0082 2.8E-07 65.6 49.9 152 254-407 341-507 (628)
288 3p5b_L Low density lipoprotein 98.3 0.0012 3.9E-08 68.2 30.8 195 202-405 111-317 (400)
289 3ei3_A DNA damage-binding prot 98.3 0.018 6E-07 67.5 43.3 340 26-407 493-912 (1158)
290 4hw6_A Hypothetical protein, I 98.2 0.00016 5.4E-09 75.5 23.3 153 205-365 230-432 (433)
291 3kya_A Putative phosphatase; s 98.2 0.00047 1.6E-08 72.1 26.5 195 203-408 186-475 (496)
292 3amr_A 3-phytase; beta-propell 98.2 0.00043 1.5E-08 68.3 24.3 122 253-374 128-272 (355)
293 3m0c_C LDL receptor, low-densi 98.2 0.002 6.9E-08 72.1 32.9 246 17-342 397-650 (791)
294 4a0p_A LRP6, LRP-6, low-densit 98.2 0.013 4.6E-07 63.9 44.3 226 17-325 8-238 (628)
295 3amr_A 3-phytase; beta-propell 98.2 0.00062 2.1E-08 67.2 24.9 196 17-291 42-272 (355)
296 3sov_A LRP-6, low-density lipo 98.1 0.0011 3.8E-08 65.9 25.7 163 204-375 80-247 (318)
297 2ism_A Putative oxidoreductase 98.1 0.0015 5.2E-08 66.0 26.0 191 202-396 74-334 (352)
298 2p9w_A MAL S 1 allergenic prot 98.1 0.00095 3.2E-08 65.3 23.1 200 203-405 13-262 (334)
299 3kya_A Putative phosphatase; s 98.0 0.0046 1.6E-07 64.6 28.8 117 5-122 141-277 (496)
300 1n7d_A LDL receptor, low-densi 98.0 5E-05 1.7E-09 84.5 13.8 243 24-345 385-635 (699)
301 3m0c_C LDL receptor, low-densi 98.0 0.006 2.1E-07 68.3 30.5 195 202-405 423-629 (791)
302 2ism_A Putative oxidoreductase 97.9 0.0064 2.2E-07 61.4 26.1 103 5-111 33-153 (352)
303 2xzh_A Clathrin heavy chain 1; 97.8 0.03 1E-06 54.2 29.0 263 24-370 48-336 (365)
304 2p9w_A MAL S 1 allergenic prot 97.7 0.002 6.7E-08 63.0 18.4 152 254-407 14-214 (334)
305 3sre_A PON1, serum paraoxonase 97.7 0.0063 2.1E-07 60.9 21.9 197 204-404 51-294 (355)
306 2g8s_A Glucose/sorbosone dehyd 97.6 0.0078 2.7E-07 60.8 22.7 190 203-395 66-341 (353)
307 1n7d_A LDL receptor, low-densi 97.6 0.00027 9.2E-09 78.6 12.5 162 205-375 455-623 (699)
308 3a9g_A Putative uncharacterize 97.6 0.029 1E-06 56.5 26.2 189 203-395 73-330 (354)
309 3sre_A PON1, serum paraoxonase 97.6 0.024 8E-07 56.7 24.9 97 294-392 221-329 (355)
310 2xzh_A Clathrin heavy chain 1; 97.5 0.071 2.4E-06 51.6 28.6 239 9-283 73-332 (365)
311 3a9g_A Putative uncharacterize 97.5 0.026 9E-07 56.8 24.1 62 293-354 258-330 (354)
312 1bpo_A Protein (clathrin); cla 97.5 0.11 3.8E-06 52.3 32.2 236 24-343 47-308 (494)
313 2g8s_A Glucose/sorbosone dehyd 97.5 0.059 2E-06 54.2 26.5 67 251-317 269-347 (353)
314 3ott_A Two-component system se 97.4 0.25 8.6E-06 55.5 40.8 368 3-407 146-544 (758)
315 3ott_A Two-component system se 97.4 0.27 9.2E-06 55.2 39.1 314 3-407 22-351 (758)
316 1bpo_A Protein (clathrin); cla 97.4 0.14 4.9E-06 51.5 29.4 212 9-292 72-298 (494)
317 2vpj_A Kelch-like protein 12; 97.4 0.017 5.7E-07 56.8 20.7 106 213-326 159-280 (301)
318 2vpj_A Kelch-like protein 12; 97.3 0.028 9.6E-07 55.1 21.6 147 213-369 112-281 (301)
319 3das_A Putative oxidoreductase 97.3 0.16 5.5E-06 50.4 28.7 109 5-114 34-161 (347)
320 3s25_A Hypothetical 7-bladed b 97.3 0.078 2.7E-06 51.8 24.0 164 209-397 110-282 (302)
321 3pbp_A Nucleoporin NUP82; beta 97.3 0.039 1.3E-06 55.6 21.5 143 259-404 27-208 (452)
322 2xn4_A Kelch-like protein 2; s 97.3 0.018 6.3E-07 56.5 19.6 106 213-326 155-278 (302)
323 3ii7_A Kelch-like protein 7; p 97.2 0.076 2.6E-06 52.1 23.9 105 213-326 149-274 (306)
324 2xn4_A Kelch-like protein 2; s 97.2 0.029 9.8E-07 55.1 20.0 145 213-368 108-278 (302)
325 3das_A Putative oxidoreductase 97.2 0.091 3.1E-06 52.2 23.2 189 202-395 79-326 (347)
326 3ii7_A Kelch-like protein 7; p 97.1 0.021 7.3E-07 56.2 18.3 145 213-368 101-274 (306)
327 4asc_A Kelch repeat and BTB do 97.1 0.063 2.1E-06 53.0 21.6 107 212-326 147-279 (315)
328 2be1_A Serine/threonine-protei 97.1 0.0037 1.3E-07 61.9 11.7 152 221-378 64-244 (339)
329 2be1_A Serine/threonine-protei 97.0 0.01 3.5E-07 58.8 13.9 113 17-131 12-138 (339)
330 3sbq_A Nitrous-oxide reductase 96.9 0.13 4.4E-06 53.5 21.6 101 254-354 324-453 (638)
331 1cru_A Protein (soluble quinop 96.8 0.58 2E-05 48.7 30.4 108 5-113 29-164 (454)
332 1zgk_A Kelch-like ECH-associat 96.8 0.095 3.3E-06 51.5 19.8 105 213-326 168-289 (308)
333 2woz_A Kelch repeat and BTB do 96.8 0.14 4.7E-06 50.6 20.8 107 212-326 157-289 (318)
334 2uvk_A YJHT; unknown function, 96.6 0.13 4.5E-06 51.6 19.4 141 224-373 168-349 (357)
335 3pbp_A Nucleoporin NUP82; beta 96.6 0.15 5.2E-06 51.3 18.9 145 209-362 27-208 (452)
336 1tl2_A L10, protein (tachylect 96.5 0.13 4.6E-06 46.7 16.6 136 253-394 41-199 (236)
337 3sbq_A Nitrous-oxide reductase 96.5 0.18 6E-06 52.5 19.2 189 213-409 141-409 (638)
338 1zgk_A Kelch-like ECH-associat 96.5 0.15 5.1E-06 50.0 18.5 146 213-369 121-290 (308)
339 4asc_A Kelch repeat and BTB do 96.5 0.18 6.1E-06 49.7 19.0 205 178-397 13-253 (315)
340 1tl2_A L10, protein (tachylect 96.4 0.072 2.5E-06 48.5 13.9 147 204-359 42-203 (236)
341 1cru_A Protein (soluble quinop 96.4 0.37 1.3E-05 50.2 21.7 144 254-397 28-248 (454)
342 3s25_A Hypothetical 7-bladed b 96.3 0.92 3.2E-05 44.1 28.9 125 209-354 151-280 (302)
343 1xi4_A Clathrin heavy chain; a 96.1 0.29 1E-05 57.0 19.9 204 10-239 73-295 (1630)
344 1xi4_A Clathrin heavy chain; a 96.1 0.48 1.7E-05 55.2 21.6 231 24-338 47-303 (1630)
345 2woz_A Kelch repeat and BTB do 95.9 0.52 1.8E-05 46.3 19.1 178 179-369 25-234 (318)
346 2uvk_A YJHT; unknown function, 95.8 0.19 6.6E-06 50.4 16.0 178 213-398 65-327 (357)
347 2zwa_A Leucine carboxyl methyl 95.6 0.92 3.2E-05 50.1 21.3 176 213-396 451-674 (695)
348 2zwa_A Leucine carboxyl methyl 95.1 0.75 2.6E-05 50.9 18.5 109 12-124 396-523 (695)
349 2wg3_C Hedgehog-interacting pr 94.6 4.9 0.00017 41.6 24.8 109 5-114 16-160 (463)
350 3qhy_B Beta-lactamase inhibito 94.2 4 0.00014 39.1 19.8 160 204-386 103-263 (282)
351 2wg3_C Hedgehog-interacting pr 92.1 12 0.00042 38.6 27.9 56 47-103 14-79 (463)
352 4hvt_A Ritya.17583.B, post-pro 91.5 19 0.00066 39.5 23.0 98 222-323 318-429 (711)
353 3no0_A DNA gyrase subunit A; D 91.4 10 0.00034 36.1 20.0 155 202-366 23-196 (276)
354 3qhy_B Beta-lactamase inhibito 90.1 13 0.00045 35.4 17.9 88 223-324 158-246 (282)
355 3uc1_A DNA gyrase subunit A; D 89.9 15 0.00052 35.8 24.2 156 204-366 43-228 (327)
356 4gq2_M Nucleoporin NUP120; bet 87.9 32 0.0011 39.3 20.7 38 337-374 237-274 (950)
357 1wp5_A Topoisomerase IV; broke 86.6 25 0.00085 34.2 26.0 159 202-366 38-225 (323)
358 3l6v_A GYRA, DNA gyrase subuni 86.5 27 0.00094 34.7 29.3 159 202-366 45-265 (370)
359 3q6k_A 43.2 kDa salivary prote 85.3 32 0.0011 34.3 23.7 136 275-412 124-311 (381)
360 3no0_A DNA gyrase subunit A; D 84.7 27 0.00094 33.0 22.3 122 202-323 115-245 (276)
361 3uc1_A DNA gyrase subunit A; D 83.2 36 0.0012 33.2 26.2 151 213-365 108-278 (327)
362 4gq2_M Nucleoporin NUP120; bet 83.0 70 0.0024 36.4 21.1 40 253-292 236-275 (950)
363 1zi0_A DNA gyrase subunit A; b 82.1 37 0.0013 32.7 26.4 156 203-365 42-225 (307)
364 1suu_A DNA gyrase subunit A; t 80.4 43 0.0015 32.3 27.0 110 213-324 113-231 (312)
365 1suu_A DNA gyrase subunit A; t 78.4 50 0.0017 31.8 28.8 158 203-366 47-231 (312)
366 3b7f_A Glycosyl hydrolase, BNR 77.8 59 0.002 32.4 26.3 135 204-344 233-391 (394)
367 1wp5_A Topoisomerase IV; broke 75.2 62 0.0021 31.3 24.9 110 214-324 106-225 (323)
368 4hvt_A Ritya.17583.B, post-pro 74.3 1.1E+02 0.0036 33.6 22.4 148 256-406 243-428 (711)
369 3b7f_A Glycosyl hydrolase, BNR 72.2 81 0.0028 31.3 30.3 179 203-385 177-391 (394)
370 3kci_A Probable E3 ubiquitin-p 72.0 83 0.0028 31.3 29.0 149 214-366 168-345 (389)
371 2cn3_A Xyloglucanase, beta-1,4 71.8 1.2E+02 0.0042 33.2 31.6 108 3-111 23-151 (737)
372 1sqj_A OXG-RCBH, oligoxylogluc 70.3 1.4E+02 0.0047 33.2 28.1 109 2-111 14-140 (789)
373 3l6v_A GYRA, DNA gyrase subuni 68.1 98 0.0034 30.6 26.9 110 213-324 112-265 (370)
374 1zi0_A DNA gyrase subunit A; b 68.0 87 0.003 30.0 27.3 122 203-324 146-277 (307)
375 3zwu_A Alkaline phosphatase PH 67.0 17 0.0006 38.6 9.0 59 338-396 478-550 (592)
376 4a9v_A PHOX; hydrolase, beta-p 65.2 26 0.0009 36.9 9.7 63 336-398 476-552 (592)
377 4fhn_B Nucleoporin NUP120; pro 64.9 2.1E+02 0.0072 33.3 19.0 38 337-374 239-276 (1139)
378 4fhn_B Nucleoporin NUP120; pro 64.3 1.3E+02 0.0046 35.0 16.8 39 254-292 239-277 (1139)
379 3zwu_A Alkaline phosphatase PH 63.2 20 0.00068 38.2 8.6 58 6-64 479-548 (592)
380 3kci_A Probable E3 ubiquitin-p 61.3 1.3E+02 0.0045 29.8 22.2 190 213-407 61-292 (389)
381 3q6k_A 43.2 kDa salivary prote 56.6 1.6E+02 0.0055 29.2 27.2 78 203-283 220-306 (381)
382 4a9v_A PHOX; hydrolase, beta-p 55.7 44 0.0015 35.2 9.4 59 5-64 478-548 (592)
383 1k8k_G P16, ARP2/3 complex 16 49.2 19 0.00065 30.1 4.4 58 565-642 76-133 (151)
384 3f7f_A Nucleoporin NUP120; nuc 43.9 32 0.0011 37.3 6.3 37 337-375 223-259 (729)
385 3f7f_A Nucleoporin NUP120; nuc 40.1 3.9E+02 0.013 29.0 17.1 37 254-292 223-259 (729)
386 2qf9_A Putative secreted prote 36.5 72 0.0025 27.8 6.4 51 621-673 109-168 (179)
387 3teq_A Stromal interaction mol 34.3 70 0.0024 24.6 5.0 55 615-674 37-98 (101)
388 1zvt_A Topoisomerase IV subuni 33.4 2.9E+02 0.0099 25.4 15.2 120 203-324 33-163 (256)
389 1zvu_A Topoisomerase IV subuni 26.8 6.3E+02 0.021 27.3 15.5 29 205-233 604-633 (716)
390 3bt5_A Uncharacterized protein 25.5 1.5E+02 0.005 25.7 6.4 50 621-672 100-158 (177)
391 1deq_A Fibrinogen (alpha chain 24.5 1.7E+02 0.0058 28.5 7.0 66 603-669 86-153 (390)
392 3hx6_A Type 4 fimbrial biogene 24.1 6.4E+02 0.022 26.4 14.3 53 274-326 223-286 (570)
393 1zvt_A Topoisomerase IV subuni 23.9 4.2E+02 0.014 24.3 14.9 142 216-366 4-163 (256)
394 3al9_A Plexin-A2; beta-propell 21.2 2.6E+02 0.0089 29.2 8.5 68 294-361 400-476 (539)
395 3f1i_H Hepatocyte growth facto 21.0 1.6E+02 0.0055 22.2 4.8 46 608-664 48-93 (98)
396 1q47_A Semaphorin 3A; beta pro 21.0 3.3E+02 0.011 28.1 9.1 67 295-361 405-487 (495)
397 3dwl_G Actin-related protein 2 20.1 69 0.0024 26.8 3.0 58 565-642 77-134 (152)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.2e-47 Score=423.85 Aligned_cols=374 Identities=14% Similarity=0.206 Sum_probs=301.8
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.+.|++++|+|++..+|++|+.|++|++||..++++...+. +|.+.|.+++|+|++++|++++.|++|++||+..+
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g-- 222 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-- 222 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEECCCcEEEEECCCC--
Confidence 788999999999997579999999999999999999998887 99999999999999999999999999999998766
Q ss_pred CCceeEecc-------cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 81 DPRLLRFRS-------GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 81 ~~~~~~~~~-------~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
+.+..+. +|...|.+++|+|+|++|++++.|++|++||+.+++....+..... ....
T Consensus 223 --~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~--------------~~~~ 286 (611)
T 1nr0_A 223 --TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR--------------IEDQ 286 (611)
T ss_dssp --CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------------GGGC
T ss_pred --cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC--------------ccce
Confidence 4444442 7999999999999999999999999999999998887766532100 0000
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 233 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~ 233 (685)
...+.. + ...+.....++.+++|+..... ......+|...|.+++|+|+|+++++++.||.|++||+.+
T Consensus 287 ~~~~~~------~-~~~l~s~s~d~~i~~~~~~~~~----~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 287 QLGIIW------T-KQALVSISANGFINFVNPELGS----IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp EEEEEE------C-SSCEEEEETTCCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eEEEEE------c-CCEEEEEeCCCcEEEEeCCCCC----cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 011111 1 2335555667889999987543 2223347889999999999999999999999999999988
Q ss_pred Ccccccccccc----------------------------------c----------------------------------
Q 005656 234 GISRGSYLDMS----------------------------------E---------------------------------- 245 (685)
Q Consensus 234 ~~~~~~~~~~~----------------------------------~---------------------------------- 245 (685)
+.....+.... .
T Consensus 356 ~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~ 435 (611)
T 1nr0_A 356 GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 435 (611)
T ss_dssp CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence 75433220000 0
Q ss_pred ------cccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce--EEEeecCCceeEEEEeecCCEEEEEeCCCeE
Q 005656 246 ------RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 246 ------~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
.....|...+.+++|+|+++++++|+.|++|++||+.++.. .....+...|.+++|+|+|++|++++.|++|
T Consensus 436 ~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v 515 (611)
T 1nr0_A 436 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV 515 (611)
T ss_dssp EEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCE
Confidence 00002345688999999999999999999999999987654 2345567899999999999999999999999
Q ss_pred EEEEcCC-CeeEEE--EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-ee-eEEeec--cceEEEEEcCCCCe
Q 005656 318 RLFDVVA-LRMVRK--FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR-QI-DAIHVD--VSITALSLSPNMDV 390 (685)
Q Consensus 318 ~i~d~~~-~~~~~~--~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~-~i-~~~~~~--~~v~~v~~spdg~~ 390 (685)
++||+.+ ++.+.. +.+|...|++++|+|||++|++|+.|++|++||+.++. .+ ..+..| ..|++++|+|++.
T Consensus 516 ~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~- 594 (611)
T 1nr0_A 516 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT- 594 (611)
T ss_dssp EEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-
T ss_pred EEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-
Confidence 9999988 665543 34599999999999999999999999999999998865 33 444445 4599999999998
Q ss_pred EEEEEeCCCeEEEEEc
Q 005656 391 LATAHVDQNGVYLWVN 406 (685)
Q Consensus 391 Lat~~~d~~~I~lW~~ 406 (685)
|++++.|+ .|++|+.
T Consensus 595 l~s~~~D~-~i~lW~~ 609 (611)
T 1nr0_A 595 IVSAGQDS-NIKFWNV 609 (611)
T ss_dssp EEEEETTS-CEEEEEC
T ss_pred EEEecCCC-CEEEEec
Confidence 99999997 9999985
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-45 Score=408.76 Aligned_cols=376 Identities=15% Similarity=0.191 Sum_probs=296.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeCCCcEEEEecCC----CcEEEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASAD----NSIKMWI 74 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D----~~v~iWd 74 (685)
|++.|++++|+|||+ +||+|+.||+|+|||+.+++ ....+. +|.++|.+++|+|++++|++++.+ +.|++||
T Consensus 58 h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 58 HSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred CCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 789999999999999 99999999999999997543 445666 899999999999999999998865 3566664
Q ss_pred ecCCCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
.+ .....+.+|...|++++|+|++. .|++++.|++|++||..+.+....+.. ....
T Consensus 136 --~~----~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-----------------H~~~ 192 (611)
T 1nr0_A 136 --TG----TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-----------------HTKF 192 (611)
T ss_dssp --TC----CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-----------------CSSC
T ss_pred --CC----CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-----------------ccCc
Confidence 44 34556789999999999999987 599999999999999877665555431 1112
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec---CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR---PCPENPTAVKACTISACGNFAVLGTAGGWIERFN 230 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d 230 (685)
+..+... ++. ..++....++.+++|+............ ....|...|.+++|+|+|+++++|+.|+.|++||
T Consensus 193 V~~v~fs----pdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd 267 (611)
T 1nr0_A 193 VHSVRYN----PDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267 (611)
T ss_dssp EEEEEEC----TTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEC----CCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 2222211 122 3556667789999999876543222111 1126888999999999999999999999999999
Q ss_pred CCCCccccccccc-----------------------------------cccccCCCCcCEEEEEEcCCCCEEEEEECCCe
Q 005656 231 LQSGISRGSYLDM-----------------------------------SERSNYAHNGEVVGVACDSTNTLMISAGYHGD 275 (685)
Q Consensus 231 ~~~~~~~~~~~~~-----------------------------------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~ 275 (685)
+.++.....+... ......+|...|++++|+|++++|++++.|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~ 347 (611)
T 1nr0_A 268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH 347 (611)
T ss_dssp TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence 9988765443210 01123479999999999999999999999999
Q ss_pred EEEEECCCCceEEEe-----------------------------------------------------------------
Q 005656 276 IKVWDFKGRDLKSRW----------------------------------------------------------------- 290 (685)
Q Consensus 276 i~iwd~~~~~~~~~~----------------------------------------------------------------- 290 (685)
|++||+.++.....+
T Consensus 348 v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~ 427 (611)
T 1nr0_A 348 INSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 427 (611)
T ss_dssp EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE
T ss_pred EEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEE
Confidence 999998865433221
Q ss_pred ------------------ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee--EEEEecCCCCeEEEEEcCCCCEE
Q 005656 291 ------------------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWL 350 (685)
Q Consensus 291 ------------------~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~~~I~~l~~spdg~~l 350 (685)
.+...+.+++|+|+|++|++|+.|++|++||+.++.. +.. .+|...|++++|||||++|
T Consensus 428 ~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~l 506 (611)
T 1nr0_A 428 AACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFL 506 (611)
T ss_dssp EEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEE
T ss_pred EEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEE
Confidence 1113467899999999999999999999999988754 344 6899999999999999999
Q ss_pred EEEeCCCcEEEEEcCC-CceeeE--Ee-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 351 LSSGMDGSLRIWDVIL-ARQIDA--IH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 351 ~s~s~Dg~I~iwd~~~-~~~i~~--~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
++++.|++|++|++.+ ++++.. +. +...|++++|+|||++||+++.|+ .|++|+...
T Consensus 507 as~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~-~v~lW~~~~ 567 (611)
T 1nr0_A 507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN-SVIVWNMNK 567 (611)
T ss_dssp EEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTC
T ss_pred EEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCC-cEEEEECCC
Confidence 9999999999999988 665543 33 445599999999999999999997 999999653
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.8e-45 Score=404.64 Aligned_cols=357 Identities=22% Similarity=0.399 Sum_probs=297.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.+.|++++|+|+|+ +|++|+.||.|++||. +++.+..+. +|...|.+++|+|+++.|++++.|++|++|+.+.
T Consensus 220 ~~~~v~~~~~s~dg~-~l~~~~~d~~i~~w~~-~~~~~~~~~-~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--- 293 (577)
T 2ymu_A 220 HSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--- 293 (577)
T ss_dssp CSSCEEEEEECTTSS-CEEEEETTSCEEEECT-TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---
T ss_pred CCCCEEEEEECCCCC-EEEEEeCCCEEEEEeC-CCCEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---
Confidence 678999999999998 8999999999999996 456677777 8999999999999999999999999999998643
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+.+..+.+|..+|.+++|+|++++|++++.||+|++||...... ..+.. ...++..+..
T Consensus 294 --~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~-----------------~~~~v~~~~~- 352 (577)
T 2ymu_A 294 --QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTG-----------------HSSSVWGVAF- 352 (577)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEECC-----------------CSSCEEEEEE-
T ss_pred --cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEeC-----------------CCCCEEEEEE-
Confidence 56677889999999999999999999999999999999754432 22211 0112222111
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
.++. ..+.....++.+++|+.... .+.....+...|.+++|+|+|+++++|+.|+.|++||.. +.....+
T Consensus 353 ---s~~g-~~l~~~~~dg~v~~~~~~~~-----~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~ 422 (577)
T 2ymu_A 353 ---SPDG-QTIASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 422 (577)
T ss_dssp ---CTTS-SEEEEEETTSEEEEEETTCC-----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEE
T ss_pred ---CCCC-CEEEEEeCCCEEEEEcCCCC-----EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEe
Confidence 1222 34555667789999996532 222333678899999999999999999999999999964 4444443
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 320 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~ 320 (685)
. +|...|++++|+|+++++++++.|++|++||...........+...+.+++|+|++++|++++.|+.|++|
T Consensus 423 ~--------~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw 494 (577)
T 2ymu_A 423 T--------GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494 (577)
T ss_dssp E--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred c--------CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 3 89999999999999999999999999999997554333334456899999999999999999999999999
Q ss_pred EcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCC
Q 005656 321 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQN 399 (685)
Q Consensus 321 d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~ 399 (685)
|. ++++++.+.+|...|++++|+|||++|++++.||.|++||. +++++..+..|.. |++++|+|||++|++++.|+
T Consensus 495 ~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~- 571 (577)
T 2ymu_A 495 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK- 571 (577)
T ss_dssp ET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-
T ss_pred cC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-
Confidence 95 68889999999999999999999999999999999999995 6788888886654 99999999999999999997
Q ss_pred eEEEEE
Q 005656 400 GVYLWV 405 (685)
Q Consensus 400 ~I~lW~ 405 (685)
.|++|+
T Consensus 572 ~i~~Wd 577 (577)
T 2ymu_A 572 TVKLWN 577 (577)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999996
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-45 Score=390.37 Aligned_cols=283 Identities=18% Similarity=0.353 Sum_probs=263.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+++|++++|+|++. +|++|+.||.|+|||+.+++....+. +|.+.|.+++|+|++++|++|+.|++|++||+...
T Consensus 107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~-- 182 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-- 182 (410)
T ss_dssp CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--
T ss_pred cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Confidence 889999999999998 99999999999999999999999998 99999999999999999999999999999999776
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
.++..+.+|...|.+++|+|++++|++|+.|++|++||+.++.....+.
T Consensus 183 --~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~----------------------------- 231 (410)
T 1vyh_C 183 --ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT----------------------------- 231 (410)
T ss_dssp --CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----------------------------
T ss_pred --ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-----------------------------
Confidence 6788889999999999999999999999999999999998877655543
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
.|...+.+++++|+|+++++|+.||.|++||+.++.....+
T Consensus 232 ---------------------------------------~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~ 272 (410)
T 1vyh_C 232 ---------------------------------------GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272 (410)
T ss_dssp ---------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ---------------------------------------CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence 56788999999999999999999999999999998877665
Q ss_pred ccccccccCCCCcCEEEEEEcCC--------------------CCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEE
Q 005656 241 LDMSERSNYAHNGEVVGVACDST--------------------NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKI 299 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~--------------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~ 299 (685)
. +|...|.+++|+|+ +.++++|+.||+|++||+.++..+..+..+ ..|.++
T Consensus 273 ~--------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v 344 (410)
T 1vyh_C 273 R--------EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 344 (410)
T ss_dssp C--------CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred c--------CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEE
Confidence 4 89999999999996 678999999999999999999988887654 789999
Q ss_pred EEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 300 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 300 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
+|+|++++|++|+.|+.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|++|+++
T Consensus 345 ~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999863
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4e-45 Score=376.45 Aligned_cols=284 Identities=17% Similarity=0.360 Sum_probs=262.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.++|++++|+|||+ +|++|+.||.|+|||+.+++....+. .|...|.+++|+|++++|++++.|+.|++|++.....
T Consensus 54 H~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 54 HLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred CCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence 889999999999999 99999999999999999999999988 8999999999999999999999999999999987655
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
..+....+.+|...|.++.|++++. +++++.|++|++||+.+++....+.
T Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~----------------------------- 181 (340)
T 1got_B 132 NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT----------------------------- 181 (340)
T ss_dssp SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-----------------------------
T ss_pred cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-----------------------------
Confidence 5566777889999999999998874 8999999999999998876655442
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
.|...|.+++|+|+++++++|+.||.|++||+.++.....+
T Consensus 182 ---------------------------------------~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~ 222 (340)
T 1got_B 182 ---------------------------------------GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222 (340)
T ss_dssp ---------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred ---------------------------------------CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Confidence 67788999999999999999999999999999998877766
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
. +|...|.+++|+|++++|++++.||+|++||+++++.+..+.+. ..+.+++|+|++++|++|+.|+.|
T Consensus 223 ~--------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i 294 (340)
T 1got_B 223 T--------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294 (340)
T ss_dssp C--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred c--------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeE
Confidence 4 89999999999999999999999999999999998887777654 479999999999999999999999
Q ss_pred EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.||+|++||
T Consensus 295 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999999996
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=368.79 Aligned_cols=283 Identities=17% Similarity=0.338 Sum_probs=256.9
Q ss_pred CCCcEEEEEEccC----CCCEEEEEeCCCcEEEEeCCCCee--eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEE
Q 005656 1 MRGAVTALAFSSD----GQPLLASGASSGVISIWNLEKRRL--QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 74 (685)
Q Consensus 1 h~~~V~~l~fspd----g~~~latg~~dg~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd 74 (685)
|+++|++++|+|+ +. +|+||+.||.|+|||+.+++. ...+. +|...|.+++|+++++++++++.|++|++||
T Consensus 31 H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQWSLE-GHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp SSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeeeeec-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 8899999999985 45 899999999999999987764 34565 9999999999999999999999999999999
Q ss_pred ecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
+.++ +.+..+..|...+.+++|+|++++|++++.||.|++|++.+++....+.
T Consensus 109 ~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~----------------------- 161 (321)
T 3ow8_A 109 LENG----KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD----------------------- 161 (321)
T ss_dssp TTTT----EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-----------------------
T ss_pred CCCC----CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-----------------------
Confidence 9876 6777788899999999999999999999999999999998776544432
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 234 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~ 234 (685)
.+...+.+++|+|+|+++++|+.||.|++||+.++
T Consensus 162 ---------------------------------------------~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~ 196 (321)
T 3ow8_A 162 ---------------------------------------------TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 196 (321)
T ss_dssp ---------------------------------------------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ---------------------------------------------CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 44567999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeC
Q 005656 235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD 313 (685)
Q Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~ 313 (685)
+....+. +|...|.+++|+|++++|++++.||+|++||++++.....+..+ ..|.+++|+|++.+|++++.
T Consensus 197 ~~~~~~~--------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 197 KLLHTLE--------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EEEEEEC--------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cEEEEEc--------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 8777664 89999999999999999999999999999999999888877654 78999999999999999999
Q ss_pred CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 314 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
|++|++||+.+++++..+.+|...|++++|+|+|++|++++.||+|++||.+
T Consensus 269 D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 269 DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999975
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-44 Score=381.78 Aligned_cols=287 Identities=22% Similarity=0.359 Sum_probs=262.7
Q ss_pred eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656 38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 117 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~ 117 (685)
...+. +|.++|++++|+|++++|++|+.||+|++||+.++ .....+.+|...|.+++|+|++++|++|+.||+|+
T Consensus 101 ~~~l~-gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~----~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 101 KYALS-GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG----DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp SCEEE-CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC----CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred eEeec-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 34455 89999999999999999999999999999999877 56778889999999999999999999999999999
Q ss_pred EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656 118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 197 (685)
Q Consensus 118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 197 (685)
+||+.+.+....+.
T Consensus 176 iwd~~~~~~~~~~~------------------------------------------------------------------ 189 (410)
T 1vyh_C 176 LWDFQGFECIRTMH------------------------------------------------------------------ 189 (410)
T ss_dssp EEETTSSCEEECCC------------------------------------------------------------------
T ss_pred EEeCCCCceeEEEc------------------------------------------------------------------
Confidence 99997665443332
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656 198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 277 (685)
Q Consensus 198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~ 277 (685)
.|...|.+++|+|+++++++|+.||.|++||+.++.....+. +|...|.++.++|++.++++|+.||+|+
T Consensus 190 --~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--------~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 190 --GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--------GHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp --CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred --CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--------CCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 678889999999999999999999999999999998877665 8999999999999999999999999999
Q ss_pred EEECCCCceEEEeec-CCceeEEEEeec--------------------CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC
Q 005656 278 VWDFKGRDLKSRWEV-GCSLVKIVYHRV--------------------NGLLATVADDLVIRLFDVVALRMVRKFEGHTD 336 (685)
Q Consensus 278 iwd~~~~~~~~~~~~-~~~i~~~~~~~~--------------------~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 336 (685)
+||+.++.....+.. ...+.+++|+|+ +.+|++|+.|+.|++||+.+++++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 999999988877754 488999999996 66899999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
.|++++|+|+|++|++|+.||+|++||+.+++++..+..|.. |++++|+|++.+|++++.|+ .|++|+.
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~-~i~vW~~ 409 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWEC 409 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS-EEEEEC-
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEeC
Confidence 999999999999999999999999999999999999986655 99999999999999999997 9999975
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-44 Score=366.10 Aligned_cols=289 Identities=20% Similarity=0.296 Sum_probs=258.4
Q ss_pred eEEeecccccCeeEEEEeCC----CcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC
Q 005656 38 QSVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 113 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d 113 (685)
....+ +|.+.|++++|+|+ +.+|+||+.|++|++|++.... ......+.+|...|.+++|++++.++++++.|
T Consensus 25 ~~~~~-~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 25 FKQEQ-AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--LDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEETT-SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred eeecc-cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--eeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 34444 89999999999985 5699999999999999987652 13345678999999999999999999999999
Q ss_pred CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656 114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 193 (685)
Q Consensus 114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 193 (685)
++|++||+.+++....+.
T Consensus 102 ~~i~lWd~~~~~~~~~~~-------------------------------------------------------------- 119 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSID-------------------------------------------------------------- 119 (321)
T ss_dssp SEEEEEETTTTEEEEEEE--------------------------------------------------------------
T ss_pred CcEEEEECCCCCEEEEEe--------------------------------------------------------------
Confidence 999999998877655543
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC
Q 005656 194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 273 (685)
Q Consensus 194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 273 (685)
.+...+.+++|+|+++++++|+.+|.|++|++.++.....+. .|...|.+++|+|++++|++++.|
T Consensus 120 ------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~--------~~~~~v~~~~~spdg~~lasg~~d 185 (321)
T 3ow8_A 120 ------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD--------TRGKFILSIAYSPDGKYLASGAID 185 (321)
T ss_dssp ------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE--------CSSSCEEEEEECTTSSEEEEEETT
T ss_pred ------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec--------CCCceEEEEEECCCCCEEEEEcCC
Confidence 445667889999999999999999999999999988776654 788899999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 005656 274 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 352 (685)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s 352 (685)
|.|++||+.+++.+..+..+ .+|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++++|++
T Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE
Confidence 99999999999998888754 78999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 353 SGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 353 ~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
++.|++|++||+.+++++..+..+. .|.+++|+|+|++|++++.|+ .|++|+.
T Consensus 266 ~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~-~i~vwd~ 319 (321)
T 3ow8_A 266 SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ-EIHIYDC 319 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC-CEEEEEC
T ss_pred EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC-eEEEEeC
Confidence 9999999999999999999887654 599999999999999999997 9999985
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-43 Score=392.19 Aligned_cols=358 Identities=21% Similarity=0.374 Sum_probs=293.8
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+++|+|++|||||+ +||+|+.||.|+|||. +++++..+. +|.+.|++++|+|++++|++++.|++|++||...
T Consensus 15 H~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~l~-gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~--- 88 (577)
T 2ymu_A 15 HSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--- 88 (577)
T ss_dssp CSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEEEe-CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC---
Confidence 899999999999999 9999999999999995 678888888 9999999999999999999999999999999642
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+.+..+.+|..+|.+++|+|++++|++++.|+.+++|+........... ...++.....
T Consensus 89 --~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~- 147 (577)
T 2ymu_A 89 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG------------------HSSSVWGVAF- 147 (577)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECC------------------CSSCEEEEEE-
T ss_pred --CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccC------------------CCCceeeeee-
Confidence 5677888999999999999999999999999999999975443221111 0011111110
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
..+ ...+........+.+|......... ...+...+.+++++|+++++++|+.+|.|++||.. +.....+
T Consensus 148 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~ 217 (577)
T 2ymu_A 148 ---SPD-GQTIASASDDKTVKLWNRNGQLLQT-----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 217 (577)
T ss_dssp ---CTT-SSCEEEEETTSEEEEECTTSCEEEE-----EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEE
T ss_pred ---ecC-Cccceecccccceeccccceeeeee-----ccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEE
Confidence 111 2234555666777888755433222 22667889999999999999999999999999964 4444443
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
. +|...|.+++|+|+++++++++.|+.|++||... +.+..+. +...+.+++|+|+++.+++++.|+.|++
T Consensus 218 ~--------~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 218 T--------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp E--------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred e--------cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 3 8999999999999999999999999999999754 4454444 4588999999999999999999999999
Q ss_pred EEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-ccceEEEEEcCCCCeEEEEEeCC
Q 005656 320 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 320 ~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
||. +++.+..+.+|...|++++|+|++++|++++.||+|++||+.... +..+.. ...|.+++|+|+|++|++++.|+
T Consensus 289 w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 366 (577)
T 2ymu_A 289 WNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDK 366 (577)
T ss_dssp EET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 996 467788899999999999999999999999999999999986554 444544 45599999999999999999887
Q ss_pred CeEEEEEcC
Q 005656 399 NGVYLWVNR 407 (685)
Q Consensus 399 ~~I~lW~~~ 407 (685)
.|++|+..
T Consensus 367 -~v~~~~~~ 374 (577)
T 2ymu_A 367 -TVKLWNRN 374 (577)
T ss_dssp -EEEEEETT
T ss_pred -EEEEEcCC
Confidence 99999843
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.4e-43 Score=357.17 Aligned_cols=282 Identities=18% Similarity=0.256 Sum_probs=249.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|++.|++++|+|+|+ +|++|+.||.|++||+.++..+..+. +|..+|.+++|+|++++|++|+.|++|++||+.++
T Consensus 12 h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~-- 87 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-- 87 (304)
T ss_dssp ECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--
T ss_pred CCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC--
Confidence 788999999999998 99999999999999999999999998 89999999999999999999999999999999877
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+.+..+.+|...|.+++|+|++++|++|+.||+|++||+.++.....
T Consensus 88 --~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~------------------------------- 134 (304)
T 2ynn_A 88 --EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ------------------------------- 134 (304)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE-------------------------------
T ss_pred --cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh-------------------------------
Confidence 67778889999999999999999999999999999999865421100
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
T Consensus 135 -------------------------------------------------------------------------------- 134 (304)
T 2ynn_A 135 -------------------------------------------------------------------------------- 134 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeec--CCceeEEEEee--cCCEEEEEeCCC
Q 005656 241 LDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHR--VNGLLATVADDL 315 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~--~~~~l~~~~~dg 315 (685)
...+|...|.+++|+| ++..+++|+.||+|++||+.++.....+.. ...+..+.++| ++.+|++|+.|+
T Consensus 135 ------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~ 208 (304)
T 2ynn_A 135 ------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208 (304)
T ss_dssp ------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred ------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence 0117888999999998 578999999999999999987766555443 36788889887 677999999999
Q ss_pred eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCC--eEE
Q 005656 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMD--VLA 392 (685)
Q Consensus 316 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~--~La 392 (685)
+|++||+.+++++..+.+|...|++++|+|++++|++|+.||+|++||+.+++++..+..+. .+.+++|+|++. +++
T Consensus 209 ~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEE
T ss_pred eEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999998664 499999999886 577
Q ss_pred EEEeCCCeEEEEEcC
Q 005656 393 TAHVDQNGVYLWVNR 407 (685)
Q Consensus 393 t~~~d~~~I~lW~~~ 407 (685)
+++.| ++.+|+..
T Consensus 289 sg~~~--g~~~~~~~ 301 (304)
T 2ynn_A 289 SGFDN--GFTVLSLG 301 (304)
T ss_dssp EEETT--EEEEEECC
T ss_pred EecCC--ceEEEEec
Confidence 76644 78888743
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-43 Score=366.46 Aligned_cols=285 Identities=16% Similarity=0.240 Sum_probs=258.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC-
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD- 79 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~- 79 (685)
|+++|++++|+|+|+ +||||+.||.|+|||..+++....+. .|...|.+++|+|++.+|++++.|+.+++|++....
T Consensus 63 H~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHAVT-MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred CCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceEEe-cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence 889999999999998 99999999999999999999888887 899999999999999999999999999999986542
Q ss_pred -CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 80 -GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 80 -~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
........+.+|...|.+++|+|++..|++++.||+|++||+.+++....+.
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--------------------------- 193 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--------------------------- 193 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------------------------
T ss_pred ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc---------------------------
Confidence 2223455667899999999999999999999999999999998877655543
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc--CCCEEEEEecCCcEEEEECCCCcc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGIS 236 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~~~d~~~~~~ 236 (685)
.|...+.+++++| +|+++++|+.||.|++||++++..
T Consensus 194 -----------------------------------------~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~ 232 (354)
T 2pbi_B 194 -----------------------------------------GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232 (354)
T ss_dssp -----------------------------------------CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred -----------------------------------------CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 6678899999987 578999999999999999999988
Q ss_pred ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeC
Q 005656 237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVAD 313 (685)
Q Consensus 237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~ 313 (685)
...+. +|...|.+++|+|++.+|++++.|++|++||+++++....+..+ ..+.+++|+|++.+|++|+.
T Consensus 233 ~~~~~--------~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~ 304 (354)
T 2pbi_B 233 VQAFE--------THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304 (354)
T ss_dssp EEEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred EEEec--------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC
Confidence 77664 89999999999999999999999999999999988877666543 47889999999999999999
Q ss_pred CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 314 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
|+.|++||+.+++.+..+.+|.+.|++++|+|||++|++|+.||+|++|+
T Consensus 305 d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999999999999999999999999996
No 12
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-43 Score=375.59 Aligned_cols=338 Identities=15% Similarity=0.204 Sum_probs=283.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeC----CCCe------eeEEeec---------ccccCeeEEEEeCCCcEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNL----EKRR------LQSVIRE---------AHDNAIISLHFFANEPVL 61 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~----~~~~------~~~~~~~---------~h~~~V~~l~~sp~~~~l 61 (685)
|.++|++++|+|+|+.+||+|+.||.|++||+ .+++ ....+.. +|.+.|++++|+|++++|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 56899999999999778999999999999999 8887 4555441 168899999999999999
Q ss_pred EEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhh
Q 005656 62 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 141 (685)
Q Consensus 62 ~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 141 (685)
++++.||.|++|+. .+ ..+..+.+|..+|.+++|+|++++|++++.||.|++||+.+++....+.........
T Consensus 124 ~~~~~dg~i~i~~~-~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-- 196 (425)
T 1r5m_A 124 VTGVENGELRLWNK-TG----ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS-- 196 (425)
T ss_dssp EEEETTSCEEEEET-TS----CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred EEEeCCCeEEEEeC-CC----CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc--
Confidence 99999999999982 22 567778899999999999999999999999999999999888766655321110000
Q ss_pred ccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 005656 142 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 221 (685)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 221 (685)
............+.+++|++++ .+++++
T Consensus 197 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 224 (425)
T 1r5m_A 197 ---------------------------------------------------INAENHSGDGSLGVDVEWVDDD-KFVIPG 224 (425)
T ss_dssp ------------------------------------------------------------CCCBSCCEEEETT-EEEEEC
T ss_pred ---------------------------------------------------eeeccccCCcceeeEEEEcCCC-EEEEEc
Confidence 0000000223347888898875 588999
Q ss_pred cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEE
Q 005656 222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIV 300 (685)
Q Consensus 222 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~ 300 (685)
.+|.|++||+.++.....+. .|...|.+++|+|+++++++++.||.|++||+.+++....+. +...+.+++
T Consensus 225 ~~g~i~~~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 296 (425)
T 1r5m_A 225 PKGAIFVYQITEKTPTGKLI--------GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS 296 (425)
T ss_dssp GGGCEEEEETTCSSCSEEEC--------CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEE
T ss_pred CCCeEEEEEcCCCceeeeec--------cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEE
Confidence 99999999999987766654 899999999999999999999999999999999988887776 458999999
Q ss_pred EeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc------------
Q 005656 301 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR------------ 368 (685)
Q Consensus 301 ~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~------------ 368 (685)
|+|++ ++++++.|+.|++||+.+++.+..+..|...|++++|+|++++|++++.||.|++||+.++.
T Consensus 297 ~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 297 WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp EETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------
T ss_pred ECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccc
Confidence 99999 99999999999999999999999999999999999999999999999999999999999988
Q ss_pred --------eeeEEeec--c-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 369 --------QIDAIHVD--V-SITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 369 --------~i~~~~~~--~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.+..+..+ . .|++++|+|++++|++++.|+ .|++|+.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~ 424 (425)
T 1r5m_A 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ-EGSVVAIP 424 (425)
T ss_dssp ---CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS-CCEEEECC
T ss_pred ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc-eEEEEeec
Confidence 78888776 5 799999999999999999997 89999864
No 13
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.3e-43 Score=359.78 Aligned_cols=326 Identities=12% Similarity=0.198 Sum_probs=284.2
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.++|.+++|+|||+ +++++..++.+.+|+........... +|...|++++|+|++++|++++ ||.|++|++..+..
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccceec-cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 346799999999999 88888877778788766655554554 7999999999999999999999 99999999987643
Q ss_pred CCceeEe--cccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 81 DPRLLRF--RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 81 ~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
.. .+.. ..+|..+|.+++|+|++++|++++.||.|++||+.+++......
T Consensus 85 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------------------------- 136 (337)
T 1gxr_A 85 KS-PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE--------------------------- 136 (337)
T ss_dssp CS-CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE---------------------------
T ss_pred ee-eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee---------------------------
Confidence 22 2222 23799999999999999999999999999999997765211110
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
...+...+.+++|+|+++++++++.+|.|++||+.++....
T Consensus 137 ---------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 137 ---------------------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp ---------------------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ---------------------------------------cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence 00556789999999999999999999999999999988776
Q ss_pred ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEE
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 318 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~ 318 (685)
.+. .|...|.+++|+|+++++++++.||.|++||+++++....+.+...+.+++|+|+++++++++.++.|+
T Consensus 178 ~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~ 249 (337)
T 1gxr_A 178 QFQ--------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249 (337)
T ss_dssp EEC--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eee--------cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 654 799999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC
Q 005656 319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 319 i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~ 398 (685)
+||+.+++.. .+.+|...|++++|+|++++|++++.||.|++||+.+++.+....+...+++++|+|++++|++++.|+
T Consensus 250 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 250 VLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp EEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred EEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCC
Confidence 9999988754 577899999999999999999999999999999999999987777778899999999999999999987
Q ss_pred CeEEEEEc
Q 005656 399 NGVYLWVN 406 (685)
Q Consensus 399 ~~I~lW~~ 406 (685)
.|++|+.
T Consensus 329 -~i~iw~~ 335 (337)
T 1gxr_A 329 -KATVYEV 335 (337)
T ss_dssp -CEEEEEE
T ss_pred -eEEEEEE
Confidence 9999984
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-43 Score=371.83 Aligned_cols=296 Identities=16% Similarity=0.279 Sum_probs=259.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC-
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD- 79 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~- 79 (685)
|+++|++++|+|+|+ +|++|+.||+|+|||+.+++....+. +|...|.+++|+|++++|++|+.|+.+++|++....
T Consensus 65 H~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~ 142 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHAIK-LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD 142 (380)
T ss_dssp CSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEE-CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred cccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceEEe-cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence 889999999999998 99999999999999999999999998 999999999999999999999999999999987532
Q ss_pred --CCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656 80 --GDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 156 (685)
Q Consensus 80 --~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
+.......+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++....+...
T Consensus 143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~----------------------- 199 (380)
T 3iz6_a 143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE----------------------- 199 (380)
T ss_dssp CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-----------------------
T ss_pred ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-----------------------
Confidence 223445667899999999999997 557999999999999999887765544210
Q ss_pred eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCC-
Q 005656 157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSG- 234 (685)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~- 234 (685)
....|...+.++++++ +++++++|+.||.|++||++..
T Consensus 200 ----------------------------------------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 200 ----------------------------------------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp ----------------------------------------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred ----------------------------------------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence 0116778899999987 8899999999999999999843
Q ss_pred ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC--------CceeEEEEeecCC
Q 005656 235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNG 306 (685)
Q Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~~ 306 (685)
.....+. +|.+.|.+++|+|++++|++++.||+|++||++++..+..+..+ ..+.+++|+|+|+
T Consensus 240 ~~~~~~~--------~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 240 RAVRTYH--------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR 311 (380)
T ss_dssp CCCEEEC--------CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred cceEEEC--------CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC
Confidence 4444443 89999999999999999999999999999999999888776543 2488999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCeeEEEE----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 005656 307 LLATVADDLVIRLFDVVALRMVRKF----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 369 (685)
Q Consensus 307 ~l~~~~~dg~I~i~d~~~~~~~~~~----~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~ 369 (685)
+|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|++|+.||+|++|++...+.
T Consensus 312 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 9999999999999999999988887 68999999999999999999999999999999987643
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.6e-43 Score=355.17 Aligned_cols=284 Identities=18% Similarity=0.312 Sum_probs=251.8
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-----CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-----RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 75 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-----~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~ 75 (685)
|+++|++++|+|++..+|++|+.||+|++||+.+ +..+..+. +|...|.+++|+|++++|++++.|++|++||+
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 8999999999997745999999999999999864 34566777 99999999999999999999999999999999
Q ss_pred cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
.++ +.+..+.+|..+|.+++|+|++.+|++++.|++|++||+... ....+.
T Consensus 95 ~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~------------------------ 145 (319)
T 3frx_A 95 ATG----ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLL------------------------ 145 (319)
T ss_dssp TTT----EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEEC------------------------
T ss_pred CCC----CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEe------------------------
Confidence 877 777888899999999999999999999999999999998532 222211
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC------CCEEEEEecCCcEEEE
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC------GNFAVLGTAGGWIERF 229 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~dg~i~~~ 229 (685)
.|...+.++.++|. +..+++|+.||.|++|
T Consensus 146 --------------------------------------------~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w 181 (319)
T 3frx_A 146 --------------------------------------------GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181 (319)
T ss_dssp --------------------------------------------CCSSCEEEEEECCC------CCEEEEEETTSCEEEE
T ss_pred --------------------------------------------ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEE
Confidence 56778999999885 4589999999999999
Q ss_pred ECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEE
Q 005656 230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 309 (685)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 309 (685)
|+.++.....+. +|...|.+++|+|++++|++++.||+|++||+.+++.+..+..+..+.+++|+|++.+++
T Consensus 182 d~~~~~~~~~~~--------~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la 253 (319)
T 3frx_A 182 NLNQFQIEADFI--------GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253 (319)
T ss_dssp ETTTTEEEEEEC--------CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEE
T ss_pred ECCcchhheeec--------CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEE
Confidence 999887766554 899999999999999999999999999999999999999999889999999999999999
Q ss_pred EEeCCCeEEEEEcCCCeeEEEEec--------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656 310 TVADDLVIRLFDVVALRMVRKFEG--------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 310 ~~~~dg~I~i~d~~~~~~~~~~~~--------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~ 367 (685)
+++.+ .+++|++..+..+..+.. |...+.+++|+|||++|++|+.||.|++||+.++
T Consensus 254 ~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 254 AATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 88765 599999999888777653 4567999999999999999999999999998765
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.6e-43 Score=360.31 Aligned_cols=283 Identities=18% Similarity=0.235 Sum_probs=233.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC------------CeeeEEeecccccCeeEEEEeCCCcEEEEecCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------------RRLQSVIREAHDNAIISLHFFANEPVLMSASADN 68 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~------------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~ 68 (685)
|.+.|++++|+|||+ +|++++ |+++++||... +...... .|..+|.+++|+|++ .|++|+.||
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV--QTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE--EESSCEEEEEEETTT-EEEEEETTS
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeeeeccccccCCcceeeeee--ccCCCEEEEEEeCCC-eEEEEECCC
Confidence 567899999999999 888777 77788887321 1111222 467889999999986 688999999
Q ss_pred cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 148 (685)
Q Consensus 69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (685)
+|++||+.++...........+|...|++++|+|+|++|++|+.||+|++||+.+++....+
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~------------------ 165 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY------------------ 165 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE------------------
Confidence 99999998875433333445689999999999999999999999999999998665433222
Q ss_pred cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656 149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER 228 (685)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~ 228 (685)
T Consensus 166 -------------------------------------------------------------------------------- 165 (344)
T 4gqb_B 166 -------------------------------------------------------------------------------- 165 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeec---CCceeEEEEeec
Q 005656 229 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRV 304 (685)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~ 304 (685)
.+|...|.+++|++++ .++++++.||+|++||+++++....+.. ...+.+++|+|+
T Consensus 166 --------------------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 166 --------------------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ 225 (344)
T ss_dssp --------------------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred --------------------cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence 1789999999999987 4789999999999999999988877653 356899999995
Q ss_pred -CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEE
Q 005656 305 -NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITAL 382 (685)
Q Consensus 305 -~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v 382 (685)
++++++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++|+.|++|+|||+.+++++....+...|+++
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v 305 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDA 305 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEE
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEE
Confidence 4589999999999999999999999999999999999999998 58999999999999999999877654455669999
Q ss_pred EEcCCCCe-EEEEEeCCCeEEEEEcC
Q 005656 383 SLSPNMDV-LATAHVDQNGVYLWVNR 407 (685)
Q Consensus 383 ~~spdg~~-Lat~~~d~~~I~lW~~~ 407 (685)
+|+|+++. |++++.|+ .|++|+..
T Consensus 306 ~~sp~~~~llas~s~D~-~v~~w~v~ 330 (344)
T 4gqb_B 306 TWSPLNHSLLTTVGWDH-QVVHHVVP 330 (344)
T ss_dssp EECSSSTTEEEEEETTS-CEEEEECC
T ss_pred EEeCCCCeEEEEEcCCC-eEEEEECC
Confidence 99999875 66788887 99999864
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-43 Score=367.40 Aligned_cols=321 Identities=17% Similarity=0.195 Sum_probs=243.6
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC------CCcEEEEEecCCCC
Q 005656 7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA------DNSIKMWIFDTTDG 80 (685)
Q Consensus 7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~------D~~v~iWd~~~~~~ 80 (685)
.+.+.+++. ++.++.+.....|++....+ . +|...|++++|+|||++|++++. |++|++|+...+..
T Consensus 10 g~d~g~~~~--~~~~~g~~~~~~w~~p~~~p----~-~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~ 82 (357)
T 4g56_B 10 GVDLGTENL--YFQSNGSSKGSAWGRPVTAP----A-CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP 82 (357)
T ss_dssp -------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---
T ss_pred CCCCCccce--EEecCCCccccccCCCCCCc----c-cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc
Confidence 344555554 44445567789998764332 2 79999999999999999999998 67888887766544
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
.........+|...|.+++|+|++. +++++.||+|++||+.+++.......
T Consensus 83 ~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~---------------------------- 133 (357)
T 4g56_B 83 NESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKF---------------------------- 133 (357)
T ss_dssp CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCE----------------------------
T ss_pred ceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEee----------------------------
Confidence 4444445567999999999999985 66788899999999977653322110
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
....|...|.+++|+|+|+++++|+.||.|++||+.++.....+
T Consensus 134 ------------------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~ 177 (357)
T 4g56_B 134 ------------------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY 177 (357)
T ss_dssp ------------------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ------------------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 00167889999999999999999999999999999999887776
Q ss_pred ccccccccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEeec---CCceeEEEEeecC-CEEEEEeCCC
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVN-GLLATVADDL 315 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~-~~l~~~~~dg 315 (685)
. +|...|++++|++++. ++++++.||+|++||+++++....+.. ...+.+++|+|++ .+|++|+.|+
T Consensus 178 ~--------~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 178 N--------AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp C--------CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred c--------CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 5 8999999999999874 789999999999999999887765543 3679999999985 5899999999
Q ss_pred eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcC-CCCeEEE
Q 005656 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSP-NMDVLAT 393 (685)
Q Consensus 316 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~sp-dg~~Lat 393 (685)
.|++||+.+++.++.+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++++..+.+...|++++|+| ++.+|++
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEE
Confidence 99999999999999999999999999999987 589999999999999999999988887777799999999 7999999
Q ss_pred EEeCCCeEEEEEcCC
Q 005656 394 AHVDQNGVYLWVNRC 408 (685)
Q Consensus 394 ~~~d~~~I~lW~~~~ 408 (685)
++.|+ .|++|+...
T Consensus 330 ~s~Dg-~v~iW~~~~ 343 (357)
T 4g56_B 330 VGWDH-KVLHHHLPS 343 (357)
T ss_dssp EETTS-CEEEEECC-
T ss_pred EcCCC-eEEEEECCC
Confidence 99997 999998643
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3e-42 Score=354.97 Aligned_cols=292 Identities=19% Similarity=0.317 Sum_probs=256.9
Q ss_pred CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
.+....+. +|.+.|++++|+|++++|++++.||+|++||+.++ ..+..+..|...|.+++|+|++++|++++.|+
T Consensus 45 ~~~~~~l~-gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 45 MRTRRTLR-GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT----NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC----CEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred chhheeec-CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC----CcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence 34556777 99999999999999999999999999999998776 66777788999999999999999999999999
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
.+++|++.+........
T Consensus 120 ~v~iw~~~~~~~~~~~~--------------------------------------------------------------- 136 (340)
T 1got_B 120 ICSIYNLKTREGNVRVS--------------------------------------------------------------- 136 (340)
T ss_dssp EEEEEETTTCSBSCEEE---------------------------------------------------------------
T ss_pred eEEEEECccCCCcceeE---------------------------------------------------------------
Confidence 99999986543211110
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656 195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 274 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg 274 (685)
.....|...+.++.|++++. +++++.||.|++||+.++.....+. +|.+.|.+++|+|+++++++|+.||
T Consensus 137 -~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~sg~~d~ 206 (340)
T 1got_B 137 -RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT--------GHTGDVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp -EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc--------CCCCceEEEEECCCCCEEEEEeCCC
Confidence 00116778899999998875 8899999999999999998877664 8999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec--CCCCeEEEEEcCCCCEEE
Q 005656 275 DIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLL 351 (685)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~spdg~~l~ 351 (685)
+|++||++++.....+.. ...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.. +...|++++|+|+|++|+
T Consensus 207 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE
Confidence 999999999998888765 47899999999999999999999999999999988877753 335799999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 352 SSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 352 s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+|+.||.|++||+.+++.+..+..|.. |++++|+|+|.+|++++.|+ .|+||+
T Consensus 287 ~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~-~i~iWd 340 (340)
T 1got_B 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS-FLKIWN 340 (340)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-CEEEEC
T ss_pred EECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc-cEEecC
Confidence 999999999999999999988886654 99999999999999999997 999995
No 19
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.3e-43 Score=361.69 Aligned_cols=290 Identities=14% Similarity=0.212 Sum_probs=239.8
Q ss_pred CCCcEEEEEEccCCCCEEEEEeC------CCcEEEEeCCCCeeeE----EeecccccCeeEEEEeCCCcEEEEecCCCcE
Q 005656 1 MRGAVTALAFSSDGQPLLASGAS------SGVISIWNLEKRRLQS----VIREAHDNAIISLHFFANEPVLMSASADNSI 70 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~------dg~I~vwd~~~~~~~~----~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v 70 (685)
|++.|++++|||||+ +||+|+. ||.|++|+..++.... ... +|...|++++|+|++.+ ++++.||+|
T Consensus 41 H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~s~d~~~-l~~s~dg~v 117 (357)
T 4g56_B 41 MEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGV-QTEAGVTDVAWVSEKGI-LVASDSGAV 117 (357)
T ss_dssp CCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEE-ECSSCEEEEEEETTTEE-EEEETTSCE
T ss_pred ccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEecccC-CCCCCEEEEEEcCCCCE-EEEECCCEE
Confidence 788999999999999 9999987 7889999988765432 223 68999999999999865 567789999
Q ss_pred EEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccc
Q 005656 71 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK 150 (685)
Q Consensus 71 ~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (685)
++||+.++...........+|...|++++|+|++++|++++.||+|++||+.+++....+.
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~------------------- 178 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN------------------- 178 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-------------------
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-------------------
Confidence 9999987654333334456899999999999999999999999999999998877655543
Q ss_pred cCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEE
Q 005656 151 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERF 229 (685)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~~~ 229 (685)
.|...|.+++|++++. .+++++.||.|++|
T Consensus 179 -------------------------------------------------~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~w 209 (357)
T 4g56_B 179 -------------------------------------------------AHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209 (357)
T ss_dssp -------------------------------------------------CCSSCEEEEEECTTCSSCEEEEETTSCEEEC
T ss_pred -------------------------------------------------CCCCCEEEEEEccCCCceeeeeccCCceEEE
Confidence 6778899999999885 78999999999999
Q ss_pred ECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecC-C
Q 005656 230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN-G 306 (685)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~-~ 306 (685)
|+++++....+. ...|...+.+++|+|++ .++++|+.|+.|++||+++++....+..+ ..|.+++|+|++ +
T Consensus 210 d~~~~~~~~~~~------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 283 (357)
T 4g56_B 210 DTRKPKPATRID------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSP 283 (357)
T ss_dssp CTTSSSCBCBCC------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSC
T ss_pred ECCCCceeeeee------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCC
Confidence 999987765542 22677889999999975 68889999999999999999888887654 889999999987 5
Q ss_pred EEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCc
Q 005656 307 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 307 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
+|++|+.|++|+|||+.++++++.+ +|.+.|++++|+| |+++|++++.||+|++|++++..
T Consensus 284 ~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 284 FLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 8999999999999999999887765 7999999999998 89999999999999999997643
No 20
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-41 Score=344.68 Aligned_cols=284 Identities=20% Similarity=0.372 Sum_probs=254.9
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+++|++++|+|+|+ +||+|+.||.|++|++.+++....+. +|...|.+++|+|++++|++++.|+.|++||+..+
T Consensus 22 h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-- 97 (312)
T 4ery_A 22 HTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-- 97 (312)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred cCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--
Confidence 789999999999999 99999999999999999999998887 99999999999999999999999999999999876
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+.+..+.+|...|.++.|+|++++|++++.||.|++||+.+++....+.
T Consensus 98 --~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------------- 146 (312)
T 4ery_A 98 --KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------------------------- 146 (312)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-----------------------------
T ss_pred --cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-----------------------------
Confidence 6777888999999999999999999999999999999998776554442
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
.+...+.+++|+|+++++++|+.||.|++||+.++.....+
T Consensus 147 ---------------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 187 (312)
T 4ery_A 147 ---------------------------------------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187 (312)
T ss_dssp ---------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ---------------------------------------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE
Confidence 56778999999999999999999999999999998776654
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC----ceeEEEEeecCCEEEEEeCCCe
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----SLVKIVYHRVNGLLATVADDLV 316 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~ 316 (685)
.. .+...+..++|+|+++++++++.||.|++||+.+++....+..+. .+......+++.++++|+.||.
T Consensus 188 ~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 260 (312)
T 4ery_A 188 ID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 260 (312)
T ss_dssp CC-------SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC
T ss_pred ec-------cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE
Confidence 32 677889999999999999999999999999999999888776542 1222333467889999999999
Q ss_pred EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 005656 317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG--MDGSLRIWDVI 365 (685)
Q Consensus 317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s--~Dg~I~iwd~~ 365 (685)
|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|++|++|+..
T Consensus 261 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 261 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999999999999999999987 69999999864
No 21
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-42 Score=354.07 Aligned_cols=298 Identities=17% Similarity=0.237 Sum_probs=243.0
Q ss_pred CCC-cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee--EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC
Q 005656 1 MRG-AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ--SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 77 (685)
Q Consensus 1 h~~-~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~ 77 (685)
|.+ .|++++|+|+|+ +||+|+.||.|+|||+.++... ..+..+|.+.|.+++|+|++++|++++.|++|++|++..
T Consensus 14 h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp STTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred CCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 555 899999999999 9999999999999999887643 333348999999999999999999999999999999876
Q ss_pred CCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 78 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
.. ...+..+.+|..+|.+++|+|++++|++++.|++|++||+..+.....+.
T Consensus 93 ~~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------------------------- 144 (345)
T 3fm0_A 93 DD--FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS-------------------------- 144 (345)
T ss_dssp C---EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE--------------------------
T ss_pred CC--eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE--------------------------
Confidence 42 24567788999999999999999999999999999999997654321110
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
....|...|.+++|+|+++++++|+.||.|++||+.++...
T Consensus 145 ---------------------------------------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~ 185 (345)
T 3fm0_A 145 ---------------------------------------VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV 185 (345)
T ss_dssp ---------------------------------------EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE
T ss_pred ---------------------------------------EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE
Confidence 01166788999999999999999999999999999877533
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC---------------ceEEEee--cCCceeEEE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR---------------DLKSRWE--VGCSLVKIV 300 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~---------------~~~~~~~--~~~~i~~~~ 300 (685)
... ...+|...|.+++|+|++++|++++.||+|++||.... +.+..+. +...|.+++
T Consensus 186 ~~~------~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 186 CCA------TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259 (345)
T ss_dssp EEE------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred EEE------EecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEE
Confidence 211 12389999999999999999999999999999996321 1222332 347899999
Q ss_pred EeecCCEEEEEeCCCeEEEEEcCCCe---------eEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcee
Q 005656 301 YHRVNGLLATVADDLVIRLFDVVALR---------MVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 301 ~~~~~~~l~~~~~dg~I~i~d~~~~~---------~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
|+|++..|++++.|+.|++|+...+. ......+|...|++++|+|++ .+|++|+.||+|++|++.+++..
T Consensus 260 ~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 260 WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp ECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred EecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 99999999999999999999987542 122335899999999999998 59999999999999999987765
Q ss_pred eE
Q 005656 371 DA 372 (685)
Q Consensus 371 ~~ 372 (685)
..
T Consensus 340 ~~ 341 (345)
T 3fm0_A 340 HH 341 (345)
T ss_dssp --
T ss_pred cc
Confidence 43
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-41 Score=350.05 Aligned_cols=294 Identities=17% Similarity=0.322 Sum_probs=255.8
Q ss_pred eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656 36 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 115 (685)
Q Consensus 36 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~ 115 (685)
+....+. +|.+.|++++|+|++++|+||+.|++|++||..+. .....+..|...|.+++|+|+|.++++++.|+.
T Consensus 55 ~~~~~l~-gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~----~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 55 KTRRTLK-GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT----NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp CEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred EEEEEec-CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence 4566777 99999999999999999999999999999998766 556667789999999999999999999999999
Q ss_pred eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656 116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 195 (685)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 195 (685)
+++|++.......... ..
T Consensus 130 i~v~~~~~~~~~~~~~--------------------------------------------------------------~~ 147 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAA--------------------------------------------------------------KK 147 (354)
T ss_dssp EEEEECCCCTTCCSGG--------------------------------------------------------------GC
T ss_pred EEEEEEeccccccccc--------------------------------------------------------------cc
Confidence 9999986442110000 00
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC--CCCEEEEEECC
Q 005656 196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYH 273 (685)
Q Consensus 196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~d 273 (685)
.....|...+.+++|+|++..+++|+.||.|++||+.++.....+. +|...|.+++++| ++.+|++|+.|
T Consensus 148 ~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~g~~l~sgs~D 219 (354)
T 2pbi_B 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--------GHGADVLCLDLAPSETGNTFVSGGCD 219 (354)
T ss_dssp EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--------CCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence 0001567889999999999999999999999999999998877765 8999999999987 46899999999
Q ss_pred CeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC--CCCeEEEEEcCCCCEE
Q 005656 274 GDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWL 350 (685)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~~~I~~l~~spdg~~l 350 (685)
|+|++||+++++.+..+.. ...|.+++|+|++.+|++|+.|++|++||+++++.+..+..+ ...+++++|+|+|++|
T Consensus 220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299 (354)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence 9999999999998888765 478999999999999999999999999999999888777644 3478999999999999
Q ss_pred EEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 351 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 351 ~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
++|+.|++|++||+.+++.+..+..|.. |++++|+|+|++|++++.|+ .|++|+
T Consensus 300 ~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~-~v~vW~ 354 (354)
T 2pbi_B 300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH-TLRVWA 354 (354)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS-EEEEEC
T ss_pred EEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC-CEEecC
Confidence 9999999999999999999888876554 99999999999999999997 999995
No 23
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-43 Score=376.09 Aligned_cols=341 Identities=13% Similarity=0.164 Sum_probs=281.8
Q ss_pred CcEEEEEEccCCCCEEEEE----------eCCCcEEEEeCCCCe---eeEEeecccccCeeEEEEeCCCcEEEEecCCCc
Q 005656 3 GAVTALAFSSDGQPLLASG----------ASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEPVLMSASADNS 69 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg----------~~dg~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~ 69 (685)
..|++++|+|+|+.+||+| +.||.|+|||+.++. ....+ .|...|++++|+|++++|++++.||.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEccCCe
Confidence 3678999999997799999 889999999999875 33333 58999999999999999999999999
Q ss_pred EEEEEecCCCCCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656 70 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 148 (685)
Q Consensus 70 v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (685)
|++|++.........+..+.+|..+|.+++|+|+ +++|++++.||.|++||+.++.......
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----------------- 153 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY----------------- 153 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-----------------
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-----------------
Confidence 9999998743333577888899999999999998 8999999999999999997664110000
Q ss_pred cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEE
Q 005656 149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIE 227 (685)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~ 227 (685)
..........+...+.+++|+|+ +.++++++.+|.|+
T Consensus 154 ------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 191 (416)
T 2pm9_A 154 ------------------------------------------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS 191 (416)
T ss_dssp ------------------------------------------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEE
T ss_pred ------------------------------------------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEE
Confidence 00000011256788999999999 78999999999999
Q ss_pred EEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCC---eEEEEECCCC-ceEEEee--cCCceeEEE
Q 005656 228 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG---DIKVWDFKGR-DLKSRWE--VGCSLVKIV 300 (685)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg---~i~iwd~~~~-~~~~~~~--~~~~i~~~~ 300 (685)
+||+.++.....+.... ...+|...|.+++|+|++ .++++++.|+ .|++||++++ .....+. +...+.+++
T Consensus 192 iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 269 (416)
T 2pm9_A 192 IWDLKAKKEVIHLSYTS--PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD 269 (416)
T ss_dssp EEETTTTEEEEEECCCC--CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE
T ss_pred EEECCCCCcceEEeccc--cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEE
Confidence 99999988776654210 011348899999999997 6899999998 9999999986 5666665 568999999
Q ss_pred Eee-cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEe----
Q 005656 301 YHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIH---- 374 (685)
Q Consensus 301 ~~~-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~---- 374 (685)
|+| ++.+|++++.|+.|++||+.+++.+..+.+|...|++++|+|++ ++|++++.||.|++||+.++.......
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~ 349 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET 349 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccc
Confidence 999 89999999999999999999999999999999999999999999 899999999999999998765432211
Q ss_pred --------------------------------eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 375 --------------------------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 375 --------------------------------~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
+..++++++|+|+|++|++++.|+ .|+||+..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~-~v~~w~~~ 413 (416)
T 2pm9_A 350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK-GVSITNPK 413 (416)
T ss_dssp -----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS-CBCCBCCC
T ss_pred cccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC-eEEEEEec
Confidence 123477999999999999999887 99999754
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-41 Score=356.85 Aligned_cols=290 Identities=16% Similarity=0.311 Sum_probs=247.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccc------------------cCeeEEEEeCCCcEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD------------------NAIISLHFFANEPVLM 62 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~------------------~~V~~l~~sp~~~~l~ 62 (685)
|++.|+|++|+|||+ +||+|+ ++.++||++.+++.+..+. .|. ..|++++|+|++++|+
T Consensus 63 h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 63 HTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp CSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEEC-C-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEec-CccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 788999999999999 899987 6899999999999888776 443 2499999999999999
Q ss_pred EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656 63 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 142 (685)
Q Consensus 63 s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 142 (685)
+|+.|++|++||+..+ +.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....+
T Consensus 140 s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~------------ 203 (393)
T 1erj_A 140 TGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL------------ 203 (393)
T ss_dssp EEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE------------
T ss_pred EEcCCCeEEEEECCCC----cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE------------
Confidence 9999999999999876 777888999999999999999999999999999999999877654433
Q ss_pred cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEe
Q 005656 143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGT 221 (685)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~ 221 (685)
.+...+.+++++| +++++++|+
T Consensus 204 ---------------------------------------------------------~~~~~v~~~~~~~~~~~~l~~~s 226 (393)
T 1erj_A 204 ---------------------------------------------------------SIEDGVTTVAVSPGDGKYIAAGS 226 (393)
T ss_dssp ---------------------------------------------------------ECSSCEEEEEECSTTCCEEEEEE
T ss_pred ---------------------------------------------------------EcCCCcEEEEEECCCCCEEEEEc
Confidence 2245689999999 899999999
Q ss_pred cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc------------eEEE
Q 005656 222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------------LKSR 289 (685)
Q Consensus 222 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~ 289 (685)
.||.|++||+.++.....+.... ....+|...|.+++|+|++++|++++.||+|++||+.+.. ....
T Consensus 227 ~d~~v~iwd~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~ 305 (393)
T 1erj_A 227 LDRAVRVWDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305 (393)
T ss_dssp TTSCEEEEETTTCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred CCCcEEEEECCCCcEEEeecccc-cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence 99999999999987665542111 1123799999999999999999999999999999997532 2333
Q ss_pred ee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC------CCCEEEEEeCCCcEEEE
Q 005656 290 WE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE------DGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 290 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp------dg~~l~s~s~Dg~I~iw 362 (685)
+. +...|.+++++|++.+|++|+.|+.|++||+.+++++..+.+|.+.|.+++|++ ++++|++|+.||+|++|
T Consensus 306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385 (393)
T ss_dssp EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEEC
Confidence 33 447899999999999999999999999999999999999999999999999986 68899999999999999
Q ss_pred EcCCC
Q 005656 363 DVILA 367 (685)
Q Consensus 363 d~~~~ 367 (685)
++...
T Consensus 386 ~~~~~ 390 (393)
T 1erj_A 386 KYKKI 390 (393)
T ss_dssp EEEEC
T ss_pred ccccc
Confidence 98643
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-41 Score=350.30 Aligned_cols=286 Identities=18% Similarity=0.313 Sum_probs=241.3
Q ss_pred CCCcEEEEEE-----cc-CCCCEEEEEeCCCcEEEEeCCCC-------eeeEEeecccccCeeEEEEeCCCcEEEEecCC
Q 005656 1 MRGAVTALAF-----SS-DGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANEPVLMSASAD 67 (685)
Q Consensus 1 h~~~V~~l~f-----sp-dg~~~latg~~dg~I~vwd~~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D 67 (685)
|+++|++++| ++ +++ +||+|+.||+|++||+.+. .....+. +|...|.+++|+|++.++++++.|
T Consensus 20 H~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~s~s~D 97 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFAISSSWD 97 (343)
T ss_dssp CSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEEEEEETT
T ss_pred chhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEEEEEcCC
Confidence 8899999999 77 887 9999999999999998753 4456666 999999999999999999999999
Q ss_pred CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656 68 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 147 (685)
Q Consensus 68 ~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (685)
++|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+..... ....
T Consensus 98 ~~v~lwd~~~~----~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-~~~~---------------- 156 (343)
T 2xzm_R 98 KTLRLWDLRTG----TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSSA---------------- 156 (343)
T ss_dssp SEEEEEETTSS----CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-EECC----------------
T ss_pred CcEEEEECCCC----cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-eeee----------------
Confidence 99999999876 67778889999999999999999999999999999999863211 1110
Q ss_pred ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC----------CEE
Q 005656 148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG----------NFA 217 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----------~~l 217 (685)
....+...+.+++|+|++ .++
T Consensus 157 -------------------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l 187 (343)
T 2xzm_R 157 -------------------------------------------------EKENHSDWVSCVRYSPIMKSANKVQPFAPYF 187 (343)
T ss_dssp -------------------------------------------------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEE
T ss_pred -------------------------------------------------cccCCCceeeeeeeccccccccccCCCCCEE
Confidence 011566779999999887 799
Q ss_pred EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC-CCceEEEeecCCce
Q 005656 218 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSL 296 (685)
Q Consensus 218 ~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~i 296 (685)
++|+.||.|++||. .+.....+. +|...|.+++|+|++++|++|+.||.|++||+. .......+.....+
T Consensus 188 ~s~~~d~~i~iwd~-~~~~~~~~~--------~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 258 (343)
T 2xzm_R 188 ASVGWDGRLKVWNT-NFQIRYTFK--------AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTI 258 (343)
T ss_dssp EEEETTSEEEEEET-TTEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCE
T ss_pred EEEcCCCEEEEEcC-CCceeEEEc--------CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcE
Confidence 99999999999994 333333332 899999999999999999999999999999994 45555666667789
Q ss_pred eEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE--EEe-----------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 297 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVR--KFE-----------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~-----------~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
.+++|+|++.+++++ .|+.|++||+.+++... .+. +|...|++++|+|+|++|++|+.||+|++|+
T Consensus 259 ~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 259 NQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp EEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred EEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 999999999888765 57789999998875433 443 6888999999999999999999999999999
Q ss_pred cCCCc
Q 005656 364 VILAR 368 (685)
Q Consensus 364 ~~~~~ 368 (685)
+.++.
T Consensus 338 ~~~g~ 342 (343)
T 2xzm_R 338 FETSA 342 (343)
T ss_dssp EEEEE
T ss_pred EEccC
Confidence 87653
No 26
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.7e-42 Score=359.24 Aligned_cols=313 Identities=18% Similarity=0.283 Sum_probs=264.3
Q ss_pred CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC
Q 005656 25 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 104 (685)
Q Consensus 25 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 104 (685)
..+..|+.....+...+. +|.+.|++++|+|++++|+||+.|++|++||+.++ .....+.+|...|.+++|+|+|
T Consensus 46 ~~~~~~~~~~~~~~~~l~-gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~----~~~~~~~~h~~~v~~~~~s~~g 120 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQ-GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS----QKTHAIKLHCPWVMECAFAPNG 120 (380)
T ss_dssp GGCCCCCCCCCEEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT----EEEEEEECCCTTCCCCEECTTS
T ss_pred ccccccccceeEEeeccc-ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ccceEEecCCCCEEEEEECCCC
Confidence 445678888888888998 99999999999999999999999999999998876 6777888999999999999999
Q ss_pred CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEE
Q 005656 105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 184 (685)
Q Consensus 105 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 184 (685)
++|++|+.|+.+++|++.+.......
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~------------------------------------------------------ 146 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGN------------------------------------------------------ 146 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCS------------------------------------------------------
T ss_pred CEEEEeeCCCcEEEEECCCCccccCC------------------------------------------------------
Confidence 99999999999999998654211000
Q ss_pred cCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-
Q 005656 185 LQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS- 262 (685)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~- 262 (685)
........+|...+.++.|+|+ +..+++|+.||.|++||+.++.....+... ...+|...|.+++|++
T Consensus 147 -------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 147 -------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE---FPSGHTADVLSLSINSL 216 (380)
T ss_dssp -------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC---SSSSCCSCEEEEEECSS
T ss_pred -------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc---cCCCCccCeEEEEeecC
Confidence 0001112367888999999996 467999999999999999999876654211 1237999999999987
Q ss_pred CCCEEEEEECCCeEEEEECC-CCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC----
Q 005656 263 TNTLMISAGYHGDIKVWDFK-GRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD---- 336 (685)
Q Consensus 263 ~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~---- 336 (685)
++.++++|+.||+|++||++ .+..+..+. +...|.+++|+|++++|++|+.|++|++||+.+++.+..+..+..
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 296 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence 78899999999999999998 445666665 458899999999999999999999999999999999988875433
Q ss_pred ---CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE----e-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 337 ---RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI----H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 337 ---~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~----~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.|++++|+|+|++|++|+.||.|++||+.+++.+..+ . +...|++++|+|+|++|++|+.|+ .|++|+..
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-~i~iW~~~ 374 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-NLKIWAFS 374 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS-CEEEEECC
T ss_pred ccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC-CEEEEecC
Confidence 4899999999999999999999999999999888776 2 334599999999999999999997 99999854
No 27
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-40 Score=338.86 Aligned_cols=290 Identities=19% Similarity=0.306 Sum_probs=251.0
Q ss_pred eeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCC-CceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 37 LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
+..++. +|.+.|++++|+|++ ++|+||+.|++|++|++...... ...+..+.+|...|.+++|+|++++|++++.|+
T Consensus 9 l~~~l~-gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 9 LRGTLE-GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEc-cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 455676 999999999999965 79999999999999998754321 245677889999999999999999999999999
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
+|++||+.+++....+.
T Consensus 88 ~v~~wd~~~~~~~~~~~--------------------------------------------------------------- 104 (319)
T 3frx_A 88 TLRLWDVATGETYQRFV--------------------------------------------------------------- 104 (319)
T ss_dssp EEEEEETTTTEEEEEEE---------------------------------------------------------------
T ss_pred EEEEEECCCCCeeEEEc---------------------------------------------------------------
Confidence 99999998887655543
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC------CCEEE
Q 005656 195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST------NTLMI 268 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~~~l~ 268 (685)
.|...|.+++|+|++.++++|+.||.|++||+.... ...+ .+|...|.++.+.|. +..++
T Consensus 105 -----~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~-~~~~--------~~h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 105 -----GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATL--------LGHNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp -----CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE-EEEE--------CCCSSCEEEEEECCC------CCEEE
T ss_pred -----cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEE--------eccCCcEEEEEEccCCCCCCCccEEE
Confidence 678899999999999999999999999999997543 3333 289999999999985 44899
Q ss_pred EEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC
Q 005656 269 SAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG 347 (685)
Q Consensus 269 s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg 347 (685)
+++.|+.|++||+.+.+....+.. ...|.+++|+|++++|++|+.|+.|++||+.+++.+..+..+ ..|.+++|+|++
T Consensus 171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~ 249 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNR 249 (319)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSS
T ss_pred EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCC
Confidence 999999999999999888777654 488999999999999999999999999999999999999854 689999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeEEee---------ccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 348 KWLLSSGMDGSLRIWDVILARQIDAIHV---------DVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 348 ~~l~s~s~Dg~I~iwd~~~~~~i~~~~~---------~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.+|++++.+ .+++|++..+..+..+.. ...+.+++|+|||++|++++.|+ .|++|+..
T Consensus 250 ~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg-~i~vWd~~ 316 (319)
T 3frx_A 250 YWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN-VIRVWQVM 316 (319)
T ss_dssp SEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS-CEEEEEEE
T ss_pred CEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc-eEEEEEEe
Confidence 999988865 499999998887776642 23489999999999999999997 99999854
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5e-40 Score=334.24 Aligned_cols=290 Identities=20% Similarity=0.357 Sum_probs=257.0
Q ss_pred CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
......+. +|.+.|++++|+|++++|++++.|+.|++|++..+ +....+.+|...|.+++|+|++++|++++.||
T Consensus 13 ~~~~~~~~-gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 13 YALKFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp CEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeEEEEc-ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc----ccchhhccCCCceEEEEEcCCCCEEEEECCCC
Confidence 34556666 99999999999999999999999999999998766 66777889999999999999999999999999
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
.|++||+.+++....+.
T Consensus 88 ~i~vwd~~~~~~~~~~~--------------------------------------------------------------- 104 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLK--------------------------------------------------------------- 104 (312)
T ss_dssp EEEEEETTTCCEEEEEE---------------------------------------------------------------
T ss_pred EEEEEECCCCcEEEEEc---------------------------------------------------------------
Confidence 99999998776554442
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656 195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 274 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg 274 (685)
.+...+.+++|+|+++++++|+.||.|++||+.++.....+. .|...|.+++|+|+++++++++.||
T Consensus 105 -----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 105 -----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP--------AHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp -----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec--------CCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 567889999999999999999999999999999988776654 7999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEE--EEE-cCCCCE
Q 005656 275 DIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD--FCF-SEDGKW 349 (685)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~--l~~-spdg~~ 349 (685)
.|++||+.+++....+.. ..++..++|+|++++|++++.|+.|++||+.+++.+..+.+|...+.. ..+ .+++++
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence 999999999888776643 367899999999999999999999999999999999999998775433 233 468899
Q ss_pred EEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEE--eCCCeEEEEEc
Q 005656 350 LLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAH--VDQNGVYLWVN 406 (685)
Q Consensus 350 l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~--~d~~~I~lW~~ 406 (685)
|++|+.||.|++||+.+++.+..+..|.. |.+++|+|++.+|++++ .|+ .|++|..
T Consensus 252 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~-~i~~W~~ 310 (312)
T 4ery_A 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK-TIKLWKS 310 (312)
T ss_dssp EEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC-CEEEEEC
T ss_pred EEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc-cEEEecC
Confidence 99999999999999999999999886655 99999999999999998 365 9999974
No 29
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4e-41 Score=406.66 Aligned_cols=396 Identities=16% Similarity=0.236 Sum_probs=311.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.+..+. +|...|.+++|+| ++.++++++.|+.|++||+.++
T Consensus 656 h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 656 HEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733 (1249)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred CCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence 789999999999998 99999999999999999999999998 9999999999999 4559999999999999999877
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhh----ccccccccccC--
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK----LKMKEEELKLK-- 152 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-- 152 (685)
.....+.+|..+|++++|+|+++++++++.||+|++||+.++.....+........... .........+.
T Consensus 734 ----~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 809 (1249)
T 3sfz_A 734 ----ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809 (1249)
T ss_dssp ----SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT
T ss_pred ----chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC
Confidence 67778889999999999999999999999999999999998877665542211100000 00000000000
Q ss_pred ----------ceeeeec-----------------ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656 153 ----------PVIAFDC-----------------AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 205 (685)
Q Consensus 153 ----------~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 205 (685)
.+..+.. ....-......+..+..++.+.+|+....... .....|...|
T Consensus 810 g~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~----~~~~~h~~~v 885 (1249)
T 3sfz_A 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV----ADCRGHLSWV 885 (1249)
T ss_dssp SSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEE----EEECCCSSCE
T ss_pred CCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee----eecCCCccce
Confidence 0000000 00000112345667777889999998864332 2223677778
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEECCCCcccc-----------------------------------------------
Q 005656 206 KACTISACGNFAVLGTAGGWIERFNLQSGISRG----------------------------------------------- 238 (685)
Q Consensus 206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~----------------------------------------------- 238 (685)
.+++|+|+|+++++++.||.|++|++.++....
T Consensus 886 ~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 886 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence 888888888888888888888888754210000
Q ss_pred ---------------------cc---ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC
Q 005656 239 ---------------------SY---LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC 294 (685)
Q Consensus 239 ---------------------~~---~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (685)
.+ .........+|...|++++|+|+++++++++.||.|++||+.+++......+..
T Consensus 966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1045 (1249)
T 3sfz_A 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1045 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSS
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCC
Confidence 00 000011233799999999999999999999999999999999998887777789
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656 295 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 374 (685)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~ 374 (685)
.+.++.++|++ .+++++.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||+|++||+.+++++..+.
T Consensus 1046 ~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A 1046 TVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124 (1249)
T ss_dssp CEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC
T ss_pred cEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec
Confidence 99999999955 57788999999999999999999999999999999999999999999999999999999999988887
Q ss_pred eccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 375 VDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 375 ~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
.+.. |++++|+|+|++|++++.|+ .|++|+...
T Consensus 1125 ~h~~~v~~~~~s~dg~~lat~~~dg-~i~vwd~~~ 1158 (1249)
T 3sfz_A 1125 GHNGCVRCSAFSLDGILLATGDDNG-EIRIWNVSD 1158 (1249)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTS-CCCEEESSS
T ss_pred cCCCcEEEEEECCCCCEEEEEeCCC-EEEEEECCC
Confidence 6555 99999999999999999997 899998653
No 30
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1e-40 Score=372.53 Aligned_cols=375 Identities=9% Similarity=0.084 Sum_probs=294.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeeccccc---CeeEEEEeCC-CcEEEEecCCCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN---AIISLHFFAN-EPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~---~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~ 76 (685)
|.+.|++++|+|+++.++++|+.||.|++||+.+++....+. +|.. .|.+++|+|+ +++|++++.|+.|++||+.
T Consensus 159 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 159 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 678999999999998789999999999999999999999998 8999 9999999999 9999999999999999988
Q ss_pred CCCCCCceeEec-c---cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656 77 TTDGDPRLLRFR-S---GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 152 (685)
Q Consensus 77 ~~~~~~~~~~~~-~---~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (685)
.+ +.+..+ . +|..+|.+++|+ ++++|++++.||.|++||+.+++....+...... ...
T Consensus 238 ~~----~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-------------~~~ 299 (615)
T 1pgu_A 238 SG----EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ-------------LGN 299 (615)
T ss_dssp TC----CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-------------GGG
T ss_pred CC----CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc-------------ccC
Confidence 76 566666 5 899999999999 9999999999999999999988877666432100 000
Q ss_pred ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee-------------------------------ecCCCCC
Q 005656 153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI-------------------------------LRPCPEN 201 (685)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-------------------------------~~~~~~~ 201 (685)
.+...... ....+.+...++.+++|+.......... +. ..+
T Consensus 300 ~~~~~~~~------~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~--~~~ 371 (615)
T 1pgu_A 300 QQVGVVAT------GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMH--QDH 371 (615)
T ss_dssp CEEEEEEE------ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEE--CCC
T ss_pred ceeEEEeC------CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhc--Ccc
Confidence 01111000 1223444445556666665542211100 01 356
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc-----------------------ccc--cccccccCCCCcCEE
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG-----------------------SYL--DMSERSNYAHNGEVV 256 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~-----------------------~~~--~~~~~~~~~h~~~v~ 256 (685)
...|.++++ ++++.+++++.+|.|++||+.++.... .+. .........|...+.
T Consensus 372 ~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (615)
T 1pgu_A 372 SNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450 (615)
T ss_dssp CSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred cCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence 667777777 557788888888888888776433100 000 000001114778899
Q ss_pred EEEEcCCCCEEEEEEC-CCeEEEEECCCCceE-EEe-ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec
Q 005656 257 GVACDSTNTLMISAGY-HGDIKVWDFKGRDLK-SRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG 333 (685)
Q Consensus 257 ~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~-~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~ 333 (685)
+++|+ ++++++++. ||.|++||+.+++.. ..+ .+...+.+++|+|++++|++++.||.|++||+.+++.+..+.+
T Consensus 451 ~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 528 (615)
T 1pgu_A 451 AVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 528 (615)
T ss_dssp EEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred EEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec
Confidence 99999 889999999 999999999987764 333 3458899999999999999999999999999999999999988
Q ss_pred -CCCCeEEEEEcC----------CCCEEEEEeCCCcEEEEEcCCC-ceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCe
Q 005656 334 -HTDRITDFCFSE----------DGKWLLSSGMDGSLRIWDVILA-RQIDAIHVDV-SITALSLSPNMDVLATAHVDQNG 400 (685)
Q Consensus 334 -h~~~I~~l~~sp----------dg~~l~s~s~Dg~I~iwd~~~~-~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~ 400 (685)
|...|++++|+| ++++|++++.||.|++||+.++ +++..+..|. .|++++|+|+++ |++++.|+ .
T Consensus 529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~-~ 606 (615)
T 1pgu_A 529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA-C 606 (615)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS-C
T ss_pred CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCc-e
Confidence 999999999999 9999999999999999999998 7777776554 499999999999 99999997 9
Q ss_pred EEEEEcC
Q 005656 401 VYLWVNR 407 (685)
Q Consensus 401 I~lW~~~ 407 (685)
|++|+..
T Consensus 607 v~iw~~~ 613 (615)
T 1pgu_A 607 IKRWNVV 613 (615)
T ss_dssp EEEEEEC
T ss_pred EEEEeee
Confidence 9999864
No 31
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-40 Score=381.15 Aligned_cols=386 Identities=13% Similarity=0.118 Sum_probs=272.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.+.|++++|+|+|+ +||+|+.||.|+||+..+.+....+ .|..+|.+++|+| +++|++++.|++|++||+.++
T Consensus 16 h~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~-- 89 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ-- 89 (902)
T ss_dssp CSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC--
T ss_pred CCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC--
Confidence 788999999999999 9999999999999999888776654 5889999999999 889999999999999999876
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+++..+. |...|++++|+|++++|++|+.||+|++||+.++... .+............ .....++..+...
T Consensus 90 --~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~-----~~h~~~V~sl~~s 160 (902)
T 2oaj_A 90 --KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFP-----AARLSPIVSIQWN 160 (902)
T ss_dssp --SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCS-----SSCCCCCCEEEEE
T ss_pred --cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccccccccc-----ccCCCCeEEEEEc
Confidence 5555554 6789999999999999999999999999999877653 11110000000000 0111222222211
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecC--------------CCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP--------------CPENPTAVKACTISACGNFAVLGTAGGWI 226 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 226 (685)
++....+..+..++.+ +|++............ ...+...|.+++|+|+|+++++|+.||.|
T Consensus 161 ----p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i 235 (902)
T 2oaj_A 161 ----PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSL 235 (902)
T ss_dssp ----TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCE
T ss_pred ----cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeE
Confidence 1122456677788889 9999875433222110 11235779999999999999999999999
Q ss_pred EEEECCCCccccc--ccccc-c-------cccCCCCcCEEEEEEc----CCC-CEEE-----------------------
Q 005656 227 ERFNLQSGISRGS--YLDMS-E-------RSNYAHNGEVVGVACD----STN-TLMI----------------------- 268 (685)
Q Consensus 227 ~~~d~~~~~~~~~--~~~~~-~-------~~~~~h~~~v~~l~~~----~~~-~~l~----------------------- 268 (685)
++||+.+++.... +.... . .....|...|.+++|+ |++ ..++
T Consensus 236 ~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~ 315 (902)
T 2oaj_A 236 VFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR 315 (902)
T ss_dssp EEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC
T ss_pred EEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC
Confidence 9999998876432 10000 0 0000133456666663 222 2333
Q ss_pred -----------------------------------------------------EEECCCeEEEEECCCCceEEE------
Q 005656 269 -----------------------------------------------------SAGYHGDIKVWDFKGRDLKSR------ 289 (685)
Q Consensus 269 -----------------------------------------------------s~s~dg~i~iwd~~~~~~~~~------ 289 (685)
+++.||.|++||+.++.....
T Consensus 316 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~ 395 (902)
T 2oaj_A 316 YSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQ 395 (902)
T ss_dssp GGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCG
T ss_pred ccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCC
Confidence 334445566666544432211
Q ss_pred -ee-cCCceeE----------------------------------EEEeecCCEEEEEeCCCeEEEEEcCCCeeE----E
Q 005656 290 -WE-VGCSLVK----------------------------------IVYHRVNGLLATVADDLVIRLFDVVALRMV----R 329 (685)
Q Consensus 290 -~~-~~~~i~~----------------------------------~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~----~ 329 (685)
+. ++..+++ ++|+|++++|++|+.|++|++||+.++... .
T Consensus 396 ~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~ 475 (902)
T 2oaj_A 396 NLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASF 475 (902)
T ss_dssp GGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCE
T ss_pred cccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceE
Confidence 00 1122333 445788999999999999999999887421 1
Q ss_pred E--Ee-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc----------------------------------
Q 005656 330 K--FE-----GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR---------------------------------- 368 (685)
Q Consensus 330 ~--~~-----~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~---------------------------------- 368 (685)
. +. +|...|++++|+|||++||+|+.||+|++||+.+++
T Consensus 476 ~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (902)
T 2oaj_A 476 EVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRD 555 (902)
T ss_dssp EEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGG
T ss_pred EeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccc
Confidence 1 11 799999999999999999999999999999998763
Q ss_pred -----------eeeEEee-ccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 369 -----------QIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 369 -----------~i~~~~~-~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
++..+.. ...|++++||||| +||+|+.|+ .|+||+.+.
T Consensus 556 ~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~-tv~lwd~~~ 605 (902)
T 2oaj_A 556 RAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAG-SLMLIDRRG 605 (902)
T ss_dssp GCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTS-EEEEEETTT
T ss_pred cCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCC-cEEEEECCC
Confidence 2455554 4459999999999 999999987 999999654
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-40 Score=340.43 Aligned_cols=290 Identities=18% Similarity=0.275 Sum_probs=229.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eeeEEeecc-cccCeeEEEEeCCCcEEEEecCCCcEEEEEecC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDT 77 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~ 77 (685)
|+++|++++|+|+ +||+|+.||.|++||+..+ .....+..+ |.+.|.+++|+|++++|++++.|++|++|++..
T Consensus 13 h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 13 YKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp CSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred CCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence 8899999999986 8999999999999999875 455555224 999999999999999999999999999999864
Q ss_pred CC---CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 78 TD---GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 78 ~~---~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
.. .....+..+.+|...|.+++|+|++++|++|+.|++|++||+.........
T Consensus 90 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~------------------------ 145 (330)
T 2hes_X 90 SADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC------------------------ 145 (330)
T ss_dssp -----CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEE------------------------
T ss_pred CcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEE------------------------
Confidence 32 123566778899999999999999999999999999999998533110000
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 234 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~ 234 (685)
......|...|.+++|+|+++++++|+.||.|++||..++
T Consensus 146 ----------------------------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 146 ----------------------------------------ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp ----------------------------------------EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred ----------------------------------------EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 0011167788999999999999999999999999998766
Q ss_pred --ccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEECCCeEEEEECCCC--------ceEEEee--cCCceeEEE
Q 005656 235 --ISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGR--------DLKSRWE--VGCSLVKIV 300 (685)
Q Consensus 235 --~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~--~~~~i~~~~ 300 (685)
.....+ .+|.+.|.+++|+|+ +.++++++.|++|++||+.++ .....+. +...|.+++
T Consensus 186 ~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 257 (330)
T 2hes_X 186 DWECVAVL--------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVA 257 (330)
T ss_dssp EEEEEEEE--------CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEE
T ss_pred CeeEEEEc--------cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEE
Confidence 333333 289999999999998 678999999999999998754 2333333 457899999
Q ss_pred EeecCCEEEEEeCCCeEEEEEcCCCe--eEEE-EecCCC-CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCC
Q 005656 301 YHRVNGLLATVADDLVIRLFDVVALR--MVRK-FEGHTD-RITDFCFSE--DGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 301 ~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~-~~~h~~-~I~~l~~sp--dg~~l~s~s~Dg~I~iwd~~~ 366 (685)
|+++ .+|++++.||.|++||..+++ .+.. +.+|.. .|++++|+| ++++|++|+.||+|++||+.+
T Consensus 258 ~s~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 258 WGFN-GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ECTT-SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EcCC-CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9965 489999999999999998874 3333 357887 899999999 789999999999999999865
No 33
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.7e-40 Score=397.32 Aligned_cols=370 Identities=18% Similarity=0.272 Sum_probs=305.2
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.+.|++++|+|+|+ ++|+|+.||.|++||+.+++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+.++
T Consensus 614 h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-- 689 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-- 689 (1249)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred ccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--
Confidence 789999999999999 99999999999999999999999998 99999999999999999999999999999999877
Q ss_pred CCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
+.+..+.+|...|.+++|+| ++.++++++.||.|++||+.++.....+... ..++..+.
T Consensus 690 --~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h-----------------~~~v~~~~ 750 (1249)
T 3sfz_A 690 --KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH-----------------TNSVNHCR 750 (1249)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC-----------------SSCEEEEE
T ss_pred --ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC-----------------CCCEEEEE
Confidence 77888889999999999999 4568999999999999999988876665321 11121111
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCce---------------------------------------------
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH--------------------------------------------- 193 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--------------------------------------------- 193 (685)
.. ++ ...+.....++.+++|++........
T Consensus 751 ~s----p~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d 825 (1249)
T 3sfz_A 751 FS----PD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 825 (1249)
T ss_dssp EC----SS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred Ee----cC-CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 11 11 12344444556666666543321100
Q ss_pred ------eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE
Q 005656 194 ------ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM 267 (685)
Q Consensus 194 ------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 267 (685)
.......+...+.+++|+|+++++++|+.+|.|++||+.++.....+. +|.+.|.+++|+|+++++
T Consensus 826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--------~h~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR--------GHLSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp TTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEE
T ss_pred ecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC--------CCccceEEEEECCCCCEE
Confidence 001112567789999999999999999999999999999988776664 899999999999999999
Q ss_pred EEEECCCeEEEEECCCCce--------------------------------------EEEeecCCceeEEEEeecCCEEE
Q 005656 268 ISAGYHGDIKVWDFKGRDL--------------------------------------KSRWEVGCSLVKIVYHRVNGLLA 309 (685)
Q Consensus 268 ~s~s~dg~i~iwd~~~~~~--------------------------------------~~~~~~~~~i~~~~~~~~~~~l~ 309 (685)
++++.||.|++||+.+... .........+.+++++|++++++
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 977 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE
T ss_pred EEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE
Confidence 9999999999999753110 00111235789999999999999
Q ss_pred EEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC
Q 005656 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMD 389 (685)
Q Consensus 310 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~ 389 (685)
+|+.+|.|++||+.+++.+..+.+|...|++++|+|+|++|++++.||.|++||+.+++......+...|.+++|+|++.
T Consensus 978 ~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 1057 (1249)
T 3sfz_A 978 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR 1057 (1249)
T ss_dssp EEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSE
T ss_pred EEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998887666677799999999765
Q ss_pred eEEEEEeCCCeEEEEEcCC
Q 005656 390 VLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 390 ~Lat~~~d~~~I~lW~~~~ 408 (685)
+++++.|+ .|++|+...
T Consensus 1058 -l~~~~~dg-~v~vwd~~~ 1074 (1249)
T 3sfz_A 1058 -LLSWSFDG-TVKVWNVIT 1074 (1249)
T ss_dssp -EEEEESSS-EEEEEETTT
T ss_pred -EEEEECCC-cEEEEECCC
Confidence 67777786 999999653
No 34
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=338.81 Aligned_cols=300 Identities=16% Similarity=0.206 Sum_probs=242.5
Q ss_pred CeeeEEeeccccc-CeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC
Q 005656 35 RRLQSVIREAHDN-AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 113 (685)
Q Consensus 35 ~~~~~~~~~~h~~-~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d 113 (685)
.+++.++. +|.+ .|.+++|+|+|++|++|+.|++|++|++..+... .......+|...|.+++|+|++++|++|+.|
T Consensus 5 ~~~~~~~~-~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 5 LVLLGRVP-AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI-CKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp EEEEEEEC-CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE-EEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeeeec-CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce-eeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence 34567777 8887 9999999999999999999999999998765210 1122346899999999999999999999999
Q ss_pred CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656 114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 193 (685)
Q Consensus 114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 193 (685)
+++++|++..+......
T Consensus 83 ~~v~iw~~~~~~~~~~~--------------------------------------------------------------- 99 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVT--------------------------------------------------------------- 99 (345)
T ss_dssp SCEEEEEECCC-EEEEE---------------------------------------------------------------
T ss_pred CcEEEEEccCCCeEEEE---------------------------------------------------------------
Confidence 99999998655321100
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC
Q 005656 194 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 273 (685)
Q Consensus 194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 273 (685)
...+|...|.+++|+|+|+++++|+.||.|++||+.++....... ...+|...|.+++|+|++.+|++++.|
T Consensus 100 ---~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-----~~~~h~~~v~~~~~~p~~~~l~s~s~d 171 (345)
T 3fm0_A 100 ---TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS-----VLNSHTQDVKHVVWHPSQELLASASYD 171 (345)
T ss_dssp ---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE-----EECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred ---EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE-----EecCcCCCeEEEEECCCCCEEEEEeCC
Confidence 111678899999999999999999999999999998765322111 223899999999999999999999999
Q ss_pred CeEEEEECCCCceE--EEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC---------------CeeEEEEec-C
Q 005656 274 GDIKVWDFKGRDLK--SRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---------------LRMVRKFEG-H 334 (685)
Q Consensus 274 g~i~iwd~~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~---------------~~~~~~~~~-h 334 (685)
++|++||..++... ..+. +...|.+++|+|++++|++|+.|++|++||... .+++..+.+ |
T Consensus 172 ~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 251 (345)
T 3fm0_A 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC
T ss_pred CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCC
Confidence 99999999887533 3444 448899999999999999999999999999632 244556665 8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce----eeE-----Ee-eccceEEEEEcCCCC-eEEEEEeCCCeEEE
Q 005656 335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ----IDA-----IH-VDVSITALSLSPNMD-VLATAHVDQNGVYL 403 (685)
Q Consensus 335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~----i~~-----~~-~~~~v~~v~~spdg~-~Lat~~~d~~~I~l 403 (685)
...|.+++|+|++..|++++.|+.|++|+...+.. ... .. +...|++++|+|++. +||+++.|+ .|++
T Consensus 252 ~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg-~v~~ 330 (345)
T 3fm0_A 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG-EVAF 330 (345)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS-CEEE
T ss_pred CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC-cEEE
Confidence 89999999999999999999999999999876431 111 11 234599999999984 899999887 9999
Q ss_pred EEcCC
Q 005656 404 WVNRC 408 (685)
Q Consensus 404 W~~~~ 408 (685)
|+...
T Consensus 331 W~~~~ 335 (345)
T 3fm0_A 331 WKYQR 335 (345)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 98653
No 35
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.8e-40 Score=336.07 Aligned_cols=287 Identities=19% Similarity=0.321 Sum_probs=249.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-----eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 75 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~-----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~ 75 (685)
|+++|++|+|+|++..+||||+.||+|+|||+.+.+ +...+. +|...|.+++|+|++++|++++.|+.|++|+.
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~ 115 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence 899999999999854499999999999999987643 455666 89999999999999999999999999999998
Q ss_pred cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
... ........+...+..+.+++++.+|++++.|+.+++||+.........
T Consensus 116 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~------------------------- 166 (340)
T 4aow_A 116 TTG----TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ------------------------- 166 (340)
T ss_dssp TTT----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC-------------------------
T ss_pred ccc----ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE-------------------------
Confidence 776 556666778889999999999999999999999999997554322111
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEECCC
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQS 233 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~~~d~~~ 233 (685)
...+...+.++++++++ .++++++.|+.|++||+.+
T Consensus 167 ------------------------------------------~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~ 204 (340)
T 4aow_A 167 ------------------------------------------DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204 (340)
T ss_dssp ------------------------------------------SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred ------------------------------------------eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC
Confidence 11567788999998765 5788999999999999999
Q ss_pred CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC
Q 005656 234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD 313 (685)
Q Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 313 (685)
+.....+. +|.+.|++++|+|++++|++|+.||.|++||+.+.+.+..+..+..+.++.|+|++.++ +++.
T Consensus 205 ~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~ 275 (340)
T 4aow_A 205 CKLKTNHI--------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAAT 275 (340)
T ss_dssp TEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEE
T ss_pred CceeeEec--------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccC
Confidence 98877664 89999999999999999999999999999999999999999999999999999987655 5556
Q ss_pred CCeEEEEEcCCCeeEEEEe---------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656 314 DLVIRLFDVVALRMVRKFE---------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~~~---------~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
|+.|++||++++..+..+. +|...|++++|+|||++|++|+.||.|+|||+.+|.
T Consensus 276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 8999999999988776654 688899999999999999999999999999999885
No 36
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=339.58 Aligned_cols=302 Identities=17% Similarity=0.263 Sum_probs=263.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+++|++++|+|+|+ +|++|+.||.|++||+.+++.+..+. +|.+.|.+++|+|++++|++++.||.|++||+..+
T Consensus 31 h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-- 106 (369)
T 3zwl_B 31 HERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-- 106 (369)
T ss_dssp CSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--
T ss_pred eeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--
Confidence 889999999999999 99999999999999999999999998 99999999999999999999999999999999876
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCC-----CceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
+.+..+. |..+|.+++|+|+++++++++.+ |.|++||+........+.... ..++
T Consensus 107 --~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~----------------~~~~- 166 (369)
T 3zwl_B 107 --QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS----------------EEPI- 166 (369)
T ss_dssp --CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC----------------SSCS-
T ss_pred --cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc----------------ccee-
Confidence 5555554 88999999999999999999999 999999998765433221100 0000
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC-C
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS-G 234 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~-~ 234 (685)
... ........+.+++|+|+++++++|+.+|.|++||+.+ +
T Consensus 167 -------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 208 (369)
T 3zwl_B 167 -------------------------------------HKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY 208 (369)
T ss_dssp -------------------------------------EEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT
T ss_pred -------------------------------------eec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 000 0002233899999999999999999999999999998 5
Q ss_pred ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC
Q 005656 235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 314 (685)
Q Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 314 (685)
.....+. .|...|.+++|+|++.+|++++.||.|++||+.+++....+.....+..++|+|++.++++++.+
T Consensus 209 ~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (369)
T 3zwl_B 209 EYVDSID--------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQ 280 (369)
T ss_dssp EEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECC
T ss_pred EeEEEEe--------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecC
Confidence 5555443 79999999999999999999999999999999999999999989999999999999999999998
Q ss_pred C--------------eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeE
Q 005656 315 L--------------VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA 372 (685)
Q Consensus 315 g--------------~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~ 372 (685)
+ .+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|++..+.....
T Consensus 281 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 281 EAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp C-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred CCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence 8 899999999999999999999999999999999999999999999999987655433
No 37
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-40 Score=378.07 Aligned_cols=393 Identities=11% Similarity=0.078 Sum_probs=283.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee-----------EEeecccccCeeEEEEeCC-CcEEEEecCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-----------SVIREAHDNAIISLHFFAN-EPVLMSASADN 68 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~-----------~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~ 68 (685)
|.+.|++++|+|+|+ +|++|+.||.|++||+.++++. ..+. +|.++|++++|+|+ +..|++|+.|+
T Consensus 97 ~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp~~~~~l~~g~~dg 174 (902)
T 2oaj_A 97 VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNPRDIGTVLISYEYV 174 (902)
T ss_dssp CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccc-cCCCCeEEEEEccCCCCEEEEEeCCC
Confidence 567899999999999 9999999999999999998764 1223 79999999999996 47999999999
Q ss_pred cEEEEEecCCCCCCceeEecccC------------------CCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEe
Q 005656 69 SIKMWIFDTTDGDPRLLRFRSGH------------------SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL 130 (685)
Q Consensus 69 ~v~iWd~~~~~~~~~~~~~~~~h------------------~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 130 (685)
+| +||+..+ +.+..+.+| ...|++++|+|+|++|++++.||+|++||+.+++.....
T Consensus 175 ~v-lWd~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r 249 (902)
T 2oaj_A 175 TL-TYSLVEN----EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR 249 (902)
T ss_dssp EE-EEETTTT----EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred cE-EEECCCC----ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence 99 9999876 555544444 678999999999999999999999999999888765431
Q ss_pred ch--hhHHHHHhhccccccc-cccCceeeeecccccccCCcceEEEEcCC-----ceEEEEEcCccc-------------
Q 005656 131 SQ--RHVAKRARKLKMKEEE-LKLKPVIAFDCAEIRERDWCNVVTCHMDT-----AQAYVWRLQNFV------------- 189 (685)
Q Consensus 131 ~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~w~~~~~~------------- 189 (685)
.. ........ ...... ....++..+.......++...+++++..+ ..+.+|++....
T Consensus 250 ~l~~~~~~~~~~--~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 327 (902)
T 2oaj_A 250 TVFETEINVPQP--DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327 (902)
T ss_dssp CSSCSCTTSCCT--TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred eecccccCCCCC--cCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence 10 00000000 000000 01123433333222233333455544322 367788743110
Q ss_pred ----cCceeecCCCCCCCCeEEEEEcc----------CCCEEEEEecCCcEEEEECCCCcccccc-------c-------
Q 005656 190 ----LGEHILRPCPENPTAVKACTISA----------CGNFAVLGTAGGWIERFNLQSGISRGSY-------L------- 241 (685)
Q Consensus 190 ----~~~~~~~~~~~~~~~v~~~~~s~----------~g~~l~~g~~dg~i~~~d~~~~~~~~~~-------~------- 241 (685)
.....+.. .+...+..+++.+ ++..+++++.+|.|++||+.++...... .
T Consensus 328 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 328 YANPKQMKIFPL--PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHSCSEEEEECC--SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hcCccceEEEec--CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence 00111111 2456788888765 3447899999999999999877432210 0
Q ss_pred -------------------cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE----EEe--------
Q 005656 242 -------------------DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK----SRW-------- 290 (685)
Q Consensus 242 -------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~-------- 290 (685)
........+|...+..++|+|+++++++|+.||+|++||+.++... ...
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 0000112355556666777899999999999999999999887532 111
Q ss_pred ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC---------------------------------------------
Q 005656 291 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--------------------------------------------- 325 (685)
Q Consensus 291 ~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--------------------------------------------- 325 (685)
.+...|.+++|+|++++||+|+.||+|++||+.++
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 34478999999999999999999999999999876
Q ss_pred eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeE-----Ee-ec-cceEEEEEc-----CCC---Ce
Q 005656 326 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA-----IH-VD-VSITALSLS-----PNM---DV 390 (685)
Q Consensus 326 ~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~-----~~-~~-~~v~~v~~s-----pdg---~~ 390 (685)
+++..+.+|.+.|++++||||| +||+|+.|++|++||+.++..+.. +. .| ..|++++|+ ||| ++
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~ 644 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL 644 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence 3477888999999999999999 999999999999999988876642 21 23 339999999 886 89
Q ss_pred EEEEEeCCCeEEEEEc
Q 005656 391 LATAHVDQNGVYLWVN 406 (685)
Q Consensus 391 Lat~~~d~~~I~lW~~ 406 (685)
|++++.|+ .|++|+.
T Consensus 645 l~sgs~D~-tv~~wd~ 659 (902)
T 2oaj_A 645 MVCGTDMG-EVITYKI 659 (902)
T ss_dssp EEEEETTS-EEEEEEE
T ss_pred EEEEecCC-cEEEEEE
Confidence 99999997 9999996
No 38
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-39 Score=362.92 Aligned_cols=377 Identities=15% Similarity=0.186 Sum_probs=290.8
Q ss_pred CCCc-EEEEEEcc--CCCCEEEEEeCCCcEEEEeCCCC--------eeeEEeecccccCeeE------------------
Q 005656 1 MRGA-VTALAFSS--DGQPLLASGASSGVISIWNLEKR--------RLQSVIREAHDNAIIS------------------ 51 (685)
Q Consensus 1 h~~~-V~~l~fsp--dg~~~latg~~dg~I~vwd~~~~--------~~~~~~~~~h~~~V~~------------------ 51 (685)
|.+. |++++|+| +|+ +||+|+.||.|++||+.++ +....+. +|..+|.+
T Consensus 62 h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~ 139 (615)
T 1pgu_A 62 HGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGRD 139 (615)
T ss_dssp TTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred CCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccccccccccchhh-cccccEEEEEEeCCCCEEEEeccCCC
Confidence 6788 99999999 999 9999999999999999744 4444444 45545544
Q ss_pred --------------------------EEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCC---CCeEEEEe
Q 005656 52 --------------------------LHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFY 101 (685)
Q Consensus 52 --------------------------l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~---~v~~i~~~ 101 (685)
++|+|+++ .+++++.|+.|++||+... +.+..+.+|.. .|.+++|+
T Consensus 140 ~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 140 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF----KFSASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB----EEEEEECSSSCTTCCEEEEEEC
T ss_pred CccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc----ceeeeecccCCCCceEEEEEEC
Confidence 45555554 6777778899999987765 67778889999 99999999
Q ss_pred cC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceE
Q 005656 102 AN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 180 (685)
Q Consensus 102 ~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (685)
|+ +++|++++.||.|++||+.+++....+.... .....++..+... + ...+.....++.+
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~-----~-~~~l~~~~~d~~i 276 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ-------------EPVQGGIFALSWL-----D-SQKFATVGADATI 276 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCCEEEECCBTT-------------BCCCSCEEEEEES-----S-SSEEEEEETTSEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccc-------------cccCCceEEEEEc-----C-CCEEEEEcCCCcE
Confidence 99 9999999999999999998887766652100 0011223332222 2 2345556667899
Q ss_pred EEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc----------------
Q 005656 181 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS---------------- 244 (685)
Q Consensus 181 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~---------------- 244 (685)
++|++...................+.++.++ +++++++|+.+|.|++||+.++.....+....
T Consensus 277 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~ 355 (615)
T 1pgu_A 277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSY 355 (615)
T ss_dssp EEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEET
T ss_pred EEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECC
Confidence 9999987654443332222334677888886 99999999999999999999876654442100
Q ss_pred ----------ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC--------------------------------
Q 005656 245 ----------ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-------------------------------- 282 (685)
Q Consensus 245 ----------~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-------------------------------- 282 (685)
... ..|...|.+++| +++..+++++.||.|++||+.
T Consensus 356 dg~i~~w~~~~~~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 433 (615)
T 1pgu_A 356 DGRIMEWSSSSMH-QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 433 (615)
T ss_dssp TSCEEETTTTEEE-CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEE
T ss_pred CCeEEEEEchhhc-CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEe
Confidence 000 356667777777 456778888888888888765
Q ss_pred --CCceEEEeecCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCeeE-EEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656 283 --GRDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMV-RKFEGHTDRITDFCFSEDGKWLLSSGMDGS 358 (685)
Q Consensus 283 --~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~-~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~ 358 (685)
+++.+..+.+...+.+++|+ ++++++++. |+.|++||+.+++.. ..+.+|...|++++|+|+|++|++++.||.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 511 (615)
T 1pgu_A 434 SFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK 511 (615)
T ss_dssp TTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe
Confidence 44455556667889999999 889999999 999999999988776 677789999999999999999999999999
Q ss_pred EEEEEcCCCceeeEEe--eccceEEEEEcC----------CCCeEEEEEeCCCeEEEEEcCC
Q 005656 359 LRIWDVILARQIDAIH--VDVSITALSLSP----------NMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 359 I~iwd~~~~~~i~~~~--~~~~v~~v~~sp----------dg~~Lat~~~d~~~I~lW~~~~ 408 (685)
|++||+.+++.+..+. +...|++++|+| ++++|++++.|+ .|++|+...
T Consensus 512 i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~ 572 (615)
T 1pgu_A 512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-NIFIYSVKR 572 (615)
T ss_dssp EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-CEEEEESSC
T ss_pred EEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC-cEEEEECCC
Confidence 9999999999998877 445599999999 999999999997 999999754
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-39 Score=333.72 Aligned_cols=293 Identities=16% Similarity=0.245 Sum_probs=241.0
Q ss_pred eeeEEeecccccCeeEEEE-----eC-CCcEEEEecCCCcEEEEEecCCCCC---CceeEecccCCCCCeEEEEecCCCE
Q 005656 36 RLQSVIREAHDNAIISLHF-----FA-NEPVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGRH 106 (685)
Q Consensus 36 ~~~~~~~~~h~~~V~~l~~-----sp-~~~~l~s~s~D~~v~iWd~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~~ 106 (685)
++...+. +|.+.|++++| ++ ++++|+||+.|++|++|++...... ......+.+|...|.+++|+|++.+
T Consensus 12 ~~~~~l~-gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 12 VKRGILE-GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEE-CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeec-cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 3456676 99999999999 76 8999999999999999999764321 2455677899999999999999999
Q ss_pred EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcC
Q 005656 107 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 186 (685)
Q Consensus 107 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 186 (685)
+++++.|++|++||+.+++....+.
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~------------------------------------------------------- 115 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFV------------------------------------------------------- 115 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEE-------------------------------------------------------
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEc-------------------------------------------------------
Confidence 9999999999999998876655443
Q ss_pred ccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC--
Q 005656 187 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-- 264 (685)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 264 (685)
.|...|.+++|+|+++++++|+.||.|++||+......... ....|...|.+++|+|++
T Consensus 116 -------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~ 176 (343)
T 2xzm_R 116 -------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA------EKENHSDWVSCVRYSPIMKS 176 (343)
T ss_dssp -------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECC------TTTSCSSCEEEEEECCCCCS
T ss_pred -------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeee------cccCCCceeeeeeecccccc
Confidence 67889999999999999999999999999999743322111 123788999999999987
Q ss_pred --------CEEEEEECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CeeEEEEecC
Q 005656 265 --------TLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFEGH 334 (685)
Q Consensus 265 --------~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h 334 (685)
.++++++.||.|++||.. ......+. +...|.+++|+|++++|++|+.|+.|++||+.+ ......+. +
T Consensus 177 ~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~ 254 (343)
T 2xzm_R 177 ANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-A 254 (343)
T ss_dssp CSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-C
T ss_pred ccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-C
Confidence 789999999999999954 44444444 458899999999999999999999999999954 44444443 5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee--EEe-----------ec-cceEEEEEcCCCCeEEEEEeCCCe
Q 005656 335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID--AIH-----------VD-VSITALSLSPNMDVLATAHVDQNG 400 (685)
Q Consensus 335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~--~~~-----------~~-~~v~~v~~spdg~~Lat~~~d~~~ 400 (685)
...|++++|+|++++++++ .|+.|++|++.+++... .+. .+ ..|++++|+|+|++|++|+.|+ .
T Consensus 255 ~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg-~ 332 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG-V 332 (343)
T ss_dssp SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS-E
T ss_pred CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc-e
Confidence 5679999999999987755 57889999998877654 332 22 3499999999999999999997 9
Q ss_pred EEEEEcC
Q 005656 401 VYLWVNR 407 (685)
Q Consensus 401 I~lW~~~ 407 (685)
|++|+..
T Consensus 333 v~~w~~~ 339 (343)
T 2xzm_R 333 IRTFSFE 339 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999853
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-39 Score=338.69 Aligned_cols=299 Identities=15% Similarity=0.254 Sum_probs=251.4
Q ss_pred CcEEEEeCCCCeee----EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCC--------
Q 005656 25 GVISIWNLEKRRLQ----SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-------- 92 (685)
Q Consensus 25 g~I~vwd~~~~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~-------- 92 (685)
....+|+....+.. .... +|.+.|.+++|+|+|++|++++ ++++++|++..+ ..+..+.+|.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g----~~~~~l~~~~~~~~~~~~ 113 (393)
T 1erj_A 40 DYYILYNPALPREIDVELHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG----SLVARLSDDSAANKDPEN 113 (393)
T ss_dssp SCEEEECTTSCCCEEEEEEEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC----CEEEEECC----------
T ss_pred ceEEEECCCCCcccCceeEEec-CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC----CEEEEecCcccccccccc
Confidence 33557765543321 1222 6999999999999999999986 789999998776 4444444432
Q ss_pred ----------CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 93 ----------APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 93 ----------~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
..|.+++|+|+|++|++|+.||.|++||+.+++....+.
T Consensus 114 ~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------- 162 (393)
T 1erj_A 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ------------------------------- 162 (393)
T ss_dssp -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------------------------------
T ss_pred ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-------------------------------
Confidence 248999999999999999999999999998776544442
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
.|...|.+++|+|+++++++|+.||.|++||+.++.....+
T Consensus 163 -------------------------------------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-- 203 (393)
T 1erj_A 163 -------------------------------------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-- 203 (393)
T ss_dssp -------------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--
T ss_pred -------------------------------------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE--
Confidence 67888999999999999999999999999999998876655
Q ss_pred ccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEe--------ecCCceeEEEEeecCCEEEEEeC
Q 005656 243 MSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRW--------EVGCSLVKIVYHRVNGLLATVAD 313 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~ 313 (685)
.+...+.+++|+| +++++++++.||.|++||+.++..+..+ .+...|.+++|+|++++|++|+.
T Consensus 204 -------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 204 -------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp -------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred -------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 5667899999999 8899999999999999999998877665 24478999999999999999999
Q ss_pred CCeEEEEEcCCC------------eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eE
Q 005656 314 DLVIRLFDVVAL------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-IT 380 (685)
Q Consensus 314 dg~I~i~d~~~~------------~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~ 380 (685)
|+.|++||+.+. .+...+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|.. |.
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~ 356 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE
Confidence 999999999753 45667889999999999999999999999999999999999999998886655 99
Q ss_pred EEEEcC------CCCeEEEEEeCCCeEEEEEcC
Q 005656 381 ALSLSP------NMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 381 ~v~~sp------dg~~Lat~~~d~~~I~lW~~~ 407 (685)
+++|++ ++.+|++++.|+ .|++|+.+
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~Dg-~i~iW~~~ 388 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSGDC-KARIWKYK 388 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTS-EEEEEEEE
T ss_pred EEEecCCcCcCCCCCEEEEECCCC-cEEECccc
Confidence 999886 688999999997 99999854
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.1e-40 Score=350.70 Aligned_cols=326 Identities=13% Similarity=0.156 Sum_probs=268.2
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
+++++|+|+|+ +|++|+.||.|++||+.+++....+. .| ..+....|+|++++|++++.|+.|++||+..+ ..
T Consensus 59 ~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~ 131 (420)
T 3vl1_A 59 GKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKMLK-RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----LQ 131 (420)
T ss_dssp CTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTTSC-SC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC----EE
T ss_pred ccceeeeecCC-eEEEEEcCCcEEEEEecccceeeEEe-cC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc----ce
Confidence 45789999999 89999999999999999988777665 55 45556678999999999999999999998765 67
Q ss_pred eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 164 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (685)
...+.+|...|++++|+|++++|++++.||.|++||+.+++....+.
T Consensus 132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--------------------------------- 178 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI--------------------------------- 178 (420)
T ss_dssp EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE---------------------------------
T ss_pred eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc---------------------------------
Confidence 77778999999999999999999999999999999998776554442
Q ss_pred cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc
Q 005656 165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 244 (685)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~ 244 (685)
.|...|.+++|+|+++++++|+.||.|++||+.++.....+....
T Consensus 179 -----------------------------------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 223 (420)
T 3vl1_A 179 -----------------------------------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 223 (420)
T ss_dssp -----------------------------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT
T ss_pred -----------------------------------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC
Confidence 678899999999999999999999999999999998776664210
Q ss_pred cc----------------ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec--CCceeEEEEeecCC
Q 005656 245 ER----------------SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNG 306 (685)
Q Consensus 245 ~~----------------~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~ 306 (685)
.. ....|...+.+++|+|+++++++++.||.|++||+++++....+.. ...+.+++|+|++.
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 303 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNA 303 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCC
Confidence 00 0001234455555678999999999999999999999887776653 47899999999999
Q ss_pred -EEEEEeCCCeEEEEEcCCCe-eEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc----------eeeEE
Q 005656 307 -LLATVADDLVIRLFDVVALR-MVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR----------QIDAI 373 (685)
Q Consensus 307 -~l~~~~~dg~I~i~d~~~~~-~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~----------~i~~~ 373 (685)
+|++|+.||.|++||+.+++ ++..+.+ |...|+++.| +++++|++++.||.|++|++.... .....
T Consensus 304 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 382 (420)
T 3vl1_A 304 NYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLV 382 (420)
T ss_dssp TEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEEC
T ss_pred CEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEc
Confidence 99999999999999999874 4777776 6677888755 578899999999999999988732 12222
Q ss_pred eeccceEEEEEcCCCC---eEEEEEeCCCeEEEEEcC
Q 005656 374 HVDVSITALSLSPNMD---VLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 374 ~~~~~v~~v~~spdg~---~Lat~~~d~~~I~lW~~~ 407 (685)
.+...|.+++|+|++. .|++++.+| .+.+|+..
T Consensus 383 ~~~~~v~~~~~s~~~~~~g~l~a~g~~g-~~~~~~~~ 418 (420)
T 3vl1_A 383 SNDDAVSQFCYVSDDESNGEVLEVGKNN-FCALYNLS 418 (420)
T ss_dssp CSSCCCCEEEEECCSSSSCEEEEEETTT-EEEEEESC
T ss_pred cCCcceEEEEEccCCCCcceEEEEcCCc-eEEEEecc
Confidence 3445599999999999 677777676 99999853
No 42
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-39 Score=331.41 Aligned_cols=298 Identities=14% Similarity=0.196 Sum_probs=231.9
Q ss_pred CCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec-cc-CCCCCeEEEEecCCCEEEEEe
Q 005656 34 KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-SG-HSAPPLCIRFYANGRHILSAG 111 (685)
Q Consensus 34 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-~~-h~~~v~~i~~~~~~~~l~s~s 111 (685)
+.+++..+. +|.++|.+++|+|+ +|++|+.|++|++|++..+.. .....+ .+ |..+|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~-~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLK-LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEE-CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--EEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeec-cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--EEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 456677887 99999999999987 999999999999999876421 334443 34 999999999999999999999
Q ss_pred CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccC
Q 005656 112 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 191 (685)
Q Consensus 112 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 191 (685)
.|++|++|++....... . .
T Consensus 78 ~D~~v~iw~~~~~~~~~-~------------------------------------------------------------~ 96 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT-F------------------------------------------------------------E 96 (330)
T ss_dssp TTSCEEEEEC--------C------------------------------------------------------------C
T ss_pred CCCcEEEEEcccCcCcc-c------------------------------------------------------------c
Confidence 99999999985321000 0 0
Q ss_pred ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC-c---cccccccccccccCCCCcCEEEEEEcCCCCEE
Q 005656 192 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-I---SRGSYLDMSERSNYAHNGEVVGVACDSTNTLM 267 (685)
Q Consensus 192 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~-~---~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 267 (685)
........+|...|.+++|+|+|+++++|+.||.|++||+... . ....+ .+|...|.+++|+|++.+|
T Consensus 97 ~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~--------~~h~~~v~~v~~~p~~~~l 168 (330)
T 2hes_X 97 MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL--------QEHSQDVKHVIWHPSEALL 168 (330)
T ss_dssp CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE--------CCCSSCEEEEEECSSSSEE
T ss_pred ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe--------ccCCCceEEEEECCCCCEE
Confidence 0000111267889999999999999999999999999999543 2 22222 3899999999999999999
Q ss_pred EEEECCCeEEEEECCCC--ceEEEeec-CCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCC--------eeEEEEec-
Q 005656 268 ISAGYHGDIKVWDFKGR--DLKSRWEV-GCSLVKIVYHRV--NGLLATVADDLVIRLFDVVAL--------RMVRKFEG- 333 (685)
Q Consensus 268 ~s~s~dg~i~iwd~~~~--~~~~~~~~-~~~i~~~~~~~~--~~~l~~~~~dg~I~i~d~~~~--------~~~~~~~~- 333 (685)
++++.|++|++||..++ +++..+.. ...|.+++|+|+ +.+|++|+.|++|++||+.++ .....+.+
T Consensus 169 ~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
T 2hes_X 169 ASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV 248 (330)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSC
T ss_pred EEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccc
Confidence 99999999999998766 45556654 488999999998 669999999999999999765 44555655
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--eeeEE-eecc--ceEEEEEcC--CCCeEEEEEeCCCeEEEEEc
Q 005656 334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR--QIDAI-HVDV--SITALSLSP--NMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 334 h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~--~i~~~-~~~~--~v~~v~~sp--dg~~Lat~~~d~~~I~lW~~ 406 (685)
|...|++++|++++ +|++++.||.|++|+..++. .+... ..|. .|.+++|+| ++++||+++.|+ .|++|+.
T Consensus 249 h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg-~v~~W~~ 326 (330)
T 2hes_X 249 HKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG-IVNFWSL 326 (330)
T ss_dssp CSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS-EEEEEEC
T ss_pred cccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC-cEEEEEe
Confidence 99999999999765 89999999999999998774 23222 3333 699999999 789999999997 9999986
Q ss_pred C
Q 005656 407 R 407 (685)
Q Consensus 407 ~ 407 (685)
.
T Consensus 327 ~ 327 (330)
T 2hes_X 327 E 327 (330)
T ss_dssp -
T ss_pred c
Confidence 4
No 43
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.7e-39 Score=343.16 Aligned_cols=312 Identities=16% Similarity=0.310 Sum_probs=272.8
Q ss_pred CCCc-EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656 1 MRGA-VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 79 (685)
Q Consensus 1 h~~~-V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~ 79 (685)
|.+. ++|+++ +|+ +|++|+.||.|++||+.+++.+..+. +|.+.|.+++|+ ++++++++.||+|++||+.++
T Consensus 117 h~~~v~~~~~~--~g~-~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~- 189 (445)
T 2ovr_B 117 HDDHVITCLQF--CGN-RIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG- 189 (445)
T ss_dssp STTSCEEEEEE--ETT-EEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-
T ss_pred cCCCcEEEEEE--cCC-EEEEEECCCcEEEEECCCCcEEEEEc-CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC-
Confidence 5665 465554 577 99999999999999999999999998 999999999998 569999999999999999877
Q ss_pred CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656 80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 159 (685)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (685)
+.+..+.+|...|.++.|+ ++.+++++.||+|++||+.+++....+.
T Consensus 190 ---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~---------------------------- 236 (445)
T 2ovr_B 190 ---ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM---------------------------- 236 (445)
T ss_dssp ---EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE----------------------------
T ss_pred ---cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc----------------------------
Confidence 7778888999999999996 5689999999999999998776554442
Q ss_pred ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656 160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 239 (685)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~ 239 (685)
.+...+.++++ +++++++|+.||.|++||+.++.....
T Consensus 237 ----------------------------------------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~ 274 (445)
T 2ovr_B 237 ----------------------------------------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 274 (445)
T ss_dssp ----------------------------------------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE
T ss_pred ----------------------------------------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE
Confidence 56778899988 789999999999999999999887776
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEE
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIR 318 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~ 318 (685)
+. +|...|.++.| ++.++++++.||.|++||+.+++.+..+..+ ..+.++.+ +++++++|+.||.|+
T Consensus 275 ~~--------~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 342 (445)
T 2ovr_B 275 LQ--------GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVK 342 (445)
T ss_dssp EC--------CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEE
T ss_pred ec--------CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEE
Confidence 64 89999999999 7889999999999999999999988887655 55666655 578999999999999
Q ss_pred EEEcCCCeeEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe------eccceEEEEEcCCCC
Q 005656 319 LFDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH------VDVSITALSLSPNMD 389 (685)
Q Consensus 319 i~d~~~~~~~~~~~~---h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~------~~~~v~~v~~spdg~ 389 (685)
+||+.+++.+..+.+ |...|++++|+ +++|++|+.||.|++||+.+++.+..+. +...|++++|+|++.
T Consensus 343 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 343 IWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 420 (445)
T ss_dssp EEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred EEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE
Confidence 999999999999987 88899999995 6899999999999999999999998883 334599999999999
Q ss_pred eEEEEEeCCC---eEEEEEcCC
Q 005656 390 VLATAHVDQN---GVYLWVNRC 408 (685)
Q Consensus 390 ~Lat~~~d~~---~I~lW~~~~ 408 (685)
+|++++.||. .|++|+...
T Consensus 421 ~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 421 VCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEcccCCCCccEEEEEECCC
Confidence 9999999972 399998654
No 44
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-39 Score=368.40 Aligned_cols=286 Identities=21% Similarity=0.310 Sum_probs=249.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-----eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 75 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~-----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~ 75 (685)
|++.|++++|+|++..+|+||+.||+|++||+.+. .....+. +|...|.+++|+|++++|+||+.|++|++||+
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 89999999999987559999999999999999763 4456666 99999999999999999999999999999999
Q ss_pred cCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 76 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
.++ .....+.+|...|.+++|+|++++|++++.|++|++||+.........
T Consensus 460 ~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~------------------------- 510 (694)
T 3dm0_A 460 AAG----VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS------------------------- 510 (694)
T ss_dssp TTT----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC-------------------------
T ss_pred CCC----cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec-------------------------
Confidence 876 677788899999999999999999999999999999997433211110
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEECCC
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQS 233 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~~~d~~~ 233 (685)
.....|...|.+++|+|++ ..+++|+.||.|++||+.+
T Consensus 511 ----------------------------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~ 550 (694)
T 3dm0_A 511 ----------------------------------------EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550 (694)
T ss_dssp ----------------------------------------SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred ----------------------------------------cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC
Confidence 0112577889999999987 6899999999999999999
Q ss_pred CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC
Q 005656 234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD 313 (685)
Q Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 313 (685)
+.....+. +|.+.|++++|+|++++|++++.||+|++||+.+++.+..+..+..+.+++|+|++.++++++
T Consensus 551 ~~~~~~~~--------~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~- 621 (694)
T 3dm0_A 551 CKLRSTLA--------GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT- 621 (694)
T ss_dssp CCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-
T ss_pred CcEEEEEc--------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-
Confidence 88776654 899999999999999999999999999999999999998888889999999999998888776
Q ss_pred CCeEEEEEcCCCeeEEEEecCC-------------------CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 314 DLVIRLFDVVALRMVRKFEGHT-------------------DRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~~~~h~-------------------~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
++.|++||+.+++.+..+..+. ..+++++|||||++|++|+.||+|++|++.
T Consensus 622 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 622 EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 5569999999999888775432 137899999999999999999999999985
No 45
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.6e-39 Score=371.67 Aligned_cols=324 Identities=15% Similarity=0.200 Sum_probs=281.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+++|++++|+|+|+ +||+|+.||.|+|||+.+++.+..+. +|.++|++++|+|++++|++++.||.|++|++.++
T Consensus 12 h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-- 87 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-- 87 (814)
T ss_dssp ECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--
T ss_pred CCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--
Confidence 788999999999999 99999999999999999999999998 99999999999999999999999999999999877
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc-eeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 159 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (685)
+.+..+.+|...|++++|+|++++|++++.||.|++||+.++. ....+.
T Consensus 88 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---------------------------- 137 (814)
T 3mkq_A 88 --EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---------------------------- 137 (814)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE----------------------------
T ss_pred --cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc----------------------------
Confidence 6777788999999999999999999999999999999997662 222221
Q ss_pred ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCcccc
Q 005656 160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
.+...+.+++|+| +++.+++|+.+|.|++||+.++....
T Consensus 138 ----------------------------------------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 177 (814)
T 3mkq_A 138 ----------------------------------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (814)
T ss_dssp ----------------------------------------CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred ----------------------------------------CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 5678899999999 89999999999999999998877666
Q ss_pred ccccccccccCCCCcCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCC
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDL 315 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg 315 (685)
.+.. .|...+.+++|+| ++.++++++.||.|++||+.+++....+.. ...+.+++|+|++.++++++.||
T Consensus 178 ~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 178 TLTT-------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250 (814)
T ss_dssp EEEC-------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred EEec-------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 5531 4558899999999 899999999999999999999998888874 48899999999999999999999
Q ss_pred eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCceeeEEe-------------------
Q 005656 316 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK--WLLSSGMDGSLRIWDVILARQIDAIH------------------- 374 (685)
Q Consensus 316 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~--~l~s~s~Dg~I~iwd~~~~~~i~~~~------------------- 374 (685)
.|++||+.+++.+..+..|...|.+++|+|+|+ ++++++ |+.+.+|++..+.....+.
T Consensus 251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 329 (814)
T 3mkq_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIF 329 (814)
T ss_dssp CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEE
T ss_pred eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeee
Confidence 999999999999999999999999999999987 455554 6678899876543221111
Q ss_pred -------------------------eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 375 -------------------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 375 -------------------------~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
....+++++|+|+|++|++++ ++ .+.+|+...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~-~~~i~~~~~ 386 (814)
T 3mkq_A 330 TAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DG-EYVIYTALA 386 (814)
T ss_dssp EEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TT-EEEEEETTT
T ss_pred eeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CC-EEEEEECcc
Confidence 112378999999999999998 65 899998543
No 46
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-38 Score=325.95 Aligned_cols=309 Identities=21% Similarity=0.313 Sum_probs=251.6
Q ss_pred EEeCCCc--EEEEeC--CCCeeeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEEEEEecCCCCC-CceeEecccCCC
Q 005656 20 SGASSGV--ISIWNL--EKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSA 93 (685)
Q Consensus 20 tg~~dg~--I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~~~h~~ 93 (685)
+|...|+ +.++.. ++.++..+++ ||.+.|++|+|+|+ +++|+|||.|++|++||+...... ..+...+.+|..
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~-GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~ 87 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87 (340)
T ss_dssp -----------------CEEEEEEEEC-CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred cccCCCCccEEEEEccCCceEEEEEEC-CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence 4444444 333333 3345667787 99999999999997 579999999999999999875432 245667889999
Q ss_pred CCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE
Q 005656 94 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 173 (685)
Q Consensus 94 ~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (685)
.|.+++|+|++++|++++.|+.|++|+...........
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~------------------------------------------ 125 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV------------------------------------------ 125 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------------------------------------------
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccceeeeec------------------------------------------
Confidence 99999999999999999999999999987665443332
Q ss_pred EcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc
Q 005656 174 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 253 (685)
Q Consensus 174 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~ 253 (685)
.+...+..+.++++++++++|+.||.+++||+......... ..+|..
T Consensus 126 --------------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~-------~~~~~~ 172 (340)
T 4aow_A 126 --------------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ-------DESHSE 172 (340)
T ss_dssp --------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC-------SSSCSS
T ss_pred --------------------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE-------eccccC
Confidence 44567888899999999999999999999998876554332 238999
Q ss_pred CEEEEEEcCCC--CEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE
Q 005656 254 EVVGVACDSTN--TLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK 330 (685)
Q Consensus 254 ~v~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~ 330 (685)
.+..++|++++ .++++++.|+.|++||+.+++....+.. ..+|.+++|+|++++|++|+.|+.|++||+.+.+.+..
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence 99999998765 5788999999999999999998887765 48899999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe----------eccceEEEEEcCCCCeEEEEEeCCCe
Q 005656 331 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH----------VDVSITALSLSPNMDVLATAHVDQNG 400 (685)
Q Consensus 331 ~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~----------~~~~v~~v~~spdg~~Lat~~~d~~~ 400 (685)
+.++ ..|++++|+|++.++ +++.|+.|++||+.++..+..+. +...|++++|+|+|++|++++.|+ .
T Consensus 253 ~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg-~ 329 (340)
T 4aow_A 253 LDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN-L 329 (340)
T ss_dssp EECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS-C
T ss_pred ecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC-E
Confidence 8855 679999999988655 55679999999999988776654 234499999999999999999997 9
Q ss_pred EEEEEcC
Q 005656 401 VYLWVNR 407 (685)
Q Consensus 401 I~lW~~~ 407 (685)
|+||+.+
T Consensus 330 v~iW~~~ 336 (340)
T 4aow_A 330 VRVWQVT 336 (340)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9999864
No 47
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.1e-39 Score=338.49 Aligned_cols=302 Identities=10% Similarity=0.137 Sum_probs=252.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe------eeEEeecccccCeeEEEEeCC----C---cEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR------LQSVIREAHDNAIISLHFFAN----E---PVLMSASAD 67 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~sp~----~---~~l~s~s~D 67 (685)
|+++|++++|+| + +|++|+.||.|++||+.+++ ....+. +|...|++++|+|+ + ++|++++.|
T Consensus 15 h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 15 HDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred hhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 889999999999 4 89999999999999999987 677777 89999999999999 9 999999999
Q ss_pred CcEEEEEecCCCCCCc-eeEecccC-----CCCCeEEEEe----cCCCE-EEEEeCCCceEEEEeec------CceeeEe
Q 005656 68 NSIKMWIFDTTDGDPR-LLRFRSGH-----SAPPLCIRFY----ANGRH-ILSAGQDRAFRLFSVIQ------DQQSREL 130 (685)
Q Consensus 68 ~~v~iWd~~~~~~~~~-~~~~~~~h-----~~~v~~i~~~----~~~~~-l~s~s~dg~i~vwd~~~------~~~~~~~ 130 (685)
+.|++|++..+....+ .+..+.+| ...|.+++|+ |++++ |++++.||.|++||+.+ +....
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 168 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN-- 168 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC--
T ss_pred CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee--
Confidence 9999999988732111 16667788 5999999999 99999 99999999999999987 32221
Q ss_pred chhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE
Q 005656 131 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI 210 (685)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (685)
..+...+ .. .......+...+.+++|
T Consensus 169 --------------------~~~~~~~--------------~~--------------------~~~~~~~~~~~i~~~~~ 194 (397)
T 1sq9_A 169 --------------------WSPTLEL--------------QG--------------------TVESPMTPSQFATSVDI 194 (397)
T ss_dssp --------------------CCCEEEE--------------EE--------------------EECCSSSSCCCCCEEEE
T ss_pred --------------------ccCccee--------------ee--------------------eeccccCCCCCceEEEE
Confidence 0000000 00 00011256788999999
Q ss_pred ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCC---CcCEEEEEEcCCCCEEEEEECC---CeEEEEECCCC
Q 005656 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYH---GDIKVWDFKGR 284 (685)
Q Consensus 211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~ 284 (685)
+|++ ++++|+.+|.|++||+.++.....+.. ..+| ...|.+++|+|++++|++++.| |.|++||+.++
T Consensus 195 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 195 SERG-LIATGFNNGTVQISELSTLRPLYNFES-----QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp CTTS-EEEEECTTSEEEEEETTTTEEEEEEEC-----CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred CCCc-eEEEEeCCCcEEEEECCCCceeEEEec-----cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 9999 999999999999999999887766641 0128 8999999999999999999999 99999999999
Q ss_pred ceEEEee--------------cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe------cC----------
Q 005656 285 DLKSRWE--------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE------GH---------- 334 (685)
Q Consensus 285 ~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~------~h---------- 334 (685)
+.+..+. +...+.+++|+|++++|++++.||.|++||+.+++.+..+. +|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 348 (397)
T 1sq9_A 269 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 348 (397)
T ss_dssp CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccc
Confidence 9888877 45889999999999999999999999999999999999999 88
Q ss_pred -----CCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEcCCCc
Q 005656 335 -----TDRITDFCFSEDG----------KWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 335 -----~~~I~~l~~spdg----------~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
...|++++|+|+| ++|++++.||.|++|++.+|+
T Consensus 349 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 349 GDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp SCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9999999999998 799999999999999998764
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-38 Score=326.84 Aligned_cols=282 Identities=12% Similarity=0.208 Sum_probs=250.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee----cccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~ 76 (685)
|.++|++++|+|+|+ +|++++ ||.|++||+.++.....+. .+|...|.+++|+|++++|++++.|+.|++|++.
T Consensus 50 h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 50 HGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 788999999999999 899988 9999999998765332222 1689999999999999999999999999999987
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 156 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
.+. ......+.+|...|.+++|+|+++++++++.||.|++||+.+++....+.
T Consensus 128 ~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------------------------- 180 (337)
T 1gxr_A 128 APT--PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ------------------------- 180 (337)
T ss_dssp CC----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------------------------
T ss_pred CCC--cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-------------------------
Confidence 653 23566677899999999999999999999999999999998776544442
Q ss_pred eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656 157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 236 (685)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~ 236 (685)
.+...+.+++|+|+++++++++.+|.|++||+.++..
T Consensus 181 -------------------------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 217 (337)
T 1gxr_A 181 -------------------------------------------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217 (337)
T ss_dssp -------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred -------------------------------------------cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce
Confidence 5677899999999999999999999999999999887
Q ss_pred ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCe
Q 005656 237 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV 316 (685)
Q Consensus 237 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 316 (685)
...+ .|...+.+++|+|+++++++++.||.|++||+.+++......+...+.+++|+|++++|++++.||.
T Consensus 218 ~~~~---------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 218 LQQH---------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp EEEE---------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred Eeee---------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence 6655 5778899999999999999999999999999999888776667799999999999999999999999
Q ss_pred EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
|++||+.+++.+... .|...|++++|+|++++|++++.||.|++|++
T Consensus 289 i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 289 LNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999888554 48899999999999999999999999999996
No 49
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.8e-38 Score=337.84 Aligned_cols=335 Identities=16% Similarity=0.264 Sum_probs=268.6
Q ss_pred CCCc-EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656 1 MRGA-VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 79 (685)
Q Consensus 1 h~~~-V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~ 79 (685)
|.+. |+|++|+ +. +|++|+.||.|++||+.+++.+..+. +|.+.|.+++|+|++ +|++|+.||+|++||+.++
T Consensus 120 h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~- 193 (464)
T 3v7d_B 120 HMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG- 193 (464)
T ss_dssp CSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT-
T ss_pred CCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-
Confidence 5566 5777774 55 99999999999999999999999998 999999999999988 9999999999999999876
Q ss_pred CCCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 80 GDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
+.+..+.+|..+|.+++|++ +++++++++.||+|++||+.+........... ..+....
T Consensus 194 ---~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~----------------~~~~~~~ 254 (464)
T 3v7d_B 194 ---CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH----------------DYPLVFH 254 (464)
T ss_dssp ---EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C----------------CSSEEES
T ss_pred ---cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC----------------CcceEee
Confidence 67888889999999999994 77899999999999999998765433221100 0000000
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
.+. ...........+...+.++ +++++++++|+.||.|++||+.++...
T Consensus 255 ~~~-----------------------------~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~ 303 (464)
T 3v7d_B 255 TPE-----------------------------ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCL 303 (464)
T ss_dssp CGG-----------------------------GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEE
T ss_pred ccC-----------------------------CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 000 0000111112556666665 688999999999999999999998887
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCe
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLV 316 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~ 316 (685)
..+. +|...|.+++|+|+++++++++.||.|++||+.+++.+..+..+ ..+.++.++ ++++++++.||.
T Consensus 304 ~~~~--------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~ 373 (464)
T 3v7d_B 304 YILS--------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS 373 (464)
T ss_dssp EEEC--------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred EEec--------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence 7664 89999999999999999999999999999999999998888654 788899887 689999999999
Q ss_pred EEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE--eeccceEEEEEcCCCCeEEEE
Q 005656 317 IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVLATA 394 (685)
Q Consensus 317 I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~--~~~~~v~~v~~spdg~~Lat~ 394 (685)
|++||+.++....... |...+..++|+|++++|++++ ||.|++||+.+++++..+ .+...|++++|+ ++.++++
T Consensus 374 v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~ 449 (464)
T 3v7d_B 374 IRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAA 449 (464)
T ss_dssp EEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEE
T ss_pred EEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEE
Confidence 9999999988766664 777888999999999999998 899999999999998763 334459999997 5555555
Q ss_pred EeCCCeEEEEE
Q 005656 395 HVDQNGVYLWV 405 (685)
Q Consensus 395 ~~d~~~I~lW~ 405 (685)
+.+++.+++|.
T Consensus 450 ~~~~g~~~i~~ 460 (464)
T 3v7d_B 450 VEKDGQSFLEI 460 (464)
T ss_dssp EEETTEEEEEE
T ss_pred EEeCCeEEEEE
Confidence 55554666664
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=336.07 Aligned_cols=293 Identities=15% Similarity=0.191 Sum_probs=245.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeC---CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC---CcEEEEecCCCcEEEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN---EPVLMSASADNSIKMWI 74 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~---dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~l~s~s~D~~v~iWd 74 (685)
|.++|++++|+|+|..++++|+. ||.|++||+.+++.......+|...|.+++|+|+ +.+|++++.||.|++|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 78899999999999757778876 9999999999988776655589999999999998 69999999999999999
Q ss_pred ecCCCCCCceeEecccCCCCCeEEEE------ecCCCEEEEEeCCCceEEEEeecCc-eeeEechhhHHHHHhhcccccc
Q 005656 75 FDTTDGDPRLLRFRSGHSAPPLCIRF------YANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEE 147 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~v~~i~~------~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 147 (685)
+..+. ..+..+.+|...|.++.| +|++++|++++.||.|++||+.++. ....+...
T Consensus 97 ~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-------------- 159 (357)
T 3i2n_A 97 LEAPE---MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV-------------- 159 (357)
T ss_dssp TTSCS---SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC--------------
T ss_pred CCCCC---ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc--------------
Confidence 88763 256677899999999965 6789999999999999999998765 23322100
Q ss_pred ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEE----EccCCCEEEEEecC
Q 005656 148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT----ISACGNFAVLGTAG 223 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~g~~l~~g~~d 223 (685)
.......+.+++ |+|+++++++|+.+
T Consensus 160 --------------------------------------------------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 189 (357)
T 3i2n_A 160 --------------------------------------------------QGENKRDCWTVAFGNAYNQEERVVCAGYDN 189 (357)
T ss_dssp --------------------------------------------------TTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred --------------------------------------------------CCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence 002244678887 78999999999999
Q ss_pred CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC---CCCEEEEEECCCeEEEEECCCCceEEEe------ecCC
Q 005656 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRDLKSRW------EVGC 294 (685)
Q Consensus 224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~ 294 (685)
|.|++||++++...... .|...|.+++|+| ++.++++++.||.|++||+++++....+ .+..
T Consensus 190 ~~i~i~d~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 190 GDIKLFDLRNMALRWET---------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS 260 (357)
T ss_dssp SEEEEEETTTTEEEEEE---------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS
T ss_pred CeEEEEECccCceeeec---------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC
Confidence 99999999998765433 7889999999999 8999999999999999999877654443 3558
Q ss_pred ceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC-------------------eeEEEEecCCCCeEEEEEcCCCCEEE-EE
Q 005656 295 SLVKIVYHRVNG-LLATVADDLVIRLFDVVAL-------------------RMVRKFEGHTDRITDFCFSEDGKWLL-SS 353 (685)
Q Consensus 295 ~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~-------------------~~~~~~~~h~~~I~~l~~spdg~~l~-s~ 353 (685)
.+.+++|+|++. ++++++.||.|++||+.++ +.+..+.+|...|++++|+|++++|+ ++
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~ 340 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCS 340 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEE
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEe
Confidence 999999999998 8999999999999999854 56788899999999999999999998 89
Q ss_pred eCCCcEEEEEcCCCce
Q 005656 354 GMDGSLRIWDVILARQ 369 (685)
Q Consensus 354 s~Dg~I~iwd~~~~~~ 369 (685)
+.||.|++||+.+.+.
T Consensus 341 ~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 341 SFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ETTSEEEEEEECC---
T ss_pred cCCCcEEEEECCCccc
Confidence 9999999999987654
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2e-38 Score=330.60 Aligned_cols=291 Identities=12% Similarity=0.160 Sum_probs=247.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|+++|++++|+|+|+ +||+|+.||.|++||+.+++ .+..+. +|...|.+++|+|++++|++++.|+.|++|++..+
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 789999999999999 99999999999999999987 788887 89999999999999999999999999999999765
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
. ........+|...|.+++|+|++++|++++.||.|++||+..........
T Consensus 85 ~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--------------------------- 135 (372)
T 1k8k_C 85 T--WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK--------------------------- 135 (372)
T ss_dssp E--EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE---------------------------
T ss_pred e--eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee---------------------------
Confidence 2 12233446799999999999999999999999999999998765321110
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC------
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ------ 232 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~------ 232 (685)
.....+...+.+++|+|+++++++|+.+|.|++||+.
T Consensus 136 -------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 178 (372)
T 1k8k_C 136 -------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 178 (372)
T ss_dssp -------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred -------------------------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccc
Confidence 0001567889999999999999999999999999965
Q ss_pred ------------CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEE
Q 005656 233 ------------SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKI 299 (685)
Q Consensus 233 ------------~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~ 299 (685)
.+.....+ ..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+ .++.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 250 (372)
T 1k8k_C 179 RPAPTPWGSKMPFGELMFES--------SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 250 (372)
T ss_dssp CCCCBTTBSCCCTTCEEEEC--------CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE
T ss_pred cccccccccccchhhheEec--------CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE
Confidence 33333333 278999999999999999999999999999999999988888765 689999
Q ss_pred EEeecCCEEEEEeCCCeEEEEEcCC--Cee--------------------------------E------EEE-ecCCCCe
Q 005656 300 VYHRVNGLLATVADDLVIRLFDVVA--LRM--------------------------------V------RKF-EGHTDRI 338 (685)
Q Consensus 300 ~~~~~~~~l~~~~~dg~I~i~d~~~--~~~--------------------------------~------~~~-~~h~~~I 338 (685)
+|+|++.++++| .|+.|++|++.+ ++. . ..+ .+|...|
T Consensus 251 ~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 329 (372)
T 1k8k_C 251 TFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV 329 (372)
T ss_dssp EEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred EEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence 999999988888 899999999988 421 0 223 4899999
Q ss_pred EEEEEc-CCC---CEEEEEeCCCcEEEEEcCCCc
Q 005656 339 TDFCFS-EDG---KWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 339 ~~l~~s-pdg---~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
++++|+ ++| ++|++|+.||.|++|++.+++
T Consensus 330 ~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 330 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 999966 677 999999999999999998754
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-37 Score=321.06 Aligned_cols=296 Identities=16% Similarity=0.256 Sum_probs=258.7
Q ss_pred eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceE
Q 005656 38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 117 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~ 117 (685)
...+. +|.+.|++++|+|++++|++++.||.|++||+..+ +.+..+.+|...|.+++|+|++++|++++.||.|+
T Consensus 25 ~~~l~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 25 AIKLT-GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG----ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEE-CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred cEEEE-EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc----hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 34565 99999999999999999999999999999998876 67788889999999999999999999999999999
Q ss_pred EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656 118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 197 (685)
Q Consensus 118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 197 (685)
+||+.+++....+
T Consensus 100 iwd~~~~~~~~~~------------------------------------------------------------------- 112 (369)
T 3zwl_B 100 LWDVSNGQCVATW------------------------------------------------------------------- 112 (369)
T ss_dssp EEETTTCCEEEEE-------------------------------------------------------------------
T ss_pred EEECCCCcEEEEe-------------------------------------------------------------------
Confidence 9999877665544
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCccccccccc---cccccCCCCc--CEEEEEEcCCCCEE
Q 005656 198 CPENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDM---SERSNYAHNG--EVVGVACDSTNTLM 267 (685)
Q Consensus 198 ~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~---~~~~~~~h~~--~v~~l~~~~~~~~l 267 (685)
.+...+.+++|+|+++++++++.+ |.|.+||+..+.....+... .......|.+ .+.+++|+|+++++
T Consensus 113 --~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (369)
T 3zwl_B 113 --KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190 (369)
T ss_dssp --ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEE
T ss_pred --ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEE
Confidence 235679999999999999999999 99999999877654333211 1111224555 99999999999999
Q ss_pred EEEECCCeEEEEECCC-CceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC
Q 005656 268 ISAGYHGDIKVWDFKG-RDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 345 (685)
Q Consensus 268 ~s~s~dg~i~iwd~~~-~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 345 (685)
++++.||.|++||+.+ +.....+.. ...+.+++|+|++.+|++++.|+.|++||+.+++.+..+. +...+..++|+|
T Consensus 191 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~ 269 (369)
T 3zwl_B 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP 269 (369)
T ss_dssp EEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS
T ss_pred EEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC
Confidence 9999999999999998 677777764 5889999999999999999999999999999999999888 788899999999
Q ss_pred CCCEEEEEeCCC--------------cEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCC
Q 005656 346 DGKWLLSSGMDG--------------SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRCM 409 (685)
Q Consensus 346 dg~~l~s~s~Dg--------------~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~ 409 (685)
+++++++++.++ .+++||+.+++.+..+..+. .|++++|+|+|++|++++.|+ .|++|+....
T Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~v~iw~~~~~ 347 (369)
T 3zwl_B 270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG-FIRLHHFEKS 347 (369)
T ss_dssp SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEEECHH
T ss_pred CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC-eEEEEECccc
Confidence 999999999888 89999999999999988655 499999999999999999997 9999997643
No 53
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.4e-38 Score=331.74 Aligned_cols=287 Identities=15% Similarity=0.208 Sum_probs=235.0
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|.+.|++++|+|+|..+||+|+.||.|+|||+.+++....+. .+|.+.|.+++|+| ++++|++++.|+.|++||+...
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS 151 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC
Confidence 788999999999993399999999999999999888777665 26999999999999 7799999999999999998742
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
....+....+|...|.+++|+|++++|++++.||.|++||+ +++....+.
T Consensus 152 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~--------------------------- 201 (383)
T 3ei3_B 152 --VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK--------------------------- 201 (383)
T ss_dssp --EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE---------------------------
T ss_pred --ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec---------------------------
Confidence 11222333445688999999999999999999999999998 343333321
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEECCCCccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
.+...|.+++|+|+++ ++++|+.||.|++||+.++...
T Consensus 202 -----------------------------------------~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 240 (383)
T 3ei3_B 202 -----------------------------------------LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240 (383)
T ss_dssp -----------------------------------------CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred -----------------------------------------cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence 5678899999999999 9999999999999999984432
Q ss_pred cccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeecC------------------CceeE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------------------CSLVK 298 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------~~i~~ 298 (685)
.... ...+|...|.+++|+| ++.+|++++.||.|++||+++++....+..+ ..+..
T Consensus 241 ~~~~-----~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 315 (383)
T 3ei3_B 241 NSYI-----AEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV 315 (383)
T ss_dssp TCEE-----EEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred cceE-----EEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence 2211 1117899999999999 9999999999999999999987765544421 23344
Q ss_pred EEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 299 IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
++++|++++ +|+.|+.|++||+.+++.+..+.+ |...+..++|+|++++|++|+ ||.|++||+.+
T Consensus 316 ~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 316 AGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 555666655 667899999999999999999987 567788889999999999997 99999999874
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.9e-38 Score=329.84 Aligned_cols=296 Identities=15% Similarity=0.200 Sum_probs=253.5
Q ss_pred eEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC--CCceeEecccCCCCCeEEEEecC----C---CEEE
Q 005656 38 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG--DPRLLRFRSGHSAPPLCIRFYAN----G---RHIL 108 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~~~h~~~v~~i~~~~~----~---~~l~ 108 (685)
...+. +|.+.|++++|+| ++|++++.||+|++|++..... ....+..+.+|..+|.+++|+|+ + ++|+
T Consensus 9 ~~~~~-~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 9 ANAGK-AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEESS-CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhh-hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 34444 8999999999998 7999999999999999987631 12256777799999999999999 9 9999
Q ss_pred EEeCCCceEEEEeecCce-----eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656 109 SAGQDRAFRLFSVIQDQQ-----SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 183 (685)
Q Consensus 109 s~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 183 (685)
+++.||.|++|++.+++. ...+.
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~---------------------------------------------------- 113 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLD---------------------------------------------------- 113 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEEC----------------------------------------------------
T ss_pred EEcCCCCEEEEEccCCcccccccceeec----------------------------------------------------
Confidence 999999999999987764 22221
Q ss_pred EcCccccCceeecCCCCC-----CCCeEEEEEc----cCCCE-EEEEecCCcEEEEECCC------Ccccc-----cccc
Q 005656 184 RLQNFVLGEHILRPCPEN-----PTAVKACTIS----ACGNF-AVLGTAGGWIERFNLQS------GISRG-----SYLD 242 (685)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s----~~g~~-l~~g~~dg~i~~~d~~~------~~~~~-----~~~~ 242 (685)
.+ ...|.+++|+ |++++ +++|+.+|.|++||+.+ +.... .+..
T Consensus 114 ----------------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 177 (397)
T 1sq9_A 114 ----------------LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 177 (397)
T ss_dssp ----------------CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE
T ss_pred ----------------ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeee
Confidence 33 4789999999 99999 99999999999999988 55544 3210
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-------CCceeEEEEeecCCEEEEEeCC-
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-------GCSLVKIVYHRVNGLLATVADD- 314 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~d- 314 (685)
. ......|...|.+++|+|++ ++++++.||.|++||+++++.+..+.. ...+.+++|+|++++|++++.|
T Consensus 178 ~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~ 255 (397)
T 1sq9_A 178 T-VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 255 (397)
T ss_dssp E-ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred e-eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC
Confidence 0 00002688999999999999 999999999999999999999888876 7899999999999999999999
Q ss_pred --CeEEEEEcCCCeeEEEEec-------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe-----
Q 005656 315 --LVIRLFDVVALRMVRKFEG-------------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH----- 374 (685)
Q Consensus 315 --g~I~i~d~~~~~~~~~~~~-------------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~----- 374 (685)
+.|++||+.+++.+..+.+ |...|++++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 256 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 335 (397)
T 1sq9_A 256 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 335 (397)
T ss_dssp TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG
T ss_pred CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCc
Confidence 9999999999999999998 99999999999999999999999999999999999999998
Q ss_pred -e----------------ccceEEEEEcCCC----------CeEEEEEeCCCeEEEEEcC
Q 005656 375 -V----------------DVSITALSLSPNM----------DVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 375 -~----------------~~~v~~v~~spdg----------~~Lat~~~d~~~I~lW~~~ 407 (685)
. ..+|++++|+|+| ++|++++.|+ .|++|+..
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg-~i~iw~~~ 394 (397)
T 1sq9_A 336 IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR-SIRWFREA 394 (397)
T ss_dssp CSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT-EEEEEEEE
T ss_pred ccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC-cEEEEEcC
Confidence 4 3559999999999 7999999997 99999854
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=315.60 Aligned_cols=290 Identities=16% Similarity=0.178 Sum_probs=247.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|+++|++++| |+++ +|++|+.||.|++||+.+++....+. .|...|.+++|+|++++|++++.|+.|++|++.....
T Consensus 17 h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 17 HDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG 93 (313)
T ss_dssp CSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred CCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence 8899999999 9998 89999999999999999999888888 8999999999999999999999999999999876532
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
.+.+..+.+|..+|.++.| +++++++++.||.|++|| .+.....+.
T Consensus 94 -~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~----------------------------- 139 (313)
T 3odt_A 94 -EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ----------------------------- 139 (313)
T ss_dssp -SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-----------------------------
T ss_pred -CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-----------------------------
Confidence 2445566899999999999 567999999999999999 333322221
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGS 239 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~ 239 (685)
.+...+.+++++| +++++++++.+|.|++||.. .....
T Consensus 140 ---------------------------------------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~ 178 (313)
T 3odt_A 140 ---------------------------------------AHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKT 178 (313)
T ss_dssp ---------------------------------------CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEE
T ss_pred ---------------------------------------cCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEE
Confidence 5678899999988 99999999999999999933 33333
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEE
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIR 318 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~ 318 (685)
+. ..|...|.+++|+|++. +++++.||.|++||+++++.+..+.. ...+.+++|+|++ .+++++.||.|+
T Consensus 179 ~~-------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~ 249 (313)
T 3odt_A 179 FS-------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVR 249 (313)
T ss_dssp EC-------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEE
T ss_pred Ee-------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEE
Confidence 32 14899999999999988 99999999999999999999888874 5889999999999 588999999999
Q ss_pred EEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc
Q 005656 319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 378 (685)
Q Consensus 319 i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~ 378 (685)
+||+.+++.+..+..|...|++++|+|+++ +++++.||.|++||+.+++.+........
T Consensus 250 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 308 (313)
T 3odt_A 250 IWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIKGE 308 (313)
T ss_dssp EECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-------
T ss_pred EEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhhhhh
Confidence 999999999999999999999999999998 66789999999999999887766554433
No 56
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.1e-38 Score=340.26 Aligned_cols=293 Identities=16% Similarity=0.223 Sum_probs=232.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|...|+||+|+|.+..+||+|+.||.|+|||+.++.....+. .+|.+.|++|+|+| ++.+|+|++.||+|++||+...
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 567899999999654499999999999999998775443332 38999999999998 6889999999999999998754
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
. .+.+.....+...+.+++|+|++++|++|+.||.|++||+.... ...
T Consensus 198 ~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~----------------------------- 245 (435)
T 4e54_B 198 I--LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWN----------------------------- 245 (435)
T ss_dssp E--EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCC-----------------------------
T ss_pred c--eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEE-----------------------------
Confidence 1 12222233445678899999999999999999999999985321 111
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEECCCCccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
...|...|.+++|+|++. ++++|+.||.|++||++++...
T Consensus 246 ---------------------------------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~ 286 (435)
T 4e54_B 246 ---------------------------------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK 286 (435)
T ss_dssp ---------------------------------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS
T ss_pred ---------------------------------------EecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc
Confidence 116788899999999886 7788999999999999987765
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-------CceeEEEEeecCCEEEE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLAT 310 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~ 310 (685)
..+. ...+|...|++++|+|++.+|++++.||.|++||+.++.....+..+ ..+....|+|++.++++
T Consensus 287 ~~~~-----~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 287 ASFL-----YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp SCCS-----BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred ceEE-----EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEE
Confidence 5442 22379999999999999999999999999999999988766555332 23445677887777776
Q ss_pred Ee------------CCCeEEEEEcCCCeeEEEEe-cCCCCeEEE-EEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 311 VA------------DDLVIRLFDVVALRMVRKFE-GHTDRITDF-CFSEDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 311 ~~------------~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l-~~spdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
++ .++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++.+++..
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 64 23579999999999988875 688889887 6999999999876 789999999988653
No 57
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.4e-38 Score=329.11 Aligned_cols=295 Identities=16% Similarity=0.212 Sum_probs=245.9
Q ss_pred CCCcEEEEEEccC---CCCEEEEEeCCCcEEEEeCCCCeeeEEeec----ccccCeeEEEEeCC----CcEEEEecCCCc
Q 005656 1 MRGAVTALAFSSD---GQPLLASGASSGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFAN----EPVLMSASADNS 69 (685)
Q Consensus 1 h~~~V~~l~fspd---g~~~latg~~dg~I~vwd~~~~~~~~~~~~----~h~~~V~~l~~sp~----~~~l~s~s~D~~ 69 (685)
|+++|++++|+|+ +..++++++.++.|++||+.+++.+..+.. .|...|++++|+|+ +++|++++.||.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 7899999999985 544677777788999999998877666651 25678999999999 679999999999
Q ss_pred EEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656 70 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 148 (685)
Q Consensus 70 v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (685)
|++||+.++ +.+..+.+|..+|.+++|+| ++++|++++.||.|++||+.+++....+..
T Consensus 97 i~v~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------- 156 (366)
T 3k26_A 97 IRIINPITM----QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG---------------- 156 (366)
T ss_dssp EEEECTTTC----CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS----------------
T ss_pred EEEEEchhc----eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc----------------
Confidence 999998876 67777889999999999999 899999999999999999987765544420
Q ss_pred cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656 149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER 228 (685)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~ 228 (685)
...+...|.+++|+|+++++++|+.||.|++
T Consensus 157 -------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 187 (366)
T 3k26_A 157 -------------------------------------------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 187 (366)
T ss_dssp -------------------------------------------------TTSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -------------------------------------------------cccccCceeEEEECCCCCEEEEecCCCCEEE
Confidence 1157788999999999999999999999999
Q ss_pred EECCCCcccccccc--------------------ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce--
Q 005656 229 FNLQSGISRGSYLD--------------------MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL-- 286 (685)
Q Consensus 229 ~d~~~~~~~~~~~~--------------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-- 286 (685)
||+.++.....+.. ........|...|.+++|+ ++++++++.||.|++||+.++..
T Consensus 188 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~ 265 (366)
T 3k26_A 188 WRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDI 265 (366)
T ss_dssp EESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCG
T ss_pred EECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccc
Confidence 99998766544321 0001112499999999998 77999999999999999987643
Q ss_pred ------------EEEeec-CCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCe----eEEEEecC--CCCeEEEEEcC
Q 005656 287 ------------KSRWEV-GCSLVKIVYHRV--NGLLATVADDLVIRLFDVVALR----MVRKFEGH--TDRITDFCFSE 345 (685)
Q Consensus 287 ------------~~~~~~-~~~i~~~~~~~~--~~~l~~~~~dg~I~i~d~~~~~----~~~~~~~h--~~~I~~l~~sp 345 (685)
+..+.. ...+.+++|+|+ +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 266 DKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp GGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred cccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence 444443 478999999999 9999999999999999999875 45578887 78999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCC
Q 005656 346 DGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 346 dg~~l~s~s~Dg~I~iwd~~~ 366 (685)
++++|++++.||.|++||+.+
T Consensus 346 ~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC--
T ss_pred CCCeEEEEeCCCEEEEEEecC
Confidence 999999999999999999853
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.2e-38 Score=330.19 Aligned_cols=331 Identities=16% Similarity=0.237 Sum_probs=240.8
Q ss_pred CCCcEEEEEEcc-CCCCEEEEEeCCCcEEEEeCCCCeeeEEee------------cccccCeeEEEEeC-CCcEEEEecC
Q 005656 1 MRGAVTALAFSS-DGQPLLASGASSGVISIWNLEKRRLQSVIR------------EAHDNAIISLHFFA-NEPVLMSASA 66 (685)
Q Consensus 1 h~~~V~~l~fsp-dg~~~latg~~dg~I~vwd~~~~~~~~~~~------------~~h~~~V~~l~~sp-~~~~l~s~s~ 66 (685)
|+++|++++|+| +|+ +||+|+.||.|++||+.++.....+. .+|...|.+++|+| ++.+|++++.
T Consensus 42 h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 42 HGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred cCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 889999999999 998 99999999999999999876654443 25999999999999 7789999999
Q ss_pred CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC---CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656 67 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 143 (685)
Q Consensus 67 D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 143 (685)
||.|++||+..+ +....+ .+...+.++.|+|. +.++++++.||.|++||+.+++....+.
T Consensus 121 d~~i~iwd~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------------ 183 (408)
T 4a11_B 121 DKTLKVWDTNTL----QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ------------ 183 (408)
T ss_dssp TSEEEEEETTTT----EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC------------
T ss_pred CCeEEEeeCCCC----ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec------------
Confidence 999999999876 455444 37888999999985 4599999999999999998776554442
Q ss_pred ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC-EEEEEec
Q 005656 144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTA 222 (685)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~ 222 (685)
.+...|.+++|+|+++ .+++|+.
T Consensus 184 --------------------------------------------------------~~~~~v~~~~~~~~~~~ll~~~~~ 207 (408)
T 4a11_B 184 --------------------------------------------------------GHRQEILAVSWSPRYDYILATASA 207 (408)
T ss_dssp --------------------------------------------------------CCCSCEEEEEECSSCTTEEEEEET
T ss_pred --------------------------------------------------------CCCCcEEEEEECCCCCcEEEEEcC
Confidence 5678899999999998 5899999
Q ss_pred CCcEEEEECCCCcccc-ccc-------cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-
Q 005656 223 GGWIERFNLQSGISRG-SYL-------DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG- 293 (685)
Q Consensus 223 dg~i~~~d~~~~~~~~-~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 293 (685)
+|.|++||++++.... .+. .........|...|.+++|+|+++++++++.||.|++||+.+++........
T Consensus 208 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 287 (408)
T 4a11_B 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV 287 (408)
T ss_dssp TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC
T ss_pred CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc
Confidence 9999999998765221 110 0011122479999999999999999999999999999999988765443221
Q ss_pred -----CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656 294 -----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 294 -----~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
..+........+..+++++.++.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 288 CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 222222333445577777889999999999999999999999999999999999999999999999999999998
Q ss_pred eeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 369 QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 369 ~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.+......... ..+.|......+.+.+++.+++|+++
T Consensus 368 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 368 PVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ---------------------------------------
T ss_pred ccCCCCceEec--cccccccceeecccCccCceeecCCc
Confidence 87665443332 23344333333333344599999865
No 59
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.2e-38 Score=330.81 Aligned_cols=296 Identities=14% Similarity=0.180 Sum_probs=245.8
Q ss_pred EeCCCCeeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEE
Q 005656 30 WNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHI 107 (685)
Q Consensus 30 wd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l 107 (685)
|++...+....+. +|.+.|++++|+|++ ++|++|+.||.|++|++..... .......+|...|.+++|+| ++++|
T Consensus 58 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l 134 (383)
T 3ei3_B 58 RSLKSYKLHRTAS-PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK--TSFIQGMGPGDAITGMKFNQFNTNQL 134 (383)
T ss_dssp HHHTTCEEEEEEC-CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC--EEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred ccccccceEEecc-CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc--ceeeecCCcCCceeEEEeCCCCCCEE
Confidence 3445566777777 999999999999999 8999999999999999986531 22223347999999999999 68999
Q ss_pred EEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCc
Q 005656 108 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 187 (685)
Q Consensus 108 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 187 (685)
++++.||.|++||+... ....+.
T Consensus 135 ~s~~~d~~i~iwd~~~~-~~~~~~-------------------------------------------------------- 157 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSGS-VIQVFA-------------------------------------------------------- 157 (383)
T ss_dssp EEEETTTEEEEEETTSC-EEEEEE--------------------------------------------------------
T ss_pred EEEeCCCEEEEEECCCC-ceEEEe--------------------------------------------------------
Confidence 99999999999999742 222221
Q ss_pred cccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCC-E
Q 005656 188 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-L 266 (685)
Q Consensus 188 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~ 266 (685)
....+...+.+++|+|+++++++|+.||.|++||+. +.....+. +|...|.+++|+|+++ +
T Consensus 158 ---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~--------~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 158 ---------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK--------LHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp ---------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE--------CSSSCEEEEEECSSCTTE
T ss_pred ---------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec--------cCCCcEEEEEECCCCCCE
Confidence 111445789999999999999999999999999994 54444443 8999999999999998 9
Q ss_pred EEEEECCCeEEEEECCC----CceEEEeecCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC------
Q 005656 267 MISAGYHGDIKVWDFKG----RDLKSRWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHT------ 335 (685)
Q Consensus 267 l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------ 335 (685)
+++++.|+.|++||+.+ +.+...+.+...+.+++|+| ++.+|++++.|+.|++||+.+++.+..+.+|.
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 299 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH 299 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence 99999999999999997 67777788889999999999 99999999999999999999988777777553
Q ss_pred -----------CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec--cc-eEEEEEcCCCCeEEEEEeCCCeE
Q 005656 336 -----------DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--VS-ITALSLSPNMDVLATAHVDQNGV 401 (685)
Q Consensus 336 -----------~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~--~~-v~~v~~spdg~~Lat~~~d~~~I 401 (685)
+.+..++|+|+|++ +++.||.|++||+.+++++..+..+ .. +.+++|+|+|++|++++ |+ .|
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~-~i 375 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF-NI 375 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT-EE
T ss_pred ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC-cE
Confidence 23445666777766 7779999999999999999998753 33 77789999999999997 76 99
Q ss_pred EEEEcC
Q 005656 402 YLWVNR 407 (685)
Q Consensus 402 ~lW~~~ 407 (685)
++|+..
T Consensus 376 ~iw~~~ 381 (383)
T 3ei3_B 376 LIWNRE 381 (383)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999865
No 60
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-37 Score=351.43 Aligned_cols=294 Identities=21% Similarity=0.312 Sum_probs=250.3
Q ss_pred eeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCC-CceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 37 LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
....+. +|.+.|++++|+|++ ++|+||+.|++|++|++...... ......+.+|...|.+++|+|++++|++|+.||
T Consensus 374 ~~~~l~-~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 374 LKGTMR-AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEE-CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred hhhhcc-cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 345566 999999999999875 69999999999999999765332 234566789999999999999999999999999
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
+|++||+.++.....+.
T Consensus 453 ~v~vwd~~~~~~~~~~~--------------------------------------------------------------- 469 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFV--------------------------------------------------------------- 469 (694)
T ss_dssp EEEEEETTTTEEEEEEE---------------------------------------------------------------
T ss_pred cEEEEECCCCcceeEEe---------------------------------------------------------------
Confidence 99999998776555442
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC--CEEEEEEC
Q 005656 195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--TLMISAGY 272 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~s~ 272 (685)
.|...|.+++|+|+++++++|+.||.|++||+.......... ...+|...|.+++|+|++ ..+++++.
T Consensus 470 -----~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 470 -----GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE-----GGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp -----CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-----STTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred -----CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc-----CCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 678899999999999999999999999999986553322211 123799999999999986 58999999
Q ss_pred CCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656 273 HGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL 351 (685)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~ 351 (685)
||+|++||+.++++...+..+ ..|.+++|+|++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|+
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLC 618 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEE
Confidence 999999999999888877654 7899999999999999999999999999999999888764 56799999999999888
Q ss_pred EEeCCCcEEEEEcCCCceeeEEeecc--------------------ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 352 SSGMDGSLRIWDVILARQIDAIHVDV--------------------SITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 352 s~s~Dg~I~iwd~~~~~~i~~~~~~~--------------------~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
+++ |+.|++||+.++..+..+..+. .+++++|||+|++|++++.|+ .|++|+..
T Consensus 619 ~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg-~i~iW~i~ 692 (694)
T 3dm0_A 619 AAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG-VIRVWGIG 692 (694)
T ss_dssp EEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS-EEEEEEC-
T ss_pred EEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC-eEEEEecc
Confidence 776 5569999999998887764321 278999999999999999997 99999864
No 61
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-37 Score=329.10 Aligned_cols=280 Identities=15% Similarity=0.286 Sum_probs=250.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.+.|++++|+|+|+ +|++|+.||.|++|| .+++.+..+. +|...|.+++|+|++++|++++.|+.|++|++..+
T Consensus 107 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-- 181 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGN-SIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG-- 181 (425)
T ss_dssp -CBCEEEEEECTTSS-EEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT--
T ss_pred CCCceEEEEEcCCCC-EEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC--
Confidence 467999999999998 999999999999999 6777788887 89999999999999999999999999999999876
Q ss_pred CCceeEecccCCCC---------------CeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 81 DPRLLRFRSGHSAP---------------PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 81 ~~~~~~~~~~h~~~---------------v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
+.+..+..|... +.++.|+|++ .+++++.||.|++||+.+++....+.
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~-------------- 244 (425)
T 1r5m_A 182 --TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI-------------- 244 (425)
T ss_dssp --EEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC--------------
T ss_pred --cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec--------------
Confidence 666666677766 9999999986 58899999999999998765544432
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW 225 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 225 (685)
.+...+.+++|+|+++++++++.+|.
T Consensus 245 ------------------------------------------------------~~~~~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 245 ------------------------------------------------------GHHGPISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp ------------------------------------------------------CCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ------------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCE
Confidence 56778999999999999999999999
Q ss_pred EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeec
Q 005656 226 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRV 304 (685)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~ 304 (685)
|++||+.++.....+. .|...|.+++|+|++ ++++++.||.|++||+.+++.+..+.. ...+.+++|+|+
T Consensus 271 i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFY--------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD 341 (425)
T ss_dssp EEEECSSSBSCSEEEC--------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT
T ss_pred EEEEECCCCccceEec--------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC
Confidence 9999999987776654 799999999999999 999999999999999999998888775 479999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCe--------------------eEEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656 305 NGLLATVADDLVIRLFDVVALR--------------------MVRKFEGHTD--RITDFCFSEDGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 305 ~~~l~~~~~dg~I~i~d~~~~~--------------------~~~~~~~h~~--~I~~l~~spdg~~l~s~s~Dg~I~iw 362 (685)
+++|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++.||.|++|
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 421 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVV 421 (425)
T ss_dssp SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEE
Confidence 9999999999999999999888 8999999977 99999999999999999999999999
Q ss_pred EcC
Q 005656 363 DVI 365 (685)
Q Consensus 363 d~~ 365 (685)
+++
T Consensus 422 ~~~ 424 (425)
T 1r5m_A 422 AIP 424 (425)
T ss_dssp ECC
T ss_pred eec
Confidence 985
No 62
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-38 Score=336.97 Aligned_cols=323 Identities=15% Similarity=0.160 Sum_probs=259.0
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecC---CCCCCce
Q 005656 9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDT---TDGDPRL 84 (685)
Q Consensus 9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~---~~~~~~~ 84 (685)
.|+|+++ .+++++ .|+ .+++.+..+..+|.+.|++++|+| ++++|++|+.||+|++||+.. +. ..+.
T Consensus 34 ~f~~~~~-~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~ 104 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSS 104 (437)
T ss_dssp GGCCCCC-CCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSC
T ss_pred hcCCccc-cccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccce
Confidence 3678887 666554 488 556778888449999999999999 999999999999999999876 32 1122
Q ss_pred eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee---cCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI---QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
.... +|..+|.+++|+|++++|++++.||+|++||+. .++........
T Consensus 105 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------------------------- 155 (437)
T 3gre_A 105 SLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---------------------------- 155 (437)
T ss_dssp SEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE----------------------------
T ss_pred eeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc----------------------------
Confidence 2222 599999999999999999999999999999995 44333222100
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEE--EccCCCEEEEEecCCcEEEEECCCCccccc
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT--ISACGNFAVLGTAGGWIERFNLQSGISRGS 239 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~ 239 (685)
.+....+.. ..+...+.++. ++++++++++|+.||.|++||++++.....
T Consensus 156 -----------------~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 156 -----------------CIRKINLKN-----------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp -----------------EEEEEEGGG-----------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred -----------------eeEEEEccC-----------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 001111000 01455677777 678999999999999999999999988777
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee--cCCceeEEEEee----cCCEEEEEeC
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKIVYHR----VNGLLATVAD 313 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~----~~~~l~~~~~ 313 (685)
+.. ..|.+.|++++|+|++.+|++|+.||.|++||+++++.+..+. +..+|.+++++| ++.+|++|+.
T Consensus 208 ~~~------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 208 IEN------SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp EEC------CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred Ecc------CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC
Confidence 641 1288999999999999999999999999999999999988774 457899996664 5779999999
Q ss_pred CCeEEEEEcCCCeeEEEEecC--------------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005656 314 DLVIRLFDVVALRMVRKFEGH--------------------------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~~~~h--------------------------~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~ 367 (685)
||.|++||+.+++.+..+.+| ...|++++|+ ++++|++|+.||.|++||+.++
T Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence 999999999999999888755 3457888998 7789999999999999999999
Q ss_pred ceeeEEee--------------------------------------ccceEEEEEcCC--CCeEEEEEeCCCeEEEEE
Q 005656 368 RQIDAIHV--------------------------------------DVSITALSLSPN--MDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 368 ~~i~~~~~--------------------------------------~~~v~~v~~spd--g~~Lat~~~d~~~I~lW~ 405 (685)
+.+..+.. ...|++++|+++ +.+|++++.|| .|+||+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG-~I~iw~ 437 (437)
T 3gre_A 361 SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSG-LIGIFQ 437 (437)
T ss_dssp GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTS-CEEEEC
T ss_pred ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCc-eEEEeC
Confidence 88777653 445999999998 78999999987 999994
No 63
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.9e-37 Score=326.63 Aligned_cols=290 Identities=16% Similarity=0.240 Sum_probs=246.0
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~ 83 (685)
++.|+||+++ +||+|. |++|+|||..++++...+. .+|...|++++|+|+|++|++|+.||+|++||+.++ +
T Consensus 108 ~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~----~ 180 (420)
T 4gga_A 108 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----K 180 (420)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT----E
T ss_pred ceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC----c
Confidence 4679999863 788876 8999999999999887765 367889999999999999999999999999999877 7
Q ss_pred eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
.+....+|...+.++.++ +..|++|+.|+.+++||..........
T Consensus 181 ~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~--------------------------------- 225 (420)
T 4gga_A 181 RLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT--------------------------------- 225 (420)
T ss_dssp EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE---------------------------------
T ss_pred EEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE---------------------------------
Confidence 888889999999988775 669999999999999998654322111
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
...+...+..+.++|+|+++++++.||.+++|+..++.......
T Consensus 226 ----------------------------------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~-- 269 (420)
T 4gga_A 226 ----------------------------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-- 269 (420)
T ss_dssp ----------------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS--
T ss_pred ----------------------------------ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee--
Confidence 01677889999999999999999999999999998876533221
Q ss_pred cccccCCCCcCEEEEEEcCCCC-EEEEE--ECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEe--CCCeEE
Q 005656 244 SERSNYAHNGEVVGVACDSTNT-LMISA--GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIR 318 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~~-~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~I~ 318 (685)
.....|...|.+++|+|.+. .++++ +.|++|++||+.+++....+..+..+.++.|+|+++.+++++ .|+.|+
T Consensus 270 --~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~ 347 (420)
T 4gga_A 270 --QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 347 (420)
T ss_dssp --EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred --eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEE
Confidence 12237899999999999764 55544 479999999999999999999999999999999999888765 689999
Q ss_pred EEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656 319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 374 (685)
Q Consensus 319 i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~ 374 (685)
|||+.+++++.++.+|.+.|++++|+|||++|+||+.||+|+|||+....+.....
T Consensus 348 iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 99999999999999999999999999999999999999999999998766555443
No 64
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.9e-38 Score=325.74 Aligned_cols=285 Identities=14% Similarity=0.191 Sum_probs=225.5
Q ss_pred CcEEEEEEccCCCCEEEEEeCCC-------cEEEEeCCCCee----------eEEeecccccCeeEEEEeCCCcEEEEe-
Q 005656 3 GAVTALAFSSDGQPLLASGASSG-------VISIWNLEKRRL----------QSVIREAHDNAIISLHFFANEPVLMSA- 64 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg-------~I~vwd~~~~~~----------~~~~~~~h~~~V~~l~~sp~~~~l~s~- 64 (685)
-||+|++|+|||+ +||+|+.+. .|++|++..+.. ...+. +|...|.+++++ ++.+++|
T Consensus 15 ~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~-~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 15 YPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALE-DNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECC-TTSCCCCEEEEE--TTEEEEEC
T ss_pred CCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEcc-CCCCceEEEEeC--CCEEEEEE
Confidence 3899999999999 999987533 599999876432 12333 788899988876 4455554
Q ss_pred ----------cCCCcEEEEEecCCCCCCceeEec-----ccCCCCCeEEEEecCCCEEEEEe--CCCceEEEEeecCcee
Q 005656 65 ----------SADNSIKMWIFDTTDGDPRLLRFR-----SGHSAPPLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQS 127 (685)
Q Consensus 65 ----------s~D~~v~iWd~~~~~~~~~~~~~~-----~~h~~~v~~i~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~ 127 (685)
+.|+++++|+++............ ..+...+.+++|+|||+++++++ .|++|++||+.+++..
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 457889999998765433333222 23445688999999999987554 6899999999887765
Q ss_pred eEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE
Q 005656 128 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA 207 (685)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~ 207 (685)
..+ .+...|.+
T Consensus 171 ~~~---------------------------------------------------------------------~~~~~V~~ 181 (365)
T 4h5i_A 171 FEI---------------------------------------------------------------------ETRGEVKD 181 (365)
T ss_dssp EEE---------------------------------------------------------------------ECSSCCCE
T ss_pred EEe---------------------------------------------------------------------CCCCceEE
Confidence 544 34567999
Q ss_pred EEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC----eEEEEECCC
Q 005656 208 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG----DIKVWDFKG 283 (685)
Q Consensus 208 ~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg----~i~iwd~~~ 283 (685)
++|+|+|+++++++.+ .+.+|+..++...... ....|...|.+++|+|+++++++++.|+ .++.|++..
T Consensus 182 v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 182 LHFSTDGKVVAYITGS-SLEVISTVTGSCIARK------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp EEECTTSSEEEEECSS-CEEEEETTTCCEEEEE------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred EEEccCCceEEeccce-eEEEEEeccCcceeee------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence 9999999999999855 5777777777654332 1237889999999999999999999887 688899876
Q ss_pred CceE----EEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656 284 RDLK----SRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 284 ~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~spdg~~l~s~s~Dg 357 (685)
.... ..+. +..+|++++|+|+|++||+|+.|++|+|||+.+++++..+ .+|...|++++|||||++|||||.|+
T Consensus 255 ~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 255 GNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp TEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred ceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence 6432 2222 3478999999999999999999999999999999999886 78999999999999999999999999
Q ss_pred cEEEEEcCCC
Q 005656 358 SLRIWDVILA 367 (685)
Q Consensus 358 ~I~iwd~~~~ 367 (685)
+|+|||++..
T Consensus 335 tvrvw~ip~~ 344 (365)
T 4h5i_A 335 TIHIIKLPLN 344 (365)
T ss_dssp EEEEEECCTT
T ss_pred eEEEEEcCCC
Confidence 9999999754
No 65
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-37 Score=326.38 Aligned_cols=284 Identities=15% Similarity=0.256 Sum_probs=242.4
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
+.+++|++ . .+++++.||.|++||+.+++....+...|...|.+++|+|++++|++|+.||.|++||+..+ +.
T Consensus 96 ~~~~~~s~--~-~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~ 168 (401)
T 4aez_A 96 LNLLDWSN--L-NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ----TK 168 (401)
T ss_dssp CBCEEECT--T-SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CE
T ss_pred EEEEeecC--C-CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC----eE
Confidence 44567775 3 46677889999999999999988888569999999999999999999999999999999876 67
Q ss_pred eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc-eeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
+..+.+|...|.+++|+ ++++++++.||.|++||+.... ....+.
T Consensus 169 ~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------------------- 214 (401)
T 4aez_A 169 LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-------------------------------- 214 (401)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE--------------------------------
T ss_pred EEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc--------------------------------
Confidence 77888999999999994 5699999999999999997432 222221
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
.+...|.+++|+|+++++++|+.||.|++||+.++.....+.
T Consensus 215 ------------------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-- 256 (401)
T 4aez_A 215 ------------------------------------GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-- 256 (401)
T ss_dssp ------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC--
T ss_pred ------------------------------------CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec--
Confidence 677899999999999999999999999999999987776654
Q ss_pred cccccCCCCcCEEEEEEcCCCC-EEEEEE--CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE--eCCCeEE
Q 005656 244 SERSNYAHNGEVVGVACDSTNT-LMISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIR 318 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~~-~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~I~ 318 (685)
.|...|.+++|+|++. ++++++ .||.|++||+.+++....+.++..+.+++|+|++++++++ +.||.|+
T Consensus 257 ------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 257 ------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp ------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred ------CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEE
Confidence 7999999999999764 556654 6999999999999999999999999999999999999995 4899999
Q ss_pred EEEcCCCeeEE--EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE
Q 005656 319 LFDVVALRMVR--KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 373 (685)
Q Consensus 319 i~d~~~~~~~~--~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~ 373 (685)
+||+.+++... .+.+|...|++++|+|+|++|++++.||.|++|++.+++.+...
T Consensus 331 v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 99999975544 46799999999999999999999999999999999998877654
No 66
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-39 Score=346.77 Aligned_cols=324 Identities=12% Similarity=0.069 Sum_probs=240.1
Q ss_pred CCCcEEEEEEccCC---------CCEEEE-------------------EeCCCcEEEEeCCCCeee----EEeecccccC
Q 005656 1 MRGAVTALAFSSDG---------QPLLAS-------------------GASSGVISIWNLEKRRLQ----SVIREAHDNA 48 (685)
Q Consensus 1 h~~~V~~l~fspdg---------~~~lat-------------------g~~dg~I~vwd~~~~~~~----~~~~~~h~~~ 48 (685)
+.++|.+|+|+|++ + +||+ |+.||+|+|||+.+++.. ..+. +|.+.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~ 209 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGE 209 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEE-ECCCS
T ss_pred CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-ecCCc
Confidence 35788889998886 4 6666 457789999999877642 3344 67899
Q ss_pred eeEEEEeCC------CcEEEEecCCCcEEEEEecCCCCC-------CceeEecccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656 49 IISLHFFAN------EPVLMSASADNSIKMWIFDTTDGD-------PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 115 (685)
Q Consensus 49 V~~l~~sp~------~~~l~s~s~D~~v~iWd~~~~~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~ 115 (685)
|.+++|+|+ +.+||+++.||+|++||+..+... ......+.+|..+|++++|++++ .|++|+.||+
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dgt 288 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGF 288 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSE
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCE
Confidence 999999997 579999999999999999765321 12234567899999999999864 8999999999
Q ss_pred eEEEEeecCceee-EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 116 FRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 116 i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
|++||+.++.... .+.
T Consensus 289 V~lWD~~~~~~~~~~~~--------------------------------------------------------------- 305 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYDQ--------------------------------------------------------------- 305 (524)
T ss_dssp EEEEETTBCSSCSEEEE---------------------------------------------------------------
T ss_pred EEEEECCCCCCceEEee---------------------------------------------------------------
Confidence 9999997653211 111
Q ss_pred ecCCCCCCCCeEEE--EEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCC--cCEEEEEEcCCCCEEEE
Q 005656 195 LRPCPENPTAVKAC--TISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN--GEVVGVACDSTNTLMIS 269 (685)
Q Consensus 195 ~~~~~~~~~~v~~~--~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s 269 (685)
.|...|.++ +++++| +++++|+.||+|++||++++.....+. +|. ..|.+++|+|+++.+++
T Consensus 306 -----~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~--------~~~~~~~v~~v~fsp~~~~l~s 372 (524)
T 2j04_B 306 -----VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV--------SRFRGSNLVPVVYCPQIYSYIY 372 (524)
T ss_dssp -----CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE--------EECSCCSCCCEEEETTTTEEEE
T ss_pred -----cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc--------cccccCcccceEeCCCcCeEEE
Confidence 677889999 578888 899999999999999999877665543 443 35889999999999999
Q ss_pred EECCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-----CCCCeEEEEE
Q 005656 270 AGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-----HTDRITDFCF 343 (685)
Q Consensus 270 ~s~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-----h~~~I~~l~~ 343 (685)
++.|++|++||++++.....+. +...|.+++|+|++++|++|+.|++|++||+..+ .+..+.. +...|..++|
T Consensus 373 ~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~ 451 (524)
T 2j04_B 373 SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDY 451 (524)
T ss_dssp ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBC
T ss_pred eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEecc
Confidence 9999999999999988765554 5589999999999999999999999999998754 2221111 1225789999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcC-CCceeeEEeec-cceEEEEEcCCCC---eEEEEEeCCCeEEEEEcCC
Q 005656 344 SEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVD-VSITALSLSPNMD---VLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 344 spdg~~l~s~s~Dg~I~iwd~~-~~~~i~~~~~~-~~v~~v~~spdg~---~Lat~~~d~~~I~lW~~~~ 408 (685)
+|+|+.+. ... .+++|+.. ++.++..+..+ ..|.+|+|+|++. +||+|+.+| .|+||..+.
T Consensus 452 sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g-~vrlw~l~~ 517 (524)
T 2j04_B 452 SIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG-LLTLEYLSL 517 (524)
T ss_dssp CSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTS-EEEEEECSC
T ss_pred CCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCc-eEEEEEccc
Confidence 99998552 322 34444433 46666666655 4599999999965 899998887 999998654
No 67
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=319.39 Aligned_cols=299 Identities=14% Similarity=0.232 Sum_probs=241.1
Q ss_pred CCeeeEEeecccccCeeEEEEeCCCc-EEEEecC---CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC---CCE
Q 005656 34 KRRLQSVIREAHDNAIISLHFFANEP-VLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRH 106 (685)
Q Consensus 34 ~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~ 106 (685)
..+.+..+..+|.+.|.+++|+|+++ ++++++. |+.|++|++..+. .......+|..+|.+++|+|+ +++
T Consensus 6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---LKLLREIEKAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---EEEEEEEEESSCEEEEECTTCCTTTCC
T ss_pred hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---ccceeeecccCcEEEEEEcCCCCCCce
Confidence 33444444448999999999999996 4556665 9999999998763 112223479999999999998 699
Q ss_pred EEEEeCCCceEEEEeecCc-eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEc
Q 005656 107 ILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 185 (685)
Q Consensus 107 l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 185 (685)
|++++.||.|++||+.+++ ....+.
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~~------------------------------------------------------ 108 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSVK------------------------------------------------------ 108 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEEC------------------------------------------------------
T ss_pred EEEecCCCeEEEEeCCCCCccEEEEE------------------------------------------------------
Confidence 9999999999999998765 333321
Q ss_pred CccccCceeecCCCCCCCCeEEEE------EccCCCEEEEEecCCcEEEEECCCCc-cccccccccccccCCCCcCEEEE
Q 005656 186 QNFVLGEHILRPCPENPTAVKACT------ISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGV 258 (685)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~~~------~s~~g~~l~~g~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~l 258 (685)
.+...|.+++ |+|+++++++|+.||.|++||+.++. ....+.. ....+...+.++
T Consensus 109 --------------~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~v~~~ 170 (357)
T 3i2n_A 109 --------------GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP----VQGENKRDCWTV 170 (357)
T ss_dssp --------------CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC----CTTSCCCCEEEE
T ss_pred --------------ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc----cCCCCCCceEEE
Confidence 5677888884 57899999999999999999999886 4444321 000123488999
Q ss_pred E----EcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEee---cCCEEEEEeCCCeEEEEEcCCCeeEEEE
Q 005656 259 A----CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR---VNGLLATVADDLVIRLFDVVALRMVRKF 331 (685)
Q Consensus 259 ~----~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 331 (685)
+ |+|+++++++++.||.|++||+++++......+...+.+++|+| ++.++++++.||.|++||+.+++.+..+
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence 8 78899999999999999999999999888888889999999999 8999999999999999999987665544
Q ss_pred e-----cCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC-------------------ceeeEEeecc-ceEEEEEc
Q 005656 332 E-----GHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILA-------------------RQIDAIHVDV-SITALSLS 385 (685)
Q Consensus 332 ~-----~h~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~-------------------~~i~~~~~~~-~v~~v~~s 385 (685)
. +|...|++++|+|+++ +|++++.||.|++||+.++ +.+..+..+. +|++++|+
T Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s 330 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS 330 (357)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence 4 8999999999999998 8999999999999999864 3455555444 59999999
Q ss_pred CCCCeEE-EEEeCCCeEEEEEcCC
Q 005656 386 PNMDVLA-TAHVDQNGVYLWVNRC 408 (685)
Q Consensus 386 pdg~~La-t~~~d~~~I~lW~~~~ 408 (685)
|+|++|+ +++.|+ .|++|+...
T Consensus 331 ~~~~~l~~s~~~d~-~i~iw~~~~ 353 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQ-TVRVLIVTK 353 (357)
T ss_dssp SSSTTEEEEEETTS-EEEEEEECC
T ss_pred CCCCeEEEEecCCC-cEEEEECCC
Confidence 9999999 688776 999998653
No 68
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=307.05 Aligned_cols=285 Identities=16% Similarity=0.224 Sum_probs=244.6
Q ss_pred CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
.+....+. +|.+.|++++| |++++|++++.||.|++||+... .....+..|...|.+++|+|++++|++++.||
T Consensus 8 ~~~~~~l~-~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 8 YQLSATLK-GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ----WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp CEEEEEEC-CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS----EEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred HHHHHHhh-CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC----EEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence 36677777 99999999999 99999999999999999999776 66777788999999999999999999999999
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
.|++|++.........
T Consensus 82 ~i~~~~~~~~~~~~~~---------------------------------------------------------------- 97 (313)
T 3odt_A 82 MINGVPLFATSGEDPL---------------------------------------------------------------- 97 (313)
T ss_dssp CEEEEETTCCTTSCC-----------------------------------------------------------------
T ss_pred eEEEEEeeecCCCCcc----------------------------------------------------------------
Confidence 9999998654321111
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECC
Q 005656 195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYH 273 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~d 273 (685)
.....+...+.++++ +++++++|+.+|.|++|| .+.....+. .|...+.++++.| ++.++++++.|
T Consensus 98 -~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 98 -YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ--------AHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp -CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE--------CCSSCEEEEEEEETTTTEEEEEETT
T ss_pred -cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc--------cCCCceeEEEEccCCCCEEEEEECC
Confidence 011156788999999 688999999999999999 444444433 7999999999988 88999999999
Q ss_pred CeEEEEECCCCceEEEee--cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 005656 274 GDIKVWDFKGRDLKSRWE--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL 351 (685)
Q Consensus 274 g~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~ 351 (685)
|.|++||. .+....+. +...+.+++|+|++. +++++.|+.|++||+.+++.+..+.+|.+.|++++|+|++ .|+
T Consensus 165 ~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~ 240 (313)
T 3odt_A 165 KTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV 240 (313)
T ss_dssp SCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE
T ss_pred CCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE
Confidence 99999993 44444444 568999999999998 9999999999999999999999999999999999999999 588
Q ss_pred EEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 352 SSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 352 s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
+++.||.|++||+.+++.+..+..+. +|++++|+|+++ +++++.|+ .|++|+.+.
T Consensus 241 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg-~i~iw~~~~ 296 (313)
T 3odt_A 241 SCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDN-LVRIFSQEK 296 (313)
T ss_dssp EEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTS-CEEEEESCG
T ss_pred EEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCC-cEEEEeCCC
Confidence 99999999999999999999998776 599999999998 55677786 999998643
No 69
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.4e-37 Score=309.39 Aligned_cols=248 Identities=14% Similarity=0.311 Sum_probs=216.7
Q ss_pred eeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce
Q 005656 37 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 116 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i 116 (685)
...++. +|.+.|++++|+|++++|++++.||+|++||+.++ ..+..+.+|..+|.+++|+|++++|++|+.|++|
T Consensus 5 ~~~~~~-~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 5 IKKTFS-NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ----VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CEEEEE-EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred eEEeec-CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC----ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 455676 99999999999999999999999999999999876 6778888999999999999999999999999999
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
++||+.+++....+
T Consensus 80 ~vwd~~~~~~~~~~------------------------------------------------------------------ 93 (304)
T 2ynn_A 80 RVFNYNTGEKVVDF------------------------------------------------------------------ 93 (304)
T ss_dssp EEEETTTCCEEEEE------------------------------------------------------------------
T ss_pred EEEECCCCcEEEEE------------------------------------------------------------------
Confidence 99998655432222
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656 197 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 276 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 276 (685)
.+|...|.+++|+|++.++++|+.||+|
T Consensus 94 ----------------------------------------------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v 121 (304)
T 2ynn_A 94 ----------------------------------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTV 121 (304)
T ss_dssp ----------------------------------------------------ECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred ----------------------------------------------------eCCCCcEEEEEEcCCCCEEEEECCCCeE
Confidence 1788999999999999999999999999
Q ss_pred EEEECCCC-ceEEEee-cCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCeeEEEEe-cCCCCeEEEEEcC--CCCEE
Q 005656 277 KVWDFKGR-DLKSRWE-VGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSE--DGKWL 350 (685)
Q Consensus 277 ~iwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp--dg~~l 350 (685)
++||+.++ .+...+. +...|.+++|+| ++.+|++|+.|++|++||+.++.....+. +|...|..++|+| ++++|
T Consensus 122 ~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (304)
T 2ynn_A 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (304)
T ss_dssp EEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEE
T ss_pred EEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEE
Confidence 99999877 4444554 447899999999 57899999999999999998877665554 5668899999987 77899
Q ss_pred EEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 351 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 351 ~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
++|+.|++|++||+.+++++..+..|.. |.+++|+|++.+|++++.|+ .|++|+.+.
T Consensus 202 ~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg-~i~iWd~~~ 259 (304)
T 2ynn_A 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG-TLKIWNSST 259 (304)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS-CEEEEETTT
T ss_pred EEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC-eEEEEECCC
Confidence 9999999999999999999999987655 99999999999999999997 999999653
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.1e-37 Score=321.95 Aligned_cols=290 Identities=14% Similarity=0.236 Sum_probs=244.8
Q ss_pred eEEeecccccCeeEEEEeCC----CcEEEEecCCCcEEEEEecCCCCCCceeEecc-----cCCCCCeEEEEecC----C
Q 005656 38 QSVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-----GHSAPPLCIRFYAN----G 104 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~-----~h~~~v~~i~~~~~----~ 104 (685)
...+..+|.++|++++|+|+ ...+++++.++.|++|++..+. .+..+. .|...|.+++|+|+ +
T Consensus 10 ~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 10 VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG----EIRLLQSYVDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp EEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG----CEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred EEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc----EEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence 33455589999999999984 4567777777899999998663 332222 36788999999999 6
Q ss_pred CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEE
Q 005656 105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 184 (685)
Q Consensus 105 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 184 (685)
++|++++.||.|++||+.+++....+.
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~----------------------------------------------------- 112 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYV----------------------------------------------------- 112 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEE-----------------------------------------------------
T ss_pred CEEEEecCCCEEEEEEchhceEeeeec-----------------------------------------------------
Confidence 799999999999999998776555442
Q ss_pred cCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC
Q 005656 185 LQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 263 (685)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 263 (685)
.+...|.+++|+| +++++++|+.||.|++||+.++.....+. ....|...|.+++|+|+
T Consensus 113 ---------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 113 ---------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG-----GVEGHRDEVLSADYDLL 172 (366)
T ss_dssp ---------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC-----STTSCSSCEEEEEECTT
T ss_pred ---------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec-----ccccccCceeEEEECCC
Confidence 5778999999999 99999999999999999999988776652 11279999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCceEEEee-----------------------------cCCceeEEEEeecCCEEEEEeCC
Q 005656 264 NTLMISAGYHGDIKVWDFKGRDLKSRWE-----------------------------VGCSLVKIVYHRVNGLLATVADD 314 (685)
Q Consensus 264 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------------------------~~~~i~~~~~~~~~~~l~~~~~d 314 (685)
+.++++++.||.|++||+.+++....+. +...|.+++|+ ++++++++.|
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 9999999999999999999876543332 55889999998 7899999999
Q ss_pred CeEEEEEcCCCe--------------eEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcee----eEEe
Q 005656 315 LVIRLFDVVALR--------------MVRKFEGHTDRITDFCFSED--GKWLLSSGMDGSLRIWDVILARQI----DAIH 374 (685)
Q Consensus 315 g~I~i~d~~~~~--------------~~~~~~~h~~~I~~l~~spd--g~~l~s~s~Dg~I~iwd~~~~~~i----~~~~ 374 (685)
+.|++||+.+++ .+..+.+|...|++++|+|+ +++|++|+.||.|++||+.+++.. ..+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 999999998764 48889999999999999999 999999999999999999988644 3565
Q ss_pred ec---cceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 375 VD---VSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 375 ~~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.+ ..|++++|+|++++|++++.|+ .|++|+..
T Consensus 331 ~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~ 365 (366)
T 3k26_A 331 HHKCGAAIRQTSFSRDSSILIAVCDDA-SIWRWDRL 365 (366)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTS-EEEEEEC-
T ss_pred ccccCCceEEEEeCCCCCeEEEEeCCC-EEEEEEec
Confidence 54 5699999999999999999997 99999853
No 71
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-38 Score=333.34 Aligned_cols=296 Identities=13% Similarity=0.182 Sum_probs=247.8
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC----CeeeEEeecccccCeeEEEEeCC-CcEEEEecCCCcEEEEEe
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK----RRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIF 75 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~----~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~ 75 (685)
|.+.|++++|+|+|+ +|++|+.||.|++||+.+ .+....+. +|.+.|.+++|+|+ +.+|++++.|+.|++||+
T Consensus 66 ~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred cCCceEEEEECCCCC-eEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 678999999999999 999999999999999988 45777776 89999999999998 889999999999999999
Q ss_pred cCCCC-----CCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccc
Q 005656 76 DTTDG-----DPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 149 (685)
Q Consensus 76 ~~~~~-----~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (685)
..... ....+....+|...|.+++|+|+ +.+|++++.||.|++||+.+++....+....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--------------- 208 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS--------------- 208 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC---------------
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc---------------
Confidence 87641 11122344689999999999999 7899999999999999998876655543100
Q ss_pred ccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCC---c
Q 005656 150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGG---W 225 (685)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg---~ 225 (685)
....+...+.+++|+|++ .++++++.+| .
T Consensus 209 -----------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 209 -----------------------------------------------PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp -----------------------------------------------CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred -----------------------------------------------cccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 001347889999999997 6899999998 9
Q ss_pred EEEEECCCCc-cccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEe
Q 005656 226 IERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYH 302 (685)
Q Consensus 226 i~~~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~ 302 (685)
|++||++++. ....+. .+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+.. ...+.+++|+
T Consensus 242 i~~~d~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s 314 (416)
T 2pm9_A 242 ILIWDLRNANTPLQTLN-------QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA 314 (416)
T ss_dssp CCEEETTSTTSCSBCCC-------SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC
T ss_pred EEEEeCCCCCCCcEEee-------cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC
Confidence 9999999863 333221 16899999999999 899999999999999999999998888875 4789999999
Q ss_pred ecC-CEEEEEeCCCeEEEEEcCCCeeEEEEe-----------------------------------cCCCCeEEEEEcCC
Q 005656 303 RVN-GLLATVADDLVIRLFDVVALRMVRKFE-----------------------------------GHTDRITDFCFSED 346 (685)
Q Consensus 303 ~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~-----------------------------------~h~~~I~~l~~spd 346 (685)
|++ .+|++++.|+.|++||+.++....... .|..++++++|+||
T Consensus 315 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 394 (416)
T 2pm9_A 315 PEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG 394 (416)
T ss_dssp TTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETT
T ss_pred CCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeC
Confidence 999 799999999999999998765322111 16678889999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 005656 347 GKWLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 347 g~~l~s~s~Dg~I~iwd~~~~ 367 (685)
|++|++++.||.|+||++.+.
T Consensus 395 g~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 395 GKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TEEECBCTTSSCBCCBCCCCC
T ss_pred CeEEEEeCCCCeEEEEEeccC
Confidence 999999999999999998764
No 72
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=316.83 Aligned_cols=246 Identities=17% Similarity=0.205 Sum_probs=210.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEe---ecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI---REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 77 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~---~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~ 77 (685)
|.++|++++|+|++ .|++|+.||.|+|||+.+++..... ..+|.+.|++++|+|++++|++|+.|++|++||+.+
T Consensus 81 ~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 81 TEAGVADLTWVGER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp ESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 35679999999996 4789999999999999988754332 238999999999999999999999999999999987
Q ss_pred CCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656 78 TDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 156 (685)
Q Consensus 78 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
+ +++..+.+|...|++++|+|++. .|++++.||+|++||+.+++....+...
T Consensus 159 ~----~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----------------------- 211 (344)
T 4gqb_B 159 Q----VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS----------------------- 211 (344)
T ss_dssp T----EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------------------------
T ss_pred C----cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-----------------------
Confidence 7 78888999999999999999874 7889999999999999888765544210
Q ss_pred eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCc
Q 005656 157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGI 235 (685)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~ 235 (685)
.+...+.+++|+|+ ++++++|+.||.|++||+++++
T Consensus 212 -------------------------------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 212 -------------------------------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248 (344)
T ss_dssp ---------------------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred -------------------------------------------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence 34556889999985 5788999999999999999998
Q ss_pred cccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCC-EEEEEeC
Q 005656 236 SRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVAD 313 (685)
Q Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 313 (685)
....+. +|...|++++|+|++ ++|++|+.||+|++||+.++++.....|...|.+++|+|++. +|++|+.
T Consensus 249 ~~~~~~--------~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 249 CVLSSA--------VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp CCEEEE--------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred EEEEEc--------CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcC
Confidence 887765 899999999999998 579999999999999999998887777779999999999986 6789999
Q ss_pred CCeEEEEEcCCCe
Q 005656 314 DLVIRLFDVVALR 326 (685)
Q Consensus 314 dg~I~i~d~~~~~ 326 (685)
|++|++|++.+..
T Consensus 321 D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 321 DHQVVHHVVPTEP 333 (344)
T ss_dssp TSCEEEEECCC--
T ss_pred CCeEEEEECCCCC
Confidence 9999999998754
No 73
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-36 Score=315.89 Aligned_cols=290 Identities=10% Similarity=0.076 Sum_probs=245.3
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
.|.++|++++|+|++++|++++.|+.|++|++..+. ...+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 689999999999999999999999999999998751 127777889999999999999999999999999999999977
Q ss_pred CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656 124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 203 (685)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 203 (685)
++...... ...+..
T Consensus 84 ~~~~~~~~------------------------------------------------------------------~~~~~~ 97 (372)
T 1k8k_C 84 RTWKPTLV------------------------------------------------------------------ILRINR 97 (372)
T ss_dssp TEEEEEEE------------------------------------------------------------------CCCCSS
T ss_pred CeeeeeEE------------------------------------------------------------------eecCCC
Confidence 65433221 015677
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC-
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK- 282 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~- 282 (685)
.+.+++|+|+++++++|+.+|.|++||+..+....... ....+|...|.+++|+|+++++++++.||.|++||+.
T Consensus 98 ~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (372)
T 1k8k_C 98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 173 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee----eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence 89999999999999999999999999998876321111 0123789999999999999999999999999999953
Q ss_pred -----------------CCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEc
Q 005656 283 -----------------GRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS 344 (685)
Q Consensus 283 -----------------~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s 344 (685)
.++.+..+. +...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|++++|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 253 (372)
T 1k8k_C 174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI 253 (372)
T ss_dssp TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE
T ss_pred ccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEe
Confidence 567777774 45789999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCC--Cce--e------------------------------------eEE--eeccceEEE
Q 005656 345 EDGKWLLSSGMDGSLRIWDVIL--ARQ--I------------------------------------DAI--HVDVSITAL 382 (685)
Q Consensus 345 pdg~~l~s~s~Dg~I~iwd~~~--~~~--i------------------------------------~~~--~~~~~v~~v 382 (685)
|++++|+++ .|+.|++|++.+ +.. + ..+ .+..+|+++
T Consensus 254 ~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 332 (372)
T 1k8k_C 254 TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI 332 (372)
T ss_dssp ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEE
T ss_pred cCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCccee
Confidence 999988887 899999999987 421 0 112 234459999
Q ss_pred EEc-CCC---CeEEEEEeCCCeEEEEEcC
Q 005656 383 SLS-PNM---DVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 383 ~~s-pdg---~~Lat~~~d~~~I~lW~~~ 407 (685)
+|+ ++| .+|++++.|+ .|++|+.+
T Consensus 333 ~~~~~~g~~~~~l~s~~~Dg-~i~~W~~~ 360 (372)
T 1k8k_C 333 SVLSGGKAKCSQFCTTGMDG-GMSIWDVR 360 (372)
T ss_dssp EEEESTTTSCSEEEEEETTS-EEEEEEHH
T ss_pred EEecCCCcceeeEEEecCCC-ceEEEEec
Confidence 966 677 9999999997 99999864
No 74
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=330.88 Aligned_cols=291 Identities=17% Similarity=0.343 Sum_probs=234.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-----------eeEEeecccc------------cCeeEEEEeCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----------LQSVIREAHD------------NAIISLHFFAN 57 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~-----------~~~~~~~~h~------------~~V~~l~~sp~ 57 (685)
|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++ ....+. +|. +.|++++|+|+
T Consensus 27 ~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 27 EADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp GGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCC
Confidence 357899999999999 99999999999999999876 577777 898 88999999999
Q ss_pred C--cEEEEecCCCcEEEEEecCCCCCC-----------------------------------c-eeEecccCCCCCeEEE
Q 005656 58 E--PVLMSASADNSIKMWIFDTTDGDP-----------------------------------R-LLRFRSGHSAPPLCIR 99 (685)
Q Consensus 58 ~--~~l~s~s~D~~v~iWd~~~~~~~~-----------------------------------~-~~~~~~~h~~~v~~i~ 99 (685)
+ ..|++++.|++|++|++....... . ......+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 799999999999999987632100 0 0122468999999999
Q ss_pred EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656 100 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 179 (685)
Q Consensus 100 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (685)
|+|++++|++| .||.|++||+......
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~---------------------------------------------------- 211 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRS---------------------------------------------------- 211 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEE----------------------------------------------------
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCce----------------------------------------------------
Confidence 99999999998 7999999998632211
Q ss_pred EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEE
Q 005656 180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 259 (685)
Q Consensus 180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 259 (685)
+.++++... ...+|...|.+++
T Consensus 212 ----------------------------------------------~~~~~~~~~------------~~~~~~~~v~~~~ 233 (447)
T 3dw8_B 212 ----------------------------------------------FNIVDIKPA------------NMEELTEVITAAE 233 (447)
T ss_dssp ----------------------------------------------EEEEECCCS------------SGGGCCCCEEEEE
T ss_pred ----------------------------------------------eeeeecccc------------cccccCcceEEEE
Confidence 111111110 1127888999999
Q ss_pred EcCCC-CEEEEEECCCeEEEEECCCCce----EEEeecCC-------------ceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656 260 CDSTN-TLMISAGYHGDIKVWDFKGRDL----KSRWEVGC-------------SLVKIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 260 ~~~~~-~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~-------------~i~~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
|+|++ .++++++.||.|++||+++++. ...+..+. .+.+++|+|++++|++++. +.|++||
T Consensus 234 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd 312 (447)
T 3dw8_B 234 FHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWD 312 (447)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEE
T ss_pred ECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEe
Confidence 99998 8999999999999999998876 56665543 8999999999999999999 9999999
Q ss_pred cCC-CeeEEEEecCCCC---------------eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE------------
Q 005656 322 VVA-LRMVRKFEGHTDR---------------ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI------------ 373 (685)
Q Consensus 322 ~~~-~~~~~~~~~h~~~---------------I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~------------ 373 (685)
+.+ ++++..+.+|... +..++|+|++++|++|+.||.|++||+.+++.+...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 392 (447)
T 3dw8_B 313 LNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVL 392 (447)
T ss_dssp TTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBC
T ss_pred CCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccccccc
Confidence 997 8888899988642 334999999999999999999999999998876422
Q ss_pred ---------------------eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 374 ---------------------HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 374 ---------------------~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.....|.+++|+|++.+||+++.+ .+++|..+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~--~~~~~~~~ 445 (447)
T 3dw8_B 393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN--NLYIFQDK 445 (447)
T ss_dssp CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS--CEEEEECC
T ss_pred CCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc--eeeeeccc
Confidence 123458899999999999999876 59999743
No 75
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-38 Score=330.82 Aligned_cols=292 Identities=12% Similarity=0.119 Sum_probs=227.5
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
|.++|++++|+|+|+ +||+|+.||.|+|||+.++ +....+. +|.+.|.+++|+|++++|++++.|++|++||+..+
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 468899999999999 9999999999999999998 7777887 89999999999999999999999999999999876
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce---eeEechhhHHHHHhhccccccccccCcee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ---SRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
. .......+.+|...|.+++|+|++++|++++.|+.|++||+.+++. ...+.
T Consensus 88 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------ 142 (377)
T 3dwl_C 88 G-TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK------------------------ 142 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC------------------------
T ss_pred C-ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee------------------------
Confidence 3 1235566778999999999999999999999999999999976652 22211
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 235 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~ 235 (685)
..|...|.+++|+|+++++++|+.||.|++||+..+.
T Consensus 143 -------------------------------------------~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 179 (377)
T 3dwl_C 143 -------------------------------------------RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRD 179 (377)
T ss_dssp -------------------------------------------SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSS
T ss_pred -------------------------------------------cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecc
Confidence 0267899999999999999999999999999996443
Q ss_pred cccccc----------cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce----EEEeecC-CceeEEE
Q 005656 236 SRGSYL----------DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL----KSRWEVG-CSLVKIV 300 (685)
Q Consensus 236 ~~~~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~-~~i~~~~ 300 (685)
...... ....... +|...|.+++|+|++++|++++.||.|++||+.+++. +..+..+ .++.+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 258 (377)
T 3dwl_C 180 VDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLL 258 (377)
T ss_dssp CC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEE
T ss_pred cCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEE
Confidence 211100 0011122 8999999999999999999999999999999998876 5555544 7899999
Q ss_pred EeecCCEEEEEeCCCeEEEEEcCCCe------------------------------eE------EEEe------------
Q 005656 301 YHRVNGLLATVADDLVIRLFDVVALR------------------------------MV------RKFE------------ 332 (685)
Q Consensus 301 ~~~~~~~l~~~~~dg~I~i~d~~~~~------------------------------~~------~~~~------------ 332 (685)
|+|++++|++|+.++.+ +|+..... .+ ..+.
T Consensus 259 ~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 337 (377)
T 3dwl_C 259 WANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSIS 337 (377)
T ss_dssp EEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------C
T ss_pred EcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccccccc
Confidence 99999999999877766 66654111 00 1111
Q ss_pred ----cCCCCeEEEEEcCCC-C---EEEEEeCCCcEEEEEc
Q 005656 333 ----GHTDRITDFCFSEDG-K---WLLSSGMDGSLRIWDV 364 (685)
Q Consensus 333 ----~h~~~I~~l~~spdg-~---~l~s~s~Dg~I~iwd~ 364 (685)
.|.+.|+++++.++. . .|+|||.||.|++||+
T Consensus 338 ~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 338 SLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 299999999976543 3 6999999999999985
No 76
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.7e-36 Score=305.41 Aligned_cols=284 Identities=16% Similarity=0.242 Sum_probs=242.0
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee-cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~ 83 (685)
.++|+||+++ +||+|. |++|+|||+.+++++..+. .+|...|++++|+|++++|++|+.||+|++|++.++ +
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~----~ 100 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----K 100 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT----E
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc----e
Confidence 4679999975 788875 8999999999999888775 367889999999999999999999999999999887 7
Q ss_pred eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
.+....+|...+.++.+ ++..+++++.++.+++|+..........
T Consensus 101 ~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~--------------------------------- 145 (318)
T 4ggc_A 101 RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT--------------------------------- 145 (318)
T ss_dssp EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE---------------------------------
T ss_pred eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE---------------------------------
Confidence 78888899988776555 5679999999999999987655332111
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
...+...+..+.++++++++++++.||.|++||+.+++.......
T Consensus 146 ----------------------------------~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 190 (318)
T 4ggc_A 146 ----------------------------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ- 190 (318)
T ss_dssp ----------------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE-
T ss_pred ----------------------------------EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee-
Confidence 016678899999999999999999999999999998765433221
Q ss_pred cccccCCCCcCEEEEEEcCCCCEE---EEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEe--CCCeEE
Q 005656 244 SERSNYAHNGEVVGVACDSTNTLM---ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIR 318 (685)
Q Consensus 244 ~~~~~~~h~~~v~~l~~~~~~~~l---~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~I~ 318 (685)
....|.+.|.++.++|.+..+ ++++.+++|++||...............+..+.|+|++..+++++ .|+.|+
T Consensus 191 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~ 267 (318)
T 4ggc_A 191 ---TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 267 (318)
T ss_dssp ---EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred ---eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEE
Confidence 223788899999999977533 355678999999999999988888889999999999999877655 799999
Q ss_pred EEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656 319 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 319 i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
+||+.+++++.++.+|.+.|++++|+|||++|+|||.||+|+|||+....
T Consensus 268 iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999997653
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-36 Score=350.36 Aligned_cols=319 Identities=17% Similarity=0.223 Sum_probs=271.9
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.++|++++|+|+|+ +||+|+.||.|++||+.+++.+..+. +|.+.|++++|+|++++|++++.||+|++|++..+.
T Consensus 54 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~- 130 (814)
T 3mkq_A 54 TETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW- 130 (814)
T ss_dssp CSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-
T ss_pred CCCcEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-
Confidence 788999999999999 99999999999999999999999998 999999999999999999999999999999998652
Q ss_pred CCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 159 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (685)
.....+.+|..+|.+++|+| ++..|++++.||.|++||+.++.....+..
T Consensus 131 --~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--------------------------- 181 (814)
T 3mkq_A 131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT--------------------------- 181 (814)
T ss_dssp --EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC---------------------------
T ss_pred --eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec---------------------------
Confidence 55667788999999999999 789999999999999999876654433321
Q ss_pred ccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc--CCCEEEEEecCCcEEEEECCCCccc
Q 005656 160 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
.+...+.+++|+| ++.++++|+.+|.|++||+.++...
T Consensus 182 ----------------------------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 182 ----------------------------------------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221 (814)
T ss_dssp ----------------------------------------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE
T ss_pred ----------------------------------------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence 3347789999999 9999999999999999999998877
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCC--EEEEEeCC
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG--LLATVADD 314 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~--~l~~~~~d 314 (685)
..+. +|...|.+++|+|++.++++++.||.|++||+.+++....+..+ ..+.+++|+|++. ++++++ +
T Consensus 222 ~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~ 292 (814)
T 3mkq_A 222 ATLE--------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-D 292 (814)
T ss_dssp EEEE--------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-T
T ss_pred EEEc--------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-C
Confidence 6664 79999999999999999999999999999999999988887765 7899999999987 455554 6
Q ss_pred CeEEEEEcCCCee----------EE---------------------------------EEecCCCCeEEEEEcCCCCEEE
Q 005656 315 LVIRLFDVVALRM----------VR---------------------------------KFEGHTDRITDFCFSEDGKWLL 351 (685)
Q Consensus 315 g~I~i~d~~~~~~----------~~---------------------------------~~~~h~~~I~~l~~spdg~~l~ 351 (685)
+.+.+|++..... +. .+..|...+.+++|+|+|++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la 372 (814)
T 3mkq_A 293 NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVT 372 (814)
T ss_dssp TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEE
T ss_pred CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEE
Confidence 6788888764322 11 1123455689999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 352 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 352 s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
+++ ||.+.+|++...... ....+.+++|+|+|+++++++.++ .|++|..
T Consensus 373 ~~~-~~~~~i~~~~~~~~~----~~~~i~~~~~spdg~~la~~~~~g-~v~l~~~ 421 (814)
T 3mkq_A 373 VVG-DGEYVIYTALAWRNK----AFGKCQDFVWGPDSNSYALIDETG-QIKYYKN 421 (814)
T ss_dssp EEE-TTEEEEEETTTTEEE----EEEECSEEEECTTSSCEEEECTTC-CEEEEET
T ss_pred Eec-CCEEEEEECcccccc----CCCceEEEEEeCCCCeEEEEeCCC-cEEEEEC
Confidence 998 899999998654332 234588999999999999999887 8999963
No 78
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2e-36 Score=314.15 Aligned_cols=296 Identities=13% Similarity=0.128 Sum_probs=228.3
Q ss_pred ccCeeEEEEeCCCcEEEEecCC-------CcEEEEEecCCCCCCc------eeEecccCCCCCeEEEEecCCCEEEEEe-
Q 005656 46 DNAIISLHFFANEPVLMSASAD-------NSIKMWIFDTTDGDPR------LLRFRSGHSAPPLCIRFYANGRHILSAG- 111 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~D-------~~v~iWd~~~~~~~~~------~~~~~~~h~~~v~~i~~~~~~~~l~s~s- 111 (685)
..||++++|+||+++|++||.| +.|++|+++....... ....+.+|...|.++++. ++.++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4589999999999999998754 3599999987643211 112467888899988775 44666654
Q ss_pred ----------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEE
Q 005656 112 ----------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181 (685)
Q Consensus 112 ----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (685)
.|+.+|+|++..........
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~-------------------------------------------------- 121 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFL-------------------------------------------------- 121 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEE--------------------------------------------------
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEe--------------------------------------------------
Confidence 46678888776543221110
Q ss_pred EEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCccccccccccccccCCCCcCEEEEE
Q 005656 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 259 (685)
Q Consensus 182 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 259 (685)
.. ............+++++|||||+++++++ .|+.|++||+.++.....+ .|.+.|.+++
T Consensus 122 --~~-------~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~---------~~~~~V~~v~ 183 (365)
T 4h5i_A 122 --TS-------VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI---------ETRGEVKDLH 183 (365)
T ss_dssp --EE-------ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE---------ECSSCCCEEE
T ss_pred --ee-------eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe---------CCCCceEEEE
Confidence 00 00001113455689999999999987655 6899999999999887665 6778899999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCceEEEe---ecCCceeEEEEeecCCEEEEEeCCC----eEEEEEcCCCee----E
Q 005656 260 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRW---EVGCSLVKIVYHRVNGLLATVADDL----VIRLFDVVALRM----V 328 (685)
Q Consensus 260 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg----~I~i~d~~~~~~----~ 328 (685)
|+|+|+++++++. +.+.+|+..++...... .+...+.+++|+|+++++++++.|+ .+++|++..... .
T Consensus 184 fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~ 262 (365)
T 4h5i_A 184 FSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS 262 (365)
T ss_dssp ECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE
T ss_pred EccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee
Confidence 9999999999885 55667776666654432 2346799999999999999998887 688999877643 4
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE-eec-cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 329 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HVD-VSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 329 ~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~-~~~-~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
..+.+|...|++++|||||++||+|+.|++|+|||+.+++++..+ ..| .+|++++|||||++||+++.|+ +|+||+.
T Consensus 263 ~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~-tvrvw~i 341 (365)
T 4h5i_A 263 KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN-TIHIIKL 341 (365)
T ss_dssp EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS-EEEEEEC
T ss_pred eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC-eEEEEEc
Confidence 567899999999999999999999999999999999999999886 444 4599999999999999999997 9999998
Q ss_pred CCCcCCC
Q 005656 407 RCMFSGD 413 (685)
Q Consensus 407 ~~~~~~~ 413 (685)
+..|...
T Consensus 342 p~~~~~~ 348 (365)
T 4h5i_A 342 PLNYANY 348 (365)
T ss_dssp CTTTTC-
T ss_pred CCCCcCc
Confidence 7666544
No 79
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-37 Score=330.17 Aligned_cols=286 Identities=16% Similarity=0.240 Sum_probs=236.4
Q ss_pred CCCcEEEEEEcc-CCCCEEEEEeCCCcEEEEeCCC---CeeeE-EeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656 1 MRGAVTALAFSS-DGQPLLASGASSGVISIWNLEK---RRLQS-VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 75 (685)
Q Consensus 1 h~~~V~~l~fsp-dg~~~latg~~dg~I~vwd~~~---~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~ 75 (685)
|+++|++++|+| +|+ +||+|+.||.|+|||+.+ +.... .+..+|.+.|++++|+|++++|++++.||+|++||+
T Consensus 62 h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 62 EPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKV 140 (437)
T ss_dssp TTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred CCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEe
Confidence 789999999999 998 999999999999999876 43221 222269999999999999999999999999999999
Q ss_pred cCC-CCCCceeEecc----------c--CCCCCeEEE--EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHh
Q 005656 76 DTT-DGDPRLLRFRS----------G--HSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 140 (685)
Q Consensus 76 ~~~-~~~~~~~~~~~----------~--h~~~v~~i~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 140 (685)
+.. .+ +...... . +...+.++. +++++.+|++++.||.|++||+.+++....+...
T Consensus 141 ~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------- 211 (437)
T 3gre_A 141 NHYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS------- 211 (437)
T ss_dssp EEEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC-------
T ss_pred ccccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC-------
Confidence 521 01 2222211 1 566777777 5578999999999999999999887766555310
Q ss_pred hccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 005656 141 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 220 (685)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 220 (685)
.+...|.+++|+|+++++++|
T Consensus 212 -----------------------------------------------------------~h~~~v~~~~~s~~~~~l~s~ 232 (437)
T 3gre_A 212 -----------------------------------------------------------PRHGAVSSICIDEECCVLILG 232 (437)
T ss_dssp -----------------------------------------------------------GGGCCEEEEEECTTSCEEEEE
T ss_pred -----------------------------------------------------------CCCCceEEEEECCCCCEEEEE
Confidence 156789999999999999999
Q ss_pred ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC----CCCEEEEEECCCeEEEEECCCCceEEEee-----
Q 005656 221 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS----TNTLMISAGYHGDIKVWDFKGRDLKSRWE----- 291 (685)
Q Consensus 221 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----- 291 (685)
+.||.|++||++++.....+.. .|...|.+++|+| ++.++++++.||.|++||+.+++....+.
T Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (437)
T 3gre_A 233 TTRGIIDIWDIRFNVLIRSWSF-------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ 305 (437)
T ss_dssp ETTSCEEEEETTTTEEEEEEBC-------TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC
T ss_pred cCCCeEEEEEcCCccEEEEEec-------CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC
Confidence 9999999999999887765531 6778999996654 57799999999999999999998777665
Q ss_pred ----------------------cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec----------------
Q 005656 292 ----------------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG---------------- 333 (685)
Q Consensus 292 ----------------------~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---------------- 333 (685)
+...|.+++|+ ++++|++|+.|+.|++||+.+++....+.+
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (437)
T 3gre_A 306 PSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTAN 384 (437)
T ss_dssp CCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETT
T ss_pred CccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecc
Confidence 33458899999 789999999999999999999887777765
Q ss_pred ---------------------CCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005656 334 ---------------------HTDRITDFCFSED--GKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 334 ---------------------h~~~I~~l~~spd--g~~l~s~s~Dg~I~iwd 363 (685)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 385 LTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 77999999999999995
No 80
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.7e-37 Score=326.88 Aligned_cols=290 Identities=15% Similarity=0.184 Sum_probs=232.6
Q ss_pred eEEeecccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCc
Q 005656 38 QSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRA 115 (685)
Q Consensus 38 ~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~ 115 (685)
..... +|...|+||+|+| ++.+||+|+.||+|+|||+..+.. .......+|.++|++++|+| ++++|++|+.||+
T Consensus 112 ~~~~~-~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~--~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAA-PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK--PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CCEEE-ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC--CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred cccCC-CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc--eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 34444 7899999999999 566999999999999999876532 34455679999999999998 6889999999999
Q ss_pred eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656 116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 195 (685)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 195 (685)
|++||+.++.......
T Consensus 189 v~iwd~~~~~~~~~~~---------------------------------------------------------------- 204 (435)
T 4e54_B 189 TRLQDFKGNILRVFAS---------------------------------------------------------------- 204 (435)
T ss_dssp EEEEETTSCEEEEEEC----------------------------------------------------------------
T ss_pred EEEeeccCCceeEEec----------------------------------------------------------------
Confidence 9999986543221111
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCC-EEEEEECCC
Q 005656 196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHG 274 (685)
Q Consensus 196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg 274 (685)
.......+.+++|+|+++++++|+.+|.|++||+.... ...+ .+|...|.+++|+|++. ++++++.|+
T Consensus 205 --~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~--------~~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 205 --SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNL--------RMHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp --CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCS--------BCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred --cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEE--------ecccceEEeeeecCCCceEEEEecCcc
Confidence 01334567889999999999999999999999987543 3333 28999999999999876 788999999
Q ss_pred eEEEEECCCCceEEE----eecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC------eEEEEEc
Q 005656 275 DIKVWDFKGRDLKSR----WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR------ITDFCFS 344 (685)
Q Consensus 275 ~i~iwd~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~------I~~l~~s 344 (685)
+|++||+++.+.... ..+...|.+++|+|++.+|++++.||.|++||+.+++....+.+|... +....|+
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 999999987654332 345588999999999999999999999999999999988888776532 3456788
Q ss_pred CCCCEEEEEe------------CCCcEEEEEcCCCceeeEEee-c-cceEEE-EEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 345 EDGKWLLSSG------------MDGSLRIWDVILARQIDAIHV-D-VSITAL-SLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 345 pdg~~l~s~s------------~Dg~I~iwd~~~~~~i~~~~~-~-~~v~~v-~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
|++.++++++ .++.|++||..+++.+..+.. + ..|.++ +|+|+|++|++|+ |+ .|+||+.+
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~-~i~iW~~~ 429 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GY-HILIWSQQ 429 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SS-EEEECCCC
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC-cEEEEECC
Confidence 8877777664 235799999999999888753 3 347777 6999999999876 65 89999854
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.8e-36 Score=319.87 Aligned_cols=293 Identities=19% Similarity=0.313 Sum_probs=238.9
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.++|+|++| +|+ ++++|+.||.|++||+.+++....+. +|.+.|.+++| ++++|++|+.||+|++||+.++
T Consensus 132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~-- 203 (435)
T 1p22_A 132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG-- 203 (435)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC--
T ss_pred CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC--
Confidence 4567999888 677 99999999999999999999999998 99999999999 7889999999999999999887
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+.+..+.+|...|.+++|++ ..+++|+.||.|++||+.++.......
T Consensus 204 --~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~----------------------------- 250 (435)
T 1p22_A 204 --EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRR----------------------------- 250 (435)
T ss_dssp --CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEE-----------------------------
T ss_pred --cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeee-----------------------------
Confidence 67788889999999999974 599999999999999997765432110
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
....+...|.++++ +++++++|+.||.|++||+.++.....+
T Consensus 251 ------------------------------------~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 292 (435)
T 1p22_A 251 ------------------------------------VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL 292 (435)
T ss_dssp ------------------------------------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ------------------------------------EecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE
Confidence 01166788999988 7899999999999999999999887776
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
. +|...|.++.++ +.++++|+.||.|++||+.+++.+..+..+ ..+.++++ ++.+|++|+.||.|++
T Consensus 293 ~--------~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~v 360 (435)
T 1p22_A 293 N--------GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV 360 (435)
T ss_dssp E--------CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred c--------CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEE
Confidence 4 899999999995 679999999999999999999998888754 78898888 7899999999999999
Q ss_pred EEcCCCe---------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcC
Q 005656 320 FDVVALR---------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSP 386 (685)
Q Consensus 320 ~d~~~~~---------~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~sp 386 (685)
||+.+++ ++..+.+|.+.|++++| ++++|++++.||+|++||+.++..........+..++.|.+
T Consensus 361 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 434 (435)
T 1p22_A 361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434 (435)
T ss_dssp EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred EECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeeec
Confidence 9998776 88999999999999999 78899999999999999999887766666566666666654
No 82
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.1e-35 Score=313.38 Aligned_cols=304 Identities=17% Similarity=0.251 Sum_probs=245.6
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
+....|+|+|+ +||+|+.||.|++||+.+++....+. +|.+.|++++|+|++++|++++.|++|++||+..+ +.
T Consensus 100 ~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----~~ 173 (420)
T 3vl1_A 100 TAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG----SN 173 (420)
T ss_dssp EEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CC
T ss_pred eEEEEEecCCC-EEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC----cC
Confidence 45557899998 99999999999999999999888876 89999999999999999999999999999999876 55
Q ss_pred eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 164 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (685)
+..+.+|...|.+++|+|++++|++++.||+|++||+.+++....+..... ...++..+
T Consensus 174 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--------------~~~~v~~~------- 232 (420)
T 3vl1_A 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN--------------PHDGVNSI------- 232 (420)
T ss_dssp CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTB--------------TTCCEEEE-------
T ss_pred ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCC--------------CCCCccEE-------
Confidence 667789999999999999999999999999999999998877766642110 00000000
Q ss_pred cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc
Q 005656 165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 244 (685)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~ 244 (685)
.|....... ....+...+.+++|+|+|+++++|+.+|.|++||+.++.....+..
T Consensus 233 -----------------~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 287 (420)
T 3vl1_A 233 -----------------ALFVGTDRQ------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-- 287 (420)
T ss_dssp -----------------EEEECCCSS------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC--
T ss_pred -----------------EEecCCcce------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc--
Confidence 000000000 0013456788899999999999999999999999999887666532
Q ss_pred ccccCCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCce-EEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656 245 ERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDL-KSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLF 320 (685)
Q Consensus 245 ~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~ 320 (685)
.|...|.+++|+|++. ++++++.||.|++||+++++. +..+.. ...+.++ +.+++++|++++.|+.|++|
T Consensus 288 -----~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 288 -----KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLD 361 (420)
T ss_dssp -----TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEE
T ss_pred -----ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEE
Confidence 6889999999999998 999999999999999998743 555543 3667666 55688899999999999999
Q ss_pred EcCCC---------eeEEEEecCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 005656 321 DVVAL---------RMVRKFEGHTDRITDFCFSEDGK---WLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 321 d~~~~---------~~~~~~~~h~~~I~~l~~spdg~---~l~s~s~Dg~I~iwd~~~ 366 (685)
|+... .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 362 IISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 98763 22334667899999999999999 788888899999999864
No 83
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-35 Score=306.31 Aligned_cols=311 Identities=15% Similarity=0.217 Sum_probs=231.0
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC----eeeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEE
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWI 74 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~----~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd 74 (685)
|+++|++++|+|+|+ +||+|+.||.|++||+.++ +....+. +|...|++++|+| ++++|++++.||+|++||
T Consensus 10 H~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 889999999999999 9999999999999999876 4666676 8999999999999 689999999999999999
Q ss_pred ecCCCCCC-----ceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccc
Q 005656 75 FDTTDGDP-----RLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 147 (685)
Q Consensus 75 ~~~~~~~~-----~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (685)
+..+.... +.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++....+.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------------ 155 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE------------ 155 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE------------
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc------------
Confidence 98764322 456777899999999999999 99999999999999999987765433211000
Q ss_pred ccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC---CCEEEEEecCC
Q 005656 148 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLGTAGG 224 (685)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg 224 (685)
..........+...+.+++|+|+ +.++++++.++
T Consensus 156 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 192 (351)
T 3f3f_A 156 -------------------------------------------MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ 192 (351)
T ss_dssp -------------------------------------------EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE
T ss_pred -------------------------------------------ccccccccCCcccceeEEEeccCCCCCcEEEEecCCC
Confidence 00000011256778999999997 99999999999
Q ss_pred cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC----CEEEEEECCCeEEEEECCCCceEEEeecC-CceeEE
Q 005656 225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN----TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKI 299 (685)
Q Consensus 225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~ 299 (685)
.+.+|+...+...... ...+|...|++++|+|++ ++|++++.||.|++||+..+......... ......
T Consensus 193 ~~~~~~~~~~~~~~~~------~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 266 (351)
T 3f3f_A 193 AIIYQRGKDGKLHVAA------KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMF 266 (351)
T ss_dssp EEEEEECTTSCEEEEE------ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------
T ss_pred cEEEEccCCCceeeee------ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceecc
Confidence 9988888777642211 223899999999999998 79999999999999999876443332221 223333
Q ss_pred EEeecCCEEEEE----eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656 300 VYHRVNGLLATV----ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 374 (685)
Q Consensus 300 ~~~~~~~~l~~~----~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~ 374 (685)
...+....++.+ .....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++.+++.+..+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp ------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred CCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 333333333333 334566777777788899999999999999999999999999999999999999887665543
No 84
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.5e-35 Score=305.09 Aligned_cols=277 Identities=10% Similarity=0.139 Sum_probs=237.9
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---eeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEe-
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIF- 75 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~- 75 (685)
|++.|++++|+|+|+ +|++|+.||.|++||+.++. ....+. +|...|.+++|+|+++ +|++++.||.|++|++
T Consensus 10 h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 789999999999998 99999999999999998876 334444 8999999999999999 9999999999999998
Q ss_pred cCCCCCCceeEeccc--CCCCCeEEEEecCCCEEEEEeCCCceEEEEeec---------CceeeEechhhHHHHHhhccc
Q 005656 76 DTTDGDPRLLRFRSG--HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ---------DQQSRELSQRHVAKRARKLKM 144 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~ 144 (685)
..+ . ...+.+ |...|.+++|+| +++|++++.||.|++||+.+ .+....+
T Consensus 88 ~~~----~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------------- 147 (342)
T 1yfq_A 88 GSP----S-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-------------- 147 (342)
T ss_dssp SSS----S-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--------------
T ss_pred cCC----c-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE--------------
Confidence 664 2 356678 999999999999 99999999999999999865 2211111
Q ss_pred cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 005656 145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 224 (685)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 224 (685)
.+...+.+++|++++ +++++.+|
T Consensus 148 -------------------------------------------------------~~~~~v~~~~~~~~~--l~~~~~d~ 170 (342)
T 1yfq_A 148 -------------------------------------------------------KVKNKIFTMDTNSSR--LIVGMNNS 170 (342)
T ss_dssp -------------------------------------------------------SSCCCEEEEEECSSE--EEEEESTT
T ss_pred -------------------------------------------------------eeCCceEEEEecCCc--EEEEeCCC
Confidence 356789999999987 99999999
Q ss_pred cEEEEECCC-CccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCC------ceEEEeecC---
Q 005656 225 WIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG--- 293 (685)
Q Consensus 225 ~i~~~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~--- 293 (685)
.|++||+.+ +...... ....|...|.+++|+| +++++++++.||.|++|++... +....+..+
T Consensus 171 ~i~i~d~~~~~~~~~~~------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T 1yfq_A 171 QVQWFRLPLCEDDNGTI------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp EEEEEESSCCTTCCCEE------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred eEEEEECCcccccccee------eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccc
Confidence 999999988 5432211 1227888999999999 9999999999999999999876 666666554
Q ss_pred -------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCc-EEEEEc
Q 005656 294 -------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGMDGS-LRIWDV 364 (685)
Q Consensus 294 -------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s~Dg~-I~iwd~ 364 (685)
..+.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|++++ |++++|++++.||+ .+.|..
T Consensus 245 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 28999999999999999999999999999999999999998 99999999 99999999999998 555553
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-35 Score=299.17 Aligned_cols=258 Identities=16% Similarity=0.260 Sum_probs=203.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC--CeeeEEeecccccCeeEEEEeCC--CcEEEEecCCCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK--RRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~ 76 (685)
|++.|++++|+|+|+ +||+|+.||.|+|||+.+ .+++..+. +|.++|.+++|+|+ +++|+|++.|++|++||+.
T Consensus 8 h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred CcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 889999999999999 999999999999999975 46677887 99999999999864 8899999999999999987
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
.+. ...+..+.+|...|.+++|+|+ +.+|++++.||+|++||+.++......
T Consensus 86 ~~~--~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~------------------------ 139 (297)
T 2pm7_B 86 NGR--WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI------------------------ 139 (297)
T ss_dssp SSC--BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE------------------------
T ss_pred CCc--eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee------------------------
Confidence 642 2344556789999999999997 889999999999999998654211000
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 234 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~ 234 (685)
....|...+.+++|+|++..- .+
T Consensus 140 ------------------------------------------~~~~h~~~v~~~~~~p~~~~~-----~~---------- 162 (297)
T 2pm7_B 140 ------------------------------------------IIDAHAIGVNSASWAPATIEE-----DG---------- 162 (297)
T ss_dssp ------------------------------------------EEECCSSCEEEEEECCCC--------------------
T ss_pred ------------------------------------------eeecccCccceEeecCCcccc-----cc----------
Confidence 000455667777777654210 00
Q ss_pred ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc----eEEEee-cCCceeEEEEeecC---C
Q 005656 235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD----LKSRWE-VGCSLVKIVYHRVN---G 306 (685)
Q Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~---~ 306 (685)
.+ ...+++++|++|+.|++|++||++++. ....+. +...|.+++|+|++ .
T Consensus 163 ---------------~~-------~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 163 ---------------EH-------NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (297)
T ss_dssp -----------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred ---------------cC-------CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence 00 011246789999999999999998765 444554 44789999999985 7
Q ss_pred EEEEEeCCCeEEEEEcCCCe---eEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 307 LLATVADDLVIRLFDVVALR---MVRKF--EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 307 ~l~~~~~dg~I~i~d~~~~~---~~~~~--~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
+|++++.|++|++||+.+.. ....+ .+|...|.+++|+|+|++|++++.||+|++|+..
T Consensus 221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999999999999998742 12233 4688899999999999999999999999999976
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-37 Score=319.73 Aligned_cols=287 Identities=11% Similarity=0.090 Sum_probs=224.7
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
.|.++|++++|+|++++|++++.|+.|++|++..+. .+.+..+.+|..+|.+++|+|++++|++++.||+|++||+.+
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 567899999999999999999999999999998641 245566789999999999999999999999999999999977
Q ss_pred CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656 124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 203 (685)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 203 (685)
+...... .....+..
T Consensus 87 ~~~~~~~-----------------------------------------------------------------~~~~~~~~ 101 (377)
T 3dwl_C 87 DGTWKQT-----------------------------------------------------------------LVLLRLNR 101 (377)
T ss_dssp --CCCCE-----------------------------------------------------------------EECCCCSS
T ss_pred CCceeee-----------------------------------------------------------------eEecccCC
Confidence 6510000 00115778
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCcc---ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGIS---RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 280 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 280 (685)
.|.+++|+|+++++++|+.||.|++||+.++.. ...+. ..|...|.+++|+|++++|++++.||.|++||
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-------RPLRSTILSLDWHPNNVLLAAGCADRKAYVLS 174 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC-------SSCCSCEEEEEECTTSSEEEEEESSSCEEEEE
T ss_pred ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee-------cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 899999999999999999999999999998863 33332 13999999999999999999999999999999
Q ss_pred CC------------------CCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee----EEEEecCCCCe
Q 005656 281 FK------------------GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM----VRKFEGHTDRI 338 (685)
Q Consensus 281 ~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~I 338 (685)
+. .+++...+.+...+.+++|+|++++|++++.|+.|++||+.+++. +..+.+|...|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v 254 (377)
T 3dwl_C 175 AYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPL 254 (377)
T ss_dssp ECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCE
T ss_pred EEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCce
Confidence 85 244555555568899999999999999999999999999999987 78899999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--e-------------------------e---------eEEe--------
Q 005656 339 TDFCFSEDGKWLLSSGMDGSLRIWDVILAR--Q-------------------------I---------DAIH-------- 374 (685)
Q Consensus 339 ~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~--~-------------------------i---------~~~~-------- 374 (685)
++++|+|+|++|++++.|+.+ +|+...+. . . ..+.
T Consensus 255 ~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 333 (377)
T 3dwl_C 255 RSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSS 333 (377)
T ss_dssp EEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----------------------
T ss_pred EEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccc
Confidence 999999999999999877655 66654211 0 0 0111
Q ss_pred ---------eccceEEEEEcCCCC----eEEEEEeCCCeEEEEEc
Q 005656 375 ---------VDVSITALSLSPNMD----VLATAHVDQNGVYLWVN 406 (685)
Q Consensus 375 ---------~~~~v~~v~~spdg~----~Lat~~~d~~~I~lW~~ 406 (685)
+...|+++++.+... .|++++.|| .|++|+.
T Consensus 334 ~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg-~i~iWdl 377 (377)
T 3dwl_C 334 QSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDG-RVVLWTL 377 (377)
T ss_dssp ---CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTS-EEEEECC
T ss_pred ccccccCccccceeEEEeccCCCCCceEEEEeecCCC-cEEEecC
Confidence 344599999766443 699999997 9999973
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.2e-35 Score=296.31 Aligned_cols=245 Identities=18% Similarity=0.244 Sum_probs=201.6
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEe
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSV 121 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~ 121 (685)
+|.+.|++++|+|+|++|++|+.|++|++|++.... .+.+..+.+|.++|.+++|+++ +++|++|+.||+|++||+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~--~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC--BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC--cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 899999999999999999999999999999987532 2566778899999999999863 889999999999999998
Q ss_pred ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC
Q 005656 122 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 201 (685)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 201 (685)
.++.....
T Consensus 85 ~~~~~~~~------------------------------------------------------------------------ 92 (297)
T 2pm7_B 85 ENGRWSQI------------------------------------------------------------------------ 92 (297)
T ss_dssp SSSCBCCC------------------------------------------------------------------------
T ss_pred CCCceEEE------------------------------------------------------------------------
Confidence 54321000
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEECCCeEEEE
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVW 279 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iw 279 (685)
. ....|...|.+++|+|+ +.+|++++.||+|++|
T Consensus 93 ------------------------------------~--------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~w 128 (297)
T 2pm7_B 93 ------------------------------------A--------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV 128 (297)
T ss_dssp ------------------------------------E--------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred ------------------------------------E--------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEE
Confidence 0 00168888999999987 7889999999999999
Q ss_pred ECCCCce--EEEe-ecCCceeEEEEeec-------------CCEEEEEeCCCeEEEEEcCCCe----eEEEEecCCCCeE
Q 005656 280 DFKGRDL--KSRW-EVGCSLVKIVYHRV-------------NGLLATVADDLVIRLFDVVALR----MVRKFEGHTDRIT 339 (685)
Q Consensus 280 d~~~~~~--~~~~-~~~~~i~~~~~~~~-------------~~~l~~~~~dg~I~i~d~~~~~----~~~~~~~h~~~I~ 339 (685)
|++++.. ...+ .+...+.+++|+|+ +++|++|+.|+.|++||+.+++ ....+.+|...|+
T Consensus 129 d~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (297)
T ss_dssp EBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred EecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence 9886531 2223 34578999999997 5799999999999999998765 6678899999999
Q ss_pred EEEEcCCC---CEEEEEeCCCcEEEEEcCCCce---eeEE---eeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 340 DFCFSEDG---KWLLSSGMDGSLRIWDVILARQ---IDAI---HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 340 ~l~~spdg---~~l~s~s~Dg~I~iwd~~~~~~---i~~~---~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
+++|+|++ ++|++++.|++|++||+.++.. ...+ .+...|.+++|+|+|++||+++.|+ .|++|+..
T Consensus 209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~-~v~lw~~~ 284 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN-KVTLWKEN 284 (297)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS-CEEEEEEC
T ss_pred EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC-cEEEEEEC
Confidence 99999985 8999999999999999987531 1222 2345599999999999999999997 99999854
No 88
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-36 Score=313.36 Aligned_cols=298 Identities=11% Similarity=0.075 Sum_probs=232.1
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 81 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~ 81 (685)
.+.|.+++|||||+ ++||++.|++|+ |...++ .+. +|...|.+++|+|+| .++.+.+|+.+..
T Consensus 15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~---~l~-gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~--- 77 (588)
T 2j04_A 15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK---DIN-CNSKNLFHVKEFPLE-------FENKLDFELAQQN--- 77 (588)
T ss_dssp SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS---CCS-SBGGGTEEEEEECCC-------CCCTTTTSCCCSS---
T ss_pred hccEEEEEECCCCC-EEEEEcCCceee--cccccc---eec-CCCccEEEEEECCCC-------CcceEEEEeCCCc---
Confidence 56899999999999 999999999999 755554 445 999999999999999 5666666643321
Q ss_pred CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
....+ +|...|.+++|+|+|++|++++.||.|++|+... ....+. .
T Consensus 78 --~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~---------------------------- 123 (588)
T 2j04_A 78 --GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-S---------------------------- 123 (588)
T ss_dssp --CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-C----------------------------
T ss_pred --eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-C----------------------------
Confidence 11222 5688999999999999999999999999999432 111110 0
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc-----
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS----- 236 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~----- 236 (685)
...-....+.+++|||+|+++++|+.||.|++||+.++..
T Consensus 124 -----------------------------------~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~ 168 (588)
T 2j04_A 124 -----------------------------------KGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF 168 (588)
T ss_dssp -----------------------------------SSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred -----------------------------------CCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccc
Confidence 0001134699999999999999999999999999998753
Q ss_pred --ccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce---EEEee--cCCceeEEEEeecCCEEE
Q 005656 237 --RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL---KSRWE--VGCSLVKIVYHRVNGLLA 309 (685)
Q Consensus 237 --~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~--~~~~i~~~~~~~~~~~l~ 309 (685)
...+.. ...+|...|.+++|+|+| +++++.|++|++||+.++.. ..++. +...|.+++|+ |+.||
T Consensus 169 i~l~ti~~----~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LA 240 (588)
T 2j04_A 169 YFESSIRL----SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVV 240 (588)
T ss_dssp EEEEEEEC----SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEE
T ss_pred eeeeeeec----ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEE
Confidence 222210 113788999999999999 88899999999999998774 34553 34789999999 68999
Q ss_pred EEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCC------C--------------
Q 005656 310 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDVIL------A-------------- 367 (685)
Q Consensus 310 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~--spdg~~l~s~s~Dg~I~iwd~~~------~-------------- 367 (685)
+++ ++.|++||+.+++......+|.+.|.+++| +||+..|++++.||+ ++|.... +
T Consensus 241 Sa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~ 318 (588)
T 2j04_A 241 LTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWS 318 (588)
T ss_dssp EEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTT
T ss_pred EEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEE
Confidence 987 699999999998875444489999999999 999999999999999 9998631 1
Q ss_pred ---ceeeEEeeccceEEEEEcCCCCeEEEEE
Q 005656 368 ---RQIDAIHVDVSITALSLSPNMDVLATAH 395 (685)
Q Consensus 368 ---~~i~~~~~~~~v~~v~~spdg~~Lat~~ 395 (685)
..+..+.....|.+++|||||+.+|+++
T Consensus 319 ~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 319 TIWNEFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp TTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred CCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence 1122222333499999999999999986
No 89
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.8e-34 Score=309.03 Aligned_cols=290 Identities=17% Similarity=0.268 Sum_probs=247.7
Q ss_pred eeEEeecccccCe-eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656 37 LQSVIREAHDNAI-ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 115 (685)
Q Consensus 37 ~~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~ 115 (685)
....+. +|.+.| .++.+ ++++|++|+.||+|++||+.++ +.+..+.+|..+|.+++|+|++ .+++|+.||+
T Consensus 113 ~~~~l~-~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 113 QRTTLR-GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp EEEEEE-CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred ceEEEc-CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC----cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence 445666 888875 56555 5679999999999999998877 7788888999999999999988 9999999999
Q ss_pred eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656 116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 195 (685)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 195 (685)
|++||+.+++....+.
T Consensus 185 i~vwd~~~~~~~~~~~---------------------------------------------------------------- 200 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFE---------------------------------------------------------------- 200 (464)
T ss_dssp EEEEETTTTEEEEEEC----------------------------------------------------------------
T ss_pred EEEEECCCCcEEEEEC----------------------------------------------------------------
Confidence 9999998876655442
Q ss_pred cCCCCCCCCeEEEEEc--cCCCEEEEEecCCcEEEEECCCCccccccccc---------------cccccCCCCcCEEEE
Q 005656 196 RPCPENPTAVKACTIS--ACGNFAVLGTAGGWIERFNLQSGISRGSYLDM---------------SERSNYAHNGEVVGV 258 (685)
Q Consensus 196 ~~~~~~~~~v~~~~~s--~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~---------------~~~~~~~h~~~v~~l 258 (685)
.+...|.+++++ ++++++++|+.||.|++||+.++......... ......+|...|.++
T Consensus 201 ----~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 276 (464)
T 3v7d_B 201 ----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276 (464)
T ss_dssp ----CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE
T ss_pred ----CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE
Confidence 577889999998 58899999999999999999987644321100 011234788888887
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC
Q 005656 259 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR 337 (685)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~ 337 (685)
++++.++++++.||.|++||+.+++.+..+.. ...+.+++|+|+++++++|+.||.|++||+.+++++..+.+|...
T Consensus 277 --~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 354 (464)
T 3v7d_B 277 --SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 354 (464)
T ss_dssp --EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred --cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc
Confidence 46788999999999999999999998888764 488999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
|++++|+ +++|++++.||.|++||+.++...........+..++|+|++.+|++++ |+ .|++|+.+.
T Consensus 355 v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg-~i~iwd~~~ 421 (464)
T 3v7d_B 355 VGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-EN-QFNIYNLRS 421 (464)
T ss_dssp EEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TT-EEEEEETTT
T ss_pred EEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CC-eEEEEECCC
Confidence 9999997 5899999999999999999998887777777789999999999999998 76 999999654
No 90
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.6e-35 Score=299.44 Aligned_cols=272 Identities=14% Similarity=0.173 Sum_probs=235.9
Q ss_pred cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEe
Q 005656 43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSV 121 (685)
Q Consensus 43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~ 121 (685)
.+|.+.|++++|+|++++|++++.|+.|++|++...... .......+|...|.+++|+|+++ +|++++.||.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc-ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 389999999999999999999999999999999876321 12344558999999999999999 9999999999999998
Q ss_pred -ecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656 122 -IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200 (685)
Q Consensus 122 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 200 (685)
.++.. ..+. .
T Consensus 87 ~~~~~~-~~~~--------------------------------------------------------------------~ 97 (342)
T 1yfq_A 87 IGSPSF-QALT--------------------------------------------------------------------N 97 (342)
T ss_dssp SSSSSE-EECB--------------------------------------------------------------------S
T ss_pred ccCCce-Eecc--------------------------------------------------------------------c
Confidence 66543 1111 4
Q ss_pred --CCCCeEEEEEccCCCEEEEEecCCcEEEEECCC---------CccccccccccccccCCCCcCEEEEEEcCCCCEEEE
Q 005656 201 --NPTAVKACTISACGNFAVLGTAGGWIERFNLQS---------GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 269 (685)
Q Consensus 201 --~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---------~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 269 (685)
+...|.+++|+| ++++++++.||.|++||+.+ +.....+ .|...|.+++|+|++ +++
T Consensus 98 ~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~--l~~ 165 (342)
T 1yfq_A 98 NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---------KVKNKIFTMDTNSSR--LIV 165 (342)
T ss_dssp CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS---------SSCCCEEEEEECSSE--EEE
T ss_pred cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE---------eeCCceEEEEecCCc--EEE
Confidence 778899999999 99999999999999999987 5544443 588999999999887 999
Q ss_pred EECCCeEEEEECCC-CceE---EEeecCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCC------eeEEEEecCCC--
Q 005656 270 AGYHGDIKVWDFKG-RDLK---SRWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVAL------RMVRKFEGHTD-- 336 (685)
Q Consensus 270 ~s~dg~i~iwd~~~-~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~-- 336 (685)
++.||.|++||+++ +... ....+...+.+++|+| +++++++++.||.|++|++... +....+.+|..
T Consensus 166 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
T 1yfq_A 166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245 (342)
T ss_dssp EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc
Confidence 99999999999998 5432 2334457899999999 9999999999999999999887 78888888865
Q ss_pred -------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCC
Q 005656 337 -------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 337 -------~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~ 398 (685)
.|++++|+|++++|++++.||.|++||+.+++.+..+..+ .+|++++ |+|++|++++.|+
T Consensus 246 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 9999999999999999999999999999999999988765 4599999 9999999999997
No 91
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=312.15 Aligned_cols=307 Identities=15% Similarity=0.199 Sum_probs=250.3
Q ss_pred CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCCCCCceeEe---------cccCC
Q 005656 23 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRF---------RSGHS 92 (685)
Q Consensus 23 ~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~---------~~~h~ 92 (685)
.++.+++|++..++....+. +|.+.|++++|+| ++++|++++.||.|++|++............ ..+|.
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVER-IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHHTEEECTTEEECC-CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred ccCcceeeccccCcceeeee-ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 34568889988888887887 8999999999999 9999999999999999999876433222110 13699
Q ss_pred CCCeEEEEec-CCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656 93 APPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 171 (685)
Q Consensus 93 ~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (685)
..|.+++|+| ++.+|++++.||.|++||+.+++....+
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------------------- 138 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF----------------------------------------- 138 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE-----------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec-----------------------------------------
Confidence 9999999999 7789999999999999999877655444
Q ss_pred EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccC---CCEEEEEecCCcEEEEECCCCcccccccccccccc
Q 005656 172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 248 (685)
Q Consensus 172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 248 (685)
.+...+.++++++. +.++++|+.+|.|++||+.++.....+.
T Consensus 139 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------- 183 (408)
T 4a11_B 139 ----------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ------- 183 (408)
T ss_dssp ----------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-------
T ss_pred ----------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-------
Confidence 23556788888884 4599999999999999999988776654
Q ss_pred CCCCcCEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc-eEEEe----------------ecCCceeEEEEeecCCEEEE
Q 005656 249 YAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRD-LKSRW----------------EVGCSLVKIVYHRVNGLLAT 310 (685)
Q Consensus 249 ~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~-~~~~~----------------~~~~~i~~~~~~~~~~~l~~ 310 (685)
.|...|.+++|+|++. .+++++.||.|++||++++. ....+ .+...+.+++|+|++++|++
T Consensus 184 -~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 262 (408)
T 4a11_B 184 -GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT 262 (408)
T ss_dssp -CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred -CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence 7999999999999998 58999999999999998764 33332 34478999999999999999
Q ss_pred EeCCCeEEEEEcCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEE
Q 005656 311 VADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSL 384 (685)
Q Consensus 311 ~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~ 384 (685)
++.||.|++||+.+++....+.++. ..+........+..+++++.|+.|++||+.+++.+..+..+. .|++++|
T Consensus 263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 342 (408)
T 4a11_B 263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF 342 (408)
T ss_dssp EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence 9999999999999987765544332 122222223345567777889999999999999999998654 5999999
Q ss_pred cCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 385 SPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 385 spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
+|++++|++++.|+ .|++|+...
T Consensus 343 s~~~~~l~s~~~dg-~i~iw~~~~ 365 (408)
T 4a11_B 343 QSNFQELYSGSRDC-NILAWVPSL 365 (408)
T ss_dssp ETTTTEEEEEETTS-CEEEEEECC
T ss_pred cCCCCEEEEECCCC-eEEEEeCCC
Confidence 99999999999997 999998654
No 92
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.2e-35 Score=302.89 Aligned_cols=282 Identities=17% Similarity=0.252 Sum_probs=231.9
Q ss_pred CCCcEEEEEEccC---CCCEEEEEeCCCcEEEEeCCC-Ceee-EEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe
Q 005656 1 MRGAVTALAFSSD---GQPLLASGASSGVISIWNLEK-RRLQ-SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 75 (685)
Q Consensus 1 h~~~V~~l~fspd---g~~~latg~~dg~I~vwd~~~-~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~ 75 (685)
|++.|++++|+|+ |+ +|++|+.||.|++||+.+ +... ..+. +|.+.|++++|+|++++|++++.||.|++||+
T Consensus 38 h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp CSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 7899999999999 57 999999999999999997 5555 5665 89999999999999999999999999999999
Q ss_pred cCCCCCCceeEecccCCCCCeEEEE--ecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 76 DTTDGDPRLLRFRSGHSAPPLCIRF--YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~h~~~v~~i~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
..+ ..+. ..+|..+|.+++| +|++++|++++.||.|++||+.+++....+.
T Consensus 116 ~~~----~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------------------- 168 (368)
T 3mmy_A 116 SSN----QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ---------------------- 168 (368)
T ss_dssp TTT----EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE----------------------
T ss_pred CCC----Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe----------------------
Confidence 876 4443 4679999999999 8899999999999999999998876555442
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 233 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~ 233 (685)
....+.++.+. +..+++++.++.+.+|++..
T Consensus 169 -----------------------------------------------~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 169 -----------------------------------------------LPERCYCADVI--YPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp -----------------------------------------------CSSCEEEEEEE--TTEEEEEEGGGCEEEEECSS
T ss_pred -----------------------------------------------cCCCceEEEec--CCeeEEEeCCCcEEEEEecc
Confidence 12234444444 56889999999999999987
Q ss_pred CccccccccccccccCCCCcCEEEEEEcCCCCE----EEEEECCCeEEEEECCCC---ceEEEeecCC------------
Q 005656 234 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTL----MISAGYHGDIKVWDFKGR---DLKSRWEVGC------------ 294 (685)
Q Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~----l~s~s~dg~i~iwd~~~~---~~~~~~~~~~------------ 294 (685)
........ ...+...+.++.+.++... +++++.||.|++||+... .....+..+.
T Consensus 200 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (368)
T 3mmy_A 200 QPSEFRRI------ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI 273 (368)
T ss_dssp SCEEEEEC------CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEE
T ss_pred ccchhhhc------cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccc
Confidence 65433321 1134445566666555443 999999999999999987 4455555543
Q ss_pred -ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 295 -SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 295 -~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
++.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|++++|+|+|++|++++.|+..+.|++..
T Consensus 274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 699999999999999999999999999999999999999999999999999999999999998666665443
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.5e-35 Score=298.81 Aligned_cols=263 Identities=14% Similarity=0.191 Sum_probs=204.4
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--eeEEeecccccCeeEEEEeC--CCcEEEEecCCCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~D~~v~iWd~~ 76 (685)
|+++|++++|+|+|+ +||+|+.|++|+|||+.++. .+..+. +|.+.|.+++|+| ++++|++++.|++|++||+.
T Consensus 12 H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~ 89 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89 (316)
T ss_dssp --CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred ccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence 889999999999999 99999999999999998875 456777 9999999999986 48899999999999999887
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
.+. ......+.+|...|.+++|+|+ +.+|++++.||+|++||+..+......
T Consensus 90 ~~~--~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~------------------------ 143 (316)
T 3bg1_A 90 NGT--WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK------------------------ 143 (316)
T ss_dssp SSC--CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC------------------------
T ss_pred CCc--ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee------------------------
Confidence 542 2345567799999999999998 789999999999999998754221100
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 234 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~ 234 (685)
.....|...+.+++|+|++.. +.+ .+...
T Consensus 144 -----------------------------------------~~~~~h~~~v~~~~~~~~~~~-------~~~--~~~~~- 172 (316)
T 3bg1_A 144 -----------------------------------------KINNAHTIGCNAVSWAPAVVP-------GSL--IDHPS- 172 (316)
T ss_dssp -----------------------------------------CBTTSSSSCBCCCEECCCCCC---------------CC-
T ss_pred -----------------------------------------eeeccccCCcceEEEccccCC-------ccc--ccccc-
Confidence 011145666777888876420 000 00000
Q ss_pred ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC---ceEEEeec-CCceeEEEEeecC----C
Q 005656 235 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR---DLKSRWEV-GCSLVKIVYHRVN----G 306 (685)
Q Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~-~~~i~~~~~~~~~----~ 306 (685)
++ ....+++|++|+.|++|++||+... +....+.. ...|.+++|+|++ .
T Consensus 173 ---------------~~--------~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 173 ---------------GQ--------KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp ---------------SC--------CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred ---------------cc--------CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 10 1123578999999999999999754 34445543 4789999999987 7
Q ss_pred EEEEEeCCCeEEEEEcCCC---e-eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 307 LLATVADDLVIRLFDVVAL---R-MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 307 ~l~~~~~dg~I~i~d~~~~---~-~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
+|++|+.|++|++||+.+. + ....+.+|...|.+++|+|+|++|++++.||+|++|+..
T Consensus 230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999999999863 1 233456789999999999999999999999999999976
No 94
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-36 Score=323.78 Aligned_cols=282 Identities=10% Similarity=0.095 Sum_probs=216.9
Q ss_pred CCCcEEEEEEccC------CCCEEEEEeCCCcEEEEeCCCCee-----------eEEeecccccCeeEEEEeCCCcEEEE
Q 005656 1 MRGAVTALAFSSD------GQPLLASGASSGVISIWNLEKRRL-----------QSVIREAHDNAIISLHFFANEPVLMS 63 (685)
Q Consensus 1 h~~~V~~l~fspd------g~~~latg~~dg~I~vwd~~~~~~-----------~~~~~~~h~~~V~~l~~sp~~~~l~s 63 (685)
|.+.|++++|+|+ +. +||+|+.||+|+|||+.++.. ...+. +|...|++++|++++ .|++
T Consensus 206 ~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~~-~las 282 (524)
T 2j04_B 206 SFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSPT-TVVC 282 (524)
T ss_dssp CCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSSS-EEEE
T ss_pred cCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCCC-eEEE
Confidence 5688999999997 45 999999999999999987642 23555 899999999999865 8999
Q ss_pred ecCCCcEEEEEecCCCCCCceeEecccCCCCCeEE--EEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHh
Q 005656 64 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI--RFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 140 (685)
Q Consensus 64 ~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i--~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 140 (685)
|+.||+|++||+..+. .....+.+|..+|+++ .|+|+| .+|+||+.||+|++||+++++....+..
T Consensus 283 gs~DgtV~lWD~~~~~---~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~-------- 351 (524)
T 2j04_B 283 GFKNGFVAEFDLTDPE---VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS-------- 351 (524)
T ss_dssp EETTSEEEEEETTBCS---SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE--------
T ss_pred EeCCCEEEEEECCCCC---CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc--------
Confidence 9999999999998652 3344567899999999 567887 8999999999999999987654333210
Q ss_pred hccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 005656 141 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 220 (685)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 220 (685)
+ .....+.+++|+|++..++++
T Consensus 352 ---------------------------------~-------------------------~~~~~v~~v~fsp~~~~l~s~ 373 (524)
T 2j04_B 352 ---------------------------------R-------------------------FRGSNLVPVVYCPQIYSYIYS 373 (524)
T ss_dssp ---------------------------------E-------------------------CSCCSCCCEEEETTTTEEEEE
T ss_pred ---------------------------------c-------------------------cccCcccceEeCCCcCeEEEe
Confidence 0 111347789999999999999
Q ss_pred ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee------cCC
Q 005656 221 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE------VGC 294 (685)
Q Consensus 221 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~ 294 (685)
+.|+.|++||++++.....+. +|.+.|++++|+|++++|++|+.||+|++||...+. ..... ...
T Consensus 374 ~~d~tv~lwd~~~~~~~~~l~--------gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~ 444 (524)
T 2j04_B 374 DGASSLRAVPSRAAFAVHPLV--------SRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSL 444 (524)
T ss_dssp CSSSEEEEEETTCTTCCEEEE--------ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST-TTCC------CCCC
T ss_pred CCCCcEEEEECcccccceeee--------cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh-ccccccCccceeee
Confidence 999999999999987766554 899999999999999999999999999999987542 22211 112
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcC-CCeeEEEEecCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 005656 295 SLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGHTDRITDFCFSEDGK---WLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~spdg~---~l~s~s~Dg~I~iwd~~~ 366 (685)
.+..++|+|+++.+. ... .+.+|+.. ++..+..+.+|...|++++|+|++. ++|+|+.||.|+||++.-
T Consensus 445 ~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 445 RLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 467899999998553 222 23344433 5677888999999999999999964 999999999999999864
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.5e-34 Score=299.95 Aligned_cols=278 Identities=17% Similarity=0.268 Sum_probs=232.5
Q ss_pred ccccC--eeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc-cCCCCCeEEEEecCCCEEEEEeCCCceEEEE
Q 005656 44 AHDNA--IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFS 120 (685)
Q Consensus 44 ~h~~~--V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd 120 (685)
+|... +.++.|++ ..+++++.|+.|++|++.++ +...... .|...|.+++|+|++++|++++.||.|++||
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSG----SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTC----CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCC----cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 45444 44466654 56788889999999999876 3333333 4899999999999999999999999999999
Q ss_pred eecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656 121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200 (685)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 200 (685)
+.+++....+. .
T Consensus 163 ~~~~~~~~~~~--------------------------------------------------------------------~ 174 (401)
T 4aez_A 163 VESQTKLRTMA--------------------------------------------------------------------G 174 (401)
T ss_dssp TTTCCEEEEEC--------------------------------------------------------------------C
T ss_pred CcCCeEEEEec--------------------------------------------------------------------C
Confidence 98776555442 5
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC-ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656 201 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 279 (685)
Q Consensus 201 ~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 279 (685)
+...|.+++| +++++++|+.+|.|++||+... .....+. +|.+.|.+++|+|++.++++++.||.|++|
T Consensus 175 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 175 HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ--------GHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244 (401)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc--------CCCCCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence 6788999999 5689999999999999999854 3343333 899999999999999999999999999999
Q ss_pred ECCCCceEEEee-cCCceeEEEEeecCC-EEEEEe--CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-
Q 005656 280 DFKGRDLKSRWE-VGCSLVKIVYHRVNG-LLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG- 354 (685)
Q Consensus 280 d~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s- 354 (685)
|+.+++....+. +...+.+++|+|++. ++++++ .|+.|++||+.+++.+..+. |...|++++|+|+++++++++
T Consensus 245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g 323 (401)
T 4aez_A 245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHG 323 (401)
T ss_dssp ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEEC
T ss_pred cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEee
Confidence 999998887775 458899999999775 666665 79999999999999999887 667899999999999999854
Q ss_pred -CCCcEEEEEcCCCceeeEE--ee-ccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 355 -MDGSLRIWDVILARQIDAI--HV-DVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 355 -~Dg~I~iwd~~~~~~i~~~--~~-~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.||.|++||+.++...... .. ...|++++|+|+|++|++++.|+ .|++|+..
T Consensus 324 ~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg-~i~iw~~~ 379 (401)
T 4aez_A 324 FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE-NLKFWRVY 379 (401)
T ss_dssp TTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS-EEEEEECC
T ss_pred cCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC-cEEEEECC
Confidence 8999999999997666554 33 34599999999999999999997 99999864
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.3e-34 Score=296.99 Aligned_cols=288 Identities=14% Similarity=0.153 Sum_probs=240.6
Q ss_pred EEEeCCCCeeeEEeecccccCeeEEEEeCC---CcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCC
Q 005656 28 SIWNLEKRRLQSVIREAHDNAIISLHFFAN---EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 104 (685)
Q Consensus 28 ~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 104 (685)
..|+....+.+..+. +|.+.|++++|+|+ |++|++++.||.|++|++..... .....+.+|..+|++++|+|++
T Consensus 22 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 22 TTDNHNPMKDIEVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--TIPKAQQMHTGPVLDVCWSDDG 98 (368)
T ss_dssp -CCSSCTTCCEECSS-CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--EEEEEEEECSSCEEEEEECTTS
T ss_pred ccCCCCCcceeEecc-CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--eeEEEeccccCCEEEEEECcCC
Confidence 345556666777776 99999999999999 59999999999999999986321 3336778899999999999999
Q ss_pred CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEE
Q 005656 105 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 184 (685)
Q Consensus 105 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 184 (685)
++|++++.||.|++||+.+++.....
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~~~------------------------------------------------------ 124 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQIA------------------------------------------------------ 124 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEE------------------------------------------------------
T ss_pred CEEEEEcCCCcEEEEEcCCCCceeec------------------------------------------------------
Confidence 99999999999999999877644322
Q ss_pred cCccccCceeecCCCCCCCCeEEEEE--ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC
Q 005656 185 LQNFVLGEHILRPCPENPTAVKACTI--SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 262 (685)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 262 (685)
.+...|.+++| +++++++++++.||.|++||+.++.....+. ....+.++.+.+
T Consensus 125 ---------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------~~~~~~~~~~~~ 180 (368)
T 3mmy_A 125 ---------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ---------LPERCYCADVIY 180 (368)
T ss_dssp ---------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE---------CSSCEEEEEEET
T ss_pred ---------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe---------cCCCceEEEecC
Confidence 46788999999 9999999999999999999999988776663 334666776664
Q ss_pred CCCEEEEEECCCeEEEEECCCCceEEEee---cCCceeEEEEeecCCE----EEEEeCCCeEEEEEcCCC---eeEEEEe
Q 005656 263 TNTLMISAGYHGDIKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGL----LATVADDLVIRLFDVVAL---RMVRKFE 332 (685)
Q Consensus 263 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~----l~~~~~dg~I~i~d~~~~---~~~~~~~ 332 (685)
..+++++.++.+++|++.......... ......++.+.++... +++++.|+.|++||+... +.+..+.
T Consensus 181 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 181 --PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp --TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred --CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 478889999999999998765433322 2356677777776654 999999999999999987 6677888
Q ss_pred cCCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCC
Q 005656 333 GHTD------------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 333 ~h~~------------~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~ 398 (685)
+|.. .|++++|+|++++|++++.||.|++||+.+++++..+..+. +|++++|+|+|++|++++.|+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 8876 79999999999999999999999999999999998887654 599999999999999999886
No 97
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-33 Score=300.80 Aligned_cols=272 Identities=18% Similarity=0.355 Sum_probs=244.2
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~ 80 (685)
|.++|++++|+ +. ++++|+.||.|++||+.+++.+..+. +|...|.+++|+ ++.+++++.||+|++||+..+
T Consensus 158 h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~-- 229 (445)
T 2ovr_B 158 HTGGVWSSQMR--DN-IIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG-- 229 (445)
T ss_dssp CSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC--
T ss_pred CCCCEEEEEec--CC-EEEEEeCCCeEEEEECCcCcEEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC--
Confidence 78899999998 45 89999999999999999999999998 999999999996 568999999999999999876
Q ss_pred CCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecc
Q 005656 81 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 160 (685)
Q Consensus 81 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (685)
+.+..+.+|..+|.++.| +++++++++.||.|++||+.+++....+.
T Consensus 230 --~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------- 276 (445)
T 2ovr_B 230 --QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ----------------------------- 276 (445)
T ss_dssp --CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-----------------------------
T ss_pred --cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-----------------------------
Confidence 677788899999999999 78899999999999999998776555442
Q ss_pred cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc
Q 005656 161 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 240 (685)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~ 240 (685)
.+...+.++++ +++++++|+.||.|++||+.++.....+
T Consensus 277 ---------------------------------------~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 315 (445)
T 2ovr_B 277 ---------------------------------------GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL 315 (445)
T ss_dssp ---------------------------------------CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ---------------------------------------CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 56778899998 8899999999999999999999887766
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee----cCCceeEEEEeecCCEEEEEeCCCe
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE----VGCSLVKIVYHRVNGLLATVADDLV 316 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~ 316 (685)
. +|...+.++.++ +.++++++.||.|++||+.+++....+. +...+.+++|+ ++++++|+.||.
T Consensus 316 ~--------~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 383 (445)
T 2ovr_B 316 T--------GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT 383 (445)
T ss_dssp C--------CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred c--------CCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCe
Confidence 4 888999998875 5699999999999999999999888886 44789999885 689999999999
Q ss_pred EEEEEcCCCeeEEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCCc----EEEEEcCC
Q 005656 317 IRLFDVVALRMVRKF-----EGHTDRITDFCFSEDGKWLLSSGMDGS----LRIWDVIL 366 (685)
Q Consensus 317 I~i~d~~~~~~~~~~-----~~h~~~I~~l~~spdg~~l~s~s~Dg~----I~iwd~~~ 366 (685)
|++||+.+++.+..+ .+|.+.|++++|+|++.++++|+.||+ |.|||+..
T Consensus 384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 999999999999988 478899999999999999999999998 99999875
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-35 Score=304.64 Aligned_cols=328 Identities=16% Similarity=0.160 Sum_probs=240.6
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCC--CCeeeEEeecccccCeeEEEEeCC--CcEEEEecCCCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLE--KRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~--~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~ 76 (685)
|+++|++++|+|+|+ +||+|+.||.|+|||+. +++....+. +|.+.|++++|+++ +++|++++.||.|++||+.
T Consensus 10 h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 87 (379)
T 3jrp_A 10 HNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 87 (379)
T ss_dssp CCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred CcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence 889999999999999 99999999999999998 566777777 89999999999987 8999999999999999998
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
.+. ...+....+|...|.+++|+|+ +.+|++++.||.|++||+..........
T Consensus 88 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----------------------- 142 (379)
T 3jrp_A 88 NGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII----------------------- 142 (379)
T ss_dssp TTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE-----------------------
T ss_pred CCc--eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE-----------------------
Confidence 762 1266777889999999999999 9999999999999999997664322110
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-------------CCCEEEEEe
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-------------CGNFAVLGT 221 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------~g~~l~~g~ 221 (685)
...+...+.+++|+| +++++++|+
T Consensus 143 -------------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (379)
T 3jrp_A 143 -------------------------------------------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 179 (379)
T ss_dssp -------------------------------------------EECCTTCEEEEEECCCC----------CTTCEEEEEE
T ss_pred -------------------------------------------ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe
Confidence 005678899999999 699999999
Q ss_pred cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC---CCEEEEEECCCeEEEEECCCCc---eEEEee---c
Q 005656 222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRD---LKSRWE---V 292 (685)
Q Consensus 222 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~---~~~~~~---~ 292 (685)
.||.|++||+.++........ ...+|...|.+++|+|+ +.++++++.||.|++||+.++. ...... +
T Consensus 180 ~dg~i~i~d~~~~~~~~~~~~----~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 255 (379)
T 3jrp_A 180 ADNLVKIWKYNSDAQTYVLES----TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 255 (379)
T ss_dssp TTSCEEEEEEETTTTEEEEEE----EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC
T ss_pred CCCeEEEEEecCCCcceeeEE----EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC
Confidence 999999999987754322211 22379999999999999 8999999999999999999864 222222 4
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe---c-----CCCCeEEEEEcCC--CC-EEEEEeCCCcEEE
Q 005656 293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---G-----HTDRITDFCFSED--GK-WLLSSGMDGSLRI 361 (685)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~---~-----h~~~I~~l~~spd--g~-~l~s~s~Dg~I~i 361 (685)
...+.+++|+|++++|++++.||.|++|++........+. . +...+....|... .. .++....+..+.+
T Consensus 256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 335 (379)
T 3jrp_A 256 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDN 335 (379)
T ss_dssp SSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEEEEEC----------------CEEEC--------------CT
T ss_pred CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccccccceeccccCCCCCCchheeecccccchhhhhcccccccchh
Confidence 5789999999999999999999999999998553332222 1 1122333333221 00 1111111111111
Q ss_pred EEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 362 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 362 wd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
+.. .....+...+.....|+|+|.+|+....+..+|+.+.+
T Consensus 336 ~~~----~~~~~~~~~~~~~~~fs~~g~~l~~~~~~~~~~~~~~~ 376 (379)
T 3jrp_A 336 AKL----IMKERRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKRL 376 (379)
T ss_dssp HHH----HHHHTTCCTTCCCEEEETTTEEEEECTTSSSSEEEEEC
T ss_pred HHh----hhhhccccCcceeeEECCCCeEeeecccccccEEEEec
Confidence 110 00111123446677899999999888777667888764
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.5e-33 Score=296.22 Aligned_cols=274 Identities=18% Similarity=0.275 Sum_probs=229.7
Q ss_pred CeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE--ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656 48 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR--FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125 (685)
Q Consensus 48 ~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~ 125 (685)
.++.|+|+++ ++|++|. |++|+|||..++ ++.. ...+|...|++++|+|+|++|++|+.||+|++||+.+++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg----~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSG----DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTC----CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCC----CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 4677999976 4777765 999999998876 4333 446788899999999999999999999999999998887
Q ss_pred eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656 126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 205 (685)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 205 (685)
....+. .|...+
T Consensus 181 ~~~~~~--------------------------------------------------------------------~h~~~v 192 (420)
T 4gga_A 181 RLRNMT--------------------------------------------------------------------SHSARV 192 (420)
T ss_dssp EEEEEC--------------------------------------------------------------------CCSSCE
T ss_pred EEEEEe--------------------------------------------------------------------CCCCce
Confidence 665543 566677
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 005656 206 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 285 (685)
Q Consensus 206 ~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (685)
.++++ ++..+++|+.++.+.+||.......... ..+|...+.++.++|++.++++++.||.+++|+..+++
T Consensus 193 ~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 193 GSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred EEEee--CCCEEEEEeCCCceeEeeecccceeeEE-------ecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 77665 5789999999999999999876544322 12899999999999999999999999999999998764
Q ss_pred e-----EEEeecCCceeEEEEeecCC-EEEEE--eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe--C
Q 005656 286 L-----KSRWEVGCSLVKIVYHRVNG-LLATV--ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG--M 355 (685)
Q Consensus 286 ~-----~~~~~~~~~i~~~~~~~~~~-~l~~~--~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s--~ 355 (685)
. .....+...|.+++|+|.+. +++++ +.|++|++||+.+++++..+..| ..+.++.|+|+++.+++++ .
T Consensus 264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~ 342 (420)
T 4gga_A 264 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFA 342 (420)
T ss_dssp SCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTT
T ss_pred ccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecC
Confidence 2 22334558899999999766 55554 57999999999999999998855 5689999999999998775 7
Q ss_pred CCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 356 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 356 Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
||.|+|||+.+++++..+..|.. |++++|+|||++|++++.|+ .|+||+.
T Consensus 343 d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~-tvriWdv 393 (420)
T 4gga_A 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE-TLRLWRC 393 (420)
T ss_dssp TCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT-EEEEECC
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC-eEEEEEC
Confidence 89999999999999999987655 99999999999999999997 9999974
No 100
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1e-34 Score=306.20 Aligned_cols=288 Identities=13% Similarity=0.170 Sum_probs=237.0
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe----eeEEeecccccCeeEEEEeC-CCcEEEEecCCCcEEEEEecCCC
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTD 79 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~D~~v~iWd~~~~~ 79 (685)
...++++|+...++++|+.||.|+||++.+.. ....+. +|.+.|++++|+| ++.+|++|+.||+|++|++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34578888876566678899999999996642 234455 8999999999999 99999999999999999998763
Q ss_pred CCC---ceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 80 GDP---RLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 80 ~~~---~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
... ..+..+.+|...|.+++|+|++ ++|++++.||.|++||+.+++....+..
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------- 172 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP----------------------- 172 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-----------------------
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-----------------------
Confidence 211 3456677999999999999998 6999999999999999988765554410
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 235 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~ 235 (685)
..+...|.+++|+|+|+++++|+.||.|++||++++.
T Consensus 173 -------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 173 -------------------------------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp -------------------------------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred -------------------------------------------CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 1567889999999999999999999999999999988
Q ss_pred cccccccccccccCCCCcC-EEEEEEcCCCCEEEEE---ECCCeEEEEECCCCce---EEEeecCCceeEEEEeecCCEE
Q 005656 236 SRGSYLDMSERSNYAHNGE-VVGVACDSTNTLMISA---GYHGDIKVWDFKGRDL---KSRWEVGCSLVKIVYHRVNGLL 308 (685)
Q Consensus 236 ~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~---s~dg~i~iwd~~~~~~---~~~~~~~~~i~~~~~~~~~~~l 308 (685)
....+. ..|.+. +.++.|+|+++++++| +.|+.|++||+.++.. ...+.+...+.+++|+|+++++
T Consensus 210 ~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 210 VVAEKD-------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp EEEEEE-------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred eeeeec-------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence 776652 167665 8999999999999998 7899999999997654 3334456889999999999988
Q ss_pred EE-EeCCCeEEEEEcCCCee-EEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656 309 AT-VADDLVIRLFDVVALRM-VRKFEG--HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 309 ~~-~~~dg~I~i~d~~~~~~-~~~~~~--h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
++ |+.|+.|++||+.+++. +..+.. |...|++++|+|++.++++ .++.+++|++.++.
T Consensus 283 ~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 283 YLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred EEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 65 55799999999998874 555544 5589999999999998775 56799999998764
No 101
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.3e-32 Score=293.11 Aligned_cols=319 Identities=13% Similarity=0.097 Sum_probs=261.1
Q ss_pred cEEEEE---EccCCCCEEEEE--------------eCCC--cEEEEeCCCC--eeeEEeecccccCeeEEEEeCCCcEEE
Q 005656 4 AVTALA---FSSDGQPLLASG--------------ASSG--VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLM 62 (685)
Q Consensus 4 ~V~~l~---fspdg~~~latg--------------~~dg--~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~ 62 (685)
.+..++ |+|++. .+++. +.++ .|..||..++ +.+..+. +...+.+++|+|++.+++
T Consensus 62 g~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 62 ALVEMAIPVYKDEKE-IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRLAI 138 (433)
T ss_dssp EEEEEEEECCCTTCC-EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEEEE
T ss_pred ccEEEEEeeccCCCc-EEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeEEE
Confidence 467778 888877 44322 2233 4555555445 5555554 345567999999888889
Q ss_pred EecCCCcEEEEEecCCCCCCceeE-----ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHH
Q 005656 63 SASADNSIKMWIFDTTDGDPRLLR-----FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAK 137 (685)
Q Consensus 63 s~s~D~~v~iWd~~~~~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 137 (685)
+++.|+.|++||+.++ +... ...+|...|.+++|+++++.+++++.|+.|++||+.+++....+.
T Consensus 139 ~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~------ 208 (433)
T 3bws_A 139 PLLEDEGMDVLDINSG----QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD------ 208 (433)
T ss_dssp EBTTSSSEEEEETTTC----CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE------
T ss_pred EeCCCCeEEEEECCCC----eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc------
Confidence 9999999999998876 3444 345889999999999999999999999999999998776554442
Q ss_pred HHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE
Q 005656 138 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 217 (685)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 217 (685)
.+...+.+++|+|+++++
T Consensus 209 --------------------------------------------------------------~~~~~~~~~~~~~~~~~l 226 (433)
T 3bws_A 209 --------------------------------------------------------------LTGKWSKILLYDPIRDLV 226 (433)
T ss_dssp --------------------------------------------------------------CSSSSEEEEEEETTTTEE
T ss_pred --------------------------------------------------------------CCCCCeeEEEEcCCCCEE
Confidence 446678999999999988
Q ss_pred EEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE--------CCCeEEEEECCCCceEE
Q 005656 218 VLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--------YHGDIKVWDFKGRDLKS 288 (685)
Q Consensus 218 ~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s--------~dg~i~iwd~~~~~~~~ 288 (685)
+++ +.+|.|++||+.++.....+ .+...+.+++|+|+++++++++ .||.|++||+.+++...
T Consensus 227 ~~~~~~~~~i~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~ 297 (433)
T 3bws_A 227 YCSNWISEDISVIDRKTKLEIRKT---------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID 297 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEC---------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE
T ss_pred EEEecCCCcEEEEECCCCcEEEEe---------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe
Confidence 554 47999999999998776655 3345699999999999999888 48899999999999888
Q ss_pred EeecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC------------
Q 005656 289 RWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM------------ 355 (685)
Q Consensus 289 ~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~------------ 355 (685)
.+.+...+.+++|+|+++ ++++++.|+.|++||+.+++.+..+. +...+.+++|+|+|++|++++.
T Consensus 298 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 298 TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 887777899999999997 45666889999999999999888886 7788999999999999988876
Q ss_pred ---CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 356 ---DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 356 ---Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
||.|++||+.+++.+..+..+..+.+++|+|+|++|++++.+++.|++|+..
T Consensus 377 g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 377 GLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred cccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 5799999999999999998887899999999999999988633499999864
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.4e-33 Score=281.32 Aligned_cols=274 Identities=17% Similarity=0.260 Sum_probs=226.6
Q ss_pred eeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE--ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce
Q 005656 49 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR--FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 126 (685)
Q Consensus 49 V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 126 (685)
.++|+||+++ +|++| .|++|+|||+.++ +++. ...+|...|++++|+|++++|++|+.||+|++|++.+++.
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg----~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSG----DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTC----CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCC----CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 5789999986 77765 5999999998876 4444 3457888999999999999999999999999999988876
Q ss_pred eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeE
Q 005656 127 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK 206 (685)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~ 206 (685)
...+. .|...+.
T Consensus 102 ~~~~~--------------------------------------------------------------------~h~~~~~ 113 (318)
T 4ggc_A 102 LRNMT--------------------------------------------------------------------SHSARVG 113 (318)
T ss_dssp EEEEE--------------------------------------------------------------------CCSSCEE
T ss_pred EEEec--------------------------------------------------------------------CccceEE
Confidence 65543 4444444
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 005656 207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL 286 (685)
Q Consensus 207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (685)
+ +++++..+++|+.++.+.+|+...+....... .+|...+..+.+.++++++++++.||.|++||+.+++.
T Consensus 114 ~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 114 S--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATL-------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp E--EEEETTEEEEEETTSEEEEEETTSSSCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred E--eecCCCEEEEEecCCceEeeecCCCceeEEEE-------cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 4 55567899999999999999998775543322 28999999999999999999999999999999987653
Q ss_pred E-----EEeecCCceeEEEEeecCC---EEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe--CC
Q 005656 287 K-----SRWEVGCSLVKIVYHRVNG---LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG--MD 356 (685)
Q Consensus 287 ~-----~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s--~D 356 (685)
. ....+...+..+.++|++. .+++++.++.|++||........... |...+..+.|+|+++.+++++ .|
T Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTT
T ss_pred cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCC
Confidence 2 2233457899999999876 33456778999999999888776655 777899999999999888765 79
Q ss_pred CcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 357 GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 357 g~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
+.|++||+.+++++..+..|.. |++++|+|+|++||+++.|+ .|+||+..
T Consensus 264 ~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~-~v~iWd~~ 314 (318)
T 4ggc_A 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE-TLRLWRCF 314 (318)
T ss_dssp CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT-EEEEECCS
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC-eEEEEECC
Confidence 9999999999999999987655 99999999999999999997 99999853
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.5e-34 Score=294.08 Aligned_cols=248 Identities=18% Similarity=0.241 Sum_probs=196.8
Q ss_pred eecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCceEE
Q 005656 41 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFRL 118 (685)
Q Consensus 41 ~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i~v 118 (685)
+..+|.+.|++++|+|+|++|++|+.|++|++||+..+. ...+..+.+|..+|.+++|++ ++++|++|+.|++|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 334899999999999999999999999999999997652 134667789999999999986 4889999999999999
Q ss_pred EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656 119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 198 (685)
Q Consensus 119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 198 (685)
||+.++......
T Consensus 86 Wd~~~~~~~~~~-------------------------------------------------------------------- 97 (316)
T 3bg1_A 86 WREENGTWEKSH-------------------------------------------------------------------- 97 (316)
T ss_dssp ECCSSSCCCEEE--------------------------------------------------------------------
T ss_pred EECCCCcceEEE--------------------------------------------------------------------
Confidence 998543210000
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC--CCEEEEEECCCeE
Q 005656 199 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDI 276 (685)
Q Consensus 199 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i 276 (685)
...+|...|.+++|+|+ +.+|++++.||+|
T Consensus 98 ------------------------------------------------~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i 129 (316)
T 3bg1_A 98 ------------------------------------------------EHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129 (316)
T ss_dssp ------------------------------------------------EECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred ------------------------------------------------EccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence 00178888999999987 7789999999999
Q ss_pred EEEECCCCceE---EEe-ecCCceeEEEEeec-----------------CCEEEEEeCCCeEEEEEcCCC---eeEEEEe
Q 005656 277 KVWDFKGRDLK---SRW-EVGCSLVKIVYHRV-----------------NGLLATVADDLVIRLFDVVAL---RMVRKFE 332 (685)
Q Consensus 277 ~iwd~~~~~~~---~~~-~~~~~i~~~~~~~~-----------------~~~l~~~~~dg~I~i~d~~~~---~~~~~~~ 332 (685)
++||+..+... ..+ .+...+.+++|+|+ +++|++|+.|+.|++||+... +.+..+.
T Consensus 130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~ 209 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209 (316)
T ss_dssp EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence 99998865321 222 23367888999987 468999999999999999765 5677889
Q ss_pred cCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcCCCc----eeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEE
Q 005656 333 GHTDRITDFCFSEDG----KWLLSSGMDGSLRIWDVILAR----QIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYL 403 (685)
Q Consensus 333 ~h~~~I~~l~~spdg----~~l~s~s~Dg~I~iwd~~~~~----~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~l 403 (685)
+|...|++++|+|++ ++|++++.||+|++|++.+.. ....+. +...|.+++|+|+|++||+++.|+ .|++
T Consensus 210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~-~v~l 288 (316)
T 3bg1_A 210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN-KVTL 288 (316)
T ss_dssp CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS-CEEE
T ss_pred cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC-eEEE
Confidence 999999999999986 899999999999999998631 122333 345699999999999999999997 9999
Q ss_pred EEcC
Q 005656 404 WVNR 407 (685)
Q Consensus 404 W~~~ 407 (685)
|+..
T Consensus 289 w~~~ 292 (316)
T 3bg1_A 289 WKES 292 (316)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9853
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.1e-33 Score=298.11 Aligned_cols=273 Identities=21% Similarity=0.354 Sum_probs=235.6
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
+|...|.++.| ++++|++|+.||+|++||+.++ +....+.+|..+|.+++| ++++|++|+.||+|++||+.+
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL----ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC----CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC----eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 56778998887 7899999999999999998876 677888899999999999 788999999999999999988
Q ss_pred CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656 124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 203 (685)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 203 (685)
++....+. .+..
T Consensus 203 ~~~~~~~~--------------------------------------------------------------------~h~~ 214 (435)
T 1p22_A 203 GEMLNTLI--------------------------------------------------------------------HHCE 214 (435)
T ss_dssp CCEEEEEC--------------------------------------------------------------------CCCS
T ss_pred CcEEEEEc--------------------------------------------------------------------CCCC
Confidence 77655442 5677
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 283 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (685)
.|.+++++ ++.+++|+.||.|++||+.++....... ...+|...|.++++ +++++++++.||.|++||+.+
T Consensus 215 ~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~ 285 (435)
T 1p22_A 215 AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRR-----VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST 285 (435)
T ss_dssp CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEE-----EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT
T ss_pred cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeee-----EecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc
Confidence 89999986 4699999999999999999876552111 22389999999999 678999999999999999999
Q ss_pred CceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656 284 RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 284 ~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw 362 (685)
++.+..+..+ ..+.++.+ +++++++|+.||.|++||+.+++++..+.+|...|++++| ++++|++|+.||.|++|
T Consensus 286 ~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vw 361 (435)
T 1p22_A 286 CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVW 361 (435)
T ss_dssp CCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred CcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEE
Confidence 9998888754 78888888 4789999999999999999999999999999999999999 78999999999999999
Q ss_pred EcCCCc---------eeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 363 DVILAR---------QIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 363 d~~~~~---------~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
|+.++. ++..+..+. .|++++| ++.+|++++.|+ .|++|+...
T Consensus 362 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg-~i~iwd~~~ 414 (435)
T 1p22_A 362 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD-TILIWDFLN 414 (435)
T ss_dssp EHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS-EEEEEC---
T ss_pred ECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCC-EEEEEECCC
Confidence 998776 677776554 4999999 789999999897 999998543
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.3e-33 Score=285.07 Aligned_cols=305 Identities=15% Similarity=0.110 Sum_probs=221.9
Q ss_pred cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec--CCCEEEEEeCCCceEEEE
Q 005656 43 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFRLFS 120 (685)
Q Consensus 43 ~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~dg~i~vwd 120 (685)
.+|.+.|++++|+|++++|++++.||.|++|++.......+....+.+|..+|++++|+| ++++|++++.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 399999999999999999999999999999999887666567778889999999999999 699999999999999999
Q ss_pred eecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656 121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200 (685)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 200 (685)
+.++....... ..........
T Consensus 88 ~~~~~~~~~~~-----------------------------------------------------------~~~~~~~~~~ 108 (351)
T 3f3f_A 88 EDPDQEECSGR-----------------------------------------------------------RWNKLCTLND 108 (351)
T ss_dssp ECTTSCTTSSC-----------------------------------------------------------SEEEEEEECC
T ss_pred cCCCccccccc-----------------------------------------------------------Ccceeeeecc
Confidence 98764211000 0000001115
Q ss_pred CCCCeEEEEEccC--CCEEEEEecCCcEEEEECCCCcccccccccc-----ccccCCCCcCEEEEEEcCC---CCEEEEE
Q 005656 201 NPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISRGSYLDMS-----ERSNYAHNGEVVGVACDST---NTLMISA 270 (685)
Q Consensus 201 ~~~~v~~~~~s~~--g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~-----~~~~~~h~~~v~~l~~~~~---~~~l~s~ 270 (685)
+...+.+++|+|+ ++++++++.||.|++||+.++.....+.... ......|...+.+++|+|+ +..++++
T Consensus 109 ~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 188 (351)
T 3f3f_A 109 SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 188 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence 6788999999999 9999999999999999999887665542110 1112368889999999997 8999999
Q ss_pred ECCCeEEEEECCCCce--EEEee-cCCceeEEEEeecC----CEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEE
Q 005656 271 GYHGDIKVWDFKGRDL--KSRWE-VGCSLVKIVYHRVN----GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF 343 (685)
Q Consensus 271 s~dg~i~iwd~~~~~~--~~~~~-~~~~i~~~~~~~~~----~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~ 343 (685)
+.|+.+.+|+...+.. ...+. +...|.+++|+|++ ++|++|+.||.|++||+.++........+...+....+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 268 (351)
T 3f3f_A 189 ALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDN 268 (351)
T ss_dssp ETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------
T ss_pred cCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCC
Confidence 9999999998887765 44443 34889999999998 89999999999999999987665555545555555555
Q ss_pred cCCCCEEEEEe----CCCcEEEEEcCCCceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 344 SEDGKWLLSSG----MDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 344 spdg~~l~s~s----~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
++....++.+. ....+.+|+....+.+..+..|. .|++++|+|++++|++++.|+ .|++|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-~v~iw~~~ 336 (351)
T 3f3f_A 269 SADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDG-KVRLWKAT 336 (351)
T ss_dssp ----------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTS-CEEEEEEC
T ss_pred CcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCC-cEEEEecC
Confidence 55555554443 34556777777777888887654 499999999999999999997 99999864
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-33 Score=288.73 Aligned_cols=260 Identities=16% Similarity=0.222 Sum_probs=215.0
Q ss_pred eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCC
Q 005656 36 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQD 113 (685)
Q Consensus 36 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~d 113 (685)
+++..+. +|.+.|++++|+|++++|++++.||.|++|++.... .+.+..+.+|..+|++++|+++ +++|++++.|
T Consensus 2 ~~~~~~~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 2 SMVVIAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp ---CCEE-ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CccEEec-CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 4556666 999999999999999999999999999999997432 2667778899999999999977 8999999999
Q ss_pred CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656 114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 193 (685)
Q Consensus 114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 193 (685)
|.|++||+.+++......
T Consensus 79 g~v~iwd~~~~~~~~~~~-------------------------------------------------------------- 96 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAV-------------------------------------------------------------- 96 (379)
T ss_dssp SCEEEEEEETTEEEEEEE--------------------------------------------------------------
T ss_pred CEEEEEEcCCCceeEeee--------------------------------------------------------------
Confidence 999999998775211110
Q ss_pred eecCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC---------
Q 005656 194 ILRPCPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--------- 262 (685)
Q Consensus 194 ~~~~~~~~~~~v~~~~~s~~--g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------- 262 (685)
...+...+.+++|+|+ ++++++++.||.|++||+.++...... ....|...|.+++|+|
T Consensus 97 ----~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 97 ----HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp ----ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEECCTTCEEEEEECCCC-------
T ss_pred ----ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------EecCCCCceEEEEEcCccccccccc
Confidence 0156788999999999 999999999999999999987543322 1238999999999999
Q ss_pred ----CCCEEEEEECCCeEEEEECCCCc----eEEEee-cCCceeEEEEeec---CCEEEEEeCCCeEEEEEcCCCe---e
Q 005656 263 ----TNTLMISAGYHGDIKVWDFKGRD----LKSRWE-VGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALR---M 327 (685)
Q Consensus 263 ----~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~---~ 327 (685)
++.++++++.||.|++||++++. ....+. +...|.+++|+|+ +++|++++.||.|++||+.++. .
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 246 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccce
Confidence 68999999999999999998764 233343 3588999999999 8999999999999999999863 2
Q ss_pred EEE--EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 328 VRK--FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 328 ~~~--~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
... ...|...|++++|+|+|++|++++.||.|++|++..+...
T Consensus 247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 222 2348889999999999999999999999999999865443
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-33 Score=296.23 Aligned_cols=285 Identities=14% Similarity=0.178 Sum_probs=231.5
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---eeEEeec-----------------------------------
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIRE----------------------------------- 43 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~---~~~~~~~----------------------------------- 43 (685)
..+|++++|+|||+ +|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 46899999999999 77666 47899999999888 5555441
Q ss_pred ------------------ccccCeeEEEEeCCCcEE-EEecCCCcEEEEEec--CCCCCCceeEecc--cCCCCCeEEEE
Q 005656 44 ------------------AHDNAIISLHFFANEPVL-MSASADNSIKMWIFD--TTDGDPRLLRFRS--GHSAPPLCIRF 100 (685)
Q Consensus 44 ------------------~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~--~~~~~~~~~~~~~--~h~~~v~~i~~ 100 (685)
+|.+.|++++|+|++++| ++++.||+|++|++. .+ ..+..+. .|...|.+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK----NVLKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS----SCEEEEEEEECSSCEEEEEE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC----ceeeeeecccCCCCceEEEE
Confidence 234479999999999986 899999999999998 44 3444443 67789999999
Q ss_pred ecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceE
Q 005656 101 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 180 (685)
Q Consensus 101 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (685)
+|++++|++++.||.+++|++.++......
T Consensus 158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~-------------------------------------------------- 187 (450)
T 2vdu_B 158 AEDDTTVIIADKFGDVYSIDINSIPEEKFT-------------------------------------------------- 187 (450)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSCCCSSCC--------------------------------------------------
T ss_pred cCCCCEEEEEeCCCcEEEEecCCccccccc--------------------------------------------------
Confidence 999999999999999999998765432100
Q ss_pred EEEEcCccccCceeecCCCCCCCCeEEEEEccC---CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEE
Q 005656 181 YVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG 257 (685)
Q Consensus 181 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 257 (685)
......+...|.+++|+|+ ++++++|+.|+.|++||+.++.....+. .+|...|.+
T Consensus 188 --------------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------~~h~~~v~~ 246 (450)
T 2vdu_B 188 --------------QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL-------FGHKHFVSS 246 (450)
T ss_dssp --------------CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC-------CCCSSCEEE
T ss_pred --------------ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee-------cCCCCceEE
Confidence 0011156788999999999 9999999999999999999887766532 289999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec--------------------------CCceeEEEEeecCCEEEEE
Q 005656 258 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--------------------------GCSLVKIVYHRVNGLLATV 311 (685)
Q Consensus 258 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------------------~~~i~~~~~~~~~~~l~~~ 311 (685)
++|+ ++++|++++.|+.|++||+.+++.+..+.. ...+..++|+|++++++++
T Consensus 247 ~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 325 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF 325 (450)
T ss_dssp EEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred EEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence 9999 999999999999999999999998877753 2468899999999999999
Q ss_pred e-CCCeEEEEEc--CCC---eeEEEEecCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcC
Q 005656 312 A-DDLVIRLFDV--VAL---RMVRKFEGHTDRITDFCFSEDGKWLLSSGM------DGSLRIWDVI 365 (685)
Q Consensus 312 ~-~dg~I~i~d~--~~~---~~~~~~~~h~~~I~~l~~spdg~~l~s~s~------Dg~I~iwd~~ 365 (685)
+ .|+.|++|++ .++ +.+..+.+| +.|.+++|+|++.++++++. +..|.+|.+.
T Consensus 326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 326 VEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred ECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 9 8999999999 666 778888888 88999999996544433333 4457888764
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.2e-31 Score=279.57 Aligned_cols=277 Identities=10% Similarity=0.094 Sum_probs=234.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecccCCCC
Q 005656 16 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 94 (685)
Q Consensus 16 ~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~ 94 (685)
.++++++.|+.|++||+.+++....+. .| ..+.+++|+|+++++ ++++.|++|++||+.++ +.+..+..+. .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~----~~~~~~~~~~-~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIP-VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----NVIATVPAGS-S 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT----EEEEEEECSS-S
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEee-cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC----eEEEEEECCC-C
Confidence 378899999999999999999998887 55 458999999999976 67778999999998776 5666655444 8
Q ss_pred CeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE
Q 005656 95 PLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 173 (685)
Q Consensus 95 v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (685)
+.+++|+|++++|+.++ .++.|++||+.+++....+.
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~------------------------------------------ 113 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK------------------------------------------ 113 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------------------------------------------
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe------------------------------------------
Confidence 99999999999886555 67999999998776544431
Q ss_pred EcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCC
Q 005656 174 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 252 (685)
Q Consensus 174 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~ 252 (685)
....+.+++|+|+|+++ ++++.++.|++||+.+++....+. +.
T Consensus 114 ---------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------~~ 157 (391)
T 1l0q_A 114 ---------------------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---------VG 157 (391)
T ss_dssp ---------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------CC
T ss_pred ---------------------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe---------cC
Confidence 23457899999999988 677889999999999988776652 33
Q ss_pred cCEEEEEEcCCCCEE-EEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEe---CCCeEEEEEcCCCeeE
Q 005656 253 GEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA---DDLVIRLFDVVALRMV 328 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~I~i~d~~~~~~~ 328 (685)
..+.+++|+|+++.+ ++++.++.|++||+.+++....+..+..+.+++|+|+++++++++ .++.|++||+.+++.+
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 567999999999887 566788999999999999998888888999999999999988888 6899999999999999
Q ss_pred EEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCceeeEEeeccc
Q 005656 329 RKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVILARQIDAIHVDVS 378 (685)
Q Consensus 329 ~~~~~h~~~I~~l~~spdg~~l-~s~s~Dg~I~iwd~~~~~~i~~~~~~~~ 378 (685)
..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+..
T Consensus 238 ~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 238 ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 9998765 57899999999987 5678899999999999999888875543
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.8e-33 Score=295.22 Aligned_cols=290 Identities=13% Similarity=0.111 Sum_probs=233.1
Q ss_pred CeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec-CCCEEEEEeCCCceEEEEeecCc
Q 005656 48 AIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQ 125 (685)
Q Consensus 48 ~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~dg~i~vwd~~~~~ 125 (685)
....++++|+...+ ++++.||.|++|+++........+..+.+|..+|++++|+| ++++|++|+.||+|++|++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 44568899887644 45788999999998665333344556779999999999999 89999999999999999998764
Q ss_pred eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656 126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 205 (685)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 205 (685)
....... .......|...|
T Consensus 116 ~~~~~~~-------------------------------------------------------------~~~~~~~h~~~v 134 (402)
T 2aq5_A 116 LVLPLRE-------------------------------------------------------------PVITLEGHTKRV 134 (402)
T ss_dssp CSSCBCS-------------------------------------------------------------CSEEEECCSSCE
T ss_pred CccccCC-------------------------------------------------------------ceEEecCCCCeE
Confidence 3211100 000011678899
Q ss_pred EEEEEccCC-CEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005656 206 KACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 284 (685)
Q Consensus 206 ~~~~~s~~g-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (685)
.+++|+|++ +++++|+.||.|++||+.++.....+. ...|...|.+++|+|++.+|++++.||.|++||++++
T Consensus 135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 208 (402)
T 2aq5_A 135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208 (402)
T ss_dssp EEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred EEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence 999999998 799999999999999999998776651 0279999999999999999999999999999999999
Q ss_pred ceEEEe-ecC-C-ceeEEEEeecCCEEEEE---eCCCeEEEEEcCCCee-EEEEe-cCCCCeEEEEEcCCCCEEEE-EeC
Q 005656 285 DLKSRW-EVG-C-SLVKIVYHRVNGLLATV---ADDLVIRLFDVVALRM-VRKFE-GHTDRITDFCFSEDGKWLLS-SGM 355 (685)
Q Consensus 285 ~~~~~~-~~~-~-~i~~~~~~~~~~~l~~~---~~dg~I~i~d~~~~~~-~~~~~-~h~~~I~~l~~spdg~~l~s-~s~ 355 (685)
+.+..+ ..+ . .+.++.|+|++.++++| +.|+.|++||+.+++. +.... .|...|.+++|+|++++|++ ++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 209 TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence 988887 333 3 38999999999999999 7899999999998754 33333 57788999999999999975 557
Q ss_pred CCcEEEEEcCCCce-eeEEe---eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 356 DGSLRIWDVILARQ-IDAIH---VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 356 Dg~I~iwd~~~~~~-i~~~~---~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
||.|++||+.+++. +..+. +..+|++++|+|++.+++++ ++ .+++|+..
T Consensus 289 dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~--~~-~~~~~~l~ 341 (402)
T 2aq5_A 289 DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK--CE-IARFYKLH 341 (402)
T ss_dssp CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG--TE-EEEEEEEE
T ss_pred CCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec--ce-eEEEEEcC
Confidence 99999999999884 44443 34669999999999998763 54 89999854
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-32 Score=288.25 Aligned_cols=287 Identities=11% Similarity=0.057 Sum_probs=230.6
Q ss_pred ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec-------------------------------------
Q 005656 46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR------------------------------------- 88 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~------------------------------------- 88 (685)
..++.+++|+|+|++|+++ .++.|++||+.++... ..+..+
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHW-EFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEE-EEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcc-eeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 4588999999999977666 5789999998876400 022111
Q ss_pred -----------------ccCCCCCeEEEEecCCCEE-EEEeCCCceEEEEee--cCceeeEechhhHHHHHhhccccccc
Q 005656 89 -----------------SGHSAPPLCIRFYANGRHI-LSAGQDRAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEE 148 (685)
Q Consensus 89 -----------------~~h~~~v~~i~~~~~~~~l-~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (685)
.+|...|.+++|+|++++| ++++.||.|++||+. ++.....+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------- 146 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------------- 146 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---------------
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc---------------
Confidence 2455579999999999996 889999999999998 66554443210
Q ss_pred cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 005656 149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER 228 (685)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~ 228 (685)
.+...+.+++|+|+|+++++|+.+|.|++
T Consensus 147 ---------------------------------------------------~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 147 ---------------------------------------------------CFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp ---------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ---------------------------------------------------cCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 34577999999999999999999999999
Q ss_pred EECCCCcccc-ccccccccccCCCCcCEEEEEEcCC---CCEEEEEECCCeEEEEECCCCceEEEe--ecCCceeEEEEe
Q 005656 229 FNLQSGISRG-SYLDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRDLKSRW--EVGCSLVKIVYH 302 (685)
Q Consensus 229 ~d~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~i~~~~~~ 302 (685)
|++.++.... ... ...+|...|.+++|+|+ +++|++++.|+.|++||+.+++.+..+ .+...|.+++|+
T Consensus 176 ~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s 250 (450)
T 2vdu_B 176 IDINSIPEEKFTQE-----PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG 250 (450)
T ss_dssp EETTSCCCSSCCCC-----CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred EecCCcccccccce-----eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence 9998877654 110 12279999999999999 999999999999999999998877663 355899999999
Q ss_pred ecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-------------------------CCCCeEEEEEcCCCCEEEEEe-CC
Q 005656 303 RVNGLLATVADDLVIRLFDVVALRMVRKFEG-------------------------HTDRITDFCFSEDGKWLLSSG-MD 356 (685)
Q Consensus 303 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-------------------------h~~~I~~l~~spdg~~l~s~s-~D 356 (685)
++++|++++.|+.|++||+.+++++..+.. +...|.+++|+|++++|++++ .|
T Consensus 251 -d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d 329 (450)
T 2vdu_B 251 -KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT 329 (450)
T ss_dssp -STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC
T ss_pred -CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC
Confidence 999999999999999999999999888873 235699999999999999998 89
Q ss_pred CcEEEEEc--CCC---ceeeEEeeccceEEEEEcCCCCeEEEEEeC-----CCeEEEEEc
Q 005656 357 GSLRIWDV--ILA---RQIDAIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVN 406 (685)
Q Consensus 357 g~I~iwd~--~~~---~~i~~~~~~~~v~~v~~spdg~~Lat~~~d-----~~~I~lW~~ 406 (685)
+.|++|++ .++ ..+..+..+..|.+++|+|++.++++++.+ .+.|.+|..
T Consensus 330 ~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 330 KCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp SEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred CeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 99999999 666 677778878789999999965444444432 235888864
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=7.7e-32 Score=278.73 Aligned_cols=285 Identities=12% Similarity=0.139 Sum_probs=209.5
Q ss_pred EEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEE-
Q 005656 29 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI- 107 (685)
Q Consensus 29 vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l- 107 (685)
||++.+++.+.... +|.+.|++++|+|||++|++|+.|+ +++|+.+.. ...... +...+..+.+.++++.+
T Consensus 3 i~s~~~~~~~~~~~-~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPEN-HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV----AHIMSQ--EMRHLSKVRMLHRTNYVA 74 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE----EEEEEE--ECSCCCEEEECTTSSEEE
T ss_pred cccccccCCccccc-cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc----ceeeee--ecCCeEEEEEcCCCCEEE
Confidence 56777777776666 8999999999999999999998774 789998764 333222 22358889999988877
Q ss_pred EEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCc
Q 005656 108 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 187 (685)
Q Consensus 108 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 187 (685)
++++.|++|++||+.+++....+
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~--------------------------------------------------------- 97 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRI--------------------------------------------------------- 97 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEE---------------------------------------------------------
T ss_pred EEECCccEEEEEECCCCcEEEEE---------------------------------------------------------
Confidence 56778899999999888765544
Q ss_pred cccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC-ccccccccccccccCCCCcCEEEEEEcCCCCE
Q 005656 188 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 266 (685)
Q Consensus 188 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 266 (685)
.+...|.++++++++ ++++ .++.|++||+.++ .....+. . ....+++++ .+
T Consensus 98 ------------~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~--------~---~~~~~~~s~--~~ 149 (355)
T 3vu4_A 98 ------------KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDI--------R---FGGVCEFSN--GL 149 (355)
T ss_dssp ------------ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCE--------E---EEEEEEEET--TE
T ss_pred ------------ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEec--------c---CCceEEEEc--cE
Confidence 234578899998764 3333 4789999999988 5554442 1 334455666 56
Q ss_pred EEE--EECCCeEEEEECCCCc---------------e-EEEee-cCCceeEEEEeecCCEEEEEeCCCe-EEEEEcCCCe
Q 005656 267 MIS--AGYHGDIKVWDFKGRD---------------L-KSRWE-VGCSLVKIVYHRVNGLLATVADDLV-IRLFDVVALR 326 (685)
Q Consensus 267 l~s--~s~dg~i~iwd~~~~~---------------~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~-I~i~d~~~~~ 326 (685)
+++ |+.||.|++||+.++. + ...+. +...|.+++|+|++++|++|+.|++ |++||+.+++
T Consensus 150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 665 5789999999999865 1 34443 4589999999999999999999998 9999999999
Q ss_pred eEEEEe-c-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeE--------------------Eee----ccceE
Q 005656 327 MVRKFE-G-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA--------------------IHV----DVSIT 380 (685)
Q Consensus 327 ~~~~~~-~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~--------------------~~~----~~~v~ 380 (685)
++..+. + |...|++++|+|||++|++++.|++|++||+..+..... +.. ..+..
T Consensus 230 ~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T 3vu4_A 230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGC 309 (355)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCC
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCce
Confidence 999998 6 999999999999999999999999999999976532111 111 11247
Q ss_pred EEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 381 ALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 381 ~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.++|+|+|++|++++.|| .+++|+..
T Consensus 310 ~~a~~~d~~~l~~~~~dg-~~~~~~~~ 335 (355)
T 3vu4_A 310 KIAWISESSLVVVWPHTR-MIETFKVV 335 (355)
T ss_dssp EEEESSSSEEEEEETTTT-EEEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCC-eEEEEEEE
Confidence 799999999999999987 99999753
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.8e-32 Score=286.61 Aligned_cols=295 Identities=13% Similarity=0.223 Sum_probs=233.8
Q ss_pred cEEEEEEccCCC---------CEEEEEeC----CCcEEEEeCC--------------------------CCeeeEEeecc
Q 005656 4 AVTALAFSSDGQ---------PLLASGAS----SGVISIWNLE--------------------------KRRLQSVIREA 44 (685)
Q Consensus 4 ~V~~l~fspdg~---------~~latg~~----dg~I~vwd~~--------------------------~~~~~~~~~~~ 44 (685)
|..++.|.|+.. .++++|+. ...|.++++. +++.......+
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN 126 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence 456788888752 36778764 3467777542 12222222237
Q ss_pred cccCeeEEEEeCC-CcEEEEecCCCcEEEEEecCC------CCCCceeEecccCCCCCeEEEEecCCC-EEEEEeCCCce
Q 005656 45 HDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTT------DGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAF 116 (685)
Q Consensus 45 h~~~V~~l~~sp~-~~~l~s~s~D~~v~iWd~~~~------~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~dg~i 116 (685)
|.+.|++++|+|+ +.+|++++.||.|++|++... .+....+..+.+|...|.+++|+|++. +|++|+.||.|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 9999999999997 679999999999999999762 112355667789999999999999988 99999999999
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
++|++..+....... ....
T Consensus 207 ~vwd~~~~~~~~~~~-------------------------------------------------------------~~~~ 225 (430)
T 2xyi_A 207 CLWDINATPKEHRVI-------------------------------------------------------------DAKN 225 (430)
T ss_dssp EEEETTSCCBGGGEE-------------------------------------------------------------ECSE
T ss_pred EEEeCCCCCCCCcee-------------------------------------------------------------ccce
Confidence 999997642210000 0000
Q ss_pred CCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCc---cccccccccccccCCCCcCEEEEEEcCCCC-EEEEEE
Q 005656 197 PCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGI---SRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG 271 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s 271 (685)
....+...|.+++|+| ++.++++++.+|.|++||++++. ....+ ..|...|++++|+|++. ++++|+
T Consensus 226 ~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~v~~i~~~p~~~~~l~tg~ 297 (430)
T 2xyi_A 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV--------DAHTAEVNCLSFNPYSEFILATGS 297 (430)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE--------ECCSSCEEEEEECSSCTTEEEEEE
T ss_pred eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe--------ecCCCCeEEEEeCCCCCCEEEEEe
Confidence 1115678899999999 78899999999999999999873 33332 28999999999999987 688999
Q ss_pred CCCeEEEEECCC-CceEEEee-cCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCC--------------CeeEEEEecC
Q 005656 272 YHGDIKVWDFKG-RDLKSRWE-VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVA--------------LRMVRKFEGH 334 (685)
Q Consensus 272 ~dg~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~--------------~~~~~~~~~h 334 (685)
.||.|++||+++ +..+..+. +...|.+++|+|++. +|++++.|+.|++||+.. .+.+..+.+|
T Consensus 298 ~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 377 (430)
T 2xyi_A 298 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377 (430)
T ss_dssp TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC
T ss_pred CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC
Confidence 999999999997 45566665 558999999999995 799999999999999987 3677888899
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 005656 335 TDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 335 ~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~ 367 (685)
...|++++|+|+++ +|++++.||.|+||++..+
T Consensus 378 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 378 TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999999999999 8999999999999998764
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.3e-31 Score=285.39 Aligned_cols=280 Identities=10% Similarity=0.098 Sum_probs=238.7
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEee----cccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
+.+.+++|+|++. ++++++.++.|++||+.+++....+. .+|.+.|.+++|+|++.++++++.|+.|++||++++
T Consensus 123 ~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 123 FQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp SCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 3466899999666 88888899999999999998876332 278899999999999999999999999999998876
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
+.+..+..|...+.+++|+|+++++++++ .|+.|++||+.+++....+
T Consensus 202 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--------------------------- 250 (433)
T 3bws_A 202 ----AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT--------------------------- 250 (433)
T ss_dssp ----CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC---------------------------
T ss_pred ----eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe---------------------------
Confidence 56666778999999999999999886555 7999999999877654433
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe--------cCCcEEEE
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--------AGGWIERF 229 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--------~dg~i~~~ 229 (685)
.....+.+++++|+|+++++++ .+|.|++|
T Consensus 251 ------------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~ 288 (433)
T 3bws_A 251 ------------------------------------------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIY 288 (433)
T ss_dssp ------------------------------------------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEE
T ss_pred ------------------------------------------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEE
Confidence 2234588999999999999988 58899999
Q ss_pred ECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE-EEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEE
Q 005656 230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 308 (685)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 308 (685)
|+.++.....+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++....+.....+.+++|+|+++++
T Consensus 289 d~~~~~~~~~~---------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 359 (433)
T 3bws_A 289 SMDKEKLIDTI---------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYL 359 (433)
T ss_dssp ETTTTEEEEEE---------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred ECCCCcEEeec---------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEE
Confidence 99988766554 566789999999999755 56688999999999999999888888899999999999988
Q ss_pred EEEeC---------------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 005656 309 ATVAD---------------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM-DGSLRIWDVIL 366 (685)
Q Consensus 309 ~~~~~---------------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~-Dg~I~iwd~~~ 366 (685)
++++. ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |+.|++|++..
T Consensus 360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 88876 57999999999999998886 457999999999999998875 99999999863
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=318.52 Aligned_cols=336 Identities=14% Similarity=0.120 Sum_probs=239.7
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCC--CCeeeEEeecccccCeeEEEEeCC--CcEEEEecCCCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLE--KRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~--~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~D~~v~iWd~~ 76 (685)
|+++|++++|+|+|+ +|++|+.||.|+|||+. +++....+. +|.++|++++|+|+ +++|++|+.||+|++||+.
T Consensus 8 H~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 8 HNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred CcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence 899999999999999 99999999999999998 456777777 99999999999998 8999999999999999998
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
.+. ........+|..+|++++|+|+ ++.+++|+.||.|++||+.++.......
T Consensus 86 ~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~----------------------- 140 (753)
T 3jro_A 86 NGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII----------------------- 140 (753)
T ss_dssp TTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE-----------------------
T ss_pred CCc--ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE-----------------------
Confidence 752 2366777899999999999999 9999999999999999997763221110
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-------------CCCEEEEEe
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-------------CGNFAVLGT 221 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------~g~~l~~g~ 221 (685)
...+...+.+++|+| +++++++|+
T Consensus 141 -------------------------------------------~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs 177 (753)
T 3jro_A 141 -------------------------------------------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177 (753)
T ss_dssp -------------------------------------------EECCSSCEEEEEECCCC---------CGGGCCEEEEE
T ss_pred -------------------------------------------eecCCCceEEEEecCcccccccccccCCCCCEEEEEE
Confidence 015678899999999 599999999
Q ss_pred cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC---CCEEEEEECCCeEEEEECCCCce------EEEeec
Q 005656 222 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRDL------KSRWEV 292 (685)
Q Consensus 222 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~ 292 (685)
.||.|++||+.++....... ....+|.+.|++++|+|+ +.++++++.||.|++||+.++.. .....+
T Consensus 178 ~dg~I~iwd~~~~~~~~~~~----~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 253 (753)
T 3jro_A 178 ADNLVKIWKYNSDAQTYVLE----STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253 (753)
T ss_dssp TTSCEEEEEEETTTTEEEEE----EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC
T ss_pred CCCeEEEEeccCCcccceee----eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC
Confidence 99999999998875332211 122389999999999999 89999999999999999988631 122234
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCc-e
Q 005656 293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDG-SLRIWDVILAR-Q 369 (685)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg-~I~iwd~~~~~-~ 369 (685)
...+.+++|+|+++++++|+.||.|++||+.++........ +...-......+.+..+......+ .+..++..... .
T Consensus 254 ~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 333 (753)
T 3jro_A 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDN 333 (753)
T ss_dssp SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCBCCCCBC----------------------------------CCS
T ss_pred CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcccccccccccCCCCCCccccccccCcCCchhhhhhcccccchHH
Confidence 57899999999999999999999999999986432211110 100000001111111111111111 11222111110 0
Q ss_pred e----eEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCCc
Q 005656 370 I----DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 410 (685)
Q Consensus 370 i----~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~~ 410 (685)
. ...+...++..+.|++||++|+.+..+...+++......+
T Consensus 334 ~k~i~~~~rl~s~~~~~~fs~dg~lL~~~~~~~~~~~~~~~ps~~ 378 (753)
T 3jro_A 334 AKLIMKERRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTEL 378 (753)
T ss_dssp HHHHHHTTTCCSCCCCCCBCTTSCBCEECSSSTTSEECCCCCCCC
T ss_pred HHHHHHHhhccCCcceeEeCCCCeeeeccCCCccceEEeeccccc
Confidence 0 0111234567789999999999887665567776554443
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.8e-31 Score=276.01 Aligned_cols=282 Identities=13% Similarity=0.139 Sum_probs=214.1
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTD 79 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~ 79 (685)
|+++|++++|+|||+ +||+|+.+| ++|||+.+++...... ...+..+++.++++.+ ++++.|++|++||..++
T Consensus 18 h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~- 91 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQE---MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK- 91 (355)
T ss_dssp -CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEEE---CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT-
T ss_pred CCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeeee---cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC-
Confidence 778999999999999 999998776 7899999887665543 2358899999988877 56778899999998876
Q ss_pred CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC-ceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
+.+..+. |..+|.++.|+++. ++++ .|+.|++||+.+. +....+.
T Consensus 92 ---~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~--------------------------- 137 (355)
T 3vu4_A 92 ---QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDI--------------------------- 137 (355)
T ss_dssp ---EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCE---------------------------
T ss_pred ---cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEec---------------------------
Confidence 5565554 67799999998763 4444 4889999999766 3322221
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE--EecCCcEEEEECCCCcc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGIS 236 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~dg~i~~~d~~~~~~ 236 (685)
. ....+++++ +++++ |+.+|.|++||+.++..
T Consensus 138 -----------------------------------------~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~ 171 (355)
T 3vu4_A 138 -----------------------------------------R---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGS 171 (355)
T ss_dssp -----------------------------------------E---EEEEEEEET--TEEEEEESSCTTCEEEEECCC---
T ss_pred -----------------------------------------c---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCc
Confidence 0 233445566 55655 68899999999998651
Q ss_pred ccccccc-------c-ccccCCCCcCEEEEEEcCCCCEEEEEECCCe-EEEEECCCCceEEEee---cCCceeEEEEeec
Q 005656 237 RGSYLDM-------S-ERSNYAHNGEVVGVACDSTNTLMISAGYHGD-IKVWDFKGRDLKSRWE---VGCSLVKIVYHRV 304 (685)
Q Consensus 237 ~~~~~~~-------~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~ 304 (685)
....... + .....+|.+.|++++|+|++++|++|+.||+ |++||+.+++.+..+. +...|.+++|+|+
T Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~ 251 (355)
T 3vu4_A 172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTD 251 (355)
T ss_dssp ---------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTT
T ss_pred cccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCC
Confidence 1100000 0 1123389999999999999999999999998 9999999999999887 5689999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeE--EEEe---------------------cCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005656 305 NGLLATVADDLVIRLFDVVALRMV--RKFE---------------------GHTDRITDFCFSEDGKWLLSSGMDGSLRI 361 (685)
Q Consensus 305 ~~~l~~~~~dg~I~i~d~~~~~~~--~~~~---------------------~h~~~I~~l~~spdg~~l~s~s~Dg~I~i 361 (685)
+++|++++.|++|++||+..+... ..+. .+......++|++||++|++++.||.+++
T Consensus 252 ~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~ 331 (355)
T 3vu4_A 252 GSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET 331 (355)
T ss_dssp SCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE
Confidence 999999999999999999765311 1110 11223477999999999999999999999
Q ss_pred EEcCCCc
Q 005656 362 WDVILAR 368 (685)
Q Consensus 362 wd~~~~~ 368 (685)
|++..+.
T Consensus 332 ~~~~~~~ 338 (355)
T 3vu4_A 332 FKVVFDD 338 (355)
T ss_dssp EEEEEET
T ss_pred EEEEcCC
Confidence 9987644
No 116
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.7e-32 Score=288.37 Aligned_cols=284 Identities=15% Similarity=0.237 Sum_probs=211.6
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC-------CCCceeEecccCC------------CCCeEEEEecCC
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-------GDPRLLRFRSGHS------------APPLCIRFYANG 104 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~-------~~~~~~~~~~~h~------------~~v~~i~~~~~~ 104 (685)
.|.+.|++++|+|++++|++|+.||.|++|++.... ...++...+.+|. .+|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478999999999999999999999999999998763 2233577788998 899999999998
Q ss_pred --CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEE
Q 005656 105 --RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 182 (685)
Q Consensus 105 --~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (685)
.+|++++.||+|++|++.++............ . +.+.
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~-----------~-----------------------------g~~~- 144 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEE-----------D-----------------------------GRYR- 144 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC------------------------------------------------
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCc-----------c-----------------------------cccc-
Confidence 79999999999999999876543221100000 0 0000
Q ss_pred EEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC
Q 005656 183 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 262 (685)
Q Consensus 183 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 262 (685)
... . .....+. .+.+.+ ..+.. .....+ ..+|...|.+++|+|
T Consensus 145 -~~~-------~-----~~~~~~~--~~~~~~-~~~~~--------------~~~~~~-------~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 145 -DPT-------T-----VTTLRVP--VFRPMD-LMVEA--------------SPRRIF-------ANAHTYHINSISINS 187 (447)
T ss_dssp --CC-------C-----CCSCCCC--EEEEEE-EEEEE--------------EEEEEE-------CSCCSSCCCEEEECT
T ss_pred -Ccc-------c-----ccceEec--cccchh-eeeec--------------cceEEe-------ccCCCcceEEEEEcC
Confidence 000 0 0000000 001100 00000 001111 127999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCC-CceEEEe--------ecCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCee----E
Q 005656 263 TNTLMISAGYHGDIKVWDFKG-RDLKSRW--------EVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRM----V 328 (685)
Q Consensus 263 ~~~~l~s~s~dg~i~iwd~~~-~~~~~~~--------~~~~~i~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~----~ 328 (685)
++++|++| .||.|++||+.+ ++....+ .+...|.+++|+|++ .+|++|+.||.|++||+++++. +
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 99999998 799999999984 4444432 345789999999998 8999999999999999999887 7
Q ss_pred EEEecCCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeEEeeccce----------------
Q 005656 329 RKFEGHTD------------RITDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVSI---------------- 379 (685)
Q Consensus 329 ~~~~~h~~------------~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~-~~~i~~~~~~~~v---------------- 379 (685)
..+.+|.. .|++++|+|+|++|++++. +.|++||+.+ ++++..+..+..+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 345 (447)
T 3dw8_B 267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDK 345 (447)
T ss_dssp EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccc
Confidence 88888886 8999999999999999998 9999999997 8888888877653
Q ss_pred EEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 380 TALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 380 ~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
..++|+|+|++|++++.|+ .|++|+...
T Consensus 346 ~~~~~s~~~~~l~s~s~dg-~v~iwd~~~ 373 (447)
T 3dw8_B 346 FECCWNGSDSVVMTGSYNN-FFRMFDRNT 373 (447)
T ss_dssp CCEEECTTSSEEEEECSTT-EEEEEETTT
T ss_pred eEEEECCCCCEEEEeccCC-EEEEEEcCC
Confidence 3499999999999999997 999998653
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.4e-30 Score=277.02 Aligned_cols=302 Identities=15% Similarity=0.184 Sum_probs=228.4
Q ss_pred cCeeEEEEeCCC----------cEEEEecC----CCcEEEEEecCC----------------------CCCCce-eEecc
Q 005656 47 NAIISLHFFANE----------PVLMSASA----DNSIKMWIFDTT----------------------DGDPRL-LRFRS 89 (685)
Q Consensus 47 ~~V~~l~~sp~~----------~~l~s~s~----D~~v~iWd~~~~----------------------~~~~~~-~~~~~ 89 (685)
-+..++.|.|+. .+++.|+. .+.|.+.+++.. ...++. .....
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 467888898865 35776654 456777765411 001111 23446
Q ss_pred cCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCc
Q 005656 90 GHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 168 (685)
Q Consensus 90 ~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (685)
+|.+.|++++|+|+ +.+|++++.||.|++|++.......... ...
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~-----------------~~~----------------- 171 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS-----------------GEC----------------- 171 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT-----------------CCC-----------------
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc-----------------ccC-----------------
Confidence 89999999999997 7799999999999999997531110000 000
Q ss_pred ceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEECCCCccccccccccccc
Q 005656 169 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGISRGSYLDMSERS 247 (685)
Q Consensus 169 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~ 247 (685)
........|...+.+++|+|++. ++++|+.+|.|++|++.++........ ....
T Consensus 172 ------------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~ 226 (430)
T 2xyi_A 172 ------------------------QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNI 226 (430)
T ss_dssp ------------------------CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE-CSEE
T ss_pred ------------------------CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec-ccee
Confidence 00000116678899999999998 999999999999999998543221110 0112
Q ss_pred cCCCCcCEEEEEEcC-CCCEEEEEECCCeEEEEECCCC---ceEEEe-ecCCceeEEEEeecCC-EEEEEeCCCeEEEEE
Q 005656 248 NYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGR---DLKSRW-EVGCSLVKIVYHRVNG-LLATVADDLVIRLFD 321 (685)
Q Consensus 248 ~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~---~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d 321 (685)
..+|...|.+++|+| ++.++++++.||.|++||++++ +....+ .+...+.+++|+|++. ++++|+.||.|++||
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd 306 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEe
Confidence 238999999999999 6789999999999999999976 455555 4558899999999987 799999999999999
Q ss_pred cCC-CeeEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC--------------CceeeEEeecc-ceEEEEE
Q 005656 322 VVA-LRMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVIL--------------ARQIDAIHVDV-SITALSL 384 (685)
Q Consensus 322 ~~~-~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~--------------~~~i~~~~~~~-~v~~v~~ 384 (685)
+++ +.++..+.+|...|++++|+|+++ +|++++.||.|++||+.. ..++..+..+. .|++++|
T Consensus 307 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 386 (430)
T 2xyi_A 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386 (430)
T ss_dssp TTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred CCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence 998 577889999999999999999995 799999999999999987 24555555554 4999999
Q ss_pred cCCCC-eEEEEEeCCCeEEEEEcCC
Q 005656 385 SPNMD-VLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 385 spdg~-~Lat~~~d~~~I~lW~~~~ 408 (685)
+|+++ +|++++.|+ .|++|+...
T Consensus 387 ~p~~~~~l~s~s~dg-~i~iw~~~~ 410 (430)
T 2xyi_A 387 NPNEPWIICSVSEDN-IMQVWQMAE 410 (430)
T ss_dssp CSSSTTEEEEEETTS-EEEEEEECH
T ss_pred CCCCCCEEEEEECCC-CEEEeEccc
Confidence 99999 788888776 999998653
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-32 Score=282.19 Aligned_cols=260 Identities=10% Similarity=0.095 Sum_probs=210.2
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
.-...|.+++|+|||+++||++.|++|+ |.... + .+.+|...|.+++|+|+| .++.+.+|+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~----~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~ 76 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA----K---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQ 76 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC----S---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc----c---eecCCCccEEEEEECCCC-------CcceEEEEeCCC
Confidence 4568999999999999999999999999 64333 2 336999999999999999 566666665422
Q ss_pred CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656 124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 203 (685)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 203 (685)
.. .+. . .+..
T Consensus 77 ~~---~~~------------------------------------------------------------------~-~~~~ 86 (588)
T 2j04_A 77 NG---LLN------------------------------------------------------------------S-QPVC 86 (588)
T ss_dssp SC---SST------------------------------------------------------------------T-SCSC
T ss_pred ce---Eee------------------------------------------------------------------c-CCCC
Confidence 11 110 0 2367
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc-----CEEEEEEcCCCCEEEEEECCCeEEE
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG-----EVVGVACDSTNTLMISAGYHGDIKV 278 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~s~s~dg~i~i 278 (685)
.|.+++|||+|..+++++.+|.|++||.++ ....+ .|.. .|.+++|+|+|++|++|+.||+|++
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l---------~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL---------DSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC---------CCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec---------cCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 899999999999999999999999999654 22211 2333 5999999999999999999999999
Q ss_pred EECCCCce-------EEEeec-----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe---eEEEEe-cCCCCeEEEE
Q 005656 279 WDFKGRDL-------KSRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR---MVRKFE-GHTDRITDFC 342 (685)
Q Consensus 279 wd~~~~~~-------~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~---~~~~~~-~h~~~I~~l~ 342 (685)
||+.++.. +.++.. ...|.+++|+|+| +++++.|++|++||+.+++ ..+++. +|...|.+++
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 99998853 455532 2589999999999 8889999999999999877 346774 7889999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceee-EEeeccceEEEEE--cCCCCeEEEEEeCCCeEEEEEcC
Q 005656 343 FSEDGKWLLSSGMDGSLRIWDVILARQID-AIHVDVSITALSL--SPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 343 ~spdg~~l~s~s~Dg~I~iwd~~~~~~i~-~~~~~~~v~~v~~--spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
|+ |++||+++ +++|++||+.+++... .+.+...|.+++| +|++..|++++.|| . ++|...
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG-~-klw~~d 296 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS-Y-KVLLED 296 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE-E-EEEESS
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC-C-EEEeec
Confidence 99 68999997 6999999999888743 3345555999999 99999999999887 7 999854
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-32 Score=277.35 Aligned_cols=273 Identities=12% Similarity=0.084 Sum_probs=207.5
Q ss_pred EeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechh
Q 005656 54 FFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR 133 (685)
Q Consensus 54 ~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 133 (685)
+.+++.+|++|+.||+|++||+..+ +.+..+. ...|.++.|+|+ +++++.|++|++|+....
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~----~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~--------- 105 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDS----KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ--------- 105 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSS----SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTE---------
T ss_pred hcCCCCEEEEECCCCcEEEEECCCC----cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCc---------
Confidence 3456778888888889999988776 3333332 456777788877 888888898998886432
Q ss_pred hHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-
Q 005656 134 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA- 212 (685)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 212 (685)
+.+|+.......... ...+...|.+++++|
T Consensus 106 ----------------------------------------------~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 106 ----------------------------------------------ITILDSKTNKVLREI---EVDSANEIIYMYGHNE 136 (343)
T ss_dssp ----------------------------------------------EEEEETTTCCEEEEE---ECCCSSCEEEEECCC-
T ss_pred ----------------------------------------------eEEeecCCcceeEEe---ecCCCCCEEEEEcCCC
Confidence 223333322211111 114567899999999
Q ss_pred -CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE-EEe
Q 005656 213 -CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRW 290 (685)
Q Consensus 213 -~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~ 290 (685)
+++++++|+.||.|++||+.++....... ..|...|.+++|+|++.++++|+.||.|++||+++++.. ..+
T Consensus 137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~ 209 (343)
T 3lrv_A 137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHS-------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF 209 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEEC-------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE
Confidence 99999999999999999999988754432 156668999999999999999999999999999998877 666
Q ss_pred ec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec---CCCCeE--EEEEcCCCCEEEEEeC-CCcEEEE
Q 005656 291 EV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG---HTDRIT--DFCFSEDGKWLLSSGM-DGSLRIW 362 (685)
Q Consensus 291 ~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~I~--~l~~spdg~~l~s~s~-Dg~I~iw 362 (685)
.. ..+|.+++|+|++.+|++++. +.|++||+++++.+..+.. |...+. +++|+|+|++|++++. |+.|++|
T Consensus 210 ~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 210 PVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIY 288 (343)
T ss_dssp CCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEE
Confidence 54 589999999999999999995 4999999999877655443 444454 6999999999999998 9999999
Q ss_pred EcCCCceeeEEeeccceEEEEEcC---CCCeEEEEEeCCCeEEEEE
Q 005656 363 DVILARQIDAIHVDVSITALSLSP---NMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 363 d~~~~~~i~~~~~~~~v~~v~~sp---dg~~Lat~~~d~~~I~lW~ 405 (685)
++..+...... .++..++|+| ++..+++++.|+ .+.++.
T Consensus 289 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~-~~~~~~ 330 (343)
T 3lrv_A 289 KFDKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDG-GIAAIL 330 (343)
T ss_dssp EECTTTCSEEE---EEEEECCC----CCCCEEEEEEETT-EEEEEE
T ss_pred EEcccccceEe---cCceeEecCccccccceeEEEecCC-ceEEEE
Confidence 99766543332 5688999999 999999999998 788774
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=1.9e-29 Score=264.70 Aligned_cols=266 Identities=11% Similarity=0.123 Sum_probs=225.0
Q ss_pred cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEE-EEEeCCCceEEEEeecCceeeEechhhHHH
Q 005656 59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAK 137 (685)
Q Consensus 59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 137 (685)
.++++++.|+.|++||+.++ +.+..+.+|. .+.+++|+|+++++ ++++.|+.|++||+.+++....+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~----~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~------ 71 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN----KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP------ 71 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT----EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE------
T ss_pred EEEEEcCCCCEEEEEECCCC----eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE------
Confidence 47888999999999999876 6666666665 48999999999987 566789999999998876655442
Q ss_pred HHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEE
Q 005656 138 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 217 (685)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 217 (685)
....+.+++|+|+|+++
T Consensus 72 ---------------------------------------------------------------~~~~v~~~~~spdg~~l 88 (391)
T 1l0q_A 72 ---------------------------------------------------------------AGSSPQGVAVSPDGKQV 88 (391)
T ss_dssp ---------------------------------------------------------------CSSSEEEEEECTTSSEE
T ss_pred ---------------------------------------------------------------CCCCccceEECCCCCEE
Confidence 22378999999999988
Q ss_pred EEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE-EEEECCCeEEEEECCCCceEEEeecCCc
Q 005656 218 VLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVGCS 295 (685)
Q Consensus 218 ~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 295 (685)
++++ .++.|++||+.+++....+ .+...+.+++|+|+++.+ ++++.|+.|++||+.+++....+..+..
T Consensus 89 ~~~~~~~~~v~v~d~~~~~~~~~~---------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 159 (391)
T 1l0q_A 89 YVTNMASSTLSVIDTTSNTVAGTV---------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS 159 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEE---------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS
T ss_pred EEEECCCCEEEEEECCCCeEEEEE---------eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC
Confidence 6554 6699999999998876655 344578999999999977 6777899999999999999999888888
Q ss_pred eeEEEEeecCCEE-EEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCceee
Q 005656 296 LVKIVYHRVNGLL-ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG---MDGSLRIWDVILARQID 371 (685)
Q Consensus 296 i~~~~~~~~~~~l-~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s---~Dg~I~iwd~~~~~~i~ 371 (685)
+..++|+|+++.+ ++++.++.|++||+.+++.+..+. +...+.+++|+|+|++|++++ .++.|++||+.+++.+.
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~ 238 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE
Confidence 8999999999977 567788999999999999888876 556799999999999999888 68999999999999999
Q ss_pred EEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 372 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 372 ~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
.+..+..+.+++|+|+|++|++++..++.|++|+...
T Consensus 239 ~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 239 RIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 9988888999999999998865544445999999653
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.2e-31 Score=301.58 Aligned_cols=254 Identities=17% Similarity=0.234 Sum_probs=212.4
Q ss_pred EeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--CCEEEEEeCCCceE
Q 005656 40 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFR 117 (685)
Q Consensus 40 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~dg~i~ 117 (685)
.+. +|.++|++++|+|++++|++|+.||+|++|++..+. ......+.+|..+|++++|+|+ +++|++|+.||.|+
T Consensus 4 ~l~-gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE--EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred ecc-cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC--CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 444 999999999999999999999999999999987432 2667778899999999999988 99999999999999
Q ss_pred EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656 118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 197 (685)
Q Consensus 118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 197 (685)
+||+.++.......
T Consensus 81 vwd~~~~~~~~~~~------------------------------------------------------------------ 94 (753)
T 3jro_A 81 IWKEENGRWSQIAV------------------------------------------------------------------ 94 (753)
T ss_dssp EEEEETTEEEEEEE------------------------------------------------------------------
T ss_pred EEECCCCccccccc------------------------------------------------------------------
Confidence 99998765211110
Q ss_pred CCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-------------
Q 005656 198 CPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS------------- 262 (685)
Q Consensus 198 ~~~~~~~v~~~~~s~~--g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------------- 262 (685)
...+...|.+++|+|+ ++++++|+.||.|++||+.++...... ...+|...|.+++|+|
T Consensus 95 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~ 168 (753)
T 3jro_A 95 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGVNSASWAPATIEEDGEHNGTK 168 (753)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE------EEECCSSCEEEEEECCCC---------CG
T ss_pred ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee------EeecCCCceEEEEecCcccccccccccCC
Confidence 0157789999999999 999999999999999999987443222 1238999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCC----ceEEEee-cCCceeEEEEeec---CCEEEEEeCCCeEEEEEcCCCe-----eEE
Q 005656 263 TNTLMISAGYHGDIKVWDFKGR----DLKSRWE-VGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALR-----MVR 329 (685)
Q Consensus 263 ~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~-~~~~i~~~~~~~~---~~~l~~~~~dg~I~i~d~~~~~-----~~~ 329 (685)
++.++++|+.||.|++||++++ .....+. +..+|.+++|+|+ ++++++|+.||.|++||+.+++ .+.
T Consensus 169 d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 248 (753)
T 3jro_A 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL 248 (753)
T ss_dssp GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBS
T ss_pred CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEe
Confidence 5899999999999999999876 3444444 3588999999999 8999999999999999999864 333
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656 330 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 330 ~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
...+|...|++++|+|+|++|++|+.||.|++|++.++.
T Consensus 249 ~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 249 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 345688999999999999999999999999999998654
No 122
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=2.6e-29 Score=273.33 Aligned_cols=326 Identities=13% Similarity=0.066 Sum_probs=253.4
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEe--cCCCCCCceeE
Q 005656 9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF--DTTDGDPRLLR 86 (685)
Q Consensus 9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~--~~~~~~~~~~~ 86 (685)
+|+|++. ++++++.+++|.+||..+++++.++..+|. +.+++|+|||++|++++.|++|++||+ .+. +++.
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~----~~~~ 216 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP----TKVA 216 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC----EEEE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC----cEEE
Confidence 4889887 899999999999999999999999874444 899999999999999999999999999 443 5566
Q ss_pred ecccCCCCCeEEEEec----CCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 87 FRSGHSAPPLCIRFYA----NGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 87 ~~~~h~~~v~~i~~~~----~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
.+. +...+..++|+| +|+++++++. +++|.+||..+.+....+.....
T Consensus 217 ~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~-------------------------- 269 (543)
T 1nir_A 217 EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM-------------------------- 269 (543)
T ss_dssp EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--------------------------
T ss_pred EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCc--------------------------
Confidence 655 455679999999 9999999885 89999999988776665531000
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCC-CCCeEEEEEccCCCEE-EEEecCCcEEEEECCCCccccc
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN-PTAVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGS 239 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~ 239 (685)
.......+ ...+.++.++|++..+ ++...+|.|.+||+.++.....
T Consensus 270 --------------------------------~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~ 317 (543)
T 1nir_A 270 --------------------------------TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV 317 (543)
T ss_dssp --------------------------------CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE
T ss_pred --------------------------------ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee
Confidence 00000011 2368899999977654 5566789999999988654331
Q ss_pred cccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC-----CceeEEEEeec-CCEEEEEe
Q 005656 240 YLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRV-NGLLATVA 312 (685)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~ 312 (685)
. ...+...+.++.|+|+++++++++ .+++|.+||..++++...+... .....+ ++|+ +.+++++.
T Consensus 318 ~-------~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~ 389 (543)
T 1nir_A 318 T-------SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH 389 (543)
T ss_dssp E-------EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred E-------EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence 1 013456678899999999877665 6899999999999998887742 222222 5777 55666665
Q ss_pred -CCCeEEEEEcCC-------CeeEEEEecCCCCeEEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCcee-eEEe--
Q 005656 313 -DDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSG-------MDGSLRIWDVILARQI-DAIH-- 374 (685)
Q Consensus 313 -~dg~I~i~d~~~-------~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-------~Dg~I~iwd~~~~~~i-~~~~-- 374 (685)
.|++|.+||+.+ +++++++.+|.+.+..++|+|||++|++++ .+++|.+||+.+++.. ..+.
T Consensus 390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~ 469 (543)
T 1nir_A 390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 469 (543)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeech
Confidence 689999999998 899999999998899999999999999987 2779999999999887 5542
Q ss_pred -------eccceEEEEEcCCCCeEEEEEe----CCCeEEEEEcCC
Q 005656 375 -------VDVSITALSLSPNMDVLATAHV----DQNGVYLWVNRC 408 (685)
Q Consensus 375 -------~~~~v~~v~~spdg~~Lat~~~----d~~~I~lW~~~~ 408 (685)
+...+..+.|+|+|+.|+++.. +.+.|.|||.+.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 470 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp HHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred hhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 2345999999999999998854 235999998654
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.9e-29 Score=248.57 Aligned_cols=278 Identities=11% Similarity=0.177 Sum_probs=202.9
Q ss_pred EEEEEEccCC-C-CEEEEEeCCCcEEEEeCCCC---eeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656 5 VTALAFSSDG-Q-PLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 79 (685)
Q Consensus 5 V~~l~fspdg-~-~~latg~~dg~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~ 79 (685)
+.++-|-.-| + ..+++++ ...|++|+..++ +..++.. +|..+|..+.|.||..-|+... .+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVA-----------LG- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEE-----------EC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeee-----------ec-
Confidence 4555554433 2 3556666 577999999998 8899998 9999999999999864333221 11
Q ss_pred CCCceeEecccCCCCCeEEEEecC----CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 80 GDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
.-+...|.+++|+|| ++++++++.+ +++|++.+++......
T Consensus 108 ---------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~------------------------ 152 (356)
T 2w18_A 108 ---------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSG------------------------ 152 (356)
T ss_dssp ---------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEES------------------------
T ss_pred ---------cccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecc------------------------
Confidence 124556899999999 9999998854 7788774433222110
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC-CC
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ-SG 234 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~-~~ 234 (685)
.++ ++.|++|++. +|
T Consensus 153 -------------------------------------------~g~---------------------d~~V~~~~~s~dG 168 (356)
T 2w18_A 153 -------------------------------------------TLS---------------------DQQVEVMTFAEDG 168 (356)
T ss_dssp -------------------------------------------SST---------------------TCEEEEEEECTTS
T ss_pred -------------------------------------------cCC---------------------CCcEEEEEECCCC
Confidence 023 4455555552 23
Q ss_pred ccccccccccccccCCCCcCEEEEEEcC---CCCEEEEEECCCeEEEEECCCCceEEEeecC----CceeEEEEeecCCE
Q 005656 235 ISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGL 307 (685)
Q Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~i~~~~~~~~~~~ 307 (685)
+....+. .|...++.++|++ ++..|++++.|++|++||+++++.+.++..+ ..+.+++|+|+|.+
T Consensus 169 ~~~~s~~--------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 169 GGKENQF--------LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp CEEEEEE--------ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred ceeeeec--------cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 3333332 7888888888888 7799999999999999999999999998743 35778899999987
Q ss_pred E------------EEEeCCCeEEEEEcCCCeeEEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 308 L------------ATVADDLVIRLFDVVALRMVRKF-----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 308 l------------~~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
+ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++++.|++|+|||+.+++++
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l 318 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT 318 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE
Confidence 6 56788999999999999988776 3777776555554 889999999999999999999999
Q ss_pred eEEeeccc--eEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 371 DAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 371 ~~~~~~~~--v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
..+..|.. +.+++|||||++|++|+.|+ +|+||+.
T Consensus 319 ~tL~gH~~~vvs~vafSPDG~~LaSGS~D~-TIklWd~ 355 (356)
T 2w18_A 319 ALLPPVSDQHWSFVKWSGTDSHLLAGQKDG-NIFVYHY 355 (356)
T ss_dssp EEECCC--CCCCEEEECSSSSEEEEECTTS-CEEEEEE
T ss_pred EEecCCCCCeEEEEEECCCCCEEEEEECCC-cEEEecC
Confidence 99986644 45689999999999999997 9999984
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=9.3e-31 Score=274.64 Aligned_cols=258 Identities=13% Similarity=0.152 Sum_probs=174.2
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEeCCCCeeeE-----EeecccccCeeEEEEeC--------CCcEEEEecCCCcEEEEE
Q 005656 8 LAFSSDGQPLLASGASSGVISIWNLEKRRLQS-----VIREAHDNAIISLHFFA--------NEPVLMSASADNSIKMWI 74 (685)
Q Consensus 8 l~fspdg~~~latg~~dg~I~vwd~~~~~~~~-----~~~~~h~~~V~~l~~sp--------~~~~l~s~s~D~~v~iWd 74 (685)
..+++++. +||+|+.|++|+|||+.++.... .+. +|.+.|++++|+| |+++|||+|.|++|+|||
T Consensus 95 ~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 34445555 89999999999999999886543 234 8999999999998 889999999999999999
Q ss_pred ecCCCCCCceeEecccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
+..+ ..+....+|..+|.+++|+|++ .+|++++.||+|++||+.+++..........
T Consensus 173 ~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~------------------ 230 (393)
T 4gq1_A 173 LTDE----GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL------------------ 230 (393)
T ss_dssp EETT----EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------------------------
T ss_pred CCCC----ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC------------------
Confidence 9876 5566667899999999999987 4799999999999999987765443321000
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 233 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~ 233 (685)
.....+......+.....
T Consensus 231 ----------------------------------------------~~~~~~~s~~~~~~~~~~---------------- 248 (393)
T 4gq1_A 231 ----------------------------------------------VKNPWLLTLNTLPLVNTC---------------- 248 (393)
T ss_dssp ----------------------------------------------CSCCCSEEEESGGGC-------------------
T ss_pred ----------------------------------------------cccceEEecccccceeee----------------
Confidence 000001111110000000
Q ss_pred CccccccccccccccCCCCcCEEEEEEc-CCCCEEEEEECCCeEEEEECCCCceEEEee-------------------cC
Q 005656 234 GISRGSYLDMSERSNYAHNGEVVGVACD-STNTLMISAGYHGDIKVWDFKGRDLKSRWE-------------------VG 293 (685)
Q Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------------~~ 293 (685)
...+|...+.++.|. ++++.+++++.|+++++||+..++....+. ..
T Consensus 249 -------------~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T 4gq1_A 249 -------------HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF 315 (393)
T ss_dssp ----------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred -------------ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence 011556666666664 566666777777777777766544332221 11
Q ss_pred CceeEEEEee--cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 294 CSLVKIVYHR--VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 294 ~~i~~~~~~~--~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
.......++| ++.++++|+.||.|++||+.+++.+..+.+|..+|++++|||||++||+++.+| +.+|.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 2222334444 333677888999999999999999888889999999999999999999999776 6667654
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1e-29 Score=266.78 Aligned_cols=243 Identities=11% Similarity=0.043 Sum_probs=172.2
Q ss_pred CCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcce
Q 005656 91 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 170 (685)
Q Consensus 91 h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (685)
|...+....+.+++.+|++++.|++|++||+..+......
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~---------------------------------------- 127 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH---------------------------------------- 127 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE----------------------------------------
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee----------------------------------------
Confidence 3333444444556778999999999999999877543321
Q ss_pred EEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc--------CCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 171 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--------CGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 171 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--------~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
.+....+|...|.+++|+| +|++|++|+.|++|++||+.++.....+.
T Consensus 128 -----------------------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~- 183 (393)
T 4gq1_A 128 -----------------------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY- 183 (393)
T ss_dssp -----------------------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE-
T ss_pred -----------------------eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec-
Confidence 1223348899999999998 88999999999999999998877665543
Q ss_pred ccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEe--------------------------ecCCc
Q 005656 243 MSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW--------------------------EVGCS 295 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~--------------------------~~~~~ 295 (685)
.|...|.+++|+|++ .+|++++.||+|++||+.+++..... .+...
T Consensus 184 -------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 184 -------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp -------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred -------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 788999999999987 47999999999999999877543221 12256
Q ss_pred eeEEEEe-ecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcC--------------------CCCEEEEEe
Q 005656 296 LVKIVYH-RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE--------------------DGKWLLSSG 354 (685)
Q Consensus 296 i~~~~~~-~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp--------------------dg~~l~s~s 354 (685)
+.++.|+ |+++.+++++.|+++++||+.+++....+..|...+..+.++| ++.++++|+
T Consensus 257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs 336 (393)
T 4gq1_A 257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS 336 (393)
T ss_dssp CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence 7788887 7999999999999999999998887777777666555444433 334677888
Q ss_pred CCCcEEEEEcCCCceeeEEe-eccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 355 MDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 355 ~Dg~I~iwd~~~~~~i~~~~-~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
.||+|++||+.+++.+.... ++.+|++++|||||++||+++.+ ++.+|.+
T Consensus 337 ~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~--Gv~lvrL 387 (393)
T 4gq1_A 337 QHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG--SVLLTRL 387 (393)
T ss_dssp TTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS--EEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEE
Confidence 99999999999998877665 45569999999999999999865 6777753
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=1.7e-29 Score=266.56 Aligned_cols=299 Identities=11% Similarity=0.054 Sum_probs=234.3
Q ss_pred cEEEEEEccCCCCEEEEEe----CCC----cEEEEeC--CCCeee--EEeecccccCeeEEEEeC--------------C
Q 005656 4 AVTALAFSSDGQPLLASGA----SSG----VISIWNL--EKRRLQ--SVIREAHDNAIISLHFFA--------------N 57 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~----~dg----~I~vwd~--~~~~~~--~~~~~~h~~~V~~l~~sp--------------~ 57 (685)
.|...+|++.|..++++|+ .+| .|++||+ .+++.+ ..+. +|...+..+++++ .
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4566678888877888886 467 8999999 888876 4466 8988888888875 1
Q ss_pred CcEEEEecCC------CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC---ceEEEEeecCceee
Q 005656 58 EPVLMSASAD------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQSR 128 (685)
Q Consensus 58 ~~~l~s~s~D------~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~ 128 (685)
+..++.++.+ ++|++||++.. ....+.+|...+.+++|+|+|++|++++.++ .|++||+.+++...
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-----~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~ 217 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY-----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ 217 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC-----SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC-----CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE
Confidence 4555555543 79999998743 2455567899999999999999999999885 99999998775432
Q ss_pred EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656 129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 208 (685)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (685)
.. .+...+.++
T Consensus 218 l~---------------------------------------------------------------------~~~~~~~~~ 228 (415)
T 2hqs_A 218 VA---------------------------------------------------------------------SFPRHNGAP 228 (415)
T ss_dssp EE---------------------------------------------------------------------CCSSCEEEE
T ss_pred ee---------------------------------------------------------------------cCCCcccCE
Confidence 11 345678999
Q ss_pred EEccCCCEEE-EEecCCc--EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CC--eEEEEECC
Q 005656 209 TISACGNFAV-LGTAGGW--IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFK 282 (685)
Q Consensus 209 ~~s~~g~~l~-~g~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg--~i~iwd~~ 282 (685)
+|+|+|+.++ +++.+|. |++||+.++.... + ..|...+.+++|+|+|++|++++. ++ .|++||+.
T Consensus 229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~-l--------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-V--------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-C--------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred EEcCCCCEEEEEEecCCCceEEEEECCCCCEEe-C--------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 9999999888 5555554 9999999887532 2 267889999999999999988886 44 68888998
Q ss_pred CCceEEEeecCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--
Q 005656 283 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG-- 357 (685)
Q Consensus 283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg-- 357 (685)
+++..........+..++|+|+|++|++++.+ ..|++||+.+++. ..+..|. .+.+++|+|||++|++++.++
T Consensus 300 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~ 377 (415)
T 2hqs_A 300 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMG 377 (415)
T ss_dssp SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTE
T ss_pred CCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCc
Confidence 88765544455778899999999999888764 5899999999876 4566564 899999999999999988777
Q ss_pred -cEEEEEcCCCceeeEEeec-cceEEEEEcCCCC
Q 005656 358 -SLRIWDVILARQIDAIHVD-VSITALSLSPNMD 389 (685)
Q Consensus 358 -~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg~ 389 (685)
.|++||+.. .....+..+ ..|.+++|+|.-.
T Consensus 378 ~~l~~~d~~g-~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 378 SVLNLVSTDG-RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEETTS-CCEEECCCSSSEEEEEEECCCCC
T ss_pred cEEEEEECCC-CcEEEeeCCCCCCcCCccccccc
Confidence 799999874 445556554 5599999999653
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-29 Score=261.82 Aligned_cols=226 Identities=10% Similarity=0.128 Sum_probs=180.6
Q ss_pred EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656 100 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 179 (685)
Q Consensus 100 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (685)
+.+++..+++|+.||+|++||+.+++....+.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~------------------------------------------------ 75 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT------------------------------------------------ 75 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE------------------------------------------------
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe------------------------------------------------
Confidence 34577899999999999999998887655542
Q ss_pred EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC---------CccccccccccccccCC
Q 005656 180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS---------GISRGSYLDMSERSNYA 250 (685)
Q Consensus 180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---------~~~~~~~~~~~~~~~~~ 250 (685)
...+.++.++|+ +++|+.|+.|++|+... +.....+ ..+
T Consensus 76 ----------------------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~-------~~~ 123 (343)
T 3lrv_A 76 ----------------------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI-------EVD 123 (343)
T ss_dssp ----------------------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE-------ECC
T ss_pred ----------------------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe-------ecC
Confidence 012333445555 77888888888886653 3322222 126
Q ss_pred CCcCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe
Q 005656 251 HNGEVVGVACDS--TNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 326 (685)
Q Consensus 251 h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 326 (685)
|.+.|.+++|+| +++++++++.||+|++||+.+++....... ...+.+++|+|++.+|++|+.||.|++||+++++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 778999999999 999999999999999999999988765533 3579999999999999999999999999999998
Q ss_pred eE-EEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee---c-cce--EEEEEcCCCCeEEEEEe-C
Q 005656 327 MV-RKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV---D-VSI--TALSLSPNMDVLATAHV-D 397 (685)
Q Consensus 327 ~~-~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~---~-~~v--~~v~~spdg~~Lat~~~-d 397 (685)
.+ ..+.+ |.++|++++|+|+|.+|++++ |+.|++||+.+++.+..+.. + ..+ .+++|+|+|++|++++. |
T Consensus 204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d 282 (343)
T 3lrv_A 204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES 282 (343)
T ss_dssp SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence 87 88888 999999999999999999999 55999999999877655432 1 223 46999999999999998 6
Q ss_pred CCeEEEEEcC
Q 005656 398 QNGVYLWVNR 407 (685)
Q Consensus 398 ~~~I~lW~~~ 407 (685)
+ .|++|+..
T Consensus 283 ~-~i~v~~~~ 291 (343)
T 3lrv_A 283 N-SLTIYKFD 291 (343)
T ss_dssp T-EEEEEEEC
T ss_pred C-cEEEEEEc
Confidence 5 99999853
No 128
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=2.1e-28 Score=279.30 Aligned_cols=338 Identities=7% Similarity=0.049 Sum_probs=250.4
Q ss_pred CcEEEEEEccCCCCEEEEEeC-CC-----cEEEEeCCCCeeeEEeeccccc------------------------CeeEE
Q 005656 3 GAVTALAFSSDGQPLLASGAS-SG-----VISIWNLEKRRLQSVIREAHDN------------------------AIISL 52 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~-dg-----~I~vwd~~~~~~~~~~~~~h~~------------------------~V~~l 52 (685)
..|++++|||||+ +|++++. || .|++||+.+++....+. .|.. .|.++
T Consensus 37 ~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 37 PTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEEC-GGGTC--------------------CCEESCCC
T ss_pred CCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccc-hhhcccccccccchhhhhhhhhhhccccCccee
Confidence 4689999999999 8888887 88 89999999998877765 4433 38999
Q ss_pred EEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEech
Q 005656 53 HFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQ 132 (685)
Q Consensus 53 ~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 132 (685)
+|+|||++|++++. +.|++||+.++.. .....+..|...+.+++|+|||++|++++ ++.|++||+.+++.......
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~--~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGK--AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCST--TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCc--ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC
Confidence 99999999999886 8999999876510 02334557788899999999999999887 56899999877654322110
Q ss_pred hhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc
Q 005656 133 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA 212 (685)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 212 (685)
.. .. +.. .... .+.. .....+.+++|||
T Consensus 191 ~~-----------------~~-----------------~~~----------g~~~-----~v~~---~~~~~~~~~~~Sp 218 (741)
T 2ecf_A 191 GS-----------------TT-----------------IGN----------GIAE-----FVAD---EEMDRHTGYWWAP 218 (741)
T ss_dssp CC-----------------SS-----------------EEE----------SCCC-----HHHH---HHSCCCCSEEECT
T ss_pred Cc-----------------cc-----------------eec----------cccc-----eeee---eccccccceEECC
Confidence 00 00 000 0000 0000 0012256789999
Q ss_pred CCCEEEEEecCC---------------------------------cEEEEECCC-CccccccccccccccCCCCcCEEEE
Q 005656 213 CGNFAVLGTAGG---------------------------------WIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGV 258 (685)
Q Consensus 213 ~g~~l~~g~~dg---------------------------------~i~~~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~l 258 (685)
||++|++++.++ .|++||+.+ +....... ...|...+..+
T Consensus 219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~ 292 (741)
T 2ecf_A 219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDL------GKEQDIYLARV 292 (741)
T ss_dssp TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECC------CSCSSEEEEEE
T ss_pred CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecC------CCCcceEEEEE
Confidence 999999987765 788999988 76543321 11477889999
Q ss_pred EEcCCCCEEEEEEC-----CCeEEEEECCCCceEEEeecCC-----ceeEEEEeecCCEEEEEeCCCeEEEEEcC-CCee
Q 005656 259 ACDSTNTLMISAGY-----HGDIKVWDFKGRDLKSRWEVGC-----SLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRM 327 (685)
Q Consensus 259 ~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~ 327 (685)
+| |+|++|++++. ++.|++||+.+++....+..+. .+..++|+|+|+++++++.||.++||.+. +++
T Consensus 293 ~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~- 370 (741)
T 2ecf_A 293 NW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK- 370 (741)
T ss_dssp EE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-
T ss_pred Ee-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-
Confidence 99 99999987764 5689999999998777665442 45689999999999999999987887765 445
Q ss_pred EEEEecCCCCeEEE-EEcCCCCEEEE-EeCCC--cEEEEEcCC-CceeeEEeeccceEEEEEcCCCCeEEEEEeCC---C
Q 005656 328 VRKFEGHTDRITDF-CFSEDGKWLLS-SGMDG--SLRIWDVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQ---N 399 (685)
Q Consensus 328 ~~~~~~h~~~I~~l-~~spdg~~l~s-~s~Dg--~I~iwd~~~-~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~---~ 399 (685)
...+..|...|..+ .|+|||++|+. ++.++ .+++|++.. +.....+.....+.+++|||||++|+....+. .
T Consensus 371 ~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~ 450 (741)
T 2ecf_A 371 AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPP 450 (741)
T ss_dssp EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCC
Confidence 78888888889887 59999997764 44555 899999874 66566666656689999999999998886653 2
Q ss_pred eEEEEEc
Q 005656 400 GVYLWVN 406 (685)
Q Consensus 400 ~I~lW~~ 406 (685)
.+++|+.
T Consensus 451 ~~~l~~~ 457 (741)
T 2ecf_A 451 QIELFRA 457 (741)
T ss_dssp EEEEEET
T ss_pred eEEEEEc
Confidence 5788874
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=2.8e-27 Score=279.36 Aligned_cols=364 Identities=13% Similarity=0.041 Sum_probs=266.3
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCC------CcEEEEeCCCCeeeEEeecccccCe-------eEEEEeCCCcEEEEecCC
Q 005656 1 MRGAVTALAFSSDGQPLLASGASS------GVISIWNLEKRRLQSVIREAHDNAI-------ISLHFFANEPVLMSASAD 67 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~d------g~I~vwd~~~~~~~~~~~~~h~~~V-------~~l~~sp~~~~l~s~s~D 67 (685)
|.+.|.+++|||||+ .||+++.+ +.|++||+.+++. ..+. .|...+ .+++|+|||+++++++.+
T Consensus 51 ~~~~v~~~~~SPDG~-~la~~s~~~~~~~~~~i~~~d~~~g~~-~~lt-~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~ 127 (1045)
T 1k32_A 51 NLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYFYNGENGEI-KRIT-YFSGKSTGRRMFTDVAGFDPDGNLIISTDAM 127 (1045)
T ss_dssp SSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEEEETTTTEE-EECC-CCCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred CCCcccCeEECCCCC-EEEEEEeeccCCCCCeEEEEECCCCCe-EEcc-cCCCcccccccccccccCCCCCEEEEEECCc
Confidence 678899999999999 77776533 4799999998874 4555 788888 999999999988887755
Q ss_pred ----C--cEEEEEecCCCCCC---------------------------------------------ceeEecccCCCCCe
Q 005656 68 ----N--SIKMWIFDTTDGDP---------------------------------------------RLLRFRSGHSAPPL 96 (685)
Q Consensus 68 ----~--~v~iWd~~~~~~~~---------------------------------------------~~~~~~~~h~~~v~ 96 (685)
+ .|.+|++..+.... .....+.+|...+.
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~ 207 (1045)
T 1k32_A 128 QPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVS 207 (1045)
T ss_dssp SSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCE
T ss_pred CCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCccc
Confidence 3 45566554331000 01122346788888
Q ss_pred EEEEecCCCEEEEEeCCCceEEEEeecC-ceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEc
Q 005656 97 CIRFYANGRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 175 (685)
Q Consensus 97 ~i~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (685)
++.|+++ ..+++++.|+.+++|.+... .....+... .......++ .+...++..
T Consensus 208 ~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~----------------~~~~~~~~S------pDG~~la~~-- 262 (1045)
T 1k32_A 208 SPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSF----------------TDYYPRHLN------TDGRRILFS-- 262 (1045)
T ss_dssp EEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCC----------------CSSCEEEEE------ESSSCEEEE--
T ss_pred ceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCC----------------CCcceeeEc------CCCCEEEEE--
Confidence 9999888 66677788899999987642 222222110 000111222 233444444
Q ss_pred CCceEEEEEcCccccCceeecCCC--------CCCCCeEEEEEc-cCCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656 176 DTAQAYVWRLQNFVLGEHILRPCP--------ENPTAVKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER 246 (685)
Q Consensus 176 ~~~~~~~w~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s-~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~ 246 (685)
..+.+++|+....... .+.... .+...+.+++|+ |+|+++++++ ++.|++|++..+......
T Consensus 263 ~~~~i~~~d~~~~~l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~------ 333 (1045)
T 1k32_A 263 KGGSIYIFNPDTEKIE--KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVP------ 333 (1045)
T ss_dssp ETTEEEEECTTTCCEE--ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECS------
T ss_pred eCCEEEEecCCceEee--eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEcc------
Confidence 3678899987332221 111000 022368899999 9999999887 889999999887654321
Q ss_pred ccCCCCc-CEEEEEEcCCCCEEEEEECCCeEE-EEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656 247 SNYAHNG-EVVGVACDSTNTLMISAGYHGDIK-VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 247 ~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 324 (685)
.|.. .+..++|+ +|+.+++++.++.+. +||+.+++......+...+..++|+|+|++|++++.++.|++||+.+
T Consensus 334 ---~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t 409 (1045)
T 1k32_A 334 ---EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 409 (1045)
T ss_dssp ---CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ---CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence 5666 89999999 999999999888899 99998877655544447889999999999999999999999999999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCC----------cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEE
Q 005656 325 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG----------SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATA 394 (685)
Q Consensus 325 ~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg----------~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~ 394 (685)
++....+.+|.+.+.+++|||||++|++++.++ .|++||+.+++......+...+.+++|+|||++|+++
T Consensus 410 g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 410 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL 489 (1045)
T ss_dssp CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEE
Confidence 998888888999999999999999999887654 8999999988743333344458899999999999999
Q ss_pred EeCCCeEEEEEc
Q 005656 395 HVDQNGVYLWVN 406 (685)
Q Consensus 395 ~~d~~~I~lW~~ 406 (685)
+.++ ...+|+.
T Consensus 490 s~~~-~~~~~~~ 500 (1045)
T 1k32_A 490 SYRS-LDPSPDR 500 (1045)
T ss_dssp ESCC-CCCEECS
T ss_pred eccc-CCcCcch
Confidence 8775 6777764
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=7.7e-28 Score=237.17 Aligned_cols=221 Identities=14% Similarity=0.018 Sum_probs=161.9
Q ss_pred cccCeeEEEEeCC----CcEEEEecCCCcEEEEEecCCCCCCceeEe-cccCCCCCeEEEEecCCCEEEEEeCCCceEEE
Q 005656 45 HDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 119 (685)
Q Consensus 45 h~~~V~~l~~sp~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vw 119 (685)
|...|++++|+|| ++++++++.+ +++|++..+ +++.. ..+|...|..++|+|+|+.+.+..
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g----~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-------- 175 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKR----RLVSSSGTLSDQQVEVMTFAEDGGGKENQF-------- 175 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTT----EEEEEESSSTTCEEEEEEECTTSCEEEEEE--------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCC----cEEEecccCCCCcEEEEEECCCCceeeeec--------
Confidence 5568999999999 9999998844 888977543 44444 355666666666666655444211
Q ss_pred EeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656 120 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 199 (685)
Q Consensus 120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 199 (685)
T Consensus 176 -------------------------------------------------------------------------------- 175 (356)
T 2w18_A 176 -------------------------------------------------------------------------------- 175 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCeEEEEEcc---CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE---------
Q 005656 200 ENPTAVKACTISA---CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM--------- 267 (685)
Q Consensus 200 ~~~~~v~~~~~s~---~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l--------- 267 (685)
.+...++.++|++ ++..+++|+.|++|++||+.+|+....+.. ...+...+.+++|+|+|.++
T Consensus 176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g-----~~~~v~~v~~vafSpdG~~lvs~s~~~~~ 250 (356)
T 2w18_A 176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI-----DDSYQASVCHKAYSEMGLLFIVLSHPCAK 250 (356)
T ss_dssp ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CC---CCCEEEEEEETTEEEEEEC-----
T ss_pred cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC-----CCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence 3456677888888 779999999999999999999998887741 00123478888999999876
Q ss_pred ---EEEECCCeEEEEECCCCceEEEee----cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeE-
Q 005656 268 ---ISAGYHGDIKVWDFKGRDLKSRWE----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT- 339 (685)
Q Consensus 268 ---~s~s~dg~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~- 339 (685)
++|+.|++|++||..+++.+..+. .+.....+..+.++.++++++.|++|+|||+.+++++.++.+|...+.
T Consensus 251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs 330 (356)
T 2w18_A 251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS 330 (356)
T ss_dssp -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence 567889999999999998876552 111111233444478999999999999999999999999999987655
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 340 DFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 340 ~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
.++|||||++|++|+.|++|+|||+
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEecC
Confidence 6899999999999999999999995
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=1e-25 Score=265.97 Aligned_cols=386 Identities=9% Similarity=-0.007 Sum_probs=262.4
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC------CcEEEEEe
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD------NSIKMWIF 75 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D------~~v~iWd~ 75 (685)
.+.+.+.+||| + .||.++. +.|++|++.+++.. .+. +|.+.+.+++|||||++|++++.+ ..|++|++
T Consensus 14 ~~~~~~~~~S~--~-~iaf~~~-~~l~~~~~~gg~~~-~lt-~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~ 87 (1045)
T 1k32_A 14 PNLLLNPDIHG--D-RIIFVCC-DDLWEHDLKSGSTR-KIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG 87 (1045)
T ss_dssp CCCCEEEEEET--T-EEEEEET-TEEEEEETTTCCEE-EEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred cceEeCcEEeC--C-EEEEEEC-CcEEEEECCCCcEE-Eee-eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEEC
Confidence 46788999996 4 5666654 78999999888754 444 799999999999999999988643 37888887
Q ss_pred cCCCCCCceeEecccCCCCC-------eEEEEecCCCEEEEEeCC----C--ceEEEEeecCceeeEechhhHHHHH---
Q 005656 76 DTTDGDPRLLRFRSGHSAPP-------LCIRFYANGRHILSAGQD----R--AFRLFSVIQDQQSRELSQRHVAKRA--- 139 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~h~~~v-------~~i~~~~~~~~l~s~s~d----g--~i~vwd~~~~~~~~~~~~~~~~~~~--- 139 (685)
..+ . ...+..|...+ ..++|+|||+.+++++.+ + .|.+|++.++.... +.........
T Consensus 88 ~~g----~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~~~~~~sp 161 (1045)
T 1k32_A 88 ENG----E-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLGPATHILFAD 161 (1045)
T ss_dssp TTT----E-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSCSCSEEEEET
T ss_pred CCC----C-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCCCcceeeeCC
Confidence 654 2 45567788777 899999999977777654 3 46777776654322 2111000000
Q ss_pred hhcccc--------------c--ccccc----Cceeeeec--cccccc--CCcceEEEEcCCceEEEEEcCccccCceee
Q 005656 140 RKLKMK--------------E--EELKL----KPVIAFDC--AEIRER--DWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 195 (685)
Q Consensus 140 ~~~~~~--------------~--~~~~~----~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 195 (685)
..+... . ..+-. .....+.. ...... ..+.++.....++...+|.+.........+
T Consensus 162 G~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l 241 (1045)
T 1k32_A 162 GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKH 241 (1045)
T ss_dssp TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEEC
T ss_pred CEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEe
Confidence 000000 0 00000 00000000 000000 012455555556677777765322111222
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc---ccccCCCCcCEEEEEEc-CCCCEEEEEE
Q 005656 196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS---ERSNYAHNGEVVGVACD-STNTLMISAG 271 (685)
Q Consensus 196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~~-~~~~~l~s~s 271 (685)
. .+ ..+...+|+|+|++++++ .++.|++||+..+... .+.... ......|...+.+++|+ |+|+.+++++
T Consensus 242 ~---~~-~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~ 315 (1045)
T 1k32_A 242 T---SF-TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS 315 (1045)
T ss_dssp C---CC-CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE
T ss_pred c---CC-CCcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE
Confidence 1 22 245677999999999888 5899999999544332 221100 00001245578999999 9999998887
Q ss_pred CCCeEEEEECCCCceEEEeecCC-ceeEEEEeecCCEEEEEeCCCeEE-EEEcCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 005656 272 YHGDIKVWDFKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVADDLVIR-LFDVVALRMVRKFEGHTDRITDFCFSEDGKW 349 (685)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~I~-i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~ 349 (685)
++.|.+|+..++.......+.. .+..++|+ +|+.+++++.++.+. +||+.+++... +.+|...+..++|||||++
T Consensus 316 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~ 392 (1045)
T 1k32_A 316 -RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKF 392 (1045)
T ss_dssp -TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSE
T ss_pred -cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCE
Confidence 7899999999887665444455 78999999 999999999888999 99998876544 4488889999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeEEeec-cceEEEEEcCCCCeEEEEEeCC---------CeEEEEEcCC
Q 005656 350 LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQ---------NGVYLWVNRC 408 (685)
Q Consensus 350 l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg~~Lat~~~d~---------~~I~lW~~~~ 408 (685)
|++++.++.|++||+.+++.......+ ..+.+++|||||++|++++.++ ..|++|+...
T Consensus 393 la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 393 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred EEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 999999999999999999988777544 4489999999999999988754 4899998653
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1.9e-25 Score=229.43 Aligned_cols=300 Identities=11% Similarity=0.132 Sum_probs=211.1
Q ss_pred EEEEEeCCCcEEEEeCC-CCe--eeEEeecccccCeeEEEEeCCCcEEEEecCC-CcEEEEEecCCCCCCceeEecccCC
Q 005656 17 LLASGASSGVISIWNLE-KRR--LQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHS 92 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~-~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D-~~v~iWd~~~~~~~~~~~~~~~~h~ 92 (685)
++++++.++.|.+||+. ++. .+..+ .|...+.+++|+|++++|++++.+ +.|++|+++...+..+.+.....+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 55565789999999995 343 33333 578889999999999988888776 9999999984444434444444444
Q ss_pred CCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656 93 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 171 (685)
Q Consensus 93 ~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (685)
.+.+++|+|+|+++++++. ++.|.+||+..+........
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------------------------------------- 124 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV--------------------------------------- 124 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE---------------------------------------
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc---------------------------------------
Confidence 7899999999998877765 88899999952221111100
Q ss_pred EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCC-CccccccccccccccC
Q 005656 172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQS-GISRGSYLDMSERSNY 249 (685)
Q Consensus 172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~-~~~~~~~~~~~~~~~~ 249 (685)
. .....+.+++|+|+|+++++++ .++.|.+||+.+ +........ ....
T Consensus 125 -----------------------~----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~ 174 (343)
T 1ri6_A 125 -----------------------V----EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA---EVTT 174 (343)
T ss_dssp -----------------------E----CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---EEEC
T ss_pred -----------------------c----cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc---cccc
Confidence 0 1233477889999999888887 889999999987 543221100 0011
Q ss_pred CCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCC--Cce--EEEee---c----CCceeEEEEeecCCEEEEE-eCCCe
Q 005656 250 AHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG--RDL--KSRWE---V----GCSLVKIVYHRVNGLLATV-ADDLV 316 (685)
Q Consensus 250 ~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~--~~~--~~~~~---~----~~~i~~~~~~~~~~~l~~~-~~dg~ 316 (685)
.....+.+++|+|+++++++++ .++.|.+|++.. ++. ..... . ...+..++|+|++++|+++ ..++.
T Consensus 175 ~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 175 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE
Confidence 2345788999999999776655 789999999953 433 22222 1 1346689999999977754 47899
Q ss_pred EEEEEcC----CCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC--CCce--eeEEeeccceEEEEEcCC
Q 005656 317 IRLFDVV----ALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVI--LARQ--IDAIHVDVSITALSLSPN 387 (685)
Q Consensus 317 I~i~d~~----~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~--~~~~--i~~~~~~~~v~~v~~spd 387 (685)
|.+||+. +.+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|++. +++. +..+.......+++|.|+
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH 333 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEE
T ss_pred EEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcc
Confidence 9999998 3455666665554 89999999999988887 68999999554 5643 444445455778888775
Q ss_pred CC
Q 005656 388 MD 389 (685)
Q Consensus 388 g~ 389 (685)
.+
T Consensus 334 ~~ 335 (343)
T 1ri6_A 334 EG 335 (343)
T ss_dssp C-
T ss_pred cC
Confidence 43
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=4.1e-26 Score=248.11 Aligned_cols=294 Identities=10% Similarity=0.025 Sum_probs=229.3
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeC--CCCeeeEEeecccccCeeEEEEeC----CCcEEEEecC-CCcEEEEEecC
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFA----NEPVLMSASA-DNSIKMWIFDT 77 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp----~~~~l~s~s~-D~~v~iWd~~~ 77 (685)
+.+++|+|||+ +|++++.|+.|.+||+ .+++.+..+. +...+.+++|+| ||++|++++. +++|.+||..+
T Consensus 181 ~~~v~~spdg~-~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 181 VHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp EEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred cceEEECCCCC-EEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 78999999999 8999999999999999 8899888887 455689999999 9999998885 89999999876
Q ss_pred CCCCCceeEeccc----------CCC-CCeEEEEecCCCE-EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 78 TDGDPRLLRFRSG----------HSA-PPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 78 ~~~~~~~~~~~~~----------h~~-~v~~i~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
. +++..+.. |.. .+.++.++|++.. +++...++.|.+||+.+.+......
T Consensus 258 ~----~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~-------------- 319 (543)
T 1nir_A 258 L----EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS-------------- 319 (543)
T ss_dssp C----CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEE--------------
T ss_pred c----ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEE--------------
Confidence 5 44544432 223 6889999997654 5566778999999987654322100
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCC
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGG 224 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg 224 (685)
+ .....+..++|+|+|++++++. .++
T Consensus 320 -------------------------------------------------i----~~~~~~~~~~~spdg~~l~va~~~~~ 346 (543)
T 1nir_A 320 -------------------------------------------------I----GAAPFLHDGGWDSSHRYFMTAANNSN 346 (543)
T ss_dssp -------------------------------------------------E----ECCSSCCCEEECTTSCEEEEEEGGGT
T ss_pred -------------------------------------------------e----ccCcCccCceECCCCCEEEEEecCCC
Confidence 0 1233466789999999877665 588
Q ss_pred cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEE-CCCeEEEEECCC-------CceEEEeecC-C
Q 005656 225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAG-YHGDIKVWDFKG-------RDLKSRWEVG-C 294 (685)
Q Consensus 225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~~-~ 294 (685)
.|.+||+.+++....+.. ....|.+....+ ++|+ +..++++. .|++|.+||+.+ .+.++++..+ .
T Consensus 347 ~v~v~D~~tg~l~~~i~~----g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~ 421 (543)
T 1nir_A 347 KVAVIDSKDRRLSALVDV----GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG 421 (543)
T ss_dssp EEEEEETTTTEEEEEEEC----SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred eEEEEECCCCeEEEeecc----CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC
Confidence 999999999987766531 111465544444 4677 56666665 589999999998 7888888865 5
Q ss_pred ceeEEEEeecCCEEEEEe-------CCCeEEEEEcCCCeeE-EEE--------ecCCCCeEEEEEcCCCCEEEEEe----
Q 005656 295 SLVKIVYHRVNGLLATVA-------DDLVIRLFDVVALRMV-RKF--------EGHTDRITDFCFSEDGKWLLSSG---- 354 (685)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~-------~dg~I~i~d~~~~~~~-~~~--------~~h~~~I~~l~~spdg~~l~s~s---- 354 (685)
.+..+.++|++++|++++ .+++|.+||+.+++.. ..+ ..+...+..+.|+|||++|+++.
T Consensus 422 ~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~ 501 (543)
T 1nir_A 422 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK 501 (543)
T ss_dssp CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCT
T ss_pred CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCC
Confidence 678899999999999987 2679999999998876 444 35677899999999999988663
Q ss_pred -CCCcEEEEEcCCCceeeEEeecc
Q 005656 355 -MDGSLRIWDVILARQIDAIHVDV 377 (685)
Q Consensus 355 -~Dg~I~iwd~~~~~~i~~~~~~~ 377 (685)
.|+.|.|||..+++++..++...
T Consensus 502 ~~~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 502 NDSSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp TSCCEEEEEETTTTEEEEEECCTT
T ss_pred CCCCeEEEEECCCceEEEeecCCC
Confidence 47999999999999999887543
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=1.7e-25 Score=228.83 Aligned_cols=282 Identities=9% Similarity=0.065 Sum_probs=209.8
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC-CCcEEEEEecCCCCCCce-e
Q 005656 8 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRL-L 85 (685)
Q Consensus 8 l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~~v~iWd~~~~~~~~~~-~ 85 (685)
..|.+++..++++++.++.|.+||..+++....+. .+...+ +++|+|+++++++++. ++.|.+||..++ +. .
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~----~~~~ 76 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE----PPKV 76 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS----SCEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC----ceeE
Confidence 45777777578888899999999999999988887 556666 9999999996665554 889999998876 33 5
Q ss_pred EecccCCCCCeEEEEecCCCEEEEEeCCC---ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 86 RFRSGHSAPPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 86 ~~~~~h~~~v~~i~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
.....+..+..+++|+|+|++++++..++ .|.+||+.+++....+.
T Consensus 77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~------------------------------- 125 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP------------------------------- 125 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-------------------------------
T ss_pred EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-------------------------------
Confidence 55556666666699999999999555553 89999998776544432
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCc-EEEEECCCCcccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGW-IERFNLQSGISRGSY 240 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~-i~~~d~~~~~~~~~~ 240 (685)
......+++|+|+|++++++ ..++. |.+|++.........
T Consensus 126 --------------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 126 --------------------------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp --------------------------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred --------------------------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 13346899999999866655 45588 999998864432211
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCce---EEEeecCCceeEEEEeecCCEEEEEe-CCC
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDL---KSRWEVGCSLVKIVYHRVNGLLATVA-DDL 315 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg 315 (685)
.. ....+...+.+++|+|+|+++++++ .++.|.+||+.+++. +..+..+..+..++|+|+|+++++++ .++
T Consensus 168 ~~----~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 243 (331)
T 3u4y_A 168 GQ----EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTV 243 (331)
T ss_dssp EE----EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEE
T ss_pred CC----ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCC
Confidence 10 0113345689999999999665554 689999999999988 77888788889999999999776665 578
Q ss_pred eEEEEEcCCCee--EEEEecC----CC---CeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCc
Q 005656 316 VIRLFDVVALRM--VRKFEGH----TD---RITDFCFSEDGKWLLSSG-MDGSLRIWDVILAR 368 (685)
Q Consensus 316 ~I~i~d~~~~~~--~~~~~~h----~~---~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~ 368 (685)
.|.+||+.+++. +..+..+ .. ....++|+|||++|++++ .++.|.+||+....
T Consensus 244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 899999999877 5544433 22 235689999999887655 56799999998654
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=8.4e-26 Score=256.25 Aligned_cols=328 Identities=9% Similarity=0.054 Sum_probs=230.8
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee-EEeecccc-----------------cCeeEEEEeCCCcEEEEecC
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-SVIREAHD-----------------NAIISLHFFANEPVLMSASA 66 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~-~~~~~~h~-----------------~~V~~l~~sp~~~~l~s~s~ 66 (685)
+..+.|. |. .+++++.+| | +||+.+++.+ ..+. .|. ..|.+++|+|| +.++.+ .
T Consensus 28 ~~~~~w~--g~-~~~~~~~~~-i-~~d~~tg~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~ 99 (706)
T 2z3z_A 28 VVGLQWM--GD-NYVFIEGDD-L-VFNKANGKSAQTTRF-SAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-T 99 (706)
T ss_dssp CTTCEEE--TT-EEEEEETTE-E-EEEC-------CEEE-EHHHHHTTC-----------CCCEEEEETTT-TEEEEE-E
T ss_pred CCCCcCc--CC-eEEEEeCCc-E-EEECCCCcEeeEEee-chhHhhhhccchhccccccccCceeEEECCC-CeEEEE-E
Confidence 3446777 55 456666677 8 9999999873 3443 333 56999999999 555544 3
Q ss_pred CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec-----CceeeEechhhHHHHHhh
Q 005656 67 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ-----DQQSRELSQRHVAKRARK 141 (685)
Q Consensus 67 D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~ 141 (685)
++.|++||+.++ +.. .+..+...+.+++|+|||++|+++ .|+.|++|++.+ ++..........
T Consensus 100 ~~~i~~~d~~~~----~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~------ 167 (706)
T 2z3z_A 100 QGGLVGFDMLAR----KVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE------ 167 (706)
T ss_dssp TTEEEEEETTTT----EEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT------
T ss_pred CCEEEEEECCCC----ceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC------
Confidence 599999998765 332 334567789999999999999985 689999999987 543322110000
Q ss_pred ccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 005656 142 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 221 (685)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 221 (685)
. + .+... ........+.+++|||||++|++++
T Consensus 168 ---------------------------~-~----------~~g~~----------~~~ee~~~~~~~~~SpDg~~la~~~ 199 (706)
T 2z3z_A 168 ---------------------------T-L----------VYGQA----------VHQREFGIEKGTFWSPKGSCLAFYR 199 (706)
T ss_dssp ---------------------------T-E----------EESSC----------CGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred ---------------------------C-e----------Ecccc----------hhhhhcCCCceEEECCCCCEEEEEE
Confidence 0 0 00000 0001234467899999999999987
Q ss_pred ---------------------------------cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE
Q 005656 222 ---------------------------------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI 268 (685)
Q Consensus 222 ---------------------------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 268 (685)
.++.|++||+.++....... ...|...+.+++|+|+|+.|+
T Consensus 200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT------GEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC------CSCTTCEEEEEEECTTSSEEE
T ss_pred ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc------CCCCceeEeeEEEECCCCEEE
Confidence 44679999999887543321 125677899999999999999
Q ss_pred EEECCC-----eEEEEECCCC-ceEEEeec--CC---ceeEEEEee--cCCEEEEEeCCCeEEEEEcC-CCeeEEEEecC
Q 005656 269 SAGYHG-----DIKVWDFKGR-DLKSRWEV--GC---SLVKIVYHR--VNGLLATVADDLVIRLFDVV-ALRMVRKFEGH 334 (685)
Q Consensus 269 s~s~dg-----~i~iwd~~~~-~~~~~~~~--~~---~i~~~~~~~--~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h 334 (685)
+++.++ .|++||+.++ ........ .. .+..+.|+| +|++++++..|+.++||++. +++.+..+..|
T Consensus 274 ~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~ 353 (706)
T 2z3z_A 274 VAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG 353 (706)
T ss_dssp EEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred EEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence 988775 8999999998 43333322 11 246789999 99999999999999999887 67778888888
Q ss_pred CCCeEE-EEEcCCCCEEEEEeC-CC----cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC---CeEEEEE
Q 005656 335 TDRITD-FCFSEDGKWLLSSGM-DG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ---NGVYLWV 405 (685)
Q Consensus 335 ~~~I~~-l~~spdg~~l~s~s~-Dg----~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~---~~I~lW~ 405 (685)
...+.. ++|+|||++|+.++. ++ .|..||+.+++ ...+.....+.+++|||||++++.++.+. ..|++|+
T Consensus 354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 888887 799999998876654 44 67777777765 44445555699999999999998886653 3699998
Q ss_pred cC
Q 005656 406 NR 407 (685)
Q Consensus 406 ~~ 407 (685)
..
T Consensus 433 ~~ 434 (706)
T 2z3z_A 433 IG 434 (706)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=1e-26 Score=264.69 Aligned_cols=336 Identities=11% Similarity=0.070 Sum_probs=230.8
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeeccccc---CeeEEEEeCCCcEEEEecCC---------CcEE
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN---AIISLHFFANEPVLMSASAD---------NSIK 71 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~s~D---------~~v~ 71 (685)
.+.+++|+|||+ ++++ +.||.|++||+.+++....+. +|.. .|.+++|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 467889999999 7776 689999999999998887776 6665 49999999999999998764 6788
Q ss_pred EEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656 72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 151 (685)
Q Consensus 72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (685)
+||++++.. +.+....+|...+..++|+|||+.|++++. +.|++|++.+++..........
T Consensus 95 ~~d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~---------------- 155 (723)
T 1xfd_A 95 LSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE---------------- 155 (723)
T ss_dssp EEESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT----------------
T ss_pred EEECCCCce--EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC----------------
Confidence 999887632 334444456667999999999999999886 7899999987665433211000
Q ss_pred CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-------
Q 005656 152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG------- 224 (685)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg------- 224 (685)
.++..+.. -|-.. + .....+.+++|||||++|++++.++
T Consensus 156 -----------------~~~~~g~~-----~~v~~-----e-------e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~ 201 (723)
T 1xfd_A 156 -----------------GVIYNGLS-----DWLYE-----E-------EILKTHIAHWWSPDGTRLAYAAINDSRVPIME 201 (723)
T ss_dssp -----------------TTEEEEEC-----CHHHH-----H-------TTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred -----------------CceECccc-----ceeEE-----E-------EeccCcceEEECCCCCEEEEEEECCCccceEE
Confidence 00000000 00000 0 0112457888999999888876543
Q ss_pred ---------------------------cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC----C
Q 005656 225 ---------------------------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY----H 273 (685)
Q Consensus 225 ---------------------------~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~----d 273 (685)
.|++||+.++.....+.... ....+...+..++|+|+|+++++.+. +
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD--DPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC--CGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc--cCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 79999998887543332100 01134678999999999998877653 3
Q ss_pred CeEEEEECCCCceEEEeecC--Cce----eEEEEeecCCEEEE--EeCCC------eEEEEE-cCCCe--eEEEEecCCC
Q 005656 274 GDIKVWDFKGRDLKSRWEVG--CSL----VKIVYHRVNGLLAT--VADDL------VIRLFD-VVALR--MVRKFEGHTD 336 (685)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~--~~i----~~~~~~~~~~~l~~--~~~dg------~I~i~d-~~~~~--~~~~~~~h~~ 336 (685)
..|++||+.+++....+... ..+ ..++|+|+|+.|+. +..++ .|++|| ..+++ +...+..+..
T Consensus 280 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 359 (723)
T 1xfd_A 280 SILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDW 359 (723)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSS
T ss_pred EEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCe
Confidence 57999999998876655332 333 37899999996664 45566 577777 34444 1455554444
Q ss_pred CeEE-EEEcCCCCEEEEEeCC---CcEEEEEcCCCc--eeeEEee----ccceEEEEEcCCCCeEEEEEeC
Q 005656 337 RITD-FCFSEDGKWLLSSGMD---GSLRIWDVILAR--QIDAIHV----DVSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 337 ~I~~-l~~spdg~~l~s~s~D---g~I~iwd~~~~~--~i~~~~~----~~~v~~v~~spdg~~Lat~~~d 397 (685)
.+.. ++|+|||++|+..+.+ +.+++|++.... ....+.. ...+..++|||||++|+.....
T Consensus 360 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 360 DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence 5554 6999999999876655 789999987532 3333332 3348899999999999887654
No 137
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=3.4e-26 Score=241.32 Aligned_cols=278 Identities=12% Similarity=0.019 Sum_probs=215.7
Q ss_pred ccCeeEEEEeCCCc-EEEEec----CCC----cEEEEEe--cCCCCCCcee--EecccCCCCCeEEEEec----------
Q 005656 46 DNAIISLHFFANEP-VLMSAS----ADN----SIKMWIF--DTTDGDPRLL--RFRSGHSAPPLCIRFYA---------- 102 (685)
Q Consensus 46 ~~~V~~l~~sp~~~-~l~s~s----~D~----~v~iWd~--~~~~~~~~~~--~~~~~h~~~v~~i~~~~---------- 102 (685)
...+....|.+.+. ++++|+ .|| ++++||+ .++ +.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g 137 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG----TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTG 137 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT----CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHS
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC----CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcC
Confidence 34677888888775 666775 467 8999999 665 333 45678888888777764
Q ss_pred ----CCCEEEEEeCC------CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656 103 ----NGRHILSAGQD------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 172 (685)
Q Consensus 103 ----~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (685)
.+..++.++.+ +.|++||+.... ...+.
T Consensus 138 ~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~----------------------------------------- 175 (415)
T 2hqs_A 138 IKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH----------------------------------------- 175 (415)
T ss_dssp SCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE-----------------------------------------
T ss_pred CCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEe-----------------------------------------
Confidence 15566666654 789999986432 22221
Q ss_pred EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC---cEEEEECCCCccccccccccccccC
Q 005656 173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG---WIERFNLQSGISRGSYLDMSERSNY 249 (685)
Q Consensus 173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~ 249 (685)
.+...+.+++|+|+|+++++++.++ .|++||+.+++.....
T Consensus 176 ---------------------------~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~--------- 219 (415)
T 2hqs_A 176 ---------------------------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------- 219 (415)
T ss_dssp ---------------------------EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---------
T ss_pred ---------------------------CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee---------
Confidence 3456799999999999999998875 9999999998765322
Q ss_pred CCCcCEEEEEEcCCCCEEE-EEECCCe--EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcC
Q 005656 250 AHNGEVVGVACDSTNTLMI-SAGYHGD--IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DL--VIRLFDVV 323 (685)
Q Consensus 250 ~h~~~v~~l~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~I~i~d~~ 323 (685)
.|.+.+.+++|+|+|+.|+ +++.++. |++||+.+++......+...+.+++|+|+|+.|++++. ++ .|++||+.
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 6778999999999999887 5665554 99999999887655556678999999999998888876 44 78888998
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCC-
Q 005656 324 ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN- 399 (685)
Q Consensus 324 ~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D---g~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~- 399 (685)
+++. ..+..|...+.+++|+|||++|++++.+ +.|++||+.+++.. .+..+..+.+++|+|+|++|++++.+++
T Consensus 300 ~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~~ 377 (415)
T 2hqs_A 300 GGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMG 377 (415)
T ss_dssp SSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTE
T ss_pred CCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCCc
Confidence 8874 4456677889999999999999988764 58999999998874 3444447999999999999999998875
Q ss_pred -eEEEEEcC
Q 005656 400 -GVYLWVNR 407 (685)
Q Consensus 400 -~I~lW~~~ 407 (685)
.|++|+..
T Consensus 378 ~~l~~~d~~ 386 (415)
T 2hqs_A 378 SVLNLVSTD 386 (415)
T ss_dssp EEEEEEETT
T ss_pred cEEEEEECC
Confidence 68888753
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=8.3e-24 Score=218.22 Aligned_cols=269 Identities=11% Similarity=0.092 Sum_probs=206.3
Q ss_pred CcEEEEEEccCCCCEEEEEeC-------CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEE
Q 005656 3 GAVTALAFSSDGQPLLASGAS-------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWI 74 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~-------dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd 74 (685)
+.+..++|+|+|+ .+++++. ++.|.+||..+++....+. ....+.+++|+|+++++ ++...++.|.+||
T Consensus 41 ~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 41 KGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp SSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4578999999998 5666553 5689999999999888886 34558899999999854 5556689999999
Q ss_pred ecCCCCCCceeEecccCCCC---------CeEEEEecCCCEEEEEe--CCCceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656 75 FDTTDGDPRLLRFRSGHSAP---------PLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 143 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~---------v~~i~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 143 (685)
..++ +.+..+..+... +.+++|+|+|+++++++ .++.|.+||..+++....+.
T Consensus 118 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~------------ 181 (353)
T 3vgz_A 118 AKTG----EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ------------ 181 (353)
T ss_dssp TTTC----CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC------------
T ss_pred CCCC----eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec------------
Confidence 8776 444444333221 57788888888777665 36677777765443322210
Q ss_pred ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 005656 144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223 (685)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 223 (685)
T Consensus 182 -------------------------------------------------------------------------------- 181 (353)
T 3vgz_A 182 -------------------------------------------------------------------------------- 181 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-----CCceeE
Q 005656 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-----GCSLVK 298 (685)
Q Consensus 224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~i~~ 298 (685)
.+...+.+++|+|+++++++++.++.|.+||..+++....+.. ...+..
T Consensus 182 --------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 235 (353)
T 3vgz_A 182 --------------------------NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN 235 (353)
T ss_dssp --------------------------CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEE
T ss_pred --------------------------CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccce
Confidence 1223355678888888888888888899999888887777664 245778
Q ss_pred EEEeecCCEEEEEeC-CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeEEeec
Q 005656 299 IVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVD 376 (685)
Q Consensus 299 ~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~~~ 376 (685)
++|+|+++++++++. ++.|.+||+.+++.+..+..+. ...++|+|+|++++.++ .++.|.+||+.+++.+..+...
T Consensus 236 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 313 (353)
T 3vgz_A 236 ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP 313 (353)
T ss_dssp EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence 999999997777665 4899999999999988887544 26799999999766555 7899999999999999999888
Q ss_pred cceEEEEEcCCCCeEEEEEeCC
Q 005656 377 VSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 377 ~~v~~v~~spdg~~Lat~~~d~ 398 (685)
..+.+++|+|+|++|++++.++
T Consensus 314 ~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCCeEEEcCCCCEEEEEEccc
Confidence 8899999999999888887764
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=4.3e-24 Score=218.41 Aligned_cols=273 Identities=8% Similarity=0.051 Sum_probs=202.8
Q ss_pred EEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCce-eeE
Q 005656 53 HFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQ-SRE 129 (685)
Q Consensus 53 ~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~-~~~ 129 (685)
.|.++++ .+++++.++.|.+||..++ +.......+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL----EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC----CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc----ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 4555554 5778888999999998876 4555544555666 9999999997777766 88999999987764 322
Q ss_pred echhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEE
Q 005656 130 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 209 (685)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (685)
+. .+..+..+++
T Consensus 79 ~~--------------------------------------------------------------------~~~~~~~~~~ 90 (331)
T 3u4y_A 79 IQ--------------------------------------------------------------------EGQSSMADVD 90 (331)
T ss_dssp EE--------------------------------------------------------------------ECSSCCCCEE
T ss_pred cc--------------------------------------------------------------------cCCCCccceE
Confidence 21 1223333489
Q ss_pred EccCCCEEEEEecCC---cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCCe-EEEEECCCC
Q 005656 210 ISACGNFAVLGTAGG---WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGD-IKVWDFKGR 284 (685)
Q Consensus 210 ~s~~g~~l~~g~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~-i~iwd~~~~ 284 (685)
|+|+|++++++..++ .|.+||+.++.....+ .+.....+++|+|+|++++++ ..++. |.+|++...
T Consensus 91 ~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~---------~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 91 ITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI---------PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp ECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE---------ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE---------ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 999999999666653 8999999998876655 334456899999999866555 55578 999998754
Q ss_pred ceE-----EEeecCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCee---EEEEecCCCCeEEEEEcCCCCEEEEEe-
Q 005656 285 DLK-----SRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRM---VRKFEGHTDRITDFCFSEDGKWLLSSG- 354 (685)
Q Consensus 285 ~~~-----~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~~spdg~~l~s~s- 354 (685)
..+ ..+........++|+|+|++++++ ..++.|++||+.+++. +..+..+ ..+..++|+|||++|+.++
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence 332 233345678999999999966555 4689999999999988 7777744 6678999999999877665
Q ss_pred CCCcEEEEEcCCCce--eeEEeec-----cc---eEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 355 MDGSLRIWDVILARQ--IDAIHVD-----VS---ITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 355 ~Dg~I~iwd~~~~~~--i~~~~~~-----~~---v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
.++.|.+||+.+++. +..+... .+ +.+++|+|||++|++++.+++.|++|+...
T Consensus 241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 578899999999887 4433322 11 356899999999999888878999999653
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=3e-24 Score=244.97 Aligned_cols=278 Identities=11% Similarity=0.069 Sum_probs=212.7
Q ss_pred ccCeeEEEEeCCCcEEEEecC-CC-----cEEEEEecCCCCCCceeEecccCC------------------------CCC
Q 005656 46 DNAIISLHFFANEPVLMSASA-DN-----SIKMWIFDTTDGDPRLLRFRSGHS------------------------APP 95 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~-D~-----~v~iWd~~~~~~~~~~~~~~~~h~------------------------~~v 95 (685)
...|.+++|+|||++|++++. |+ +|++||+.++ +.......+. ..|
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG----QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC----CEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC----ceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 457999999999999999998 88 8999998775 3333333332 238
Q ss_pred eEEEEecCCCEEEEEeCCCceEEEEeecCc--eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE
Q 005656 96 LCIRFYANGRHILSAGQDRAFRLFSVIQDQ--QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 173 (685)
Q Consensus 96 ~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (685)
.+++|+|||++|++++. +.|++||+.++. ....+
T Consensus 112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l------------------------------------------- 147 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL------------------------------------------- 147 (741)
T ss_dssp CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-------------------------------------------
T ss_pred ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-------------------------------------------
Confidence 89999999999999886 899999987652 11111
Q ss_pred EcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc
Q 005656 174 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 253 (685)
Q Consensus 174 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~ 253 (685)
..+...+..++|||+|+++++++. +.|++||+.++....... .+..
T Consensus 148 -------------------------~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~--------~~~~ 193 (741)
T 2ecf_A 148 -------------------------THGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTA--------DGST 193 (741)
T ss_dssp -------------------------CCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCC--------CCCS
T ss_pred -------------------------ccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEecc--------CCcc
Confidence 134567899999999999998874 689999999887654332 2222
Q ss_pred ----------------CEEEEEEcCCCCEEEEEECCC---------------------------------eEEEEECCC-
Q 005656 254 ----------------EVVGVACDSTNTLMISAGYHG---------------------------------DIKVWDFKG- 283 (685)
Q Consensus 254 ----------------~v~~l~~~~~~~~l~s~s~dg---------------------------------~i~iwd~~~- 283 (685)
.+.+++|+|+|++|++++.|+ .|++||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 247899999999999988765 889999988
Q ss_pred CceEEEe---ecCCceeEEEEeecCCEEEEEeC-----CCeEEEEEcCCCeeEEEEecCCC----CeEEEEEcCCCCEEE
Q 005656 284 RDLKSRW---EVGCSLVKIVYHRVNGLLATVAD-----DLVIRLFDVVALRMVRKFEGHTD----RITDFCFSEDGKWLL 351 (685)
Q Consensus 284 ~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-----dg~I~i~d~~~~~~~~~~~~h~~----~I~~l~~spdg~~l~ 351 (685)
++..... .+...+..++| |||+.|++++. +..|++||+.+++....+..|.. .+..++|+|||++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence 7765543 23467899999 99998887764 56899999999988877776553 456899999999999
Q ss_pred EEeCCCcEEEEEcC-CCceeeEEeec-cceEEE-EEcCCCCeEEEEEeCCC--eEEEEEcC
Q 005656 352 SSGMDGSLRIWDVI-LARQIDAIHVD-VSITAL-SLSPNMDVLATAHVDQN--GVYLWVNR 407 (685)
Q Consensus 352 s~s~Dg~I~iwd~~-~~~~i~~~~~~-~~v~~v-~~spdg~~Lat~~~d~~--~I~lW~~~ 407 (685)
+++.||.+++|.+. ++. ...+..+ ..+.++ .|+|+|+.|++++.+++ .++||...
T Consensus 353 ~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 353 SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 99999988888776 444 5555443 448777 59999998877766654 68899753
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=3.4e-24 Score=220.07 Aligned_cols=269 Identities=11% Similarity=0.152 Sum_probs=194.4
Q ss_pred EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC-CceEEEEee--cCceeeEechhhHH
Q 005656 60 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD-RAFRLFSVI--QDQQSRELSQRHVA 136 (685)
Q Consensus 60 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-g~i~vwd~~--~~~~~~~~~~~~~~ 136 (685)
++++++.|+.|++|+++. .+..+.+.. ..|...+.+++|+|+|++|++++.+ +.|++|++. ++.......
T Consensus 7 l~~~~~~~~~v~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~----- 79 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNH-EGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE----- 79 (343)
T ss_dssp EEEEEGGGTEEEEEEECT-TSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-----
T ss_pred EEEeCCCCCeEEEEEECC-CCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc-----
Confidence 445557899999999975 222233333 3577889999999999999998886 999999997 332211100
Q ss_pred HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656 137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 216 (685)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 216 (685)
. .....+..++|+|+|++
T Consensus 80 ----------------------------------------------------------~----~~~~~~~~~~~s~dg~~ 97 (343)
T 1ri6_A 80 ----------------------------------------------------------S----ALPGSLTHISTDHQGQF 97 (343)
T ss_dssp ----------------------------------------------------------E----ECSSCCSEEEECTTSSE
T ss_pred ----------------------------------------------------------c----ccCCCCcEEEEcCCCCE
Confidence 0 11225778999999998
Q ss_pred EEEEec-CCcEEEEECCCC---ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CceEEE-
Q 005656 217 AVLGTA-GGWIERFNLQSG---ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG-RDLKSR- 289 (685)
Q Consensus 217 l~~g~~-dg~i~~~d~~~~---~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~~~- 289 (685)
+++++. ++.|.+||+..+ .....+ .....+.+++|+|+++++++++ .++.|++||+.+ ++....
T Consensus 98 l~~~~~~~~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 98 VFVGSYNAGNVSVTRLEDGLPVGVVDVV---------EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEE---------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred EEEEecCCCeEEEEECCCCccccccccc---------cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence 877665 888999999533 222222 2334588999999999888887 899999999987 655321
Q ss_pred ---e--ecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCC--Cee--EEEEe----cC--CCCeEEEEEcCCCCEEEE-
Q 005656 290 ---W--EVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVA--LRM--VRKFE----GH--TDRITDFCFSEDGKWLLS- 352 (685)
Q Consensus 290 ---~--~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~--~~~--~~~~~----~h--~~~I~~l~~spdg~~l~s- 352 (685)
. .....+..++|+|+++++++++ .++.|.+||+.. ++. ...+. ++ ...+..++|+|+|++|++
T Consensus 169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~ 248 (343)
T 1ri6_A 169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 248 (343)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEE
Confidence 2 2335788899999999776554 789999999953 433 33333 11 235778999999998874
Q ss_pred EeCCCcEEEEEcC--C--CceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 353 SGMDGSLRIWDVI--L--ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 353 ~s~Dg~I~iwd~~--~--~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
+..++.|++||+. + .+.+..+..+..+.+++|+|+|++|++++.+++.|.+|+.
T Consensus 249 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 249 DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp ETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred ecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 4578999999998 3 3455555555569999999999999999865569999964
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=6.5e-24 Score=212.70 Aligned_cols=254 Identities=9% Similarity=0.004 Sum_probs=193.7
Q ss_pred EEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC-CCCCCceeEecccC-CCCCeE
Q 005656 20 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-TDGDPRLLRFRSGH-SAPPLC 97 (685)
Q Consensus 20 tg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~~~~~h-~~~v~~ 97 (685)
.++.++.|++||+.+++..... .|...|.+++|+|++++|++++ ++.|++||+.. + +......+| ...+.+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~ 89 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP----SPEKVDTGFATICNND 89 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC----SCEECCCTTCCCBCSC
T ss_pred CCCcceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC----CceEeccccccccccc
Confidence 3467899999999999877544 5899999999999999999986 78999999887 5 334444455 477899
Q ss_pred EEEecCCCEEEEEe--CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEc
Q 005656 98 IRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 175 (685)
Q Consensus 98 i~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (685)
++|+|+|++|++++ .++..++|.+...
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~--------------------------------------------------- 118 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPST--------------------------------------------------- 118 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETT---------------------------------------------------
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECC---------------------------------------------------
Confidence 99999999999988 4456666665321
Q ss_pred CCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCE
Q 005656 176 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 255 (685)
Q Consensus 176 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v 255 (685)
++... .+ .+...+
T Consensus 119 ---------------------------------------------------------~~~~~-~~---------~~~~~~ 131 (297)
T 2ojh_A 119 ---------------------------------------------------------GGTPR-LM---------TKNLPS 131 (297)
T ss_dssp ---------------------------------------------------------CCCCE-EC---------CSSSSE
T ss_pred ---------------------------------------------------------CCceE-Ee---------ecCCCc
Confidence 11100 00 122237
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEEC--CCCceEEEeecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcC-CCeeEEE
Q 005656 256 VGVACDSTNTLMI-SAGYHGDIKVWDF--KGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVV-ALRMVRK 330 (685)
Q Consensus 256 ~~l~~~~~~~~l~-s~s~dg~i~iwd~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~-~~~~~~~ 330 (685)
..++|+|+++.++ +++.++.+++|++ .++.......+...+.+++|+|+++++++++ .++.+++|++. .+..+..
T Consensus 132 ~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~ 211 (297)
T 2ojh_A 132 YWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER 211 (297)
T ss_dssp EEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE
T ss_pred cceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE
Confidence 7788888888776 6677888888885 4455544445557899999999999887766 58899999986 5666778
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCceeeEEe--e-ccceEEEEEcCCCCeEEEEEe
Q 005656 331 FEGHTDRITDFCFSEDGKWLLSSGMD-----------GSLRIWDVILARQIDAIH--V-DVSITALSLSPNMDVLATAHV 396 (685)
Q Consensus 331 ~~~h~~~I~~l~~spdg~~l~s~s~D-----------g~I~iwd~~~~~~i~~~~--~-~~~v~~v~~spdg~~Lat~~~ 396 (685)
+..|...+..++|+|+|++|++++.+ +.|++||+.+++...... . ...+.+++|+|+|++|++++.
T Consensus 212 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 212 ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 88888889999999999999988765 569999999887644433 3 345999999999999999987
Q ss_pred CC
Q 005656 397 DQ 398 (685)
Q Consensus 397 d~ 398 (685)
+.
T Consensus 292 ~~ 293 (297)
T 2ojh_A 292 FP 293 (297)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=6.1e-24 Score=217.54 Aligned_cols=273 Identities=11% Similarity=0.071 Sum_probs=208.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeeccccc-CeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecc-cC--
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDN-AIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRS-GH-- 91 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~-~h-- 91 (685)
++++++.++.|.+||+.+++....+..++.. .+.+++|+|+++.+ ++++.++.|.+||+.++ +.+..+. ++
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~ 78 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG----ETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC----CEEEEEECCBTT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC----CeEeeEEcCCcc
Confidence 7889999999999999999998888633332 48899999999755 56667899999998765 3433322 22
Q ss_pred --CCCCeEEEEecCCCEEEEEe------------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 92 --SAPPLCIRFYANGRHILSAG------------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 92 --~~~v~~i~~~~~~~~l~s~s------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
...+.+++|+|+|+++++++ .++.|.+||+.+++....+.
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------------------- 132 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-------------------------- 132 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--------------------------
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--------------------------
Confidence 23688999999999998886 57999999987665443331
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
....+.+++|+|+|++++++ ++.|++||+.++...
T Consensus 133 -------------------------------------------~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 133 -------------------------------------------APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLV 167 (337)
T ss_dssp -------------------------------------------CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEE
T ss_pred -------------------------------------------CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEe
Confidence 12346678899999998888 689999999998776
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-C-----------------------eEEEEECCCCceEEEee--
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-G-----------------------DIKVWDFKGRDLKSRWE-- 291 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g-----------------------~i~iwd~~~~~~~~~~~-- 291 (685)
..+... .+..+ +.|+|++..++.++.+ + .|.+||+.+++.. ...
T Consensus 168 ~~~~~~------~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~ 237 (337)
T 1pby_B 168 EDKPIQ------SWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR 237 (337)
T ss_dssp EEECST------TTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE
T ss_pred eeeecc------ccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC
Confidence 554310 11122 2678888766544422 2 4789999988775 322
Q ss_pred -cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 292 -VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 292 -~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
....+..++|+|++++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|++||+.+++.+
T Consensus 238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 23567889999999999888 699999999999988888744 46789999999999999999999999999999998
Q ss_pred eEEeecc
Q 005656 371 DAIHVDV 377 (685)
Q Consensus 371 ~~~~~~~ 377 (685)
..+..+.
T Consensus 315 ~~~~~~~ 321 (337)
T 1pby_B 315 GQVDLPG 321 (337)
T ss_dssp EEEECGG
T ss_pred EEEEcCC
Confidence 8887553
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=1.5e-23 Score=237.67 Aligned_cols=352 Identities=7% Similarity=0.015 Sum_probs=224.6
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecC-----
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT----- 77 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~----- 77 (685)
..|++++|||| +.++++ .++.|++||+.+++..... .+...+.+++|+|||+.|+++ .|+.|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 46999999999 524444 3599999999998876554 467789999999999999985 689999999987
Q ss_pred CCCCCceeEecccCCC--------------CCeEEEEecCCCEEEEEeCC-CceEEEEeecCceeeEechhhHHHHHhhc
Q 005656 78 TDGDPRLLRFRSGHSA--------------PPLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKL 142 (685)
Q Consensus 78 ~~~~~~~~~~~~~h~~--------------~v~~i~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 142 (685)
+ ........+.. .+.++.|+|||++|++++.| ..+..|.+.......
T Consensus 156 g----~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~-------------- 217 (706)
T 2z3z_A 156 S----RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE-------------- 217 (706)
T ss_dssp C----CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS--------------
T ss_pred C----CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC--------------
Confidence 4 22222222222 25899999999999988743 333333332111000
Q ss_pred cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 005656 143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 222 (685)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 222 (685)
+........ . .+ .......+++|++....... +.....+...+.+++|+|+|+++++++.
T Consensus 218 ---------~~~~~~~y~--~--~g-----~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~ 277 (706)
T 2z3z_A 218 ---------AESKPLYYP--M--AG-----TPSHHVTVGIYHLATGKTVY--LQTGEPKEKFLTNLSWSPDENILYVAEV 277 (706)
T ss_dssp ---------CEEEEECCC--B--TT-----SCCCEEEEEEEETTTTEEEE--CCCCSCTTCEEEEEEECTTSSEEEEEEE
T ss_pred ---------CceEEeeCC--C--CC-----CCCCeeEEEEEECCCCceEe--eccCCCCceeEeeEEEECCCCEEEEEEe
Confidence 000000000 0 00 01123567888887543221 1111245567899999999999999887
Q ss_pred CC-----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcC--CCCEEEEEECCCeEEEEECC-CCceEEEeecC-
Q 005656 223 GG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG- 293 (685)
Q Consensus 223 dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~- 293 (685)
++ .|++||+.++.....+... ........+.+++|+| +|+++++++.||.+++|++. ++.....+..+
T Consensus 278 ~~~~~~~~v~~~d~~~g~~~~~~~~~---~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 354 (706)
T 2z3z_A 278 NRAQNECKVNAYDAETGRFVRTLFVE---TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE 354 (706)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEE---ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred CCCCCeeEEEEEECCCCceeeEEEEc---cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence 75 8999999998333222110 0001112346789999 99999999999999999876 55555555543
Q ss_pred CceeE-EEEeecCCEEEEEeCC-C----eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEE
Q 005656 294 CSLVK-IVYHRVNGLLATVADD-L----VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD----GSLRIWD 363 (685)
Q Consensus 294 ~~i~~-~~~~~~~~~l~~~~~d-g----~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D----g~I~iwd 363 (685)
..+.. ++|+|+++.|+.++.+ + .|+.||+.+++ ...+. |...+.+++|||||++++.++.+ +.|++||
T Consensus 355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 55665 7999999977665544 3 67778887776 33444 67789999999999988876443 5699999
Q ss_pred cCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCC-CeEEEEE
Q 005656 364 VILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ-NGVYLWV 405 (685)
Q Consensus 364 ~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~-~~I~lW~ 405 (685)
+.+++ ...+....++....+.+. ..+.....++ ..+..|-
T Consensus 433 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~ 473 (706)
T 2z3z_A 433 IGKGS-HTLLEAKNPDTGYAMPEI-RTGTIMAADGQTPLYYKL 473 (706)
T ss_dssp SSSCE-EEEEECC------CCCCE-EEEEEECTTSSSEEEEEE
T ss_pred CCCCe-EeeccccchhhhcCCCCc-EEEEEEcCCCCEEEEEEE
Confidence 99887 444444334544444333 2333333354 4566654
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=1e-23 Score=215.83 Aligned_cols=268 Identities=7% Similarity=0.040 Sum_probs=204.5
Q ss_pred cEEEEecCCCcEEEEEecCCCCCCceeEecc-cCCC-CCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhH
Q 005656 59 PVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSA-PPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHV 135 (685)
Q Consensus 59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~-~h~~-~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~ 135 (685)
+++++++.+++|.+||..++ +.+..+. ++.. .+.+++|+|+|++++ +++.++.|.+||+.+++....+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM----AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT----EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred cEEEEcCCCCeEEEEECCCC----cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence 47899999999999998776 4554443 2222 588999999998765 455678999999987765544421000
Q ss_pred HHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC
Q 005656 136 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 215 (685)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 215 (685)
..+...+..++|+|+|+
T Consensus 78 ---------------------------------------------------------------~~~~~~~~~~~~s~dg~ 94 (337)
T 1pby_B 78 ---------------------------------------------------------------EERVKSLFGAALSPDGK 94 (337)
T ss_dssp ---------------------------------------------------------------TEEEECTTCEEECTTSS
T ss_pred ---------------------------------------------------------------ccccccccceEECCCCC
Confidence 00011345789999999
Q ss_pred EEEEEe------------cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656 216 FAVLGT------------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 283 (685)
Q Consensus 216 ~l~~g~------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (685)
+++++. .++.|.+||+.++.....+. ....+.+++|+|++++++++ ++.|++||+.+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE---------APRQITMLAWARDGSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---------CCSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred EEEEEecccccccccccccCceEEEEECCCCcEEEEEe---------CCCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence 999886 57999999999887765542 23457788999999988887 68999999999
Q ss_pred CceEEEeecCCceeEEEEeecCCEEEEEeCC-C-----------------------eEEEEEcCCCeeE-EEEecCCCCe
Q 005656 284 RDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L-----------------------VIRLFDVVALRMV-RKFEGHTDRI 338 (685)
Q Consensus 284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g-----------------------~I~i~d~~~~~~~-~~~~~h~~~I 338 (685)
++....+..+.....+.|+|++..+++.+.+ + .|.+||+.+++.. ..+..+...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 243 (337)
T 1pby_B 164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243 (337)
T ss_dssp TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCce
Confidence 9888777654322234789998866554432 2 4789999998764 3345677788
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 339 TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 339 ~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.+++|+|||++++++ ++.|++||+.+++.+..+..+..+.+++|+|+|++|++++.++ .|++|+..
T Consensus 244 ~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~i~v~d~~ 309 (337)
T 1pby_B 244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG-DLAAYDAE 309 (337)
T ss_dssp EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSS-EEEEEETT
T ss_pred eeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCC-cEEEEECc
Confidence 999999999999988 6899999999999998888777799999999999999987765 99999854
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1e-23 Score=239.92 Aligned_cols=281 Identities=10% Similarity=0.092 Sum_probs=206.0
Q ss_pred cCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCC---CCeEEEEecCCCEEEEEeCC---------C
Q 005656 47 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFYANGRHILSAGQD---------R 114 (685)
Q Consensus 47 ~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~s~d---------g 114 (685)
..+.+++|+|||+++++ +.||+|++||+.++ +....+.+|.. .|.+++|+|||++|++++.+ +
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g----~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETN----TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC----CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCC----cEEEEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 34788999999997766 78999999999877 34445555654 49999999999999999875 6
Q ss_pred ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCcee
Q 005656 115 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 194 (685)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (685)
.+.+||+.+++. ..+.
T Consensus 92 ~i~~~d~~~~~~-~~l~--------------------------------------------------------------- 107 (723)
T 1xfd_A 92 YYVLSKIPHGDP-QSLD--------------------------------------------------------------- 107 (723)
T ss_dssp EEEEEESSSCCC-EECC---------------------------------------------------------------
T ss_pred eEEEEECCCCce-Eecc---------------------------------------------------------------
Confidence 677888776643 1111
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCc------------------CEE
Q 005656 195 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG------------------EVV 256 (685)
Q Consensus 195 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~------------------~v~ 256 (685)
....+...+..++|||+|+.+++++. +.|++||+.++....... .+.. .+.
T Consensus 108 --~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~--------~~~~~~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 108 --PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS--------TGKEGVIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp --CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC--------CCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred --CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec--------CCCCCceECcccceeEEEEeccCcc
Confidence 11133445778999999999999886 799999999887654432 2222 347
Q ss_pred EEEEcCCCCEEEEEECCC----------------------------------eEEEEECCCCceEEEeec-------CCc
Q 005656 257 GVACDSTNTLMISAGYHG----------------------------------DIKVWDFKGRDLKSRWEV-------GCS 295 (685)
Q Consensus 257 ~l~~~~~~~~l~s~s~dg----------------------------------~i~iwd~~~~~~~~~~~~-------~~~ 295 (685)
+++|+|+|+.|++++.|+ .|++||+.+++....+.. ...
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 256 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY 256 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence 899999999999987553 799999998876444443 356
Q ss_pred eeEEEEeecCCEEEEEeC----CCeEEEEEcCCCeeEEEEec-CCCCeE----EEEEcCCCCEEEE--EeCCC------c
Q 005656 296 LVKIVYHRVNGLLATVAD----DLVIRLFDVVALRMVRKFEG-HTDRIT----DFCFSEDGKWLLS--SGMDG------S 358 (685)
Q Consensus 296 i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~-h~~~I~----~l~~spdg~~l~s--~s~Dg------~ 358 (685)
+..++|+|||+++++... +..|++||+.+++....+.. +...+. .++|||||++|+. +..++ .
T Consensus 257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 889999999998877653 35899999999987776654 344443 7899999997775 44667 5
Q ss_pred EEEEE-cCCCc--eeeEEe-eccceEE-EEEcCCCCeEEEEEeCC--CeEEEEEcC
Q 005656 359 LRIWD-VILAR--QIDAIH-VDVSITA-LSLSPNMDVLATAHVDQ--NGVYLWVNR 407 (685)
Q Consensus 359 I~iwd-~~~~~--~i~~~~-~~~~v~~-v~~spdg~~Lat~~~d~--~~I~lW~~~ 407 (685)
|++|| ..++. +...+. .+..+.. ++|||||+.|+.++.++ +.++||...
T Consensus 337 l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 77777 34444 144444 3344554 69999999998887764 589999864
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=2.9e-22 Score=206.22 Aligned_cols=294 Identities=9% Similarity=0.032 Sum_probs=199.9
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCce
Q 005656 6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
+.+++++++. ++++++.++.|.+||+.+++.+..+..+....+..++|+|+++++ +++..++.|.+||+.++ +.
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~----~~ 77 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC----KN 77 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT----EE
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC----cE
Confidence 3567888887 899999999999999999999888873332368899999999855 55667899999998765 44
Q ss_pred eEecccC------CCCCeEEEEecCCCEEEEEeCC------------CceEEEEeecCceeeEechhhHHHHHhhccccc
Q 005656 85 LRFRSGH------SAPPLCIRFYANGRHILSAGQD------------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE 146 (685)
Q Consensus 85 ~~~~~~h------~~~v~~i~~~~~~~~l~s~s~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (685)
......+ ...+.+++|+|+|+++++++.+ +.|.+||+.+++....+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------- 143 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT-------------- 143 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--------------
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--------------
Confidence 4433322 2348899999999999998865 8899999876432211100
Q ss_pred cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 005656 147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 226 (685)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 226 (685)
. .....+.+++|+|+|+ +++++ +.|
T Consensus 144 ------------------------------------------------~----~~~~~~~~~~~s~dg~-l~~~~--~~i 168 (349)
T 1jmx_B 144 ------------------------------------------------F----PMPRQVYLMRAADDGS-LYVAG--PDI 168 (349)
T ss_dssp ------------------------------------------------E----ECCSSCCCEEECTTSC-EEEES--SSE
T ss_pred ------------------------------------------------c----cCCCcccceeECCCCc-EEEcc--CcE
Confidence 0 1223577889999999 66653 459
Q ss_pred EEEECCCCcccccccccccccc-------------CC--C-CcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEE-
Q 005656 227 ERFNLQSGISRGSYLDMSERSN-------------YA--H-NGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS- 288 (685)
Q Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~-------------~~--h-~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~- 288 (685)
.+||+.+++....+........ .. | .....++++++++....... ....+..+|..+++...
T Consensus 169 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
T 1jmx_B 169 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 248 (349)
T ss_dssp EEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred EEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec
Confidence 9999999887655431100000 00 0 00334566665442110000 00112224444443211
Q ss_pred -EeecCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 289 -RWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 289 -~~~~~~~i~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
.-.....+..++++| ++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|++||+.+
T Consensus 249 ~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 249 EFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred ccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 111345788999999 99999888 889999999999988888743 4578999999999998888899999999999
Q ss_pred CceeeEEeec
Q 005656 367 ARQIDAIHVD 376 (685)
Q Consensus 367 ~~~i~~~~~~ 376 (685)
++.+..+..+
T Consensus 326 ~~~~~~~~~~ 335 (349)
T 1jmx_B 326 LEKVKNIKLP 335 (349)
T ss_dssp TEEEEEEECS
T ss_pred cceeeeeecC
Confidence 9988887655
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=237.42 Aligned_cols=339 Identities=10% Similarity=-0.004 Sum_probs=225.3
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeeccccc---CeeEEEEeCCCcEEEEecC---------CCcEEEEE
Q 005656 7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN---AIISLHFFANEPVLMSASA---------DNSIKMWI 74 (685)
Q Consensus 7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~s~---------D~~v~iWd 74 (685)
+++|+|||+ +++++ .||.|++||+.+++....+. +|.. .|.+++|||||++|++++. ++.|++||
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 678999996 66655 59999999999999877765 5544 4999999999999998876 78999999
Q ss_pred ecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
++++ +.+... .....+..++|+|||+.|+++. ++.|++|++.+++.......+..
T Consensus 97 ~~~g----~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~------------------- 151 (719)
T 1z68_A 97 LSNG----EFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE------------------- 151 (719)
T ss_dssp TTTT----EECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT-------------------
T ss_pred CCCC----ccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc-------------------
Confidence 8876 221000 1124688999999999999886 78999999977654322110000
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC----------
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG---------- 224 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---------- 224 (685)
. .+++-.. ..+.. ........+++|||||++|++++.+.
T Consensus 152 --------------~-----------~v~~g~~----~~v~~--ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~ 200 (719)
T 1z68_A 152 --------------N-----------KIFNGIP----DWVYE--EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY 200 (719)
T ss_dssp --------------T-----------TEEESSC----CHHHH--HHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred --------------C-----------CeEcccc----cceee--eecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence 0 0000000 00000 00012235899999999999987652
Q ss_pred ------------------------cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC----CeE
Q 005656 225 ------------------------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH----GDI 276 (685)
Q Consensus 225 ------------------------~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d----g~i 276 (685)
.|++||+.++...............+|...+..++|+|+++++++.... ..|
T Consensus 201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l 280 (719)
T 1z68_A 201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL 280 (719)
T ss_dssp CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence 7889999887653100000000112688899999999998777664432 248
Q ss_pred EEEE----CCCCceEEEee-----cCCcee-----EEEEeecCCEEEE--EeCCC--eEEEEEcCCCeeEEEEecCCCCe
Q 005656 277 KVWD----FKGRDLKSRWE-----VGCSLV-----KIVYHRVNGLLAT--VADDL--VIRLFDVVALRMVRKFEGHTDRI 338 (685)
Q Consensus 277 ~iwd----~~~~~~~~~~~-----~~~~i~-----~~~~~~~~~~l~~--~~~dg--~I~i~d~~~~~~~~~~~~h~~~I 338 (685)
.+|| ..+++....+. +...+. .+.|+|+|+.++. +..+| .|++||+.+++ ...+..+...+
T Consensus 281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v 359 (719)
T 1z68_A 281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEA 359 (719)
T ss_dssp EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCE
T ss_pred EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEE
Confidence 8999 87776655442 234454 7899999995554 44455 67788887776 45666667778
Q ss_pred EEEEEcCCCCEEEEEeCC-----CcEEEEEcCC--Cce-eeEEee-----ccceEEEEEcCCCCeEEEEEeCC--CeEEE
Q 005656 339 TDFCFSEDGKWLLSSGMD-----GSLRIWDVIL--ARQ-IDAIHV-----DVSITALSLSPNMDVLATAHVDQ--NGVYL 403 (685)
Q Consensus 339 ~~l~~spdg~~l~s~s~D-----g~I~iwd~~~--~~~-i~~~~~-----~~~v~~v~~spdg~~Lat~~~d~--~~I~l 403 (685)
..+.++ +++.|+..+.+ +.+++|.+.. +.. ...+.. ...+..+.|+|+|++++..+.+. ..+++
T Consensus 360 ~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l 438 (719)
T 1z68_A 360 INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTL 438 (719)
T ss_dssp EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEE
T ss_pred EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEE
Confidence 888888 88888777654 8899998764 421 233321 23478899999999888654332 36778
Q ss_pred EEc
Q 005656 404 WVN 406 (685)
Q Consensus 404 W~~ 406 (685)
|+.
T Consensus 439 ~d~ 441 (719)
T 1z68_A 439 HDG 441 (719)
T ss_dssp ECS
T ss_pred EEC
Confidence 864
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=2.2e-21 Score=199.67 Aligned_cols=291 Identities=12% Similarity=0.121 Sum_probs=197.2
Q ss_pred EEEEEe----CCCcEEEEeC--CCCeeeEEeecccccCeeEEEEeCCCcEEEEecC---CCcEEEEEecCCCCCCceeEe
Q 005656 17 LLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRF 87 (685)
Q Consensus 17 ~latg~----~dg~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~ 87 (685)
.+++|+ .++.|.+|++ .+++........+...+..++|+|+|+ |++++. ++.|.+|+++.+. .+.+..
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~--~~~~~~ 80 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT--AHKLNT 80 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE--EEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc--EEEeee
Confidence 455554 3455777755 456654432225667889999999999 555443 6899999996542 234455
Q ss_pred cccCCCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656 88 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 166 (685)
Q Consensus 88 ~~~h~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (685)
...+...+..++|+|+|++|++++ .++.+.+|++........+..
T Consensus 81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~---------------------------------- 126 (347)
T 3hfq_A 81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDT---------------------------------- 126 (347)
T ss_dssp EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEE----------------------------------
T ss_pred eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecce----------------------------------
Confidence 456788899999999999999888 679999999964322221110
Q ss_pred CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC-CCccccccccccc
Q 005656 167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSE 245 (685)
Q Consensus 167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~-~~~~~~~~~~~~~ 245 (685)
..... .+.. .......+.+++|+|+|+.++++..++.|.+|++. ++.......
T Consensus 127 ----------------~~~~~--~~p~----~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~---- 180 (347)
T 3hfq_A 127 ----------------VQHSG--HGPR----PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSV---- 180 (347)
T ss_dssp ----------------EECCC--CCSS----TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEE----
T ss_pred ----------------eecCC--CCCC----ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeee----
Confidence 00000 0000 00234568899999999966666678899999998 443321110
Q ss_pred cccCCCCcCEEEEEEcCCCCEEEEE-ECCCeEEEEECCC--CceEE--Eeec-C------CceeEEEEeecCCEEE-EEe
Q 005656 246 RSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKG--RDLKS--RWEV-G------CSLVKIVYHRVNGLLA-TVA 312 (685)
Q Consensus 246 ~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~--~~~~~--~~~~-~------~~i~~~~~~~~~~~l~-~~~ 312 (685)
........+..++|+|+|++++++ ..++.|.+|++.. ++... .+.. . ..+..++|+|+|++|+ ++.
T Consensus 181 -~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~ 259 (347)
T 3hfq_A 181 -LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR 259 (347)
T ss_dssp -EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred -EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence 001223467889999999966664 5688999999874 54322 2221 1 3478899999999774 555
Q ss_pred CCCeEEEEEcC---CCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE--EcCCCceee
Q 005656 313 DDLVIRLFDVV---ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM-DGSLRIW--DVILARQID 371 (685)
Q Consensus 313 ~dg~I~i~d~~---~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~-Dg~I~iw--d~~~~~~i~ 371 (685)
.++.|.+|++. ..+.+..+..+...+..++|+|||++|++++. ++.|.+| |..+|++..
T Consensus 260 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 260 GYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 68999999997 33566677777777899999999999988875 4899999 545676653
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=3.4e-21 Score=199.48 Aligned_cols=310 Identities=15% Similarity=0.130 Sum_probs=208.6
Q ss_pred EEEEEe----CCCcEEEEeC--CCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC----CcEEEEEecCCCCCCceeE
Q 005656 17 LLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD----NSIKMWIFDTTDGDPRLLR 86 (685)
Q Consensus 17 ~latg~----~dg~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D----~~v~iWd~~~~~~~~~~~~ 86 (685)
++++|+ .++.|.+|.+ .+++...... .+...+..++|+|++++|++++.+ +.|.+|+++...+..+.+.
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~-~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSD-AEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEE-EECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeec-ccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 667775 3567999866 5566555444 277788999999999999998875 7999999987544444555
Q ss_pred ecccCCCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccccc
Q 005656 87 FRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 165 (685)
Q Consensus 87 ~~~~h~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (685)
....+...+..+++ ++++|++++ .++.|.+|++........+..
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~--------------------------------- 138 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD--------------------------------- 138 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---------------------------------
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---------------------------------
Confidence 54445666777887 888888776 578999999975433221110
Q ss_pred CCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCcc------cc
Q 005656 166 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGIS------RG 238 (685)
Q Consensus 166 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~------~~ 238 (685)
...... .-..+.......+.+++|+|+|++++++. .++.|.+|++..... ..
T Consensus 139 ----------------~~~~~g-----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 139 ----------------VIEFKG-----SGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp ----------------EEECCC-----CCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred ----------------eEEccC-----CCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 000000 00000112344578999999999776655 478999998875442 10
Q ss_pred ccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEE--eec----CCceeEEEEeecCCEEEEE
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSR--WEV----GCSLVKIVYHRVNGLLATV 311 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~--~~~----~~~i~~~~~~~~~~~l~~~ 311 (685)
.... .......+...+.+++|+|+|+++++++ .++.|.+|++.++.+... +.. ......++|+|+|++|+++
T Consensus 198 ~~~~-~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~ 276 (361)
T 3scy_A 198 TKGT-PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS 276 (361)
T ss_dssp EEEE-EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred eccc-ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence 0000 0001114455678999999999887777 689999999987755322 221 1346799999999988776
Q ss_pred eCC--CeEEEEEcC--CCe--eEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEc--CCCceeeEEe-ec-cceE
Q 005656 312 ADD--LVIRLFDVV--ALR--MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILARQIDAIH-VD-VSIT 380 (685)
Q Consensus 312 ~~d--g~I~i~d~~--~~~--~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~--~~~~~i~~~~-~~-~~v~ 380 (685)
..+ +.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+|++ .++++..... .+ ..+.
T Consensus 277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~ 355 (361)
T 3scy_A 277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV 355 (361)
T ss_dssp ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence 654 899999996 444 4555554 55788999999999998887 6789999655 4676654431 22 2488
Q ss_pred EEEEc
Q 005656 381 ALSLS 385 (685)
Q Consensus 381 ~v~~s 385 (685)
|+.|.
T Consensus 356 ~v~~~ 360 (361)
T 3scy_A 356 CLKFV 360 (361)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88885
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=7.4e-23 Score=226.41 Aligned_cols=271 Identities=12% Similarity=0.120 Sum_probs=205.3
Q ss_pred ccccCeeEEEEeCCCcEEEEecC-CCcEEEEEecCCCCCCceeEecccCC-CCCeEEEEecCCCEEEEEeC---CCceEE
Q 005656 44 AHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQ---DRAFRL 118 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~-D~~v~iWd~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~s~---dg~i~v 118 (685)
.+..+|++++|+|||+.||+++. ||+++||+++.+ ...+ +..|. ..+..++|+|| +.+++++. +...++
T Consensus 19 ~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g----~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 19 LIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG----ETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT----EEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEE
T ss_pred HhccchheeecCCCCCeEEEEEccCCceeEEEEcCC----CcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEE
Confidence 34668999999999999999887 999999998654 3333 33444 68999999999 77777765 456677
Q ss_pred EEeec--CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 119 FSVIQ--DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 119 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
|.+.. ......+
T Consensus 93 ~~~~~~~~g~~~~l------------------------------------------------------------------ 106 (582)
T 3o4h_A 93 FKVNTSRPGEEQRL------------------------------------------------------------------ 106 (582)
T ss_dssp EEEETTSTTCCEEC------------------------------------------------------------------
T ss_pred EEEeccCCCccccc------------------------------------------------------------------
Confidence 76654 2211111
Q ss_pred CCCCCCCCeEEEEEccCCCE-EEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC--
Q 005656 197 PCPENPTAVKACTISACGNF-AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-- 273 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-- 273 (685)
.........+|+|+|+. +++...++.+.+||+.++...... .+.. .+++|+|+|+++++++.+
T Consensus 107 ---~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~---------~~~~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 107 ---EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA---------RLPG--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp ---TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE---------EESS--CEEEEEEETTEEEEEEEEET
T ss_pred ---cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee---------cCCC--ceEEECCCCCEEEEEEEcCC
Confidence 11223446688888864 344445556669999888655433 2222 789999999999988877
Q ss_pred --CeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC--eEEEEEcCCCeeEEEEecCCCCeEEEE-------
Q 005656 274 --GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL--VIRLFDVVALRMVRKFEGHTDRITDFC------- 342 (685)
Q Consensus 274 --g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~~h~~~I~~l~------- 342 (685)
+.|++||+.+++......+...+..++|+|||+.|+++..++ .|++||+.+++.. .+.+|...+..++
T Consensus 173 ~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp TEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred CCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 789999999988776555567889999999999999888888 8999999999887 7788888777777
Q ss_pred -EcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCC--eEEEEEc
Q 005656 343 -FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN--GVYLWVN 406 (685)
Q Consensus 343 -~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~--~I~lW~~ 406 (685)
|+|||.++++++.||++++|++ |+... .....+.+++|+ +|+++++++.+.. .|++|+.
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 9999999999999999999999 66554 223458999999 9999999888753 3555553
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.3e-20 Score=195.05 Aligned_cols=281 Identities=14% Similarity=0.158 Sum_probs=195.7
Q ss_pred CcEEEEe----cCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC----CceEEEEeecC-ceee
Q 005656 58 EPVLMSA----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQD-QQSR 128 (685)
Q Consensus 58 ~~~l~s~----s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----g~i~vwd~~~~-~~~~ 128 (685)
..+++.| +.++.|.+|.++...+....+... +...+..++|+|+|++|++++.+ +.|.+|++... ....
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3455555 346789999998766655555544 77888999999999999999886 79999998763 1111
Q ss_pred EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656 129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 208 (685)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (685)
.+... .........+
T Consensus 91 ~~~~~-----------------------------------------------------------------~~~~~~p~~~ 105 (361)
T 3scy_A 91 LLNTQ-----------------------------------------------------------------KTMGADPCYL 105 (361)
T ss_dssp EEEEE-----------------------------------------------------------------ECSSSCEEEE
T ss_pred EeeEe-----------------------------------------------------------------ccCCCCcEEE
Confidence 11100 0123345666
Q ss_pred EEccCCCEEEEEe-cCCcEEEEECCCCccccccccc------cccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 005656 209 TISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDM------SERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWD 280 (685)
Q Consensus 209 ~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~------~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd 280 (685)
++ +|++++++. .++.|.+|++............ .......+...+.+++|+|+|+++++++ .++.|.+|+
T Consensus 106 ~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 183 (361)
T 3scy_A 106 TT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFN 183 (361)
T ss_dssp EE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 77 788777765 5789999999764433222110 0000112344578999999999776665 578999999
Q ss_pred CCCCc-------e-------EEEeecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCee--EEEEe---cCCCCeEE
Q 005656 281 FKGRD-------L-------KSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRM--VRKFE---GHTDRITD 340 (685)
Q Consensus 281 ~~~~~-------~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~--~~~~~---~h~~~I~~ 340 (685)
+.... + .........+..++|+|+|+++++++ .++.|.+||+.+++. +..+. .+...+..
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 263 (361)
T 3scy_A 184 INPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGD 263 (361)
T ss_dssp ECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEE
T ss_pred EcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCccc
Confidence 87533 2 22233346678999999999887777 689999999997754 33333 23455789
Q ss_pred EEEcCCCCEEEEEeC--CCcEEEEEcC--CCc--eeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 341 FCFSEDGKWLLSSGM--DGSLRIWDVI--LAR--QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 341 l~~spdg~~l~s~s~--Dg~I~iwd~~--~~~--~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
++|+|||++|+++.. ++.|.+|++. +++ .+..+.....+.+++|+|||++|++++.+++.|.+|...
T Consensus 264 i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 264 IHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 999999999877665 4899999995 455 344444444589999999999999999766799998643
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=1.4e-22 Score=224.20 Aligned_cols=270 Identities=11% Similarity=0.029 Sum_probs=202.0
Q ss_pred CCcEEEEEEccCCCCEEEEEeC-CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecC---CCcEEEEEecC
Q 005656 2 RGAVTALAFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDT 77 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~-dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---D~~v~iWd~~~ 77 (685)
..+|++++|+|||+ .||+++. ||++.||++.+++...... .+...+.+++|+|| +++++++. +...++|.++.
T Consensus 21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~~~~lt~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGETVKLNR-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTEEEECCS-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCCcEeeec-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 35799999999999 7887765 9999999997777655443 44468999999999 78887765 56678888776
Q ss_pred --CCCCCceeEecccCCCCCeEEEEecCCCE-EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 78 --TDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 78 --~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
.... . .+.. ...+...+|+|+|+. +++.+.++.+.+||+.+++......
T Consensus 98 ~~~g~~-~---~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~----------------------- 149 (582)
T 3o4h_A 98 SRPGEE-Q---RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR----------------------- 149 (582)
T ss_dssp TSTTCC-E---ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-----------------------
T ss_pred cCCCcc-c---cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-----------------------
Confidence 3221 2 1211 223456789998763 3344445556699998775432221
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC----CcEEEEE
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----GWIERFN 230 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----g~i~~~d 230 (685)
+.. .+++|||||+++++++.+ +.|++||
T Consensus 150 ----------------------------------------------~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d 181 (582)
T 3o4h_A 150 ----------------------------------------------LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN 181 (582)
T ss_dssp ----------------------------------------------ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred ----------------------------------------------CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence 111 678999999999988777 7899999
Q ss_pred CCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC--eEEEEECCCCceEEEeec-CCceeEEE-------
Q 005656 231 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG--DIKVWDFKGRDLKSRWEV-GCSLVKIV------- 300 (685)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~-~~~i~~~~------- 300 (685)
+.++..... . .|.+.+..++|+|||+.|+++..++ .|++||+.+++.. .+.. ...+..++
T Consensus 182 ~~~g~~~~l-~--------~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 182 LSSGGLRVF-D--------SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp TTTCCCEEE-C--------CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred CCCCCceEe-e--------cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 998876532 2 7888899999999999999888888 8999999998877 4433 34455555
Q ss_pred -EeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEEcCC
Q 005656 301 -YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS---LRIWDVIL 366 (685)
Q Consensus 301 -~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~---I~iwd~~~ 366 (685)
|+|||.++++++.|+.+++|++ ++... .+.+.|.+++|+ ||+++++++.+.+ +++||..+
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999999999999999999 66554 345678999999 9999998887754 66666543
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=6.2e-21 Score=196.31 Aligned_cols=273 Identities=11% Similarity=0.083 Sum_probs=187.9
Q ss_pred CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC---CCceEEEEeecCceeeEechhhHHHHHhhc
Q 005656 66 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKL 142 (685)
Q Consensus 66 ~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 142 (685)
.++.|.+|.++...+....+.. ..+...+..++|+|+|+ |++++. ++.|++|++.++........
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~-~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~---------- 81 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGL-LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV---------- 81 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEE-EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE----------
T ss_pred CCCCEEEEEEcCCCCeEEEeee-eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee----------
Confidence 4678999999876554333333 34567788999999999 665554 68999999965542111100
Q ss_pred cccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-
Q 005656 143 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT- 221 (685)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~- 221 (685)
..+...+..++|+|+|+++++++
T Consensus 82 --------------------------------------------------------~~~~~~p~~~a~spdg~~l~~~~~ 105 (347)
T 3hfq_A 82 --------------------------------------------------------VAPGTPPAYVAVDEARQLVYSANY 105 (347)
T ss_dssp --------------------------------------------------------EEESCCCSEEEEETTTTEEEEEET
T ss_pred --------------------------------------------------------ecCCCCCEEEEECCCCCEEEEEeC
Confidence 01234567899999999988887
Q ss_pred cCCcEEEEECCCCcccccccccccc----ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC-CCceEEE--ee--c
Q 005656 222 AGGWIERFNLQSGISRGSYLDMSER----SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSR--WE--V 292 (685)
Q Consensus 222 ~dg~i~~~d~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~--~~--~ 292 (685)
.++.|.+|++........+...... ....+...+.+++|+|+|+.+++...++.|.+|++. ++++... +. .
T Consensus 106 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 185 (347)
T 3hfq_A 106 HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA 185 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT
T ss_pred CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC
Confidence 6799999999632221111100000 000133458899999999966666678899999998 5544322 12 2
Q ss_pred CCceeEEEEeecCCEEEE-EeCCCeEEEEEcCC--Cee--EEEEecCC------CCeEEEEEcCCCCEEE-EEeCCCcEE
Q 005656 293 GCSLVKIVYHRVNGLLAT-VADDLVIRLFDVVA--LRM--VRKFEGHT------DRITDFCFSEDGKWLL-SSGMDGSLR 360 (685)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~-~~~dg~I~i~d~~~--~~~--~~~~~~h~------~~I~~l~~spdg~~l~-s~s~Dg~I~ 360 (685)
...+..++|+|+|+++++ +..++.|.+|++.. ++. +..+.... ..+..++|+|||++|+ +...++.|.
T Consensus 186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~ 265 (347)
T 3hfq_A 186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA 265 (347)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence 346788999999996655 56688999999874 543 33443333 3488999999999875 556789999
Q ss_pred EEEcCC-C--ceeeEEeecc-ceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 361 IWDVIL-A--RQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 361 iwd~~~-~--~~i~~~~~~~-~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
+|++.. + +.+..+..+. .+.+++|+|||++|++++.+++.|.+|..
T Consensus 266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 266 VFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 999973 3 3444454433 48999999999999999987679999964
No 155
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=8.1e-22 Score=197.35 Aligned_cols=233 Identities=13% Similarity=0.147 Sum_probs=176.8
Q ss_pred CCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeeeEEeeccc-ccCeeEEEEeCCCcEEEEec--CCCcEEEEEec
Q 005656 1 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAH-DNAIISLHFFANEPVLMSAS--ADNSIKMWIFD 76 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~-~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~s--~D~~v~iWd~~ 76 (685)
|.+.|.+++|+|||+ +|++++ ++.|.+||+.+ ++...... +| ...|.+++|+|++++|++++ .++..++|.++
T Consensus 40 ~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 40 TPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDT-GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp ESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCC-TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred CCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEecc-ccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence 467899999999999 888876 78999999999 87776665 44 57899999999999999998 45678888887
Q ss_pred CCCCCCceeEecccCCCCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 77 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
...+. ...+..+ ..+.+++|+|++++|+ +++.++.+++|++.....
T Consensus 117 ~~~~~---~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~----------------------------- 163 (297)
T 2ojh_A 117 STGGT---PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG----------------------------- 163 (297)
T ss_dssp TTCCC---CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-----------------------------
T ss_pred CCCCc---eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC-----------------------------
Confidence 65433 2233333 3488899999999877 677888888888642210
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 235 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~ 235 (685)
.
T Consensus 164 -------------------------------------------------------------------------------~ 164 (297)
T 2ojh_A 164 -------------------------------------------------------------------------------V 164 (297)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred cccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCceEEEee-cCCceeEEEEeecCCEEEEEe
Q 005656 236 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK-GRDLKSRWE-VGCSLVKIVYHRVNGLLATVA 312 (685)
Q Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 312 (685)
.. ....|...+.+++|+|+++.+++++ .++.+++|++. .+.....+. +...+..+.|+|++++|++++
T Consensus 165 ~~---------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 165 ET---------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp EE---------ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred ce---------EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence 00 0015566788999999999887766 58899999875 343444443 346788999999999998887
Q ss_pred CC-----------CeEEEEEcCCCee--EEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656 313 DD-----------LVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 313 ~d-----------g~I~i~d~~~~~~--~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg 357 (685)
.+ +.|++||+.+++. +..+.+|...+.+++|+|||++|++++.+.
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 65 5799999998865 445558889999999999999999887653
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=4e-21 Score=197.60 Aligned_cols=279 Identities=13% Similarity=0.052 Sum_probs=192.9
Q ss_pred EEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCC-CCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceee
Q 005656 51 SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSR 128 (685)
Q Consensus 51 ~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~ 128 (685)
++++++++.++++++.+++|++||..++ +.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++...
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD----TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT----EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC----cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 4567888999999999999999998776 5555544332 2578999999998665 44568999999998776544
Q ss_pred EechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEE
Q 005656 129 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 208 (685)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (685)
.+..... .......+..+
T Consensus 80 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~ 97 (349)
T 1jmx_B 80 HANLSSV--------------------------------------------------------------PGEVGRSMYSF 97 (349)
T ss_dssp EEESCCS--------------------------------------------------------------TTEEEECSSCE
T ss_pred EEEcccc--------------------------------------------------------------cccccccccce
Confidence 4321000 00001235678
Q ss_pred EEccCCCEEEEEecC------------CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeE
Q 005656 209 TISACGNFAVLGTAG------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 276 (685)
Q Consensus 209 ~~s~~g~~l~~g~~d------------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 276 (685)
+|+|+|++++++..+ +.|.+||+.++........ ..+...+.+++|+|+++ +++++ +.|
T Consensus 98 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~s~dg~-l~~~~--~~i 168 (349)
T 1jmx_B 98 AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT------FPMPRQVYLMRAADDGS-LYVAG--PDI 168 (349)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE------EECCSSCCCEEECTTSC-EEEES--SSE
T ss_pred EECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee------ccCCCcccceeECCCCc-EEEcc--CcE
Confidence 999999999998865 8999999988654332210 12344688999999999 65554 459
Q ss_pred EEEECCCCceEEEeecCC-------------------------ceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCee-EE
Q 005656 277 KVWDFKGRDLKSRWEVGC-------------------------SLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRM-VR 329 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~-~~ 329 (685)
.+||..+++....+..+. ....+++++++........ ...+..+|..+++. ..
T Consensus 169 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
T 1jmx_B 169 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 248 (349)
T ss_dssp EEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred EEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec
Confidence 999999998877665442 3344556554421100000 01122244444432 11
Q ss_pred EEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 330 KFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 330 ~~~~h~~~I~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.+..+...+..++|+| ||++++++ ++.|.+||+.+++.+..+.....+.+++|+|+|++|++++.++ .|++|+..
T Consensus 249 ~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~v~v~d~~ 324 (349)
T 1jmx_B 249 EFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN-DLAVFNPD 324 (349)
T ss_dssp EEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS-EEEEEETT
T ss_pred ccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCC-eEEEEecc
Confidence 2234666789999999 99999988 8899999999999988888777789999999999999987674 99999854
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=2.4e-21 Score=202.74 Aligned_cols=296 Identities=10% Similarity=0.010 Sum_probs=203.7
Q ss_pred EEEeCCCCeeeEEeecccccCeeE-----EEEeCCCcEEEEecC-CCc--EEEEEecCCCCCCceeEecccCCCCCeEEE
Q 005656 28 SIWNLEKRRLQSVIREAHDNAIIS-----LHFFANEPVLMSASA-DNS--IKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 99 (685)
Q Consensus 28 ~vwd~~~~~~~~~~~~~h~~~V~~-----l~~sp~~~~l~s~s~-D~~--v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~ 99 (685)
..+|..++.....+. .|...... .+|+|||++|+.++. ++. |.+||++++ .......++...+..+.
T Consensus 13 ~~~~~~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g----~~~~lt~~~~~~~~~~~ 87 (388)
T 3pe7_A 13 TYQDASTGAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ----VATQLTEGRGDNTFGGF 87 (388)
T ss_dssp EEECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC----EEEECCCSSCBCSSSCE
T ss_pred EEecCCCCcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC----ceEEeeeCCCCCccceE
Confidence 345777788777776 67666665 889999999988887 775 555555544 44445556666666789
Q ss_pred EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656 100 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 179 (685)
Q Consensus 100 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (685)
|+|||+.|+.++.++.|++||+.+++......
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~------------------------------------------------ 119 (388)
T 3pe7_A 88 LSPDDDALFYVKDGRNLMRVDLATLEENVVYQ------------------------------------------------ 119 (388)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEE------------------------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeeee------------------------------------------------
Confidence 99999999999999999999998776443321
Q ss_pred EEEEEcCccccCceeecCCCCCCCCeE--EEEEccCCCEEEEE----------------------ecCCcEEEEECCCCc
Q 005656 180 AYVWRLQNFVLGEHILRPCPENPTAVK--ACTISACGNFAVLG----------------------TAGGWIERFNLQSGI 235 (685)
Q Consensus 180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~g~~l~~g----------------------~~dg~i~~~d~~~~~ 235 (685)
.+...+. ...++++|.+++.. ..++.|++||+.++.
T Consensus 120 --------------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 120 --------------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp --------------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred --------------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 1111121 22347777776642 234679999999886
Q ss_pred cccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECC------CeEEEEECCCCceEEEeecC--CceeEEEEeecCC
Q 005656 236 SRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYH------GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNG 306 (685)
Q Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~ 306 (685)
..... .+...+..+.|+| +|+.|+.++.+ ..|.++|..++......... ..+....|+|+|+
T Consensus 180 ~~~l~---------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 180 STVIL---------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EEEEE---------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSS
T ss_pred eEEee---------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCC
Confidence 54433 4566789999999 99988887753 37888888776554444433 3577889999999
Q ss_pred EEEEEeC-CC----eEEEEEcCCCeeE--EEEecCCCC---eEEEEEcCCCCEEEEE---------eCCCcEEEEEcCCC
Q 005656 307 LLATVAD-DL----VIRLFDVVALRMV--RKFEGHTDR---ITDFCFSEDGKWLLSS---------GMDGSLRIWDVILA 367 (685)
Q Consensus 307 ~l~~~~~-dg----~I~i~d~~~~~~~--~~~~~h~~~---I~~l~~spdg~~l~s~---------s~Dg~I~iwd~~~~ 367 (685)
.|+..+. ++ .|++||+.+++.. ..+.++... ...++|+|||++|+.. ..+..|++||+.++
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 7755443 22 4999999988643 333331100 1223799999988854 45668999999988
Q ss_pred ceeeEEeecc-----------ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 368 RQIDAIHVDV-----------SITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 368 ~~i~~~~~~~-----------~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+......... .+.+++|+|||+.|+.++..++...||.
T Consensus 331 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 331 TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 7654444444 4788999999999998886555666765
No 158
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=1.5e-20 Score=193.72 Aligned_cols=246 Identities=10% Similarity=0.071 Sum_probs=193.1
Q ss_pred CCCCeEEEEecCCCEEEEEeC-------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656 92 SAPPLCIRFYANGRHILSAGQ-------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 164 (685)
Q Consensus 92 ~~~v~~i~~~~~~~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (685)
...+..++|+|+++++++++. ++.|.+||..+++....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-------------------------------- 87 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-------------------------------- 87 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--------------------------------
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--------------------------------
Confidence 455789999999998888874 56799999887765544421
Q ss_pred cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccc
Q 005656 165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDM 243 (685)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~ 243 (685)
...+..++++|+|++++++ ..++.|.+||+.+++....+...
T Consensus 88 -------------------------------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 130 (353)
T 3vgz_A 88 -------------------------------------DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLD 130 (353)
T ss_dssp -------------------------------------SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESC
T ss_pred -------------------------------------CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecC
Confidence 1235678999999966655 45799999999999876665310
Q ss_pred cccc-cCCCCcCEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 244 SERS-NYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 244 ~~~~-~~~h~~~v~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
.... .......+.+++|+|+++++++++ .++.|.+||..+++....+. ....+..++|+|+++++++++.++.|.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~ 210 (353)
T 3vgz_A 131 DRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELIT 210 (353)
T ss_dssp CCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEE
T ss_pred CCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEE
Confidence 0000 000111378999999999877776 47899999999999988887 4566889999999999999999999999
Q ss_pred EEcCCCeeEEEEec----CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEE
Q 005656 320 FDVVALRMVRKFEG----HTDRITDFCFSEDGKWLLSSGM-DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATA 394 (685)
Q Consensus 320 ~d~~~~~~~~~~~~----h~~~I~~l~~spdg~~l~s~s~-Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~ 394 (685)
||+.+++.+..+.. +...+.+++|+|+|+++++++. ++.|.+||+.+++.+..+....+ .+++|+|+|++++++
T Consensus 211 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 211 IDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVT 289 (353)
T ss_dssp EETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEE
T ss_pred EECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEE
Confidence 99999999888774 5667889999999998776664 58999999999999888876654 679999999988888
Q ss_pred EeCCCeEEEEEcC
Q 005656 395 HVDQNGVYLWVNR 407 (685)
Q Consensus 395 ~~d~~~I~lW~~~ 407 (685)
+..++.|.+|+..
T Consensus 290 ~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 290 HRQAGKVSVIDAK 302 (353)
T ss_dssp ETTTTEEEEEETT
T ss_pred ECCCCeEEEEECC
Confidence 7655699999854
No 159
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.87 E-value=5.7e-20 Score=189.58 Aligned_cols=284 Identities=11% Similarity=0.172 Sum_probs=199.4
Q ss_pred CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CCCcEEEEEecCCCCCCceeEeccc--
Q 005656 23 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDPRLLRFRSG-- 90 (685)
Q Consensus 23 ~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D~~v~iWd~~~~~~~~~~~~~~~~-- 90 (685)
.|+.|.+||..+++.+..+. .+..+ .++|+||++++++++ .+++|.+||..+. +.+..+..
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~----~~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL----TFEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC----CEEEEEEECT
T ss_pred ccCeEEEEECCCCeEEEEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC----cEEEEEEcCc
Confidence 36899999999999988887 55555 999999999998876 3678999998765 44443322
Q ss_pred ----CCCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeE-echhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 91 ----HSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRE-LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 91 ----h~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
+...+..++|+|||++|+++.. +++|.+||+.+++.... +..
T Consensus 102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~------------------------------- 150 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA------------------------------- 150 (361)
T ss_dssp TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-------------------------------
T ss_pred cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-------------------------------
Confidence 2356788999999999998874 58999999988766544 321
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCC-Cccccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQS-GISRGSYL 241 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~~-~~~~~~~~ 241 (685)
.....+.+.|++ ..+++.+.+|.+.+|++.. +.......
T Consensus 151 ---------------------------------------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~ 191 (361)
T 2oiz_A 151 ---------------------------------------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 191 (361)
T ss_dssp ---------------------------------------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred ---------------------------------------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence 011123445544 4556666777777777654 33221100
Q ss_pred cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceE--EEeec-----------CCceeEEEEeecCCEE
Q 005656 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRWEV-----------GCSLVKIVYHRVNGLL 308 (685)
Q Consensus 242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~-----------~~~i~~~~~~~~~~~l 308 (685)
. ......+..++ .+.+.+++..++..+.++.|.++|+...... ..+.. ......++++|+++.+
T Consensus 192 ~--~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l 268 (361)
T 2oiz_A 192 S--KQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM 268 (361)
T ss_dssp C--CCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred c--cceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence 0 00000112221 2233566777777788999999999755422 22211 0112237899998877
Q ss_pred EEEeC-----------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--ceeeEE-e
Q 005656 309 ATVAD-----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA--RQIDAI-H 374 (685)
Q Consensus 309 ~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~--~~i~~~-~ 374 (685)
+++.. .+.|.+||+.+++.+.++..+. +.+++|+|||++|++++. ++|.+||..++ +.+..+ .
T Consensus 269 yv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 269 YVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG 345 (361)
T ss_dssp EEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred EEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence 77653 3589999999999999999887 999999999999998887 99999999999 998887 4
Q ss_pred eccceEEEEEcCCCC
Q 005656 375 VDVSITALSLSPNMD 389 (685)
Q Consensus 375 ~~~~v~~v~~spdg~ 389 (685)
.......++++|+|.
T Consensus 346 ~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 346 AAEASLQVQFHPVGG 360 (361)
T ss_dssp SCSSEEEEEECCCSC
T ss_pred CCCCcEEEEecCCCC
Confidence 555689999999986
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=1.5e-20 Score=196.58 Aligned_cols=295 Identities=10% Similarity=0.023 Sum_probs=186.1
Q ss_pred EEEccCCCCEEEEEeC-CC--cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 8 LAFSSDGQPLLASGAS-SG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 8 l~fspdg~~~latg~~-dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
.+|||||+ .|+.++. +| .|.+||+.+++...... +|...+.++.|+|||+.|+.++.++.|++||+.++ +.
T Consensus 41 ~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g----~~ 114 (388)
T 3pe7_A 41 KCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL----EE 114 (388)
T ss_dssp CCBCTTSC-EEEEEECTTSSCEEEEEETTTCEEEECCC-SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC----CE
T ss_pred ccCCCCCC-EEEEEEcCCCCceEEEEeCCCCceEEeee-CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC----cc
Confidence 78999999 6666665 66 48889999998877765 67777778899999999999999999999998876 33
Q ss_pred eEecccCCCCCeEEE--EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 85 LRFRSGHSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
......+...+.... ++|++++++....++ .. ....... ......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~---------~~-~~~~~~~--~~~~~~--------------------- 161 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRR---------ED-WVPLTDW--KKFHEF--------------------- 161 (388)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEG---------GG-CCCCCSH--HHHHHH---------------------
T ss_pred eeeeechhhcccccceeECCCCCeeccccccC---------cc-ccccccc--chhhhh---------------------
Confidence 323334444443333 478888776422110 00 0000000 000000
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecC------CcEEEEECCCCc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAG------GWIERFNLQSGI 235 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d------g~i~~~d~~~~~ 235 (685)
........+++|++......... .+...+..++|+| +|+.++....+ ..|+++|...+.
T Consensus 162 ---------~~~~~~~~l~~~d~~~g~~~~l~-----~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 162 ---------YFTKPCCRLMRVDLKTGESTVIL-----QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp ---------GGGCCCEEEEEEETTTCCEEEEE-----EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred ---------hccCCcceEEEEECCCCceEEee-----cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 00001133444554433211111 2345678999999 99999887764 378888887665
Q ss_pred cccccccccccccCCCC--cCEEEEEEcCCCCEEEEEEC-CC----eEEEEECCCCceEEEeecCC------ceeEEEEe
Q 005656 236 SRGSYLDMSERSNYAHN--GEVVGVACDSTNTLMISAGY-HG----DIKVWDFKGRDLKSRWEVGC------SLVKIVYH 302 (685)
Q Consensus 236 ~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~s~-dg----~i~iwd~~~~~~~~~~~~~~------~i~~~~~~ 302 (685)
..... .+. ..+..++|+|+|+.|+..+. ++ .|++||+.+++......... ......|+
T Consensus 228 ~~~l~---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~s 298 (388)
T 3pe7_A 228 MRKVK---------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMV 298 (388)
T ss_dssp CEESC---------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEE
T ss_pred eEEee---------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEc
Confidence 43322 232 35788999999997766543 22 39999999887544333222 01223799
Q ss_pred ecCCEEEEE---------eCCCeEEEEEcCCCeeEEEEecCCC-----------CeEEEEEcCCCCEEEEEe-CCCcEEE
Q 005656 303 RVNGLLATV---------ADDLVIRLFDVVALRMVRKFEGHTD-----------RITDFCFSEDGKWLLSSG-MDGSLRI 361 (685)
Q Consensus 303 ~~~~~l~~~---------~~dg~I~i~d~~~~~~~~~~~~h~~-----------~I~~l~~spdg~~l~s~s-~Dg~I~i 361 (685)
|+|+.|+.. ..+..|++||+.+++. ..+..|.. .+..++|+|||++|+.++ .+|...+
T Consensus 299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l 377 (388)
T 3pe7_A 299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPAL 377 (388)
T ss_dssp EEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred cCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeE
Confidence 999977754 4566999999998875 45555665 578899999999888666 5676666
Q ss_pred EEcC
Q 005656 362 WDVI 365 (685)
Q Consensus 362 wd~~ 365 (685)
|.+.
T Consensus 378 ~~~~ 381 (388)
T 3pe7_A 378 YLAT 381 (388)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=1.9e-19 Score=186.43 Aligned_cols=275 Identities=15% Similarity=0.158 Sum_probs=187.1
Q ss_pred EEEecC--CCcEEEEEecCCCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee-cCceeeEechhhHH
Q 005656 61 LMSASA--DNSIKMWIFDTTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI-QDQQSRELSQRHVA 136 (685)
Q Consensus 61 l~s~s~--D~~v~iWd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~ 136 (685)
++.|+. ++.|.+|+++...+....+... .+....+..++|+|+|++|++++.+ .|.+|++. +++.......
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~---- 79 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH---- 79 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE----
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe----
Confidence 444443 2578888887654433333222 1344578899999999999999888 99999986 5543221100
Q ss_pred HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656 137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 216 (685)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 216 (685)
...+.+.+++++|+|++
T Consensus 80 ---------------------------------------------------------------~~~g~~~~~~~spdg~~ 96 (365)
T 1jof_A 80 ---------------------------------------------------------------PIGGHPRANDADTNTRA 96 (365)
T ss_dssp ---------------------------------------------------------------ECCSSGGGGCTTSCCEE
T ss_pred ---------------------------------------------------------------ecCCCCccEEECCCCCE
Confidence 00011334788999995
Q ss_pred --EEEEe-------------cCCcEEEEECC-CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CCeEEEE
Q 005656 217 --AVLGT-------------AGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVW 279 (685)
Q Consensus 217 --l~~g~-------------~dg~i~~~d~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iw 279 (685)
++++. .+|.+.+|++. .+.....+.. ....+...+.+++|+|+|+++++++. ++.|++|
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 97 IFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN----YEYQENTGIHGMVFDPTETYLYSADLTANKLWTH 172 (365)
T ss_dssp EEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE----EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee----EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence 44443 68999999997 4544322210 00124567899999999998887764 6899999
Q ss_pred ECC-CCceE--EEee---cCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC--CCeeE---EEEe-------cCCC----
Q 005656 280 DFK-GRDLK--SRWE---VGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV--ALRMV---RKFE-------GHTD---- 336 (685)
Q Consensus 280 d~~-~~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~--~~~~~---~~~~-------~h~~---- 336 (685)
++. +++.. ..+. +...+..++|+|+|+++++++. ++.|.+|++. +++.. ..+. +|..
T Consensus 173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (365)
T 1jof_A 173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK 252 (365)
T ss_dssp EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccc
Confidence 998 67653 2333 2456889999999998888775 6899999875 56542 2222 1222
Q ss_pred --CeEEEE-EcCCCCEEEEEeCC-C-----cEEEEEcC-CCceeeE---Eee-ccceEEEEEcC---CCCeEEEEEeCCC
Q 005656 337 --RITDFC-FSEDGKWLLSSGMD-G-----SLRIWDVI-LARQIDA---IHV-DVSITALSLSP---NMDVLATAHVDQN 399 (685)
Q Consensus 337 --~I~~l~-~spdg~~l~s~s~D-g-----~I~iwd~~-~~~~i~~---~~~-~~~v~~v~~sp---dg~~Lat~~~d~~ 399 (685)
.+..++ |+|||++|++++.+ + +|.+|++. +++.... +.. ...+..++|+| ||++|++++.+++
T Consensus 253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence 588999 99999998876543 2 89999996 6765442 222 23477899999 8999999988766
Q ss_pred eEEEEEcC
Q 005656 400 GVYLWVNR 407 (685)
Q Consensus 400 ~I~lW~~~ 407 (685)
.|.+|+..
T Consensus 333 ~v~v~~~~ 340 (365)
T 1jof_A 333 WLEIYRWK 340 (365)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEc
Confidence 99999854
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=217.23 Aligned_cols=282 Identities=11% Similarity=0.050 Sum_probs=195.8
Q ss_pred eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCC---CCeEEEEecCCCEEEEEeC---------CCceE
Q 005656 50 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFYANGRHILSAGQ---------DRAFR 117 (685)
Q Consensus 50 ~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~s~---------dg~i~ 117 (685)
.+++|+|++.+++++ .|++|++||+.++ +......+|.. .+.+++|+|||++|++++. ++.|+
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETG----QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSC----CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCC----cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 378999999766554 6999999998876 44444444433 4899999999999998876 68899
Q ss_pred EEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecC
Q 005656 118 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 197 (685)
Q Consensus 118 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 197 (685)
+||+.+++.....
T Consensus 94 ~~d~~~g~~~~~~------------------------------------------------------------------- 106 (719)
T 1z68_A 94 IYDLSNGEFVRGN------------------------------------------------------------------- 106 (719)
T ss_dssp EEETTTTEECCSS-------------------------------------------------------------------
T ss_pred EEECCCCccccce-------------------------------------------------------------------
Confidence 9998766431000
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccc-cccCCCC---------cCEEEEEEcCCCCEE
Q 005656 198 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-RSNYAHN---------GEVVGVACDSTNTLM 267 (685)
Q Consensus 198 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~h~---------~~v~~l~~~~~~~~l 267 (685)
.....+..++|||||+.++++. ++.|++|++.++........... ....+|. +...+++|+|+|++|
T Consensus 107 --~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~l 183 (719)
T 1z68_A 107 --ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFL 183 (719)
T ss_dssp --CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEE
T ss_pred --ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEE
Confidence 1123477899999999999885 78999999998876533211000 0000111 112489999999999
Q ss_pred EEEECCC----------------------------------eEEEEECCCCceE--EEe-------ecCCceeEEEEeec
Q 005656 268 ISAGYHG----------------------------------DIKVWDFKGRDLK--SRW-------EVGCSLVKIVYHRV 304 (685)
Q Consensus 268 ~s~s~dg----------------------------------~i~iwd~~~~~~~--~~~-------~~~~~i~~~~~~~~ 304 (685)
++++.|. .|++||+.+++.. ..+ .+...+..++|+||
T Consensus 184 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD 263 (719)
T 1z68_A 184 AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD 263 (719)
T ss_dssp EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS
T ss_pred EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC
Confidence 9988652 7899999987653 111 13356889999999
Q ss_pred CCEEEEEeCC----CeEEEEE----cCCCeeEEEE----ecCCCCeE-----EEEEcCCCCEEEE--EeCCC--cEEEEE
Q 005656 305 NGLLATVADD----LVIRLFD----VVALRMVRKF----EGHTDRIT-----DFCFSEDGKWLLS--SGMDG--SLRIWD 363 (685)
Q Consensus 305 ~~~l~~~~~d----g~I~i~d----~~~~~~~~~~----~~h~~~I~-----~l~~spdg~~l~s--~s~Dg--~I~iwd 363 (685)
++++++.... ..|.+|| +.+++....+ .+|.+.+. .++|+|||+.|+. +..+| .|.+||
T Consensus 264 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~ 343 (719)
T 1z68_A 264 ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIK 343 (719)
T ss_dssp SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEES
T ss_pred CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEE
Confidence 8877775432 3588999 8888766555 46777776 8899999996554 44555 577778
Q ss_pred cCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC----CCeEEEEEcC
Q 005656 364 VILARQIDAIHVDVSITALSLSPNMDVLATAHVD----QNGVYLWVNR 407 (685)
Q Consensus 364 ~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d----~~~I~lW~~~ 407 (685)
+.+++..........+..+.++ +++.|+..+.+ .+.+++|...
T Consensus 344 ~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 344 DTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp SCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 7777643222233347888877 88888887765 3478888754
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=1.4e-19 Score=205.59 Aligned_cols=340 Identities=10% Similarity=0.040 Sum_probs=212.7
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccC-----eeEEEEeCCCcEEEEecCC---------C
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA-----IISLHFFANEPVLMSASAD---------N 68 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~l~s~s~D---------~ 68 (685)
....+++|+|||+ +++++ ||.|++||+.+++....+. +|... ...++|||||++|+.++.+ +
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 3466899999998 88886 8999999999999877776 66533 2448899999999998876 4
Q ss_pred cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656 69 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 148 (685)
Q Consensus 69 ~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (685)
.+.+||+.++ +. ..+..|...+...+|||||+.|+.+. |+.|++|++.++........+...
T Consensus 93 ~~~~~d~~~~----~~-~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~------------ 154 (740)
T 4a5s_A 93 SYDIYDLNKR----QL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED------------ 154 (740)
T ss_dssp EEEEEETTTT----EE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT------------
T ss_pred EEEEEECCCC----cE-EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcc------------
Confidence 5669998876 32 33556778899999999999999885 789999998776533211100000
Q ss_pred cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-----
Q 005656 149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----- 223 (685)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----- 223 (685)
.+. . ...+|. ..+ ........+.|||||+.|+.+..|
T Consensus 155 ----~~~--~----g~~~~v---------------------~~e-------e~~~~~~~~~wSpDg~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 155 ----IIY--N----GITDWV---------------------YEE-------EVFSAYSALWWSPNGTFLAYAQFNDTEVP 196 (740)
T ss_dssp ----TEE--E----SBCCHH---------------------HHH-------HTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred ----cee--c----Cccccc---------------------ccc-------hhcCCCcceEECCCCCEEEEEEEcccCCc
Confidence 000 0 000000 000 000222356777777777766422
Q ss_pred -------------------------------CcEEEEECCC---Ccc--ccccccccccccCCCCcCEEEEEEcCCCCEE
Q 005656 224 -------------------------------GWIERFNLQS---GIS--RGSYLDMSERSNYAHNGEVVGVACDSTNTLM 267 (685)
Q Consensus 224 -------------------------------g~i~~~d~~~---~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 267 (685)
..|++||+.+ +.. ...+.. .....+|...+..++|+|+|+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~wspdg~~~ 274 (740)
T 4a5s_A 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA--PASMLIGDHYLCDVTWATQERIS 274 (740)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC--CHHHHTSCEEEEEEEEEETTEEE
T ss_pred eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC--CccCCCCCeEEEEEEEeCCCeEE
Confidence 1578888888 631 111110 00001377889999999999976
Q ss_pred EEEEC----CCeEEEEECCCCc----eE--EE---eecCCce-----eEEEEeecCCEEE-EEeC-C--CeEEEEEcCCC
Q 005656 268 ISAGY----HGDIKVWDFKGRD----LK--SR---WEVGCSL-----VKIVYHRVNGLLA-TVAD-D--LVIRLFDVVAL 325 (685)
Q Consensus 268 ~s~s~----dg~i~iwd~~~~~----~~--~~---~~~~~~i-----~~~~~~~~~~~l~-~~~~-d--g~I~i~d~~~~ 325 (685)
+.... +..|++||+.+++ +. .. -.+...+ ....|+|||+.++ ..+. + ..|++||+.++
T Consensus 275 ~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred EEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 65542 3479999999876 21 11 1122333 3688999999776 5553 3 47889999877
Q ss_pred eeEEEEecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEE--EcCCCceeeEEeec-----cceEEEEEcCCCCeEEE
Q 005656 326 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-----GSLRIW--DVILARQIDAIHVD-----VSITALSLSPNMDVLAT 393 (685)
Q Consensus 326 ~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D-----g~I~iw--d~~~~~~i~~~~~~-----~~v~~v~~spdg~~Lat 393 (685)
+..+ +......|..+.. +|++.|+..+.. +...+| ++..+.....+... .....+.|||+|++++.
T Consensus 355 ~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~ 432 (740)
T 4a5s_A 355 DCTF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL 432 (740)
T ss_dssp SCEE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred ceEe-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEE
Confidence 6554 4444556666542 457666644432 334444 55444333233321 34889999999998877
Q ss_pred EEeCC--CeEEEEEc
Q 005656 394 AHVDQ--NGVYLWVN 406 (685)
Q Consensus 394 ~~~d~--~~I~lW~~ 406 (685)
..... ..+++++.
T Consensus 433 ~~s~~~~p~~~l~~~ 447 (740)
T 4a5s_A 433 RCSGPGLPLYTLHSS 447 (740)
T ss_dssp EECSBSSCEEEEEET
T ss_pred EeCCCCCCEEEEEEC
Confidence 66542 24566654
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=7e-19 Score=182.22 Aligned_cols=278 Identities=13% Similarity=0.061 Sum_probs=188.4
Q ss_pred EEEEEeCC--CcEEEEeC--CCCeeeEEee--cccccCeeEEEEeCCCcEEEEecCCCcEEEEEec-CCCCCCceeEecc
Q 005656 17 LLASGASS--GVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFANEPVLMSASADNSIKMWIFD-TTDGDPRLLRFRS 89 (685)
Q Consensus 17 ~latg~~d--g~I~vwd~--~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~-~~~~~~~~~~~~~ 89 (685)
.+++|+.. +.|.+|++ .++++...-. .++...+..++|+|++++|++++.+ .|.+|+++ .+ ++.....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g----~~~~~~~ 78 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT----EIVHEAS 78 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT----EEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC----CEEEeeE
Confidence 46667653 56888765 5666533211 1234578899999999999988887 99999997 43 3322211
Q ss_pred c-CCCCCeEEEEecCCCE--EEEEe-------------CCCceEEEEeec-CceeeEechhhHHHHHhhccccccccccC
Q 005656 90 G-HSAPPLCIRFYANGRH--ILSAG-------------QDRAFRLFSVIQ-DQQSRELSQRHVAKRARKLKMKEEELKLK 152 (685)
Q Consensus 90 ~-h~~~v~~i~~~~~~~~--l~s~s-------------~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (685)
. ..+.+.+++|+|+|++ +++++ .+|++.+|++.. ++....+.
T Consensus 79 ~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~--------------------- 137 (365)
T 1jof_A 79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ--------------------- 137 (365)
T ss_dssp EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE---------------------
T ss_pred eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe---------------------
Confidence 1 1123667899999994 44553 688999999863 33221111
Q ss_pred ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEEC
Q 005656 153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNL 231 (685)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~~~d~ 231 (685)
.+. ......+.+++|+|+|++++++.. ++.|++|++
T Consensus 138 -----------------------------~~~--------------~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~ 174 (365)
T 1jof_A 138 -----------------------------NYE--------------YQENTGIHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp -----------------------------EEE--------------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred -----------------------------eEE--------------eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence 000 023456889999999999887764 679999999
Q ss_pred C-CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CCeEEEEECC--CCceEE---Eee---cC----C---
Q 005656 232 Q-SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFK--GRDLKS---RWE---VG----C--- 294 (685)
Q Consensus 232 ~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~--~~~~~~---~~~---~~----~--- 294 (685)
. +++...... .....|...+..++|+|+|+++++++. ++.|.+|++. ++++.. .+. .+ .
T Consensus 175 ~~~g~~~~~~~----~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 250 (365)
T 1jof_A 175 LASGEVELVGS----VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET 250 (365)
T ss_dssp CTTSCEEEEEE----EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred CCCCCEEEeee----EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccc
Confidence 8 665432110 000124567899999999999888774 7899999875 455431 221 11 1
Q ss_pred ----ceeEEE-EeecCCEEEEEeCC-C-----eEEEEEcC-CCeeEE---EEecCCCCeEEEEEcC---CCCEEEEEeCC
Q 005656 295 ----SLVKIV-YHRVNGLLATVADD-L-----VIRLFDVV-ALRMVR---KFEGHTDRITDFCFSE---DGKWLLSSGMD 356 (685)
Q Consensus 295 ----~i~~~~-~~~~~~~l~~~~~d-g-----~I~i~d~~-~~~~~~---~~~~h~~~I~~l~~sp---dg~~l~s~s~D 356 (685)
.+..++ |+|+|++|+++..+ + .|.+|++. +++... ....+...+..++|+| ||++|++++.+
T Consensus 251 ~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred ccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence 478899 99999988877643 2 89999996 666543 2334555677899999 89999999864
Q ss_pred -CcEEEEEcCCC
Q 005656 357 -GSLRIWDVILA 367 (685)
Q Consensus 357 -g~I~iwd~~~~ 367 (685)
+.|.+|++...
T Consensus 331 ~~~v~v~~~~~~ 342 (365)
T 1jof_A 331 EGWLEIYRWKDE 342 (365)
T ss_dssp SCEEEEEEEETT
T ss_pred CCeEEEEEEchh
Confidence 89999998765
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=2.3e-19 Score=189.60 Aligned_cols=249 Identities=13% Similarity=0.088 Sum_probs=173.0
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-----------eee---EEeecccccCeeEEEEeCCCcEEE----Ee
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKR-----------RLQ---SVIREAHDNAIISLHFFANEPVLM----SA 64 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~-----------~~~---~~~~~~h~~~V~~l~~sp~~~~l~----s~ 64 (685)
..++.+++++++. ++++|+.+| ++||+.... ... ......|.+.|.+++|+|++++|+ ++
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 3578899999998 899998888 899875311 110 001114677899999999999999 88
Q ss_pred cCCCcEEEEEecCCC-------CCCceeEecccCCCCCeEEEEecC-CCEEEEEeCCCceEEEEeecCceeeEechhhHH
Q 005656 65 SADNSIKMWIFDTTD-------GDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 136 (685)
Q Consensus 65 s~D~~v~iWd~~~~~-------~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 136 (685)
+.|++|++||+.... .....+..+.+|...|.+++|+|+ +.+|++++.||+|++||+.++.......
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~----- 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL----- 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-----
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-----
Confidence 999999999987541 111235667789999999999998 8899999999999999998764322111
Q ss_pred HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656 137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 216 (685)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 216 (685)
.+...+.+++|+|+|++
T Consensus 190 ---------------------------------------------------------------~~~~~v~~v~wspdg~~ 206 (434)
T 2oit_A 190 ---------------------------------------------------------------PSTVAVTSVCWSPKGKQ 206 (434)
T ss_dssp ---------------------------------------------------------------CGGGCEEEEEECTTSSC
T ss_pred ---------------------------------------------------------------CCCCceeEEEEcCCCCE
Confidence 34567999999999999
Q ss_pred EEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCC------eEEEEECCCCce---
Q 005656 217 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHG------DIKVWDFKGRDL--- 286 (685)
Q Consensus 217 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg------~i~iwd~~~~~~--- 286 (685)
+++|+.||.|++||++ +.....+.... .....|...|.+++|++++.++++.+ .|| .+++|++.+...
T Consensus 207 lasgs~dg~v~iwd~~-~~~~~~~~~~~-~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~ 284 (434)
T 2oit_A 207 LAVGKQNGTVVQYLPT-LQEKKVIPCPP-FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHP 284 (434)
T ss_dssp EEEEETTSCEEEECTT-CCEEEEECCCT-TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCC
T ss_pred EEEEcCCCcEEEEccC-CcccccccCCc-ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCC
Confidence 9999999999999998 44433332100 00113456899999999887765543 443 389999986421
Q ss_pred --EEEe-ec-----C--CceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 005656 287 --KSRW-EV-----G--CSLVKIVYHRVNGLLATVAD-DLVIRLFDVV 323 (685)
Q Consensus 287 --~~~~-~~-----~--~~i~~~~~~~~~~~l~~~~~-dg~I~i~d~~ 323 (685)
...+ .. . .+...+.+.++.+++++++. .+.|.++...
T Consensus 285 ~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 285 EIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred cceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 1111 11 1 22233444577776666554 4557776643
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=4.7e-20 Score=194.95 Aligned_cols=206 Identities=14% Similarity=0.120 Sum_probs=158.1
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc-------cccccccccccCCCCcCEEEEEEcCCCCEEE----EE
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-------GSYLDMSERSNYAHNGEVVGVACDSTNTLMI----SA 270 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~----s~ 270 (685)
...+..+++++++.++++|+.+| +.+|+....... .............+...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34578999999999999999888 888875421110 0000000001124667899999999999999 77
Q ss_pred ECCCeEEEEECCCC--------ce---EEEee-cCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC
Q 005656 271 GYHGDIKVWDFKGR--------DL---KSRWE-VGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDR 337 (685)
Q Consensus 271 s~dg~i~iwd~~~~--------~~---~~~~~-~~~~i~~~~~~~~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~ 337 (685)
+.|+.|++||+.++ +. ...+. +...|.+++|+|+ +.+|++++.||+|++||++++..+....+|...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999998754 22 22222 3578999999998 789999999999999999999887778889999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec--------cceEEEEEcCCCCeEEEEEeCC------CeEEE
Q 005656 338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--------VSITALSLSPNMDVLATAHVDQ------NGVYL 403 (685)
Q Consensus 338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~--------~~v~~v~~spdg~~Lat~~~d~------~~I~l 403 (685)
|++++|+|+|++|++|+.||+|++||+. ++....+..+ ..|.+++|++++.++++.+... ..+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 6555555322 1599999999998887655332 14899
Q ss_pred EEcCCC
Q 005656 404 WVNRCM 409 (685)
Q Consensus 404 W~~~~~ 409 (685)
|+.+..
T Consensus 274 ~~l~~~ 279 (434)
T 2oit_A 274 ALLPKK 279 (434)
T ss_dssp EECCCT
T ss_pred EEeccC
Confidence 987643
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=8.1e-20 Score=191.44 Aligned_cols=312 Identities=10% Similarity=0.018 Sum_probs=200.2
Q ss_pred EEEeCCCCeeeEEeecccccC-----eeEEEEeCCCcEEEEecC-CC--cEEEEEecCCCCCCceeEecccCCCCCeEEE
Q 005656 28 SIWNLEKRRLQSVIREAHDNA-----IISLHFFANEPVLMSASA-DN--SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 99 (685)
Q Consensus 28 ~vwd~~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~l~s~s~-D~--~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~ 99 (685)
..+|..++..+..+. .+... +.+++|+|||++|+.++. ++ .|.+|++..+ +......++......+.
T Consensus 13 ~~~d~~~g~~~~~l~-~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~----~~~~l~~~~~~~~~~~~ 87 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLT-PTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ----QAVQLTEGKGDNTFGGF 87 (396)
T ss_dssp EEECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT----EEEECCCSSCBCTTTCE
T ss_pred eeecCCCCcceEEEe-cCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCC----cEEEeecCCCCccccce
Confidence 455788887777765 44333 788999999998877654 33 5666666544 33333333333344478
Q ss_pred EecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCce
Q 005656 100 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 179 (685)
Q Consensus 100 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (685)
|+|||++|+.++.++.|++|++.+++.......... ... +.. .+........
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~---------------------~~~------~g~-~l~~~~~~~~ 139 (396)
T 3c5m_A 88 ISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE---------------------WKG------YGT-WVANSDCTKL 139 (396)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT---------------------EEE------EEE-EEECTTSSEE
T ss_pred ECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc---------------------cCC------CCC-EEEeccCCcc
Confidence 999999999999999999999877654333211000 000 000 0000000001
Q ss_pred EEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-----ecCCcEEEEECCCCccccccccccccccCCCCcC
Q 005656 180 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-----TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 254 (685)
Q Consensus 180 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~ 254 (685)
..+|. ..+.++|+++.++++ ..++.|++||+.++...... .+...
T Consensus 140 ~~~~~---------------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~---------~~~~~ 189 (396)
T 3c5m_A 140 VGIEI---------------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH---------QDTAW 189 (396)
T ss_dssp EEEEE---------------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE---------EESSC
T ss_pred ccccc---------------------cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec---------cCCcc
Confidence 11111 113467888877665 35668999999988755433 45667
Q ss_pred EEEEEEcC-CCCEEEEEECC------CeEEEEECCCCceEEEeec--CCceeEEEEeecCCEEEEEeCC-----CeEEEE
Q 005656 255 VVGVACDS-TNTLMISAGYH------GDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADD-----LVIRLF 320 (685)
Q Consensus 255 v~~l~~~~-~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d-----g~I~i~ 320 (685)
+..+.|+| +++.++.++.+ ..|.+||+.+++....... ...+..+.|+|+|+.|+.++.+ +.|++|
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA 269 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence 89999999 78877766543 3688999877654443332 2357789999999977776543 459999
Q ss_pred EcCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEe----------------CCCcEEEEEcCCCceeeEEeecc------
Q 005656 321 DVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSG----------------MDGSLRIWDVILARQIDAIHVDV------ 377 (685)
Q Consensus 321 d~~~~~~~~~~~~h~~~I~~l~~sp-dg~~l~s~s----------------~Dg~I~iwd~~~~~~i~~~~~~~------ 377 (685)
|+.+++...... ... .. +.|+| ||+++++++ .++.|++||+.+++.........
T Consensus 270 d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 346 (396)
T 3c5m_A 270 NPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLD 346 (396)
T ss_dssp CTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBT
T ss_pred ECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccc
Confidence 999886544332 222 33 89999 999888765 34789999998887644333332
Q ss_pred -----ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 378 -----SITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 378 -----~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
.+..++|+|||+.|+.++.+.+...||.
T Consensus 347 ~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 347 GDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp TBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 2567899999999998887655566664
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=1.3e-19 Score=189.98 Aligned_cols=298 Identities=10% Similarity=0.022 Sum_probs=191.6
Q ss_pred EEEEEEccCCCCEEEEEe-CC--CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCC
Q 005656 5 VTALAFSSDGQPLLASGA-SS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 81 (685)
Q Consensus 5 V~~l~fspdg~~~latg~-~d--g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~ 81 (685)
+.+++|||||+ .|+.+. .+ ..|.+||+.+++...... ++......+.|+|||+.|+.++.++.|.+|++..+
T Consensus 38 ~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~--- 112 (396)
T 3c5m_A 38 FYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL--- 112 (396)
T ss_dssp TTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC---
T ss_pred eecCcCCCCCC-EEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceECCCCCEEEEEEcCCcEEEEECCCC---
Confidence 56788999999 555543 33 368889999988665543 34333445889999999999999999999988765
Q ss_pred CceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 82 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 82 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
........+.. |+++|+.|+..+.++...+|..... +.
T Consensus 113 -~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~~~~-----~s------------------------------ 150 (396)
T 3c5m_A 113 -EEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEILKRD-----WQ------------------------------ 150 (396)
T ss_dssp -CEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEEGGG-----CC------------------------------
T ss_pred -CcEEEEecccc------cCCCCCEEEeccCCccccccccccc-----cC------------------------------
Confidence 22222222322 7778888887776666665542000 00
Q ss_pred ccccCCcceEEEE----cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEecC------CcEEEEE
Q 005656 162 IRERDWCNVVTCH----MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAG------GWIERFN 230 (685)
Q Consensus 162 ~~~~~~~~~~~~~----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d------g~i~~~d 230 (685)
++...++... .....+++|++......... .....+..+.|+| +|+.++..+.+ ..|++||
T Consensus 151 ---pdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-----~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (396)
T 3c5m_A 151 ---PLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-----QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVN 222 (396)
T ss_dssp ---CCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-----EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEE
T ss_pred ---CCCcceeeeeeccCCCcceEEEEECCCCcEEeec-----cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEE
Confidence 0000000000 12345667776553322111 2345688999999 88877776554 3688999
Q ss_pred CCCCccccccccccccccCCC--CcCEEEEEEcCCCCEEEEEECC-----CeEEEEECCCCceEEEeecCCceeEEEEee
Q 005656 231 LQSGISRGSYLDMSERSNYAH--NGEVVGVACDSTNTLMISAGYH-----GDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 303 (685)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~i~~~~~~~ 303 (685)
+..+...... .+ ...+..++|+|+|++|+.++.+ +.|++||+.+++......... .. +.|+|
T Consensus 223 ~~~~~~~~l~---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~ 291 (396)
T 3c5m_A 223 EDGSNVRKIK---------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSN 291 (396)
T ss_dssp TTSCCCEESS---------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEEC
T ss_pred CCCCceeEee---------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccC
Confidence 8766533221 22 3358889999999988777644 459999999887655433332 33 89999
Q ss_pred -cCCEEEEEe----------------CCCeEEEEEcCCCeeEEEEecCCC-----------CeEEEEEcCCCCEEEEEeC
Q 005656 304 -VNGLLATVA----------------DDLVIRLFDVVALRMVRKFEGHTD-----------RITDFCFSEDGKWLLSSGM 355 (685)
Q Consensus 304 -~~~~l~~~~----------------~dg~I~i~d~~~~~~~~~~~~h~~-----------~I~~l~~spdg~~l~s~s~ 355 (685)
+|+++++++ .+..|++||+.+++.. .+..+.. .+..++|+|||++|+.++.
T Consensus 292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 999888764 3478999999988753 4555544 2567899999998887764
Q ss_pred -CCcEEEE--EcCCCce
Q 005656 356 -DGSLRIW--DVILARQ 369 (685)
Q Consensus 356 -Dg~I~iw--d~~~~~~ 369 (685)
++...+| ++.++..
T Consensus 371 ~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 371 FEGVPAIYIADVPESYK 387 (396)
T ss_dssp TTSSCEEEEEECCTTCC
T ss_pred CCCCceEEEEEEccccc
Confidence 4554555 4455443
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=7.4e-19 Score=199.67 Aligned_cols=275 Identities=11% Similarity=0.021 Sum_probs=185.8
Q ss_pred ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCC-----CeEEEEecCCCEEEEEeCC-------
Q 005656 46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-----PLCIRFYANGRHILSAGQD------- 113 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~-----v~~i~~~~~~~~l~s~s~d------- 113 (685)
.....++.|+||+.+++++ |++|++|++.++ .....+.+|... ...+.|||||++|+.++.+
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~ 89 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYG----NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS 89 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTC----CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCC----ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEc
Confidence 3456789999999999886 899999999877 344445566533 2347899999999998876
Q ss_pred --CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccC
Q 005656 114 --RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 191 (685)
Q Consensus 114 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 191 (685)
+.+.+||+.+++...
T Consensus 90 ~~~~~~~~d~~~~~~~~--------------------------------------------------------------- 106 (740)
T 4a5s_A 90 YTASYDIYDLNKRQLIT--------------------------------------------------------------- 106 (740)
T ss_dssp EEEEEEEEETTTTEECC---------------------------------------------------------------
T ss_pred cceEEEEEECCCCcEEE---------------------------------------------------------------
Confidence 344577766554221
Q ss_pred ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc-ccccCCCC---------cCEEEEEEc
Q 005656 192 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS-ERSNYAHN---------GEVVGVACD 261 (685)
Q Consensus 192 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~h~---------~~v~~l~~~ 261 (685)
...+...+..++|||||+.++.+ .++.|++|++.++.......... .....++. +...++.|+
T Consensus 107 ------l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS 179 (740)
T 4a5s_A 107 ------EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS 179 (740)
T ss_dssp ------SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred ------cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEEC
Confidence 11445678999999999999888 56899999998887543221100 00000111 122358999
Q ss_pred CCCCEEEEEECCC------------------------------------eEEEEECCC---C---ceEEEee------cC
Q 005656 262 STNTLMISAGYHG------------------------------------DIKVWDFKG---R---DLKSRWE------VG 293 (685)
Q Consensus 262 ~~~~~l~s~s~dg------------------------------------~i~iwd~~~---~---~~~~~~~------~~ 293 (685)
|||+.|+.++.|. +|++||+.+ + +...... +.
T Consensus 180 pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~ 259 (740)
T 4a5s_A 180 PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD 259 (740)
T ss_dssp TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSC
T ss_pred CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCC
Confidence 9999999875321 588899988 7 3333222 34
Q ss_pred CceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCe----eE--EEE--ecCCCCeE-----EEEEcCCCCEEE-EEe-
Q 005656 294 CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALR----MV--RKF--EGHTDRIT-----DFCFSEDGKWLL-SSG- 354 (685)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~----~~--~~~--~~h~~~I~-----~l~~spdg~~l~-s~s- 354 (685)
..+..++|+|||++++.... +..|++||+.+++ +. ..+ .+|...|. ..+|+|||+.|+ ..+
T Consensus 260 ~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~ 339 (740)
T 4a5s_A 260 HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN 339 (740)
T ss_dssp EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC
T ss_pred eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEc
Confidence 56889999999997666543 3479999999887 21 222 45666554 789999999887 665
Q ss_pred CCC--cEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC
Q 005656 355 MDG--SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 355 ~Dg--~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d 397 (685)
.+| .|++||+.++...........|..+.. +|++.|+..+..
T Consensus 340 ~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 340 EEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp TTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred CCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEec
Confidence 333 588899887776655445445666542 446666665543
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=1.1e-18 Score=195.99 Aligned_cols=320 Identities=10% Similarity=-0.007 Sum_probs=205.9
Q ss_pred CCCcEEEEEEccCCCCEEEEE--eCCCcEEEEeCCCCeeeEEeecccccCee---------EEEEe--CCCcE-EEEecC
Q 005656 1 MRGAVTALAFSSDGQPLLASG--ASSGVISIWNLEKRRLQSVIREAHDNAII---------SLHFF--ANEPV-LMSASA 66 (685)
Q Consensus 1 h~~~V~~l~fspdg~~~latg--~~dg~I~vwd~~~~~~~~~~~~~h~~~V~---------~l~~s--p~~~~-l~s~s~ 66 (685)
|...|..++|++++- +++++ +.++...||....+.....+. .|...+. ...|+ |||+. |+.++.
T Consensus 22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcceeC-CCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 567899999998865 66666 557889999865444455555 5666666 66676 99998 776654
Q ss_pred CCcEEEEEecCC--C-CCCceeEeccc-----CCCCCeEEEEecCCCEEEEEeCC----------CceEEEEeec-----
Q 005656 67 DNSIKMWIFDTT--D-GDPRLLRFRSG-----HSAPPLCIRFYANGRHILSAGQD----------RAFRLFSVIQ----- 123 (685)
Q Consensus 67 D~~v~iWd~~~~--~-~~~~~~~~~~~-----h~~~v~~i~~~~~~~~l~s~s~d----------g~i~vwd~~~----- 123 (685)
. ...||.++.. . +..+. +.. |...+.+++|+|||+.|++++.+ ..|++|++.+
T Consensus 100 ~-~~~l~~~~~~~~g~~~~~~---l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 100 G-DQRLYAFEPDAPGGAVPRP---LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp T-TCCEEEECTTSTTCCCCEE---CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred C-CCeEEEEcCCCCCCCCCEe---ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 2 4455555543 1 22222 223 66778899999999999998876 4677777654
Q ss_pred -CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656 124 -DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 202 (685)
Q Consensus 124 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 202 (685)
+.. ..+. ..+.
T Consensus 176 ~~~~-~~l~-------------------------------------------------------------------~~~~ 187 (662)
T 3azo_A 176 RSAV-RELS-------------------------------------------------------------------DDAH 187 (662)
T ss_dssp GGGS-EESS-------------------------------------------------------------------CSCS
T ss_pred CCce-eEEE-------------------------------------------------------------------ecCC
Confidence 221 1110 0123
Q ss_pred CCeEEEEEccCCCEEEEEecC--------CcEEEEECC-CC---ccccccccccccccCCCCcCEEEEEEcCCCCEEEEE
Q 005656 203 TAVKACTISACGNFAVLGTAG--------GWIERFNLQ-SG---ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 270 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~d--------g~i~~~d~~-~~---~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 270 (685)
..+..++|||||++|+.++.+ ..|++||+. ++ ...... ..|...+..+.|+|+|++++++
T Consensus 188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--------~~~~~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--------GGPEEAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--------EETTBCEEEEEECTTSCEEEEE
T ss_pred CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--------CCCCceEcceEECCCCeEEEEE
Confidence 456678999999999988755 379999998 56 222221 1457889999999999977888
Q ss_pred ECCC--eEEEEECCCCceEEEeecCCc---------eeEEEEeecCCEEEEEeCCCeEEEE--EcCCCeeEEEEecCCCC
Q 005656 271 GYHG--DIKVWDFKGRDLKSRWEVGCS---------LVKIVYHRVNGLLATVADDLVIRLF--DVVALRMVRKFEGHTDR 337 (685)
Q Consensus 271 s~dg--~i~iwd~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~dg~I~i~--d~~~~~~~~~~~~h~~~ 337 (685)
+.++ .|.+||..+++.......+.. +..++|+|++++++++.. +.++|| |+.+++ ++.+..|...
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~ 337 (662)
T 3azo_A 260 DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTE 337 (662)
T ss_dssp CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCE
T ss_pred CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCe
Confidence 7888 677777767766554443322 467889999999999998 988888 555565 6778888887
Q ss_pred eEEE-EEcCCCCEEEEEeCCC--cEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 338 ITDF-CFSEDGKWLLSSGMDG--SLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 338 I~~l-~~spdg~~l~s~s~Dg--~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+..+ +++++.-++++++.+. .|.+||+.+++.......+.. +....+++...+.+. +.++..|..|-
T Consensus 338 ~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~dg~~i~~~~ 408 (662)
T 3azo_A 338 WAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFT-APDGREIHAHI 408 (662)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEE-CTTSCEEEEEE
T ss_pred EEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEE-cCCCCEEEEEE
Confidence 8776 4433332334445554 455667767765443333322 222233333333333 23444666664
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.81 E-value=1.6e-16 Score=171.98 Aligned_cols=320 Identities=11% Similarity=0.055 Sum_probs=226.3
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEec--CCCCCCceeEecccCCCC
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD--TTDGDPRLLRFRSGHSAP 94 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~--~~~~~~~~~~~~~~h~~~ 94 (685)
++++...++.|.+||..+++.+..+.. ...+.++.|+|||+++++++.|+.|.+||+. +. +.+..+.. ...
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~----~~v~~i~~-G~~ 241 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP----TTVAEIKI-GSE 241 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC----CEEEEEEC-CSE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC----cEeEEEec-CCC
Confidence 677777899999999999999988873 3357799999999999999999999999985 33 44444433 234
Q ss_pred CeEEEEe----cCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcc
Q 005656 95 PLCIRFY----ANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 169 (685)
Q Consensus 95 v~~i~~~----~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (685)
+..++|+ |||+++++++. ++++.++|..+.+....+......
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~--------------------------------- 288 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT--------------------------------- 288 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC---------------------------------
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc---------------------------------
Confidence 6899999 69999888765 589999998887766555311000
Q ss_pred eEEEEcCCceEEEEEcCccccCceeecCCCCC-CCCeEEEEEccCCCEEE-EEecCCcEEEEECCCCccccccccccccc
Q 005656 170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN-PTAVKACTISACGNFAV-LGTAGGWIERFNLQSGISRGSYLDMSERS 247 (685)
Q Consensus 170 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~-~g~~dg~i~~~d~~~~~~~~~~~~~~~~~ 247 (685)
......+ ...+..+..++++..++ ....+|.|.++|..+........
T Consensus 289 -------------------------~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~------ 337 (567)
T 1qks_A 289 -------------------------YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE------ 337 (567)
T ss_dssp -------------------------TTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE------
T ss_pred -------------------------cccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee------
Confidence 0000001 12567788888766544 44566999999987654221110
Q ss_pred cCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeec-C---CceeEEE-EeecCCEE-EEEe-CCCeEEE
Q 005656 248 NYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV-G---CSLVKIV-YHRVNGLL-ATVA-DDLVIRL 319 (685)
Q Consensus 248 ~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~---~~i~~~~-~~~~~~~l-~~~~-~dg~I~i 319 (685)
........++.|+|++++++++. .++.|.++|+.++++...+.. . .+-.... ++|++..+ +++. .++.|.+
T Consensus 338 -i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsv 416 (567)
T 1qks_A 338 -ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVAL 416 (567)
T ss_dssp -EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred -eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEE
Confidence 02334566889999999887766 678999999999998877765 2 1111222 57875544 4443 4689999
Q ss_pred EEcCC-------CeeEEEEecCCCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCC-----c-eeeEEee----
Q 005656 320 FDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGM-------DGSLRIWDVILA-----R-QIDAIHV---- 375 (685)
Q Consensus 320 ~d~~~-------~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~-------Dg~I~iwd~~~~-----~-~i~~~~~---- 375 (685)
+|..+ .+.++++......-..+..+|++++|.+... .++|.++|+.+. . ....+..
T Consensus 417 id~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~ 496 (567)
T 1qks_A 417 IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA 496 (567)
T ss_dssp EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred ecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence 99988 7788988865444456789999999988763 358999999877 2 1233321
Q ss_pred -----ccceEEEEEcCCCCeEEEEEe----CCCeEEEEEcCC
Q 005656 376 -----DVSITALSLSPNMDVLATAHV----DQNGVYLWVNRC 408 (685)
Q Consensus 376 -----~~~v~~v~~spdg~~Lat~~~----d~~~I~lW~~~~ 408 (685)
...+..+.|+|+|+++.++.. +.+.|.|+|.+.
T Consensus 497 ~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 497 GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 335899999999999888854 245899998654
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=4.8e-17 Score=165.70 Aligned_cols=250 Identities=14% Similarity=0.144 Sum_probs=183.3
Q ss_pred CcEEEEEEccCCCCEEEEEeCC------------------------CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASS------------------------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANE 58 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~d------------------------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~ 58 (685)
+.|.+++|+|+|+ ++++...+ +.|.+||..+++.......++-.....++++|+|
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 5689999999998 88877766 4799999999988776654566688999999999
Q ss_pred cEEEEecCCCcEEEEEecCCCCCCceeEec---------ccCCCCCeEEEEec-CCCEEEEEe-CCCceEEEEeecCcee
Q 005656 59 PVLMSASADNSIKMWIFDTTDGDPRLLRFR---------SGHSAPPLCIRFYA-NGRHILSAG-QDRAFRLFSVIQDQQS 127 (685)
Q Consensus 59 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~---------~~h~~~v~~i~~~~-~~~~l~s~s-~dg~i~vwd~~~~~~~ 127 (685)
+++++...++.|++|+.+... ..+..+ .++-..+..++++| ++..+++.+ .++.|++|+. ++...
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~---~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~ 178 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKE---GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFV 178 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSS---CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEE
T ss_pred CEEEEECCCCEEEEEeCCCCe---EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEE
Confidence 999999889999999865331 123322 24455688999999 677777765 5888888873 33222
Q ss_pred eEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEE
Q 005656 128 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA 207 (685)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~ 207 (685)
..+..
T Consensus 179 ~~~~~--------------------------------------------------------------------------- 183 (329)
T 3fvz_A 179 TQWGE--------------------------------------------------------------------------- 183 (329)
T ss_dssp EEECE---------------------------------------------------------------------------
T ss_pred EEecc---------------------------------------------------------------------------
Confidence 21110
Q ss_pred EEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEECCCeEEEEECCCCce
Q 005656 208 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDL 286 (685)
Q Consensus 208 ~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~ 286 (685)
...+ .. ...++-....+++++|+ +.++++...++.|++||..+++.
T Consensus 184 -------------~g~~----------~~----------~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~ 230 (329)
T 3fvz_A 184 -------------ESSG----------SS----------PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF 230 (329)
T ss_dssp -------------ECCS----------SS----------CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE
T ss_pred -------------CCCC----------CC----------CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE
Confidence 0000 00 00023345789999998 66667777889999999998888
Q ss_pred EEEeec---CCceeEEEEeecCCEEEE-------EeCCCeEEEEEcCCCeeEEEEe---cCCCCeEEEEEcCCCCEEEEE
Q 005656 287 KSRWEV---GCSLVKIVYHRVNGLLAT-------VADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 287 ~~~~~~---~~~i~~~~~~~~~~~l~~-------~~~dg~I~i~d~~~~~~~~~~~---~h~~~I~~l~~spdg~~l~s~ 353 (685)
+..+.. ...+..++++| +..+++ ...+..|++||..+++.+..+. ++...+.+++++|+|.++++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 231 VREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGD 309 (329)
T ss_dssp EEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred EEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence 887753 35678889998 333333 3345589999999999998884 677789999999999888888
Q ss_pred eCCCcEEEEEcCC
Q 005656 354 GMDGSLRIWDVIL 366 (685)
Q Consensus 354 s~Dg~I~iwd~~~ 366 (685)
..++.|++|++..
T Consensus 310 ~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 310 AHTNTVWKFTLTE 322 (329)
T ss_dssp SSSCCEEEEEEEE
T ss_pred CCCCEEEEEeCCc
Confidence 8999999999754
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1.1e-16 Score=164.94 Aligned_cols=270 Identities=12% Similarity=0.098 Sum_probs=187.5
Q ss_pred EEEEccCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEeecc-----cccCeeEEEEeCCCcEEEEecC--CCc
Q 005656 7 ALAFSSDGQPLLASGA----------SSGVISIWNLEKRRLQSVIREA-----HDNAIISLHFFANEPVLMSASA--DNS 69 (685)
Q Consensus 7 ~l~fspdg~~~latg~----------~dg~I~vwd~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~l~s~s~--D~~ 69 (685)
.++|+|||+ ++++++ .++.|.+||..+++.+..+... +......++|+|||++|+++.. +++
T Consensus 54 ~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE
T ss_pred ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe
Confidence 789999999 666664 3567999999999888887622 2345778999999999988763 689
Q ss_pred EEEEEecCCCCCCceeEe-cccCCCCCeEEEEecCC-CEEEEEeCCCceEEEEeec-CceeeEechhhHHHHHhhccccc
Q 005656 70 IKMWIFDTTDGDPRLLRF-RSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQ-DQQSRELSQRHVAKRARKLKMKE 146 (685)
Q Consensus 70 v~iWd~~~~~~~~~~~~~-~~~h~~~v~~i~~~~~~-~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 146 (685)
|.+||+.+. +.+.. +.. .. ...+.+.|++ ..+++.+.||.+.+|++.. ++.......
T Consensus 133 v~v~d~~~~----~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-------------- 192 (361)
T 2oiz_A 133 IGIVDVAKG----DYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-------------- 192 (361)
T ss_dssp EEEEETTTT----EEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC--------------
T ss_pred EEEEECCCC----cEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc--------------
Confidence 999999876 55555 432 11 2335677875 6778889999999998864 322111000
Q ss_pred cccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 005656 147 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 226 (685)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 226 (685)
..+|+ .... ...+.+++++..++..+.+|.+
T Consensus 193 ---------------------------------~~~~~---------------~~~~-~~~~~~~~~g~~~~~~~~~~~v 223 (361)
T 2oiz_A 193 ---------------------------------KQMFS---------------VKDD-PIFIAPALDKDKAHFVSYYGNV 223 (361)
T ss_dssp ---------------------------------CCCSC---------------TTTS-CBCSCCEECSSEEEEEBTTSEE
T ss_pred ---------------------------------cceEc---------------CCCC-ceEEEecccCCEEEEEeCCCeE
Confidence 00000 0001 1122235667777777788999
Q ss_pred EEEECCCCcccc--cccccc--ccccCCCCcCEEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCceEEEee
Q 005656 227 ERFNLQSGISRG--SYLDMS--ERSNYAHNGEVVGVACDSTNTLMISAGY-----------HGDIKVWDFKGRDLKSRWE 291 (685)
Q Consensus 227 ~~~d~~~~~~~~--~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~ 291 (685)
+++|+..+.... .+.... .............++++|+++.++++.. .+.|.+||+.+++.+..+.
T Consensus 224 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~ 303 (361)
T 2oiz_A 224 YSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP 303 (361)
T ss_dssp EEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe
Confidence 999987654221 110000 0000000111123688999887776643 3589999999999999998
Q ss_pred cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC--eeEEEEecCCCCeEEEEEcCCCC
Q 005656 292 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--RMVRKFEGHTDRITDFCFSEDGK 348 (685)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~spdg~ 348 (685)
.+. +..++|+|+|++|++++. +.|.+||..++ +.+.++..+......++++|+|+
T Consensus 304 ~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 304 GRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 888 999999999999998887 99999999999 99999877778889999999986
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=1.2e-16 Score=163.04 Aligned_cols=270 Identities=11% Similarity=0.054 Sum_probs=196.5
Q ss_pred ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCc
Q 005656 46 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 125 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~ 125 (685)
...|.++.|++++..++..+.++.++.|. . .....+..+...+.+++|+++|+.++++..++.|.+||..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTIT---A----EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C----EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred ccccceeeecCCccceeEEeecccCcccc---c----ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc
Confidence 34578899999988888888899999992 2 3444555677778999999999977788888999999886654
Q ss_pred eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656 126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 205 (685)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 205 (685)
...... .....+
T Consensus 78 ~~~~~~--------------------------------------------------------------------~~~~~~ 89 (333)
T 2dg1_A 78 IKRPFV--------------------------------------------------------------------SHKANP 89 (333)
T ss_dssp EEEEEE--------------------------------------------------------------------CSSSSE
T ss_pred EEEEee--------------------------------------------------------------------CCCCCc
Confidence 322110 123568
Q ss_pred EEEEEccCCCEEEEEecC----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC------CCe
Q 005656 206 KACTISACGNFAVLGTAG----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY------HGD 275 (685)
Q Consensus 206 ~~~~~s~~g~~l~~g~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~------dg~ 275 (685)
.+++++++|+.++++..+ +.|.+||..++.....+.. ..+...+.+++++|+|+++++... .+.
T Consensus 90 ~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 90 AAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp EEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred ceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc------CccCCcccceEECCCCCEEEEeccccccCCCce
Confidence 899999999988777666 6899999988765422210 134467899999999987776653 356
Q ss_pred EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCC-CeeEEE--------EecCCCCeEEEEEcC
Q 005656 276 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVA-LRMVRK--------FEGHTDRITDFCFSE 345 (685)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~-~~~~~~--------~~~h~~~I~~l~~sp 345 (685)
|..||..+++..........+..++++|+++.++++ ..++.|++||+.+ +..+.. +.++ ..+..+++++
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~ 242 (333)
T 2dg1_A 164 VYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS 242 (333)
T ss_dssp EEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT
T ss_pred EEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC
Confidence 777776665554433333567889999999865544 5678999999963 332221 1222 4678899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-------ceEEEEEcCCCCeEEEEEeCC
Q 005656 346 DGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 346 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-------~v~~v~~spdg~~Lat~~~d~ 398 (685)
+|+++++...++.|.+||. .++.+..+..+. .+.+++|+||++.|++++.++
T Consensus 243 ~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 243 DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 9998888878899999997 577777776543 489999999998888777663
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=7.3e-17 Score=164.73 Aligned_cols=270 Identities=11% Similarity=0.020 Sum_probs=191.9
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
+.|.+++|++++. .++..+.++.++.| .++....+. .+...+.+++|+|++++++++..++.|.+|+.+.+
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~---- 76 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTI---TAEPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK---- 76 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEE---ECEEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC----
T ss_pred cccceeeecCCcc-ceeEEeecccCccc---ccceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC----
Confidence 5688899999987 56666778899999 455566665 66677899999999998888888999999987654
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCC----CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
+.......+...+.+++|+|+|+.+++...+ +.|.+||..++.....+..
T Consensus 77 ~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------------------- 130 (333)
T 2dg1_A 77 EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-------------------------- 130 (333)
T ss_dssp CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS--------------------------
T ss_pred cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc--------------------------
Confidence 3333222456789999999999877776666 6788888765543211100
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec------CCcEEEEECC
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA------GGWIERFNLQ 232 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------dg~i~~~d~~ 232 (685)
......+..++++|+|+.+++... .+.|+.||..
T Consensus 131 ----------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~ 170 (333)
T 2dg1_A 131 ----------------------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD 170 (333)
T ss_dssp ----------------------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred ----------------------------------------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC
Confidence 012346889999999987776553 3567777776
Q ss_pred CCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCCeEEEEECCC-CceEEE--------eecCCceeEEEEe
Q 005656 233 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKG-RDLKSR--------WEVGCSLVKIVYH 302 (685)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~-~~~~~~--------~~~~~~i~~~~~~ 302 (685)
++...... .+...+.+++|+|+++.++.+ +.++.|.+||+.+ +..... +.....+..++++
T Consensus 171 ~~~~~~~~---------~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d 241 (333)
T 2dg1_A 171 FRTVTPII---------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 241 (333)
T ss_dssp SCCEEEEE---------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred CCEEEEee---------cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence 55443221 223457899999999866544 4678999999963 332211 1112367889999
Q ss_pred ecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCC------CeEEEEEcCCCCEEEEEeCCC
Q 005656 303 RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD------RITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 303 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~------~I~~l~~spdg~~l~s~s~Dg 357 (685)
++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.++
T Consensus 242 ~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 242 SDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 99998888878899999998 5667777765433 689999999988777665553
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=9.3e-17 Score=180.40 Aligned_cols=271 Identities=8% Similarity=-0.033 Sum_probs=183.0
Q ss_pred ccccCeeEEEEeCCCcEEEEe--cCCCcEEEEEecCCCCCCceeEecccCCCCCe---------EEEEe--cCCCE-EEE
Q 005656 44 AHDNAIISLHFFANEPVLMSA--SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL---------CIRFY--ANGRH-ILS 109 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~--s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~---------~i~~~--~~~~~-l~s 109 (685)
+|...+..++|++++-++++. +.++...||....+ + ....+..|...+. ...|+ |||+. |+.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-G---AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT-S---CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC-C---CcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 788999999999887777777 66889999987433 2 2344455665555 56666 99998 776
Q ss_pred EeC-CCceEEEEee--cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcC
Q 005656 110 AGQ-DRAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 186 (685)
Q Consensus 110 ~s~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 186 (685)
++. +..|.+|++. .......+...
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~----------------------------------------------------- 123 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPV----------------------------------------------------- 123 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCC-----------------------------------------------------
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCC-----------------------------------------------------
Confidence 553 3444444432 10222222100
Q ss_pred ccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC----------CcEEEEECCC------CccccccccccccccCC
Q 005656 187 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----------GWIERFNLQS------GISRGSYLDMSERSNYA 250 (685)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----------g~i~~~d~~~------~~~~~~~~~~~~~~~~~ 250 (685)
....+...+..++|+|+|+.|++++.+ ..|++||+.+ +...... ..
T Consensus 124 ----------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~--------~~ 185 (662)
T 3azo_A 124 ----------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS--------DD 185 (662)
T ss_dssp ----------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS--------CS
T ss_pred ----------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE--------ec
Confidence 000134567899999999999998876 5899999987 4432211 03
Q ss_pred CCcCEEEEEEcCCCCEEEEEECC--------CeEEEEECC-CC---ceEEEeec-CCceeEEEEeecCCEEEEEeCCC--
Q 005656 251 HNGEVVGVACDSTNTLMISAGYH--------GDIKVWDFK-GR---DLKSRWEV-GCSLVKIVYHRVNGLLATVADDL-- 315 (685)
Q Consensus 251 h~~~v~~l~~~~~~~~l~s~s~d--------g~i~iwd~~-~~---~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg-- 315 (685)
+...+..++|+|+|++|+.++.+ ..|++||+. ++ +....... ...+..+.|+|||++++++..++
T Consensus 186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~ 265 (662)
T 3azo_A 186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWW 265 (662)
T ss_dssp CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCe
Confidence 34677889999999999988755 379999999 56 44444444 47889999999999888888888
Q ss_pred eEEEEEcCCCeeEEEEecCCCC--------eEEEEEcCCCCEEEEEeCCCcEEEE--EcCCCceeeEEeeccc-eEEEEE
Q 005656 316 VIRLFDVVALRMVRKFEGHTDR--------ITDFCFSEDGKWLLSSGMDGSLRIW--DVILARQIDAIHVDVS-ITALSL 384 (685)
Q Consensus 316 ~I~i~d~~~~~~~~~~~~h~~~--------I~~l~~spdg~~l~s~s~Dg~I~iw--d~~~~~~i~~~~~~~~-v~~v~~ 384 (685)
.|++||+.+++......++... +..++|+|+++++++++. +.+++| |+.+++ +..+..+.. +.++ |
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~ 342 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-L 342 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-E
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-E
Confidence 6777777677655444433322 567899999999999998 999999 555555 555554443 6666 1
Q ss_pred cCCCCeEE
Q 005656 385 SPNMDVLA 392 (685)
Q Consensus 385 spdg~~La 392 (685)
+++++.++
T Consensus 343 s~~~~~~~ 350 (662)
T 3azo_A 343 TVSGTRAV 350 (662)
T ss_dssp EEETTEEE
T ss_pred ecCCCEEE
Confidence 44554333
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=5.2e-16 Score=154.64 Aligned_cols=242 Identities=12% Similarity=0.152 Sum_probs=177.3
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc------cCCCCCeEEEEe-cCCCEEEEEeC-CCc
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS------GHSAPPLCIRFY-ANGRHILSAGQ-DRA 115 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~------~h~~~v~~i~~~-~~~~~l~s~s~-dg~ 115 (685)
+|-..+.++++++++.++++.+.++.|.+|+.+. ..+..+. +|...+..+++. ++++.+++... ++.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 5567789999999999999888899999998652 2333322 344578899995 66765555533 788
Q ss_pred eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656 116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 195 (685)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 195 (685)
|.+|+ .+++....+..
T Consensus 102 i~~~d-~~g~~~~~~~~--------------------------------------------------------------- 117 (286)
T 1q7f_A 102 IQIYN-QYGQFVRKFGA--------------------------------------------------------------- 117 (286)
T ss_dssp EEEEC-TTSCEEEEECT---------------------------------------------------------------
T ss_pred EEEEC-CCCcEEEEecC---------------------------------------------------------------
Confidence 99998 44443332210
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe
Q 005656 196 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 275 (685)
Q Consensus 196 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~ 275 (685)
.....+..++++++|+.+++...++.|.+||.. +.....+. ...+...+.+++++++++++++...++.
T Consensus 118 ----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~------~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 118 ----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG------CSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp ----TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE------CTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred ----ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeC------CCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 123457899999999988887888999999964 44333331 1134456899999999987777778899
Q ss_pred EEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCC-eEEEEEcCCCeeEEEEecCCC--CeEEEEEcCCCCE
Q 005656 276 IKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDL-VIRLFDVVALRMVRKFEGHTD--RITDFCFSEDGKW 349 (685)
Q Consensus 276 i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~--~I~~l~~spdg~~ 349 (685)
|++||.. ++.+..+... ..+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.+++++|+|++
T Consensus 187 i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l 264 (286)
T 1q7f_A 187 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV 264 (286)
T ss_dssp EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred EEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcE
Confidence 9999975 4555555433 5688999999999888888776 9999995 5667777765543 4789999999987
Q ss_pred EEEEeCCCcEEEEEcCCCc
Q 005656 350 LLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 350 l~s~s~Dg~I~iwd~~~~~ 368 (685)
+++ +.|++|++|++....
T Consensus 265 ~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 265 VLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEE-ETTTEEEEEECSCCC
T ss_pred EEE-CCCCeEEEEEccccc
Confidence 776 679999999986543
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=5.3e-16 Score=154.58 Aligned_cols=241 Identities=13% Similarity=0.185 Sum_probs=178.0
Q ss_pred cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcc
Q 005656 90 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 169 (685)
Q Consensus 90 ~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (685)
++-..+.+++++++++.+++...++.|.+||.. ++....+...
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~------------------------------------ 69 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGEC------------------------------------ 69 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCB------------------------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEeccc------------------------------------
Confidence 556678999999999988888889999999865 3332222100
Q ss_pred eEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE-ccCCCEEEEEec-CCcEEEEECCCCccccccccccccc
Q 005656 170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-SACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERS 247 (685)
Q Consensus 170 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~g~~-dg~i~~~d~~~~~~~~~~~~~~~~~ 247 (685)
.....+...+..+++ .++++.+++... ++.|.+|| .++.....+..
T Consensus 70 --------------------------~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~----- 117 (286)
T 1q7f_A 70 --------------------------GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGA----- 117 (286)
T ss_dssp --------------------------SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECT-----
T ss_pred --------------------------CCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecC-----
Confidence 000023346788999 467776666644 88999999 55655444421
Q ss_pred cCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656 248 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 248 ~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 324 (685)
.+...+.+++++++++++++...++.|.+||.. ++....+.. ...+..++++++|+++++...++.|++||. +
T Consensus 118 --~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 193 (286)
T 1q7f_A 118 --TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-E 193 (286)
T ss_dssp --TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-T
T ss_pred --ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-C
Confidence 344678999999999987777778999999964 555555542 246889999999998888788999999997 4
Q ss_pred CeeEEEEecC--CCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCceeeEEeeccc---eEEEEEcCCCCeEEEEEeCC
Q 005656 325 LRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG-SLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 325 ~~~~~~~~~h--~~~I~~l~~spdg~~l~s~s~Dg-~I~iwd~~~~~~i~~~~~~~~---v~~v~~spdg~~Lat~~~d~ 398 (685)
++.+..+..+ ...+..++++++|+++++...++ .|++|+ .+++.+..+..+.. +.+++++|+|+++++ +.++
T Consensus 194 g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~ 271 (286)
T 1q7f_A 194 GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDY 271 (286)
T ss_dssp CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTT
T ss_pred CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC-CCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCC
Confidence 5666666543 36789999999999888888776 999999 46777777765432 789999999987666 5564
Q ss_pred CeEEEEEc
Q 005656 399 NGVYLWVN 406 (685)
Q Consensus 399 ~~I~lW~~ 406 (685)
.|++|+.
T Consensus 272 -~v~v~~~ 278 (286)
T 1q7f_A 272 -RLYIYRY 278 (286)
T ss_dssp -EEEEEEC
T ss_pred -eEEEEEc
Confidence 9999974
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=4.4e-16 Score=158.57 Aligned_cols=271 Identities=13% Similarity=0.079 Sum_probs=180.8
Q ss_pred CCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656 92 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 171 (685)
Q Consensus 92 ~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (685)
-+.|.+++++|+|+.+++...++.+.+++...... +... ...+
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~---~~~~----------------~~~~------------------ 65 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFV---YQQR----------------GLGP------------------ 65 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSC---BSCG----------------GGCS------------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCccee---eccc----------------cccc------------------
Confidence 46789999999999888887776544432211110 0000 0000
Q ss_pred EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc-ccccccccc-ccccC
Q 005656 172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMS-ERSNY 249 (685)
Q Consensus 172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~-~~~~~~~~~-~~~~~ 249 (685)
...+.+.+|+..+....... .......+..++++++|+.+++...++.|++||..... ....+.... .....
T Consensus 66 ---~~~~~i~~~d~~~g~~~~~~---~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~ 139 (329)
T 3fvz_A 66 ---IEEDTILVIDPNNAEILQSS---GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQ 139 (329)
T ss_dssp ---CCSCCEEEECTTTCCEEEEE---CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCST
T ss_pred ---ccCCcEEEEECCCCeEEecc---CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCc
Confidence 02344555555433221111 01334568899999999988888889999999986542 232221100 00001
Q ss_pred CCCcCEEEEEEcC-CCCEEEEEE-CCCeEEEEECCCCceEEEeecC-----------CceeEEEEeec-CCEEEEEeCCC
Q 005656 250 AHNGEVVGVACDS-TNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG-----------CSLVKIVYHRV-NGLLATVADDL 315 (685)
Q Consensus 250 ~h~~~v~~l~~~~-~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-----------~~i~~~~~~~~-~~~l~~~~~dg 315 (685)
.+.....+++++| ++.++++.+ .++.|++|| .++..+..+... .....++++|+ +.++++...++
T Consensus 140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~ 218 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG 218 (329)
T ss_dssp TCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence 4455789999999 788777776 689999999 556666665422 23789999998 66777777889
Q ss_pred eEEEEEcCCCeeEEEEe--cCCCCeEEEEEcC------CCCEEEEEeCCCcEEEEEcCCCceeeEEee----ccceEEEE
Q 005656 316 VIRLFDVVALRMVRKFE--GHTDRITDFCFSE------DGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALS 383 (685)
Q Consensus 316 ~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp------dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~----~~~v~~v~ 383 (685)
.|++||..+++.+..+. .+...+..++|+| +|+..++.+.+..|++|+..+++.+..+.. -..+.+++
T Consensus 219 ~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia 298 (329)
T 3fvz_A 219 RIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIV 298 (329)
T ss_dssp EEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEE
T ss_pred EEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEE
Confidence 99999999899988884 4567789999999 333222333455899999999999988742 23389999
Q ss_pred EcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 384 LSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 384 ~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
++|+|.++++...+ +.|++|+..
T Consensus 299 ~~~dG~lyvad~~~-~~I~~~~~~ 321 (329)
T 3fvz_A 299 ASEDGTVYIGDAHT-NTVWKFTLT 321 (329)
T ss_dssp ECTTSEEEEEESSS-CCEEEEEEE
T ss_pred ECCCCCEEEEECCC-CEEEEEeCC
Confidence 99999655555555 499999854
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=2.2e-16 Score=162.07 Aligned_cols=258 Identities=7% Similarity=0.021 Sum_probs=174.2
Q ss_pred cCeeEEEEeCCCcEEEEec---------CCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---C
Q 005656 47 NAIISLHFFANEPVLMSAS---------ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---R 114 (685)
Q Consensus 47 ~~V~~l~~sp~~~~l~s~s---------~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g 114 (685)
..+..+++ ||+.++... .++.|.+|+++.+. .+.+ ..+..++|+|||++|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~ 83 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA--RRFI-------ENATMPRISPDGKKIAFMRANEEKK 83 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC--EEEE-------ESCEEEEECTTSSEEEEEEEETTTT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc--eEEc-------ccCCCeEECCCCCEEEEEEeccCCC
Confidence 34666777 787776542 25667888776542 1222 468899999999999987754 3
Q ss_pred c--eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCc
Q 005656 115 A--FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 192 (685)
Q Consensus 115 ~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 192 (685)
. |.+|++.+++.....
T Consensus 84 ~~~l~~~~~~~g~~~~l~-------------------------------------------------------------- 101 (347)
T 2gop_A 84 VSEIWVADLETLSSKKIL-------------------------------------------------------------- 101 (347)
T ss_dssp EEEEEEEETTTTEEEEEE--------------------------------------------------------------
T ss_pred cceEEEEECCCCceEEEE--------------------------------------------------------------
Confidence 3 666666554322211
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEEEecC---------------------------CcEEEEECCCCccccccccccc
Q 005656 193 HILRPCPENPTAVKACTISACGNFAVLGTAG---------------------------GWIERFNLQSGISRGSYLDMSE 245 (685)
Q Consensus 193 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------------------------g~i~~~d~~~~~~~~~~~~~~~ 245 (685)
.... +..++|+|+|+.+++++.+ ..|++||+.++.....+.
T Consensus 102 -------~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~---- 169 (347)
T 2gop_A 102 -------EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE---- 169 (347)
T ss_dssp -------EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE----
T ss_pred -------cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec----
Confidence 1122 7889999999988887642 579999998887633332
Q ss_pred cccCCCCcCEEEEEEcCCCCEEEEEECCC-------eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC----
Q 005656 246 RSNYAHNGEVVGVACDSTNTLMISAGYHG-------DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---- 314 (685)
Q Consensus 246 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---- 314 (685)
. . .+..++|+|+| ++++++.++ ...+|.+.+++....... ..+.. ++|+|+.|+.++.+
T Consensus 170 ----~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~ 239 (347)
T 2gop_A 170 ----K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKPEKKY 239 (347)
T ss_dssp ----E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECCSSSC
T ss_pred ----C-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEccccCC
Confidence 2 2 67789999999 777776542 334444335554443333 34443 39999988877654
Q ss_pred ----CeEEEEEcCCCeeEEEEecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC
Q 005656 315 ----LVIRLFDVVALRMVRKFEGHTDRITD-FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMD 389 (685)
Q Consensus 315 ----g~I~i~d~~~~~~~~~~~~h~~~I~~-l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~ 389 (685)
..|++|| +++......+|...+.. +.|+ || ++++++.++.+++| +.+++....+.....|.+++|+| .
T Consensus 240 ~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~ 312 (347)
T 2gop_A 240 MSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--I 312 (347)
T ss_dssp CCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--S
T ss_pred ccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--c
Confidence 4788888 66655444566778886 9999 88 88999999999999 88776655555555699999999 6
Q ss_pred eEEEEEeCCCeEEEEEc
Q 005656 390 VLATAHVDQNGVYLWVN 406 (685)
Q Consensus 390 ~Lat~~~d~~~I~lW~~ 406 (685)
++++++.++....||..
T Consensus 313 ~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 313 VVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEEEECSSSCCEEEEE
T ss_pred EEEEEcCCCChHHheEe
Confidence 77777766633366653
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.75 E-value=2.7e-16 Score=159.91 Aligned_cols=279 Identities=9% Similarity=0.059 Sum_probs=199.1
Q ss_pred CCCcEEEEeCCCCeeeEEeec-----ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeE
Q 005656 23 SSGVISIWNLEKRRLQSVIRE-----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 97 (685)
Q Consensus 23 ~dg~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~ 97 (685)
.++.|.+||.++++....+.. ........+.+. ++++.++...++.|.+||..+. +.+..+. ....+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~----~~~~~i~-~~~~p~~ 88 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF----KEVGRIT-GFTSPRY 88 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC----CEEEEEE-CCSSEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc----EEEEEcC-CCCCCcE
Confidence 378999999999987765521 122346778775 4556667777899999998876 5555553 3467899
Q ss_pred EEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCC
Q 005656 98 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 177 (685)
Q Consensus 98 i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (685)
++++++++..++...++.|.+||..+++....+..+..
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~------------------------------------------ 126 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM------------------------------------------ 126 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC------------------------------------------
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc------------------------------------------
Confidence 99999985444444789999999988765544421100
Q ss_pred ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCccccccccccccccCCCCcCE
Q 005656 178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 255 (685)
Q Consensus 178 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v 255 (685)
.........+++ ++..++++. .++.|.+||+.+++....+. .....
T Consensus 127 ---------------------~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~---------~g~~p 174 (328)
T 3dsm_A 127 ---------------------DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT---------IGIQP 174 (328)
T ss_dssp ---------------------CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE---------CSSCB
T ss_pred ---------------------cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE---------cCCCc
Confidence 001112334555 455555554 48899999999988776553 12234
Q ss_pred EEEEEcCCCCEEEEEECC----------CeEEEEECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 005656 256 VGVACDSTNTLMISAGYH----------GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVV 323 (685)
Q Consensus 256 ~~l~~~~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~ 323 (685)
.+++++++|++++++..+ +.|.++|..+++....+..+ .....++++|+++.++++.. .|.+||..
T Consensus 175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~ 252 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE 252 (328)
T ss_dssp CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence 678899999877766554 78999999999888777653 46899999999998888765 89999999
Q ss_pred CCeeEEE--EecCCCCeEEEEEcC-CCCEEEEE----eCCCcEEEEEcCCCceeeEEeeccceEEEEE
Q 005656 324 ALRMVRK--FEGHTDRITDFCFSE-DGKWLLSS----GMDGSLRIWDVILARQIDAIHVDVSITALSL 384 (685)
Q Consensus 324 ~~~~~~~--~~~h~~~I~~l~~sp-dg~~l~s~----s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~ 384 (685)
+++.... +..+......++++| ++++.++. ..++.|.+||.. ++.+..+........++|
T Consensus 253 t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 253 ADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp CSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred CCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 8875321 122245689999999 55666665 578899999988 999999987766777776
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=6.2e-16 Score=158.73 Aligned_cols=283 Identities=12% Similarity=0.086 Sum_probs=171.9
Q ss_pred cEEEEEEccCCCCEEEEE---------eCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCC---Cc--
Q 005656 4 AVTALAFSSDGQPLLASG---------ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NS-- 69 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg---------~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D---~~-- 69 (685)
.+..++| ||+ .+|.. ..++.|.+||+.+++.... ..+.+++|+|||+.|+.++.+ +.
T Consensus 16 ~~~~~~~--dG~-~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGE-LVAYVLTKANLKDNKYENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETT-EEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCc-EEEEEEeecCcccCCccceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4677888 888 55432 1257899999998875432 468899999999999887654 44
Q ss_pred EEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccc
Q 005656 70 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 149 (685)
Q Consensus 70 v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (685)
|.+|+++.+ +...... +.. +..+.|+|||+.|+.++.+.. .......+. .+.
T Consensus 87 l~~~~~~~g----~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~-------~~~~~~~~~---------~~~------ 138 (347)
T 2gop_A 87 IWVADLETL----SSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRR-------EDEDFIFED---------DVP------ 138 (347)
T ss_dssp EEEEETTTT----EEEEEEE-ESE-EEEEEECTTSSEEEEEEECCC-------C------------------CC------
T ss_pred EEEEECCCC----ceEEEEc-CCC-ccceeECCCCCEEEEEEccCC-------CcCCcEEEc---------ccc------
Confidence 455554433 2222222 233 899999999999998875420 000000000 000
Q ss_pred ccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-----
Q 005656 150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG----- 224 (685)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg----- 224 (685)
+. .++.. ........+++|++........+ . . . .+..++|+|+| .++++..++
T Consensus 139 -------~~------~~g~~--~~~~~~~~l~~~d~~~~~~~~~l-~---~-~-~~~~~~~spdg-~~~~~~~~~~~~~~ 196 (347)
T 2gop_A 139 -------AW------FDDLG--FFDGEKTTFWIFDTESEEVIEEF-E---K-P-RFSSGIWHRDK-IVVNVPHREIIPQY 196 (347)
T ss_dssp -------CC-----------------CEEEEEEEETTTTEEEEEE-E---E-E-TTCEEEEETTE-EEEEEECCCSSCCS
T ss_pred -------ee------ecCcc--cccCccceEEEEECCCCeEEeee-c---C-C-CcccccCCCCe-EEEEEecccccccc
Confidence 00 00000 00011234666666543321111 1 1 2 57788999999 777775542
Q ss_pred ----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC--------CeEEEEECCCCceEEEeec
Q 005656 225 ----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------GDIKVWDFKGRDLKSRWEV 292 (685)
Q Consensus 225 ----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~ 292 (685)
.|+++| ++... .+. .+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++.......
T Consensus 197 ~~~~~l~~~d--~~~~~-~l~--------~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~ 260 (347)
T 2gop_A 197 FKFWDIYIWE--DGKEE-KMF--------EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE 260 (347)
T ss_dssp SCCEEEEEEE--TTEEE-EEE--------EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT
T ss_pred cccccEEEeC--CCceE-Eec--------cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc
Confidence 455555 44432 221 23 445544 8999988887754 3688888 5554443333
Q ss_pred -CCceeE-EEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE-EEEEcCCCc
Q 005656 293 -GCSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL-RIWDVILAR 368 (685)
Q Consensus 293 -~~~i~~-~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I-~iwd~~~~~ 368 (685)
...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+..+.+.|.+++|+| .++++++.++.. .+|.+. ++
T Consensus 261 ~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 261 VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 356775 8898 88 99999999999999 8866654 4445678899999999 677777777665 788776 54
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.73 E-value=2.9e-14 Score=142.60 Aligned_cols=278 Identities=12% Similarity=0.078 Sum_probs=196.1
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
..+.+++++++|. +.++...++.|.+||.. ++........+...+.++++.+++.+.++...++.|..|+.+ + ..
T Consensus 15 ~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g--~~ 89 (299)
T 2z2n_A 15 TGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G--II 89 (299)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S--CE
T ss_pred CCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C--cE
Confidence 4689999999998 77666667899999988 554433222355789999999999988888778889888754 1 11
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
..+ ........+.++++.++|+.+++...++.|..||. +++......
T Consensus 90 ~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~------------------------------- 136 (299)
T 2z2n_A 90 KEY-TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL------------------------------- 136 (299)
T ss_dssp EEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-------------------------------
T ss_pred EEE-eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC-------------------------------
Confidence 111 12234567899999999987777767788888886 332211100
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
......+..+++.++|+..++...++.|..||. ++.......
T Consensus 137 ------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~- 178 (299)
T 2z2n_A 137 ------------------------------------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKI- 178 (299)
T ss_dssp ------------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-
T ss_pred ------------------------------------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeC-
Confidence 012345789999999988777777889999998 665443211
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
..+...+.++++++++.++++...++.|.+||. ++.... +.. ...+..++++++|+++++...++.|..
T Consensus 179 ------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 250 (299)
T 2z2n_A 179 ------PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGR 250 (299)
T ss_dssp ------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred ------CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence 134456889999999987776666889999999 665443 322 267889999999987766667889999
Q ss_pred EEcCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656 320 FDVVALRMVRKF--EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 320 ~d~~~~~~~~~~--~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
||. +++. ..+ ..+...+.++++ ++|++.++.+ .+.|..++..+++
T Consensus 251 ~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 251 LTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred ECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 998 4543 333 345567999999 8888777665 5667778876553
No 184
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.72 E-value=3.3e-15 Score=151.51 Aligned_cols=295 Identities=14% Similarity=0.100 Sum_probs=200.0
Q ss_pred EEEccCCCCEEEEEeC-----CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CCCcEEE
Q 005656 8 LAFSSDGQPLLASGAS-----SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKM 72 (685)
Q Consensus 8 l~fspdg~~~latg~~-----dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D~~v~i 72 (685)
....|+++ .+++... ++.|.+.|..+++.+..+..+. .+ .++++|||+++++++ .++.|.+
T Consensus 38 ~~~~pd~~-~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~-~P--~va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDAR-RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCTT-EEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCCC-EEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC-CC--cEEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 34578998 5555543 6899999999999999998443 34 499999999887765 3678999
Q ss_pred EEecCCCCCCceeEecccC-------CCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeEechhhHHHHHhhcc
Q 005656 73 WIFDTTDGDPRLLRFRSGH-------SAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLK 143 (685)
Q Consensus 73 Wd~~~~~~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 143 (685)
||..+. +.+..+.-. ......+.|+|||++++++.. ++.|.++|+.+.+....+...
T Consensus 114 iD~~t~----~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---------- 179 (386)
T 3sjl_D 114 FDPVTL----LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---------- 179 (386)
T ss_dssp ECTTTC----CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----------
T ss_pred EECCCC----eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC----------
Confidence 998776 444443211 235778999999999998864 689999999998877665310
Q ss_pred ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 005656 144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 223 (685)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 223 (685)
+ ....+....+.+++.+.|
T Consensus 180 -----------------------------------------------------------g--~~~~~P~g~~~~~~~~~D 198 (386)
T 3sjl_D 180 -----------------------------------------------------------D--CYHIFPTAPDTFFMHCRD 198 (386)
T ss_dssp -----------------------------------------------------------S--EEEEEEEETTEEEEEETT
T ss_pred -----------------------------------------------------------C--cceeecCCCceeEEECCC
Confidence 0 011111123344455556
Q ss_pred CcEEEEECCC-CccccccccccccccCCCCcCEE-EEEEc-CCCCEEEEEECCCeEEEEECCCCc--eEEEee-------
Q 005656 224 GWIERFNLQS-GISRGSYLDMSERSNYAHNGEVV-GVACD-STNTLMISAGYHGDIKVWDFKGRD--LKSRWE------- 291 (685)
Q Consensus 224 g~i~~~d~~~-~~~~~~~~~~~~~~~~~h~~~v~-~l~~~-~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~------- 291 (685)
|.+.++++.+ +........ ........+. ...|. ++|++++ .+.+|.|++.|+.+.. ....+.
T Consensus 199 G~~~~v~~~~~g~v~~~~~~----~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~ 273 (386)
T 3sjl_D 199 GSLAKVAFGTEGTPEITHTE----VFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAER 273 (386)
T ss_dssp SCEEEEECCSSSCCEEEECC----CCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred CCEEEEECCCCCeEEEeecc----eeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccc
Confidence 6666666654 332111000 0001111111 13554 5665444 5668999999997664 333332
Q ss_pred ----cCCceeEEEEeecCCEEEEEeC----------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEE-eC
Q 005656 292 ----VGCSLVKIVYHRVNGLLATVAD----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSS-GM 355 (685)
Q Consensus 292 ----~~~~i~~~~~~~~~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~-s~ 355 (685)
.......++++++++.+++... .+.|.++|+.+++.++++..- ..+..+++++|++ +|+++ ..
T Consensus 274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTG 352 (386)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETT
T ss_pred cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCC
Confidence 0134455788999998877653 257999999999999988732 3688999999997 66665 45
Q ss_pred CCcEEEEEcCCCceeeEEeeccceEEEEEcCC
Q 005656 356 DGSLRIWDVILARQIDAIHVDVSITALSLSPN 387 (685)
Q Consensus 356 Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spd 387 (685)
++.|.++|..+++.+..+......+.+.+++|
T Consensus 353 ~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 353 DKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp TTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 89999999999999999998888888888887
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=2.4e-15 Score=170.05 Aligned_cols=243 Identities=14% Similarity=0.110 Sum_probs=166.5
Q ss_pred cEEEEEEccCCCCEEEEEeC-CC----cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCc---------
Q 005656 4 AVTALAFSSDGQPLLASGAS-SG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS--------- 69 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~-dg----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~--------- 69 (685)
.+.+++|||||+ +||.+.. +| .|++||+.+++...... .+ ..+.+++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 126 ALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 578999999999 6765543 33 89999999998876543 22 23778999999999998887765
Q ss_pred -------EEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeC-----CCceEEEEeec------Cc-eeeEe
Q 005656 70 -------IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-----DRAFRLFSVIQ------DQ-QSREL 130 (685)
Q Consensus 70 -------v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-----dg~i~vwd~~~------~~-~~~~~ 130 (685)
|++|++.++.....++.....|...+..+.|+|||++|+.++. +..|++||+.+ +. ....+
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence 8999887653222333333445666789999999999988764 44566666543 11 00000
Q ss_pred chhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE
Q 005656 131 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI 210 (685)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (685)
T Consensus 283 -------------------------------------------------------------------------------- 282 (710)
T 2xdw_A 283 -------------------------------------------------------------------------------- 282 (710)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC----CeEEEEECCCCce
Q 005656 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH----GDIKVWDFKGRDL 286 (685)
Q Consensus 211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~~~ 286 (685)
. .+...+.. .|+++|+.|+..+.. +.|.+||+.++..
T Consensus 283 ------------------------------~--------~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 323 (710)
T 2xdw_A 283 ------------------------------I--------DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE 323 (710)
T ss_dssp ------------------------------E--------CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred ------------------------------e--------CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 0 22222222 355666666555432 3588888877642
Q ss_pred ---EEEeecC--CceeEEEEeecCCEEEEEeCCC--eEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-e---C
Q 005656 287 ---KSRWEVG--CSLVKIVYHRVNGLLATVADDL--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS-G---M 355 (685)
Q Consensus 287 ---~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~-s---~ 355 (685)
...+.+. ..+..+.+++++.++++...++ .|++||+.+++.++.+..+.+.|..++++|+++.++.. + .
T Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 403 (710)
T 2xdw_A 324 SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLS 403 (710)
T ss_dssp GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSC
T ss_pred ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCC
Confidence 2233332 2577888887777888888888 46667877888888888888889999999999866633 2 3
Q ss_pred CCcEEEEEcCCCc
Q 005656 356 DGSLRIWDVILAR 368 (685)
Q Consensus 356 Dg~I~iwd~~~~~ 368 (685)
.++|+.||+.+++
T Consensus 404 P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 404 PGIIYHCDLTKEE 416 (710)
T ss_dssp CCEEEEEETTSSS
T ss_pred CCEEEEEECCCCc
Confidence 5789999999887
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=4.9e-15 Score=167.49 Aligned_cols=278 Identities=7% Similarity=-0.026 Sum_probs=189.5
Q ss_pred CCCcEEEEecCC-C--cEEEEEecCCCCCCceeEe----cccCCCCCeEEEEecCCCEEEEEeCCC-----ceEEEEeec
Q 005656 56 ANEPVLMSASAD-N--SIKMWIFDTTDGDPRLLRF----RSGHSAPPLCIRFYANGRHILSAGQDR-----AFRLFSVIQ 123 (685)
Q Consensus 56 p~~~~l~s~s~D-~--~v~iWd~~~~~~~~~~~~~----~~~h~~~v~~i~~~~~~~~l~s~s~dg-----~i~vwd~~~ 123 (685)
|+|++++....+ + .-.+|..+...+..+.+.. -.+|...+..++|||||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 788877655432 2 2367777654443333321 123445688999999999998776543 899999987
Q ss_pred CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656 124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 203 (685)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 203 (685)
++...... ...
T Consensus 161 g~~~~~~~---------------------------------------------------------------------~~~ 171 (710)
T 2xdw_A 161 AKELPDVL---------------------------------------------------------------------ERV 171 (710)
T ss_dssp TEEEEEEE---------------------------------------------------------------------EEE
T ss_pred CCCCcccc---------------------------------------------------------------------cCc
Confidence 76533210 011
Q ss_pred CeEEEEEccCCCEEEEEecCCc----------------EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE
Q 005656 204 AVKACTISACGNFAVLGTAGGW----------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM 267 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~----------------i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 267 (685)
.+..++|+|||+.|+.++.++. |++|++.++........ ....|...+.++.|+|+|++|
T Consensus 172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~----~~~~~~~~~~~~~~SpDg~~l 247 (710)
T 2xdw_A 172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA----EFPDEPKWMGGAELSDDGRYV 247 (710)
T ss_dssp CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE----CCTTCTTCEEEEEECTTSCEE
T ss_pred ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe----ccCCCCeEEEEEEEcCCCCEE
Confidence 2456899999999999888765 99999988764322110 111356678899999999998
Q ss_pred EEEEC-----CCeEEEEECCC------Cc-eEEEeecC-CceeEEEEeecCCEEEEEeCC----CeEEEEEcCCCe--eE
Q 005656 268 ISAGY-----HGDIKVWDFKG------RD-LKSRWEVG-CSLVKIVYHRVNGLLATVADD----LVIRLFDVVALR--MV 328 (685)
Q Consensus 268 ~s~s~-----dg~i~iwd~~~------~~-~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~--~~ 328 (685)
+.++. +..|++||+.+ +. ....+..+ ..+. ..|+|+|+.|+..+.. +.|.+||+.++. ..
T Consensus 248 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 248 LLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW 326 (710)
T ss_dssp EEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred EEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence 87764 56899999986 42 23333333 3333 3588999977776653 369999998874 23
Q ss_pred EEEecCCC--CeEEEEEcCCCCEEEEEeCCCc--EEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeC---CCe
Q 005656 329 RKFEGHTD--RITDFCFSEDGKWLLSSGMDGS--LRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVD---QNG 400 (685)
Q Consensus 329 ~~~~~h~~--~I~~l~~spdg~~l~s~s~Dg~--I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d---~~~ 400 (685)
+.+..|.. .+..++|++++.++++...|+. |++|++.+|+.+..+..+.. +..++++|+++.++.+..+ -..
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 406 (710)
T 2xdw_A 327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGI 406 (710)
T ss_dssp EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCE
Confidence 45555544 6888999988888888888885 66677767887777765543 8899999999877755433 137
Q ss_pred EEEEEcC
Q 005656 401 VYLWVNR 407 (685)
Q Consensus 401 I~lW~~~ 407 (685)
|++|+..
T Consensus 407 i~~~d~~ 413 (710)
T 2xdw_A 407 IYHCDLT 413 (710)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999864
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.70 E-value=2.5e-15 Score=169.39 Aligned_cols=278 Identities=9% Similarity=-0.033 Sum_probs=182.4
Q ss_pred EccCCCCEEEEEeC-C----CcEEEEeCCCCeeeEEee-----cccccCeeEEEEeCCCcEEE-----EecCCCcEEEEE
Q 005656 10 FSSDGQPLLASGAS-S----GVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLM-----SASADNSIKMWI 74 (685)
Q Consensus 10 fspdg~~~latg~~-d----g~I~vwd~~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~l~-----s~s~D~~v~iWd 74 (685)
.+|+|+ .++.... . +.|.+.+...+.....+. .+|...+.+++|||||++|| .|+.+.+|++||
T Consensus 75 p~~dG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 75 PSRRNG-RFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CEEETT-EEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred CEEECC-EEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 348898 5554433 3 234555555554333332 24556799999999999988 444567899999
Q ss_pred ecCCCCCCceeEecccCCCC--CeEEEEecCCCEEEEEeCCCc-------------eEEEEeecCceeeEechhhHHHHH
Q 005656 75 FDTTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQDRA-------------FRLFSVIQDQQSRELSQRHVAKRA 139 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~s~s~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~ 139 (685)
+.++. .+. ..+... ...++|+|||+.|+.++.|.. |++|++.++...
T Consensus 154 l~tg~----~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~------------ 215 (695)
T 2bkl_A 154 VDSGE----WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK------------ 215 (695)
T ss_dssp TTTCC----BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG------------
T ss_pred CCCCC----CcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh------------
Confidence 98763 220 111112 267899999999999988765 677766544321
Q ss_pred hhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE
Q 005656 140 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 219 (685)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 219 (685)
...+.....+...+..+.+||+|+++++
T Consensus 216 ----------------------------------------------------~~lv~~~~~~~~~~~~~~~SpDG~~l~~ 243 (695)
T 2bkl_A 216 ----------------------------------------------------DTVVHERTGDPTTFLQSDLSRDGKYLFV 243 (695)
T ss_dssp ----------------------------------------------------CEEEECCCCCTTCEEEEEECTTSCCEEE
T ss_pred ----------------------------------------------------ceEEEecCCCCEEEEEEEECCCCCEEEE
Confidence 1111111134457889999999999988
Q ss_pred EecCC----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCce---EEE
Q 005656 220 GTAGG----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDL---KSR 289 (685)
Q Consensus 220 g~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~~~ 289 (685)
++.++ .|++++..++...... .+...+....+ ++|.+++++. .++.|.+||+.++.. ...
T Consensus 244 ~~~~~~~~~~l~~~~~~~~~~~~l~---------~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l 313 (695)
T 2bkl_A 244 YILRGWSENDVYWKRPGEKDFRLLV---------KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI 313 (695)
T ss_dssp EEEETTTEEEEEEECTTCSSCEEEE---------ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE
T ss_pred EEeCCCCceEEEEEcCCCCceEEee---------cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE
Confidence 87766 6777776555433222 34445556666 5555444443 257899999987653 333
Q ss_pred eec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcC-CCeeEEEEecC-CCCeEEEEEcCCCCEEEEEe----CCCcEEE
Q 005656 290 WEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG----MDGSLRI 361 (685)
Q Consensus 290 ~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s----~Dg~I~i 361 (685)
+.. ...+..++++ ++.++++...|+..++|.+. +++..+.+..+ .+.|..++++|+++.++... ..++|++
T Consensus 314 ~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 314 VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 333 3457778887 67788888999988888665 46666666655 66788889999998776332 3478999
Q ss_pred EEcCCCce
Q 005656 362 WDVILARQ 369 (685)
Q Consensus 362 wd~~~~~~ 369 (685)
||+.+++.
T Consensus 393 ~d~~~g~~ 400 (695)
T 2bkl_A 393 TSVSTGKS 400 (695)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 99998874
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=3.1e-14 Score=154.15 Aligned_cols=294 Identities=12% Similarity=0.061 Sum_probs=205.7
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCC--CCeeeEEeecccccCeeEEEEe----CCCcEEEEecC-CCcEEEEEec
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLE--KRRLQSVIREAHDNAIISLHFF----ANEPVLMSASA-DNSIKMWIFD 76 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~--~~~~~~~~~~~h~~~V~~l~~s----p~~~~l~s~s~-D~~v~iWd~~ 76 (685)
.+..+.|||||+ ++++++.+|.|.+||+. +++.+..+.. ......++|+ |||+++++++. +++|.++|..
T Consensus 198 ~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 198 AVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp CEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CccceEECCCCC-EEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 467899999999 78888899999999996 7888888873 2346899999 69998887765 5899999866
Q ss_pred CCCCCCceeEeccc----------CCC-CCeEEEEecCCCE-EEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccc
Q 005656 77 TTDGDPRLLRFRSG----------HSA-PPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM 144 (685)
Q Consensus 77 ~~~~~~~~~~~~~~----------h~~-~v~~i~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 144 (685)
+. +.+..... |.. .+..+..++++.. +++...+|.|.++|...........
T Consensus 275 t~----~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~------------- 337 (567)
T 1qks_A 275 TL----EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE------------- 337 (567)
T ss_dssp TC----CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-------------
T ss_pred CC----cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee-------------
Confidence 64 44433221 222 5677888887554 4455566888888875443211100
Q ss_pred cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cC
Q 005656 145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AG 223 (685)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d 223 (685)
+ ........+.|+|+|++++++. .+
T Consensus 338 ----------------------------------------i--------------~~~~~~~d~~~~pdgr~~~va~~~s 363 (567)
T 1qks_A 338 ----------------------------------------I--------------SAERFLHDGGLDGSHRYFITAANAR 363 (567)
T ss_dssp ----------------------------------------E--------------ECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred ----------------------------------------e--------------eccccccCceECCCCCEEEEEeCCC
Confidence 0 1123466789999999987766 57
Q ss_pred CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEE-EEEE-CCCeEEEEECCC-------CceEEEeecC-
Q 005656 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAG-YHGDIKVWDFKG-------RDLKSRWEVG- 293 (685)
Q Consensus 224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s-~dg~i~iwd~~~-------~~~~~~~~~~- 293 (685)
+.|.++|+.+++....+... ....|.+....+ ++|++..+ +++. .+++|.++|..+ .+.+.++...
T Consensus 364 n~V~ViD~~t~kl~~~i~vg---g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g 439 (567)
T 1qks_A 364 NKLVVIDTKEGKLVAIEDTG---GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG 439 (567)
T ss_dssp TEEEEEETTTTEEEEEEECS---SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred CeEEEEECCCCcEEEEEecc---CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC
Confidence 89999999999876554210 112454432222 57875544 4443 468999999987 5677777754
Q ss_pred CceeEEEEeecCCEEEEEeC-------CCeEEEEEcCCC-----e-eEEEEe--------cCCCCeEEEEEcCCCCEEEE
Q 005656 294 CSLVKIVYHRVNGLLATVAD-------DLVIRLFDVVAL-----R-MVRKFE--------GHTDRITDFCFSEDGKWLLS 352 (685)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~-------dg~I~i~d~~~~-----~-~~~~~~--------~h~~~I~~l~~spdg~~l~s 352 (685)
..-..+..+|+++++++... .++|.++|+.+. . .+..+. .....+..+.|+|+|+++..
T Consensus 440 ~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 519 (567)
T 1qks_A 440 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWF 519 (567)
T ss_dssp SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEE
T ss_pred CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEE
Confidence 33355788999999988763 359999999877 2 123332 12356899999999998876
Q ss_pred Ee-----CCCcEEEEEcCCCceeeEEee
Q 005656 353 SG-----MDGSLRIWDVILARQIDAIHV 375 (685)
Q Consensus 353 ~s-----~Dg~I~iwd~~~~~~i~~~~~ 375 (685)
+. .++.|.|+|..+++++..+..
T Consensus 520 s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 520 SVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 63 378999999999999888874
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=6.3e-15 Score=147.58 Aligned_cols=248 Identities=10% Similarity=0.044 Sum_probs=176.8
Q ss_pred eeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCc
Q 005656 37 LQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 115 (685)
Q Consensus 37 ~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~ 115 (685)
.+..+. .+.....+++|+|+++ +++++..++.|..|+.+.+ ...+..+...+.+++++++|+.+++...++.
T Consensus 19 ~~~~l~-~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 19 EARRLA-DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp CCEEEE-CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC------EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred cEEEEe-cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC------eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence 334444 4566788999999998 7888888999999987653 2333456778899999999998777766789
Q ss_pred eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceee
Q 005656 116 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 195 (685)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 195 (685)
|.+||..+++........
T Consensus 92 i~~~d~~~g~~~~~~~~~-------------------------------------------------------------- 109 (296)
T 3e5z_A 92 LERQREPGGEWESIADSF-------------------------------------------------------------- 109 (296)
T ss_dssp EEEECSTTCCEEEEECEE--------------------------------------------------------------
T ss_pred EEEEcCCCCcEEEEeecc--------------------------------------------------------------
Confidence 999998666532221100
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEE----Ee-------------cCCcEEEEECCCCccccccccccccccCCCCcCEEEE
Q 005656 196 RPCPENPTAVKACTISACGNFAVL----GT-------------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 258 (685)
Q Consensus 196 ~~~~~~~~~v~~~~~s~~g~~l~~----g~-------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l 258 (685)
.......+..++++|+|+++++ |+ ..+.|+.++.. +...... .+.....++
T Consensus 110 --~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~---------~~~~~~~gi 177 (296)
T 3e5z_A 110 --EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI---------RDRVKPNGL 177 (296)
T ss_dssp --TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE---------CCCSSEEEE
T ss_pred --CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee---------cCCCCCccE
Confidence 0011234567899999998877 33 13567777765 4332211 455677899
Q ss_pred EEcCCCCEEEEEECCCeEEEEECC-CCce---EEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec
Q 005656 259 ACDSTNTLMISAGYHGDIKVWDFK-GRDL---KSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG 333 (685)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~ 333 (685)
+|+|+++.+++.+.++.|.+|++. ++.+ ...+. ....+..++++++|+++++. ++.|.+||.. ++.+..+..
T Consensus 178 ~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 178 AFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC
T ss_pred EECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC
Confidence 999999988777778999999997 5554 22331 22456789999999866655 7899999986 778888888
Q ss_pred CCCCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 334 HTDRITDFCF-SEDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 334 h~~~I~~l~~-spdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
+.. +++++| +|+++.|++++.++ +.-++..+.++.
T Consensus 255 ~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~ 290 (296)
T 3e5z_A 255 PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE 290 (296)
T ss_dssp SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence 877 999999 68999999888764 555666665543
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.69 E-value=2.1e-13 Score=140.37 Aligned_cols=280 Identities=13% Similarity=0.023 Sum_probs=187.3
Q ss_pred EEccCCCCEEEEEeC--CC---cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CCCcEEEE
Q 005656 9 AFSSDGQPLLASGAS--SG---VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMW 73 (685)
Q Consensus 9 ~fspdg~~~latg~~--dg---~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D~~v~iW 73 (685)
...|+++ .+++... .+ .|.+||..+++.+..+..+ ..+ .++++|||++++.+. .++.|.+|
T Consensus 27 ~~~~~~~-~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 27 APGADGR-RSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred cCCCCCC-EEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 3457887 5555542 33 7899999999998888733 333 999999999888875 36789999
Q ss_pred EecCCCCCCceeEeccc-------CCCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeE-echhhHHHHHhhcc
Q 005656 74 IFDTTDGDPRLLRFRSG-------HSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRE-LSQRHVAKRARKLK 143 (685)
Q Consensus 74 d~~~~~~~~~~~~~~~~-------h~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~ 143 (685)
|..+. +.+....- +......+.|+|||++|++++. ++.|.++| .+++.... +..
T Consensus 103 D~~t~----~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~----------- 166 (373)
T 2mad_H 103 DPVTF----LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS----------- 166 (373)
T ss_pred ECCCC----cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----------
Confidence 98765 33332211 1234568999999999998874 47899999 88765544 321
Q ss_pred ccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEec
Q 005656 144 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTA 222 (685)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~ 222 (685)
.. ++.+.|.+ +.+++.+.
T Consensus 167 ----------------------------------------------------------~~---~~~~~~~~~~~~~~~~~ 185 (373)
T 2mad_H 167 ----------------------------------------------------------PT---CYHIHPGAPSTFYLLCA 185 (373)
T ss_pred ----------------------------------------------------------Cc---eEEEEeCCCceEEEEcC
Confidence 11 13334444 34455667
Q ss_pred CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEEEeec--------
Q 005656 223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEV-------- 292 (685)
Q Consensus 223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~-------- 292 (685)
+|.+.+++. ++.......... ...+...-.....+.+++..++..+..+.+.+.|+.+.. ....+..
T Consensus 186 dg~~~~vd~-~g~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~ 262 (373)
T 2mad_H 186 QGGLAKTDH-AGGAAGAGLVGA--MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD 262 (373)
T ss_pred CCCEEEEEC-CCcEEEEEeccc--cccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence 888888888 665542211000 000111112234556666555555577899999987553 2222221
Q ss_pred ---CCceeEEEEeecCCEEEEEeC----------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEe-CCC
Q 005656 293 ---GCSLVKIVYHRVNGLLATVAD----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDG 357 (685)
Q Consensus 293 ---~~~i~~~~~~~~~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s-~Dg 357 (685)
+.....+.++|+++.++++.. ++.|.++|..+++.+.++.. ......++|+|||+ .++++. .++
T Consensus 263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~ 341 (373)
T 2mad_H 263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTE 341 (373)
T ss_pred ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCC
Confidence 123445788999998877653 35899999999999999863 33588999999999 777776 589
Q ss_pred cEEEEEcCCCceeeEE
Q 005656 358 SLRIWDVILARQIDAI 373 (685)
Q Consensus 358 ~I~iwd~~~~~~i~~~ 373 (685)
.|.+||+.+++.+..+
T Consensus 342 ~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 342 VLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCCEEeee
Confidence 9999999999998873
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=1.2e-14 Score=147.70 Aligned_cols=260 Identities=11% Similarity=0.046 Sum_probs=184.3
Q ss_pred CCCcEEEEEecCCCCCCceeEec----c--cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHH
Q 005656 66 ADNSIKMWIFDTTDGDPRLLRFR----S--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 139 (685)
Q Consensus 66 ~D~~v~iWd~~~~~~~~~~~~~~----~--~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 139 (685)
.+++|.+||..++ +..... . .....+..+.+. +++.+++...++.|.+||..+++....+.
T Consensus 15 ~~~~l~~~d~~t~----~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-------- 81 (328)
T 3dsm_A 15 SNATLSYYDPATC----EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-------- 81 (328)
T ss_dssp CCBEEEEEETTTT----EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE--------
T ss_pred CCceEEEEECCCC----EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC--------
Confidence 3889999998876 332221 1 122345777774 45555566668999999998887655542
Q ss_pred hhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE
Q 005656 140 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 219 (685)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 219 (685)
.......+++++++ .+++
T Consensus 82 -------------------------------------------------------------~~~~p~~i~~~~~g-~lyv 99 (328)
T 3dsm_A 82 -------------------------------------------------------------GFTSPRYIHFLSDE-KAYV 99 (328)
T ss_dssp -------------------------------------------------------------CCSSEEEEEEEETT-EEEE
T ss_pred -------------------------------------------------------------CCCCCcEEEEeCCC-eEEE
Confidence 12457788998988 5555
Q ss_pred Ee-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCceEEEeecCCce
Q 005656 220 GT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRDLKSRWEVGCSL 296 (685)
Q Consensus 220 g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~i 296 (685)
+. .++.|.+||..+++....+.... ..+......++++ ++..++.+. .++.|.+||..+++....+......
T Consensus 100 ~~~~~~~v~~iD~~t~~~~~~i~~g~---~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p 174 (328)
T 3dsm_A 100 TQIWDYRIFIINPKTYEITGYIECPD---MDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP 174 (328)
T ss_dssp EEBSCSEEEEEETTTTEEEEEEECTT---CCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB
T ss_pred EECCCCeEEEEECCCCeEEEEEEcCC---ccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc
Confidence 55 78999999999988765543100 0011124456666 344555554 4889999999999998888877777
Q ss_pred eEEEEeecCCEEEEEeCC----------CeEEEEEcCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 297 VKIVYHRVNGLLATVADD----------LVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 297 ~~~~~~~~~~~l~~~~~d----------g~I~i~d~~~~~~~~~~~~h-~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
..+.++|+|++++++..+ +.|.++|..+++....+... ...+..++|+||+++|+++.. .|.+||..
T Consensus 175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~ 252 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE 252 (328)
T ss_dssp CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence 889999999977776654 79999999999988777633 246899999999999988765 89999999
Q ss_pred CCceeeE--Eee-ccceEEEEEcCCCCeEEEEE----eCCCeEEEEEcC
Q 005656 366 LARQIDA--IHV-DVSITALSLSPNMDVLATAH----VDQNGVYLWVNR 407 (685)
Q Consensus 366 ~~~~i~~--~~~-~~~v~~v~~spdg~~Lat~~----~d~~~I~lW~~~ 407 (685)
+++.... +.. ...+..++++|++..|.++. ...+.|++|+..
T Consensus 253 t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 253 ADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 8876421 222 24489999999666666665 334589999754
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=1.2e-14 Score=145.64 Aligned_cols=237 Identities=8% Similarity=-0.029 Sum_probs=171.7
Q ss_pred ccCCCCCeEEEEecCCC-EEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCC
Q 005656 89 SGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 167 (685)
Q Consensus 89 ~~h~~~v~~i~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (685)
..+...+.+++|+|+|+ .++++..++.|..|+..++ ...+.
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~------------------------------------ 65 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM------------------------------------ 65 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE------------------------------------
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE------------------------------------
Confidence 34556678999999998 6777788899999997655 22221
Q ss_pred cceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccc
Q 005656 168 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 247 (685)
Q Consensus 168 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~ 247 (685)
.....+.+++++++|+.+++...++.|.+||..++........ .
T Consensus 66 --------------------------------~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~----~ 109 (296)
T 3e5z_A 66 --------------------------------HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADS----F 109 (296)
T ss_dssp --------------------------------SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECE----E
T ss_pred --------------------------------CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec----c
Confidence 2245678999999999887777778999999988875433210 0
Q ss_pred cCCCCcCEEEEEEcCCCCEEEEEEC-----------------CCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEE
Q 005656 248 NYAHNGEVVGVACDSTNTLMISAGY-----------------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 310 (685)
Q Consensus 248 ~~~h~~~v~~l~~~~~~~~l~s~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 310 (685)
.......+.+++++|+|+++++.+. .+.|..++.. ++.............++|+|+++.+++
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~ 188 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVS 188 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEE
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEE
Confidence 0011235678999999998887321 3456666655 554444444466789999999998877
Q ss_pred EeCCCeEEEEEcC-CCee---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEE-c
Q 005656 311 VADDLVIRLFDVV-ALRM---VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL-S 385 (685)
Q Consensus 311 ~~~dg~I~i~d~~-~~~~---~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~-s 385 (685)
.+.++.|++||+. +++. ...+..+.+.+.+++++++|+++++. ++.|.+|+.. ++.+..+..+..+++++| +
T Consensus 189 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~ 265 (296)
T 3e5z_A 189 DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGG 265 (296)
T ss_dssp ETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEES
T ss_pred eCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEEC
Confidence 7778999999997 5554 33444455667889999999976666 7889999976 888888876655999999 6
Q ss_pred CCCCeEEEEEeCCCeEEEEE
Q 005656 386 PNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 386 pdg~~Lat~~~d~~~I~lW~ 405 (685)
|+++.|++++.+ .++-++
T Consensus 266 ~d~~~L~v~t~~--~l~~~~ 283 (296)
T 3e5z_A 266 PEGRTLYMTVST--EFWSIE 283 (296)
T ss_dssp TTSCEEEEEETT--EEEEEE
T ss_pred CCCCEEEEEcCC--eEEEEE
Confidence 899999998865 455444
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=2.8e-13 Score=135.46 Aligned_cols=275 Identities=11% Similarity=0.047 Sum_probs=194.8
Q ss_pred ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE-ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEee
Q 005656 44 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 122 (685)
Q Consensus 44 ~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~ 122 (685)
.+...+.++++.++|++.++...++.|.+|+.+ + .... ....+...+.++++.++|..+++...++.|..|+..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-G----KITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C----CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C----CeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 455689999999999988887778899999766 3 2222 222345678999999999877776667888888764
Q ss_pred cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656 123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 202 (685)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 202 (685)
++ ...+. . +...
T Consensus 87 -g~-~~~~~-----------------------------------------------------~-------------~~~~ 98 (299)
T 2z2n_A 87 -GI-IKEYT-----------------------------------------------------L-------------PNPD 98 (299)
T ss_dssp -SC-EEEEE-----------------------------------------------------C-------------SSTT
T ss_pred -Cc-EEEEe-----------------------------------------------------C-------------CCcC
Confidence 21 11110 0 0123
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 282 (685)
..+..+++.++|+..++...++.|.+||. ++....... ..+...+.+++++++++.+++...++.|..||.
T Consensus 99 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~- 169 (299)
T 2z2n_A 99 SAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL-------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE- 169 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred CCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC-------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-
Confidence 46788999999988887777889999998 554432211 134457899999999987777766789999998
Q ss_pred CCceEEE-ee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656 283 GRDLKSR-WE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSL 359 (685)
Q Consensus 283 ~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~-~~~h~~~I~~l~~spdg~~l~s~s~Dg~I 359 (685)
+++.... .. ....+..++++++|.++++...++.|.+||. +++.... ...+...+.+++++++|++.++...++.|
T Consensus 170 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 248 (299)
T 2z2n_A 170 SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKI 248 (299)
T ss_dssp TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceE
Confidence 6665442 22 2356789999999997777767889999999 6664332 23355679999999999977766678899
Q ss_pred EEEEcCCCceeeEEeec---cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 360 RIWDVILARQIDAIHVD---VSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 360 ~iwd~~~~~~i~~~~~~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
..||. ++. +..+... ..+.++++ ++|.+.++.. .+ .|..++.
T Consensus 249 ~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~-~l~~~~~ 293 (299)
T 2z2n_A 249 GRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CD-KIGKLTL 293 (299)
T ss_dssp EEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TT-EEEEEEE
T ss_pred EEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CC-cEEEEEc
Confidence 99998 454 3344322 34899999 8888777654 43 6777653
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=4.2e-15 Score=167.53 Aligned_cols=278 Identities=7% Similarity=-0.015 Sum_probs=188.2
Q ss_pred eCCCcEEEEecCCC---cEEEEEecCCCCCCceeEec----ccCCCCCeEEEEecCCCEEEEE-----eCCCceEEEEee
Q 005656 55 FANEPVLMSASADN---SIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSA-----GQDRAFRLFSVI 122 (685)
Q Consensus 55 sp~~~~l~s~s~D~---~v~iWd~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~s~-----s~dg~i~vwd~~ 122 (685)
+|+|++++....++ .-.+|..+...+..+.+... .+|...+.+++|||||++|+.+ +.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47888877665543 46678776544444444322 2466678899999999999843 344689999987
Q ss_pred cCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCC
Q 005656 123 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 202 (685)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 202 (685)
+++...... ...
T Consensus 156 tg~~~~~~~--------------------------------------------------------------------~~~ 167 (695)
T 2bkl_A 156 SGEWSKVDV--------------------------------------------------------------------IEG 167 (695)
T ss_dssp TCCBCSSCC--------------------------------------------------------------------BSC
T ss_pred CCCCcCCcc--------------------------------------------------------------------cCc
Confidence 765320000 001
Q ss_pred CCeEEEEEccCCCEEEEEecCCc-------------EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEE
Q 005656 203 TAVKACTISACGNFAVLGTAGGW-------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 269 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~-------------i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 269 (685)
.....++|+|||+.++.++.+.. |++|++.++........ ....|...+.++.|+|+|++|+.
T Consensus 168 ~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~----~~~~~~~~~~~~~~SpDG~~l~~ 243 (695)
T 2bkl_A 168 GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH----ERTGDPTTFLQSDLSRDGKYLFV 243 (695)
T ss_dssp CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE----CCCCCTTCEEEEEECTTSCCEEE
T ss_pred ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE----ecCCCCEEEEEEEECCCCCEEEE
Confidence 11257899999999999988765 99999998864322110 11245568899999999999888
Q ss_pred EECCC----eEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCee--EEEEecC--CCC
Q 005656 270 AGYHG----DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRM--VRKFEGH--TDR 337 (685)
Q Consensus 270 ~s~dg----~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~--~~~~~~h--~~~ 337 (685)
++.++ .|++|+..++...........+....+ ++|+ ++..+. ++.|.+||+.+++. ...+..| ...
T Consensus 244 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 321 (695)
T 2bkl_A 244 YILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS 321 (695)
T ss_dssp EEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred EEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence 77666 678887766665555544455555556 6677 555443 57999999987753 2333333 456
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCceeeEEeec--cceEEEEEcCCCCeEEEEEeCC---CeEEEEEcC
Q 005656 338 ITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVD--VSITALSLSPNMDVLATAHVDQ---NGVYLWVNR 407 (685)
Q Consensus 338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~-~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~---~~I~lW~~~ 407 (685)
+..++|+ ++.++++...|+..++|.+. ++.....+..+ ..+..++++|+++.++.+..+. ..|++|+..
T Consensus 322 l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 322 LLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 8888998 67788888999998888765 46666666544 3488899999998777554331 279999864
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=2.7e-14 Score=140.80 Aligned_cols=241 Identities=9% Similarity=0.057 Sum_probs=181.8
Q ss_pred CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCC-CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhH
Q 005656 57 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 135 (685)
Q Consensus 57 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 135 (685)
.+++|++++.|+.|.+||..++ +.+..+..+. ..+.++.++|+|+.++ +.++.|..||. +++....+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG----~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~--- 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK----EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA--- 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT----EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC---
T ss_pred CCcEEEeeCCCCEEEEEECCCC----eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC---
Confidence 3579999999999999998777 6666666665 5789999999999888 45777999887 6665444421
Q ss_pred HHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC
Q 005656 136 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 215 (685)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 215 (685)
.....+.++.+.++|+
T Consensus 74 ----------------------------------------------------------------~~~~~~~~~~~~~dG~ 89 (276)
T 3no2_A 74 ----------------------------------------------------------------PAGCEMQTARILPDGN 89 (276)
T ss_dssp ----------------------------------------------------------------CTTCEEEEEEECTTSC
T ss_pred ----------------------------------------------------------------CCCccccccEECCCCC
Confidence 1123577888999999
Q ss_pred EEEEEec-CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC
Q 005656 216 FAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC 294 (685)
Q Consensus 216 ~l~~g~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (685)
++++.+. ++.|..+|. +|+....+..... ...+......+++.++|+++++...++.|..||.. ++.+.++..+.
T Consensus 90 ~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~--~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~ 165 (276)
T 3no2_A 90 ALVAWCGHPSTILEVNM-KGEVLSKTEFETG--IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG 165 (276)
T ss_dssp EEEEEESTTEEEEEECT-TSCEEEEEEECCS--CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS
T ss_pred EEEEecCCCCEEEEEeC-CCCEEEEEeccCC--CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC
Confidence 9999887 888888886 6665555431110 01222345566788999999999999999999998 99999988877
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC------CCeEEEEEcCCCCEEEEEeCC--------CcEE
Q 005656 295 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT------DRITDFCFSEDGKWLLSSGMD--------GSLR 360 (685)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------~~I~~l~~spdg~~l~s~s~D--------g~I~ 360 (685)
.+..+...++|+++++++.++.|..+|..+|+.+.++..+. ..+..++..++|+.+++.... +..+
T Consensus 166 ~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~ 245 (276)
T 3no2_A 166 TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQ 245 (276)
T ss_dssp CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCS
T ss_pred CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCce
Confidence 77788889999999999988999999999999999987442 237888999999988877421 2345
Q ss_pred EEEc-CCCceeeEEee
Q 005656 361 IWDV-ILARQIDAIHV 375 (685)
Q Consensus 361 iwd~-~~~~~i~~~~~ 375 (685)
++++ ++|+.+-.+..
T Consensus 246 ~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 246 LVEIDSEGKVVWQLND 261 (276)
T ss_dssp EEEECTTSBEEEEECC
T ss_pred EEEECCCCCEEEEecC
Confidence 6666 56776666543
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.66 E-value=2.2e-14 Score=141.40 Aligned_cols=241 Identities=7% Similarity=-0.027 Sum_probs=171.1
Q ss_pred CeeEEEEeCCCcEEE-EecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCce
Q 005656 48 AIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 126 (685)
Q Consensus 48 ~V~~l~~sp~~~~l~-s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 126 (685)
...++++++++++++ +.+.++.|.+|+.... ........+...+.++++.++|+.+++.. ++.|.+||......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST----GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc----ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence 678999999999777 5577889999975443 21112223445788999999998555555 88899998654321
Q ss_pred eeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeE
Q 005656 127 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK 206 (685)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~ 206 (685)
. .+. ......+.
T Consensus 100 ~-~~~-------------------------------------------------------------------~~~~~~p~ 111 (270)
T 1rwi_B 100 T-VLP-------------------------------------------------------------------FDGLNYPE 111 (270)
T ss_dssp E-ECC-------------------------------------------------------------------CCSCSSEE
T ss_pred e-eee-------------------------------------------------------------------cCCcCCCc
Confidence 1 110 01124578
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 005656 207 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL 286 (685)
Q Consensus 207 ~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (685)
.++++++|+.+++...++.|.+|+..+....... ......+.+++++++++++++...++.|.+||..+...
T Consensus 112 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 112 GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred ceEECCCCCEEEEECCCCEEEEEECCCceeEeec--------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 9999999997777778899999976554332211 12334678899999998777776788999999887665
Q ss_pred EEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 287 KSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 287 ~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
....... ..+..++++++|.++++...++.|.+||............+...+.+++++++|+++++...++.|++|++.
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 4432222 568899999999877777778999999987665443323344678999999999988888899999999987
Q ss_pred CCce
Q 005656 366 LARQ 369 (685)
Q Consensus 366 ~~~~ 369 (685)
..+.
T Consensus 264 ~~~~ 267 (270)
T 1rwi_B 264 EHHH 267 (270)
T ss_dssp GGGS
T ss_pred Cccc
Confidence 6654
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.64 E-value=3.5e-14 Score=139.88 Aligned_cols=240 Identities=9% Similarity=-0.002 Sum_probs=167.5
Q ss_pred cEEEEEEccCCCCEEE-EEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 4 AVTALAFSSDGQPLLA-SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 4 ~V~~l~fspdg~~~la-tg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
...+++++++|+ +++ +.+.++.|.+||..++....... .+...+.++++.++++++++.. ++.|.+|+.+..
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~---- 97 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPF-NGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN---- 97 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EECCC-CSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS----
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceEee-CCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc----
Confidence 567999999998 777 54678899999987655433222 3445788999999999777766 889999976543
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
............+.++++.++|+.+++...++.|.+|+..+......
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------------------------------- 144 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--------------------------------- 144 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC---------------------------------
T ss_pred eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee---------------------------------
Confidence 22212123335688999999998777767778888885432211000
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
.......+..++++++|+..++...++.|.+||...+.......
T Consensus 145 -----------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~- 188 (270)
T 1rwi_B 145 -----------------------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF- 188 (270)
T ss_dssp -----------------------------------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-
T ss_pred -----------------------------------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc-
Confidence 00112346788999999977777778899999988765433211
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
.+...+.+++++++|..+++...++.|.+|+..+.........+ ..+..++++++|+++++...++.|++|+
T Consensus 189 -------~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 189 -------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp -------SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred -------cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 33367899999999977777767889999998765543322222 5688999999999888888899999999
Q ss_pred cCCCe
Q 005656 322 VVALR 326 (685)
Q Consensus 322 ~~~~~ 326 (685)
+...+
T Consensus 262 ~~~~~ 266 (270)
T 1rwi_B 262 SLEHH 266 (270)
T ss_dssp CCGGG
T ss_pred CCCcc
Confidence 87654
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=9.7e-13 Score=131.52 Aligned_cols=276 Identities=12% Similarity=0.056 Sum_probs=190.5
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
..+.+++++++|. +.++...++.|.+||.. ++........+...+.++++.+++.+.++...++.|..|+.+ + ..
T Consensus 20 ~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g--~~ 94 (300)
T 2qc5_A 20 SGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G--GF 94 (300)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S--CE
T ss_pred CCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C--Ce
Confidence 4678999999998 77776678999999988 555432222344679999999999988887778889888765 2 11
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
. ..........+.++++.++|+.+++...++.|..|+.. ++.. .+.
T Consensus 95 ~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~------------------------------- 140 (300)
T 2qc5_A 95 T-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYD------------------------------- 140 (300)
T ss_dssp E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEE-------------------------------
T ss_pred E-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ecc-------------------------------
Confidence 1 12222344678999999999877776667888888764 3221 110
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
. ......+..+++.++|+..++...++.|.+|+. ++.... +.
T Consensus 141 ----------------------~-------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~- 182 (300)
T 2qc5_A 141 ----------------------L-------------PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YP- 182 (300)
T ss_dssp ----------------------C-------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE-
T ss_pred ----------------------C-------------CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-ee-
Confidence 0 012346788999999996666666789999998 554432 21
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE-ee-cCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-WE-VGCSLVKIVYHRVNGLLATVADDLVIRLF 320 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~ 320 (685)
...+...+.++++++++...++....+.|.+||. ++..... .. ....+.+++++++|++.++...++.|..|
T Consensus 183 -----~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 256 (300)
T 2qc5_A 183 -----LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRI 256 (300)
T ss_dssp -----CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred -----CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence 1134457899999999987766666778999998 4444332 22 23567899999999877766667899999
Q ss_pred EcCCCeeEE-EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 321 DVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 321 d~~~~~~~~-~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
|. +++... .+......+.+++++++|++.++.. . .|..+|.
T Consensus 257 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 257 TN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 98 454332 2233456689999999998666554 4 6766664
No 199
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.64 E-value=6.7e-14 Score=144.71 Aligned_cols=291 Identities=11% Similarity=0.099 Sum_probs=189.0
Q ss_pred cCCCCEEEEEeCC----CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CCCcEEEEEecC
Q 005656 12 SDGQPLLASGASS----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDT 77 (685)
Q Consensus 12 pdg~~~latg~~d----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D~~v~iWd~~~ 77 (685)
++++.++++...+ +.|.++|..+++.+..+..+. .+ .++++||+++|+.+. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 4566344444433 799999999999999998443 34 899999999887775 367899998776
Q ss_pred CCCCCceeEecc-c------CCCCCeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeEechhhHHHHHhhccccccc
Q 005656 78 TDGDPRLLRFRS-G------HSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 148 (685)
Q Consensus 78 ~~~~~~~~~~~~-~------h~~~v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (685)
. +.+..+. + ....+..+.|+|||++++++.. ++.|.+.|+.+.+....+...
T Consensus 159 ~----~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~--------------- 219 (426)
T 3c75_H 159 F----LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP--------------- 219 (426)
T ss_dssp C----CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---------------
T ss_pred C----cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC---------------
Confidence 6 4444332 1 1245678999999999999874 578999999988876665310
Q ss_pred cccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEE
Q 005656 149 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIE 227 (685)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~ 227 (685)
. +....|+| ..+++.+.||.+.
T Consensus 220 ------------------------------------------------------g---~~~~~p~g~~~~v~~~~dG~~~ 242 (426)
T 3c75_H 220 ------------------------------------------------------D---CYHIFPASPTVFYMNCRDGSLA 242 (426)
T ss_dssp ------------------------------------------------------S---EEEEEEEETTEEEEEETTSSEE
T ss_pred ------------------------------------------------------C---ceeeccCCCcEEEEEcCCCCEE
Confidence 0 01111211 2333334444444
Q ss_pred EEECCCCccccccccccccccCCCCcC-EEEEEEcCCCCEEEEEECCCeEEEEECCCCceE--EEeec-----------C
Q 005656 228 RFNLQSGISRGSYLDMSERSNYAHNGE-VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRWEV-----------G 293 (685)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~-----------~ 293 (685)
+.+..+++....... .......+ ...+.+.+++..++..+..+.|.+.|..+.... ..+.. .
T Consensus 243 ~V~~~~~~v~~~~~~----~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 243 RVDFADGETKVTNTE----VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp EEECCTTCCEEEECC----CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred EEECCCCcEEEEeee----eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 444433322210000 00001111 113467888888877788899999998765432 11111 1
Q ss_pred CceeEEEEeecCCEEEEEeC----------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEe-CCCcEEE
Q 005656 294 CSLVKIVYHRVNGLLATVAD----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDGSLRI 361 (685)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s-~Dg~I~i 361 (685)
.....++++|+++.+++... ++.|.++|..+++.+.++.... ....++|+|||+ +++++. .++.|.|
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsV 397 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHI 397 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEE
Confidence 22233789999997777642 3579999999999999887432 478999999999 888887 5899999
Q ss_pred EEcCCCceeeEE-eeccceEEEEEcCC
Q 005656 362 WDVILARQIDAI-HVDVSITALSLSPN 387 (685)
Q Consensus 362 wd~~~~~~i~~~-~~~~~v~~v~~spd 387 (685)
+|+.+++.+..+ ....... +..+||
T Consensus 398 ID~~t~kvv~tI~~vG~~P~-~i~~~~ 423 (426)
T 3c75_H 398 YDAATGEELRSVDQLGRGPQ-IITTHD 423 (426)
T ss_dssp EETTTCCEEEEECCCSSSCC-EEECCC
T ss_pred EECCCCCEEEEecCCCCCCc-EEEcCC
Confidence 999999999887 3333222 444454
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.63 E-value=1.3e-12 Score=134.41 Aligned_cols=274 Identities=8% Similarity=-0.039 Sum_probs=185.6
Q ss_pred EeCCCcEEEEecC--CC---cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe----------CCCceEE
Q 005656 54 FFANEPVLMSASA--DN---SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG----------QDRAFRL 118 (685)
Q Consensus 54 ~sp~~~~l~s~s~--D~---~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s----------~dg~i~v 118 (685)
..|++++++++.. .+ +|.++|..++ +.+..+.....+ .+.++|||++++.+. .++.|.+
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~----~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSG----SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCC----eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence 3467776666653 22 7889988766 555555443333 999999999999886 3678999
Q ss_pred EEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCC
Q 005656 119 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 198 (685)
Q Consensus 119 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 198 (685)
||..+.+....+..... ..
T Consensus 102 iD~~t~~~~~~i~~~~~--------------------------------------------------------~~----- 120 (373)
T 2mad_H 102 FDPVTFLPIADIELPDA--------------------------------------------------------PR----- 120 (373)
T ss_pred EECCCCcEEEEEECCCc--------------------------------------------------------cc-----
Confidence 99977665554421100 00
Q ss_pred CCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccc-cccccccccCCCCcCEEEEEEcCCC-CEEEEEECCC
Q 005656 199 PENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGS-YLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG 274 (685)
Q Consensus 199 ~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg 274 (685)
.........++++|+|++++++.. ++.|.++| .+++.... +. ..+ ++.+.|.+ +.+++.+.||
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~---------~~~---~~~~~~~~~~~~~~~~~dg 187 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS---------SPT---CYHIHPGAPSTFYLLCAQG 187 (373)
T ss_pred cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC---------CCc---eEEEEeCCCceEEEEcCCC
Confidence 000123458899999999999874 57899999 99887665 42 112 23444554 4566777899
Q ss_pred eEEEEECCCCceEEEee-----c-CCc-eeEEEEeecCCEEEEEeCCCeEEEEEcCCC--eeEEEEecC----------C
Q 005656 275 DIKVWDFKGRDLKSRWE-----V-GCS-LVKIVYHRVNGLLATVADDLVIRLFDVVAL--RMVRKFEGH----------T 335 (685)
Q Consensus 275 ~i~iwd~~~~~~~~~~~-----~-~~~-i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h----------~ 335 (685)
.+.++|. +++...... . ..+ .....+.+++..++..+..+.+.+.|+.++ +.+..+.-. .
T Consensus 188 ~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p 266 (373)
T 2mad_H 188 GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP 266 (373)
T ss_pred CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceec
Confidence 9999999 777664322 1 122 123456777665555557889999999765 333333211 1
Q ss_pred CCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC-eEEEEEeCCCeEEEE
Q 005656 336 DRITDFCFSEDGKWLLSSGM----------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMD-VLATAHVDQNGVYLW 404 (685)
Q Consensus 336 ~~I~~l~~spdg~~l~s~s~----------Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~-~Lat~~~d~~~I~lW 404 (685)
.....++++||++.++.+.. ++.|.++|..+++.+..+.......+++|+|||+ .++++....+.|.+|
T Consensus 267 ~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~Vi 346 (373)
T 2mad_H 267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIY 346 (373)
T ss_pred CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEE
Confidence 22445789999988777643 3579999999999999998877899999999999 777777544599999
Q ss_pred EcCC
Q 005656 405 VNRC 408 (685)
Q Consensus 405 ~~~~ 408 (685)
|...
T Consensus 347 D~~t 350 (373)
T 2mad_H 347 DAGA 350 (373)
T ss_pred ECCC
Confidence 8543
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.62 E-value=4.4e-13 Score=135.16 Aligned_cols=198 Identities=12% Similarity=0.063 Sum_probs=141.9
Q ss_pred CCeEEEEEccC-CCEEEEEecCCcEEEEECCCCccccc-cccccccccCCCCcCEEEEEEcCCCCEEEEEECC-------
Q 005656 203 TAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGS-YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH------- 273 (685)
Q Consensus 203 ~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d------- 273 (685)
..+.+++++++ |+ +++++..+.|.+||.. +..... ... ....+...+.+++++++|+++++...+
T Consensus 71 ~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~----~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 71 GIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKD----SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY 144 (314)
T ss_dssp CCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBC----TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred CCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEEEecc----CCCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence 45789999999 65 4444445579999998 654322 110 000223468899999999887776655
Q ss_pred --------CeEEEEECCCCceEEEeecCCceeEEEEe----ecCCEEEEE-eCCCeEEEEEcC-CCe-----eEEEEecC
Q 005656 274 --------GDIKVWDFKGRDLKSRWEVGCSLVKIVYH----RVNGLLATV-ADDLVIRLFDVV-ALR-----MVRKFEGH 334 (685)
Q Consensus 274 --------g~i~iwd~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~I~i~d~~-~~~-----~~~~~~~h 334 (685)
+.|..||.. ++.............++++ |+++.++++ ..++.|.+||.. +++ ....+.++
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred cccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence 577788766 5554444434556889999 999765555 567899999986 454 22333344
Q ss_pred C-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec-cceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 335 T-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 335 ~-~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
. ..+..++++++|+++++...++.|.+||..+++.+..+..+ ..+.+++|+|+|+.|++++.+.+.|..|+..
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 4 66889999999998888878889999999878887777766 4599999999999777776655589998753
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=8.8e-14 Score=157.83 Aligned_cols=277 Identities=10% Similarity=-0.002 Sum_probs=181.5
Q ss_pred eCCCcEEEEecCCC---cEEEEEecCC---CCCCceeEe----cccCCCCCeEEEEecCCCEEEEEeCC-----CceEEE
Q 005656 55 FANEPVLMSASADN---SIKMWIFDTT---DGDPRLLRF----RSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLF 119 (685)
Q Consensus 55 sp~~~~l~s~s~D~---~v~iWd~~~~---~~~~~~~~~----~~~h~~~v~~i~~~~~~~~l~s~s~d-----g~i~vw 119 (685)
+|+|++++....++ .-.+|..+.. .+..+.+.. -.+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48899887665544 3678877654 333333311 12344467889999999999877654 359999
Q ss_pred EeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCC
Q 005656 120 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 199 (685)
Q Consensus 120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 199 (685)
|+.+++......
T Consensus 195 dl~tg~~~~~~~-------------------------------------------------------------------- 206 (741)
T 1yr2_A 195 GVADGKPLADEL-------------------------------------------------------------------- 206 (741)
T ss_dssp ETTTCCEEEEEE--------------------------------------------------------------------
T ss_pred ECCCCCCCCccC--------------------------------------------------------------------
Confidence 998776432110
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCc--------------EEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCC
Q 005656 200 ENPTAVKACTISACGNFAVLGTAGGW--------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 265 (685)
Q Consensus 200 ~~~~~v~~~~~s~~g~~l~~g~~dg~--------------i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 265 (685)
....+..++|+|+ +.++.+..++. |++|++.++........ ....+...+.++.|+|+|+
T Consensus 207 -~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~----~~~~~~~~~~~~~~SpDG~ 280 (741)
T 1yr2_A 207 -KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF----ATPELPKRGHGASVSSDGR 280 (741)
T ss_dssp -EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE----CCTTCTTCEEEEEECTTSC
T ss_pred -CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe----ccCCCCeEEEEEEECCCCC
Confidence 0011235789999 88888776543 89999987764322110 1113444688999999999
Q ss_pred EEEEEECCC-----eEEEEECCCC--c-eEEEeecCCceeEEEEeecCCEEEEEeC----CCeEEEEEcCCC--eeEEEE
Q 005656 266 LMISAGYHG-----DIKVWDFKGR--D-LKSRWEVGCSLVKIVYHRVNGLLATVAD----DLVIRLFDVVAL--RMVRKF 331 (685)
Q Consensus 266 ~l~s~s~dg-----~i~iwd~~~~--~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~--~~~~~~ 331 (685)
+|+..+.++ .|++||+.++ . .............. ++|+|+.|+..+. ++.|.+||+.++ +....+
T Consensus 281 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 281 WVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp EEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE
T ss_pred EEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe
Confidence 988877544 8999999877 4 33333333334444 4589998888776 356999999885 344444
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCceeeEEeec--cceEEEEEcCCCCeEEEEEeCC---CeEEEEE
Q 005656 332 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVD--VSITALSLSPNMDVLATAHVDQ---NGVYLWV 405 (685)
Q Consensus 332 ~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~-~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~---~~I~lW~ 405 (685)
..+...+..++|+ ++.++++...|+..++|.+. ++.....+..+ ..+..++++|+++.|+.+..+. ..|++|+
T Consensus 360 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 360 PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 4555567778887 56677888889988777665 46666666543 4488999999998776544321 3799998
Q ss_pred cC
Q 005656 406 NR 407 (685)
Q Consensus 406 ~~ 407 (685)
..
T Consensus 439 ~~ 440 (741)
T 1yr2_A 439 PA 440 (741)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=1.5e-13 Score=135.33 Aligned_cols=238 Identities=12% Similarity=0.082 Sum_probs=171.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEeecccc-cCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccC-
Q 005656 14 GQPLLASGASSGVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH- 91 (685)
Q Consensus 14 g~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h- 91 (685)
++ +|++++.++.|.+||.++++.+..+. .+. ..+.++.++|+|+++++ .++.|..||. ++ +.+..+..+
T Consensus 5 ~~-~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G----~~~W~~~~~~ 75 (276)
T 3no2_A 5 QH-LLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATKAGEILFS--YSKGAKMITR-DG----RELWNIAAPA 75 (276)
T ss_dssp CE-EEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TS----CEEEEEECCT
T ss_pred Cc-EEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CC----CEEEEEcCCC
Confidence 45 89999999999999999999999988 554 57899999999999984 4678888876 44 455555443
Q ss_pred CCCCeEEEEecCCCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcce
Q 005656 92 SAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 170 (685)
Q Consensus 92 ~~~v~~i~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (685)
...+.++.+.++|+.+++.+. ++.+..++. +++....+.
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~--------------------------------------- 115 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTE--------------------------------------- 115 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEE---------------------------------------
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEe---------------------------------------
Confidence 346788999999999998887 666666654 444433331
Q ss_pred EEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCC
Q 005656 171 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 250 (685)
Q Consensus 171 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 250 (685)
+.... .........+++.++|+++++.+.++.|..||.. |+....+..
T Consensus 116 --------------~~~~~---------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~-------- 163 (276)
T 3no2_A 116 --------------FETGI---------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL-------- 163 (276)
T ss_dssp --------------ECCSC---------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC--------
T ss_pred --------------ccCCC---------CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC--------
Confidence 10000 0011123345678999999999999999999998 888877641
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-------CceeEEEEeecCCEEEEEeCC--------C
Q 005656 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLATVADD--------L 315 (685)
Q Consensus 251 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~d--------g 315 (685)
...+.++.+.++++.+++++.++.|..+|..+++.+.++... ..+..+...++|+++++.... +
T Consensus 164 -~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~ 242 (276)
T 3no2_A 164 -SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGK 242 (276)
T ss_dssp -SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSC
T ss_pred -CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccC
Confidence 234556788899999998888889999999999999888642 126677778888877776422 2
Q ss_pred eEEEEEc-CCCeeEEEEec
Q 005656 316 VIRLFDV-VALRMVRKFEG 333 (685)
Q Consensus 316 ~I~i~d~-~~~~~~~~~~~ 333 (685)
..+++.+ .+++.+.++..
T Consensus 243 ~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 243 HPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp CCSEEEECTTSBEEEEECC
T ss_pred CceEEEECCCCCEEEEecC
Confidence 3345555 45666666654
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.59 E-value=1.7e-13 Score=155.55 Aligned_cols=292 Identities=11% Similarity=0.036 Sum_probs=174.1
Q ss_pred ccCCCCEEEEEe-CCC--cEEEE--eCC---CCeeeEE-----eecccccCeeEEEEeCCCcEEEEecCC-----CcEEE
Q 005656 11 SSDGQPLLASGA-SSG--VISIW--NLE---KRRLQSV-----IREAHDNAIISLHFFANEPVLMSASAD-----NSIKM 72 (685)
Q Consensus 11 spdg~~~latg~-~dg--~I~vw--d~~---~~~~~~~-----~~~~h~~~V~~l~~sp~~~~l~s~s~D-----~~v~i 72 (685)
+|||+ .++... ..+ .-.+| +.. .+..... +..+|...+.+++|||||++|+.++.+ .+|++
T Consensus 115 ~pdG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGA-SVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETT-EEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EEECC-EEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 48998 555433 333 24444 444 3433322 222444578899999999998877543 46999
Q ss_pred EEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccC
Q 005656 73 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 152 (685)
Q Consensus 73 Wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (685)
||++++. .+.. ..+...+..++|+|| +.|+.++.++..+- +. .
T Consensus 194 ~dl~tg~----~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~-----~~----~---------------------- 236 (741)
T 1yr2_A 194 VGVADGK----PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEG-----QA----F---------------------- 236 (741)
T ss_dssp EETTTCC----EEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------------------------------------
T ss_pred EECCCCC----CCCc-cCCCceeccEEEECC-CEEEEEEecCcccc-----cc----c----------------------
Confidence 9988763 3322 112223467899999 99998887654100 00 0
Q ss_pred ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-----cEE
Q 005656 153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-----WIE 227 (685)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-----~i~ 227 (685)
........++.|++.........+.....+...+..+.|||+|+++++...++ .|+
T Consensus 237 -------------------~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 237 -------------------QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH 297 (741)
T ss_dssp ---------------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred -------------------ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence 00000112233333222111111111113334578999999999998887654 899
Q ss_pred EEECCCC--ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC----CeEEEEECCCC--ceEEEeecC-CceeE
Q 005656 228 RFNLQSG--ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH----GDIKVWDFKGR--DLKSRWEVG-CSLVK 298 (685)
Q Consensus 228 ~~d~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~--~~~~~~~~~-~~i~~ 298 (685)
+||+.++ .....+. .+...+.... +|+|+.|+..+.+ +.|.+||+.++ .....+... ..+..
T Consensus 298 ~~d~~~~~~~~~~~l~--------~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~ 368 (741)
T 1yr2_A 298 VARVTNGKIGPVTALI--------PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES 368 (741)
T ss_dssp EEEEETTEECCCEEEE--------CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred EEECCCCCCcccEEec--------CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence 9999876 3122221 3334444443 4888888877753 45999999874 333333333 34556
Q ss_pred EEEeecCCEEEEEeCCCeEEEEEcC-CCeeEEEEec-CCCCeEEEEEcCCCCEEEEE-e---CCCcEEEEEcCCCce
Q 005656 299 IVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEG-HTDRITDFCFSEDGKWLLSS-G---MDGSLRIWDVILARQ 369 (685)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~-s---~Dg~I~iwd~~~~~~ 369 (685)
+.++ ++.++++...|+..+||.+. +++..+.+.. +.+.|..++++|+++.|+.. + ..++|++||+.+++.
T Consensus 369 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 369 VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 7776 56688888889887777554 4666666664 36778999999998866522 2 347899999988763
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=3.6e-13 Score=136.61 Aligned_cols=277 Identities=9% Similarity=0.018 Sum_probs=189.7
Q ss_pred EEEeCCCcEEEEecC-----CCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe----------CCCce
Q 005656 52 LHFFANEPVLMSASA-----DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG----------QDRAF 116 (685)
Q Consensus 52 l~~sp~~~~l~s~s~-----D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s----------~dg~i 116 (685)
....|+++.++.... ++.|.+.|..+. +.+..+.....+ . +.++|||+++++++ .++.|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~----~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG----RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT----EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCC----eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence 445688887777654 678999988776 666665544444 4 99999999988775 36789
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
.+||..+.+....+..+.- ++
T Consensus 112 sviD~~t~~v~~~I~v~~g--------------------------------------------------------~r--- 132 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDA--------------------------------------------------------PR--- 132 (386)
T ss_dssp EEECTTTCCEEEEEEETTC--------------------------------------------------------CC---
T ss_pred EEEECCCCeEEEEEECCCc--------------------------------------------------------cc---
Confidence 9999988876665531100 00
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC
Q 005656 197 PCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 274 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg 274 (685)
.........++++|+|++++++.. ++.|.++|+.+++....+.. . + . ...+....+.+++.+.||
T Consensus 133 --~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-------~--g-~-~~~~P~g~~~~~~~~~DG 199 (386)
T 3sjl_D 133 --FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-------P--D-C-YHIFPTAPDTFFMHCRDG 199 (386)
T ss_dssp --CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------C--S-E-EEEEEEETTEEEEEETTS
T ss_pred --cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-------C--C-c-ceeecCCCceeEEECCCC
Confidence 001224557899999999999874 68999999999998877631 1 1 1 122333446677888899
Q ss_pred eEEEEECCC-CceEEEeecC-----Cce-eEEEEe-ecCCEEEEEeCCCeEEEEEcCCCe--eEEEEe---------c-C
Q 005656 275 DIKVWDFKG-RDLKSRWEVG-----CSL-VKIVYH-RVNGLLATVADDLVIRLFDVVALR--MVRKFE---------G-H 334 (685)
Q Consensus 275 ~i~iwd~~~-~~~~~~~~~~-----~~i-~~~~~~-~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~---------~-h 334 (685)
.+.+.++.+ ++........ .++ ....|. ++|++++ .+.+|.|+++|..++. .+..+. + .
T Consensus 200 ~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 200 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence 999998876 5543322111 122 124554 5665544 5568999999997653 333332 0 1
Q ss_pred CCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC-eEEEEEeCCCeEEE
Q 005656 335 TDRITDFCFSEDGKWLLSSGM----------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMD-VLATAHVDQNGVYL 403 (685)
Q Consensus 335 ~~~I~~l~~spdg~~l~s~s~----------Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~-~Lat~~~d~~~I~l 403 (685)
.+....++++++++.++.+.. .+.|.+.|+.+++.+..+.....+.+++++||++ +|+++...++.|.+
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsV 358 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 358 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEE
Confidence 123345788999998877642 2579999999999999999888899999999997 77887765569999
Q ss_pred EEcC
Q 005656 404 WVNR 407 (685)
Q Consensus 404 W~~~ 407 (685)
+|..
T Consensus 359 iD~~ 362 (386)
T 3sjl_D 359 HDAE 362 (386)
T ss_dssp EETT
T ss_pred EECC
Confidence 9853
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.58 E-value=8.4e-12 Score=124.64 Aligned_cols=273 Identities=11% Similarity=0.024 Sum_probs=191.8
Q ss_pred cccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE-ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec
Q 005656 45 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 123 (685)
Q Consensus 45 h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~ 123 (685)
....+.++++.++|.+.++...++.|.+|+.. + +... ....+...+.++++.++|+.+++...++.|..||..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G----RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S----CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C----ceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 45678999999999988888788999999765 3 2222 223344678999999999877776667888888765
Q ss_pred CceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCC
Q 005656 124 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 203 (685)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 203 (685)
++. ..+. . .....
T Consensus 92 g~~-~~~~-----------------------------------------------------~-------------~~~~~ 104 (300)
T 2qc5_A 92 GGF-TEYP-----------------------------------------------------L-------------PQPDS 104 (300)
T ss_dssp SCE-EEEE-----------------------------------------------------C-------------SSTTC
T ss_pred CCe-EEec-----------------------------------------------------C-------------CCCCC
Confidence 322 1110 0 01235
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 283 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (685)
.+..+++.++|+..++...++.|..||.. +....... ......+.+++++++++..++...++.|..||. +
T Consensus 105 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~-------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 105 GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDL-------PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEEC-------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred CCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccC-------CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 57899999999988877778899999987 54432111 124457899999999996666666789999998 5
Q ss_pred CceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656 284 RDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSL 359 (685)
Q Consensus 284 ~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~-~~~h~~~I~~l~~spdg~~l~s~s~Dg~I 359 (685)
++... +.. ...+..++++++|.++++....+.|.+||. +++.... +..+...+.+++++++|++.++...++.|
T Consensus 176 g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 253 (300)
T 2qc5_A 176 GKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQI 253 (300)
T ss_dssp CCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred CcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeE
Confidence 55443 322 246789999999987777777789999998 5544332 33455678999999999977776667899
Q ss_pred EEEEcCCCceeeEEeec---cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 360 RIWDVILARQIDAIHVD---VSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 360 ~iwd~~~~~~i~~~~~~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
..|+. +++.. .+... ..+.+++++++|.+.++.. + .|..++.
T Consensus 254 ~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~--~-~i~~~~p 298 (300)
T 2qc5_A 254 GRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK--C-KIGKLNL 298 (300)
T ss_dssp EEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS--S-EEEEEEE
T ss_pred EEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc--C-ceEEeCC
Confidence 99997 45443 33322 3488999999998665543 3 6766653
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.54 E-value=2e-12 Score=130.30 Aligned_cols=241 Identities=12% Similarity=0.056 Sum_probs=165.5
Q ss_pred ccCeeEEEEeCCCcEEEE-------ecCCCcEEEEEecCCCCCCceeEec----ccCCCCCeEEEEecC-CCEEEEEeCC
Q 005656 46 DNAIISLHFFANEPVLMS-------ASADNSIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYAN-GRHILSAGQD 113 (685)
Q Consensus 46 ~~~V~~l~~sp~~~~l~s-------~s~D~~v~iWd~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~-~~~l~s~s~d 113 (685)
-....+++|++++.++++ +..++.|.+|+..++ +..... .++...+.+++++++ |+.++ ++..
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~ 91 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----KKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMR 91 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----CEEEEECCEETTEECCEEEEEECSSSSEEEE-EETT
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----cEEEEEecccCCCCCCCceEEEecCCCcEEE-EECC
Confidence 345689999999988888 567889999976554 222111 124567899999999 65444 4444
Q ss_pred CceEEEEeecCceeeE-echhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCc
Q 005656 114 RAFRLFSVIQDQQSRE-LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 192 (685)
Q Consensus 114 g~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 192 (685)
+.|.+||.. ++.... ...
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~------------------------------------------------------------ 110 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKD------------------------------------------------------------ 110 (314)
T ss_dssp TEEEEEETT-SCEEECCSBC------------------------------------------------------------
T ss_pred CCEEEEeCC-CCEEEEEecc------------------------------------------------------------
Confidence 578888875 432111 100
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEEEecC---------------CcEEEEECCCCccccccccccccccCCCCcCEEE
Q 005656 193 HILRPCPENPTAVKACTISACGNFAVLGTAG---------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG 257 (685)
Q Consensus 193 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 257 (685)
........+.+++++++|+..++...+ +.|..|+.. +...... .+.....+
T Consensus 111 ----~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~---------~~~~~~~~ 176 (314)
T 1pjx_A 111 ----SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD---------TAFQFPNG 176 (314)
T ss_dssp ----TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE---------EEESSEEE
T ss_pred ----CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec---------cCCCCcce
Confidence 000112346789999999877776655 578888765 4432221 23345688
Q ss_pred EEEc----CCCCEEEEE-ECCCeEEEEECC-CCce-----EEEeecC--CceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656 258 VACD----STNTLMISA-GYHGDIKVWDFK-GRDL-----KSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 258 l~~~----~~~~~l~s~-s~dg~i~iwd~~-~~~~-----~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 324 (685)
++++ ++++.++.+ ..++.|.+||.. ++.. ...+... ..+..++++++|+++++...++.|.+||..+
T Consensus 177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~ 256 (314)
T 1pjx_A 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 9999 999766555 467899999986 4432 1222222 4578899999999888887889999999987
Q ss_pred CeeEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCC
Q 005656 325 LRMVRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDVIL 366 (685)
Q Consensus 325 ~~~~~~~~~h~~~I~~l~~spdg~~l~-s~s~Dg~I~iwd~~~ 366 (685)
++.+..+..+...+.+++|+|+|++|+ +...++.|..|++..
T Consensus 257 g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 887777777778899999999999555 445667899999864
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.49 E-value=2.6e-12 Score=132.86 Aligned_cols=274 Identities=9% Similarity=0.031 Sum_probs=186.3
Q ss_pred CCCcEEEEecC-C----CcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe----------CCCceEEEE
Q 005656 56 ANEPVLMSASA-D----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG----------QDRAFRLFS 120 (685)
Q Consensus 56 p~~~~l~s~s~-D----~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s----------~dg~i~vwd 120 (685)
++++.++.+.. + ++|.+.|..+. +.+..+..-..+ .+.++|||++++++. .++.|.++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~----~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG----RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT----EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC----EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 45565554433 3 68999998877 666665544444 899999999888876 367899999
Q ss_pred eecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCC
Q 005656 121 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 200 (685)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 200 (685)
..+.+....+..... .. ..
T Consensus 156 ~~t~~vv~~I~v~g~--------------------------------------------------------~r-----~~ 174 (426)
T 3c75_H 156 PVTFLPIADIELPDA--------------------------------------------------------PR-----FL 174 (426)
T ss_dssp TTTCCEEEEEEETTC--------------------------------------------------------CC-----CC
T ss_pred CCCCcEEEEEECCCc--------------------------------------------------------cc-----cc
Confidence 988877665531100 00 00
Q ss_pred CCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEE
Q 005656 201 NPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIK 277 (685)
Q Consensus 201 ~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~ 277 (685)
.......+.++|+|++++++.. ++.|.++|+.+++....+.. +. . ....|++ +.+++.+.||.+.
T Consensus 175 ~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v-------~g---~--~~~~p~g~~~~v~~~~dG~~~ 242 (426)
T 3c75_H 175 VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-------PD---C--YHIFPASPTVFYMNCRDGSLA 242 (426)
T ss_dssp BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------CS---E--EEEEEEETTEEEEEETTSSEE
T ss_pred cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc-------CC---c--eeeccCCCcEEEEEcCCCCEE
Confidence 0123446799999999999874 57899999999988777641 11 1 2223332 5566677788888
Q ss_pred EEECCCCceEEE----eecC-Cc-eeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE--EEEec----------CCCCeE
Q 005656 278 VWDFKGRDLKSR----WEVG-CS-LVKIVYHRVNGLLATVADDLVIRLFDVVALRMV--RKFEG----------HTDRIT 339 (685)
Q Consensus 278 iwd~~~~~~~~~----~~~~-~~-i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~--~~~~~----------h~~~I~ 339 (685)
+.+..+++.... +... .+ ...+.+.+++..++.....+.+.+.|....... ..+.- ......
T Consensus 243 ~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 243 RVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp EEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred EEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 888765554422 1111 11 123567888887777788899999998765422 11110 011122
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCC-eEEEEEeCCCeEEEEEcCC
Q 005656 340 DFCFSEDGKWLLSSGM----------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMD-VLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 340 ~l~~spdg~~l~s~s~----------Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~-~Lat~~~d~~~I~lW~~~~ 408 (685)
.++++||++.++.+.. ++.|.++|..+.+.+..+.......+++|+|||+ +++++....+.|.++|...
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 3689999987776542 3579999999999999999888899999999999 8988886556999999643
No 209
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.49 E-value=2.6e-12 Score=130.70 Aligned_cols=278 Identities=10% Similarity=-0.054 Sum_probs=185.4
Q ss_pred EEEEEeCCC----cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEec----------CCCcEEEEEecCCCCCC
Q 005656 17 LLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 17 ~latg~~dg----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~D~~v~iWd~~~~~~~~ 82 (685)
+.++...++ .|.++|..+++.+.++..+.. + .+.++||+++++++. .+++|.+||..+.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~---- 106 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---- 106 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC----
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC----
Confidence 445544455 788999999999999985554 4 799999999888775 3789999998887
Q ss_pred ceeEecccC-------CCCCeEEEEecCCCEEEEEeC--CCceEE--EEeecCceeeEechhhHHHHHhhcccccccccc
Q 005656 83 RLLRFRSGH-------SAPPLCIRFYANGRHILSAGQ--DRAFRL--FSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 151 (685)
Q Consensus 83 ~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~s~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (685)
+.+..+..+ ...+..+.|+|||++++++.. +..+.+ +|+.+ ...+..
T Consensus 107 ~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v------------------- 164 (368)
T 1mda_H 107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS------------------- 164 (368)
T ss_dssp CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-------------------
T ss_pred CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-------------------
Confidence 555554322 135788999999999998875 356888 88765 222210
Q ss_pred CceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEE
Q 005656 152 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFN 230 (685)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d 230 (685)
... ..+.|+| ..+++.+.+|.+.+.+
T Consensus 165 ------------------------------------------------~~~-----~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 165 ------------------------------------------------ASC-----FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp ------------------------------------------------SSC-----CCCEEEETTEEECCCCTTSCEEEE
T ss_pred ------------------------------------------------CCc-----eEEccCCCeEEEEEcCCCCEEEEE
Confidence 000 0112222 2334445667777777
Q ss_pred CCC-----CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEEEeecC----------
Q 005656 231 LQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG---------- 293 (685)
Q Consensus 231 ~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~---------- 293 (685)
+.+ ++...... . .......+. . .+++..++..+. +.+.+.|+.+.. ....+...
T Consensus 192 ~~~~~~~~~~v~~~~t--~--~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~ 262 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCT--G--AQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR 262 (368)
T ss_dssp CCSSCCCCEECCCCSC--T--TSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred CccccccCCeEEEEee--e--eeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc
Confidence 765 33221100 0 000112233 3 566666666666 999999987542 23322211
Q ss_pred -CceeEEEEeecCCEEEEEeC---------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEe-CCCcEEE
Q 005656 294 -CSLVKIVYHRVNGLLATVAD---------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDGSLRI 361 (685)
Q Consensus 294 -~~i~~~~~~~~~~~l~~~~~---------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~-~l~s~s-~Dg~I~i 361 (685)
.....++++|+++.++++.. ++.+.++|+.+++.+.++.... ....++|+|||+ .+++.. .+++|.+
T Consensus 263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsV 341 (368)
T 1mda_H 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDI 341 (368)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred cCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEE
Confidence 12223789999998877643 2356699999999998887443 588999999998 455666 5999999
Q ss_pred EEcCCCceeeEEeeccceEEEEEcC
Q 005656 362 WDVILARQIDAIHVDVSITALSLSP 386 (685)
Q Consensus 362 wd~~~~~~i~~~~~~~~v~~v~~sp 386 (685)
+|+.+++.+..+........+++.+
T Consensus 342 ID~~t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 342 YDAASDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp EESSSCEEEEECCCCSCCCEEECCC
T ss_pred EECCCCcEEEEEECCCCCCEEEeec
Confidence 9999999999998887777777765
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.49 E-value=3e-11 Score=126.16 Aligned_cols=242 Identities=10% Similarity=0.121 Sum_probs=163.6
Q ss_pred cCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC--ceEEEEeecC
Q 005656 47 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--AFRLFSVIQD 124 (685)
Q Consensus 47 ~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg--~i~vwd~~~~ 124 (685)
.....++|+++++++++...++.|++||.+.+ .+...... ..... ++|+++++.|+++..++ .|.+|+...+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g----~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN----KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT----EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC----EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 35789999999998888888899999988764 33333222 33344 99999999999888766 5777765443
Q ss_pred ceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCC
Q 005656 125 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA 204 (685)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 204 (685)
.....+.. ........
T Consensus 205 ~~~~~~g~----------------------------------------------------------------~~~~~~~~ 220 (409)
T 3hrp_A 205 WAPTRIGQ----------------------------------------------------------------LGSTFSGK 220 (409)
T ss_dssp TCEEEEEE----------------------------------------------------------------CCTTSCSC
T ss_pred ceeEEeee----------------------------------------------------------------ccchhcCC
Confidence 32111100 00012345
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCE--EEEEEcCC-CCEEEEEECCCeEEEEEC
Q 005656 205 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV--VGVACDST-NTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 205 v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~~~-~~~l~s~s~dg~i~iwd~ 281 (685)
+.+++++|++..++++..++.|+.||..++..... ... ...++...- ..++|+|+ +.++++...++.|+.|+.
T Consensus 221 p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~-~~~---~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~ 296 (409)
T 3hrp_A 221 IGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI-KQL---ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP 296 (409)
T ss_dssp CCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE-EEC---CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE-ecc---cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence 67889999666666677789999999987753221 000 001222222 39999995 555555567789999997
Q ss_pred CCCceEEEeecC---------------CceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecC-----------
Q 005656 282 KGRDLKSRWEVG---------------CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGH----------- 334 (685)
Q Consensus 282 ~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h----------- 334 (685)
... ........ .....++++++|+++++-. .++.|+.||+.++.. .++.++
T Consensus 297 ~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~ 374 (409)
T 3hrp_A 297 DGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTP 374 (409)
T ss_dssp TCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBST
T ss_pred CCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCCh
Confidence 654 22222111 2478899999999777777 789999999888864 445544
Q ss_pred ----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 335 ----TDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 335 ----~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
-.....++++++|.++++-..++.|+.+++
T Consensus 375 ~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 375 LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 245889999999888888888888988775
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.48 E-value=2.4e-11 Score=121.33 Aligned_cols=189 Identities=11% Similarity=0.126 Sum_probs=133.0
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC---------
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------- 273 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--------- 273 (685)
..+.+++++++|+++ ++. ++.|.+||..++........ ........+.+++++|+|+++++...+
T Consensus 54 ~~~~~i~~~~dG~l~-v~~-~~~l~~~d~~~g~~~~~~~~----~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 54 APVSSVALRQSGGYV-ATI-GTKFCALNWKEQSAVVLATV----DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp SCEEEEEEBTTSSEE-EEE-TTEEEEEETTTTEEEEEEEC----CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred CceEEEEECCCCCEE-EEE-CCeEEEEECCCCcEEEEEec----CCCCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence 468899999999944 444 56799999988765432210 000123568899999999976654321
Q ss_pred CeEEEEECC-CCceEEEeecCCceeEEEEeecCCEEE-EEeCCCeEEEEEc--CCCee-----EEEEecCCCCeEEEEEc
Q 005656 274 GDIKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNGLLA-TVADDLVIRLFDV--VALRM-----VRKFEGHTDRITDFCFS 344 (685)
Q Consensus 274 g~i~iwd~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~I~i~d~--~~~~~-----~~~~~~h~~~I~~l~~s 344 (685)
..-.+|.+. .++.............++|+|+++.|+ +.+.++.|.+||+ .++.. +..+..+.+.+..++++
T Consensus 128 ~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 128 HQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID 207 (297)
T ss_dssp TCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred CCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence 223445444 234433333335568899999998665 4555789999997 45543 22333344678899999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceeeEEeecc-ceEEEEEc-CCCCeEEEEEeC
Q 005656 345 EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLS-PNMDVLATAHVD 397 (685)
Q Consensus 345 pdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~v~~s-pdg~~Lat~~~d 397 (685)
++|++.++....+.|..||..+|+.+..+..+. .+++++|+ |+++.|++++..
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 999988887778889999999999999998774 59999998 898888877754
No 212
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.48 E-value=8.8e-12 Score=138.72 Aligned_cols=334 Identities=12% Similarity=0.083 Sum_probs=204.7
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeeccccc----------CeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDN----------AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR 86 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~----------~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 86 (685)
.|++++.++.|.-+|..+|+.+......... ....+++ ++..++.++.|+.|..+|..++ +.+.
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG----~~~W 152 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATG----KEVW 152 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTC----CEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCC----CEEe
Confidence 4667777899999999999998877622110 0122333 3567888888999999998877 4443
Q ss_pred ecccC-C----CCCeEEEEecCCCEEEEEeC------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCcee
Q 005656 87 FRSGH-S----APPLCIRFYANGRHILSAGQ------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 155 (685)
Q Consensus 87 ~~~~h-~----~~v~~i~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (685)
....+ . ..+.+.-...++ .++.++. +|.|+.||..+++....+....... ..+..
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~-------------~~~~~ 218 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP-------------SKPFE 218 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT-------------TSCCS
T ss_pred eecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc-------------ccccc
Confidence 33322 1 112111111234 5555543 6899999999998776653211000 00000
Q ss_pred eeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-----------
Q 005656 156 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG----------- 224 (685)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg----------- 224 (685)
... .......| ... +. .... .........++++++++.+++++.++
T Consensus 219 ~~~-~~~g~~~w----------------~~~----g~-~~~~-~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~ 275 (677)
T 1kb0_A 219 DES-MKRAARTW----------------DPS----GK-WWEA-GGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPK 275 (677)
T ss_dssp SHH-HHHHHTTS----------------CGG----GC-HHHH-CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred ccc-cccccccc----------------ccc----Cc-eeEe-CCCcccccceeEcCCCCEEEEECCCCccccCCCCCcc
Confidence 000 00000000 000 00 0000 00111223567888888888887764
Q ss_pred --------cEEEEECCCCcccccccccccccc-CCCCcCEEEEEEcCCC---CEEEEEECCCeEEEEECCCCceEEEeec
Q 005656 225 --------WIERFNLQSGISRGSYLDMSERSN-YAHNGEVVGVACDSTN---TLMISAGYHGDIKVWDFKGRDLKSRWEV 292 (685)
Q Consensus 225 --------~i~~~d~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (685)
.|..+|..+|+.+..+........ .........+....+| ..++.++.+|.++++|..+++++.....
T Consensus 276 ~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 276 GGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (677)
T ss_dssp CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence 499999999998877642110000 0001122223333466 6788899999999999999998876653
Q ss_pred CC------------ce------------------------eEEEEeecCCEEEEEeCC----------------------
Q 005656 293 GC------------SL------------------------VKIVYHRVNGLLATVADD---------------------- 314 (685)
Q Consensus 293 ~~------------~i------------------------~~~~~~~~~~~l~~~~~d---------------------- 314 (685)
.. ++ ..++++|++.++++...+
T Consensus 356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~ 435 (677)
T 1kb0_A 356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ 435 (677)
T ss_dssp SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccc
Confidence 21 01 146889998888876432
Q ss_pred ---------------------CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEE
Q 005656 315 ---------------------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 373 (685)
Q Consensus 315 ---------------------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~ 373 (685)
|.|..||+.+++.+.++. +..++....++.++.+++.++.||.+++||..+|+.+..+
T Consensus 436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence 789999999999988876 3344555667778889999999999999999999999999
Q ss_pred eeccc--eEEEEEcCCCCeEEEE
Q 005656 374 HVDVS--ITALSLSPNMDVLATA 394 (685)
Q Consensus 374 ~~~~~--v~~v~~spdg~~Lat~ 394 (685)
..... ..-+.|.++|+..++.
T Consensus 515 ~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 515 PTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEE
T ss_pred eCCCCcccCCEEEEeCCEEEEEE
Confidence 87654 3456677888755444
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.48 E-value=1.6e-11 Score=128.26 Aligned_cols=236 Identities=12% Similarity=0.038 Sum_probs=161.0
Q ss_pred CCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656 93 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 172 (685)
Q Consensus 93 ~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (685)
..+..++|+++++.+++...++.|++||..++.......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~----------------------------------------- 169 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP----------------------------------------- 169 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec-----------------------------------------
Confidence 357899999999877776677899999987654432221
Q ss_pred EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC--cEEEEECCCCccccccccccccccCC
Q 005656 173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYA 250 (685)
Q Consensus 173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~ 250 (685)
. ..... ++++++++.++++..++ .|++|+...+.....+.. ....
T Consensus 170 ---------------------------~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~----~~~~ 216 (409)
T 3hrp_A 170 ---------------------------G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ----LGST 216 (409)
T ss_dssp ---------------------------T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE----CCTT
T ss_pred ---------------------------c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee----ccch
Confidence 1 11123 89999999999988866 799999876654322200 0002
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE----eecCCc---eeEEEEeec-CCEEEEEeCCCeEEEEEc
Q 005656 251 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR----WEVGCS---LVKIVYHRV-NGLLATVADDLVIRLFDV 322 (685)
Q Consensus 251 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~---i~~~~~~~~-~~~l~~~~~dg~I~i~d~ 322 (685)
....+.+++++|++..|+.+..++.|+.||..++..... ...... ...++|+|+ +.++++-..++.|+.|+.
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~ 296 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP 296 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence 445678899999655566677788999999987764332 111111 239999995 556666667889999997
Q ss_pred CCCeeEEEEecCC---------------CCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeEEee-----------
Q 005656 323 VALRMVRKFEGHT---------------DRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHV----------- 375 (685)
Q Consensus 323 ~~~~~~~~~~~h~---------------~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~i~~~~~----------- 375 (685)
... +..+.++. .....++++|+|+++++-+ .++.|+.|++.++........
T Consensus 297 ~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~ 374 (409)
T 3hrp_A 297 DGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTP 374 (409)
T ss_dssp TCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBST
T ss_pred CCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCCh
Confidence 644 34444442 4588999999999777777 889999999888865433322
Q ss_pred ----ccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 376 ----DVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 376 ----~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
-..+..++++|+|.++++-..+ +.|+.++
T Consensus 375 ~~~~~~~P~giavd~~g~lyVad~~n-~~Ir~i~ 407 (409)
T 3hrp_A 375 LEATFNYPYDICYDGEGGYWIAEAWG-KAIRKYA 407 (409)
T ss_dssp TTCCBSSEEEEEECSSSEEEEEESTT-CEEEEEE
T ss_pred hceEeCCceEEEEcCCCCEEEEECCC-CeEEEEE
Confidence 1248999999997655555444 4787765
No 214
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.44 E-value=1.8e-10 Score=119.34 Aligned_cols=308 Identities=10% Similarity=0.048 Sum_probs=190.2
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeeccc--------ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAH--------DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 88 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h--------~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~ 88 (685)
.+++++.+|.|..+|..+++.+....... ...+.+.-. .++..++.++.++.|..+|..++ +.+...
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~~g~l~a~d~~tG----~~~W~~ 129 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-VSGGHVYIGSEKAQVYALNTSDG----TVAWQT 129 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-EETTEEEEEETTSEEEEEETTTC----CEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-EeCCEEEEEcCCCEEEEEECCCC----CEEEEE
Confidence 57777888999999999999887665221 222322222 23457777888899999988776 333322
Q ss_pred ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCc
Q 005656 89 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 168 (685)
Q Consensus 89 ~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (685)
............. +..++.++.++.|..+|..+++..........
T Consensus 130 ~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~--------------------------------- 174 (376)
T 3q7m_A 130 KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMP--------------------------------- 174 (376)
T ss_dssp ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC----------------------------------
T ss_pred eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC---------------------------------
Confidence 2222211222222 34788888899999999988876554421100
Q ss_pred ceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccccccc
Q 005656 169 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 248 (685)
Q Consensus 169 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 248 (685)
.. .......+ .+ .+..+++++.+|.+..+|..+|+....+........
T Consensus 175 -------------------------~~-~~~~~~~~----~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 175 -------------------------SL-SLRGESAP----TT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp ------------------------------CCCCCC----EE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred -------------------------ce-eecCCCCc----EE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 00 00000111 11 145788888999999999999988765532100000
Q ss_pred CCCCcCEEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe
Q 005656 249 YAHNGEVVGVACDS--TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 326 (685)
Q Consensus 249 ~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 326 (685)
.....+..+...| .+..++.++.++.+..+|..+++.+....... ...+. .++..+++++.++.+..+|..+++
T Consensus 223 -~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 223 -TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFI--VDGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp --------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEE--EETTEEEEEETTCCEEEEETTTCC
T ss_pred -cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCce--EECCEEEEEcCCCeEEEEECCCCc
Confidence 0000000000011 24567778889999999999999887765443 33333 347788888899999999999999
Q ss_pred eEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-ccceEE-EEEcCCCCeEEEEEeCCCeEEE
Q 005656 327 MVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITA-LSLSPNMDVLATAHVDQNGVYL 403 (685)
Q Consensus 327 ~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-~~~v~~-v~~spdg~~Lat~~~d~~~I~l 403 (685)
.+..... ....+..... .+..|+.++.+|.|+++|..+|+.+..+.. ...+.+ ... .+..|++++.+| .|+.
T Consensus 299 ~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G-~l~~ 373 (376)
T 3q7m_A 299 TLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDG-TVYS 373 (376)
T ss_dssp EEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTS-CEEE
T ss_pred EEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCC-EEEE
Confidence 8777652 2222333333 356788899999999999999999887776 333321 222 245677777776 7888
Q ss_pred EE
Q 005656 404 WV 405 (685)
Q Consensus 404 W~ 405 (685)
|+
T Consensus 374 ~~ 375 (376)
T 3q7m_A 374 IT 375 (376)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.44 E-value=1.1e-10 Score=118.14 Aligned_cols=187 Identities=9% Similarity=-0.046 Sum_probs=130.6
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC------CCeE
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY------HGDI 276 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~------dg~i 276 (685)
..+.+++++++|+++++. .+ .|++||..++........ ........+.+++++|+|+++++... .+.|
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~----~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL----ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS----STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC----CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence 458889999999876654 44 499999988875432110 00012346889999999997665542 2456
Q ss_pred EEEECCCCceEEEeecCCceeEEEEeecCCEEEEE-eCCCeEEEEEcC--CC-e-----eEEEEecCCCCeEEEEEcCCC
Q 005656 277 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVV--AL-R-----MVRKFEGHTDRITDFCFSEDG 347 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~--~~-~-----~~~~~~~h~~~I~~l~~spdg 347 (685)
..++ +++.............++|+|+++.++++ +.++.|.+||+. ++ + .+..+......+..++++++|
T Consensus 164 ~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G 241 (326)
T 2ghs_A 164 YHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG 241 (326)
T ss_dssp EEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred EEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC
Confidence 6666 45544333333456789999999876555 457899999986 55 3 223333344567899999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEc-CCCCeEEEEEeCC
Q 005656 348 KWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLS-PNMDVLATAHVDQ 398 (685)
Q Consensus 348 ~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~s-pdg~~Lat~~~d~ 398 (685)
++.++...++.|.+||. +++.+..+..+.. +++++|+ |+++.|++++..+
T Consensus 242 ~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 98777767788999997 6788777776654 9999998 8988887776554
No 216
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.43 E-value=3e-11 Score=134.69 Aligned_cols=334 Identities=12% Similarity=0.083 Sum_probs=202.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeeccccc----------Ce-eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDN----------AI-ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 85 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~----------~V-~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 85 (685)
.|++++.++.|..+|..+|+.+..+. .+.. .+ ..+.. .+..++.++.|+.|..+|..++. .+
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~----~~ 144 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYD-PQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQ----RA 144 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEEC-CCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC----EE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEc-CCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCC----Ee
Confidence 56777788999999999999988875 2211 01 11222 35578888889999999988773 33
Q ss_pred Eeccc--CCCCCeEEEEec---CCCEEEEEe------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 86 RFRSG--HSAPPLCIRFYA---NGRHILSAG------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 86 ~~~~~--h~~~v~~i~~~~---~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
-.... +......+..+| ++ .++.++ .+|.|..||..+++....+...... +.
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~----------------p~ 207 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGD----------------PK 207 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC----------------TT
T ss_pred eeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCC----------------cc
Confidence 22221 111111111112 44 444443 3689999999999877665321000 00
Q ss_pred eeeeccc--ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc-------
Q 005656 155 IAFDCAE--IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW------- 225 (685)
Q Consensus 155 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~------- 225 (685)
..+.... .....|.. ..|... .........++++|+++.+++++.++.
T Consensus 208 ~~~~~~~~~~~~~~~~g-----------~~w~~~------------~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~ 264 (689)
T 1yiq_A 208 LPPEGKGMEIAAKTWFG-----------DAYVEQ------------GGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWR 264 (689)
T ss_dssp SCCCSHHHHHHHTTCCS-----------STHHHH------------CEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred cccccccccccccccCC-----------ceeeec------------CCCCccccceeEcCCCCEEEEeCCCCCccccCCC
Confidence 0000000 00000000 000000 001111235678888899999988764
Q ss_pred ------------EEEEECCCCccccccccccccc-cCCCCcCEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceEEE
Q 005656 226 ------------IERFNLQSGISRGSYLDMSERS-NYAHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSR 289 (685)
Q Consensus 226 ------------i~~~d~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~ 289 (685)
|..+|..+|+.+..+....... .......+.......+|+ .++.++.+|.++++|..+++++..
T Consensus 265 ~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 265 SQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp HTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 9999999999887764211000 000112222222223454 688889999999999999998754
Q ss_pred eecCC----------------------------------------ceeEEEEeecCCEEEEEeC----------------
Q 005656 290 WEVGC----------------------------------------SLVKIVYHRVNGLLATVAD---------------- 313 (685)
Q Consensus 290 ~~~~~----------------------------------------~i~~~~~~~~~~~l~~~~~---------------- 313 (685)
..... .-..++++|+.+++++...
T Consensus 345 ~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~ 424 (689)
T 1yiq_A 345 KGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRN 424 (689)
T ss_dssp EESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCC
T ss_pred ccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccc
Confidence 32211 0112688998888877632
Q ss_pred -----------------------------CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005656 314 -----------------------------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 364 (685)
Q Consensus 314 -----------------------------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~ 364 (685)
+|.|+.||+.+++.+.++..+. ++..-.++..+.+++.++.||.|+.||.
T Consensus 425 ~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 425 PFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp SCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence 3789999999999998887554 3333456667889999999999999999
Q ss_pred CCCceeeEEeeccc--eEEEEEcCCCC-eEEEEEeCC
Q 005656 365 ILARQIDAIHVDVS--ITALSLSPNMD-VLATAHVDQ 398 (685)
Q Consensus 365 ~~~~~i~~~~~~~~--v~~v~~spdg~-~Lat~~~d~ 398 (685)
.+|+.+..+..+.. ..-+.|+.+|+ |+++.+..+
T Consensus 504 ~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~g 540 (689)
T 1yiq_A 504 DTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWG 540 (689)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred CCCccceeeeCCCCcccCceEEEECCEEEEEEEecCC
Confidence 99999999987655 34577788887 555554444
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.43 E-value=5.2e-11 Score=118.93 Aligned_cols=228 Identities=10% Similarity=0.065 Sum_probs=153.2
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCcee
Q 005656 6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 85 (685)
Q Consensus 6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 85 (685)
-+..|+|++..++++...++.|..||..+++.. .+ .+...+.+++++++|+++++. ++.|.+||.+++. .+.+
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~--~~~~ 88 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS--AVVL 88 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE--EEEE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc--EEEE
Confidence 467899966547888888899999999887653 33 345789999999999966654 5678888876541 1222
Q ss_pred Eeccc--CCCCCeEEEEecCCCEEEEEeCC---------CceEEEEeecCceeeEechhhHHHHHhhccccccccccCce
Q 005656 86 RFRSG--HSAPPLCIRFYANGRHILSAGQD---------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 154 (685)
Q Consensus 86 ~~~~~--h~~~v~~i~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (685)
..... ....+..+++.|+|+++++.... ..-.+|.+........+.
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~----------------------- 145 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF----------------------- 145 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-----------------------
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-----------------------
Confidence 22111 12346789999999866654322 223455443221111000
Q ss_pred eeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE-EecCCcEEEEEC--
Q 005656 155 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTAGGWIERFNL-- 231 (685)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~~~d~-- 231 (685)
........++|+|+++.+++ .+.++.|.+|++
T Consensus 146 ---------------------------------------------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~ 180 (297)
T 3g4e_A 146 ---------------------------------------------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL 180 (297)
T ss_dssp ---------------------------------------------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT
T ss_pred ---------------------------------------------eccccccceEEcCCCCEEEEecCCCCcEEEEeccC
Confidence 11233568999999997755 455789999987
Q ss_pred CCCccc--cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEe-ecCCE
Q 005656 232 QSGISR--GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH-RVNGL 307 (685)
Q Consensus 232 ~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~-~~~~~ 307 (685)
.++... ..+. ....+.+...+++++++|++.++...++.|..||..+++.+..+..+ ..+++++|. |+++.
T Consensus 181 ~~G~~~~~~~~~-----~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 181 QTGQISNRRSVY-----KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp TTCCEEEEEEEE-----ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCE
T ss_pred CCCcccCcEEEE-----ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCE
Confidence 455432 1111 11123456789999999987777777889999999989998888876 689999998 88887
Q ss_pred EEEEeC
Q 005656 308 LATVAD 313 (685)
Q Consensus 308 l~~~~~ 313 (685)
|++++.
T Consensus 256 L~vt~~ 261 (297)
T 3g4e_A 256 MYVTCA 261 (297)
T ss_dssp EEEEEB
T ss_pred EEEEcC
Confidence 666654
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.43 E-value=1.2e-11 Score=139.05 Aligned_cols=242 Identities=14% Similarity=0.107 Sum_probs=149.9
Q ss_pred CcEEEEEEccCCCCEEEE-Ee----CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCc--------
Q 005656 3 GAVTALAFSSDGQPLLAS-GA----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS-------- 69 (685)
Q Consensus 3 ~~V~~l~fspdg~~~lat-g~----~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~-------- 69 (685)
..|..++|||||+ +||- .+ ....|++||+.+++.+.... +.....+++|+ |++.|+.++.+..
T Consensus 129 ~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 129 TALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp CEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred EEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 4588899999999 6663 22 23579999999998654422 22224678999 9998888877743
Q ss_pred -----EEEEEecCCCCCCceeEeccc-CCCCCeEEEEecCCCEEEEEeCC----CceEEEEeecCceeeEechhhHHHHH
Q 005656 70 -----IKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKRA 139 (685)
Q Consensus 70 -----v~iWd~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~ 139 (685)
|++|++.+......++..... |......+.|+|||++|+..... +.|+++|+.++..
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~------------- 271 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA------------- 271 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-------------
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-------------
Confidence 888887765443345544444 55567889999999988654322 2455555432210
Q ss_pred hhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEE
Q 005656 140 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 219 (685)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 219 (685)
T Consensus 272 -------------------------------------------------------------------------------- 271 (693)
T 3iuj_A 272 -------------------------------------------------------------------------------- 271 (693)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-C---CCeEEEEECCCCce---EEEeec
Q 005656 220 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-Y---HGDIKVWDFKGRDL---KSRWEV 292 (685)
Q Consensus 220 g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~---dg~i~iwd~~~~~~---~~~~~~ 292 (685)
. ...+. .+....... +++++..|+..+ . .+.|..+|+.++.. .....+
T Consensus 272 ---------------~-~~~l~--------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 272 ---------------P-LLTVQ--------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp ---------------C-CEEEE--------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred ---------------c-eEEEe--------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 0 00000 122222222 344444443333 2 25788888877644 222333
Q ss_pred CCceeEEEEeecCCEEEEEeCCC---eEEEEEcCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEc
Q 005656 293 GCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMD----GSLRIWDV 364 (685)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg---~I~i~d~~~~~~~~~~~-~h~~~I~~l~~spdg~~l~s~s~D----g~I~iwd~ 364 (685)
...+. .|+++++.|+....++ .|++||+..+. .+.+. .+.+.+..+.++++++.|+....+ ++|+.||+
T Consensus 327 ~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 327 RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 33343 8899999777665543 78999988554 44443 345567788888888866655444 78999999
Q ss_pred CCCce
Q 005656 365 ILARQ 369 (685)
Q Consensus 365 ~~~~~ 369 (685)
.+++.
T Consensus 404 ~~g~~ 408 (693)
T 3iuj_A 404 KSGAI 408 (693)
T ss_dssp TTCCE
T ss_pred CCCeE
Confidence 88764
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=4.6e-11 Score=119.87 Aligned_cols=192 Identities=10% Similarity=0.024 Sum_probs=133.1
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEE----EEC------
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS----AGY------ 272 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s----~s~------ 272 (685)
..+..++++++|+.+++...++.|.+|+.. +........ ........+.+++++++|+++++ |..
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~----~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~ 160 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGR----YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGC 160 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECE----ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSC
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEec----cCCCccCCCCCEEECCCCCEEEeCcCCCcccccccc
Confidence 457889999999977666666889999986 543221110 00011234678999999998776 321
Q ss_pred -------CCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCC------CeEEEEEcCCCeeE--EEEe-cCCC
Q 005656 273 -------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD------LVIRLFDVVALRMV--RKFE-GHTD 336 (685)
Q Consensus 273 -------dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~I~i~d~~~~~~~--~~~~-~h~~ 336 (685)
.+.|..||..+++..... .......++|+|+++.|+++... +.|++|++..+... +.+. ...+
T Consensus 161 ~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 161 PADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp CCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred ccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 256888887777655443 33556789999999988777665 78999998765411 1221 1234
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
.+..++++++|++.++ +.+| |.+|+. .++.+..+..+..+.+++|+|+++.|.+++.+ .++.++
T Consensus 240 ~pdgi~~d~~G~lwv~-~~~g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~--~l~~~~ 303 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSS-SGTG-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP--CLWMLP 303 (305)
T ss_dssp CCCSEEECTTSCEEEC-CSSE-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETT--EEEEEE
T ss_pred CCCeEEECCCCCEEEe-cCCc-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC--eEEEEE
Confidence 4667899999995444 4454 999997 68888888877779999999999999888865 455443
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.39 E-value=1.2e-11 Score=126.22 Aligned_cols=264 Identities=10% Similarity=0.024 Sum_probs=170.2
Q ss_pred cCeeEEEEeCCCcEEEEec--CCCcEEEEEecCCCCCCceeE------ecccCCCCCeEEEEecCCCEEEEEeC-----C
Q 005656 47 NAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLR------FRSGHSAPPLCIRFYANGRHILSAGQ-----D 113 (685)
Q Consensus 47 ~~V~~l~~sp~~~~l~s~s--~D~~v~iWd~~~~~~~~~~~~------~~~~h~~~v~~i~~~~~~~~l~s~s~-----d 113 (685)
..+..++++|+|+++++.. .++.++||.++.+ +... ...+|-..+.++++.++|+.+++-.. +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g----~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD----GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT----EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC----CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence 6789999999999998864 2344778887622 2221 11235568899999999875555433 5
Q ss_pred CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCce
Q 005656 114 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 193 (685)
Q Consensus 114 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 193 (685)
+.|.+||+.+++....+... .
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~-----------------------------------------------------~------ 113 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLP-----------------------------------------------------P------ 113 (343)
T ss_dssp CEEEEEETTTTEEEEEEECC-----------------------------------------------------T------
T ss_pred CeEEEEECCCCeEEEEEECC-----------------------------------------------------h------
Confidence 78999998777654433210 0
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEEEe----cCCcEEEEECCCCccccccccccccccCCCCcCEE-EEEEcCCCCEEE
Q 005656 194 ILRPCPENPTAVKACTISACGNFAVLGT----AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV-GVACDSTNTLMI 268 (685)
Q Consensus 194 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~ 268 (685)
........+..+++++++..++++. .++.|.+||+.++.....+. .|..... ...+.+++..+.
T Consensus 114 ---~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~--------~~~~~~~~~~~~~~~g~~~~ 182 (343)
T 2qe8_A 114 ---PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ--------GYPGIAPEDIDLVIDGVPVQ 182 (343)
T ss_dssp ---TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT--------TCTTTSCCSCCCEETTEECB
T ss_pred ---hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec--------CCCcccccccceeECCEEEE
Confidence 0001224467889998665655543 57899999999887654432 2211100 023334666677
Q ss_pred EEECCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC-eEEEEEcCC---C-----eeEE--EEecCCCC
Q 005656 269 SAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL-VIRLFDVVA---L-----RMVR--KFEGHTDR 337 (685)
Q Consensus 269 s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~I~i~d~~~---~-----~~~~--~~~~h~~~ 337 (685)
+.+.+|.++.|. ..+..++++|+++.|+++..++ .++.++... + +... ...++.+.
T Consensus 183 ~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~ 249 (343)
T 2qe8_A 183 IGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI 249 (343)
T ss_dssp EECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS
T ss_pred eccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC
Confidence 777788776664 2357799999999888877665 565555321 1 0000 12244556
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeC
Q 005656 338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d 397 (685)
...++++++|+++++...++.|.+||..+++........ ..+++++|+++|.++++++..
T Consensus 250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred CceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 778999999999999888999999998567654443332 238999999998877776543
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=6.5e-12 Score=127.98 Aligned_cols=177 Identities=11% Similarity=0.003 Sum_probs=132.5
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccc-----cccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS-----YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 277 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~ 277 (685)
..+..+++++....+++|+.++ +.+|++++...... +.. .....+.+ |+.++| ++.+|+++ .++.|+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~---~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF---KWEKEIPD-VIFVCF--HGDQVLVS-TRNALY 109 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC---SEEEECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc---eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence 3689999999999999999986 55698765431000 110 01114556 999999 88999988 889999
Q ss_pred EEECCCCceEEEe-ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 005656 278 VWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 356 (685)
Q Consensus 278 iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~D 356 (685)
+||+.+....... .+..++.++.+.+. .+++++.||.+.+||+.++.... +...|++++|||+| ++.|..|
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 9999866543333 33456777666543 38889999999999999887653 44579999999999 7789999
Q ss_pred CcEEEEEcCCCce--eeEE------e----eccceEEEEEcCCCCeEEEEE
Q 005656 357 GSLRIWDVILARQ--IDAI------H----VDVSITALSLSPNMDVLATAH 395 (685)
Q Consensus 357 g~I~iwd~~~~~~--i~~~------~----~~~~v~~v~~spdg~~Lat~~ 395 (685)
|++++|+...+.. ...+ . +...|.++.|.+++.++++=.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999998877775 5556 2 234499999999999988744
No 222
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.38 E-value=1.3e-11 Score=125.78 Aligned_cols=133 Identities=12% Similarity=0.107 Sum_probs=109.4
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
+. |+.++| ++++++++ .+|.|++||+.+........ .|...+.++.+.+.+ +++++.||.|.+||+
T Consensus 88 p~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~--------~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl 153 (388)
T 1xip_A 88 PD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT--------SFEKPVFQLKNVNNT--LVILNSVNDLSALDL 153 (388)
T ss_dssp TT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE--------ECSSCEEEEEECSSE--EEEEETTSEEEEEET
T ss_pred CC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc--------eeecceeeEEecCCC--EEEEECCCCEEEEEc
Confidence 45 999999 99999999 88999999998876433332 566778888776543 888999999999999
Q ss_pred CCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee--EEEE------e---cCCCCeEEEEEcCCCCEE
Q 005656 282 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKF------E---GHTDRITDFCFSEDGKWL 350 (685)
Q Consensus 282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~--~~~~------~---~h~~~I~~l~~spdg~~l 350 (685)
.++.... ....+++++|+|+| +++|..||++++|+...++. .+++ . +|...|.++.|.+++.++
T Consensus 154 ~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl 228 (388)
T 1xip_A 154 RTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFL 228 (388)
T ss_dssp TTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred cCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence 9877653 34689999999999 78899999999999988876 5666 2 478889999999999998
Q ss_pred EEE
Q 005656 351 LSS 353 (685)
Q Consensus 351 ~s~ 353 (685)
++-
T Consensus 229 v~y 231 (388)
T 1xip_A 229 AVF 231 (388)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.37 E-value=3.4e-10 Score=115.30 Aligned_cols=139 Identities=16% Similarity=0.145 Sum_probs=100.5
Q ss_pred EEEEcCCCCEEEEEE-------------------CCCeEEEEECCCCceEEEeecC---CceeEEEE--eecCCEEEEEe
Q 005656 257 GVACDSTNTLMISAG-------------------YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVY--HRVNGLLATVA 312 (685)
Q Consensus 257 ~l~~~~~~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~ 312 (685)
.+-|+|+++.++++. .+.+|.+||+.+++.+.++..+ .....+.| +|+++++++++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 456677777666664 3689999999999888888875 34455655 99999888777
Q ss_pred ------CCCeEEEEEcCCCee--EEEE--ecC----------------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 005656 313 ------DDLVIRLFDVVALRM--VRKF--EGH----------------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVI 365 (685)
Q Consensus 313 ------~dg~I~i~d~~~~~~--~~~~--~~h----------------~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~ 365 (685)
.+++|.+|..+.++. ...+ ... ...+.+|.+||||++|.++. ..+.|.+||+.
T Consensus 272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 456888776655422 1111 110 24578999999999998776 46889999986
Q ss_pred C---CceeeEEeecc---------------ceEEEEEcCCCCeEEEEE
Q 005656 366 L---ARQIDAIHVDV---------------SITALSLSPNMDVLATAH 395 (685)
Q Consensus 366 ~---~~~i~~~~~~~---------------~v~~v~~spdg~~Lat~~ 395 (685)
. .+++..+...+ ....+++||||++|+++.
T Consensus 352 d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 352 NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 3 35666665541 368899999999999998
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.36 E-value=5.1e-11 Score=121.68 Aligned_cols=264 Identities=13% Similarity=0.066 Sum_probs=163.9
Q ss_pred cEEEEEEccCCCCEEEEEe--CCCcEEEEeCCCCeeeEEee------cccccCeeEEEEeCCCcEEEEecC-----CCcE
Q 005656 4 AVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIR------EAHDNAIISLHFFANEPVLMSASA-----DNSI 70 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~--~dg~I~vwd~~~~~~~~~~~------~~h~~~V~~l~~sp~~~~l~s~s~-----D~~v 70 (685)
.++.++++|+|+ ++++.. .++.++||.+.+++.. .+. .+|-..+.++++.++++++++-.. ++.|
T Consensus 18 ~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 18 APGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp CEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 578999999998 777753 2343555555456543 111 135578999999999987766543 5789
Q ss_pred EEEEecCCCCCCceeEecc------cCCCCCeEEEEecCCCEE-EEEe---CCCceEEEEeecCceeeEechhhHHHHHh
Q 005656 71 KMWIFDTTDGDPRLLRFRS------GHSAPPLCIRFYANGRHI-LSAG---QDRAFRLFSVIQDQQSRELSQRHVAKRAR 140 (685)
Q Consensus 71 ~iWd~~~~~~~~~~~~~~~------~h~~~v~~i~~~~~~~~l-~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 140 (685)
.+||+.++ +.+..+. .+...+..+++.+++..+ ++-. .++.|.+||+.+++..+.+.....
T Consensus 96 ~~~d~~tg----~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~----- 166 (343)
T 2qe8_A 96 VAWDTLNN----QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG----- 166 (343)
T ss_dssp EEEETTTT----EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT-----
T ss_pred EEEECCCC----eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc-----
Confidence 99988765 4333322 223457899999865454 4444 578899999877654433310000
Q ss_pred hccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 005656 141 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 220 (685)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 220 (685)
..... ..+.++|..+.+.
T Consensus 167 -----------------------------------------------------------~~~~~---~~~~~~g~~~~~~ 184 (343)
T 2qe8_A 167 -----------------------------------------------------------IAPED---IDLVIDGVPVQIG 184 (343)
T ss_dssp -----------------------------------------------------------TSCCS---CCCEETTEECBEE
T ss_pred -----------------------------------------------------------ccccc---cceeECCEEEEec
Confidence 00000 1223345555555
Q ss_pred ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC-eEEEEECC---CCc-----e---EE
Q 005656 221 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFK---GRD-----L---KS 288 (685)
Q Consensus 221 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-~i~iwd~~---~~~-----~---~~ 288 (685)
..+|.+..|. ..+.+++++|+++.|+++..++ .+..++.. .+. . +.
T Consensus 185 ~~~g~~~~~~----------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T 2qe8_A 185 QPDGTVIRPH----------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE 242 (343)
T ss_dssp CTTSCEECCC----------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred cCCCceecee----------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence 5555553331 2357899999998888877665 45444421 111 0 01
Q ss_pred EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656 289 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 289 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iw 362 (685)
..........++++++|.++++...++.|.+||..+++....... +...+++++|.++|+++++.+..+.+.+|
T Consensus 243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 111223456789999999999988899999999866764433332 24568999999999888887755555444
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=7.2e-10 Score=112.16 Aligned_cols=228 Identities=12% Similarity=0.063 Sum_probs=148.9
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
..+.+|+|++..+++++..++.|..||..+++... +. +...+.+++|+++|+++++. . +.|.+||..++. .+.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~--~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGV--LTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCC--EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCc--EEE
Confidence 35789999866577888788999999999886543 32 35679999999999887765 3 348888765542 122
Q ss_pred eEeccc--CCCCCeEEEEecCCCEEEEEeCC----CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 85 LRFRSG--HSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 85 ~~~~~~--h~~~v~~i~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
+..... ....+.+++++|+|+++++...+ +...+|.+.+++. ..+.
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~-~~~~--------------------------- 175 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-TKLF--------------------------- 175 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-EEEE---------------------------
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE-EEee---------------------------
Confidence 221111 12357889999999876654322 2344554432211 1110
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECC--CC-
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQ--SG- 234 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~--~~- 234 (685)
........++|+|+|+.++++ +.++.|.+|++. ++
T Consensus 176 -----------------------------------------~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl 214 (326)
T 2ghs_A 176 -----------------------------------------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL 214 (326)
T ss_dssp -----------------------------------------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred -----------------------------------------CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCC
Confidence 011235688999999877665 456899999986 55
Q ss_pred ccc--cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEe-ecCCEEEE
Q 005656 235 ISR--GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH-RVNGLLAT 310 (685)
Q Consensus 235 ~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~-~~~~~l~~ 310 (685)
... ..+. ..........+++++++|.+.++...++.|..||. +++....+..+ ..+.+++|. ++++.|++
T Consensus 215 ~~~~~~~~~-----~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~v 288 (326)
T 2ghs_A 215 PTGKAEVFI-----DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV 288 (326)
T ss_dssp BSSCCEEEE-----ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred cccCceEEE-----ECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEE
Confidence 321 1111 01123456788999999987777766789999998 56666666655 468999998 88886665
Q ss_pred EeCC
Q 005656 311 VADD 314 (685)
Q Consensus 311 ~~~d 314 (685)
++..
T Consensus 289 t~~~ 292 (326)
T 2ghs_A 289 TSAR 292 (326)
T ss_dssp EEBC
T ss_pred EecC
Confidence 5543
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.35 E-value=1.1e-10 Score=117.14 Aligned_cols=229 Identities=11% Similarity=0.025 Sum_probs=148.7
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCc
Q 005656 4 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 4 ~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~ 83 (685)
......|+|+|+.+++++..++.|..|+. +++. ..+. .+...+.+++++++|+++++...++.|.+|+.+ + ...
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~-~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g--~~~ 119 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLL-DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G--QAH 119 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEE-ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S--CEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEe-CCCCccceeeECCCCCEEEEECCCCEEEEECCC-C--CEE
Confidence 35678999999867788888899999998 4443 3443 456778999999999987777667888888764 2 112
Q ss_pred eeEe-ccc-CCCCCeEEEEecCCCEEEE----EeC-------------CCceEEEEeecCceeeEechhhHHHHHhhccc
Q 005656 84 LLRF-RSG-HSAPPLCIRFYANGRHILS----AGQ-------------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKM 144 (685)
Q Consensus 84 ~~~~-~~~-h~~~v~~i~~~~~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 144 (685)
.+.. ..+ ....+..+++.++|+..++ +.. .+.|..||..+++....
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~--------------- 184 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM--------------- 184 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE---------------
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE---------------
Confidence 2211 111 1245778999999987776 221 12233333222211000
Q ss_pred cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-
Q 005656 145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG- 223 (685)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d- 223 (685)
. .......++|+|+|+.++++...
T Consensus 185 -------------------------------------------------~------~~~~p~gl~~spdg~~lyv~~~~~ 209 (305)
T 3dr2_A 185 -------------------------------------------------A------DLDHPNGLAFSPDEQTLYVSQTPE 209 (305)
T ss_dssp -------------------------------------------------E------EESSEEEEEECTTSSEEEEEECCC
T ss_pred -------------------------------------------------e------cCCCCcceEEcCCCCEEEEEecCC
Confidence 0 01235678999999988887765
Q ss_pred -----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCceeE
Q 005656 224 -----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK 298 (685)
Q Consensus 224 -----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i~~ 298 (685)
+.|++|++..+.. ..... ......+...+++++++|++.+ ++.+ .|.+|+. .++.+..+..+..+.+
T Consensus 210 ~~~~~~~i~~~~~~~~~l-~~~~~----~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~~~~~~~ 281 (305)
T 3dr2_A 210 QGHGSVEITAFAWRDGAL-HDRRH----FASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPTPGTASN 281 (305)
T ss_dssp ---CCCEEEEEEEETTEE-EEEEE----EECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEEECSSCCCE
T ss_pred cCCCCCEEEEEEecCCCc-cCCeE----EEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEEECCCceeE
Confidence 7899999876541 11000 0001234456789999998444 4444 5999998 5667777777667899
Q ss_pred EEEeecCCEEEEEeCCCe
Q 005656 299 IVYHRVNGLLATVADDLV 316 (685)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~ 316 (685)
++|.++++.|++++.++.
T Consensus 282 ~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 282 CTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EEECTTSCEEEEEETTEE
T ss_pred EEEeCCCCEEEEEcCCeE
Confidence 999999988888887643
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.35 E-value=3.1e-11 Score=122.51 Aligned_cols=296 Identities=8% Similarity=0.037 Sum_probs=186.5
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656 7 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR 86 (685)
Q Consensus 7 ~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 86 (685)
++.+..+|. +.+|+.++.|..|| .+++...... .+...+.++...+++. |..++.+ +..+|. .+ +.+.
T Consensus 24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g----~~~~ 91 (330)
T 3hxj_A 24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFFK-SGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DG----TEKW 91 (330)
T ss_dssp CCEECTTSC--EECSSTTTTTEEEC-TTSCEEESSC-GGGEEEECCEETTTTE-ECCSSCE--EEEECC-CG----GGGG
T ss_pred CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEEe-cCCCcccceEEecCCc-EEEecCc--EEEECC-CC----cEEE
Confidence 344555665 66677788899999 8888766655 4455567777777775 4444444 666653 22 2222
Q ss_pred ecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccC
Q 005656 87 FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 166 (685)
Q Consensus 87 ~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (685)
.............+. +..+..++.++.|..+|.. ++......
T Consensus 92 ~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~----------------------------------- 133 (330)
T 3hxj_A 92 RFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK----------------------------------- 133 (330)
T ss_dssp GSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE-----------------------------------
T ss_pred EEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc-----------------------------------
Confidence 222222222333333 4467778888888888875 44322221
Q ss_pred CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccccc
Q 005656 167 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER 246 (685)
Q Consensus 167 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~ 246 (685)
.....+.++...++|. +++|+.++.|..||.. +.....+.
T Consensus 134 ---------------------------------~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~----- 173 (330)
T 3hxj_A 134 ---------------------------------TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK----- 173 (330)
T ss_dssp ---------------------------------CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-----
T ss_pred ---------------------------------CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-----
Confidence 0111233445555665 6778888999999998 76655443
Q ss_pred ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656 247 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 325 (685)
Q Consensus 247 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~ 325 (685)
.....+.++..++++..++ ++ +.|..+| .+++........ ..+.++...++|. +.+++.++.+..+|. ++
T Consensus 174 ---~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g 244 (330)
T 3hxj_A 174 ---TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DG 244 (330)
T ss_dssp ---CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TS
T ss_pred ---cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CC
Confidence 2234566677777777544 44 8899999 777666655543 5577777777765 555677788888874 56
Q ss_pred eeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEcCCCCeEEEEEeCCCeEEEE
Q 005656 326 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW 404 (685)
Q Consensus 326 ~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~~~I~lW 404 (685)
+.+..+......+..+.+.+++. |..++.+|.|..+|. +++.+..+..... +.++..+++|.+ ..++.+| .+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G-~~~~~ 320 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNG-KFYAL 320 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTS-CEEEE
T ss_pred CEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCC-eEEEE
Confidence 66666665555556667766664 666777888999995 7887777665444 777888788874 4466565 77776
Q ss_pred E
Q 005656 405 V 405 (685)
Q Consensus 405 ~ 405 (685)
.
T Consensus 321 ~ 321 (330)
T 3hxj_A 321 F 321 (330)
T ss_dssp E
T ss_pred e
Confidence 4
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=8.3e-11 Score=132.09 Aligned_cols=192 Identities=8% Similarity=0.043 Sum_probs=128.2
Q ss_pred EEEEccCCCEEEEEecCC-------------cEEEEECCCCccccccccccccccCC-CCcCEEEEEEcCCCCEEEEEEC
Q 005656 207 ACTISACGNFAVLGTAGG-------------WIERFNLQSGISRGSYLDMSERSNYA-HNGEVVGVACDSTNTLMISAGY 272 (685)
Q Consensus 207 ~~~~s~~g~~l~~g~~dg-------------~i~~~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~ 272 (685)
.++|+ ||+.|+.++.+. .|++|++.++........ .... |...+.++.|+|+|++|+....
T Consensus 179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~----~~~~~~~~~~~~~~~SpDg~~l~~~~~ 253 (693)
T 3iuj_A 179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF----GAIPAQHHRYVGATVTEDDRFLLISAA 253 (693)
T ss_dssp CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEE----SCSGGGCCSEEEEEECTTSCEEEEEEE
T ss_pred cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEE----ecCCCCCeEEEEEEEcCCCCEEEEEEc
Confidence 56789 999888887764 399999987754322110 1113 4456789999999998765442
Q ss_pred ----CCeEEEEECCCC--ceEEEeecCCceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCee--EEEEecCCCCeEE
Q 005656 273 ----HGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRM--VRKFEGHTDRITD 340 (685)
Q Consensus 273 ----dg~i~iwd~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~--~~~~~~h~~~I~~ 340 (685)
+..|+++|+.++ ............... ++++|+.|+..+. .+.|..+|+.++.. .+.+..|...+.
T Consensus 254 ~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~- 331 (693)
T 3iuj_A 254 NSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL- 331 (693)
T ss_dssp SSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-
T ss_pred cCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-
Confidence 248999999876 333333333333333 6777775555443 36899999988754 355666776665
Q ss_pred EEEcCCCCEEEEEeCCC---cEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeC---CCeEEEEEcC
Q 005656 341 FCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVD---QNGVYLWVNR 407 (685)
Q Consensus 341 l~~spdg~~l~s~s~Dg---~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d---~~~I~lW~~~ 407 (685)
.|++++++|+....++ .|++|++..+ ....+..+ ..+..+.++|+++.|+....+ -..|+.|+..
T Consensus 332 -~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 332 -TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp -EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred -EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 8999999888776443 6899998744 44555443 347888899999888777655 1378888753
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.33 E-value=2.6e-11 Score=127.86 Aligned_cols=271 Identities=10% Similarity=0.073 Sum_probs=176.4
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEE-e-CCCcEEEEec------------------CCCcEE
Q 005656 12 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF-F-ANEPVLMSAS------------------ADNSIK 71 (685)
Q Consensus 12 pdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~-s-p~~~~l~s~s------------------~D~~v~ 71 (685)
+||++++++...++.|.+.|+.+.++...+..........+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4888555555567789999999999888655334456889998 5 9999998884 245788
Q ss_pred EEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCce-EEEEeecCceeeEechhhHHHHHhhccccccccc
Q 005656 72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF-RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK 150 (685)
Q Consensus 72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i-~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (685)
+.|.++. +......--. ....++++|+|+++++++.+..- ...+..+....
T Consensus 179 vID~~t~----~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~----------------------- 230 (595)
T 1fwx_A 179 AVDADKW----EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM----------------------- 230 (595)
T ss_dssp EEETTTT----EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE-----------------------
T ss_pred EEECCCC----eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccccc-----------------------
Confidence 8888765 5554443222 46778999999999998876421 00000000000
Q ss_pred cCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 005656 151 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN 230 (685)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d 230 (685)
..+.+.+..... .+.++|++... +.|.+.|
T Consensus 231 ---------------------------d~v~V~~~~~~~-------------------~~v~~Gk~~~i----~~V~VID 260 (595)
T 1fwx_A 231 ---------------------------DHIVVFNIAEIE-------------------KAIAAGDYQEL----NGVKVVD 260 (595)
T ss_dssp ---------------------------EEEEEEEHHHHH-------------------HHHHHTCSEEE----TTEEEEE
T ss_pred ---------------------------ceEEEeecccee-------------------EeccCCCeeEE----CcEEEEe
Confidence 000111100000 01122333332 4599999
Q ss_pred CCC--Ccc-ccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCc------------eEEEeecCC
Q 005656 231 LQS--GIS-RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRD------------LKSRWEVGC 294 (685)
Q Consensus 231 ~~~--~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~------------~~~~~~~~~ 294 (685)
..+ +.. ...+. -.....++.++|||+++++++ .+.+|.++|+.+.+ .......+.
T Consensus 261 ~~~~~~~~~~~~Ip---------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~ 331 (595)
T 1fwx_A 261 GRKEASSLFTRYIP---------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL 331 (595)
T ss_dssp CSGGGCCSSEEEEE---------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred CcccCCceeEEEEe---------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence 987 433 22221 123456899999999887766 67899999999653 456666678
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCC----------CeeEEEEecCCCCe-----EEEEEcCCCCEEEEEeC---C
Q 005656 295 SLVKIVYHRVNGLLATVADDLVIRLFDVVA----------LRMVRKFEGHTDRI-----TDFCFSEDGKWLLSSGM---D 356 (685)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~----------~~~~~~~~~h~~~I-----~~l~~spdg~~l~s~s~---D 356 (685)
....++|+|+|....+..-|+.|.+||+.+ .+.+.++..|-.+- .++.++|||+||+++.. |
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD 411 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence 899999999995555666799999999987 56788887765432 22356899999998853 4
Q ss_pred Cc----------EEEEEcCCCce
Q 005656 357 GS----------LRIWDVILARQ 369 (685)
Q Consensus 357 g~----------I~iwd~~~~~~ 369 (685)
+. -.++|+..+++
T Consensus 412 r~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 412 RFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp SSCCCCSSCCEEEEEEECSSSSC
T ss_pred ccccCCCCCCCcceEEEcCCCcE
Confidence 42 18899965553
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.33 E-value=3.4e-10 Score=126.25 Aligned_cols=146 Identities=9% Similarity=0.035 Sum_probs=102.7
Q ss_pred cCCC---EEEEEecCCcEEEEECCCCcccccccccccc------------------c--cCCCCc-----------CEEE
Q 005656 212 ACGN---FAVLGTAGGWIERFNLQSGISRGSYLDMSER------------------S--NYAHNG-----------EVVG 257 (685)
Q Consensus 212 ~~g~---~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~------------------~--~~~h~~-----------~v~~ 257 (685)
.+|+ .+++++.+|.++++|..+|+.+......... . ...... .-..
T Consensus 314 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~ 393 (689)
T 1yiq_A 314 IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQP 393 (689)
T ss_dssp ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSC
T ss_pred cCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCc
Confidence 3565 7889999999999999999876332110000 0 000000 1123
Q ss_pred EEEcCCCCEEEEEEC---------------------------------------------CCeEEEEECCCCceEEEeec
Q 005656 258 VACDSTNTLMISAGY---------------------------------------------HGDIKVWDFKGRDLKSRWEV 292 (685)
Q Consensus 258 l~~~~~~~~l~s~s~---------------------------------------------dg~i~iwd~~~~~~~~~~~~ 292 (685)
++++|+..++++... +|.|+.||+.+++.+..+..
T Consensus 394 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~ 473 (689)
T 1yiq_A 394 MSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY 473 (689)
T ss_dssp CEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE
T ss_pred ceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC
Confidence 788888887776532 37899999999999999888
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCC-eEEEEEcCCCC-EEEEEeCCC
Q 005656 293 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGK-WLLSSGMDG 357 (685)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~spdg~-~l~s~s~Dg 357 (685)
+.+.....+...+.++++|+.|+.++.||.++|+.+.+++...+. .+-+.|+.||+ |+++.+..|
T Consensus 474 ~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~g 540 (689)
T 1yiq_A 474 VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWG 540 (689)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEecCC
Confidence 766665677778999999999999999999999999998754332 24467788887 455444433
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=9.3e-10 Score=122.41 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=104.5
Q ss_pred EEEccCC---CEEEEEecCCcEEEEECCCCccccccccccccc---cCCCCcC------------------------EEE
Q 005656 208 CTISACG---NFAVLGTAGGWIERFNLQSGISRGSYLDMSERS---NYAHNGE------------------------VVG 257 (685)
Q Consensus 208 ~~~s~~g---~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~---~~~h~~~------------------------v~~ 257 (685)
+....+| ..+++++.+|.++++|..+|+.+..+......- ....... -..
T Consensus 318 ~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~ 397 (677)
T 1kb0_A 318 ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHP 397 (677)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSC
T ss_pred EecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCC
Confidence 3444577 688999999999999999998876543111000 0000000 025
Q ss_pred EEEcCCCCEEEEEECC-------------------------------------------CeEEEEECCCCceEEEeecCC
Q 005656 258 VACDSTNTLMISAGYH-------------------------------------------GDIKVWDFKGRDLKSRWEVGC 294 (685)
Q Consensus 258 l~~~~~~~~l~s~s~d-------------------------------------------g~i~iwd~~~~~~~~~~~~~~ 294 (685)
++++|++.++++...+ |.|..||+.+++.+..+....
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~ 477 (677)
T 1kb0_A 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS 477 (677)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS
T ss_pred ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC
Confidence 7889988888775432 789999999999999988877
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-CCeEEEEEcCCCCEEEE
Q 005656 295 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLS 352 (685)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~I~~l~~spdg~~l~s 352 (685)
+.....+...+.++++++.||.+++||..+++.+.++.... ...+-+.|+++|+.+++
T Consensus 478 ~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 478 PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 66677778889999999999999999999999999997433 23344567788874443
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.27 E-value=7.6e-11 Score=119.88 Aligned_cols=262 Identities=8% Similarity=-0.059 Sum_probs=169.6
Q ss_pred EEEEecCCC----cEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe----------CCCceEEEEeecCc
Q 005656 60 VLMSASADN----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG----------QDRAFRLFSVIQDQ 125 (685)
Q Consensus 60 ~l~s~s~D~----~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s----------~dg~i~vwd~~~~~ 125 (685)
..++...++ +|.+.|.++. +.+..+.....+ .+.++||+++++++. .++.|.+||+.+.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~----~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCG----VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTT----EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred EEEECCccCCccceEEEEECCCC----eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 455555555 7778887776 666665544455 799999999999886 36889999999988
Q ss_pred eeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCe
Q 005656 126 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 205 (685)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 205 (685)
....+..+.. ... ......
T Consensus 108 vv~~I~v~~~--------------------------------------------------------~~~-----~~g~~P 126 (368)
T 1mda_H 108 PIADIELPDA--------------------------------------------------------PRF-----SVGPRV 126 (368)
T ss_dssp EEEEEEETTS--------------------------------------------------------CSC-----CBSCCT
T ss_pred EEEEEECCCc--------------------------------------------------------ccc-----ccCCCc
Confidence 7776632100 000 001234
Q ss_pred EEEEEccCCCEEEEEec--CCcEEE--EECCCCccccccccccccccCCCCcCEEEEEEcCCC-CEEEEEECCCeEEEEE
Q 005656 206 KACTISACGNFAVLGTA--GGWIER--FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWD 280 (685)
Q Consensus 206 ~~~~~s~~g~~l~~g~~--dg~i~~--~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd 280 (685)
..++++|+|++++++.. +..+.+ +|+.+ ...+.. +.. +.+.|++ +.+++.+.||.+.+.|
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-------~~~-----~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-------ASC-----FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-------SSC-----CCCEEEETTEEECCCCTTSCEEEE
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-------CCc-----eEEccCCCeEEEEEcCCCCEEEEE
Confidence 57899999999999875 457888 88877 222210 110 1122333 3445556778887788
Q ss_pred CCC-----CceEE----EeecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC--eeEEEEec-------CC---CCe
Q 005656 281 FKG-----RDLKS----RWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--RMVRKFEG-------HT---DRI 338 (685)
Q Consensus 281 ~~~-----~~~~~----~~~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~-------h~---~~I 338 (685)
+.+ ++... .+..+ .+. . .+++..++..+. +.+.+.|..+. +.+..+.- +. ...
T Consensus 192 ~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 266 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp CCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred CccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcc
Confidence 776 33321 11112 233 3 666776666666 99999998754 23332221 00 111
Q ss_pred EEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEe-CCCeEEEEEcCC
Q 005656 339 TDFCFSEDGKWLLSSGM---------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV-DQNGVYLWVNRC 408 (685)
Q Consensus 339 ~~l~~spdg~~l~s~s~---------Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~-d~~~I~lW~~~~ 408 (685)
..++++||++.++.+.. ++.+.++|+.+++.+..+........++|+|||++++++.. ..+.|.++|...
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 22689999998876533 23566999999999999988888999999999997666665 345999999643
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.24 E-value=1.4e-13 Score=142.08 Aligned_cols=261 Identities=11% Similarity=0.023 Sum_probs=145.4
Q ss_pred CCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHH
Q 005656 57 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 136 (685)
Q Consensus 57 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 136 (685)
++..+++++.|+.|..||..++ +.+..... .++.+..+..++..+++++.||.|+.||..+++...........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG----~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG----SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC----CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCC----CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 4678999999999999998877 44444433 45655556677878888889999999999887764443211000
Q ss_pred HHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCE
Q 005656 137 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 216 (685)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 216 (685)
. ....++ + ..+..
T Consensus 82 ~--------------------------------------------------------------~~~sp~----~-~~~~~ 94 (369)
T 2hz6_A 82 L--------------------------------------------------------------VQASPC----R-SSDGI 94 (369)
T ss_dssp H--------------------------------------------------------------HTTCSC----C------
T ss_pred c--------------------------------------------------------------cccCce----E-ecCCE
Confidence 0 000000 0 12456
Q ss_pred EEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCce
Q 005656 217 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 296 (685)
Q Consensus 217 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i 296 (685)
+++|+.+|.++.||..+|+....+. .+. ...++|++..+++++.|+.|+.||..+++.+..+.... .
T Consensus 95 v~~g~~dg~v~a~D~~tG~~~w~~~--------~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~ 161 (369)
T 2hz6_A 95 LYMGKKQDIWYVIDLLTGEKQQTLS--------SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-Y 161 (369)
T ss_dssp CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-E
T ss_pred EEEEeCCCEEEEEECCCCcEEEEec--------CCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-c
Confidence 7778889999999999998877653 221 13345678889999999999999999998776654321 1
Q ss_pred eEEEEeecC---CEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeE-EEEEcCCCCEEEE--EeCCCcEEEEEcCCCc--
Q 005656 297 VKIVYHRVN---GLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT-DFCFSEDGKWLLS--SGMDGSLRIWDVILAR-- 368 (685)
Q Consensus 297 ~~~~~~~~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~-~l~~spdg~~l~s--~s~Dg~I~iwd~~~~~-- 368 (685)
...++..+. ..+++++.||.|+.||..+++.+..+.. ..++. ...++++|...+. ...++.++.+|..+|+
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~ 240 (369)
T 2hz6_A 162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVG 240 (369)
T ss_dssp CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHH
T ss_pred cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeecccceeeeehhcCCcc
Confidence 222333332 5677888999999999999998888773 34443 3455667753211 1114567777777776
Q ss_pred --eeeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 369 --QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 369 --~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.+..+.....+.+ ..-.+..|++++.+| .++.++..
T Consensus 241 ~~~~W~~~~~~~~~s--p~~~~g~lyv~~~~G-~l~al~~~ 278 (369)
T 2hz6_A 241 RITKWKYPFPKETEA--KSKLTPTLYVGKYST-SLYASPSM 278 (369)
T ss_dssp HHHTSCCCCCCHHHH--HHHSEEEECBEECSS-CEECCEEE
T ss_pred cceeeeeccCccccc--cccccceEEEecccC-CEEecCcc
Confidence 5444443332210 001345677777776 78877643
No 234
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.23 E-value=9.2e-08 Score=109.25 Aligned_cols=324 Identities=9% Similarity=0.076 Sum_probs=205.0
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
|.++...++|. +.+ |+.++.|..||..+++........+...|.++...+++.+.+.. .++-+..|+.... +.
T Consensus 175 i~~i~~d~~g~-lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt-~~~Gl~~~~~~~~----~~ 247 (795)
T 4a2l_A 175 IASTLYRQGDQ-IYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT-EGAGLFLINPKTK----EI 247 (795)
T ss_dssp CEEEEEEETTE-EEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE-BSSCEEEEETTTT----EE
T ss_pred eEEEEECCCCC-EEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE-CCCCeEEEeCCCC----eE
Confidence 78888888887 444 56554599999887765443222345678999988888766544 3334777876543 22
Q ss_pred eEeccc-------CCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 85 LRFRSG-------HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 85 ~~~~~~-------h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
...... ....|.++...++|... .|+.+ -|.+|+..++.........
T Consensus 248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~------------------------ 301 (795)
T 4a2l_A 248 KNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNP------------------------ 301 (795)
T ss_dssp EEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCT------------------------
T ss_pred EEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCC------------------------
Confidence 222111 23568888888777644 45555 5888886554322111000
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 237 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~ 237 (685)
..........|.++...++|+ +.+|+.++-|..|+..++...
T Consensus 302 -------------------------------------~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~ 343 (795)
T 4a2l_A 302 -------------------------------------VENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK 343 (795)
T ss_dssp -------------------------------------TSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE
T ss_pred -------------------------------------CCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce
Confidence 000002245689999998887 566777777999987665432
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee---------cCCceeEEEEeecCCEE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---------VGCSLVKIVYHRVNGLL 308 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l 308 (685)
..... .. ...-....|.++..+++|. |..|+.++-|..||..++....... ....|.++...+++++|
T Consensus 344 ~~~~~-~~-~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~l 420 (795)
T 4a2l_A 344 NIRNI-PY-KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLV 420 (795)
T ss_dssp EECCC-TT-SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEE
T ss_pred EEcCC-CC-CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEE
Confidence 21110 00 0011345799999998887 5557777789999988776543321 12568888888888867
Q ss_pred EEEeCCCeEEEEEcCCCeeEEEEe----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-------cc
Q 005656 309 ATVADDLVIRLFDVVALRMVRKFE----GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-------DV 377 (685)
Q Consensus 309 ~~~~~dg~I~i~d~~~~~~~~~~~----~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-------~~ 377 (685)
.+|+.++-|..||..+++...... .+...|.++...++|++.+.. .+ -|.+||..+++....... ..
T Consensus 421 Wigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (795)
T 4a2l_A 421 YIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSK 498 (795)
T ss_dssp EEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred EEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCc
Confidence 778887889999998876433221 134579999999888855544 34 488999887654332211 23
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 378 SITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 378 ~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.|.++...++|.+.+.+. + +|+.|+..
T Consensus 499 ~i~~i~~d~~g~lWigt~--~-Gl~~~~~~ 525 (795)
T 4a2l_A 499 QITTLFRDSHKRLWIGGE--E-GLSVFKQE 525 (795)
T ss_dssp CEEEEEECTTCCEEEEES--S-CEEEEEEE
T ss_pred eEEEEEECCCCCEEEEeC--C-ceEEEeCC
Confidence 489999999998766654 3 68888753
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.21 E-value=1.5e-09 Score=114.59 Aligned_cols=281 Identities=13% Similarity=0.086 Sum_probs=184.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEee---------------------cc-----------c------ccCeeEEEEeC-
Q 005656 16 PLLASGASSGVISIWNLEKRRLQSVIR---------------------EA-----------H------DNAIISLHFFA- 56 (685)
Q Consensus 16 ~~latg~~dg~I~vwd~~~~~~~~~~~---------------------~~-----------h------~~~V~~l~~sp- 56 (685)
+.+.+|+..|.++|+-+.+++.+..+. .+ + .+.......|.
T Consensus 16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t 95 (595)
T 1fwx_A 16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT 95 (595)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE
T ss_pred EEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC
Confidence 356688999999999999988777654 10 1 12233455665
Q ss_pred ----CCcEEEEecC-CCcEEEEEecCCCCCCceeEecc-cCCCCCeEEEE-e-cCCCEEEEEeCC---------------
Q 005656 57 ----NEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRF-Y-ANGRHILSAGQD--------------- 113 (685)
Q Consensus 57 ----~~~~l~s~s~-D~~v~iWd~~~~~~~~~~~~~~~-~h~~~v~~i~~-~-~~~~~l~s~s~d--------------- 113 (685)
||++++.+.. ++.|.+-|+++. ++...+. .....+..+++ . |++++++.++..
T Consensus 96 ~g~~DG~~lfVnd~~~~rVavIdl~t~----~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 96 EGKYDGRFLFMNDKANTRVARVRCDVM----KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 171 (595)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTT----EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred CCCcCCCEEEEEcCCCCEEEEEECCCc----eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence 7887766655 556888888876 5444221 22345788888 4 899999888632
Q ss_pred ---CceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCcccc
Q 005656 114 ---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 190 (685)
Q Consensus 114 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 190 (685)
+.+.++|..+.+....+.
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~----------------------------------------------------------- 192 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVL----------------------------------------------------------- 192 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEE-----------------------------------------------------------
T ss_pred ccCceEEEEECCCCeEEEEEE-----------------------------------------------------------
Confidence 234444443332222221
Q ss_pred CceeecCCCCCCCCeEEEEEccCCCEEEEEecCC---------------cEEEEECCCCccccccccccccccCCCCcCE
Q 005656 191 GEHILRPCPENPTAVKACTISACGNFAVLGTAGG---------------WIERFNLQSGISRGSYLDMSERSNYAHNGEV 255 (685)
Q Consensus 191 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---------------~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v 255 (685)
. ......++++|+|+++++.+.+. .|.++|......
T Consensus 193 -----V-----gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~------------------- 243 (595)
T 1fwx_A 193 -----V-----SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK------------------- 243 (595)
T ss_dssp -----E-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH-------------------
T ss_pred -----e-----CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE-------------------
Confidence 1 11234577999999999988664 234443222111
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCC--Cce-EEEeecCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCe-----
Q 005656 256 VGVACDSTNTLMISAGYHGDIKVWDFKG--RDL-KSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALR----- 326 (685)
Q Consensus 256 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~--~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~----- 326 (685)
+.++|++... +.|.+.|..+ ++. ...+..+....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 244 ----~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 244 ----AIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp ----HHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS
T ss_pred ----eccCCCeeEE----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc
Confidence 1223443332 5599999998 555 67777777888999999999776665 57899999999763
Q ss_pred -------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----------CceeeEEeeccceE------EEE
Q 005656 327 -------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL----------ARQIDAIHVDVSIT------ALS 383 (685)
Q Consensus 327 -------~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~----------~~~i~~~~~~~~v~------~v~ 383 (685)
.+.... -......++|+|||...++.-.|++|.+||+.+ ...+..+..+..+- .+.
T Consensus 316 ~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t 394 (595)
T 1fwx_A 316 NADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGET 394 (595)
T ss_dssp CCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTS
T ss_pred ccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceE
Confidence 344443 234578899999994444566899999999987 56677777665542 224
Q ss_pred EcCCCCeEEEEEeC
Q 005656 384 LSPNMDVLATAHVD 397 (685)
Q Consensus 384 ~spdg~~Lat~~~d 397 (685)
++|||++|+++..-
T Consensus 395 ~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 395 LDATNDWLVCLSKF 408 (595)
T ss_dssp TTCCSSEEEEEESC
T ss_pred eCCCCCEEEEcCCC
Confidence 58999999999653
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.17 E-value=1.4e-08 Score=105.08 Aligned_cols=263 Identities=11% Similarity=0.023 Sum_probs=165.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC-
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP- 95 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v- 95 (685)
.+++++.+|.|..+|..+++...... ............ +..++.++.++.|..+|..++ +.+..........
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG----~~~W~~~~~~~~~~ 177 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTVAWQTK-VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADG----AVKWTVNLDMPSLS 177 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTC----CEEEEEECCC----
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEe-CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCC----cEEEEEeCCCCcee
Confidence 57778889999999999999887765 222222222222 347777888999999988766 3332222211110
Q ss_pred ----eEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceE
Q 005656 96 ----LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 171 (685)
Q Consensus 96 ----~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (685)
...... +..++.++.++.+..+|..+++..............
T Consensus 178 ~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~-------------------------------- 223 (376)
T 3q7m_A 178 LRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGST-------------------------------- 223 (376)
T ss_dssp -CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-------------------------------------
T ss_pred ecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCc--------------------------------
Confidence 111222 346788888999999999888765444211000000
Q ss_pred EEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCC
Q 005656 172 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 251 (685)
Q Consensus 172 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h 251 (685)
.+ ... ......++ + .+..+++++.+|.+..+|..+|+......
T Consensus 224 ---------~~---------~~~---~~~~~~p~----~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---------- 266 (376)
T 3q7m_A 224 ---------EI---------DRL---SDVDTTPV----V--VNGVVFALAYNGNLTALDLRSGQIMWKRE---------- 266 (376)
T ss_dssp ---------------------------CCCCCCE----E--ETTEEEEECTTSCEEEEETTTCCEEEEEC----------
T ss_pred ---------cc---------ccc---cccCCCcE----E--ECCEEEEEecCcEEEEEECCCCcEEeecc----------
Confidence 00 000 00001111 1 25678888889999999999998776542
Q ss_pred CcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-C-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE
Q 005656 252 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-G-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 329 (685)
Q Consensus 252 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~ 329 (685)
......+... +..++.++.++.|..+|..+++.+..... . ........ .+..|++++.+|.++++|..+++.+.
T Consensus 267 ~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 267 LGSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp CCCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 1223444443 56788888899999999999998877652 2 22222222 36788899999999999999999988
Q ss_pred EEecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEE
Q 005656 330 KFEGHTDRITD-FCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 330 ~~~~h~~~I~~-l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
.+......+.. ... .+..|+.++.+|.|+.|+
T Consensus 343 ~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 343 QQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 87754443332 222 245788889999999987
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=9.9e-12 Score=128.07 Aligned_cols=167 Identities=7% Similarity=-0.069 Sum_probs=91.3
Q ss_pred ccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe
Q 005656 211 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW 290 (685)
Q Consensus 211 s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (685)
..++..+++++.+|.|+.||..+|+....+....... ....++ +. .+..+++++.|+.|+.||..+|+.+..+
T Consensus 46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~--~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL--VQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp ----CCEEECTTTCCEEEC-----CCSEECSCCHHHH--HTTCSC----C------CCCCEEEEEEEEECCC--------
T ss_pred EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc--cccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence 3556677778899999999999987755442100000 001111 11 2446777888999999999999988777
Q ss_pred ecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCC
Q 005656 291 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG---KWLLSSGMDGSLRIWDVILA 367 (685)
Q Consensus 291 ~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg---~~l~s~s~Dg~I~iwd~~~~ 367 (685)
..+.. ..++|++..+++++.|+.|+.||..+++.+..+..+. ....+++++. ..+++++.||.|+.||..+|
T Consensus 119 ~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 119 SSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred cCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 65542 3456788899999999999999999998766654221 1223344432 45777889999999999999
Q ss_pred ceeeEEeeccceE-EEEEcCCCC
Q 005656 368 RQIDAIHVDVSIT-ALSLSPNMD 389 (685)
Q Consensus 368 ~~i~~~~~~~~v~-~v~~spdg~ 389 (685)
+.+..+....++. ...++++|.
T Consensus 194 ~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 194 DVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp CEEEEEECSSCEEEEEECTTSSC
T ss_pred cEEEEecCCCceEEEEEecCCce
Confidence 9988887777744 445666664
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.17 E-value=1.2e-08 Score=97.81 Aligned_cols=193 Identities=7% Similarity=-0.044 Sum_probs=143.9
Q ss_pred CeEEEEEccCCCEEEEEec---CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005656 204 AVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVW 279 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw 279 (685)
....+.+++++ .+++++. ++.|.++|+.+++....+.. +......+++++ +..++.+. .++.+.++
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-------~~~~fgeGi~~~--g~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM-------DDSYFGEGLTLL--NEKLYQVVWLKNIGFIY 91 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC-------CTTCCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec-------CCCcceEEEEEe--CCEEEEEEecCCEEEEE
Confidence 46789999986 5555543 57999999999998877531 112223356665 44555444 67899999
Q ss_pred ECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEe
Q 005656 280 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 280 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~spdg~~l~s~s 354 (685)
|..+.+.+.++..+ .-....++++|+.++++..++.|.++|..+.+.++.+.-.. ..++.+.|. +|+..+...
T Consensus 92 D~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~ 169 (266)
T 2iwa_A 92 DRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW 169 (266)
T ss_dssp ETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred ECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence 99999999988765 12234567788877777788999999999999888876321 247788888 776555555
Q ss_pred CCCcEEEEEcCCCceeeEEeec--------------cceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 355 MDGSLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 355 ~Dg~I~iwd~~~~~~i~~~~~~--------------~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
.++.|.+.|..+++.+..+... .....++|+|+++.|++++...+.|+.-+...
T Consensus 170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 6789999999999999999764 13689999999998888887767888876543
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=1e-08 Score=114.02 Aligned_cols=335 Identities=10% Similarity=0.060 Sum_probs=195.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeeccccc---------Ce-eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeE
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDN---------AI-ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR 86 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~---------~V-~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 86 (685)
.|++++.++.|.-+|..+|+.+......... .+ ..+++ .+..++.++.|+.|..+|..++. .+-
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~----~~W 141 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK----AIW 141 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC----EEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC----Eee
Confidence 5667777899999999999998877521110 00 12233 24577788889999999888773 332
Q ss_pred ecccC-C---CCCeEEEEecCCCEEEEEeC------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceee
Q 005656 87 FRSGH-S---APPLCIRFYANGRHILSAGQ------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 156 (685)
Q Consensus 87 ~~~~h-~---~~v~~i~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (685)
..... . ..+.+.-...++ .++.+.. +|.|..+|..+++....+....... ........+ .
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p--------~~~~~~~~~-~ 211 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDP--------ALPYEHPEL-R 211 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT--------TSCCSSHHH-H
T ss_pred eeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCC--------Ccccccccc-c
Confidence 22211 0 111110001134 4555443 5899999999998876653210000 000000000 0
Q ss_pred eecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC------------
Q 005656 157 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG------------ 224 (685)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg------------ 224 (685)
. ....|.. -.+|.. .........+++.+.++.+++++.++
T Consensus 212 ~-----~~~~~~g----------~~~w~~-------------~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~ 263 (668)
T 1kv9_A 212 E-----AAKTWQG----------DQYWKL-------------GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGG 263 (668)
T ss_dssp H-----HHTTCCS----------SCHHHH-------------CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTC
T ss_pred c-----ccccCCc----------cceeee-------------CCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCC
Confidence 0 0000000 000000 00111223567888888888888776
Q ss_pred -------cEEEEECCCCcccccccccccccc-CCCCcCEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceEEEeecC
Q 005656 225 -------WIERFNLQSGISRGSYLDMSERSN-YAHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSRWEVG 293 (685)
Q Consensus 225 -------~i~~~d~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (685)
.|..+|..+|+.+..+........ .....+.....+..+|+ .++.++.+|.++++|..+|+++......
T Consensus 264 gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~ 343 (668)
T 1kv9_A 264 GDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFG 343 (668)
T ss_dssp CCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred CCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccc
Confidence 399999999998877642110000 00112333233333554 6888899999999999999987443221
Q ss_pred C-------------ce------------------------eEEEEeecCCEEEEEe------------------------
Q 005656 294 C-------------SL------------------------VKIVYHRVNGLLATVA------------------------ 312 (685)
Q Consensus 294 ~-------------~i------------------------~~~~~~~~~~~l~~~~------------------------ 312 (685)
. ++ ..++++|+..++++..
T Consensus 344 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~ 423 (668)
T 1kv9_A 344 KVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAA 423 (668)
T ss_dssp CCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSS
T ss_pred ccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCc
Confidence 1 00 1267888877666521
Q ss_pred ------------CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccce-
Q 005656 313 ------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSI- 379 (685)
Q Consensus 313 ------------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v- 379 (685)
.+|.|..||+.+++.+.+...+. ++....+...+.+++.++.||.|+.||..+|+.+..+.....+
T Consensus 424 ~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~ 502 (668)
T 1kv9_A 424 GFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIV 502 (668)
T ss_dssp CGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcc
Confidence 23789999999999988776433 3333445557788999999999999999999999998876542
Q ss_pred -EEEEEcCCCC-eEEEEEe
Q 005656 380 -TALSLSPNMD-VLATAHV 396 (685)
Q Consensus 380 -~~v~~spdg~-~Lat~~~ 396 (685)
.-+.+..+|+ |+++++.
T Consensus 503 ~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 503 AAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp SCCEEEEETTEEEEEEEEC
T ss_pred cCceEEEECCEEEEEEEec
Confidence 3344556776 6666654
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.15 E-value=1.2e-07 Score=92.71 Aligned_cols=248 Identities=13% Similarity=0.056 Sum_probs=153.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeee-----EEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEeccc
Q 005656 17 LLASGASSGVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSG 90 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~-----~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~ 90 (685)
+|..+. .+.|+.+++...... ..+. .....+.+++|++++. +.++...++.|..++.+... .......
T Consensus 3 ~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~----~~~~~~~ 76 (267)
T 1npe_A 3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----PTTIIRQ 76 (267)
T ss_dssp EEEEEE-EEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----CEEEECT
T ss_pred EEEEEc-CCeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC----cEEEEEC
Confidence 344444 357999998765431 1222 2234678999999655 55555567889999876542 1222222
Q ss_pred CCCCCeEEEEecCCCEEEEEe-CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcc
Q 005656 91 HSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 169 (685)
Q Consensus 91 h~~~v~~i~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (685)
....+..+++.+++..|+.+. ..+.|.+++...... ..+.
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~-------------------------------------- 117 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLF-------------------------------------- 117 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE--------------------------------------
T ss_pred CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEE--------------------------------------
Confidence 234678999999766555554 456787777643211 1100
Q ss_pred eEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec---CCcEEEEECCCCcccccccccccc
Q 005656 170 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSER 246 (685)
Q Consensus 170 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---dg~i~~~d~~~~~~~~~~~~~~~~ 246 (685)
. ........++++|++..++++.. .+.|..+++.... ...+..
T Consensus 118 --------------------------~---~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~---- 163 (267)
T 1npe_A 118 --------------------------D---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQ---- 163 (267)
T ss_dssp --------------------------C---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEEC----
T ss_pred --------------------------E---CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEE----
Confidence 0 11234678999997776666654 4688888876432 222110
Q ss_pred ccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCC
Q 005656 247 SNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVA 324 (685)
Q Consensus 247 ~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~ 324 (685)
..-....++++++++..|+.+. ..+.|..+|..+...............++.. +..++++ ..++.|.++|..+
T Consensus 164 ---~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 164 ---DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp ---TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred ---CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCC
Confidence 1224578999999877665554 5689999999865544443333334556553 4545444 4568999999999
Q ss_pred CeeEEEEecCC-CCeEEEEEcCCCC
Q 005656 325 LRMVRKFEGHT-DRITDFCFSEDGK 348 (685)
Q Consensus 325 ~~~~~~~~~h~-~~I~~l~~spdg~ 348 (685)
++.+..+.... .....+++.|++.
T Consensus 239 g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 239 SKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCceEEEccccccccceeeecCccC
Confidence 99988886433 3477888888864
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.14 E-value=4.8e-07 Score=103.34 Aligned_cols=324 Identities=10% Similarity=0.103 Sum_probs=204.9
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec------ccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~ 76 (685)
..|.++...++|. +. .|+.++-|.+||..+++....... -....|.++...++|.+.+.. .+ -|.+|+..
T Consensus 215 ~~i~~i~~d~~g~-lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~ 290 (795)
T 4a2l_A 215 KQIQAILQQSPTR-IW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHEG 290 (795)
T ss_dssp CCEEEEEEEETTE-EE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEETT
T ss_pred CeeEEEEEcCCCC-EE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcCC
Confidence 4588888888887 44 444444499999888765543321 113569999999888765544 34 57888765
Q ss_pred CCCCCCceeEecc-------cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccc
Q 005656 77 TTDGDPRLLRFRS-------GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 149 (685)
Q Consensus 77 ~~~~~~~~~~~~~-------~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (685)
.. ....... -....|.++...++|. |..|+.++-|..|+..+..... +...
T Consensus 291 ~~----~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~---------------- 348 (795)
T 4a2l_A 291 TD----SFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNI---------------- 348 (795)
T ss_dssp TT----EEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCC----------------
T ss_pred CC----eEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCC----------------
Confidence 43 2222211 1235688888888875 5567777778888765443211 1000
Q ss_pred ccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 005656 150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 229 (685)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~ 229 (685)
. .........|.+++..++|+ +.+|+.++-|..|
T Consensus 349 -------------------------------------~--------~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~ 382 (795)
T 4a2l_A 349 -------------------------------------P--------YKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLY 382 (795)
T ss_dssp -------------------------------------T--------TSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEE
T ss_pred -------------------------------------C--------CCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEE
Confidence 0 00001245688999888876 5668888779999
Q ss_pred ECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-----cCCceeEEEEeec
Q 005656 230 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-----VGCSLVKIVYHRV 304 (685)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~ 304 (685)
+..++...............-....|.++..+++++.|..|+.++.|..||..+++...... ....|.++...++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE 462 (795)
T ss_dssp CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence 98877543322100000000124679999999888856777777889999998876544321 1356888888887
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeEEEEec------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe----
Q 005656 305 NGLLATVADDLVIRLFDVVALRMVRKFEG------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH---- 374 (685)
Q Consensus 305 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~~------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~---- 374 (685)
|.+.+. +. +.+.+||..+++....... +...|.++...++|++.+... . -|..||..+++. .+.
T Consensus 463 g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~ 536 (795)
T 4a2l_A 463 GNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKASILP 536 (795)
T ss_dssp SCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EECCCSC
T ss_pred CCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCC
Confidence 775544 44 4588999888765432211 235799999999998666544 4 588899877665 232
Q ss_pred ----eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 375 ----VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 375 ----~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
....|.++..+++|.+.+++. + +|+.|+..
T Consensus 537 ~~~l~~~~i~~i~~d~~g~lWigT~--~-Gl~~~d~~ 570 (795)
T 4a2l_A 537 VSNVTKLFTNCIYEASNGIIWVGTR--E-GFYCFNEK 570 (795)
T ss_dssp SCGGGGSCEEEEEECTTSCEEEEES--S-CEEEEETT
T ss_pred CCCCCCCeeEEEEECCCCCEEEEeC--C-CceeECCC
Confidence 122389999999998666553 3 68888754
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.14 E-value=9.3e-09 Score=104.79 Aligned_cols=230 Identities=11% Similarity=0.089 Sum_probs=149.7
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCC----eeeEEee------cccccCeeEEEEeCCCcEEEEecCC------CcEEEEEe
Q 005656 12 SDGQPLLASGASSGVISIWNLEKR----RLQSVIR------EAHDNAIISLHFFANEPVLMSASAD------NSIKMWIF 75 (685)
Q Consensus 12 pdg~~~latg~~dg~I~vwd~~~~----~~~~~~~------~~h~~~V~~l~~sp~~~~l~s~s~D------~~v~iWd~ 75 (685)
+++++++++|..++.|.|+|+.+. +...++. ..-...-..+..+|+| +++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 888867777888999999999765 6666662 0011245677889999 77776655 78989887
Q ss_pred cCCCCCCceeEecccCC---CCCeEEEEecCCCEEEEEe-------------------CCCceEEEEeecCceeeEechh
Q 005656 76 DTTDGDPRLLRFRSGHS---APPLCIRFYANGRHILSAG-------------------QDRAFRLFSVIQDQQSRELSQR 133 (685)
Q Consensus 76 ~~~~~~~~~~~~~~~h~---~~v~~i~~~~~~~~l~s~s-------------------~dg~i~vwd~~~~~~~~~~~~~ 133 (685)
.+. +++....... .-...+.|+|+++.+++.. .+.+|.+||+.+++....+..+
T Consensus 172 ~T~----~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 172 YSF----EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp TTC----CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred CCC----eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 766 5555554221 2234588899999888874 3678889988776544443210
Q ss_pred hHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEE--c
Q 005656 134 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI--S 211 (685)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~--s 211 (685)
........+.| +
T Consensus 248 ------------------------------------------------------------------~~g~~P~~i~f~~~ 261 (462)
T 2ece_A 248 ------------------------------------------------------------------EENRMALELRPLHD 261 (462)
T ss_dssp ------------------------------------------------------------------TTEEEEEEEEECSS
T ss_pred ------------------------------------------------------------------CCCCccceeEeeEC
Confidence 01122344444 9
Q ss_pred cCCCEEEEEec------CCcEEEEECCCCccccccc-ccccccc-----------CCCCcCEEEEEEcCCCCEEEEEE-C
Q 005656 212 ACGNFAVLGTA------GGWIERFNLQSGISRGSYL-DMSERSN-----------YAHNGEVVGVACDSTNTLMISAG-Y 272 (685)
Q Consensus 212 ~~g~~l~~g~~------dg~i~~~d~~~~~~~~~~~-~~~~~~~-----------~~h~~~v~~l~~~~~~~~l~s~s-~ 272 (685)
|+|+++++++. ++.|.+|....+....... ....... .+-......|.++++|++|.++. .
T Consensus 262 Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg 341 (462)
T 2ece_A 262 PTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG 341 (462)
T ss_dssp TTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT
T ss_pred CCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC
Confidence 99999988885 5678776654432211100 0000000 00024578899999999988777 4
Q ss_pred CCeEEEEECCC---CceEEEeecCC---------------ceeEEEEeecCCEEEEEe
Q 005656 273 HGDIKVWDFKG---RDLKSRWEVGC---------------SLVKIVYHRVNGLLATVA 312 (685)
Q Consensus 273 dg~i~iwd~~~---~~~~~~~~~~~---------------~i~~~~~~~~~~~l~~~~ 312 (685)
.+.|.+||+.. .+++..+..++ ....+.++|+|++|+++.
T Consensus 342 ~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 342 IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 68999999862 35555555542 358899999999999887
No 243
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.11 E-value=1.5e-08 Score=110.30 Aligned_cols=333 Identities=11% Similarity=0.031 Sum_probs=188.2
Q ss_pred EEEEEeC-CCcEEEEeC-CCCeeeEEeecccccCe----------eEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 17 LLASGAS-SGVISIWNL-EKRRLQSVIREAHDNAI----------ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 17 ~latg~~-dg~I~vwd~-~~~~~~~~~~~~h~~~V----------~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
.+++++. ++.|.-+|. .+|+.+..........+ ..++. .+..++.++.|+.+..+|..++. .
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~----~ 137 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGK----I 137 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC----E
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCC----E
Confidence 4566666 899999999 89998877652211110 12233 24577777889999999887763 3
Q ss_pred eEec--ccCC--CCCeE-EEEecCCCEEEEEeC------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 85 LRFR--SGHS--APPLC-IRFYANGRHILSAGQ------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 85 ~~~~--~~h~--~~v~~-i~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
+-.. ..+. ..+.+ ... .++ .++.++. +|.|..+|..+++....+......... ...|
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~----------~~~p 205 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV----------RLAK 205 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH----------TBCT
T ss_pred EEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc----------ccCc
Confidence 3221 1110 01211 111 144 5555554 789999999999887766432111000 0000
Q ss_pred eeeeecc-----cccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC-----
Q 005656 154 VIAFDCA-----EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----- 223 (685)
Q Consensus 154 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----- 223 (685)
....... ......|. .. .... ........+++.+....+++++.+
T Consensus 206 ~~~~~~~~~G~~~~g~~~w~----------------~~-------~~~~--gg~~~w~~~a~d~~~g~vy~~~g~~~~~~ 260 (571)
T 2ad6_A 206 DFNSANPHYGQFGLGTKTWE----------------GD-------AWKI--GGGTNWGWYAYDPKLNLFYYGSGNPAPWN 260 (571)
T ss_dssp TTTTTCGGGCCSSHHHHTSS----------------TT-------GGGG--CCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred ccccccccccccccccccCc----------------cc-------ceec--CCCCeeeeEEEcCCCCeEEEECCCCcccc
Confidence 0000000 00000000 00 0000 011111234556666667666642
Q ss_pred -----------CcEEEEECCCCccccccccccccc--cCCCCcCEEEEEEcCCCC---EEEEEECCCeEEEEECCCCceE
Q 005656 224 -----------GWIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLK 287 (685)
Q Consensus 224 -----------g~i~~~d~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~ 287 (685)
+.|..+|..+|+.+..+....... ......++. +....+|+ .++.++.+|.++++|..+++.+
T Consensus 261 ~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 261 ETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp GGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence 359999999998877664211000 001112222 22224563 5677888999999999999988
Q ss_pred EEeecCC--------------ce--------------------------eEEEEeecCCEEEEEe---------------
Q 005656 288 SRWEVGC--------------SL--------------------------VKIVYHRVNGLLATVA--------------- 312 (685)
Q Consensus 288 ~~~~~~~--------------~i--------------------------~~~~~~~~~~~l~~~~--------------- 312 (685)
....... ++ ..++++|++.++++.+
T Consensus 340 w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 419 (571)
T 2ad6_A 340 VAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYR 419 (571)
T ss_dssp EEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred eeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccc
Confidence 7665432 11 2357888888777654
Q ss_pred ----------------------CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 313 ----------------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 313 ----------------------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
.++.|..||..+++.+.++... ..+....+...+..++.++.||.|+.||..+|+.+
T Consensus 420 ~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 420 AGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp TTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 3478999999999988877633 22333233335667888999999999999999999
Q ss_pred eEEeeccce--EEEEEcCCCCeEEEE
Q 005656 371 DAIHVDVSI--TALSLSPNMDVLATA 394 (685)
Q Consensus 371 ~~~~~~~~v--~~v~~spdg~~Lat~ 394 (685)
..+.....+ ..+.+..+|+.++.+
T Consensus 499 w~~~~~~~~~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 499 WNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp EEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EEEeCCCCcEeeeEEEEECCEEEEEE
Confidence 998866543 223345666644443
No 244
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.09 E-value=7.1e-08 Score=104.77 Aligned_cols=342 Identities=10% Similarity=0.025 Sum_probs=191.0
Q ss_pred EEEEEeC-CCcEEEEeC-CCCeeeEEeeccccc----------CeeEEEEeCCCcE----EEEecCCCcEEEEEecCCCC
Q 005656 17 LLASGAS-SGVISIWNL-EKRRLQSVIREAHDN----------AIISLHFFANEPV----LMSASADNSIKMWIFDTTDG 80 (685)
Q Consensus 17 ~latg~~-dg~I~vwd~-~~~~~~~~~~~~h~~----------~V~~l~~sp~~~~----l~s~s~D~~v~iWd~~~~~~ 80 (685)
.|++++. ++.|.-+|. .+|+.+-........ ....++++|.+.. ++.++.|+.+..+|..++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~- 142 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE- 142 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC-
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC-
Confidence 4666676 899999999 899988777522111 0123556543434 7778889999888877763
Q ss_pred CCceeEecc--cC--CCCCeE-EEEecCCCEEEEEe------CCCceEEEEeecCceeeEechhhHHHHHhhcccccccc
Q 005656 81 DPRLLRFRS--GH--SAPPLC-IRFYANGRHILSAG------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 149 (685)
Q Consensus 81 ~~~~~~~~~--~h--~~~v~~-i~~~~~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (685)
.+-... .+ ...+.+ -.. .++ .++.++ .+|.|+.+|..+++..-.+......... .+. ....
T Consensus 143 ---~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~-~~~--p~~~ 214 (599)
T 1w6s_A 143 ---TVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL-LLA--SDFN 214 (599)
T ss_dssp ---EEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH-TBC--TTTT
T ss_pred ---EEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc-ccc--cccc
Confidence 322211 11 011111 111 144 455554 3799999999999887666432211000 000 0000
Q ss_pred ccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-----
Q 005656 150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG----- 224 (685)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg----- 224 (685)
...+... ........| .-. .... .....-..+++.+....+++++.++
T Consensus 215 ~~~~~~g--~~~~g~~tw----------------~g~-------~~~~--gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 215 IKNPHYG--QKGLGTGTW----------------EGD-------AWKI--GGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp TTCGGGC--CTTHHHHTS----------------STT-------GGGG--CCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ccccccc--ccccccccC----------------CCc-------ceec--CCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 0000000 000000000 000 0000 1111112446667777888877653
Q ss_pred -----------cEEEEECCCCccccccccccccc--cCCCCcCEEEEEEc-CCC---CEEEEEECCCeEEEEECCCCceE
Q 005656 225 -----------WIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVACD-STN---TLMISAGYHGDIKVWDFKGRDLK 287 (685)
Q Consensus 225 -----------~i~~~d~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~-~~~---~~l~s~s~dg~i~iwd~~~~~~~ 287 (685)
.|..+|..+|+.+..+....... ......++. +... .+| ..++.++.+|.++++|..+++++
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 79999999999887764211000 001112222 2222 456 46777889999999999999988
Q ss_pred EEeecCC--------------ce--------------------------eEEEEeecCCEEEEEe---------------
Q 005656 288 SRWEVGC--------------SL--------------------------VKIVYHRVNGLLATVA--------------- 312 (685)
Q Consensus 288 ~~~~~~~--------------~i--------------------------~~~~~~~~~~~l~~~~--------------- 312 (685)
....... ++ ..++++|+.+++++..
T Consensus 347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~ 426 (599)
T 1w6s_A 347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK 426 (599)
T ss_dssp EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence 7654321 11 2356777766655431
Q ss_pred ------------------------CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 005656 313 ------------------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 368 (685)
Q Consensus 313 ------------------------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 368 (685)
..|.+..||+.+++.+-+.... .++..-.....+..++.++.||.++.||..+|+
T Consensus 427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 3478999999999988777522 222211122356778889999999999999999
Q ss_pred eeeEEeeccc--eEEEEEcCCCC-eEEEEEe
Q 005656 369 QIDAIHVDVS--ITALSLSPNMD-VLATAHV 396 (685)
Q Consensus 369 ~i~~~~~~~~--v~~v~~spdg~-~Lat~~~ 396 (685)
.+..++.... ..-+.+..+|+ |+++...
T Consensus 506 ~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 506 LLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 9998886654 23355667776 4554443
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=3.8e-09 Score=106.88 Aligned_cols=262 Identities=14% Similarity=0.088 Sum_probs=162.9
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCce
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
+.++...++|. +..|+.+ |..+|. +++....+. ..........+. +..+..++.++.+..+|.. + +.
T Consensus 62 ~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~~~-~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g----~~ 128 (330)
T 3hxj_A 62 ECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWRFD-TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G----TE 128 (330)
T ss_dssp EECCEETTTTE--ECCSSCE--EEEECC-CGGGGGGSC-C-----CCEEEE--TTEEEEECTTSEEEEECTT-S----CE
T ss_pred ccceEEecCCc--EEEecCc--EEEECC-CCcEEEEEE-CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C----CE
Confidence 46677777775 4445544 888886 555444433 222223333343 4466777778888888765 3 33
Q ss_pred eEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 164 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (685)
......+...+.++...+++. ++.++.++.|..+|.. ++......
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~--------------------------------- 173 (330)
T 3hxj_A 129 KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK--------------------------------- 173 (330)
T ss_dssp EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE---------------------------------
T ss_pred EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe---------------------------------
Confidence 333334445566677776765 6667778889988876 44332221
Q ss_pred cCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccccc
Q 005656 165 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 244 (685)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~ 244 (685)
.....+.++.+.++|. +.+++ +.|..|| .++.....+.
T Consensus 174 -----------------------------------~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~--- 211 (330)
T 3hxj_A 174 -----------------------------------TNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFY--- 211 (330)
T ss_dssp -----------------------------------CSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEEC---
T ss_pred -----------------------------------cCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEc---
Confidence 0112234455666666 45555 7899999 6766554442
Q ss_pred ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCCc-eeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 005656 245 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS-LVKIVYHRVNGLLATVADDLVIRLFDVV 323 (685)
Q Consensus 245 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~I~i~d~~ 323 (685)
.....+.++..++++. +..++.++.+..+|. ++.....+..... +..+.+.++ ..|.+++.+|.|..+|.
T Consensus 212 -----~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-g~l~v~t~~ggl~~~d~- 282 (330)
T 3hxj_A 212 -----AGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNT-DTIYFGSYDGHLYAINP- 282 (330)
T ss_dssp -----CSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTT-SCEEEECTTCEEEEECT-
T ss_pred -----cCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCC-CeEEEecCCCCEEEECC-
Confidence 2335577888888775 555677888888874 5555555554422 334444444 46777888889999996
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 324 ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 324 ~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
+++.+..+......+.++...++|+ |..++.+|.+++.....
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 283 DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 6777777776666778888888886 55688899999887654
No 246
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.08 E-value=1.2e-07 Score=103.18 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=127.1
Q ss_pred EEEEccCCCEEEEEec--------------------C----CcEEEEECCCCccccccccccccc--cCCCCcCEEEEEE
Q 005656 207 ACTISACGNFAVLGTA--------------------G----GWIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVAC 260 (685)
Q Consensus 207 ~~~~s~~g~~l~~g~~--------------------d----g~i~~~d~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~ 260 (685)
.+++.|....+++++. + +.|..+|..+|+.+..+....... ......++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4677788888887763 2 589999999999887764211000 000112222 222
Q ss_pred c-CCCC---EEEEEECCCeEEEEECCCCceEEEeecCCce----------------------------------------
Q 005656 261 D-STNT---LMISAGYHGDIKVWDFKGRDLKSRWEVGCSL---------------------------------------- 296 (685)
Q Consensus 261 ~-~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~i---------------------------------------- 296 (685)
. .+|+ .++.++.+|.++++|..+++++........+
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 4564 6788899999999999999988765543200
Q ss_pred ------eEEEEeecCCEEEEEe---------------------------------CCCeEEEEEcCCCeeEEEEecCCCC
Q 005656 297 ------VKIVYHRVNGLLATVA---------------------------------DDLVIRLFDVVALRMVRKFEGHTDR 337 (685)
Q Consensus 297 ------~~~~~~~~~~~l~~~~---------------------------------~dg~I~i~d~~~~~~~~~~~~h~~~ 337 (685)
..++++|+..++++.. .+|.|..||+.+++.+-+...+. +
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~ 487 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-P 487 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-C
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-C
Confidence 1245666655555432 25789999999999887776432 2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEeeccceE--EEEEcCCCC-eEEEEEeCCCeEEEE
Q 005656 338 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSIT--ALSLSPNMD-VLATAHVDQNGVYLW 404 (685)
Q Consensus 338 I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~--~v~~spdg~-~Lat~~~d~~~I~lW 404 (685)
+..-.....+..++.++.||.++.||..+|+.+..++....+. -+.|..+|+ |+++.+.-++.+-+|
T Consensus 488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLW 557 (582)
T ss_dssp CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHH
T ss_pred CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEccCCCccccc
Confidence 2221222246688889999999999999999999998876643 367777887 555554433333334
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.03 E-value=4e-07 Score=88.87 Aligned_cols=176 Identities=11% Similarity=0.080 Sum_probs=116.3
Q ss_pred CCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---CCeEEE
Q 005656 203 TAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKV 278 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~i 278 (685)
.....+++++++..++++ ...+.|.++++.......... .......+++++|++..++.+.. .+.|..
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~ 150 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD--------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE--------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence 457889999976666555 456789999987543221111 11245689999997666655553 368888
Q ss_pred EECCCCceEEEeec-CCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-C
Q 005656 279 WDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-M 355 (685)
Q Consensus 279 wd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~ 355 (685)
+++........... -.....++++++++.|+++ ...+.|.++|.........+.+ ......++.. +..|+.+. .
T Consensus 151 ~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~ 227 (267)
T 1npe_A 151 SHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWK 227 (267)
T ss_dssp EETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETT
T ss_pred EecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECC
Confidence 88865432222212 2457889999987766555 4567999999986554444443 3345677764 45555554 5
Q ss_pred CCcEEEEEcCCCceeeEEeecc--ceEEEEEcCCCC
Q 005656 356 DGSLRIWDVILARQIDAIHVDV--SITALSLSPNMD 389 (685)
Q Consensus 356 Dg~I~iwd~~~~~~i~~~~~~~--~v~~v~~spdg~ 389 (685)
.+.|.++|..+++.+..+.... ....+++.|++.
T Consensus 228 ~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 228 TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 6899999999999988887543 377888888764
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.98 E-value=7.8e-08 Score=90.94 Aligned_cols=182 Identities=12% Similarity=0.090 Sum_probs=132.9
Q ss_pred CCeEEEEEccCCCEEEEEecCC--cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005656 203 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVW 279 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw 279 (685)
.....+.|+ ++....+.+.+| .|+++|+.+++......- .....--+++.. +..++... .++.+.+|
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-------~~~~FgeGit~~--g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-------GKRYFGEGISDW--KDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-------CTTCCEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-------CCccceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence 335788888 565555555555 899999999998877631 111122334443 44555554 58899999
Q ss_pred ECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEe
Q 005656 280 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 280 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~spdg~~l~s~s 354 (685)
|..+.+.+.++.... ....++++++.|+.+..++.|.++|..+.+.++++.-.. ..++.+.|. +|+..+..-
T Consensus 113 D~~t~~~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 113 NIRNLRQVRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp ETTTCCEEEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred ECccCcEEEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 999999999988764 223444678877777778899999999999888876421 345678887 776555555
Q ss_pred CCCcEEEEEcCCCceeeEEeec-------------cceEEEEEcCCCCeEEEEEeC
Q 005656 355 MDGSLRIWDVILARQIDAIHVD-------------VSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 355 ~Dg~I~iwd~~~~~~i~~~~~~-------------~~v~~v~~spdg~~Lat~~~d 397 (685)
.+..|.+.|..+|+.+..+... ...+.++|+|+++.|++++..
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 6889999999999999998753 126899999999999888765
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.94 E-value=6.4e-08 Score=107.53 Aligned_cols=193 Identities=10% Similarity=0.121 Sum_probs=131.9
Q ss_pred CCEEEEEec------CCcEEEEECCCCccccccccccccccC-----------------------CCCcCEEEEEEcCCC
Q 005656 214 GNFAVLGTA------GGWIERFNLQSGISRGSYLDMSERSNY-----------------------AHNGEVVGVACDSTN 264 (685)
Q Consensus 214 g~~l~~g~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~-----------------------~h~~~v~~l~~~~~~ 264 (685)
+..++++.. +|.|+.||..+|+.+..+......... .+......+++++.+
T Consensus 162 ~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~ 241 (668)
T 1kv9_A 162 KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL 241 (668)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT
T ss_pred CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC
Confidence 345566554 488999999999987766421100000 011112347888888
Q ss_pred CEEEEEECCC-------------------eEEEEECCCCceEEEeecC----------CceeEEEEeecCC---EEEEEe
Q 005656 265 TLMISAGYHG-------------------DIKVWDFKGRDLKSRWEVG----------CSLVKIVYHRVNG---LLATVA 312 (685)
Q Consensus 265 ~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~~~----------~~i~~~~~~~~~~---~l~~~~ 312 (685)
..++.++.++ .|..+|..+++.+..+... .+.....+..+|+ .+++++
T Consensus 242 ~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~ 321 (668)
T 1kv9_A 242 DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP 321 (668)
T ss_dssp TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC
T ss_pred CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC
Confidence 8888887766 3999999999998887642 2333333445665 788999
Q ss_pred CCCeEEEEEcCCCeeEEEEecCC-----------C-Ce------------------------EEEEEcCCCCEEEEEe--
Q 005656 313 DDLVIRLFDVVALRMVRKFEGHT-----------D-RI------------------------TDFCFSEDGKWLLSSG-- 354 (685)
Q Consensus 313 ~dg~I~i~d~~~~~~~~~~~~h~-----------~-~I------------------------~~l~~spdg~~l~s~s-- 354 (685)
.+|.++++|..+|+.+....-.. + ++ ..++++|+...++...
T Consensus 322 ~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~ 401 (668)
T 1kv9_A 322 KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQE 401 (668)
T ss_dssp TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccc
Confidence 99999999999999885443211 0 00 1267888776655421
Q ss_pred ----------------------------------CCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeCCCe
Q 005656 355 ----------------------------------MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 400 (685)
Q Consensus 355 ----------------------------------~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~ 400 (685)
.+|.|..||..+|+.+-.+....+.....+...+.++++++.|+ .
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg-~ 480 (668)
T 1kv9_A 402 VPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAG-Q 480 (668)
T ss_dssp CCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTS-E
T ss_pred cceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcc-c
Confidence 24789999999999998887776665556666788899998776 9
Q ss_pred EEEEEcC
Q 005656 401 VYLWVNR 407 (685)
Q Consensus 401 I~lW~~~ 407 (685)
|+.|+.+
T Consensus 481 l~a~d~~ 487 (668)
T 1kv9_A 481 MHAYSAD 487 (668)
T ss_dssp EEEEETT
T ss_pred chhhhhh
Confidence 9999854
No 250
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=5.2e-06 Score=94.50 Aligned_cols=325 Identities=13% Similarity=0.118 Sum_probs=196.7
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec------ccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~ 76 (685)
..|.++...++|. +. .|+.+ -+.+||..+++....... .....|.++...++|.+.+ |+..+-|.+++..
T Consensus 211 ~~i~~i~~d~~g~-lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTNGN-IW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTTCC-EE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETT
T ss_pred CceeEEEEcCCCC-EE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCC
Confidence 4588999988887 44 34445 589999887765433220 1245699999988886554 4444567778765
Q ss_pred CCCCCCceeEe------------cccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccc
Q 005656 77 TTDGDPRLLRF------------RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM 144 (685)
Q Consensus 77 ~~~~~~~~~~~------------~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 144 (685)
...- ..... ..-....|.++...++|. |..|+.++-|..++........ +...
T Consensus 287 ~~~~--~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~----------- 351 (781)
T 3v9f_A 287 QNQF--LLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYS----------- 351 (781)
T ss_dssp CC-----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC-------------
T ss_pred CCee--eeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccC-----------
Confidence 4321 11110 012345688888877775 5667767778888765433211 1000
Q ss_pred cccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 005656 145 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 224 (685)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 224 (685)
... ..........|.+++..++|+ +.+|+.++
T Consensus 352 ------------------------------------------~~~-----~~~~~l~~~~v~~i~~d~~g~-lWigt~~~ 383 (781)
T 3v9f_A 352 ------------------------------------------PTQ-----MNESSLSNKVVSSVCDDGQGK-LWIGTDGG 383 (781)
T ss_dssp --------------------------------------------C-----CCSSCCSSSCEEEEEECTTSC-EEEEEBSS
T ss_pred ------------------------------------------ccc-----cccCCCCCcceEEEEEcCCCC-EEEEeCCC
Confidence 000 000001235688888888776 56777777
Q ss_pred cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee---cCCceeEEEE
Q 005656 225 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---VGCSLVKIVY 301 (685)
Q Consensus 225 ~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~i~~~~~ 301 (685)
-|..|+..++....... ........|.++..++++.+ ..|+.++.+..+|..+++...... ....|.++..
T Consensus 384 Gl~~~~~~~~~~~~~~~-----~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 457 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKE-----NRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYE 457 (781)
T ss_dssp CEEEEETTEEEEECC----------CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEE
T ss_pred cEEEEECCCCeEEEccC-----CCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEE
Confidence 79999987654332110 00134467999999888774 446777789999988776543321 1356788887
Q ss_pred eecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-
Q 005656 302 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-----TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV- 375 (685)
Q Consensus 302 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-----~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~- 375 (685)
.+++. |.+|+. +-+..||..+++........ ...|.++...++|++.+.....| |..||..+++.. .+..
T Consensus 458 d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~ 533 (781)
T 3v9f_A 458 DKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQY 533 (781)
T ss_dssp CTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTT
T ss_pred CCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCC
Confidence 77666 444555 56889998877654333222 35799999999998655443345 778887665433 3321
Q ss_pred ----ccceEEEEEcCCCCeEEEEEeCCCeE-EEEEcC
Q 005656 376 ----DVSITALSLSPNMDVLATAHVDQNGV-YLWVNR 407 (685)
Q Consensus 376 ----~~~v~~v~~spdg~~Lat~~~d~~~I-~lW~~~ 407 (685)
...|.++...++|.+.+++. + ++ +.|+..
T Consensus 534 ~~l~~~~i~~i~~d~~g~lWi~T~-~--Glv~~~d~~ 567 (781)
T 3v9f_A 534 EGFCSNTINQIYRSSKGQMWLATG-E--GLVCFPSAR 567 (781)
T ss_dssp TTCSCSCEEEEEECTTSCEEEEET-T--EEEEESCTT
T ss_pred CCCCCCeeEEEEECCCCCEEEEEC-C--CceEEECCC
Confidence 23489999999998666653 3 55 887653
No 251
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=9.7e-06 Score=92.26 Aligned_cols=335 Identities=13% Similarity=0.089 Sum_probs=197.8
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec------ccccCeeEEEEeCCCcEEEEecCCCcEEEEEec
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANEPVLMSASADNSIKMWIFD 76 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~ 76 (685)
..|.++...++|. + -.|+.++-|..||..+++....... -....|.++...+++.+.+... + -+.+|+..
T Consensus 163 ~~i~~i~~d~~g~-l-wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-~-Gl~~~d~~ 238 (781)
T 3v9f_A 163 EQTWTATEAEDGK-L-YIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-K-GLALFNAN 238 (781)
T ss_dssp CCEEEEEEEETTE-E-EEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-T-EEEEEETT
T ss_pred cceEEEEECCCCC-E-EEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-C-cHheECCC
Confidence 3578888888886 4 4456564589999888765432110 1135689999888887666543 3 57788765
Q ss_pred CCCCCCceeEecc-------cCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhcccccccc
Q 005656 77 TTDGDPRLLRFRS-------GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 149 (685)
Q Consensus 77 ~~~~~~~~~~~~~-------~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (685)
.. +...... -....|.++...++|. |..|+..+-|.+++..+........ .
T Consensus 239 ~~----~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-~---------------- 296 (781)
T 3v9f_A 239 TE----TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQ-I---------------- 296 (781)
T ss_dssp TT----EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-------------------------
T ss_pred CC----cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeec-c----------------
Confidence 43 2111111 1245688888877775 5556664567888865543211000 0
Q ss_pred ccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 005656 150 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 229 (685)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~ 229 (685)
.+. .+ .. ...........|.++...++|+ +.+|+.++-|..|
T Consensus 297 ~f~---~~----------------------------~~------~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~ 338 (781)
T 3v9f_A 297 RFE---FI----------------------------RE------GDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFI 338 (781)
T ss_dssp -CE---EE----------------------------CB------CSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEE
T ss_pred ccc---cc----------------------------cC------CCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEe
Confidence 000 00 00 0000002245688999888886 6678877779999
Q ss_pred ECCCCcccccccccc-ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee----cCCceeEEEEeec
Q 005656 230 NLQSGISRGSYLDMS-ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE----VGCSLVKIVYHRV 304 (685)
Q Consensus 230 d~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~ 304 (685)
+..++.......... .....-....|.++..+++|. |..|+.++-|..||..++....... ....|.++...++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~ 417 (781)
T 3v9f_A 339 SNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSE 417 (781)
T ss_dssp CSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTT
T ss_pred CCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCC
Confidence 887654432211000 000012345799999988876 5566666779999987654332111 1256778887776
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee------c
Q 005656 305 NGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV------D 376 (685)
Q Consensus 305 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~------~ 376 (685)
+.+ .+|+.++-+..+|..+++...... .....|.++...++|++.+ |+. +-|..||..+++....... .
T Consensus 418 g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~ 494 (781)
T 3v9f_A 418 GNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLE 494 (781)
T ss_dssp SCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSC
T ss_pred CCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCccccccc
Confidence 664 457776789999988776433221 1346799999988887544 444 4589999887765443322 2
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 377 VSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 377 ~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
..|.++...++|.+.+.+. ++ +|+.|+..
T Consensus 495 ~~i~~i~~d~~g~lWigt~-~~-Gl~~~~~~ 523 (781)
T 3v9f_A 495 NFVRSIAQDSEGRFWIGTF-GG-GVGIYTPD 523 (781)
T ss_dssp SCEEEEEECTTCCEEEEES-SS-CEEEECTT
T ss_pred ceeEEEEEcCCCCEEEEEc-CC-CEEEEeCC
Confidence 3499999999998666543 33 67778643
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.88 E-value=2.6e-07 Score=88.55 Aligned_cols=193 Identities=9% Similarity=0.007 Sum_probs=134.8
Q ss_pred CeEEEEecCCCEEEEEeC--CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEE
Q 005656 95 PLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 172 (685)
Q Consensus 95 v~~i~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (685)
...+.|++++...++.+. ++.|+++|+.+++....+..
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l---------------------------------------- 62 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM---------------------------------------- 62 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC----------------------------------------
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec----------------------------------------
Confidence 579999998755555443 57999999999887665531
Q ss_pred EEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCccccccccccccccCCC
Q 005656 173 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAH 251 (685)
Q Consensus 173 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h 251 (685)
........+++. |+.++++ ..++.+.++|..+.+....+.. +
T Consensus 63 ---------------------------~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~-------g- 105 (266)
T 2iwa_A 63 ---------------------------DDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTH-------Q- 105 (266)
T ss_dssp ---------------------------CTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEEC-------C-
T ss_pred ---------------------------CCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEEC-------C-
Confidence 011112234443 4455444 4578999999999988877642 2
Q ss_pred CcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecCC------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656 252 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC------SLVKIVYHRVNGLLATVADDLVIRLFDVVAL 325 (685)
Q Consensus 252 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~ 325 (685)
...-.+ ++++++.++++..++.|.++|..+.+....+.... .+..+.|. ++.+++....++.|.+.|..++
T Consensus 106 ~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 106 MKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG 182 (266)
T ss_dssp SSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred CCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence 111133 44567777777678999999999998888877542 35677887 6765555556889999999999
Q ss_pred eeEEEEecC-------------CCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCC
Q 005656 326 RMVRKFEGH-------------TDRITDFCFSEDGKWLL-SSGMDGSLRIWDVILA 367 (685)
Q Consensus 326 ~~~~~~~~h-------------~~~I~~l~~spdg~~l~-s~s~Dg~I~iwd~~~~ 367 (685)
+.+..+.-. ....+.++|+|+++.++ ++...+.|.+.++...
T Consensus 183 ~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999988631 13568999999987554 5557788888887654
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.88 E-value=5.4e-07 Score=85.15 Aligned_cols=182 Identities=12% Similarity=0.057 Sum_probs=133.0
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 282 (685)
.....+.|+ ++...++.+.+|.|+++|+.+++...... ......-++++.. ++..+..-.++.+.+||..
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l--------~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMER--------LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEE--------CTTCCEEEEEECS-SCEEEEESSSCEEEEEETT
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEEC--------CCCcceeEEEEeC-CEEEEEEccCCEEEEEECC
Confidence 345677887 35555666777899999999998877651 1112223455543 2444444468999999999
Q ss_pred CCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEeCCC
Q 005656 283 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~spdg~~l~s~s~Dg 357 (685)
+.+.+.++.....-. .++++++.|+++..++.|.++|..+.+.++++.-.. ..++.+.|. +|+..+..-.+.
T Consensus 125 Tl~~~~ti~~~~eGw--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~ 201 (268)
T 3nok_A 125 PPQRERTTRYSGEGW--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS 201 (268)
T ss_dssp TTEEEEEEECSSCCC--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred cCcEEEEEeCCCcee--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence 999999988764333 334678888888889999999999999988876322 246778887 776555555678
Q ss_pred cEEEEEcCCCceeeEEeec--------------cceEEEEEcCCCCeEEEEEeC
Q 005656 358 SLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 358 ~I~iwd~~~~~~i~~~~~~--------------~~v~~v~~spdg~~Lat~~~d 397 (685)
.|.+.|..+|+.+..+... .-.+.++|+|+++.|++++..
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 9999999999999988753 137899999998888887654
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.87 E-value=2.7e-07 Score=87.22 Aligned_cols=190 Identities=14% Similarity=0.105 Sum_probs=130.5
Q ss_pred ceeEecccCCCCC--eEEEEecCCCEEEEEeCCC--ceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 83 RLLRFRSGHSAPP--LCIRFYANGRHILSAGQDR--AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 83 ~~~~~~~~h~~~v--~~i~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
+++..+ .|.... ..+.|+ ++..+.+++.+| .|+++|+.+++....+..
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-------------------------- 83 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-------------------------- 83 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--------------------------
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--------------------------
Confidence 344444 455555 788998 677777777776 899999999887666531
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISR 237 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~ 237 (685)
........+.+.++.++..+ .++.+.+||..+.+..
T Consensus 84 -------------------------------------------~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 84 -------------------------------------------GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp -------------------------------------------CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred -------------------------------------------CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 11111212223355555544 5789999999999998
Q ss_pred cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC------CceeEEEEeecCCEEEEE
Q 005656 238 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATV 311 (685)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~ 311 (685)
.++.. + ..-.+++ ++++.|+.+..++.|.++|..+.+....+... ..++.+.+. +|.+.+..
T Consensus 121 ~ti~~-------~--~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~ 188 (262)
T 3nol_A 121 RSFNY-------D--GEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV 188 (262)
T ss_dssp EEEEC-------S--SCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEEEC-------C--CCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence 88752 1 1113444 45666666666788999999999988887653 234456776 67666555
Q ss_pred eCCCeEEEEEcCCCeeEEEEecC------------CCCeEEEEEcCCCCEEEEEeC
Q 005656 312 ADDLVIRLFDVVALRMVRKFEGH------------TDRITDFCFSEDGKWLLSSGM 355 (685)
Q Consensus 312 ~~dg~I~i~d~~~~~~~~~~~~h------------~~~I~~l~~spdg~~l~s~s~ 355 (685)
-.++.|.+.|..+++.+..+.-. ....+.|||+|+++.|+..+.
T Consensus 189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 57889999999999999988642 135689999999887777664
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.87 E-value=7.1e-07 Score=83.68 Aligned_cols=183 Identities=12% Similarity=0.082 Sum_probs=131.1
Q ss_pred CCCeEEEEEccCCCEEEEEecC--CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCCeEEE
Q 005656 202 PTAVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKV 278 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~d--g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~i 278 (685)
......+.|++ +....+.+.. ..|+.+|+.+++......- .....--++++. +..|+.. -.++.+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-------~~~~fgeGi~~~--~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-------PPPYFGAGIVAW--RDRLIQLTWRNHEGFV 89 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-------CTTCCEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-------CCCcceeEEEEe--CCEEEEEEeeCCEEEE
Confidence 34566888876 4444444443 4899999999998876631 111112334444 4444444 46899999
Q ss_pred EECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEE
Q 005656 279 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 279 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~spdg~~l~s~ 353 (685)
||..+.+.+.++.....-. .+.++++.|+++..++.|.++|..+.+.++++.-.. ..++.+.|. +|+..+..
T Consensus 90 ~D~~tl~~~~ti~~~~~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 90 YDLATLTPRARFRYPGEGW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp EETTTTEEEEEEECSSCCC--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EECCcCcEEEEEeCCCCce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 9999999999998764333 344678877777778999999999999988876422 346777776 67655555
Q ss_pred eCCCcEEEEEcCCCceeeEEeec--------------cceEEEEEcCCCCeEEEEEeC
Q 005656 354 GMDGSLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 354 s~Dg~I~iwd~~~~~~i~~~~~~--------------~~v~~v~~spdg~~Lat~~~d 397 (685)
-.+..|.+.|..+|+.+..+... .-.+.++++|+++.|++++..
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 46779999999999999988743 127899999999888888755
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.85 E-value=1.2e-06 Score=88.20 Aligned_cols=198 Identities=9% Similarity=-0.016 Sum_probs=124.3
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEEC----------
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGY---------- 272 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~---------- 272 (685)
.+..+++.+++..++++...+.|..+|..++.... +... ...........+++++ +|+..++...
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~-~~~~---~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQ-LATS---VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEE-EESE---ETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEE-eccc---CCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence 46788898733456666555568889877654321 1100 0001123578899999 8986666432
Q ss_pred -------CCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCe--eEEEEecCCCCeEEEE
Q 005656 273 -------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALR--MVRKFEGHTDRITDFC 342 (685)
Q Consensus 273 -------dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~--~~~~~~~h~~~I~~l~ 342 (685)
+|.|..||..+++.......-.....++++|+++.|+++ ..++.|.+|++.... ....+....+ ...++
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred ehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 367999998777654433333456679999999966665 556899999987521 1222222233 78899
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEEcCCCceeeEEeecc-----ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 343 FSEDGKWLLSSGM----------DGSLRIWDVILARQIDAIHVDV-----SITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 343 ~spdg~~l~s~s~----------Dg~I~iwd~~~~~~i~~~~~~~-----~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
+.++|++.++... .+.|..+|. .++.+..+.... .++++++ .++ .|+.++...+.|..++..
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEECSSCSEEEEEEC-
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEeecCCCceEEEecc
Confidence 9999987666544 466888885 588887776542 3667776 344 566665555588888755
Q ss_pred CC
Q 005656 408 CM 409 (685)
Q Consensus 408 ~~ 409 (685)
..
T Consensus 313 ~~ 314 (322)
T 2fp8_A 313 KK 314 (322)
T ss_dssp --
T ss_pred cc
Confidence 43
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.79 E-value=6e-06 Score=82.27 Aligned_cols=245 Identities=7% Similarity=-0.021 Sum_probs=140.0
Q ss_pred CeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 35 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 35 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
.+.+..+. . .....+++|+++++++++...++.|..|+.+.. ..... .....+..+++.++|+.+++.....
T Consensus 22 ~~~~~~~p-~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----~~~~~-~~~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 22 AKIITSFP-V-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----QQIHA-TVEGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp EEEEEEEC-T-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----EEEEE-ECSSEEEEEEECTTSCEEEEEECTT
T ss_pred ceEeEeCC-C-CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-----eEEEE-eCCCCceeEEEcCCCcEEEEeccCC
Confidence 34444553 1 256789999999998888777888888865432 22221 1234688999999998655543332
Q ss_pred c--eEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCc
Q 005656 115 A--FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 192 (685)
Q Consensus 115 ~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 192 (685)
. |..++..+++...... .
T Consensus 94 ~~~v~~~d~~~g~~~~~~~-----------------------------------------------------~------- 113 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVETLLT-----------------------------------------------------L------- 113 (306)
T ss_dssp SCEEEEEECTTSCEEEEEE-----------------------------------------------------C-------
T ss_pred cceEEEEcCCCCeEEEEEe-----------------------------------------------------C-------
Confidence 3 4445544443221110 0
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccc-cc-ccccccCCCCcCEEEEEEcCCCCEEEEE
Q 005656 193 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY-LD-MSERSNYAHNGEVVGVACDSTNTLMISA 270 (685)
Q Consensus 193 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~-~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 270 (685)
........++..+.+..+++-..+|.|+++|..++...... .. .........-....++ +++++.++.+
T Consensus 114 -------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 114 -------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS 184 (306)
T ss_dssp -------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred -------CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence 00111233444454444444445888999998764211100 00 0000000112244555 6777766555
Q ss_pred E-CCCeEEEEECCC-Cce--EEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE--EEecCCCCeEEEEEc
Q 005656 271 G-YHGDIKVWDFKG-RDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR--KFEGHTDRITDFCFS 344 (685)
Q Consensus 271 s-~dg~i~iwd~~~-~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~~~I~~l~~s 344 (685)
. ..+.|..+++.. +.. ...+........++++++|+++++....+.|.++|.. ++... .+......+++++|.
T Consensus 185 d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 185 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred eCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence 4 668999999875 332 1122212345678999999887777778899999975 55432 233334568999998
Q ss_pred ---CCCCEEEEEeCCC
Q 005656 345 ---EDGKWLLSSGMDG 357 (685)
Q Consensus 345 ---pdg~~l~s~s~Dg 357 (685)
||++.|+.++..+
T Consensus 264 g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 264 QTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CSTTTTTEEEEEECTT
T ss_pred cccCCCCEEEEECCCC
Confidence 8988777666543
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.78 E-value=7.8e-07 Score=96.66 Aligned_cols=193 Identities=12% Similarity=0.065 Sum_probs=125.9
Q ss_pred CCEEEEEec------CCcEEEEECCCCcccccccccccccc----------------------------CCCCc--CEEE
Q 005656 214 GNFAVLGTA------GGWIERFNLQSGISRGSYLDMSERSN----------------------------YAHNG--EVVG 257 (685)
Q Consensus 214 g~~l~~g~~------dg~i~~~d~~~~~~~~~~~~~~~~~~----------------------------~~h~~--~v~~ 257 (685)
+..+++++. +|.|+.+|..+|+.+..+........ ..+.+ ....
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~ 239 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence 345666665 78999999999988766542111000 00000 0123
Q ss_pred EEEcCCCCEEEEEECC----------------CeEEEEECCCCceEEEeecCC----------ceeEEEEeecCC---EE
Q 005656 258 VACDSTNTLMISAGYH----------------GDIKVWDFKGRDLKSRWEVGC----------SLVKIVYHRVNG---LL 308 (685)
Q Consensus 258 l~~~~~~~~l~s~s~d----------------g~i~iwd~~~~~~~~~~~~~~----------~i~~~~~~~~~~---~l 308 (685)
+++++....++.++.+ +.|..+|..+++.+..++... ...-+....+|+ .+
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v 319 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL 319 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence 5677766666666532 369999999999988776421 111122334674 67
Q ss_pred EEEeCCCeEEEEEcCCCeeEEEEecCC-------------CCe--------------------------EEEEEcCCCCE
Q 005656 309 ATVADDLVIRLFDVVALRMVRKFEGHT-------------DRI--------------------------TDFCFSEDGKW 349 (685)
Q Consensus 309 ~~~~~dg~I~i~d~~~~~~~~~~~~h~-------------~~I--------------------------~~l~~spdg~~ 349 (685)
+.++.+|.++++|..+|+.+..+.-.. .++ ..++++|+..+
T Consensus 320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~ 399 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRT 399 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCE
Confidence 788999999999999999887765221 111 23578888777
Q ss_pred EEEEe-------------------------------------CCCcEEEEEcCCCceeeEEeeccceEEEEEcCCCCeEE
Q 005656 350 LLSSG-------------------------------------MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLA 392 (685)
Q Consensus 350 l~s~s-------------------------------------~Dg~I~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~La 392 (685)
++..+ .+|.|..||..+|+.+..+....++.+..+...+..++
T Consensus 400 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~ 479 (571)
T 2ad6_A 400 LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVW 479 (571)
T ss_dssp EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEE
T ss_pred EEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEE
Confidence 76653 35789999999999988887665544444444567777
Q ss_pred EEEeCCCeEEEEEcC
Q 005656 393 TAHVDQNGVYLWVNR 407 (685)
Q Consensus 393 t~~~d~~~I~lW~~~ 407 (685)
+++.|+ .|+.|+.+
T Consensus 480 ~g~~dg-~l~a~D~~ 493 (571)
T 2ad6_A 480 YATLDG-YLKALDNK 493 (571)
T ss_dssp EECTTS-EEEEEETT
T ss_pred EEcCCC-eEEEEECC
Confidence 787776 89999843
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.75 E-value=1.4e-06 Score=87.71 Aligned_cols=241 Identities=11% Similarity=0.045 Sum_probs=144.3
Q ss_pred cCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc-----------------cCCCCCeEEEEec-CCCEEE
Q 005656 47 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-----------------GHSAPPLCIRFYA-NGRHIL 108 (685)
Q Consensus 47 ~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~-----------------~h~~~v~~i~~~~-~~~~l~ 108 (685)
....+++|.+++++++++..++.|..|+.+.. ....+.... .....+..+++.+ ++ .|+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS--GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTT--CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCC--ceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEE
Confidence 34577889999987888888888888865543 111111100 0113578899997 55 455
Q ss_pred EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCcc
Q 005656 109 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 188 (685)
Q Consensus 109 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 188 (685)
.+...+.|..+|..++.. ..+.... .
T Consensus 96 v~d~~~~i~~~d~~~g~~-~~~~~~~---------------------------------------------------~-- 121 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHA-TQLATSV---------------------------------------------------D-- 121 (322)
T ss_dssp EEETTTEEEEECTTCEEC-EEEESEE---------------------------------------------------T--
T ss_pred EEECCCCEEEEeCCCCEE-EEecccC---------------------------------------------------C--
Confidence 555555577776543321 1110000 0
Q ss_pred ccCceeecCCCCCCCCeEEEEEcc-CCCEEEEEec-----------------CCcEEEEECCCCccccccccccccccCC
Q 005656 189 VLGEHILRPCPENPTAVKACTISA-CGNFAVLGTA-----------------GGWIERFNLQSGISRGSYLDMSERSNYA 250 (685)
Q Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 250 (685)
+ ........+++.+ +|+..++-.. +|.|..||..++...... .
T Consensus 122 --~--------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~---------~ 182 (322)
T 2fp8_A 122 --G--------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL---------K 182 (322)
T ss_dssp --T--------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE---------E
T ss_pred --C--------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec---------c
Confidence 0 0012356788888 7875555432 367888988766543221 1
Q ss_pred CCcCEEEEEEcCCCCEEEEE-ECCCeEEEEECCCC---ceEEEeecCCceeEEEEeecCCEEEEEeC----------CCe
Q 005656 251 HNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGR---DLKSRWEVGCSLVKIVYHRVNGLLATVAD----------DLV 316 (685)
Q Consensus 251 h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~ 316 (685)
......+++++++++.++.+ +..+.|..|++... .........+ ...+++.++|++.++... .+.
T Consensus 183 ~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~ 261 (322)
T 2fp8_A 183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPK 261 (322)
T ss_dssp EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEE
T ss_pred CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccE
Confidence 11234579999999866655 45689999998752 2111112233 778999999986666544 467
Q ss_pred EEEEEcCCCeeEEEEecCC----CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 317 IRLFDVVALRMVRKFEGHT----DRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 317 I~i~d~~~~~~~~~~~~h~----~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
|..+|.. ++.+..+.... ..++.+++ .++++.++....+.|.++++..
T Consensus 262 v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 262 GIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 8888874 77777776442 35777777 3565555555778899998753
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=5.9e-06 Score=82.33 Aligned_cols=184 Identities=12% Similarity=0.067 Sum_probs=114.6
Q ss_pred CeEEEEEccCCCEEEEEecC--CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 204 AVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~d--g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
.+..++++++|+.+++.... ..|..++..++........ .......+++..+.+..+++...++.|+++|.
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL-------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-------TTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-------CCccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence 47789999999966655433 2477888877765322210 11223345555555554554446889999998
Q ss_pred CCCce-EEEe-------ec--C-CceeEEEEeecCCEEEEE-eCCCeEEEEEcCC-Cee--EEEEecCCCCeEEEEEcCC
Q 005656 282 KGRDL-KSRW-------EV--G-CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVA-LRM--VRKFEGHTDRITDFCFSED 346 (685)
Q Consensus 282 ~~~~~-~~~~-------~~--~-~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~-~~~--~~~~~~h~~~I~~l~~spd 346 (685)
.++.. +... .. . .....+ +++++.|+++ ...+.|..||+.. ++. ...+.. ......++++++
T Consensus 146 ~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~d 222 (306)
T 2p4o_A 146 VQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVE 222 (306)
T ss_dssp TTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTT
T ss_pred CCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCC
Confidence 76432 1100 00 1 223444 8888766555 4578999999874 321 122221 134677899999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceee--EEeec-cceEEEEEc---CCCCeEEEEEeCC
Q 005656 347 GKWLLSSGMDGSLRIWDVILARQID--AIHVD-VSITALSLS---PNMDVLATAHVDQ 398 (685)
Q Consensus 347 g~~l~s~s~Dg~I~iwd~~~~~~i~--~~~~~-~~v~~v~~s---pdg~~Lat~~~d~ 398 (685)
|++.++....+.|.+++.. |+... .+... ..+++++|. |+++.|++++..+
T Consensus 223 G~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 223 GNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 9887777778899999964 66533 23333 348999999 8988888887653
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.69 E-value=5.6e-06 Score=90.03 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=60.7
Q ss_pred CCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCe-EEEEEcCCCC-EE
Q 005656 273 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WL 350 (685)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I-~~l~~spdg~-~l 350 (685)
+|.|..||+.+++.+.+.....+...-.....+.++++++.|+.++.||.++|+.+.+++...+.+ .-+.|..+|+ |+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 588999999999998887766444433334457888889999999999999999999988543322 2256777887 44
Q ss_pred EEEe
Q 005656 351 LSSG 354 (685)
Q Consensus 351 ~s~s 354 (685)
++.+
T Consensus 545 ~~~~ 548 (582)
T 1flg_A 545 GVTV 548 (582)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 4443
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.69 E-value=3.1e-06 Score=91.92 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=58.2
Q ss_pred CCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCe-EEEEEcCCCC-EE
Q 005656 273 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WL 350 (685)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I-~~l~~spdg~-~l 350 (685)
+|.|..||+.+++.+.......+...-.+...+.++++++.|+.++.||.++|+.+.+++-..+.+ .-+.+..+|+ |+
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 478999999999998887655443332334467888889999999999999999999887443221 2245556776 44
Q ss_pred EEEe
Q 005656 351 LSSG 354 (685)
Q Consensus 351 ~s~s 354 (685)
++.+
T Consensus 532 ~~~~ 535 (599)
T 1w6s_A 532 AIYY 535 (599)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 4443
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.69 E-value=4.8e-06 Score=78.07 Aligned_cols=130 Identities=16% Similarity=0.098 Sum_probs=93.3
Q ss_pred CCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec
Q 005656 214 GNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 292 (685)
Q Consensus 214 g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (685)
++.+ ++...++.+.+||..+.+...++.. + ..-.+++ +++..|+.+..++.|.++|..+.+....+..
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-------~--~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLATLTPRARFRY-------P--GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEEC-------S--SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CCEEEEEEeeCCEEEEEECCcCcEEEEEeC-------C--CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 4444 4445688999999999999888752 1 2224555 4566666666688999999999988887765
Q ss_pred C------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecC-------------CCCeEEEEEcCCCCEEEEE
Q 005656 293 G------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-------------TDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 293 ~------~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-------------~~~I~~l~~spdg~~l~s~ 353 (685)
. ..++.+.+. +|.+.+....+..|.+.|..+++.+..+.-. ....+.|+++|+++.|+..
T Consensus 143 ~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 143 TAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred ccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 3 344556655 5665555556889999999999999888621 1256899999988777666
Q ss_pred eC
Q 005656 354 GM 355 (685)
Q Consensus 354 s~ 355 (685)
+.
T Consensus 222 GK 223 (243)
T 3mbr_X 222 GK 223 (243)
T ss_dssp ET
T ss_pred CC
Confidence 53
No 264
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.67 E-value=3.1e-06 Score=94.08 Aligned_cols=272 Identities=12% Similarity=-0.015 Sum_probs=153.9
Q ss_pred EEEEeC-CCcEEEEecCCC-----------cEEEEEecCCCCCCceeEec-ccCCCCCeEEEEecCCCEEEEEeC-CCce
Q 005656 51 SLHFFA-NEPVLMSASADN-----------SIKMWIFDTTDGDPRLLRFR-SGHSAPPLCIRFYANGRHILSAGQ-DRAF 116 (685)
Q Consensus 51 ~l~~sp-~~~~l~s~s~D~-----------~v~iWd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~-dg~i 116 (685)
++++.+ ++++++.|+.++ .+.+||..+. ....+... ..+.....++++..+++.++.|+. ++.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~--~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG--IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC--CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC--cEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 667777 888888887543 4666766554 33333322 223333445788889999999884 4578
Q ss_pred EEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeec
Q 005656 117 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 196 (685)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 196 (685)
.+||..+++-...-
T Consensus 268 ~~yd~~t~~W~~~~------------------------------------------------------------------ 281 (656)
T 1k3i_A 268 SLYDSSSDSWIPGP------------------------------------------------------------------ 281 (656)
T ss_dssp EEEEGGGTEEEECC------------------------------------------------------------------
T ss_pred EEecCcCCceeECC------------------------------------------------------------------
Confidence 88887655321100
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEe-cC-----CcEEEEECCCCccccccccc-cccccCCCCcCEEEEEEcCCCCEEEE
Q 005656 197 PCPENPTAVKACTISACGNFAVLGT-AG-----GWIERFNLQSGISRGSYLDM-SERSNYAHNGEVVGVACDSTNTLMIS 269 (685)
Q Consensus 197 ~~~~~~~~v~~~~~s~~g~~l~~g~-~d-----g~i~~~d~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s 269 (685)
.. .....-.++++.++|+.+++|+ .+ ..+.+||..++.....-... .......+. ..+..++..++.
T Consensus 282 ~~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-----~~~~~~~~iyv~ 355 (656)
T 1k3i_A 282 DM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-----GLYRSDNHAWLF 355 (656)
T ss_dssp CC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-----GGGTTTCSCCEE
T ss_pred CC-CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-----ceeecCCceEEE
Confidence 00 1111123455667899999988 34 46999999887643320000 000000111 112234444455
Q ss_pred EECC---------CeEEEEECCCCceEEEeecC----------CceeEEEEee-cCCEEEEEeCCC-----------eEE
Q 005656 270 AGYH---------GDIKVWDFKGRDLKSRWEVG----------CSLVKIVYHR-VNGLLATVADDL-----------VIR 318 (685)
Q Consensus 270 ~s~d---------g~i~iwd~~~~~~~~~~~~~----------~~i~~~~~~~-~~~~l~~~~~dg-----------~I~ 318 (685)
++.+ ..+..||..+.......... ..-.++.+.. +++++++|+.++ .|.
T Consensus 356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~ 435 (656)
T 1k3i_A 356 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT 435 (656)
T ss_dssp ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence 5444 35678888776533322211 1123344433 677888887532 688
Q ss_pred EEEcCCCeeEEEE--ecCCCCe-EEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCceeeEEeeccc---eEE
Q 005656 319 LFDVVALRMVRKF--EGHTDRI-TDFCFSEDGKWLLSSGMD-----------GSLRIWDVILARQIDAIHVDVS---ITA 381 (685)
Q Consensus 319 i~d~~~~~~~~~~--~~h~~~I-~~l~~spdg~~l~s~s~D-----------g~I~iwd~~~~~~i~~~~~~~~---v~~ 381 (685)
+||..+.+-.... .-+..+. .+++..|+|++++.|+.+ ..+.+||..+++-...-....+ ..+
T Consensus 436 ~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~ 515 (656)
T 1k3i_A 436 LGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSI 515 (656)
T ss_dssp CCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEE
T ss_pred cCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccH
Confidence 8888876544332 2222332 345677899999999854 4689999877653321111111 345
Q ss_pred EEEcCCCCeEEEEEe
Q 005656 382 LSLSPNMDVLATAHV 396 (685)
Q Consensus 382 v~~spdg~~Lat~~~ 396 (685)
..+.|+|+.++.|+.
T Consensus 516 a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 516 SLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEECTTSCEEEEECC
T ss_pred hhcCCCcEEEecCCC
Confidence 567799999999885
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.67 E-value=7.8e-05 Score=75.53 Aligned_cols=253 Identities=11% Similarity=-0.025 Sum_probs=150.5
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcE-EEEecCCCcEEEEEecCCCCCCc
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~ 83 (685)
.+|.+..+++ +|+.+. ...|+..++........+. ....+..++|.+.+.. .++-...+.|..++.+...
T Consensus 36 ~~C~~~~~~~--~ll~~~-~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---- 106 (349)
T 3v64_C 36 RSCKALGPEP--VLLFAN-RIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---- 106 (349)
T ss_dssp SCEEESSSCC--EEEEEC-BSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----
T ss_pred CcccccccCc--eeEeec-ccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC----
Confidence 4566655533 344333 3568888887765554443 3345789999976554 4455567788888776542
Q ss_pred eeEecccCCCCCeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 84 LLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 84 ~~~~~~~h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
...........+..+++.+.+..|+ +-...+.|.+.++........+.
T Consensus 107 ~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~------------------------------- 155 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW------------------------------- 155 (349)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------------------------------
T ss_pred ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-------------------------------
Confidence 1122222334567899987655554 44456677777764322111110
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-cC-CcEEEEECCCCcccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AG-GWIERFNLQSGISRGSY 240 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d-g~i~~~d~~~~~~~~~~ 240 (685)
........+++.|.+..++... .. +.|..+++.........
T Consensus 156 -------------------------------------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 198 (349)
T 3v64_C 156 -------------------------------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA 198 (349)
T ss_dssp -------------------------------------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC
T ss_pred -------------------------------------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence 1234468899998666665554 34 78999988754322211
Q ss_pred ccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEE
Q 005656 241 LDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIR 318 (685)
Q Consensus 241 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~ 318 (685)
. ..-....++++++++..|+.+. ..+.|..+|+........+.. ......+++ ..+.++++-...+.|.
T Consensus 199 ~--------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 199 D--------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSIN 269 (349)
T ss_dssp C--------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred E--------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEE
Confidence 1 2234578999998777666654 567899999875443333322 234566777 3455666666678888
Q ss_pred EEEcCCCeeEEEEecCCCCeEEEEE
Q 005656 319 LFDVVALRMVRKFEGHTDRITDFCF 343 (685)
Q Consensus 319 i~d~~~~~~~~~~~~h~~~I~~l~~ 343 (685)
.++..+++.+..+........++++
T Consensus 270 ~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 270 SANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp EEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EEEccCCCccEEeccCCCCCceEEE
Confidence 8887777766666544444445544
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.65 E-value=3.9e-06 Score=79.27 Aligned_cols=188 Identities=12% Similarity=0.079 Sum_probs=127.5
Q ss_pred eeEecccCCCCC--eEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccc
Q 005656 84 LLRFRSGHSAPP--LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 161 (685)
Q Consensus 84 ~~~~~~~h~~~v--~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (685)
.+..+ .|.... ..+.|+ ++.+.++.+.+|.|+++|+.+++....+ ..
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~---------------------------- 93 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL---------------------------- 93 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC----------------------------
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC----------------------------
Confidence 34444 454443 678887 4667778888899999999988765544 10
Q ss_pred ccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccc
Q 005656 162 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 241 (685)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~ 241 (685)
.....-.+++.. ++..++...++.+.+||..+.+...++.
T Consensus 94 ---------------------------------------~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 94 ---------------------------------------GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp ---------------------------------------TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred ---------------------------------------CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 011112233332 2333444568899999999999988875
Q ss_pred cccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC------CceeEEEEeecCCEEEEEeCCC
Q 005656 242 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDL 315 (685)
Q Consensus 242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg 315 (685)
. . ..-.+++ ++++.|+.+..++.|.++|..+.+....+... ..++.+.|. +|.+.+....++
T Consensus 134 ~-------~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~ 201 (268)
T 3nok_A 134 Y-------S--GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS 201 (268)
T ss_dssp C-------S--SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred C-------C--CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence 2 1 2223455 45677777777899999999999988887653 244566766 676555555688
Q ss_pred eEEEEEcCCCeeEEEEecC-------------CCCeEEEEEcCCCCEEEEEe
Q 005656 316 VIRLFDVVALRMVRKFEGH-------------TDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 316 ~I~i~d~~~~~~~~~~~~h-------------~~~I~~l~~spdg~~l~s~s 354 (685)
.|.+.|..+++.+..+.-. ....+.|+|+|+++.|+..+
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999999999888632 13578999999776555554
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.62 E-value=1.4e-06 Score=96.93 Aligned_cols=281 Identities=10% Similarity=-0.001 Sum_probs=153.1
Q ss_pred EEEEcc-CCCCEEEEEeCCC-----------cEEEEeCCCCeee--EEeecccccCeeEEEEeCCCcEEEEecC-CCcEE
Q 005656 7 ALAFSS-DGQPLLASGASSG-----------VISIWNLEKRRLQ--SVIREAHDNAIISLHFFANEPVLMSASA-DNSIK 71 (685)
Q Consensus 7 ~l~fsp-dg~~~latg~~dg-----------~I~vwd~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s~-D~~v~ 71 (685)
++++.+ +|+ +++.|+.++ .+.+||..+++.. ..+...+.....++++..++++++.|+. ++.+.
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 556777 787 888887543 5889999887643 2332234444456788899999999985 45788
Q ss_pred EEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEe-CC-----CceEEEEeecCceeeEechhhHHHHHhhcccc
Q 005656 72 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 145 (685)
Q Consensus 72 iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (685)
+||..+.. +..+..... ...-.+++..++|+.++.|+ .+ ..+.+||..+++-... ...
T Consensus 269 ~yd~~t~~--W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~------------ 332 (656)
T 1k3i_A 269 LYDSSSDS--WIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNA------------ 332 (656)
T ss_dssp EEEGGGTE--EEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTS------------
T ss_pred EecCcCCc--eeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCc------------
Confidence 88877642 122211111 11223456667899888888 34 4678888765542211 000
Q ss_pred ccccccCceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC--
Q 005656 146 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-- 223 (685)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-- 223 (685)
...|.. .... ...+..++...++|+.+
T Consensus 333 ----~~~p~~--------------------------------------------~~~~---~~~~~~~~~iyv~Gg~~g~ 361 (656)
T 1k3i_A 333 ----KVNPML--------------------------------------------TADK---QGLYRSDNHAWLFGWKKGS 361 (656)
T ss_dssp ----CSGGGC--------------------------------------------CCCT---TGGGTTTCSCCEEECGGGC
T ss_pred ----cccccc--------------------------------------------cccc---cceeecCCceEEEECCCCc
Confidence 000000 0000 00111223333333333
Q ss_pred -------CcEEEEECCCCcccccccccccc-ccCCCCcCEEEEEEcC-CCCEEEEEECCC-----------eEEEEECCC
Q 005656 224 -------GWIERFNLQSGISRGSYLDMSER-SNYAHNGEVVGVACDS-TNTLMISAGYHG-----------DIKVWDFKG 283 (685)
Q Consensus 224 -------g~i~~~d~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~-~~~~l~s~s~dg-----------~i~iwd~~~ 283 (685)
..+..||..+............. ........-.++.+.. +++.++.|+.++ .|.+||..+
T Consensus 362 ~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~ 441 (656)
T 1k3i_A 362 VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT 441 (656)
T ss_dssp EEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTS
T ss_pred EEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCC
Confidence 35778888776543221100000 0000111223444443 567777777532 678888877
Q ss_pred CceEEEe--ecC--CceeEEEEeecCCEEEEEeCC-----------CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCC
Q 005656 284 RDLKSRW--EVG--CSLVKIVYHRVNGLLATVADD-----------LVIRLFDVVALRMVRK--FEGHTDRITDFCFSED 346 (685)
Q Consensus 284 ~~~~~~~--~~~--~~i~~~~~~~~~~~l~~~~~d-----------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spd 346 (685)
....... ..+ ..-.+++..|+++++++|+.+ ..+.+||..+.+-... +...........+.||
T Consensus 442 ~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~d 521 (656)
T 1k3i_A 442 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPD 521 (656)
T ss_dssp CCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTT
T ss_pred CCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCC
Confidence 6654432 222 223455677899999998854 4689999987653321 1112222344567799
Q ss_pred CCEEEEEeC
Q 005656 347 GKWLLSSGM 355 (685)
Q Consensus 347 g~~l~s~s~ 355 (685)
|+.++.|+.
T Consensus 522 g~v~v~GG~ 530 (656)
T 1k3i_A 522 GRVFNGGGG 530 (656)
T ss_dssp SCEEEEECC
T ss_pred cEEEecCCC
Confidence 999999985
No 268
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.61 E-value=0.0014 Score=71.47 Aligned_cols=151 Identities=7% Similarity=-0.084 Sum_probs=93.4
Q ss_pred EEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC-CceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCeeEEEE
Q 005656 255 VVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG-LLATVADDLVIRLFDVVALRMVRKF 331 (685)
Q Consensus 255 v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~ 331 (685)
+.+++|++.+..|+.+. ..+.|+.++.........+... .....+++.+.++ ++++-...+.|.+.++........+
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~ 430 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILI 430 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEE
Confidence 45666666544444443 4566777776654333333222 4567889987555 5555556789999998755332223
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCceeeEEee-c-cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 332 EGHTDRITDFCFSEDGKWLLSSGM--DGSLRIWDVILARQIDAIHV-D-VSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 332 ~~h~~~I~~l~~spdg~~l~s~s~--Dg~I~iwd~~~~~~i~~~~~-~-~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
...-....++++.|...+|..+.. .+.|...++.. .....+.. . ...+.+++++++..|+.+....+.|...+.
T Consensus 431 ~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 431 SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG-SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC-CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 334467899999997555555542 35676666653 33333322 2 238899999998889888776667777764
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=1.8e-05 Score=82.78 Aligned_cols=194 Identities=9% Similarity=0.049 Sum_probs=117.4
Q ss_pred CCCeEEEEEccCCCEEEEEecC-C----cEEEEECCCCccc--cccccccccccCCCCcCEEEEEEcC-CCCEEEEEECC
Q 005656 202 PTAVKACTISACGNFAVLGTAG-G----WIERFNLQSGISR--GSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYH 273 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~d-g----~i~~~d~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~d 273 (685)
......++++++|+++++.... + .+.+++.. +... ..+ .......+++++| ++.++++-..+
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l---------~~~~~p~giavdp~~g~lyv~d~~~ 247 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITEL---------TKGQNCNGAETHPINGELYFNSWNA 247 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEE---------EECSSCCCEEECTTTCCEEEEETTT
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeee---------ccCCCceEEEEeCCCCEEEEEECCC
Confidence 3457899999999977666542 2 34444432 2221 111 1123356788999 66666665577
Q ss_pred CeEEEEECCCCceEEEeec--CCceeEEEEeecCCEEEE-EeCCCeEEEEEcCC--Cee--EEEEecC------------
Q 005656 274 GDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLAT-VADDLVIRLFDVVA--LRM--VRKFEGH------------ 334 (685)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~-~~~dg~I~i~d~~~--~~~--~~~~~~h------------ 334 (685)
+.|..++..++........ ......++++|++++|++ -...+.|..++... ++. +..+.+.
T Consensus 248 ~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~ 327 (430)
T 3tc9_A 248 GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGK 327 (430)
T ss_dssp TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGG
T ss_pred CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCc
Confidence 8999999987765333322 245778999999995544 45678999988763 222 2223221
Q ss_pred ---CCCeE-EEEEc--------CCCCEEEEEeCCCcEEEEEcCCCceeeEEee---------cc---------ceEEEEE
Q 005656 335 ---TDRIT-DFCFS--------EDGKWLLSSGMDGSLRIWDVILARQIDAIHV---------DV---------SITALSL 384 (685)
Q Consensus 335 ---~~~I~-~l~~s--------pdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~---------~~---------~v~~v~~ 384 (685)
-.... .++.. ++|.+.++-...+.|+.++ .+|........ .. ....+++
T Consensus 328 ~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giav 406 (430)
T 3tc9_A 328 KARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVY 406 (430)
T ss_dssp GCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEE
T ss_pred ceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEE
Confidence 11233 45553 3455555555677899988 56654433321 11 3789999
Q ss_pred cCCCCeEEEEEeCCCeEEEEEc
Q 005656 385 SPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 385 spdg~~Lat~~~d~~~I~lW~~ 406 (685)
+|++..|+++....+.|+.++.
T Consensus 407 d~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 407 DEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp ETTTTEEEEEEGGGTEEEEEEE
T ss_pred ECCCCEEEEEECCCCeEEEEcc
Confidence 9976666666655557887753
No 270
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.60 E-value=0.0012 Score=77.31 Aligned_cols=367 Identities=13% Similarity=0.102 Sum_probs=195.3
Q ss_pred CCcEEEEEEccCC-----CCEEEEEeC-CCcEEEEeCCCCeeeEEeecccccCeeEEEEe--CCCcEEEEecCCCcEEEE
Q 005656 2 RGAVTALAFSSDG-----QPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMW 73 (685)
Q Consensus 2 ~~~V~~l~fspdg-----~~~latg~~-dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~s~D~~v~iW 73 (685)
.+.|+|+++.|.+ ..++|+|.. |++|+|+++.+.+.+....-+-.....++.+. ....+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 4679999998643 248999996 99999999998666544332222334444443 244688999999999888
Q ss_pred EecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCc
Q 005656 74 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 74 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
.++..++...-.+...--..++.-..|...|..-+.+..++...++.-. ++.. + ..+...+
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~--~----------------s~l~~~~ 693 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLV--F----------------SNVNLKE 693 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEE--E----------------EEBSSSC
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceE--E----------------eccChHH
Confidence 7775443322221111124466555554444433334445554444322 1111 1 0111111
Q ss_pred eeeeecccccccCC-cceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC---------
Q 005656 154 VIAFDCAEIRERDW-CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG--------- 223 (685)
Q Consensus 154 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--------- 223 (685)
+..+++-. .... ..++.+. +..+++..+.+.. +...... .-...++.++++|..+.+++++.+
T Consensus 694 v~~~~~F~--se~~~~g~v~~~--~~~LrI~~i~~~~--~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~ 766 (1158)
T 3ei3_A 694 VNYMCPLN--SDGYPDSLALAN--NSTLTIGTIDEIQ--KLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 766 (1158)
T ss_dssp CCEEEEEC--CSSSTTEEEEEC--SSCEEEEEECCSS--SEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSS
T ss_pred hceEeccC--cccCCCcEEEEc--CCceEEEEecccC--CeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccc
Confidence 11111111 1111 2233222 2336666654321 1111111 223567888888877766655422
Q ss_pred ----------------------------------------CcEEEEECCCCccccccccccccccCCCCcCEEEEEE---
Q 005656 224 ----------------------------------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--- 260 (685)
Q Consensus 224 ----------------------------------------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--- 260 (685)
+.|+++|..+.+....+. ......+.+++.
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~-------l~~nE~~~sv~~v~~ 839 (1158)
T 3ei3_A 767 TTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQ-------FLQNEYALSLVSCKL 839 (1158)
T ss_dssp EEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEE-------CCTTEEEEEEEEECC
T ss_pred cchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEe-------CCCCcceEEEEEEEE
Confidence 124455554444333221 122334445443
Q ss_pred cCC-CCEEEEEE----------CCCeEEEEECCCCceE--EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee
Q 005656 261 DST-NTLMISAG----------YHGDIKVWDFKGRDLK--SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 327 (685)
Q Consensus 261 ~~~-~~~l~s~s----------~dg~i~iwd~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~ 327 (685)
..+ ..+++.|. ..|.|.+|++..+++. ......+++++++-- +| +|++|- ..+|++|++...+.
T Consensus 840 ~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~ 916 (1158)
T 3ei3_A 840 GKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKE 916 (1158)
T ss_dssp TTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSC
T ss_pred ccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCce
Confidence 322 46787776 3478999998755433 344456888887755 34 444443 47899999987655
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCCCeEEE
Q 005656 328 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--ILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYL 403 (685)
Q Consensus 328 ~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~--~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~~~I~l 403 (685)
++.-..+-..|..+.....+++++.|..-..|.++.. ..+++...-+.. ..++++.|-.++ .++.+..++ .|++
T Consensus 917 L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~g-Nl~v 994 (1158)
T 3ei3_A 917 LRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAF-NLFV 994 (1158)
T ss_dssp EEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTS-EEEE
T ss_pred EEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCC-cEEE
Confidence 4421112222333333335788999987666766544 444444433332 238888887554 566677676 6777
Q ss_pred EEc
Q 005656 404 WVN 406 (685)
Q Consensus 404 W~~ 406 (685)
...
T Consensus 995 l~~ 997 (1158)
T 3ei3_A 995 CQK 997 (1158)
T ss_dssp EEE
T ss_pred Eec
Confidence 653
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.60 E-value=5.1e-05 Score=78.09 Aligned_cols=252 Identities=12% Similarity=-0.033 Sum_probs=149.7
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCce
Q 005656 6 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRL 84 (685)
Q Consensus 6 ~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~ 84 (685)
+|.+..+.+ +|+.+. ...|+.+++.+......+. ....+..++|.+.+. ++++-...+.|..++.+.. ..
T Consensus 80 ~C~~~~~~~--~l~~~~-~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~----~~ 150 (386)
T 3v65_B 80 SCKALGPEP--VLLFAN-RIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS----NV 150 (386)
T ss_dssp CEEECSSCC--EEEEEC-BSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----CE
T ss_pred eECCccccc--eeEeec-CccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC----Cc
Confidence 344444432 444433 3678999988766554443 334578999997555 5555556778888877654 22
Q ss_pred eEecccCCCCCeEEEEecCCCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeeccccc
Q 005656 85 LRFRSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 163 (685)
Q Consensus 85 ~~~~~~h~~~v~~i~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (685)
..........+..+++.+.+..|+.+ ...+.|.+.++........+.
T Consensus 151 ~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-------------------------------- 198 (386)
T 3v65_B 151 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-------------------------------- 198 (386)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC--------------------------------
T ss_pred EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec--------------------------------
Confidence 22222233456788888765555444 445666665543221111000
Q ss_pred ccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-C-CcEEEEECCCCccccccc
Q 005656 164 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-G-GWIERFNLQSGISRGSYL 241 (685)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d-g~i~~~d~~~~~~~~~~~ 241 (685)
........+++.|.+..++.... . +.|+.+++..........
T Consensus 199 ------------------------------------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~ 242 (386)
T 3v65_B 199 ------------------------------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD 242 (386)
T ss_dssp ------------------------------------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred ------------------------------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence 12345688999987776666543 3 689999886543322211
Q ss_pred cccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 242 DMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 242 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
..-....+++++|++..|+.+. ..+.|..+|+........+.. ......+++ ..+.++++-...+.|..
T Consensus 243 --------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 243 --------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 313 (386)
T ss_dssp --------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred --------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence 2234578999998776666554 567899999875443333322 234566777 44556666667788999
Q ss_pred EEcCCCeeEEEEecCCCCeEEEEE
Q 005656 320 FDVVALRMVRKFEGHTDRITDFCF 343 (685)
Q Consensus 320 ~d~~~~~~~~~~~~h~~~I~~l~~ 343 (685)
+|..+++.+..+........++++
T Consensus 314 ~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 314 ANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTCCSCEEEECSCSCCCCEEE
T ss_pred EECCCCcceEEEccCCCCCceEEE
Confidence 987777777766654444555554
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.57 E-value=0.00028 Score=70.38 Aligned_cols=238 Identities=13% Similarity=0.016 Sum_probs=142.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 95 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v 95 (685)
+|+.+. ...|+..|+.+......+. ....+.+++|.+.+. +.++-..++.|..++.+...............-..+
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 344433 3569999999877665553 345678999998655 555555678888888765210001111222223456
Q ss_pred eEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656 96 LCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 174 (685)
Q Consensus 96 ~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (685)
..+++.+.+..|+ +-...+.|.+++.........+.
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~------------------------------------------- 116 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR------------------------------------------- 116 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-------------------------------------------
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-------------------------------------------
Confidence 8899987555554 44556788887764322111100
Q ss_pred cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecC--CcEEEEECCCCccccccccccccccCCCC
Q 005656 175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHN 252 (685)
Q Consensus 175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--g~i~~~d~~~~~~~~~~~~~~~~~~~~h~ 252 (685)
........+++.|.+..++..... +.|..+++.... ...+.. ..-
T Consensus 117 -------------------------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~-------~~~ 163 (316)
T 1ijq_A 117 -------------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT-------ENI 163 (316)
T ss_dssp -------------------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC-------SSC
T ss_pred -------------------------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEE-------CCC
Confidence 112356789999877766665543 689988885432 222210 223
Q ss_pred cCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeec---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE
Q 005656 253 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV 328 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~ 328 (685)
....++++++++..|+.+. ..+.|..+|+........... ......+++. .+.++++-...+.|..+|..+++.+
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 4678999999877776665 567899999975433322222 1345667774 4556666667789999998888766
Q ss_pred EEEecC
Q 005656 329 RKFEGH 334 (685)
Q Consensus 329 ~~~~~h 334 (685)
..+...
T Consensus 243 ~~i~~~ 248 (316)
T 1ijq_A 243 NLLAEN 248 (316)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 666533
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.56 E-value=9.9e-05 Score=70.20 Aligned_cols=213 Identities=11% Similarity=0.127 Sum_probs=131.8
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
+.+..++|+|++..+.++...++.|...|.. ++.+..+..+-....-.+++.+++.++++.-.++.+.+++++.... .
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-i 104 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE-V 104 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-E
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-e
Confidence 4689999999876577778889999999998 8877777533335678899999998877776778898888876532 1
Q ss_pred ceeEec------ccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecC---ceeeEechhhHHHHHhhccccccccccCc
Q 005656 83 RLLRFR------SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD---QQSRELSQRHVAKRARKLKMKEEELKLKP 153 (685)
Q Consensus 83 ~~~~~~------~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (685)
..+... .........++|.|.++.|+++.......+|.+..- ...........
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~------------------ 166 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL------------------ 166 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH------------------
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh------------------
Confidence 111111 123455789999999888888777666777776510 00000000000
Q ss_pred eeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECC
Q 005656 154 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQ 232 (685)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~~~d~~ 232 (685)
.. ......+.+++++|.. ++++....+..+..+|.+
T Consensus 167 -----------------------------------------~~--~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 167 -----------------------------------------QR--QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp -----------------------------------------HH--TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred -----------------------------------------cc--ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC
Confidence 00 0112346788888854 555666667788888876
Q ss_pred CCcccccccccc-ccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 005656 233 SGISRGSYLDMS-ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 280 (685)
Q Consensus 233 ~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 280 (685)
.. .+..+.-.. ......--..--+|+++++|+..++ +..+.++.+.
T Consensus 204 g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 204 GE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp CC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred CC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 44 333332100 0000011236789999999985554 6666666554
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.55 E-value=2.7e-05 Score=74.15 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=132.3
Q ss_pred CCCCCCeEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE
Q 005656 199 PENPTAVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 277 (685)
Q Consensus 199 ~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~ 277 (685)
++....+..++++|+++.+ ++...++.|..+|.+ +.....+.- .-....-+|++.+++.++++.-.++.+.
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------~g~~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------DFVKDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-------SSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-------CCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence 3555679999999977655 557788999999998 766655421 2235678899998888777766778899
Q ss_pred EEECCCCce---EEEee-------cCCceeEEEEeecCCEEEEEeCCCeEEEEEcC---CCeeEEEEe-------cCCCC
Q 005656 278 VWDFKGRDL---KSRWE-------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVV---ALRMVRKFE-------GHTDR 337 (685)
Q Consensus 278 iwd~~~~~~---~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~---~~~~~~~~~-------~h~~~ 337 (685)
++++..... ..... .......++|+|.++.|+++.......+|.+. ....+..+. .+...
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 998765432 22222 12446899999999877777765555555543 111122221 13346
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeEEeecc----------ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 338 ITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDV----------SITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 338 I~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~----------~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+.++++.|.. ++++....++.|.++|.. |+.+..+.... ..-.|+|.++|+ |+.++ ..|.++.+.
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs-E~n~~y~f~ 250 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS-EPNRFYRFT 250 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE-TTTEEEEEE
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc-CCceEEEEE
Confidence 7899999954 556666677889999955 66777665442 378999999998 44445 446777775
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.52 E-value=1e-05 Score=91.24 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=69.7
Q ss_pred cEEEEEEc-cCCCCEEEE-EeCCC----cEEEEeCCCC-eeeEE-eecccccCeeEEEEeCCCcEEEEecCC-----CcE
Q 005656 4 AVTALAFS-SDGQPLLAS-GASSG----VISIWNLEKR-RLQSV-IREAHDNAIISLHFFANEPVLMSASAD-----NSI 70 (685)
Q Consensus 4 ~V~~l~fs-pdg~~~lat-g~~dg----~I~vwd~~~~-~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~s~D-----~~v 70 (685)
.+.+.+|| |||+ +||- .+.+| .|+++|+.++ +.+.. +. ....+++|+|||+.|+....| ..|
T Consensus 175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 47789999 9999 5554 33333 4999999998 63321 21 224578999999877776654 245
Q ss_pred EEEEecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCC---CceEEEEeec
Q 005656 71 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQ 123 (685)
Q Consensus 71 ~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---g~i~vwd~~~ 123 (685)
.++++.++......+... .+......+.|+|||++|+..+.+ ..|.++|+.+
T Consensus 250 ~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEEETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEEECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 556554432111222221 222345678999999988876533 2455555543
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.51 E-value=0.00018 Score=72.17 Aligned_cols=272 Identities=10% Similarity=0.046 Sum_probs=148.2
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec---ccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE---AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 79 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~ 79 (685)
..+.+|.|.+++. .+|+| ..|.| +...+.++.-..+.. .....+.++.|.+ +..++ ++.++.| +.-..+.
T Consensus 36 ~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i--~~S~DgG 108 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIM--LHTTDGG 108 (327)
T ss_dssp SCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEE--EEESSTT
T ss_pred CcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeE--EEECCCC
Confidence 4688999988777 67755 46655 344444432222210 1245688999986 44444 4455644 3323322
Q ss_pred CCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeec-CceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 80 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ-DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
...+.+.....+...+..+.+.+++..++.+ .+|.| |.... ++.-....
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~~~--------------------------- 158 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQALV--------------------------- 158 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEEEE---------------------------
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEEee---------------------------
Confidence 3333332221233456778877776555444 45543 22221 21111100
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 238 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~ 238 (685)
......+..+++.+++.+++++.. |.++.-+-..+..-.
T Consensus 159 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 159 ----------------------------------------QEAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEPGQTAWE 197 (327)
T ss_dssp ----------------------------------------CSCCCCEEEEEECTTSCEEEEETT-SSEEEEECTTCSSCE
T ss_pred ----------------------------------------cCCCcceEEEEEcCCCcEEEEECC-CcEEEEeCCCCCcee
Confidence 022345788899998888777654 444443211122111
Q ss_pred ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-----CCceeEEEEeecCCEEEEEeC
Q 005656 239 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-----GCSLVKIVYHRVNGLLATVAD 313 (685)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~ 313 (685)
... ......+..+.++++++.+ .++.+|.+++.+...++.-..+.. ...+..+.+.+++.+++++.
T Consensus 198 ~~~-------~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~- 268 (327)
T 2xbg_A 198 PHN-------RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG- 268 (327)
T ss_dssp EEE-------CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-
T ss_pred ECC-------CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-
Confidence 111 1345678899999988755 455678887775333332222221 23578888888777766655
Q ss_pred CCeEEEEEcCCCeeEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005656 314 DLVIRLFDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWD 363 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~~~~---h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd 363 (685)
++.| .+..+.++.-..+.. +...+.++.|.++++ +++++.+|.|.-++
T Consensus 269 ~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 269 AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 6666 344555554444432 345688899976554 66667789777665
No 277
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.50 E-value=0.0021 Score=70.23 Aligned_cols=382 Identities=11% Similarity=-0.026 Sum_probs=190.0
Q ss_pred EEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEe-cCCCcEEEEEecCCCCCCc
Q 005656 6 TALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPR 83 (685)
Q Consensus 6 ~~l~fspdg~~~latg~-~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~D~~v~iWd~~~~~~~~~ 83 (685)
..|++.|.+..++.|-. ..+.|...+++......... ..-.....|++.+++..|+.+ +..+.|...+++... .+
T Consensus 130 ~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~--~~ 206 (619)
T 3s94_A 130 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN--RQ 206 (619)
T ss_dssp CCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE--EC
T ss_pred ceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc--cE
Confidence 46778776442444431 24567666765443333332 234567899999976655544 445667666665421 11
Q ss_pred eeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhh----------HHHHHhh---cc---cccc
Q 005656 84 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH----------VAKRARK---LK---MKEE 147 (685)
Q Consensus 84 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----------~~~~~~~---~~---~~~~ 147 (685)
. ...+....+..+++..+ ..+++-...+.|...|..+++....+.... ...+... .. ....
T Consensus 207 ~--~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs 283 (619)
T 3s94_A 207 A--VVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCS 283 (619)
T ss_dssp -----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCS
T ss_pred E--EEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCccc
Confidence 1 11222334467777655 334444456788888887776544432110 0000000 00 0000
Q ss_pred cccc--C---ceeeeecccccc-cC------CcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCC
Q 005656 148 ELKL--K---PVIAFDCAEIRE-RD------WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 215 (685)
Q Consensus 148 ~~~~--~---~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 215 (685)
.+.+ + ...+..+..... .+ ...-+..-.....++..++.........+ +. ..-..+.++++.+.++
T Consensus 284 ~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~-~~-~~l~~~~~ld~d~~~~ 361 (619)
T 3s94_A 284 HLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVL-QL-EDIRHAIAIDYDPVEG 361 (619)
T ss_dssp SEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEEC-CC-SCCSSEEEEEEETTTT
T ss_pred ceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEE-ec-cccCccEEEEEEcCCC
Confidence 0000 0 000000011100 00 00111111122344444444322211111 11 2234578899998666
Q ss_pred EEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeEEEEECCCCceEEEeec-
Q 005656 216 FAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWDFKGRDLKSRWEV- 292 (685)
Q Consensus 216 ~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~- 292 (685)
.++... ..+.|+.+++.......... ..-....+++++..+..|+ +-+..+.|.+.++...........
T Consensus 362 ~ly~sD~~~~~I~r~~~~g~~~~~v~~--------~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~ 433 (619)
T 3s94_A 362 YIYWTDDEVRAIRRSFIDGSGSQFVVT--------AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISED 433 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT
T ss_pred eEEEEeCCCCeEEEEEcCCCccEEEEE--------CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECC
Confidence 666554 57889999987643322211 2234567899997555454 445678899999876543222222
Q ss_pred CCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCce
Q 005656 293 GCSLVKIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQ 369 (685)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~ 369 (685)
-.....+++.|....|+.+.. .+.|...+++...........-...+.+++++++..|..+. ..+.|..+++.....
T Consensus 434 l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~ 513 (619)
T 3s94_A 434 LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 513 (619)
T ss_dssp CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce
Confidence 256789999997665555543 36777777764333222333456789999999777777665 456788888764433
Q ss_pred eeEEeec-cceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 370 IDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 370 i~~~~~~-~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
...+... ....+++.. +.+|+.+......|+.-+
T Consensus 514 ~~~~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~~ 548 (619)
T 3s94_A 514 RVLVEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVH 548 (619)
T ss_dssp EEEEECCCCSSCCEEEE--TTEEEEECTTSSCEEEEE
T ss_pred EEEeccCCCCcEEEEEE--CCEEEEeecCCCeEEEEE
Confidence 2222211 113344443 235655544443454443
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.49 E-value=0.00037 Score=71.93 Aligned_cols=248 Identities=12% Similarity=-0.013 Sum_probs=150.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcE-EEEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 95 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v 95 (685)
+|+.+. ...|+..++........+. ....+..++|.+.+.. .++-...+.|..++++..................+
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444443 4679999998776554443 4567899999986554 45545567888887765321011222222234567
Q ss_pred eEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656 96 LCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 174 (685)
Q Consensus 96 ~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (685)
..+++.+.+..|+ +-...+.|.+.++........+.
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~------------------------------------------- 198 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR------------------------------------------- 198 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-------------------------------------------
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-------------------------------------------
Confidence 8889987544444 44456677777654332111110
Q ss_pred cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCCC
Q 005656 175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHN 252 (685)
Q Consensus 175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~ 252 (685)
........+++.|.+.+++.... .+.|...++.......... ..-
T Consensus 199 -------------------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~--------~~l 245 (400)
T 3p5b_L 199 -------------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--------ENI 245 (400)
T ss_dssp -------------------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC--------SSC
T ss_pred -------------------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE--------CCC
Confidence 12344678999997777766653 3789999987543322211 223
Q ss_pred cCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE
Q 005656 253 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV 328 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~ 328 (685)
....+|++++++..|+.+. ..+.|..+|+............ .....+++ ..+.++++-...+.|..+|..+++.+
T Consensus 246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCce
Confidence 5678999998877777665 5678999998765443333321 33445666 33455566666788999998888777
Q ss_pred EEEecCCCCeEEEEEc
Q 005656 329 RKFEGHTDRITDFCFS 344 (685)
Q Consensus 329 ~~~~~h~~~I~~l~~s 344 (685)
..+........++...
T Consensus 325 ~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 325 NLLAENLLSPEDMVLF 340 (400)
T ss_dssp EEEECSCSCEEEEEEE
T ss_pred EEEecCCCCCceEEEE
Confidence 7776555556666553
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.48 E-value=7.3e-05 Score=78.07 Aligned_cols=195 Identities=13% Similarity=0.065 Sum_probs=115.5
Q ss_pred CCCeEEEEEccCCCEEEEEecCC-----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCe
Q 005656 202 PTAVKACTISACGNFAVLGTAGG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGD 275 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~ 275 (685)
......++++++|+ +++....+ .+..++...+....... ..-....+++++| ++.++++-..++.
T Consensus 181 ~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--------~~~~~P~giavd~~~G~lyv~d~~~~~ 251 (433)
T 4hw6_A 181 IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSL--------CNARGAKTCAVHPQNGKIYYTRYHHAM 251 (433)
T ss_dssp CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEE--------EECSSBCCCEECTTTCCEEECBTTCSE
T ss_pred CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccc--------cccCCCCEEEEeCCCCeEEEEECCCCE
Confidence 34578999999999 55554422 23333332211100000 1223456788999 6665555556788
Q ss_pred EEEEECCCCceEEEe-ecC--CceeEEEEeecCCEEEEE-eCCCeEEEEEcC--CCee--EEEEecC-------------
Q 005656 276 IKVWDFKGRDLKSRW-EVG--CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV--ALRM--VRKFEGH------------- 334 (685)
Q Consensus 276 i~iwd~~~~~~~~~~-~~~--~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~--~~~~--~~~~~~h------------- 334 (685)
|+.+|..++.....+ ... .....++++|+++.|+++ ...+.|+.++.. ++.. ...+.+.
T Consensus 252 V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~ 331 (433)
T 4hw6_A 252 ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTG 331 (433)
T ss_dssp EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGG
T ss_pred EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccc
Confidence 999999877662222 222 223469999999955554 456899998865 3321 1223222
Q ss_pred --CCCeEEEEE---------cCCCCEEEEEeCCCcEEEEEcCCCceeeEEeec------------------cceEEEEEc
Q 005656 335 --TDRITDFCF---------SEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD------------------VSITALSLS 385 (685)
Q Consensus 335 --~~~I~~l~~---------spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~------------------~~v~~v~~s 385 (685)
-.....+++ .++|++.++-...+.|+.++ .+|......... .....++++
T Consensus 332 a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~-~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd 410 (433)
T 4hw6_A 332 ARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT-PEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYD 410 (433)
T ss_dssp SBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC-TTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEE
T ss_pred eEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC-CCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEE
Confidence 124677999 77777777767778899998 456443322110 127889999
Q ss_pred CCCCeEEEEEeCCCeEEEEEc
Q 005656 386 PNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 386 pdg~~Lat~~~d~~~I~lW~~ 406 (685)
|....|+++....+.|+.++.
T Consensus 411 ~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 411 MKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TTTTEEEEEEGGGTEEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEec
Confidence 544455555555457887753
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.45 E-value=0.00052 Score=68.35 Aligned_cols=194 Identities=14% Similarity=0.048 Sum_probs=121.0
Q ss_pred CCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCC---ccccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeE
Q 005656 202 PTAVKACTISACGNFAVLG-TAGGWIERFNLQSG---ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDI 276 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~---~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i 276 (685)
...+..++|++.++.++.. ..++.|+.+++... .....+.. ..-....++++++.+..|+ +-...+.|
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~-------~~~~~p~glavd~~~~~ly~~d~~~~~I 101 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------RDIQAPDGLAVDWIHSNIYWTDSVLGTV 101 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-------SSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe-------CCCCCcCEEEEeecCCeEEEEECCCCEE
Confidence 3457889999876655554 45689999998762 22111110 1223457899987655554 44567899
Q ss_pred EEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCC--CeEEEEEcCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEE
Q 005656 277 KVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLS 352 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d--g~I~i~d~~~~~~~~~~-~~h~~~I~~l~~spdg~~l~s 352 (685)
.+++............ ......++++|.+..|+.+... +.|..+++.. .....+ ...-...+.++++|++..|+.
T Consensus 102 ~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred EEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEE
Confidence 9999886544433332 2567899999977766555543 6888888764 333333 233456889999998777765
Q ss_pred Ee-CCCcEEEEEcCCCceeeEE-eec---cceEEEEEcCCCCeEEEEEeCCCeEEEEEc
Q 005656 353 SG-MDGSLRIWDVILARQIDAI-HVD---VSITALSLSPNMDVLATAHVDQNGVYLWVN 406 (685)
Q Consensus 353 ~s-~Dg~I~iwd~~~~~~i~~~-~~~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~~ 406 (685)
+. ..+.|..+|+... ....+ ... .....+++. +..|+.+....+.|..++.
T Consensus 181 ~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeC
Confidence 54 5678999998743 33333 221 236777774 3566666555567887763
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.42 E-value=0.00028 Score=70.30 Aligned_cols=245 Identities=10% Similarity=0.023 Sum_probs=144.6
Q ss_pred EEEEEeCCCcEEEEeCCCCee-eEEeecccccCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecccCCCC
Q 005656 17 LLASGASSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 94 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~ 94 (685)
+|+.+. ...|+.+|+..... ...+. .....+..++|.+.+. +.++-...+.|..++.+........+ ...-..
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~---~~~l~~ 80 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---VSGLLS 80 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE---EECCSC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE---cCCCCC
Confidence 444433 46799999987641 21221 2334577999998644 55555667788888776542111111 122345
Q ss_pred CeEEEEecCCCEEE-EEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEE
Q 005656 95 PLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 173 (685)
Q Consensus 95 v~~i~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (685)
+..+++.+.+..|+ +-...+.|.++++..........
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~------------------------------------------ 118 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW------------------------------------------ 118 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------------------------------------
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe------------------------------------------
Confidence 67889987544444 44456678777764322111100
Q ss_pred EcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCC
Q 005656 174 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAH 251 (685)
Q Consensus 174 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h 251 (685)
........+++.|.+.+++.... .+.|..+++..... ..+.. ..
T Consensus 119 --------------------------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~-------~~ 164 (318)
T 3sov_A 119 --------------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIIN-------SE 164 (318)
T ss_dssp --------------------------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEEC-------SS
T ss_pred --------------------------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEEE-------CC
Confidence 12345678899987777766653 57899998864332 22210 12
Q ss_pred CcCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEee-cCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEE
Q 005656 252 NGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 329 (685)
Q Consensus 252 ~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~ 329 (685)
-....++++++++..|+.+. ..+.|..+|+.......... .......+++. .+.++++-...+.|..++..+++..+
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceE
Confidence 24568999999777666654 56789999987543332222 12445566664 34555666667899999988887666
Q ss_pred EEecCCCCeEEEEE
Q 005656 330 KFEGHTDRITDFCF 343 (685)
Q Consensus 330 ~~~~h~~~I~~l~~ 343 (685)
.+......+.+++.
T Consensus 244 ~i~~~~~~P~~i~v 257 (318)
T 3sov_A 244 EIHSDIFSPMDIHA 257 (318)
T ss_dssp EEECCCSSCCCEEE
T ss_pred EEeCCCCCCcEEEE
Confidence 66544334444443
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.42 E-value=0.00032 Score=71.03 Aligned_cols=162 Identities=7% Similarity=-0.057 Sum_probs=103.2
Q ss_pred CeEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CC-CeEEEEE
Q 005656 204 AVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YH-GDIKVWD 280 (685)
Q Consensus 204 ~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~d-g~i~iwd 280 (685)
....+++.+.+..+ ++-...+.|.++++.......... ..-....+++++|.+..|+.+. .. +.|..++
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe--------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 34577888755555 444556789999987543222211 2334578999999766665554 44 7888888
Q ss_pred CCCCceEEEeec-CCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656 281 FKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS 358 (685)
Q Consensus 281 ~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~ 358 (685)
+........... -.....++++|+++.|+.+. ..+.|..+|+........+.........+++. .+...++-...+.
T Consensus 189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~ 267 (349)
T 3v64_C 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS 267 (349)
T ss_dssp TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence 875443332222 24578899998777666554 46789999987543333333445567788883 4444555556778
Q ss_pred EEEEEcCCCceeeEEe
Q 005656 359 LRIWDVILARQIDAIH 374 (685)
Q Consensus 359 I~iwd~~~~~~i~~~~ 374 (685)
|..++..+|+.+..+.
T Consensus 268 V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 268 INSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTCCSCEEEE
T ss_pred EEEEEccCCCccEEec
Confidence 8888877777666654
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.36 E-value=2.6e-05 Score=87.96 Aligned_cols=189 Identities=9% Similarity=-0.007 Sum_probs=113.9
Q ss_pred CeEEEEEc-cCCCEEEEEecC-C----cEEEEECCCC-ccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC---
Q 005656 204 AVKACTIS-ACGNFAVLGTAG-G----WIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--- 273 (685)
Q Consensus 204 ~v~~~~~s-~~g~~l~~g~~d-g----~i~~~d~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--- 273 (685)
.+...+|| |||++++.+... | .|+++|+.++ ...... -.....+++|+|+|+.|+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~----------~~~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK----------VSGTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC----------EEEECSCCEECSSTTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc----------ccCceeeEEEecCCCEEEEEEECCCC
Confidence 57889999 999998876543 3 4999999988 532110 01123468899999888877765
Q ss_pred --CeEEEEECCCCce--EEEee--cCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCC--ee-EEEEe-cCCCCeEE
Q 005656 274 --GDIKVWDFKGRDL--KSRWE--VGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVAL--RM-VRKFE-GHTDRITD 340 (685)
Q Consensus 274 --g~i~iwd~~~~~~--~~~~~--~~~~i~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~--~~-~~~~~-~h~~~I~~ 340 (685)
..|+++++.++.. ...+. .......+.|+|||++|+..+. ...|+++|+.++ +. ++.+. +..+....
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 3688889887642 22222 2234567899999998877663 447889999875 33 13333 34445555
Q ss_pred EEEcCCCCEEE-EEeCC--C--cEEEEEcCCC-ceee-EEeeccc--eEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 341 FCFSEDGKWLL-SSGMD--G--SLRIWDVILA-RQID-AIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 341 l~~spdg~~l~-s~s~D--g--~I~iwd~~~~-~~i~-~~~~~~~--v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
+.|+. |+.|+ ....+ + .|..+++.++ .... .+..... +..+.+. ++.|+.....++..+||.
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 65554 55444 44443 2 5667777653 3223 3333332 4555554 555555444433555543
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.00013 Score=76.11 Aligned_cols=152 Identities=9% Similarity=0.082 Sum_probs=91.6
Q ss_pred eEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCCeEEEEECC
Q 005656 205 VKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFK 282 (685)
Q Consensus 205 v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~ 282 (685)
...++++| +|..+++-..++.|+.|+...+....... ........+++|+|++++|+.+ ...+.|..++..
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~-------~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT-------IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE-------CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE-------cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 45678999 67766666678899999998765422111 0222456799999999955554 467889998765
Q ss_pred C--Cce--EEEeecC----------------Ccee-EEEEe--------ecCCEEEEEeCCCeEEEEEcCCCeeEEEEec
Q 005656 283 G--RDL--KSRWEVG----------------CSLV-KIVYH--------RVNGLLATVADDLVIRLFDVVALRMVRKFEG 333 (685)
Q Consensus 283 ~--~~~--~~~~~~~----------------~~i~-~~~~~--------~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~ 333 (685)
. +.. ...+... .... .++.. +++.++++-..++.|+.++ .+++... +.+
T Consensus 301 ~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~-~~g 378 (430)
T 3tc9_A 301 WKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTT-FAG 378 (430)
T ss_dssp TTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEE-EEE
T ss_pred cccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEE-EEe
Confidence 3 221 1111110 1122 34443 2345555555677899888 4564433 322
Q ss_pred C------------------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcC
Q 005656 334 H------------------TDRITDFCFSED-GKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 334 h------------------~~~I~~l~~spd-g~~l~s~s~Dg~I~iwd~~ 365 (685)
. -.....++++|+ +.++++-...+.|+.++++
T Consensus 379 ~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 379 RGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2 125789999995 5555555566778877753
No 285
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.34 E-value=0.00041 Score=71.32 Aligned_cols=162 Identities=7% Similarity=-0.057 Sum_probs=103.7
Q ss_pred eEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CC-CeEEEEEC
Q 005656 205 VKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YH-GDIKVWDF 281 (685)
Q Consensus 205 v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~d-g~i~iwd~ 281 (685)
...+++.+.+..| ++-...+.|.++++.......... ..-....+++++|.+..|+.+. .. +.|..+++
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~--------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC--------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec--------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 4567777755554 444556788888876543222211 2335678999999776666554 33 67888888
Q ss_pred CCCceEEEeecC-CceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005656 282 KGRDLKSRWEVG-CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL 359 (685)
Q Consensus 282 ~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I 359 (685)
............ .....++++|+++.|+.+. ..+.|..+|+........+.........+++. .+..+++-...+.|
T Consensus 233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 311 (386)
T 3v65_B 233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 311 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence 754433333222 4578899998777665554 56789999987544333344344567888883 44455565677889
Q ss_pred EEEEcCCCceeeEEee
Q 005656 360 RIWDVILARQIDAIHV 375 (685)
Q Consensus 360 ~iwd~~~~~~i~~~~~ 375 (685)
..++..+|+.+..+..
T Consensus 312 ~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 312 NSANKFTGKNQEIIRN 327 (386)
T ss_dssp EEEETTTCCSCEEEEC
T ss_pred EEEECCCCcceEEEcc
Confidence 9998778877766653
No 286
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.32 E-value=0.0014 Score=65.54 Aligned_cols=186 Identities=10% Similarity=0.067 Sum_probs=106.1
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEE-EEEC-
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK-VWDF- 281 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~-iwd~- 281 (685)
.+..+.+.+++..++++ .+|.|+. ....|..-.... ..+...+..+.+.+++.+++.+. +|.+. -+|-
T Consensus 123 ~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~-------~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~g 192 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALV-------QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPG 192 (327)
T ss_dssp CEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEE-------CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTT
T ss_pred CeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEee-------cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCC
Confidence 35666666666655555 4554432 222232211111 14456788999999888776654 45443 3442
Q ss_pred -CCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEe-c---CCCCeEEEEEcCCCCEEEEEeCC
Q 005656 282 -KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-G---HTDRITDFCFSEDGKWLLSSGMD 356 (685)
Q Consensus 282 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~---h~~~I~~l~~spdg~~l~s~s~D 356 (685)
.+-+.+ .......+..+.+.+++.+++ ++.+|.+++.+.+.++.-..+. . +...+.++++.+++..++++. +
T Consensus 193 G~tW~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~ 269 (327)
T 2xbg_A 193 QTAWEPH-NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-A 269 (327)
T ss_dssp CSSCEEE-ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-T
T ss_pred CCceeEC-CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-C
Confidence 122222 122346778888988887654 4567887776533344333332 1 223588999998887666654 6
Q ss_pred CcEEEEEcCCCceeeEEee----ccceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 357 GSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 357 g~I~iwd~~~~~~i~~~~~----~~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
|.| .+....|+.-..+.. +..+.++.|.+++. +++++.+| .|.-++
T Consensus 270 g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G-~i~~~~ 319 (327)
T 2xbg_A 270 GAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKG-ILLRYV 319 (327)
T ss_dssp TCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTT-EEEEEC
T ss_pred CeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCc-eEEEEc
Confidence 767 455555655444432 34578888886665 44555565 666654
No 287
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.30 E-value=0.0082 Score=65.56 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=94.4
Q ss_pred CEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeec-------CCceeEEEEeecCCEE-EEEeCCCeEEEEEcCC
Q 005656 254 EVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV-------GCSLVKIVYHRVNGLL-ATVADDLVIRLFDVVA 324 (685)
Q Consensus 254 ~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l-~~~~~dg~I~i~d~~~ 324 (685)
.+.+++|++.+..|+.+. ..+.|+.++.........+.. -..+..+++...++.| ++-+..+.|.+.++.
T Consensus 341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~- 419 (628)
T 4a0p_A 341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD- 419 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-
Confidence 456677777655555444 456677777664332222221 2357789999887654 455667899999986
Q ss_pred CeeEEEE-ecCCCCeEEEEEcC-CCCEEEEEeCCC--cEEEEEcCCCceeeEEee-c-cceEEEEEcCCCCeEEEEEeCC
Q 005656 325 LRMVRKF-EGHTDRITDFCFSE-DGKWLLSSGMDG--SLRIWDVILARQIDAIHV-D-VSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 325 ~~~~~~~-~~h~~~I~~l~~sp-dg~~l~s~s~Dg--~I~iwd~~~~~~i~~~~~-~-~~v~~v~~spdg~~Lat~~~d~ 398 (685)
|+..+.+ ........+|++.| .|.++++-.... .|...++. |.....+.. . ...+.++++++++.|+.+....
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~ 498 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGKLFWADSDL 498 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC
Confidence 4444443 34556789999999 454444433222 46666654 433333322 2 2379999999988888887665
Q ss_pred CeEEEEEcC
Q 005656 399 NGVYLWVNR 407 (685)
Q Consensus 399 ~~I~lW~~~ 407 (685)
..|...+..
T Consensus 499 ~~I~~~~~d 507 (628)
T 4a0p_A 499 RRIESSDLS 507 (628)
T ss_dssp TEEEEEETT
T ss_pred CEEEEEeCC
Confidence 578877753
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.28 E-value=0.0012 Score=68.22 Aligned_cols=195 Identities=13% Similarity=0.039 Sum_probs=123.7
Q ss_pred CCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCcc---ccccccccccccCCCCcCEEEEEEcCCCCEEE-EEECCCeE
Q 005656 202 PTAVKACTISACGNFAVLG-TAGGWIERFNLQSGIS---RGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDI 276 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g-~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i 276 (685)
...+..++|++.++.|+.. ...+.|+.+++..... ...+. ........++++++.+..|+ +-...+.|
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-------~~~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-------eCCCCCcccEEEEecCCceEEEECCCCeE
Confidence 4567899999876666555 4567899998875321 11111 02335678999998555454 44567899
Q ss_pred EEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656 277 KVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~ 353 (685)
.+.++........+.. ......++++|.+..|+.... .+.|...++............-...+.|++++++..|+.+
T Consensus 184 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp EEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence 9999887655444442 255789999997776666553 3789999887544333334344678999999988777766
Q ss_pred e-CCCcEEEEEcCCCceeeEEeec---cceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 354 G-MDGSLRIWDVILARQIDAIHVD---VSITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 354 s-~Dg~I~iwd~~~~~~i~~~~~~---~~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
. ..+.|..+|+........+... ....++++ ++..|+.+....+.|+.++
T Consensus 264 D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 264 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEE
T ss_pred ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEE
Confidence 5 5678999998654433333321 22556666 4445555555555777775
No 289
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.25 E-value=0.018 Score=67.46 Aligned_cols=340 Identities=10% Similarity=0.075 Sum_probs=182.6
Q ss_pred cEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC--
Q 005656 26 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-- 103 (685)
Q Consensus 26 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-- 103 (685)
.|++.+...+..+..........|...+.+. +.++.++ ++.+.++.++.+. ...... ..-...|.|+++.|.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~--L~~~~~-~~l~~evscl~i~~~~~ 566 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQE--LRQISH-TEMEHEVACLDITPLGD 566 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTE--EEEEEE-EECSSCEEEEECCCCSS
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCc--eeeecc-cCCCCceEEEEeecCCC
Confidence 4667776655555555533445677777553 3555554 5778888877531 111111 223567999998763
Q ss_pred ----CCEEEEEeC-CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCc
Q 005656 104 ----GRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 178 (685)
Q Consensus 104 ----~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (685)
+++++.|.. |++++++++.+.+.......+ .. ..+....+.. . .....+.++..++
T Consensus 567 ~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~------------~~--~~p~si~l~~--~---~~~~~L~igl~dG 627 (1158)
T 3ei3_A 567 SNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG------------GE--IIPRSILMTT--F---ESSHYLLCALGDG 627 (1158)
T ss_dssp STTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC------------SS--CCEEEEEEEE--E---TTEEEEEEEETTS
T ss_pred CcccccEEEEEECCCCEEEEEECCCCCeEEEEECC------------CC--CCCcEEEEEE--e---CCCcEEEEEeCCC
Confidence 468999986 999999999754433222100 00 0111111111 0 1234566777777
Q ss_pred eEEEEEcCc--cccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656 179 QAYVWRLQN--FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 256 (685)
Q Consensus 179 ~~~~w~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (685)
.+..+.+.. +.+....... -...++.-..+...|...+.++.+.-..+|.-+. .....- -.-..+.
T Consensus 628 ~l~~~~~d~~tg~l~d~r~~~--LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l~~s~---------l~~~~v~ 695 (1158)
T 3ei3_A 628 ALFYFGLNIETGLLSDRKKVT--LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH-KLVFSN---------VNLKEVN 695 (1158)
T ss_dssp EEEEEEECTTTCCEEEEEEEE--CCSSCCEEEEEESSSCEEEEEESSSCEEEEESSS-SEEEEE---------BSSSCCC
T ss_pred eEEEEEEcCCCCccccceeEE--cCCCceEEEEEeeCCceeEEEECCCCEEEEEcCC-ceEEec---------cChHHhc
Confidence 766655542 1221111111 1123444444444455555555555555554332 211110 0111222
Q ss_pred -EEEEcCC--CCEEEEEECCCeEEEEECCCC--ceEEEeecCCceeEEEEeecCCEEEEEeCC-----------------
Q 005656 257 -GVACDST--NTLMISAGYHGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATVADD----------------- 314 (685)
Q Consensus 257 -~l~~~~~--~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------- 314 (685)
...|+.. ..-++..+ ++.++|..+... -..+++..+..+..++++|+.+.++++..+
T Consensus 696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 774 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSA 774 (1158)
T ss_dssp EEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCH
T ss_pred eEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhh
Confidence 2234332 23344333 566888887543 345566677889999999988866655421
Q ss_pred --------------------------------CeEEEEEcCCCeeEEEEec-CCCCeEEEE---EcCC-CCEEEEEe---
Q 005656 315 --------------------------------LVIRLFDVVALRMVRKFEG-HTDRITDFC---FSED-GKWLLSSG--- 354 (685)
Q Consensus 315 --------------------------------g~I~i~d~~~~~~~~~~~~-h~~~I~~l~---~spd-g~~l~s~s--- 354 (685)
+.|+++|..+.+.+..+.- ....+.+++ |..+ ..+++.|.
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~ 854 (1158)
T 3ei3_A 775 STQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMV 854 (1158)
T ss_dssp HHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEEC
T ss_pred hhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeec
Confidence 2467777777776665542 233455554 3322 46888775
Q ss_pred -------CCCcEEEEEcCCCce--eeEEeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 355 -------MDGSLRIWDVILARQ--IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 355 -------~Dg~I~iwd~~~~~~--i~~~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
..|.|++|++..+++ +......++|++++-- +|+ |++|- . ..|++|+..
T Consensus 855 ~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~-Lla~i-g-~~l~vy~l~ 912 (1158)
T 3ei3_A 855 YPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK-LLASI-N-STVRLYEWT 912 (1158)
T ss_dssp CTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE-EEEEE-T-TEEEEEEEC
T ss_pred CCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE-EEEEc-C-CEEEEEECC
Confidence 347899999975433 3333456678888743 454 44443 3 389998854
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.24 E-value=0.00016 Score=75.54 Aligned_cols=153 Identities=11% Similarity=0.091 Sum_probs=94.8
Q ss_pred eEEEEEcc-CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEE-CCCeEEEEECC
Q 005656 205 VKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK 282 (685)
Q Consensus 205 v~~~~~s~-~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~ 282 (685)
...++++| +|+..++-..++.|+.++..++.....+.. .+....-..++++|++++|+.+. ..+.|+.++..
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~------~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM------MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE------CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec------cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 45678888 666666666778999999987765222211 01122335799999998655554 56789998865
Q ss_pred --CCceE--EEeecC----------------CceeEEEE---------eecCCEEEEEeCCCeEEEEEcCCCeeEEEEec
Q 005656 283 --GRDLK--SRWEVG----------------CSLVKIVY---------HRVNGLLATVADDLVIRLFDVVALRMVRKFEG 333 (685)
Q Consensus 283 --~~~~~--~~~~~~----------------~~i~~~~~---------~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~ 333 (685)
++... ..+... .....+++ .+++.++++-..++.|+.++. ++. +.++.+
T Consensus 304 ~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G 381 (433)
T 4hw6_A 304 RETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAG 381 (433)
T ss_dssp TTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEEC
T ss_pred CCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEe
Confidence 23221 111110 23566888 566666666667789999985 554 344433
Q ss_pred C------------------CCCeEEEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 005656 334 H------------------TDRITDFCFS-EDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 334 h------------------~~~I~~l~~s-pdg~~l~s~s~Dg~I~iwd~~ 365 (685)
. -.....++++ ++|.++++-...+.|+.++++
T Consensus 382 ~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 382 RGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 2 1236788998 566655555566778877653
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=0.00047 Score=72.06 Aligned_cols=195 Identities=7% Similarity=-0.010 Sum_probs=117.9
Q ss_pred CCeEEEEE-------ccCCCEEEEEecCC-------cEEEEECCC-Cccc-----cccccccccccCCCCcCEEEEEEcC
Q 005656 203 TAVKACTI-------SACGNFAVLGTAGG-------WIERFNLQS-GISR-----GSYLDMSERSNYAHNGEVVGVACDS 262 (685)
Q Consensus 203 ~~v~~~~~-------s~~g~~l~~g~~dg-------~i~~~d~~~-~~~~-----~~~~~~~~~~~~~h~~~v~~l~~~~ 262 (685)
.....++| +++|+++++....+ .|.+++... +... ..+. --....+++++|
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~---------~~~~p~giavdp 256 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA---------AYKQCNGATIHP 256 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE---------EESCCCCEEECT
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec---------cCCCceEEEEcC
Confidence 45788999 99999777776654 266776443 2221 1110 012335778899
Q ss_pred CCCE-EEEEECCCeEEEEECC-------CCce--------------EEEeecCCceeEEEEeecCCEEEEE-eCCCeEEE
Q 005656 263 TNTL-MISAGYHGDIKVWDFK-------GRDL--------------KSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRL 319 (685)
Q Consensus 263 ~~~~-l~s~s~dg~i~iwd~~-------~~~~--------------~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~I~i 319 (685)
++.. +++-..++.|..+|+. ++.. +...........++++|+|+.|+++ ...+.|+.
T Consensus 257 ~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 257 INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 5544 4455577889999987 5543 1122223456799999999965555 55778999
Q ss_pred EEcC--CCee--EEEEecC---C------------CCeE-EEEEc-------CCCCEEEEEeCCCcEEEEEcCCCceeeE
Q 005656 320 FDVV--ALRM--VRKFEGH---T------------DRIT-DFCFS-------EDGKWLLSSGMDGSLRIWDVILARQIDA 372 (685)
Q Consensus 320 ~d~~--~~~~--~~~~~~h---~------------~~I~-~l~~s-------pdg~~l~s~s~Dg~I~iwd~~~~~~i~~ 372 (685)
++.. ++.. ...+.+. . .... .++.. ++|.+.++-...+.|+.++ .+|. +.+
T Consensus 337 id~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~T 414 (496)
T 3kya_A 337 SDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VST 414 (496)
T ss_dssp EEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEE
T ss_pred EecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEE
Confidence 6654 3332 1233322 1 1244 45554 4566666666788899998 5664 444
Q ss_pred Eeec-------------------------cceEEEEEcCCCCeEEEEEeCCCeEEEEEcCC
Q 005656 373 IHVD-------------------------VSITALSLSPNMDVLATAHVDQNGVYLWVNRC 408 (685)
Q Consensus 373 ~~~~-------------------------~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~ 408 (685)
+... .....|++++++..|+++......|+.++...
T Consensus 415 iaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 415 YAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp EEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred EecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 4321 12678999997445666655555888887543
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.21 E-value=0.00043 Score=68.28 Aligned_cols=122 Identities=18% Similarity=0.307 Sum_probs=92.2
Q ss_pred cCEEEEEE--cCC-CC-EEEEEECCCeEEEEECC-------CCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656 253 GEVVGVAC--DST-NT-LMISAGYHGDIKVWDFK-------GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 253 ~~v~~l~~--~~~-~~-~l~s~s~dg~i~iwd~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
..+.++++ ++. ++ ++++...+|.+..|++. +.++++++...+.+..|...+....|+++-.+..|..|+
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~d 207 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFS 207 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEe
Confidence 45667777 774 43 67788889999999983 346788888889999999999999999999998888888
Q ss_pred cC-----CCeeEEEEe-cC-CCCeEEEEE--cCCCC-EEEEEe-CCCcEEEEEcC-CCceeeEEe
Q 005656 322 VV-----ALRMVRKFE-GH-TDRITDFCF--SEDGK-WLLSSG-MDGSLRIWDVI-LARQIDAIH 374 (685)
Q Consensus 322 ~~-----~~~~~~~~~-~h-~~~I~~l~~--spdg~-~l~s~s-~Dg~I~iwd~~-~~~~i~~~~ 374 (685)
.+ +++.+..+. ++ ...+..|++ .++++ ||++++ .++++.+||.. +.+.+..|.
T Consensus 208 a~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 208 AEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp CSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred CCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 65 456666553 22 246888888 55666 666666 67799999996 666666665
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.21 E-value=0.002 Score=72.06 Aligned_cols=246 Identities=12% Similarity=-0.005 Sum_probs=143.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCC-cEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 95 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v 95 (685)
+|+.+. ...|+..++........+. ....+..++|.+.+ .++++-...+.|+.++++..................+
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred cccccc-ccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 344333 3568888887766554443 45667899999854 4555656677888888765321111222223344567
Q ss_pred eEEEEecCCCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656 96 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 174 (685)
Q Consensus 96 ~~i~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (685)
..|++.+.++.|+.+ ...+.|.+.++........+.
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~------------------------------------------- 510 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR------------------------------------------- 510 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-------------------------------------------
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-------------------------------------------
Confidence 889998877555544 456778777765332111110
Q ss_pred cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-C-CcEEEEECCCCccccccccccccccCCCC
Q 005656 175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-G-GWIERFNLQSGISRGSYLDMSERSNYAHN 252 (685)
Q Consensus 175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d-g~i~~~d~~~~~~~~~~~~~~~~~~~~h~ 252 (685)
........|++.|.+.+|+.... . +.|.+.++........+. ..-
T Consensus 511 -------------------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~--------~~l 557 (791)
T 3m0c_C 511 -------------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--------ENI 557 (791)
T ss_dssp -------------------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC--------SSC
T ss_pred -------------------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe--------CCC
Confidence 12344788999998777766653 2 689999986543322221 233
Q ss_pred cCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeE
Q 005656 253 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV 328 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~ 328 (685)
....+|++++.+..|+.+. ..+.|...++............ .....+++. .+.++++-...+.|...|..+++.+
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcce
Confidence 5688999998777776665 4568999998765544443321 233455553 2334444445678888887777666
Q ss_pred EEEecCCCCeEEEE
Q 005656 329 RKFEGHTDRITDFC 342 (685)
Q Consensus 329 ~~~~~h~~~I~~l~ 342 (685)
..+........+|+
T Consensus 637 ~~l~~~l~~P~~i~ 650 (791)
T 3m0c_C 637 NLLAENLLSPEDMV 650 (791)
T ss_dssp EEEECSCSCCCCEE
T ss_pred EEeecCCCCceeEe
Confidence 66654333333443
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.20 E-value=0.013 Score=63.91 Aligned_cols=226 Identities=11% Similarity=0.003 Sum_probs=127.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEE-EEecCCCcEEEEEecCCCCCCceeEecccCCCCC
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 95 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v 95 (685)
+|+.+ ..+.|+..++++......+....-..+..++|.+.+..| ++-..++.|..++++... ...........+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~----~~~v~~~g~~~P 82 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA----LEHVVEFGLDYP 82 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSCSCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC----cEEEEeCCCCCc
Confidence 34433 457899999987654433332234568899999966554 455567888888776431 112222223457
Q ss_pred eEEEEecCCCEEEEE-eCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEE
Q 005656 96 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 174 (685)
Q Consensus 96 ~~i~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (685)
..+++.+.+..|+.+ ...+.|.+.++..... ..+.
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~------------------------------------------- 118 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLV------------------------------------------- 118 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEE-------------------------------------------
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEE-------------------------------------------
Confidence 889998765555544 3456777776643221 1110
Q ss_pred cCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCCC
Q 005656 175 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHN 252 (685)
Q Consensus 175 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~ 252 (685)
. ........+++.|...+++.... .+.|...++......... ..-
T Consensus 119 ---------------------~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~---------~~~ 165 (628)
T 4a0p_A 119 ---------------------W---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV---------PNV 165 (628)
T ss_dssp ---------------------C---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---------CSC
T ss_pred ---------------------e---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE---------CCC
Confidence 0 11234678889886666666552 567888887654432221 233
Q ss_pred cCEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 005656 253 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 325 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~ 325 (685)
....++++++++..|+.+. ..+.|..+|+.................+++.. +.++++-...+.|...|..++
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 4678899998776666664 55788888887543321111122334555543 333333334556666554433
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.19 E-value=0.00062 Score=67.18 Aligned_cols=196 Identities=10% Similarity=0.191 Sum_probs=122.6
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCC----Cc---E-EEEecC--CCcEEEEEecCCCCCCceeE
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN----EP---V-LMSASA--DNSIKMWIFDTTDGDPRLLR 86 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~----~~---~-l~s~s~--D~~v~iWd~~~~~~~~~~~~ 86 (685)
+++.....+-+.+||+ +|+.+..+. . +.++.+..-|+ |+ + +++.-. +++|++|+++..... +.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~-~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---l~ 114 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYN-T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---LQ 114 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEEC-C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---EE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEcc-C--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---ee
Confidence 5555556778999999 788887775 2 56777777663 22 2 333334 589999998654332 33
Q ss_pred eccc------CC-CCCeEEEE--ecC-CC-EEEEEeCCCceEEEEeecCc---eeeEechhhHHHHHhhccccccccccC
Q 005656 87 FRSG------HS-APPLCIRF--YAN-GR-HILSAGQDRAFRLFSVIQDQ---QSRELSQRHVAKRARKLKMKEEELKLK 152 (685)
Q Consensus 87 ~~~~------h~-~~v~~i~~--~~~-~~-~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (685)
.... .. ..+..+++ +|. ++ ++++...+|.+..|++.... ....+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~l---------------------- 172 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKK---------------------- 172 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEE----------------------
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceE----------------------
Confidence 3311 11 56677888 554 43 68888889999999985321 11110
Q ss_pred ceeeeecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 005656 153 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 232 (685)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~ 232 (685)
++.+ ...+.+..|.+.+....|+++-.+.-|..|+..
T Consensus 173 ---------------------------VR~f----------------~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 173 ---------------------------VRAF----------------KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp ---------------------------EEEE----------------ECSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred ---------------------------EEEe----------------cCCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 0111 123467889999999999999999878888855
Q ss_pred C-----CccccccccccccccCCC-CcCEEEEEE--cCCCC-EEEEEE-CCCeEEEEECC-CCceEEEee
Q 005656 233 S-----GISRGSYLDMSERSNYAH-NGEVVGVAC--DSTNT-LMISAG-YHGDIKVWDFK-GRDLKSRWE 291 (685)
Q Consensus 233 ~-----~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~~-~l~s~s-~dg~i~iwd~~-~~~~~~~~~ 291 (685)
. +..+..+. .++ ...+.++++ .++++ +|++++ .+.++.+||.. +.+.+..+.
T Consensus 210 p~~~~~~~~v~~~~-------~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 210 PDGGSNGTVIDRAD-------GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TTSCSCCEEEEEBS-------SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred cCCCCCceEEEEec-------CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 2 22222221 122 236888887 44555 566655 67799999986 555555554
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.12 E-value=0.0011 Score=65.91 Aligned_cols=163 Identities=10% Similarity=-0.002 Sum_probs=103.9
Q ss_pred CeEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC--CCeEEEEE
Q 005656 204 AVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY--HGDIKVWD 280 (685)
Q Consensus 204 ~v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd 280 (685)
....+++.+.+..+ ++-...+.|.++++.......... .......+++++|.+..|+.+.. .+.|...+
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW--------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe--------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 34577888754444 455567889999987543222111 23345789999997666666553 57888888
Q ss_pred CCCCceEEEeecC-CceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656 281 FKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS 358 (685)
Q Consensus 281 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~ 358 (685)
+............ .....++++++++.|+.+. ..+.|..+|+..........+.......+++.. +..+++-...+.
T Consensus 152 ~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~ 230 (318)
T 3sov_A 152 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS 230 (318)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTE
T ss_pred cCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCe
Confidence 8754333222222 4568899999777666554 567999999875332222333445677888853 344455556788
Q ss_pred EEEEEcCCCceeeEEee
Q 005656 359 LRIWDVILARQIDAIHV 375 (685)
Q Consensus 359 I~iwd~~~~~~i~~~~~ 375 (685)
|..++..+|+....+..
T Consensus 231 V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 231 ILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEEETTTCCSCEEEEC
T ss_pred EEEEECCCCCceEEEeC
Confidence 99999888887666543
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.07 E-value=0.0015 Score=66.00 Aligned_cols=191 Identities=11% Similarity=0.043 Sum_probs=101.9
Q ss_pred CCCeEEEEEccC---CCEEEEEecC------CcEEEEECCCCccc--ccccc-ccccccCCCCcCEEEEEEcCCCCEEEE
Q 005656 202 PTAVKACTISAC---GNFAVLGTAG------GWIERFNLQSGISR--GSYLD-MSERSNYAHNGEVVGVACDSTNTLMIS 269 (685)
Q Consensus 202 ~~~v~~~~~s~~---g~~l~~g~~d------g~i~~~d~~~~~~~--~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s 269 (685)
......++++|+ +..+++.... +.|..|+...+... ..+.. .+......|. ...++|+|+|.+.++
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVT 151 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEE
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEE
Confidence 356788999998 6666665542 67888887754211 11100 0000011233 358999999976666
Q ss_pred EEC-------------CCeEEEEECCCC------------ceEEEee-cCCceeEEEEee-cCCEEEEEeCCCeE-----
Q 005656 270 AGY-------------HGDIKVWDFKGR------------DLKSRWE-VGCSLVKIVYHR-VNGLLATVADDLVI----- 317 (685)
Q Consensus 270 ~s~-------------dg~i~iwd~~~~------------~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~I----- 317 (685)
.+. .|.|.-++.... .....+. .......++|+| ++.++++-.....+
T Consensus 152 ~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~ 231 (352)
T 2ism_A 152 TGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGH 231 (352)
T ss_dssp CCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CC
T ss_pred ECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCC
Confidence 432 145666665431 0111111 124467789999 55655444333321
Q ss_pred -EEEEcCCCe------------------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce-------ee
Q 005656 318 -RLFDVVALR------------------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ-------ID 371 (685)
Q Consensus 318 -~i~d~~~~~------------------~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~-------i~ 371 (685)
.|.-+..+. ++..+ .+......++| .+|.++++.-..+.|...++..... ..
T Consensus 232 dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~ 309 (352)
T 2ism_A 232 DEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVET 309 (352)
T ss_dssp CEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhe
Confidence 122222221 22233 22334677888 4676666665667788777764431 11
Q ss_pred EEeeccceEEEEEcCCCCeEEEEEe
Q 005656 372 AIHVDVSITALSLSPNMDVLATAHV 396 (685)
Q Consensus 372 ~~~~~~~v~~v~~spdg~~Lat~~~ 396 (685)
.+.....+..+++.|||.+.++...
T Consensus 310 ~~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 310 ALSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp EEESSCCEEEEEECTTSCEEEEECS
T ss_pred ecccCCCeeEEEECCCCcEEEEEeC
Confidence 2222345899999999977666643
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.07 E-value=0.00095 Score=65.26 Aligned_cols=200 Identities=12% Similarity=0.092 Sum_probs=127.2
Q ss_pred CCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEE---cCCCCEEEEEEC------
Q 005656 203 TAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC---DSTNTLMISAGY------ 272 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~~~l~s~s~------ 272 (685)
....++.|.+....+++++ ..|.|..|+...+........ ...........+.++.| +|+++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~-~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID-GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT-TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC-CccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3445778988666666666 789999999976643322110 00000011224689999 688777775432
Q ss_pred -------CCeEEEEECC---CCceEEEeecC--------------CceeEEEEeecCCEEEEEeCC-CeEEEEEcCCCee
Q 005656 273 -------HGDIKVWDFK---GRDLKSRWEVG--------------CSLVKIVYHRVNGLLATVADD-LVIRLFDVVALRM 327 (685)
Q Consensus 273 -------dg~i~iwd~~---~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~d-g~I~i~d~~~~~~ 327 (685)
+..|..||+. +++.+...... .....++..++|+..++++.. +.|..++.... .
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence 6789999999 77776655432 247899999999999988888 88888887644 3
Q ss_pred EEEEe-c-----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee-------c-cceEEE-EEcCCCCeEE
Q 005656 328 VRKFE-G-----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-------D-VSITAL-SLSPNMDVLA 392 (685)
Q Consensus 328 ~~~~~-~-----h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~-------~-~~v~~v-~~spdg~~La 392 (685)
+..+. . .....+.|+++|||+.|++....|.+..+|+.+.... .+.. . .....+ .--.+|+.|+
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEEE
Confidence 33322 1 1123679999999999988877999999998843220 1211 1 113443 3335788756
Q ss_pred EEEeCCCeEEEEE
Q 005656 393 TAHVDQNGVYLWV 405 (685)
Q Consensus 393 t~~~d~~~I~lW~ 405 (685)
++..-.+.+.+.+
T Consensus 250 V~~~~~~~~~l~S 262 (334)
T 2p9w_A 250 VGARAPYAISFRS 262 (334)
T ss_dssp EEEETTEEEEEEC
T ss_pred EEcCCCCEEEEEC
Confidence 5554432444443
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.0046 Score=64.63 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=70.0
Q ss_pred EEEEEEccC-CCCEEEEEeCCCcEEEEeCCCCeeeEEeecc--cccCeeEEEE-------eCCCcEEEEecCCC-----c
Q 005656 5 VTALAFSSD-GQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHF-------FANEPVLMSASADN-----S 69 (685)
Q Consensus 5 V~~l~fspd-g~~~latg~~dg~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~-------sp~~~~l~s~s~D~-----~ 69 (685)
-..|+|+|. +..++++-...+.|++.|++++........+ .......++| ++++..|+.+...+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 468999983 4436665555577999999998877665422 1235899999 99999666655443 2
Q ss_pred EEEEEecCCC-CCCc--e-eEecccCCCCCeEEEEecCCCEEE-EEeCCCceEEEEee
Q 005656 70 IKMWIFDTTD-GDPR--L-LRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVI 122 (685)
Q Consensus 70 v~iWd~~~~~-~~~~--~-~~~~~~h~~~v~~i~~~~~~~~l~-s~s~dg~i~vwd~~ 122 (685)
..++-++... +... . ...+.. -..+..++++|++..|+ +-..++.|..+|+.
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred ceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 2333332211 1221 0 011111 12456788999654544 55567778888875
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.97 E-value=5e-05 Score=84.46 Aligned_cols=243 Identities=11% Similarity=0.001 Sum_probs=135.6
Q ss_pred CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEe-cCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEec
Q 005656 24 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 102 (685)
Q Consensus 24 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 102 (685)
.+.|+..++.+......+. ....+..++|.+.+..|+.+ ...+.|+.++++..................+..|++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 4678888888776655443 23456789999876655554 45678988887651100011111111223456788875
Q ss_pred CCCEE-EEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEE
Q 005656 103 NGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 181 (685)
Q Consensus 103 ~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (685)
.+..| ++-...+.|.++++........+.
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-------------------------------------------------- 492 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------------------------------------------------- 492 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECC--------------------------------------------------
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEe--------------------------------------------------
Confidence 44444 443456778777764332111110
Q ss_pred EEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCccccccccccccccCCCCcCEEEEE
Q 005656 182 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 259 (685)
Q Consensus 182 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 259 (685)
........+++.|.+.+|++... .+.|.++++..... ..+.. ..-....+|+
T Consensus 493 ------------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~-------~~l~~PnGla 546 (699)
T 1n7d_A 493 ------------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT-------ENIQWPNGIT 546 (699)
T ss_dssp ------------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESC-------SSCSSCCCEE
T ss_pred ------------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEe-------CCCCCccEEE
Confidence 11123456778887666655543 26788887754322 11110 1123456899
Q ss_pred EcCCCCEEEEE-ECCCeEEEEECCCCceEEEeecC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCC
Q 005656 260 CDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT 335 (685)
Q Consensus 260 ~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~ 335 (685)
|++++..|+.+ +..+.|..+++........+... .....+++.. +.++++....+.|..+|..+++.+..+....
T Consensus 547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~-~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~ 625 (699)
T 1n7d_A 547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAENL 625 (699)
T ss_dssp ECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET-TEEEEECSTTTCEEEEETTTEEEEECCCTTC
T ss_pred EeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC-CEEEEEeCCCCeEEEEEccCCCceEEeecCC
Confidence 99876555544 46678999998754333333211 2234455543 3455555667899999998888877775443
Q ss_pred CCeEEEEEcC
Q 005656 336 DRITDFCFSE 345 (685)
Q Consensus 336 ~~I~~l~~sp 345 (685)
..++.|++.+
T Consensus 626 ~~P~~i~v~~ 635 (699)
T 1n7d_A 626 LSPEDMVLFH 635 (699)
T ss_dssp SSCCCCCBCS
T ss_pred CCCcEEEEeC
Confidence 3455555443
No 301
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.97 E-value=0.006 Score=68.26 Aligned_cols=195 Identities=13% Similarity=0.019 Sum_probs=123.1
Q ss_pred CCCeEEEEEccCCCEEEE-EecCCcEEEEECCCCcc---ccccccccccccCCCCcCEEEEEEcCCCCEEEEE-ECCCeE
Q 005656 202 PTAVKACTISACGNFAVL-GTAGGWIERFNLQSGIS---RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDI 276 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~-g~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i 276 (685)
...+..+++++.+..|+. -...+.|+.+++..... ...+. ........+|++++.++.|+.+ ...+.|
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-------~~~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-------ecCCCCcceeeeeecCCcEEEEecCCCeE
Confidence 456778999886555554 45567899998875321 11111 0233456789999877655554 467899
Q ss_pred EEEECCCCceEEEeecC-CceeEEEEeecCCEEEEEeC-C-CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005656 277 KVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD-D-LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 277 ~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~-d-g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~ 353 (685)
.+.++........+... .....+++.|.+..|+.+.. . +.|...++........+...-...+.|++.+.+..|+.+
T Consensus 496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwa 575 (791)
T 3m0c_C 496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 575 (791)
T ss_dssp EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEE
Confidence 99999866544444322 56789999998776666553 3 689999987554433344444678999999877777666
Q ss_pred e-CCCcEEEEEcCCCceeeEEeecc---ceEEEEEcCCCCeEEEEEeCCCeEEEEE
Q 005656 354 G-MDGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWV 405 (685)
Q Consensus 354 s-~Dg~I~iwd~~~~~~i~~~~~~~---~v~~v~~spdg~~Lat~~~d~~~I~lW~ 405 (685)
. ..+.|...++........+.... ...+|++ .+..|+.+....+.|+..+
T Consensus 576 D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 576 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEE
T ss_pred eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEe
Confidence 4 55679999986544444433221 2556666 4457777766655676665
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.86 E-value=0.0064 Score=61.37 Aligned_cols=103 Identities=20% Similarity=0.260 Sum_probs=59.4
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeee--EEee--cccccCeeEEEEeCC---CcEEEEe-cCC-----CcEE
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ--SVIR--EAHDNAIISLHFFAN---EPVLMSA-SAD-----NSIK 71 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~--~~~~--~~h~~~V~~l~~sp~---~~~l~s~-s~D-----~~v~ 71 (685)
-..|+|.|||+ ++++ ..+|.|.+++ +++.. ..+. .........++|+|+ +..|+.+ ... +.|.
T Consensus 33 P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 33 PWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp EEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred ceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 46899999998 6555 5569999998 44422 1111 012356889999998 4444433 322 5676
Q ss_pred EEEecCCCC-CC-ceeEecc---cCCCCCeEEEEecCCCEEEEEe
Q 005656 72 MWIFDTTDG-DP-RLLRFRS---GHSAPPLCIRFYANGRHILSAG 111 (685)
Q Consensus 72 iWd~~~~~~-~~-~~~~~~~---~h~~~v~~i~~~~~~~~l~s~s 111 (685)
.|+.+...- .. .++..+. +.......++|.|||...++.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 776653210 01 1222222 2122347899999996655544
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.80 E-value=0.03 Score=54.19 Aligned_cols=263 Identities=10% Similarity=0.049 Sum_probs=154.7
Q ss_pred CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC
Q 005656 24 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103 (685)
Q Consensus 24 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 103 (685)
+.+|.|.|+.++....+....- -+.-.+|..+.+|--. ..++.++|+++. ..++... ...+|..=.|-.+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~A----dsAIMnP~~~ViALra-g~~LQiFnletK----~klks~~-~~e~VvfWkWis~ 117 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMK----SKMKAHT-MTDDVTFWKWISL 117 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTT----EEEEEEE-CSSCEEEEEECSS
T ss_pred CCEEEEEECCCCCCcccccccc----ceeeeCCCccEEEEec-CCeEEEechHHh----hhhccee-cCCccEEEEecCC
Confidence 3478899998865543322122 2445689888887765 678999999887 4444432 3456777777654
Q ss_pred CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 183 (685)
Q Consensus 104 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 183 (685)
. .|+-.+ +..|.-|++........+-
T Consensus 118 ~-~L~lVT-~taVyHWs~~~~s~P~kvF---------------------------------------------------- 143 (365)
T 2xzh_A 118 N-TVALVT-DNAVYHWSMEGESQPVKMF---------------------------------------------------- 143 (365)
T ss_dssp S-EEEEEE-SSEEEEEESSTTCCCEEEE----------------------------------------------------
T ss_pred C-eEEEEc-CCcEEEEcccCCCCCceee----------------------------------------------------
Confidence 4 344433 4579999986533222111
Q ss_pred EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-------cCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656 184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 256 (685)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (685)
+.... -....|.....+++.++++..+ -.|.+.+|....+..... .+|...-.
T Consensus 144 dR~~~-----------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i---------eGhaa~F~ 203 (365)
T 2xzh_A 144 DRHSS-----------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFA 203 (365)
T ss_dssp ECCGG-----------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE---------CCSEEEEE
T ss_pred ecchh-----------cccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccccee---------eeeeeeeE
Confidence 10000 1134455666666666655432 236788998876654321 15655444
Q ss_pred EEEEcCCC---CEEEEEEC---CCeEEEEECCCC---c------eEEE-eec---CCceeEEEEeecCCEEEEEeCCCeE
Q 005656 257 GVACDSTN---TLMISAGY---HGDIKVWDFKGR---D------LKSR-WEV---GCSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 257 ~l~~~~~~---~~l~s~s~---dg~i~iwd~~~~---~------~~~~-~~~---~~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
.+.+..+. ..++.+.. .+.+++-++... . .... +.. ..-..++..++.-..++.-+.-|.|
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~i 283 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 283 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEE
Confidence 33332211 23333322 258888888432 1 1111 111 1345678888888899999999999
Q ss_pred EEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 005656 318 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 370 (685)
Q Consensus 318 ~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i 370 (685)
++||+.++.++..-+-....|-..+.+....=++.....|.|.--.+.....+
T Consensus 284 hlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 284 HLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred EEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 99999999999887766666655555444334555557777666666555443
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.71 E-value=0.002 Score=63.05 Aligned_cols=152 Identities=10% Similarity=0.133 Sum_probs=107.1
Q ss_pred CEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEE-eec-------CCceeEEEE---eecCCEEEEEe---------
Q 005656 254 EVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSR-WEV-------GCSLVKIVY---HRVNGLLATVA--------- 312 (685)
Q Consensus 254 ~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~-~~~-------~~~i~~~~~---~~~~~~l~~~~--------- 312 (685)
.--++.|++....++.++ ..|+|..||...+..... +.. ...+..+.+ .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 345789988766676666 789999999986654433 221 014578899 68877777644
Q ss_pred ----CCCeEEEEEcC---CCeeEEEEe--c-----------CCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCceee
Q 005656 313 ----DDLVIRLFDVV---ALRMVRKFE--G-----------HTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVILARQID 371 (685)
Q Consensus 313 ----~dg~I~i~d~~---~~~~~~~~~--~-----------h~~~I~~l~~spdg~~l~s~s~D-g~I~iwd~~~~~~i~ 371 (685)
.+..+..||+. +++.+.... . -....++++..++|+..++++.- +.|...+.. |+.+.
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEe
Confidence 26789999999 787765554 1 11248899999999999988877 777666644 44333
Q ss_pred EEeecc-------ceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 372 AIHVDV-------SITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 372 ~~~~~~-------~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.+.... ..+.++++|+|..|++.... +.++.++..
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~-g~L~~fD~~ 214 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGP-RALTAFDVS 214 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSS-SSEEEEECS
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCC-CeEEEEcCC
Confidence 332111 16799999999999999874 489999866
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.67 E-value=0.0063 Score=60.90 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=116.1
Q ss_pred CeEEEEEccCCCEEEEE------------ecCCcEEEEECCCCccc-cccccccccccCCCCcCEEEEEEcC--CCC-EE
Q 005656 204 AVKACTISACGNFAVLG------------TAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDS--TNT-LM 267 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g------------~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~--~~~-~l 267 (685)
..-.+.+.|+|..+++. ..+|.|.++|+.+.... ..+.. .............++.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 34566677776444433 26899999999743221 11110 0000011234667777755 343 45
Q ss_pred EEEE-C--CCeEEEEECCCC--c--eEEEeecC--CceeEEEEeecCCEEEEEe-----------------CCCeEEEEE
Q 005656 268 ISAG-Y--HGDIKVWDFKGR--D--LKSRWEVG--CSLVKIVYHRVNGLLATVA-----------------DDLVIRLFD 321 (685)
Q Consensus 268 ~s~s-~--dg~i~iwd~~~~--~--~~~~~~~~--~~i~~~~~~~~~~~l~~~~-----------------~dg~I~i~d 321 (685)
+.+. . +.+|.+|++... . .+..+... ...+.+.+.++|.+.++.. ..|.|+-||
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 4443 2 467888877643 2 22233332 5678999999999877754 124555555
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCC-Cce--eeEEeeccceEEEEEcC-CCCeEEEEEe
Q 005656 322 VVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVIL-ARQ--IDAIHVDVSITALSLSP-NMDVLATAHV 396 (685)
Q Consensus 322 ~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~-~~~--i~~~~~~~~v~~v~~sp-dg~~Lat~~~ 396 (685)
. ++. +.+...-...+.++||||+++|+.+. ..+.|..|++.. +.. .+.+......-.+++.+ +|.+.++++.
T Consensus 210 ~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 210 P--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp T--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred C--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecC
Confidence 4 332 22332334579999999999887665 578899999863 433 23444445588999999 5998887776
Q ss_pred CCCeEEEE
Q 005656 397 DQNGVYLW 404 (685)
Q Consensus 397 d~~~I~lW 404 (685)
++..|..|
T Consensus 287 ~g~~v~~~ 294 (355)
T 3sre_A 287 NGMRIFFY 294 (355)
T ss_dssp CHHHHHSC
T ss_pred CceEEEEE
Confidence 64344433
No 306
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.64 E-value=0.0078 Score=60.76 Aligned_cols=190 Identities=12% Similarity=0.042 Sum_probs=101.1
Q ss_pred CCeEEEEEccC---CCEEEEEec--------CCcEEEEECCCCcc----cccc-ccccccccCCCCcCEEEEEEcCCCCE
Q 005656 203 TAVKACTISAC---GNFAVLGTA--------GGWIERFNLQSGIS----RGSY-LDMSERSNYAHNGEVVGVACDSTNTL 266 (685)
Q Consensus 203 ~~v~~~~~s~~---g~~l~~g~~--------dg~i~~~d~~~~~~----~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~ 266 (685)
.....++++|+ +..+++... ...|..|++..+.. ...+ ...+......|. ...++|.|+|.+
T Consensus 66 ~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~L 143 (353)
T 2g8s_A 66 GGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYL 143 (353)
T ss_dssp CSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEE
T ss_pred CCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcE
Confidence 45678899986 555555533 23577777654311 1111 000000011243 357999999966
Q ss_pred EEEEEC-------------CCeEEEEECCCCc------------eEEEee-cCCceeEEEEeecCCEEEEEeCC--CeEE
Q 005656 267 MISAGY-------------HGDIKVWDFKGRD------------LKSRWE-VGCSLVKIVYHRVNGLLATVADD--LVIR 318 (685)
Q Consensus 267 l~s~s~-------------dg~i~iwd~~~~~------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d--g~I~ 318 (685)
.++.+. .|.|.-++....- ....+. .......++|+|....|.++... +.=.
T Consensus 144 yv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~de 223 (353)
T 2g8s_A 144 FIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDE 223 (353)
T ss_dssp EEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEE
T ss_pred EEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcE
Confidence 665543 2467667765320 111222 22457889999944444443322 1112
Q ss_pred EEEcCCC-------------------------------eeEEEEecCCCCeEEEEEcC-------CCCEEEEEeCCCcEE
Q 005656 319 LFDVVAL-------------------------------RMVRKFEGHTDRITDFCFSE-------DGKWLLSSGMDGSLR 360 (685)
Q Consensus 319 i~d~~~~-------------------------------~~~~~~~~h~~~I~~l~~sp-------dg~~l~s~s~Dg~I~ 360 (685)
|.-+..+ .++..+. +...+..++|.. +|+++++.-..+.|.
T Consensus 224 i~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~ 302 (353)
T 2g8s_A 224 INIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVI 302 (353)
T ss_dssp EECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEE
T ss_pred EeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEE
Confidence 2111111 1122222 334577888864 467777766778888
Q ss_pred EEEcCCCceeeEEee----ccceEEEEEcCCCCeEEEEE
Q 005656 361 IWDVILARQIDAIHV----DVSITALSLSPNMDVLATAH 395 (685)
Q Consensus 361 iwd~~~~~~i~~~~~----~~~v~~v~~spdg~~Lat~~ 395 (685)
..++..++.+..... ...+..+++.|||.+.++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td 341 (353)
T 2g8s_A 303 VMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTD 341 (353)
T ss_dssp EEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEEC
T ss_pred EEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEe
Confidence 888876654433221 23599999999998666543
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.63 E-value=0.00027 Score=78.57 Aligned_cols=162 Identities=12% Similarity=0.037 Sum_probs=94.8
Q ss_pred eEEEEEccCCCEE-EEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-C-CeEEEEEC
Q 005656 205 VKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-H-GDIKVWDF 281 (685)
Q Consensus 205 v~~~~~s~~g~~l-~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-d-g~i~iwd~ 281 (685)
...+++.+.+..| ++-...+.|.++++........+. .......+++++|.+.+|+.+.. . +.|..+++
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~--------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC--------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe--------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 3456777544444 444556789999887554332221 12234568899987655555442 2 67888877
Q ss_pred CCCceEEEeec-CCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCC
Q 005656 282 KGRDLKSRWEV-GCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDG 357 (685)
Q Consensus 282 ~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~spdg~~l~s~s~Dg 357 (685)
........... -.....++++|+++.|+.+ ...+.|..+|+........+. +.......|++..+ .++++....+
T Consensus 527 dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~ 605 (699)
T 1n7d_A 527 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINE 605 (699)
T ss_dssp SSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred CCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence 64332222211 2456789999886655444 456789999987543222222 12233455666443 3444555678
Q ss_pred cEEEEEcCCCceeeEEee
Q 005656 358 SLRIWDVILARQIDAIHV 375 (685)
Q Consensus 358 ~I~iwd~~~~~~i~~~~~ 375 (685)
.|..++..+|+.+..+..
T Consensus 606 ~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 606 AIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp CEEEEETTTEEEEECCCT
T ss_pred eEEEEEccCCCceEEeec
Confidence 899999888887766643
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.61 E-value=0.029 Score=56.48 Aligned_cols=189 Identities=15% Similarity=0.090 Sum_probs=102.9
Q ss_pred CCeEEEEEccC---CCEEEEEec----C----CcEEEEECCCCc--c--ccccccccccccCCCCcCEEEEEEcCCCCEE
Q 005656 203 TAVKACTISAC---GNFAVLGTA----G----GWIERFNLQSGI--S--RGSYLDMSERSNYAHNGEVVGVACDSTNTLM 267 (685)
Q Consensus 203 ~~v~~~~~s~~---g~~l~~g~~----d----g~i~~~d~~~~~--~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 267 (685)
.....++++|+ +..|++... + +.|..|+...+. . ...+... ......|. ...++|.|+|.+.
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~-~~~~~~h~--~~~l~~~pDG~Ly 149 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDG-IPGAYIHN--GGRIRFGPDGMLY 149 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEE-EECCSSCC--CCCEEECTTSCEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEc-CCCCCCcC--CceEEECCCCcEE
Confidence 45788999997 566666554 2 678888876541 1 0111000 00111233 3579999999876
Q ss_pred EEEEC-------------CCeEEEEECCCC---------ceEEEeecCCceeEEEEee-cCCEEEEEeCCC---eEEEEE
Q 005656 268 ISAGY-------------HGDIKVWDFKGR---------DLKSRWEVGCSLVKIVYHR-VNGLLATVADDL---VIRLFD 321 (685)
Q Consensus 268 ~s~s~-------------dg~i~iwd~~~~---------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~I~i~d 321 (685)
++.+. .|.|.-++.... ..+... .......++|+| ++.++++-.... .|.+..
T Consensus 150 vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~-G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~ 228 (354)
T 3a9g_A 150 ITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSY-GHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL 228 (354)
T ss_dssp EECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEE-CCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC
T ss_pred EEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEE-ccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec
Confidence 66442 245655555432 011111 124567899999 555544433222 233332
Q ss_pred cCC----------------CeeEEEEecCCCCeEEEEEc-------CCCCEEEEEeCCCcEEEEEcCCC-cee--eEEee
Q 005656 322 VVA----------------LRMVRKFEGHTDRITDFCFS-------EDGKWLLSSGMDGSLRIWDVILA-RQI--DAIHV 375 (685)
Q Consensus 322 ~~~----------------~~~~~~~~~h~~~I~~l~~s-------pdg~~l~s~s~Dg~I~iwd~~~~-~~i--~~~~~ 375 (685)
... ..++..+......+..++|. .+|+++++.-..+.|...++... ... ..+..
T Consensus 229 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~ 308 (354)
T 3a9g_A 229 KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK 308 (354)
T ss_dssp TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT
T ss_pred CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc
Confidence 110 01222331123457888884 56777777667778888888753 332 22221
Q ss_pred --ccceEEEEEcCCCCeEEEEE
Q 005656 376 --DVSITALSLSPNMDVLATAH 395 (685)
Q Consensus 376 --~~~v~~v~~spdg~~Lat~~ 395 (685)
...+..+++.|||.+.++..
T Consensus 309 ~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 309 NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCeeEEEECCCCcEEEEEe
Confidence 23489999999997666553
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.60 E-value=0.024 Score=56.72 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=60.7
Q ss_pred CceeEEEEeecCCEEEEEe-CCCeEEEEEcCC-Cee--EEEEecCCCCeEEEEEcC-CCCEEEEEeCC-CcEEEEEcC--
Q 005656 294 CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVA-LRM--VRKFEGHTDRITDFCFSE-DGKWLLSSGMD-GSLRIWDVI-- 365 (685)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~-~~~--~~~~~~h~~~I~~l~~sp-dg~~l~s~s~D-g~I~iwd~~-- 365 (685)
...+.++|+||++.++++. ..+.|+.|++.. ++. .+.+ ...+..-.+++.+ +|++.+++..+ +.|..|+-.
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~ 299 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENP 299 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSC
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCC
Confidence 5678899999998777665 568999999863 322 3344 2346678899999 59977766644 344444432
Q ss_pred CCceeeEEee---ccc-eEEEEEcCCCCeEE
Q 005656 366 LARQIDAIHV---DVS-ITALSLSPNMDVLA 392 (685)
Q Consensus 366 ~~~~i~~~~~---~~~-v~~v~~spdg~~La 392 (685)
.+..+..++. ... +..+ |..||+.|-
T Consensus 300 ~~s~v~rI~~~~~~~~~v~~v-~~ddG~~l~ 329 (355)
T 3sre_A 300 PGSEVLRIQDILSEEPKVTVV-YAENGTVLQ 329 (355)
T ss_dssp CCEEEEEEECTTSSSCEEEEE-EEECSSSCC
T ss_pred CCCEEEEEEccCCCCcEEEEE-EEcCCCEEE
Confidence 2445555543 222 4444 555776543
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.54 E-value=0.071 Score=51.58 Aligned_cols=239 Identities=15% Similarity=0.176 Sum_probs=134.6
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec
Q 005656 9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 88 (685)
Q Consensus 9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~ 88 (685)
-.+|..+ ++|.-. ...+.|+|+++.+.+.... ....|.-=.|-.+..+-+.. +..|.-|+++... .+..+..+
T Consensus 73 IMnP~~~-ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~~~L~lVT--~taVyHWs~~~~s-~P~kvFdR 145 (365)
T 2xzh_A 73 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNTVALVT--DNAVYHWSMEGES-QPVKMFDR 145 (365)
T ss_dssp EECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSSEEEEEE--SSEEEEEESSTTC-CCEEEEEC
T ss_pred eeCCCcc-EEEEec-CCeEEEechHHhhhhccee--cCCccEEEEecCCCeEEEEc--CCcEEEEcccCCC-CCceeeec
Confidence 3577776 777765 6889999999999888876 45678888887665433332 4589999987633 22222222
Q ss_pred ccC--CCCCeEEEEecCCCEEEEEeC-------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeec
Q 005656 89 SGH--SAPPLCIRFYANGRHILSAGQ-------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 159 (685)
Q Consensus 89 ~~h--~~~v~~i~~~~~~~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (685)
.+. ...|..-..+++.++++..|- .|.+.+|+.+.+.....-. + ..+|..
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG--h-------------------aa~F~~ 204 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG--H-------------------AASFAQ 204 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECC--S-------------------EEEEEE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeee--e-------------------eeeeEE
Confidence 111 344555566777888775542 3677888876543221110 0 111111
Q ss_pred ccccccCCcceEEEE----cCCceEEEEEcCccc-----cCce---eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 005656 160 AEIRERDWCNVVTCH----MDTAQAYVWRLQNFV-----LGEH---ILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 227 (685)
Q Consensus 160 ~~~~~~~~~~~~~~~----~~~~~~~~w~~~~~~-----~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 227 (685)
...........+.|- ...+.+++-++.... ..++ +.-+.....+...++.+|+.-..+++-+.-|.++
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ih 284 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH 284 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEE
Confidence 111111111112221 112567777764331 1111 1222233456678899999999999999999999
Q ss_pred EEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656 228 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 283 (685)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (685)
+||+.++.....-. -....|..-+-+....-++.....|.|.--.++.
T Consensus 285 lyDleTgt~i~~nr--------IS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 285 LYDLETGTCIYMNR--------ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEETTTCCEEEEEE--------CCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred EEEcccCcEEEEec--------cCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 99999998765432 2233443333333333344444555555444443
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.49 E-value=0.026 Score=56.81 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=42.3
Q ss_pred CCceeEEEEe-------ecCCEEEEEeCCCeEEEEEcCCC-eeE--EEEe-cCCCCeEEEEEcCCCCEEEEEe
Q 005656 293 GCSLVKIVYH-------RVNGLLATVADDLVIRLFDVVAL-RMV--RKFE-GHTDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 293 ~~~i~~~~~~-------~~~~~l~~~~~dg~I~i~d~~~~-~~~--~~~~-~h~~~I~~l~~spdg~~l~s~s 354 (685)
+.....++|. .+|.++++....+.|..+++... +.. ..+. +-...+.++++.|||.+.++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 3557778883 46767777777788999998753 332 2332 3346799999999998666654
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.48 E-value=0.11 Score=52.32 Aligned_cols=236 Identities=9% Similarity=0.065 Sum_probs=141.1
Q ss_pred CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC
Q 005656 24 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103 (685)
Q Consensus 24 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 103 (685)
+..|.|.|+.++..+.+.. -.--+.-.+|..+.+|--. ..++.|+|+++. ..++... ...+|..=.|-.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrp----i~AdsAIMnP~~~iiALra-g~~lQiFnle~K----~klks~~-~~e~VvfWkWis~ 116 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP----ISADSAIMNPASKVIALKA-GKTLQIFNIEMK----SKMKAHT-MTDDVTFWKWISL 116 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE----CCCSEEEECSSSSCEEEEE-TTEEEEEETTTT----EEEEEEE-CSSCCCEEEEEET
T ss_pred CCeEEEEECCCCCcceecc----cccceeeeCCCCcEEEEec-CCeEEEEchHHh----hhhccee-cCCCceEEEecCC
Confidence 3478889988865543222 1123556788888777665 679999999887 4444432 3456777788755
Q ss_pred CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 183 (685)
Q Consensus 104 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 183 (685)
. .|+-.+ +..|.-|++........+ +
T Consensus 117 ~-~l~lVT-~taVyHWsi~~~s~P~kv----------------------------------------------------F 142 (494)
T 1bpo_A 117 N-TVALVT-DNAVYHWSMEGESQPVKM----------------------------------------------------F 142 (494)
T ss_dssp T-EEEEEC-SSEEEEEESSSSCCCEEE----------------------------------------------------E
T ss_pred C-eEEEEc-CCeeEEecccCCCCchhh----------------------------------------------------e
Confidence 4 344333 557999998653322111 1
Q ss_pred EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEe-------cCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656 184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 256 (685)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (685)
+.... -....|.....+++.++++..+ -.|.+.+|....+..... .+|.....
T Consensus 143 dR~~~-----------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i---------eGhaa~F~ 202 (494)
T 1bpo_A 143 DRHSS-----------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFA 202 (494)
T ss_dssp ECCGG-----------GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE---------CCSEEEEE
T ss_pred ecchh-----------cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchh---------eeeeeeeE
Confidence 10000 1134566666677777665432 247788999877654322 26665555
Q ss_pred EEEEcCCC---CEEEEEEC---CCeEEEEECCCC---ce---EEEee----c---CCceeEEEEeecCCEEEEEeCCCeE
Q 005656 257 GVACDSTN---TLMISAGY---HGDIKVWDFKGR---DL---KSRWE----V---GCSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 257 ~l~~~~~~---~~l~s~s~---dg~i~iwd~~~~---~~---~~~~~----~---~~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
.+.+..+. ..++.+.. .+.+++-++... .. ....+ . ..-..++..++.-..++.-+.-|.|
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i 282 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 282 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceE
Confidence 55443221 23343433 278999988532 10 11111 1 1345678888888899999999999
Q ss_pred EEEEcCCCeeEEEEecCCCCeEEEEE
Q 005656 318 RLFDVVALRMVRKFEGHTDRITDFCF 343 (685)
Q Consensus 318 ~i~d~~~~~~~~~~~~h~~~I~~l~~ 343 (685)
++||+.++.++..-+-....|-..+.
T Consensus 283 ~lyDleTgt~i~~nrIs~~~iF~t~~ 308 (494)
T 1bpo_A 283 HLYDLETGTCIYMNRISGETIFVTAP 308 (494)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEecccceeeeeecccCCceEEecc
Confidence 99999999998776644444443333
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.47 E-value=0.059 Score=54.24 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=42.4
Q ss_pred CCcCEEEEEEcC-------CCCEEEEEECCCeEEEEECCCCceEEEee----cCCceeEEEEeecCCEEEEEe-CCCeE
Q 005656 251 HNGEVVGVACDS-------TNTLMISAGYHGDIKVWDFKGRDLKSRWE----VGCSLVKIVYHRVNGLLATVA-DDLVI 317 (685)
Q Consensus 251 h~~~v~~l~~~~-------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~-~dg~I 317 (685)
+.....++.|.. ++.++++.-..+.|...++..++...... ....+..+++.|+|.++++.. .+|.|
T Consensus 269 ~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 269 DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 345678888864 45666665567788888887654433221 125788999999998655433 34433
No 314
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.44 E-value=0.25 Score=55.48 Aligned_cols=368 Identities=12% Similarity=0.069 Sum_probs=186.7
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeeccc----ccCeeEEEEeCCCcEEEEecCCCcEEEEEecCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH----DNAIISLHFFANEPVLMSASADNSIKMWIFDTT 78 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~ 78 (685)
..|.++....+|. +.+ |+.+| |..++..+++......... ...|.++...+++..|..|+. +-+..++....
T Consensus 146 ~~i~~i~~d~~g~-lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 146 NTIYSIIRTKDNQ-IYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp SCEEEEEECTTCC-EEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CeEEEEEEcCCCC-EEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 3578888888887 433 45444 7888987776433211111 234888888877664444443 34666665433
Q ss_pred CCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 79 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
.......+ ....|.++....+|... .|+.+ -+.+++..++.... +.... .....+....+.++-
T Consensus 222 --~~~~~~~l--~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~~-~~~~~---------~~~~~l~~~~i~~i~ 285 (758)
T 3ott_A 222 --QIKQTEAF--HNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQH-IIHDS---------RNIQSLTNNIIWNIF 285 (758)
T ss_dssp --EEEEEEEE--EEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCEE-ECCCT---------TCTTSCSCSCEEEEE
T ss_pred --eEEeccCC--CCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEEE-EEcCC---------CCcCcCCcCeEEEEE
Confidence 11111111 22347777776667544 45544 47777765443221 11000 000001111111111
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCccccCceee--cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcc
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL--RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 236 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~ 236 (685)
...+. .+-.+. ..+ +....... ....... .........|.++....+|+.- +|+.+| +..++..++..
T Consensus 286 ----~D~~g-~lWiGT-~~G-l~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~~~~~ 355 (758)
T 3ott_A 286 ----ADQEH-NIWLGT-DYG-ISLSRYNS-ALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTDPAGER 355 (758)
T ss_dssp ----ECTTC-CEEEEE-SSS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESCTTSSC
T ss_pred ----EcCCC-CEEEEe-CCc-ccccccCC-ceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeeccccccc
Confidence 11111 111111 222 22221111 0000000 0001223468888888777654 455554 77777665422
Q ss_pred cc--ccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-------cCCceeEEEEeecCCE
Q 005656 237 RG--SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-------VGCSLVKIVYHRVNGL 307 (685)
Q Consensus 237 ~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~ 307 (685)
.. .+.... ....-....|.++.-+.+|++.+ |+ ++-+..||..+++...... ....|.++...++| .
T Consensus 356 ~~~~~~~~~~-~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~ 431 (758)
T 3ott_A 356 HDAIWYRMGD-KTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG-Q 431 (758)
T ss_dssp CCCEEECTTC-SSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS-E
T ss_pred ceeEEeccCC-cCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC-C
Confidence 11 111000 00001234689999888887544 55 4679999988876543221 11346666665555 4
Q ss_pred EEEEeCCCeEEEEEcCCC-----eeE---EEEe---c-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe-
Q 005656 308 LATVADDLVIRLFDVVAL-----RMV---RKFE---G-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH- 374 (685)
Q Consensus 308 l~~~~~dg~I~i~d~~~~-----~~~---~~~~---~-h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~- 374 (685)
|.+|+..+-+.++|..+. ... ..+. + ....|.++...++|++.+.++..+-|..+|..+++......
T Consensus 432 lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~ 511 (758)
T 3ott_A 432 LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFAD 511 (758)
T ss_dssp EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTT
T ss_pred EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCC
Confidence 566776667888886531 111 1221 1 12358999999999866533334458889987765443221
Q ss_pred ---eccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 375 ---VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 375 ---~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
....+.++....+|.+.+.+ .+ ++..++..
T Consensus 512 ~~~~~~~~~~i~~d~~g~lWigt--~~-Gl~~~~~~ 544 (758)
T 3ott_A 512 ELTGEKSPNYLLCDEDGLLWVGF--HG-GVMRINPK 544 (758)
T ss_dssp TSCGGGCEEEEEECTTSCEEEEE--TT-EEEEECC-
T ss_pred CcCCCcccceEEECCCCCEEEEe--cC-ceEEEecC
Confidence 12348889888888877654 34 78888743
No 315
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.41 E-value=0.27 Score=55.23 Aligned_cols=314 Identities=11% Similarity=0.101 Sum_probs=170.7
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCC
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 82 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~ 82 (685)
..|+||.-..+|. |-.|+.+| +..||-.+.+............|.++....++. |..|+.+| +..+|..+.
T Consensus 22 n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~---- 92 (758)
T 3ott_A 22 SVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRAD---- 92 (758)
T ss_dssp CCEEEEEECTTSC--EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTE-EEEEETTE-EEEEETTTT----
T ss_pred ceEEEEEECCCCC--EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCC----
Confidence 4689999998886 44566677 677774332211111111235688888777774 44444444 677876543
Q ss_pred ceeEecccCCCCCeEEEEecCCCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccc
Q 005656 83 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 162 (685)
Q Consensus 83 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (685)
+...........|.++.. .+| .|..++.+ -+..++..+++.. .+.... .
T Consensus 93 ~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~-----~---------------------- 141 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRR-----N---------------------- 141 (758)
T ss_dssp EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHH-----H----------------------
T ss_pred EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCC-----C----------------------
Confidence 111111111234565543 344 45556655 4667776443321 110000 0
Q ss_pred cccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcccccccc
Q 005656 163 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 242 (685)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 242 (685)
. .....|.++....+|+..+ |+.+| +..|+..++........
T Consensus 142 ----------------------------------~--l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~ 183 (758)
T 3ott_A 142 ----------------------------------G--LPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLP 183 (758)
T ss_dssp ----------------------------------C--CSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCC
T ss_pred ----------------------------------C--cCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCC
Confidence 0 1134577777777776544 55554 88888877654321110
Q ss_pred ccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec-CCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 005656 243 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFD 321 (685)
Q Consensus 243 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d 321 (685)
. ........|.++..++++..|..|+. +.+..+|..+++....... ...|.++....+|.+. +|+. +-+.+++
T Consensus 184 --~-~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~ 257 (758)
T 3ott_A 184 --V-HSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYH 257 (758)
T ss_dssp --C-CTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEEC
T ss_pred --C-ccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEe
Confidence 0 00012335889988887775555653 5688899877654332111 2457777777666644 4454 4588888
Q ss_pred cCCCeeEEEEec-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee--------ccceEEEEEcC
Q 005656 322 VVALRMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV--------DVSITALSLSP 386 (685)
Q Consensus 322 ~~~~~~~~~~~~-------h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~--------~~~v~~v~~sp 386 (685)
..+++....... ....|.++....+|.+-+ |+..| +.++... . ....+.. ...|.++.-..
T Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~ 333 (758)
T 3ott_A 258 NDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDS 333 (758)
T ss_dssp CTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECT
T ss_pred cCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcC
Confidence 877654322110 123588998888877444 44456 5554322 1 2222211 23488999888
Q ss_pred CCCeEEEEEeCCCeEEEEEcC
Q 005656 387 NMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 387 dg~~Lat~~~d~~~I~lW~~~ 407 (685)
+|.+.+.+ .+ ++..++.+
T Consensus 334 ~g~lWiGt--~~-Gl~~~~~~ 351 (758)
T 3ott_A 334 KGFYWFGG--AN-GLIRFTDP 351 (758)
T ss_dssp TCCEEEEE--TT-EEEEESCT
T ss_pred CCCEEEee--CC-cceeeccc
Confidence 88766554 33 67777544
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.39 E-value=0.14 Score=51.53 Aligned_cols=212 Identities=13% Similarity=0.216 Sum_probs=118.7
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEec
Q 005656 9 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 88 (685)
Q Consensus 9 ~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~ 88 (685)
-.+|..+ ++|.-. ..++.|+|+++...+.... ....|.-=.|-.+.. |+-.+ +..|.-|+++... .+.+.+
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s---~P~kvF 142 (494)
T 1bpo_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES---QPVKMF 142 (494)
T ss_dssp EECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEETTE-EEEEC-SSEEEEEESSSSC---CCEEEE
T ss_pred eeCCCCc-EEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCCCe-EEEEc-CCeeEEecccCCC---Cchhhe
Confidence 3577766 777655 6889999999998888876 455677777766554 33332 4689999987633 222332
Q ss_pred ccC----CCCCeEEEEecCCCEEEEEeC-------CCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeee
Q 005656 89 SGH----SAPPLCIRFYANGRHILSAGQ-------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 157 (685)
Q Consensus 89 ~~h----~~~v~~i~~~~~~~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (685)
..| ...|..-..+++.++++..|- .|.+.+|+.+.+.....-. + ..+|
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG--h-------------------aa~F 201 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG--H-------------------AASF 201 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC--S-------------------EEEE
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee--e-------------------eeee
Confidence 222 345555666778888775542 3566677665443211100 0 0000
Q ss_pred ecccccccCCcceEEEEcCCceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC-cc
Q 005656 158 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-IS 236 (685)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~-~~ 236 (685)
. .+.+.. ...+..+.|++.... ..+.+++.++... ..
T Consensus 202 ~-----------------------~~~~~g-----------~~~~~~lf~fa~r~~--------~g~kLhi~Ei~~~~~~ 239 (494)
T 1bpo_A 202 A-----------------------QFKMEG-----------NAEESTLFCFAVRGQ--------AGGKLHIIEVGTPPTG 239 (494)
T ss_dssp E-----------------------EEECTT-----------CSSEEEEEEEEECST--------TCCEEEEEECSCCCTT
T ss_pred E-----------------------EEecCC-----------CCCCceEEEEEEecC--------CCcEEEEEEcCCCccC
Confidence 0 000000 011111222222111 1367888888543 11
Q ss_pred cccccccccc---ccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec
Q 005656 237 RGSYLDMSER---SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 292 (685)
Q Consensus 237 ~~~~~~~~~~---~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (685)
...+...... ......+-..++.+++....+...+.-|.+.+||+.++.++..-+.
T Consensus 240 ~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 240 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp CCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 1122111100 1113345567888999888898999999999999999988776554
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.37 E-value=0.017 Score=56.76 Aligned_cols=106 Identities=11% Similarity=0.134 Sum_probs=58.3
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 005656 213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWDFK 282 (685)
Q Consensus 213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~ 282 (685)
+++.+++|+.+ ..+.+||+.++.....-. .+ ........+.+ +++.++.|+.+ ..+.+||+.
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP-MA-----TKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC-CS-----SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC-CC-----cccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCC
Confidence 56667777654 468999998876543211 00 11111122222 56677777654 468999998
Q ss_pred CCceEEEeecC-CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCe
Q 005656 283 GRDLKSRWEVG-CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALR 326 (685)
Q Consensus 283 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~ 326 (685)
+.+-...-..+ ......+..-++++++.|+.+ ..+.+||+.+.+
T Consensus 231 ~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 231 TDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp TTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 87654432222 111111222366777777655 367788887653
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.32 E-value=0.028 Score=55.10 Aligned_cols=147 Identities=12% Similarity=0.053 Sum_probs=79.3
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 005656 213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWDFK 282 (685)
Q Consensus 213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~ 282 (685)
++..+++|+.+ ..+.+||+.++.....-. .+ ... ..-..+.+ +++.++.|+.+ ..+.+||..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p----~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~ 183 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD-MQ----TAR-EGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPH 183 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE-CS----SCC-BSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCC-CC----CCc-ccceEEEE--CCEEEEECCCCCCcccceEEEEeCC
Confidence 56666676543 368899988776543211 00 011 11112222 56677777654 458899988
Q ss_pred CCceEEEeecCCc-eeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEe
Q 005656 283 GRDLKSRWEVGCS-LVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRKF--EGHTDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 283 ~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~--~~h~~~I~~l~~spdg~~l~s~s 354 (685)
+.+-...-..+.+ ....+..-++.+++.|+.+ ..+.+||+.+.+-...- .........+.+ ++++++.|+
T Consensus 184 ~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG 261 (301)
T 2vpj_A 184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAG 261 (301)
T ss_dssp TTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred CCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcC
Confidence 7755443222211 1111222356777777654 46899999877543221 111111222223 677777777
Q ss_pred CC-----CcEEEEEcCCCce
Q 005656 355 MD-----GSLRIWDVILARQ 369 (685)
Q Consensus 355 ~D-----g~I~iwd~~~~~~ 369 (685)
.+ ..|.+||..+.+-
T Consensus 262 ~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 262 YDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp BCSSSBEEEEEEEETTTTEE
T ss_pred cCCCcccccEEEEcCCCCeE
Confidence 55 3578888876543
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.31 E-value=0.16 Score=50.42 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=64.2
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEE--e---ecccccCeeEEEEeCC----CcEEEEe--cCCCcEEEE
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV--I---REAHDNAIISLHFFAN----EPVLMSA--SADNSIKMW 73 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~--~---~~~h~~~V~~l~~sp~----~~~l~s~--s~D~~v~iW 73 (685)
-+.|+|.|||+ ++++-...|.|++++..+++.... + .....+....|+|+|+ +.+.++- ..++.|.-|
T Consensus 34 P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 34 PWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred ceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 47899999998 777665589999998765543221 1 1123567899999995 4333332 234555555
Q ss_pred EecCCC------CCCc-eeEecc-cCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 74 IFDTTD------GDPR-LLRFRS-GHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 74 d~~~~~------~~~~-~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
.++... ...+ ++..+. +.......|.|.|||.+.++.+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~ 161 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG 161 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTT
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCC
Confidence 554421 0112 222221 2223456799999997777665443
No 320
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.29 E-value=0.078 Score=51.84 Aligned_cols=164 Identities=7% Similarity=0.023 Sum_probs=93.8
Q ss_pred EEccCCCEEEEEe----cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC-CCeEEEEECCC
Q 005656 209 TISACGNFAVLGT----AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKG 283 (685)
Q Consensus 209 ~~s~~g~~l~~g~----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~ 283 (685)
.+++++++++... ....|+..++..... ..+. .+.. ..++++++.|+-.+. ...|..-++.+
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt--------~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIK--------NHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEE--------SSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEe--------CCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 6777888888776 344666667664332 2221 2211 345777888876664 57888888877
Q ss_pred CceEEEeecCCceeEEEEeecCCEEEEEeCC--CeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeC--CCcE
Q 005656 284 RDLKSRWEVGCSLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM--DGSL 359 (685)
Q Consensus 284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~--Dg~I 359 (685)
+.....+.. ... ..++|++++|+-...+ ..|..-++.... ...+.. ..+ ..|+|++++|..++. .+.|
T Consensus 177 ~~~~~l~~~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i 248 (302)
T 3s25_A 177 QSEALFYDC--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPAL 248 (302)
T ss_dssp TEEEEEECS--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEE
T ss_pred CCEEEEeCC--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEE
Confidence 665444332 222 3466999988776543 467777776554 233332 233 347888998886642 3456
Q ss_pred EEEEcCCCceeeEEeeccceEEEEEcCCCCeEEEEEeC
Q 005656 360 RIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 360 ~iwd~~~~~~i~~~~~~~~v~~v~~spdg~~Lat~~~d 397 (685)
..-++.... ...+... .+. .+++.+.+|+-+...
T Consensus 249 ~~~~~DG~~-r~~l~~~-~~~--~i~i~~d~Iy~td~~ 282 (302)
T 3s25_A 249 CVVKNDGTG-FKELAKG-EFC--NINVTSQYVYFTDFV 282 (302)
T ss_dssp EEEETTSCC-CEEEEES-CEE--EEEECSSEEEEEETT
T ss_pred EEEECCCCc-cEEeeCC-ccc--eEEEeCCEEEEEECC
Confidence 666654333 3333222 232 344566666665433
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.28 E-value=0.039 Score=55.58 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=97.5
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCceEEEeecC-----CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe-------
Q 005656 259 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR------- 326 (685)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~------- 326 (685)
....+|..++.+- ++.||.-++......+.+..+ ..+..+..+|+|++||..+. ..|.|..+..+.
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 3345666666654 588998888754444444443 36788999999999999864 588888887321
Q ss_pred -----eEEEEec------CCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCc--ee------eEEeec---cceEE
Q 005656 327 -----MVRKFEG------HTDRITDFCFSED---GKWLLSSGMDGSLRIWDVILAR--QI------DAIHVD---VSITA 381 (685)
Q Consensus 327 -----~~~~~~~------h~~~I~~l~~spd---g~~l~s~s~Dg~I~iwd~~~~~--~i------~~~~~~---~~v~~ 381 (685)
..+.+.- ...+|..+.|+|- +..|++-..|+.||+||+.... +. ..+... ..|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 1233332 2567999999994 5689999999999999998522 12 111111 34899
Q ss_pred EEEcCCCCeEEEEE--eCCCeEEEE
Q 005656 382 LSLSPNMDVLATAH--VDQNGVYLW 404 (685)
Q Consensus 382 v~~spdg~~Lat~~--~d~~~I~lW 404 (685)
++|+++|-.|...+ .+| -||-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~G-DIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGG-DIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSC-EEEEE
T ss_pred EEEcCCCcEEEEEecCCCC-CEEEE
Confidence 99999888888766 555 55543
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.28 E-value=0.018 Score=56.51 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=57.4
Q ss_pred CCCEEEEEec-------CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEE
Q 005656 213 CGNFAVLGTA-------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWD 280 (685)
Q Consensus 213 ~g~~l~~g~~-------dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd 280 (685)
+++..++|+. ...+.+||+.++.....-. .+ ... .....+.+ +++.++.|+.+ ..+.+||
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p----~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 226 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE-MS----TRR-SGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYD 226 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC-CS----SCC-BSCEEEEE--TTEEEEECCBSSSSBCCCEEEEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC-Cc----ccc-ccccEEEE--CCEEEEECCCCCCcccceEEEEe
Confidence 5566666654 2458899998876543211 00 011 11122222 56777777754 3688999
Q ss_pred CCCCceEEEeecC-CceeEEEEeecCCEEEEEeCCC-----eEEEEEcCCCe
Q 005656 281 FKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDL-----VIRLFDVVALR 326 (685)
Q Consensus 281 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg-----~I~i~d~~~~~ 326 (685)
..+.+-...-... ......+...++.+++.|+.++ .+.+||+.+.+
T Consensus 227 ~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 227 PTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 9877544332222 1111112223667777777553 47888887764
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.25 E-value=0.076 Score=52.09 Aligned_cols=105 Identities=12% Similarity=0.003 Sum_probs=56.8
Q ss_pred CCCEEEEEec---------CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEE
Q 005656 213 CGNFAVLGTA---------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKV 278 (685)
Q Consensus 213 ~g~~l~~g~~---------dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~i 278 (685)
+++..++|+. ...+.+||+.+......-. .+ .....-..+.+ +++.++.|+.+ ..+.+
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~ 220 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP-MI-----EARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEY 220 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC-CS-----SCCBSCEEEEE--TTEEEEECCEETTEEBCCEEE
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC-cc-----chhhcceEEEE--CCEEEEEeCCCCCCCCceEEE
Confidence 5566666653 3458899998875443211 00 11111122222 56667776643 35889
Q ss_pred EECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCe
Q 005656 279 WDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALR 326 (685)
Q Consensus 279 wd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~ 326 (685)
||..+.+-...-..+ ..-..++. -++.+++.|+.+ ..+.+||+.+.+
T Consensus 221 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 221 YDIKLNEWKMVSPMPWKGVTVKCAA-VGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EETTTTEEEECCCCSCCBSCCEEEE-ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred eeCCCCcEEECCCCCCCccceeEEE-ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 999876544332222 11112222 267778888754 468889988753
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.19 E-value=0.029 Score=55.09 Aligned_cols=145 Identities=16% Similarity=0.148 Sum_probs=77.2
Q ss_pred CCCEEEEEecCC-----cEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-------CeEEEEE
Q 005656 213 CGNFAVLGTAGG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-------GDIKVWD 280 (685)
Q Consensus 213 ~g~~l~~g~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-------g~i~iwd 280 (685)
++..+++|+.++ .+.+||+.+......-. .+ ........+.+ +++.++.|+.+ ..+.+||
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd 179 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP-MN-----TRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYN 179 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC-CS-----SCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC-CC-----CcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEe
Confidence 566777776553 58889988776543211 00 11111122222 45666666542 3588999
Q ss_pred CCCCceEEEeecC--CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCCEEE
Q 005656 281 FKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWLL 351 (685)
Q Consensus 281 ~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~~l~ 351 (685)
..+.+-...-..+ ..-.+++ .-++.+++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++++++
T Consensus 180 ~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v 256 (302)
T 2xn4_A 180 ATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYV 256 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred CCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEE
Confidence 9877544332222 1111222 2357777777654 3689999987653322 1111111122222 677777
Q ss_pred EEeCCC-----cEEEEEcCCCc
Q 005656 352 SSGMDG-----SLRIWDVILAR 368 (685)
Q Consensus 352 s~s~Dg-----~I~iwd~~~~~ 368 (685)
.|+.++ .+.+||..+.+
T Consensus 257 ~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 257 VGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp ECCBCSSSBCCCEEEEETTTTE
T ss_pred ECCcCCCcccccEEEEcCCCCe
Confidence 777553 47888877654
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.18 E-value=0.091 Score=52.22 Aligned_cols=189 Identities=10% Similarity=0.043 Sum_probs=98.8
Q ss_pred CCCeEEEEEccC---CCEEEEEe---cCCcEEEEECCCCcc----c---cc-cccccccccCCCCcCEEEEEEcCCCCEE
Q 005656 202 PTAVKACTISAC---GNFAVLGT---AGGWIERFNLQSGIS----R---GS-YLDMSERSNYAHNGEVVGVACDSTNTLM 267 (685)
Q Consensus 202 ~~~v~~~~~s~~---g~~l~~g~---~dg~i~~~d~~~~~~----~---~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l 267 (685)
......++++|+ +..+++.+ .++.|..|.+..+.. . .. +...+ ....|. ...|.|.|+|.+.
T Consensus 79 ~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p--~~~~H~--g~~l~fgpDG~Ly 154 (347)
T 3das_A 79 EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIP--KGVIHN--GGRIAFGPDKMLY 154 (347)
T ss_dssp TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEEC--CCSSCC--CCCEEECTTSCEE
T ss_pred CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCC--CCCCcc--CccccCCCCCCEE
Confidence 456788999985 45555543 356777777765321 1 11 11100 112343 4579999999877
Q ss_pred EEEEC-------------CCeEEEEECCCCc-------eEEEee-cCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCC
Q 005656 268 ISAGY-------------HGDIKVWDFKGRD-------LKSRWE-VGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVAL 325 (685)
Q Consensus 268 ~s~s~-------------dg~i~iwd~~~~~-------~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~I~i~d~~~~ 325 (685)
++.+. .|.|.-.+....- -...+. .......++|+|+|.+.++-. .|+.=.|.-+..+
T Consensus 155 vt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G 234 (347)
T 3das_A 155 AGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPG 234 (347)
T ss_dssp EECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTT
T ss_pred EEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCC
Confidence 77542 2455555544220 001122 224567899999877555432 2322222222221
Q ss_pred e------------------eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee----eEEee-ccceEEE
Q 005656 326 R------------------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI----DAIHV-DVSITAL 382 (685)
Q Consensus 326 ~------------------~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i----~~~~~-~~~v~~v 382 (685)
. ++..+..+......++|. +|..++..-..+.|....+..+..+ ..+.. ...+..|
T Consensus 235 ~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv 313 (347)
T 3das_A 235 DNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTV 313 (347)
T ss_dssp CBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEE
T ss_pred CEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEE
Confidence 1 122332222356778886 4555555555566666666544321 12221 2348999
Q ss_pred EEcCCCCeEEEEE
Q 005656 383 SLSPNMDVLATAH 395 (685)
Q Consensus 383 ~~spdg~~Lat~~ 395 (685)
+..|||.++++..
T Consensus 314 ~~~pDG~lyv~td 326 (347)
T 3das_A 314 APAGGDKLWLVTS 326 (347)
T ss_dssp EEEETTEEEEEEC
T ss_pred EECCCCcEEEEEc
Confidence 9999997766654
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.13 E-value=0.021 Score=56.17 Aligned_cols=145 Identities=10% Similarity=0.075 Sum_probs=77.8
Q ss_pred CCCEEEEEecC------CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC---------CCeEE
Q 005656 213 CGNFAVLGTAG------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---------HGDIK 277 (685)
Q Consensus 213 ~g~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---------dg~i~ 277 (685)
++..+++|+.+ ..+.+||+.+......-. .+. ....| ..+.+ +++.++.|+. -..+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~-~r~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~ 172 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS-MLT-QRCSH----GMVEA--NGLIYVCGGSLGNNVSGRVLNSCE 172 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC-CSS-CCBSC----EEEEE--TTEEEEECCEESCTTTCEECCCEE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC-CcC-Cccee----EEEEE--CCEEEEECCCCCCCCcccccceEE
Confidence 56666777654 468999998876433211 000 01112 12222 5566666653 34588
Q ss_pred EEECCCCceEEEeecC--CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCC
Q 005656 278 VWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGK 348 (685)
Q Consensus 278 iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~ 348 (685)
+||..+.+-...-... ..-..++. -++++++.|+.+ ..+.+||+.+.+-... +.........+.+ +++
T Consensus 173 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 249 (306)
T 3ii7_A 173 VYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSI 249 (306)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTE
T ss_pred EeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCE
Confidence 9999887544332222 11112222 256677777643 3688999987643221 1111112223333 677
Q ss_pred EEEEEeCC-----CcEEEEEcCCCc
Q 005656 349 WLLSSGMD-----GSLRIWDVILAR 368 (685)
Q Consensus 349 ~l~s~s~D-----g~I~iwd~~~~~ 368 (685)
+++.|+.+ ..+.+||..+.+
T Consensus 250 i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 250 VYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 78888754 457888887654
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.10 E-value=0.063 Score=53.01 Aligned_cols=107 Identities=9% Similarity=-0.023 Sum_probs=56.6
Q ss_pred cCCCEEEEEec------CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC-----eEEEEE
Q 005656 212 ACGNFAVLGTA------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-----DIKVWD 280 (685)
Q Consensus 212 ~~g~~l~~g~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-----~i~iwd 280 (685)
.+++.++.|+. ...+.+||+.+..-...-. .+ .....-..+.+ +++.++.|+.++ .+.+||
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP-MQ-----TARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC-CS-----SCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC-CC-----CchhceEEEEE--CCEEEEEeccCCCCccceEEEEE
Confidence 35566677765 2468999998875443211 00 11111112222 567777777654 588899
Q ss_pred CCCCceEEEeecCC-ceeEEEEeecCCEEEEEeCCC--------------eEEEEEcCCCe
Q 005656 281 FKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVADDL--------------VIRLFDVVALR 326 (685)
Q Consensus 281 ~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg--------------~I~i~d~~~~~ 326 (685)
..+.+-...-..+. .....+..-++++++.|+.++ .+.+||+.+.+
T Consensus 219 ~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 219 ITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred CCCCeEEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 98775443322221 111112223567777776532 36677776654
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0037 Score=61.94 Aligned_cols=152 Identities=11% Similarity=0.026 Sum_probs=83.8
Q ss_pred ecCCcEEEEECCCCccccccccccccccCCCCcCEEE---EEE-c----CCCCEEEEEECCCeEEEEECCCCceEEEeec
Q 005656 221 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG---VAC-D----STNTLMISAGYHGDIKVWDFKGRDLKSRWEV 292 (685)
Q Consensus 221 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~---l~~-~----~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (685)
+.||.|+.++..+|.....+..... ....++.. ..+ + ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~l----v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQL----VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHH----HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred CCCCEEEEEECCCCcEEeeeccccc----eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 6899999999888855433321100 11222221 001 0 1355788999999999999999999999876
Q ss_pred CCcee--------EEEEe-----ecCCEEEEEeCCCeEEEEEcCCCee----EEEEecCCCC--e-EEEEEcCCCCEEEE
Q 005656 293 GCSLV--------KIVYH-----RVNGLLATVADDLVIRLFDVVALRM----VRKFEGHTDR--I-TDFCFSEDGKWLLS 352 (685)
Q Consensus 293 ~~~i~--------~~~~~-----~~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~--I-~~l~~spdg~~l~s 352 (685)
..+.. |.... ..+..++.+..+..+.+.+ ++|+. ......+... + ..-..+.|+.+ +.
T Consensus 140 ~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~ 217 (339)
T 2be1_A 140 GSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IA 217 (339)
T ss_dssp TCBCC--------------------CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EE
T ss_pred CCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EE
Confidence 53321 11111 1245677777777777766 44431 1111111100 0 00011234666 44
Q ss_pred EeCCCcEEEEEcCCCceee-EEeeccc
Q 005656 353 SGMDGSLRIWDVILARQID-AIHVDVS 378 (685)
Q Consensus 353 ~s~Dg~I~iwd~~~~~~i~-~~~~~~~ 378 (685)
++.||.|.-+|..+|..+. .....++
T Consensus 218 ~~~dg~v~A~d~~~G~~~W~~~~l~sP 244 (339)
T 2be1_A 218 PFRDKSLLASDLDFRIARWVSPTFPGI 244 (339)
T ss_dssp EETTTEEEEECSTTCCEEEECCCCSSC
T ss_pred ECCCCEEEEEECCCCcEEEEeecCCCC
Confidence 6788999999988888765 4444444
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.01 Score=58.77 Aligned_cols=113 Identities=9% Similarity=0.076 Sum_probs=66.6
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEe---CCCcEEEEe-cCCCcEEEEEecCCCCCCceeEeccc--
Q 005656 17 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF---ANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSG-- 90 (685)
Q Consensus 17 ~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s---p~~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~~~~~-- 90 (685)
++++++.||.|.-.|.++|+....+......++....-. .++..++.. +.||.+..++...+. .+.-.....
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~--~~~~~~~~~lv 89 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL--QKLPLSIRQLV 89 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE--EEEEEEHHHHH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc--EEeeeccccce
Confidence 688899999999999999999998873321233221100 122333333 578888777755431 111111100
Q ss_pred CCCCCeE---EEE-----ecCCCEEEEEeCCCceEEEEeecCceeeEec
Q 005656 91 HSAPPLC---IRF-----YANGRHILSAGQDRAFRLFSVIQDQQSRELS 131 (685)
Q Consensus 91 h~~~v~~---i~~-----~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 131 (685)
...++.. ... ...+..+++++.+|.+...|+.+++....+.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 1112111 000 0135578999999999999999999877765
No 330
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.92 E-value=0.13 Score=53.50 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=74.2
Q ss_pred CEEEEEEcCCCCEEEEEE-CCCeEEEEECCCC------c-------eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE
Q 005656 254 EVVGVACDSTNTLMISAG-YHGDIKVWDFKGR------D-------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 319 (685)
Q Consensus 254 ~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~------~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i 319 (685)
...++.++|+|++++.++ .+.++.++|+... + .......+-.....+|.++|....+..-|..|.-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 345788999999988776 6789999998741 1 2444555677888999999966666678999999
Q ss_pred EEcCCC----------eeEEEEecCCCCeEEEE-----EcCCCCEEEEEe
Q 005656 320 FDVVAL----------RMVRKFEGHTDRITDFC-----FSEDGKWLLSSG 354 (685)
Q Consensus 320 ~d~~~~----------~~~~~~~~h~~~I~~l~-----~spdg~~l~s~s 354 (685)
|++... ..+.++.-|-.+-.-.+ -.|||+||++..
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 999764 56677776655432221 267999999985
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.85 E-value=0.58 Score=48.66 Aligned_cols=108 Identities=17% Similarity=0.292 Sum_probs=61.7
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeE--Eeec-----ccccCeeEEEEeCC---CcEE-EEecC-------
Q 005656 5 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS--VIRE-----AHDNAIISLHFFAN---EPVL-MSASA------- 66 (685)
Q Consensus 5 V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~--~~~~-----~h~~~V~~l~~sp~---~~~l-~s~s~------- 66 (685)
-++|+|.|||+ ++++-...+.|++++..+++... .+.. ...+....|+|+|+ +..| ++-+.
T Consensus 29 P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 29 PHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred ceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 46899999998 77665444579888866554322 2221 12456789999995 4444 43322
Q ss_pred -----CCcEEEEEecCCCCC---Cc-eeEecc-cCCCCCeEEEEecCCCEEEEEeCC
Q 005656 67 -----DNSIKMWIFDTTDGD---PR-LLRFRS-GHSAPPLCIRFYANGRHILSAGQD 113 (685)
Q Consensus 67 -----D~~v~iWd~~~~~~~---~~-~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~d 113 (685)
...|.-|+++..... .+ ++..+. ........|.|.|||.+.++.+..
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence 124555554432211 11 222121 122346889999999877766543
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.80 E-value=0.095 Score=51.49 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=57.6
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 005656 213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWDFK 282 (685)
Q Consensus 213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~ 282 (685)
++..+++|+.+ ..+.+||+.+......-. .+ ........+.+ +++.++.|+.+ ..+.+||+.
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA-MN-----TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC-CS-----SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC-CC-----CccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC
Confidence 56666777654 468999998775543211 00 11111122222 56677777654 468999998
Q ss_pred CCceEEEeecC--CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCe
Q 005656 283 GRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALR 326 (685)
Q Consensus 283 ~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~ 326 (685)
+.+-...-..+ ..-.+++. -++++++.|+.+ ..+.+||+.+.+
T Consensus 240 ~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 240 TETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 77544332222 11112222 356777777644 357788887654
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.77 E-value=0.14 Score=50.57 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=55.4
Q ss_pred cCCCEEEEEec------CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEE
Q 005656 212 ACGNFAVLGTA------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWD 280 (685)
Q Consensus 212 ~~g~~l~~g~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd 280 (685)
.++...++|+. ...+.+||+.+......-. .+ ........+.+ +++.++.|+.+ ..+.+||
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p-----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP-MK-----TPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC-CS-----SCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC-CC-----CCcccceEEEE--CCEEEEEcCcCCCCccceEEEEE
Confidence 35666666653 2469999998876443211 00 11111122222 56677777643 3577899
Q ss_pred CCCCceEEEeecCCc-eeEEEEeecCCEEEEEeCC--------------CeEEEEEcCCCe
Q 005656 281 FKGRDLKSRWEVGCS-LVKIVYHRVNGLLATVADD--------------LVIRLFDVVALR 326 (685)
Q Consensus 281 ~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d--------------g~I~i~d~~~~~ 326 (685)
+.+.+-...-..+.+ ....+...++.+++.|+.+ ..+.+||+.+.+
T Consensus 229 ~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 229 LKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp TTTCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred CCCCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 887654432222211 1111223356677776643 346777777654
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.58 E-value=0.13 Score=51.64 Aligned_cols=141 Identities=7% Similarity=-0.061 Sum_probs=68.1
Q ss_pred CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEEC------CCeEEEEEC--CCCceEEEeec--C
Q 005656 224 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY------HGDIKVWDF--KGRDLKSRWEV--G 293 (685)
Q Consensus 224 g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~------dg~i~iwd~--~~~~~~~~~~~--~ 293 (685)
..+.+||+.+......-. .+ ....... +++.. +++.++.|+. ...+..||+ .+.+-...-.. .
T Consensus 168 ~~v~~yd~~~~~W~~~~~-~p----~~~~~~~-~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~ 240 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGE-SP----WYGTAGA-AVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP 240 (357)
T ss_dssp CEEEEEETTTTEEEEEEE-CS----SCCCBSC-EEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT
T ss_pred ccEEEEeCCCCcEEECCC-CC----CCCcccc-cEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC
Confidence 578999998876543311 00 0111111 22222 4566666653 235777877 44332221111 1
Q ss_pred C-ceeEEEEeecCCEEEEEeCC----------------------CeEEEEEcCCCe--eEEEEecCCCCeEEEEEcCCCC
Q 005656 294 C-SLVKIVYHRVNGLLATVADD----------------------LVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGK 348 (685)
Q Consensus 294 ~-~i~~~~~~~~~~~l~~~~~d----------------------g~I~i~d~~~~~--~~~~~~~h~~~I~~l~~spdg~ 348 (685)
. .....+...++.+++.|+.+ ..+.+||+.+.+ .+..+......-.++ ..+++
T Consensus 241 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~ 318 (357)
T 2uvk_A 241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNS 318 (357)
T ss_dssp TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTE
T ss_pred cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCE
Confidence 1 11222334466777777632 257889988653 333333222222222 33778
Q ss_pred EEEEEeCCC------cEEEEEcCCCceeeEE
Q 005656 349 WLLSSGMDG------SLRIWDVILARQIDAI 373 (685)
Q Consensus 349 ~l~s~s~Dg------~I~iwd~~~~~~i~~~ 373 (685)
+++.|+.++ .|.++++.+++.+...
T Consensus 319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 888888543 3666688887766544
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.58 E-value=0.15 Score=51.34 Aligned_cols=145 Identities=18% Similarity=0.221 Sum_probs=95.0
Q ss_pred EEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCC--CCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc-
Q 005656 209 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA--HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD- 285 (685)
Q Consensus 209 ~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~- 285 (685)
....+|..++++.. +.|+.-++..+..-+.+.. .. .-..|..+..+|+|++|+..+ +..|.|-.+..+.
T Consensus 27 ~~~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~------~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~ 98 (452)
T 3pbp_A 27 FSSQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNF------SRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYS 98 (452)
T ss_dssp EEETTTTEEEEEET-TEEEEEETTTCSSCEEEEC------TTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCS
T ss_pred EEEcCCCEEEEEEC-CEEEEEECCCCCcceEEec------CcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccc
Confidence 44455666655543 6777778775432222210 01 123577899999999998886 5688888887321
Q ss_pred -----------eEEEeec-------CCceeEEEEeecC---CEEEEEeCCCeEEEEEcCCC--eeEEEEe---------c
Q 005656 286 -----------LKSRWEV-------GCSLVKIVYHRVN---GLLATVADDLVIRLFDVVAL--RMVRKFE---------G 333 (685)
Q Consensus 286 -----------~~~~~~~-------~~~i~~~~~~~~~---~~l~~~~~dg~I~i~d~~~~--~~~~~~~---------~ 333 (685)
....+.. ..+|..+.|||-+ ..|++-..|+.|++||+... ++. .+. .
T Consensus 99 ~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~ 177 (452)
T 3pbp_A 99 NVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDA 177 (452)
T ss_dssp CCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCS
T ss_pred cCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCc
Confidence 1122322 3679999999964 58999999999999999852 222 232 2
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CCCcEEEE
Q 005656 334 HTDRITDFCFSEDGKWLLSSG--MDGSLRIW 362 (685)
Q Consensus 334 h~~~I~~l~~spdg~~l~s~s--~Dg~I~iw 362 (685)
....|.+++|.+++-.|...+ ..|.|+-.
T Consensus 178 ~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 178 RVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 335789999999887666544 77877654
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.55 E-value=0.13 Score=46.72 Aligned_cols=136 Identities=10% Similarity=-0.073 Sum_probs=83.1
Q ss_pred cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCce------EEEeec-C-CceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656 253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL------KSRWEV-G-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~-~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 324 (685)
..+..++|+|+|.+.++ .+|.++-.+..+... ...+.. . .....+.|.|+|.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999998886555 678777777654211 112211 1 22578899999998888 569888777533
Q ss_pred Cee-------EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee------eEEe-eccc-eEEEEEcCCCC
Q 005656 325 LRM-------VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI------DAIH-VDVS-ITALSLSPNMD 389 (685)
Q Consensus 325 ~~~-------~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i------~~~~-~~~~-v~~v~~spdg~ 389 (685)
... ...-.+--..+..+.|.|+|.+.+.. |+.++-+.-+++... ..+- .... -+-+.|+|+|.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 110 11111112458999999999866665 787665555533311 1111 1112 45577999998
Q ss_pred eEEEE
Q 005656 390 VLATA 394 (685)
Q Consensus 390 ~Lat~ 394 (685)
+.++.
T Consensus 195 l~~v~ 199 (236)
T 1tl2_A 195 LFGVQ 199 (236)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88877
No 337
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.51 E-value=0.18 Score=52.51 Aligned_cols=189 Identities=12% Similarity=0.153 Sum_probs=115.2
Q ss_pred CCCEEEEEe-cCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEc--CCCCEEEEEEC-------CCe-------
Q 005656 213 CGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD--STNTLMISAGY-------HGD------- 275 (685)
Q Consensus 213 ~g~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~s~-------dg~------- 275 (685)
||+++++-. .+.+|...++..-+....+.- .....+.++.+- |+..+++.++. ||.
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~i-------Pn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~ 213 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITV-------PNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDE 213 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------TTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTST
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeC-------CCCcCcccccccccCCccEEEecceeeccCCCCCcccccCCh
Confidence 778888876 467888888887665444321 455667777765 56666666553 222
Q ss_pred -----EEEEECCCCceEEEeecCCceeEEEEeecCCEEEEEeCCC---------------eEEEEEcCC-------Ce--
Q 005656 276 -----IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---------------VIRLFDVVA-------LR-- 326 (685)
Q Consensus 276 -----i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~I~i~d~~~-------~~-- 326 (685)
....|..+.+...++..++....+...+++++.++.+.+. .+.++++.. |+
T Consensus 214 ~~y~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~ 293 (638)
T 3sbq_A 214 NSYTMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFI 293 (638)
T ss_dssp TEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCB
T ss_pred hhceEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeE
Confidence 1123344445545544455566666777888777665432 355555421 10
Q ss_pred -----eEEEEecCC---------------CCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCC------ce-------eeE
Q 005656 327 -----MVRKFEGHT---------------DRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA------RQ-------IDA 372 (685)
Q Consensus 327 -----~~~~~~~h~---------------~~I~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~------~~-------i~~ 372 (685)
-+..+.+.. .....+.++|||++++.++ .+.++.|+|+..- +. +..
T Consensus 294 ~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae 373 (638)
T 3sbq_A 294 TLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE 373 (638)
T ss_dssp CCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC
T ss_pred EECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee
Confidence 122232211 2345688999999998776 6789999998742 11 334
Q ss_pred EeeccceEEEEEcCCCCeEEEEEeCCCeEEEEEcCCC
Q 005656 373 IHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM 409 (685)
Q Consensus 373 ~~~~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~~~ 409 (685)
..........+|.++|....+-..|. .|.-|+....
T Consensus 374 ~e~GlGPlHt~Fd~~G~aYTtlfidS-qvvkWni~~a 409 (638)
T 3sbq_A 374 PELGLGPLHTTFDGRGNAYTTLFIDS-QVVKWNMEEA 409 (638)
T ss_dssp CBCCSCEEEEEECSSSEEEEEETTTT-EEEEEEHHHH
T ss_pred ccCCCcccEEEECCCCceEeeeeecc-eEEEEeccHH
Confidence 44555689999999994333444665 9999986543
No 338
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.46 E-value=0.15 Score=50.02 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=77.7
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 005656 213 CGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWDFK 282 (685)
Q Consensus 213 ~g~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~ 282 (685)
+++.+++|+.+ ..+.+||+.+......-.. + .....-..+.+ +++.++.|+.+ ..+.+||+.
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p-----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 192 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM-L-----TRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPE 192 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC-S-----SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC-C-----ccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCC
Confidence 56666666543 4688999987764432110 0 11111122222 56677777654 458899988
Q ss_pred CCceEEEeecC--CceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCCEEEEE
Q 005656 283 GRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWLLSS 353 (685)
Q Consensus 283 ~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~~l~s~ 353 (685)
+.+-...-..+ ..-.+++. -++.+++.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|
T Consensus 193 ~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~G 269 (308)
T 1zgk_A 193 RNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLG 269 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred CCeEeeCCCCCCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEc
Confidence 76544322221 11122222 266777777654 4689999987653321 1111111122222 67777777
Q ss_pred eCC-----CcEEEEEcCCCce
Q 005656 354 GMD-----GSLRIWDVILARQ 369 (685)
Q Consensus 354 s~D-----g~I~iwd~~~~~~ 369 (685)
+.+ ..+.+||+.+.+-
T Consensus 270 G~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 270 GYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp CBCSSCBCCEEEEEETTTTEE
T ss_pred CcCCCcccceEEEEcCCCCEE
Confidence 754 3477888776543
No 339
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.45 E-value=0.18 Score=49.67 Aligned_cols=205 Identities=8% Similarity=0.041 Sum_probs=103.9
Q ss_pred ceEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec-----C------CcEEEEECCCCcccccccccccc
Q 005656 178 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-----G------GWIERFNLQSGISRGSYLDMSER 246 (685)
Q Consensus 178 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----d------g~i~~~d~~~~~~~~~~~~~~~~ 246 (685)
..+..+|........ ...+.........+...++..+++|+. . ..+.+||..++.....-. .+.
T Consensus 13 ~~~~~yd~~~~~W~~---~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~- 87 (315)
T 4asc_A 13 EGAVAYDPAANECYC---ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP-LPS- 87 (315)
T ss_dssp TEEEEEETTTTEEEE---EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC-BSS-
T ss_pred CceEEECCCCCeEec---CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC-CCc-
Confidence 567777776654332 111111123334444567788888873 1 137889998876533211 110
Q ss_pred ccCCCCcCEEEEEEcCCCCEEEEEECC--------CeEEEEECCCCceEEEeecCC-ceeEEEEeecCCEEEEEeC-C--
Q 005656 247 SNYAHNGEVVGVACDSTNTLMISAGYH--------GDIKVWDFKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVAD-D-- 314 (685)
Q Consensus 247 ~~~~h~~~v~~l~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~-d-- 314 (685)
....| ..+.+ ++..++.|+.+ ..+.+||..+.+-...-..+. .....+...++++++.|+. +
T Consensus 88 ~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 88 PRCLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp CEESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred chhce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence 00111 12222 55666666632 358899998775433222221 1111222345677777765 2
Q ss_pred ---CeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCceeeEEeeccc---eEE
Q 005656 315 ---LVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWLLSSGMDG-----SLRIWDVILARQIDAIHVDVS---ITA 381 (685)
Q Consensus 315 ---g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~~l~s~s~Dg-----~I~iwd~~~~~~i~~~~~~~~---v~~ 381 (685)
..+.+||..+.+-... +......-..+.+ ++++++.|+.++ .+.+||..+.+-...-..+.+ ...
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 239 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL 239 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence 4689999987643221 1111111122223 677778887654 488899887643332222211 222
Q ss_pred EEEcCCCCeEEEEEeC
Q 005656 382 LSLSPNMDVLATAHVD 397 (685)
Q Consensus 382 v~~spdg~~Lat~~~d 397 (685)
+.+ ++++++.|+.+
T Consensus 240 ~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 240 VSL--VGTLYAIGGFA 253 (315)
T ss_dssp EEE--TTEEEEEEEEE
T ss_pred EEE--CCEEEEECCcc
Confidence 333 66777777654
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.40 E-value=0.072 Score=48.47 Aligned_cols=147 Identities=14% Similarity=-0.001 Sum_probs=85.3
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 283 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (685)
.+..++|+|+|...++ .+|.++..+..++....-+......-..+-.. -..+.|+|+|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5679999999986666 88888888876543322221000000001111 468899999987776 569998887643
Q ss_pred CceE------EEe-ecC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe------eEEEEe-cCCCCeEEEEEcCCCC
Q 005656 284 RDLK------SRW-EVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR------MVRKFE-GHTDRITDFCFSEDGK 348 (685)
Q Consensus 284 ~~~~------~~~-~~~-~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~------~~~~~~-~h~~~I~~l~~spdg~ 348 (685)
.... ..+ ... ..+..+.+.|+|.+.++. |+.++-....+.. ....+- +.-..-.-+.|+++|.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 2111 111 111 467899999999988887 7775433322111 011111 2222344567899887
Q ss_pred EEEEEeCCCcE
Q 005656 349 WLLSSGMDGSL 359 (685)
Q Consensus 349 ~l~s~s~Dg~I 359 (685)
+.+.. +|.+
T Consensus 195 l~~v~--~g~~ 203 (236)
T 1tl2_A 195 LFGVQ--GGKF 203 (236)
T ss_dssp EEEEE--TTEE
T ss_pred EEEEe--CCeE
Confidence 66655 6633
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.40 E-value=0.37 Score=50.15 Aligned_cols=144 Identities=12% Similarity=0.127 Sum_probs=84.4
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee---------cCCceeEEEEeec---CCEEEEEeC--------
Q 005656 254 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---------VGCSLVKIVYHRV---NGLLATVAD-------- 313 (685)
Q Consensus 254 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~---~~~l~~~~~-------- 313 (685)
..++++|.|+|+++++-...+.|++++..++....... .......++++|+ +..|+++..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 46799999999876665444579888866554332221 1245678999996 555554442
Q ss_pred -----CCeEEEEEcCCC-------eeEE-EEec-CCCCeEEEEEcCCCCEEEEEeCCC----------------------
Q 005656 314 -----DLVIRLFDVVAL-------RMVR-KFEG-HTDRITDFCFSEDGKWLLSSGMDG---------------------- 357 (685)
Q Consensus 314 -----dg~I~i~d~~~~-------~~~~-~~~~-h~~~I~~l~~spdg~~l~s~s~Dg---------------------- 357 (685)
...|.-|+.... +.+. .+.. .......|+|.|||.+.++.+..+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~ 187 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQEL 187 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHH
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccccc
Confidence 235666665421 1121 1221 123478999999998777655321
Q ss_pred --------cEEEEEcC-CCc-----------eeeEEe-eccceEEEEEcCCCCeEEEEEeC
Q 005656 358 --------SLRIWDVI-LAR-----------QIDAIH-VDVSITALSLSPNMDVLATAHVD 397 (685)
Q Consensus 358 --------~I~iwd~~-~~~-----------~i~~~~-~~~~v~~v~~spdg~~Lat~~~d 397 (685)
.=+||.+. .|. ....+. .+..+..++|+|+|.+.++-+..
T Consensus 188 ~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~ 248 (454)
T 1cru_A 188 NGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGP 248 (454)
T ss_dssp HTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECS
T ss_pred cccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEecCC
Confidence 11344443 233 223333 34458999999988766665543
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.28 E-value=0.92 Score=44.13 Aligned_cols=125 Identities=8% Similarity=0.059 Sum_probs=70.7
Q ss_pred EEccCCCEEEEEec-CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC--CeEEEEECCCCc
Q 005656 209 TISACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--GDIKVWDFKGRD 285 (685)
Q Consensus 209 ~~s~~g~~l~~g~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--g~i~iwd~~~~~ 285 (685)
+++++|+.|+..+. ...|++.++..+.....+ . +... ..+.|++.+|+-...+ ..|..-++....
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~---------~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY---------D--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETTTTEEEEEE---------C--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred EeeEECCEEEEEeCCCceEEEEECCCCCEEEEe---------C--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 35677888776655 568888888766543222 1 1111 2355888888877644 356666666554
Q ss_pred eEEEeecCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 005656 286 LKSRWEVGCSLVKIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 354 (685)
Q Consensus 286 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s 354 (685)
... +. ...+ ..++|++++|+-+.. .+.|...++......+...+ .+. .+++.+.+|+-..
T Consensus 219 ~~~-Lt-~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 219 PVV-LT-EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG---EFC--NINVTSQYVYFTD 280 (302)
T ss_dssp CEE-CS-CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES---CEE--EEEECSSEEEEEE
T ss_pred eEE-Ee-CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC---ccc--eEEEeCCEEEEEE
Confidence 332 22 2233 348888998876533 45777777765433332222 233 3444566666544
No 343
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.09 E-value=0.29 Score=56.98 Aligned_cols=204 Identities=17% Similarity=0.235 Sum_probs=116.1
Q ss_pred EccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecc
Q 005656 10 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 89 (685)
Q Consensus 10 fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~ 89 (685)
.+|..+ ++|.-. ..++.|+|+++...+.... ...+|.-=.|-.+..+-+.+ +..|.-|++.... .+.+.+.
T Consensus 73 MnP~~~-iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s---~P~k~fd 143 (1630)
T 1xi4_A 73 MNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNTVALVT--DNAVYHWSMEGES---QPVKMFD 143 (1630)
T ss_pred cCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCCCeeEEEc--CCeEEEeccCCCC---ccHHHHh
Confidence 466666 777654 6889999999888777665 45567777776555432222 4579999996532 2223333
Q ss_pred cC----CCCCeEEEEecCCCEEEEEe-------CCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeee
Q 005656 90 GH----SAPPLCIRFYANGRHILSAG-------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 158 (685)
Q Consensus 90 ~h----~~~v~~i~~~~~~~~l~s~s-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (685)
.| ...|..-..+++.++++..| -.|.+.+|+++.+... .-.++..... .+...... ....+.+|+
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ--~iegha~~F~-~~~~~~~~-~~~~l~~f~ 219 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASFA-QFKMEGNA-EESTLFCFA 219 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch--hhhHhHhhhh-eeccCCCC-CCceEEEEE
Confidence 33 45666677788888877544 3478888887654321 1111111110 11111000 001122222
Q ss_pred cccccccCCcceEEEEcCCceEEEEEcCcc-----ccCc---eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 005656 159 CAEIRERDWCNVVTCHMDTAQAYVWRLQNF-----VLGE---HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN 230 (685)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-----~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~~~d 230 (685)
... ...+.+++-.+... ...+ .+..+.........++.+++.-..+++-+.-|.+++||
T Consensus 220 ~~~-------------~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d 286 (1630)
T 1xi4_A 220 VRG-------------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYD 286 (1630)
T ss_pred Eec-------------CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEe
Confidence 111 11256666666433 1111 11112222345567888999999999999999999999
Q ss_pred CCCCccccc
Q 005656 231 LQSGISRGS 239 (685)
Q Consensus 231 ~~~~~~~~~ 239 (685)
+.+|..+..
T Consensus 287 ~~t~~~i~~ 295 (1630)
T 1xi4_A 287 LETGTCIYM 295 (1630)
T ss_pred cccchhhhh
Confidence 999987654
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.08 E-value=0.48 Score=55.22 Aligned_cols=231 Identities=10% Similarity=0.088 Sum_probs=127.2
Q ss_pred CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEecCCCcEEEEEecCCCCCCceeEecccCCCCCeEEEEecC
Q 005656 24 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 103 (685)
Q Consensus 24 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 103 (685)
..+|.|.|+.++..+.+-. -.--+.-.+|..+.+|--. ..++.|+|+++.. .++.. ....+|..-.|-.+
T Consensus 47 ~~~vvIidl~~~~~~~rrp----i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~----klks~-~~~e~VvfWkWis~ 116 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP----ISADSAIMNPASKVIALKA-GKTLQIFNIEMKS----KMKAH-TMTDDVTFWKWISL 116 (1630)
T ss_pred CceEEEEECCCCCCccccc----ccchhhccCCCcceEEEec-CCeEEEeehHHhh----hhccc-ccCCCceEEEecCC
Confidence 3478888988866442221 1122445678888777664 6799999998863 33322 23456777777654
Q ss_pred CCEEEEEeCCCceEEEEeecCceeeEechhhHHHHHhhccccccccccCceeeeecccccccCCcceEEEEcCCceEEEE
Q 005656 104 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 183 (685)
Q Consensus 104 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 183 (685)
. .|+..+ +..|.-|++........+-..+
T Consensus 117 ~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~------------------------------------------------- 145 (1630)
T 1xi4_A 117 N-TVALVT-DNAVYHWSMEGESQPVKMFDRH------------------------------------------------- 145 (1630)
T ss_pred C-eeEEEc-CCeEEEeccCCCCccHHHHhcc-------------------------------------------------
Confidence 3 333333 4579999986422111110000
Q ss_pred EcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEE-------ecCCcEEEEECCCCccccccccccccccCCCCcCEE
Q 005656 184 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-------TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 256 (685)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-------~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (685)
..-....|..-..+++.++++.. .-.|.+.+|....+..... .+|.+...
T Consensus 146 --------------~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~i---------egha~~F~ 202 (1630)
T 1xi4_A 146 --------------SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFA 202 (1630)
T ss_pred --------------hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhh---------hHhHhhhh
Confidence 00112445555666666665542 2357889998876544321 14444333
Q ss_pred EEEEcCC---CCEEEEEE---CCCeEEEEECCCC---ce-E-----EE-eec---CCceeEEEEeecCCEEEEEeCCCeE
Q 005656 257 GVACDST---NTLMISAG---YHGDIKVWDFKGR---DL-K-----SR-WEV---GCSLVKIVYHRVNGLLATVADDLVI 317 (685)
Q Consensus 257 ~l~~~~~---~~~l~s~s---~dg~i~iwd~~~~---~~-~-----~~-~~~---~~~i~~~~~~~~~~~l~~~~~dg~I 317 (685)
.+..... ...++.+. ..+.++|-++... .. . .. +.. ..-..++..++.-..+..-+.-|.|
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~ 282 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 282 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceE
Confidence 3332211 11222221 1267888887532 11 1 00 111 1334567778878888899999999
Q ss_pred EEEEcCCCeeEEEEecCCCCe
Q 005656 318 RLFDVVALRMVRKFEGHTDRI 338 (685)
Q Consensus 318 ~i~d~~~~~~~~~~~~h~~~I 338 (685)
++||+.|+.++..-+-....|
T Consensus 283 ~~~d~~t~~~i~~~ris~~~i 303 (1630)
T 1xi4_A 283 HLYDLETGTCIYMNRISGETI 303 (1630)
T ss_pred EEEecccchhhhhccccCCce
Confidence 999999998876544333333
No 345
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.88 E-value=0.52 Score=46.32 Aligned_cols=178 Identities=10% Similarity=0.026 Sum_probs=90.1
Q ss_pred eEEEEEcCccccCceeecCCCCCCCCeEEEEEccCCCEEEEEec----CC-------cEEEEECCCCccccccccccccc
Q 005656 179 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GG-------WIERFNLQSGISRGSYLDMSERS 247 (685)
Q Consensus 179 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----dg-------~i~~~d~~~~~~~~~~~~~~~~~ 247 (685)
.+..++........... + .........+...++..+++|+. ++ .+.+||..++.....-. .+.
T Consensus 25 ~~~~yd~~~~~W~~~~~-~--~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~-- 98 (318)
T 2woz_A 25 AAVAYDPMENECYLTAL-A--EQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP-LPS-- 98 (318)
T ss_dssp EEEEEETTTTEEEEEEE-C--TTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC-BSS--
T ss_pred ceEEECCCCCceecccC-C--ccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC-CCc--
Confidence 46677766554332111 1 11122233445567788888873 12 27889988776543211 000
Q ss_pred cCCCCcCEEEEEEcCCCCEEEEEECC-------CeEEEEECCCCceEEEeecCCc-eeEEEEeecCCEEEEEeC------
Q 005656 248 NYAHNGEVVGVACDSTNTLMISAGYH-------GDIKVWDFKGRDLKSRWEVGCS-LVKIVYHRVNGLLATVAD------ 313 (685)
Q Consensus 248 ~~~h~~~v~~l~~~~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~------ 313 (685)
.. .....+.+ +++.++.|+.+ ..+.+||..+.+-...-..+.+ ....+...++.+++.|+.
T Consensus 99 --~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 99 --AR-CLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKC 173 (318)
T ss_dssp --CB-CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCB
T ss_pred --cc-cccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCc
Confidence 11 11112222 56677777754 3588889887654433222211 111122246677777764
Q ss_pred CCeEEEEEcCCCeeEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCce
Q 005656 314 DLVIRLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWLLSSGMD-----GSLRIWDVILARQ 369 (685)
Q Consensus 314 dg~I~i~d~~~~~~~~~--~~~h~~~I~~l~~spdg~~l~s~s~D-----g~I~iwd~~~~~~ 369 (685)
-..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred cceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 23589999988653322 1111111122223 67777777643 3477888877643
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.84 E-value=0.19 Score=50.42 Aligned_cols=178 Identities=11% Similarity=0.024 Sum_probs=86.9
Q ss_pred CCCEEEEEec-C---------CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECC---------
Q 005656 213 CGNFAVLGTA-G---------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------- 273 (685)
Q Consensus 213 ~g~~l~~g~~-d---------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--------- 273 (685)
++..+++|+. + ..+.+||+.+......-... ........++. .+++.++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-----p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 137 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-----PMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFE 137 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-----SSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-----CcccccceEEE--ECCEEEEEeCcCCCcCccccc
Confidence 5677777765 2 46899999887654322110 01111112222 456777778754
Q ss_pred ------------------------------CeEEEEECCCCceEEEeecC--Cce-eEEEEeecCCEEEEEeC------C
Q 005656 274 ------------------------------GDIKVWDFKGRDLKSRWEVG--CSL-VKIVYHRVNGLLATVAD------D 314 (685)
Q Consensus 274 ------------------------------g~i~iwd~~~~~~~~~~~~~--~~i-~~~~~~~~~~~l~~~~~------d 314 (685)
..+.+||..+.+-...-... ... .+++. -++++++.|+. .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~ 216 (357)
T 2uvk_A 138 DLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRT 216 (357)
T ss_dssp HHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEEC
T ss_pred chhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCccc
Confidence 47899999877544432222 112 22232 35666677653 2
Q ss_pred CeEEEEEc--CCCeeE--EEEecCCCCeEEEEEcCCCCEEEEEeCC----------------------CcEEEEEcCCCc
Q 005656 315 LVIRLFDV--VALRMV--RKFEGHTDRITDFCFSEDGKWLLSSGMD----------------------GSLRIWDVILAR 368 (685)
Q Consensus 315 g~I~i~d~--~~~~~~--~~~~~h~~~I~~l~~spdg~~l~s~s~D----------------------g~I~iwd~~~~~ 368 (685)
..+.+||+ .+.+-. ..+..........+...++++++.|+.+ ..+.+||+.+.+
T Consensus 217 ~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~ 296 (357)
T 2uvk_A 217 DAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK 296 (357)
T ss_dssp CCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred CceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc
Confidence 45777877 433221 1111111111111223367777777632 257889988664
Q ss_pred eeeEEeeccc-eEEEEEcCCCCeEEEEEeCC
Q 005656 369 QIDAIHVDVS-ITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 369 ~i~~~~~~~~-v~~v~~spdg~~Lat~~~d~ 398 (685)
-...-..+.+ ....+...++++++.|+.++
T Consensus 297 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 297 WDKSGELSQGRAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp CEEEEECSSCCBSSEEEEETTEEEEEEEECG
T ss_pred eeeCCCCCCCcccceeEEeCCEEEEEeeeCC
Confidence 3332222222 11112223677777777654
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.57 E-value=0.92 Score=50.11 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=93.1
Q ss_pred CCCEEEEEecC------CcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCC--eEEEEECCCC
Q 005656 213 CGNFAVLGTAG------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG--DIKVWDFKGR 284 (685)
Q Consensus 213 ~g~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~ 284 (685)
++..+++|+.+ ..+.+||+.+......-. .+ .....| +++...++..++.||.++ .+.+||..+.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~-~p-~~R~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS-LS-HTRFRH-----SACSLPDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCC-CS-BCCBSC-----EEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCC-CC-CCcccc-----eEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence 67777777654 358899998865443211 00 011122 222323778888887654 6999999887
Q ss_pred ceEEEee---c--C-CceeEEEEeec-CCEEEEEeC--C-----CeEEEEEcCCCee-----EEEEecC--CCCe-EEEE
Q 005656 285 DLKSRWE---V--G-CSLVKIVYHRV-NGLLATVAD--D-----LVIRLFDVVALRM-----VRKFEGH--TDRI-TDFC 342 (685)
Q Consensus 285 ~~~~~~~---~--~-~~i~~~~~~~~-~~~l~~~~~--d-----g~I~i~d~~~~~~-----~~~~~~h--~~~I-~~l~ 342 (685)
.-...-. . . .....+.+..+ +.+++.|+. + ..+.+||+.+.+- ...+... .... .+++
T Consensus 524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~ 603 (695)
T 2zwa_A 524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK 603 (695)
T ss_dssp EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE
T ss_pred ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE
Confidence 6443321 1 1 22233555555 567777765 2 4689999987761 1222111 1111 1223
Q ss_pred EcCCCCEEEEEeC--------CCcEEEEEcCCCceeeEEeeccce----------EEEEEcCCCCeEEEEEe
Q 005656 343 FSEDGKWLLSSGM--------DGSLRIWDVILARQIDAIHVDVSI----------TALSLSPNMDVLATAHV 396 (685)
Q Consensus 343 ~spdg~~l~s~s~--------Dg~I~iwd~~~~~~i~~~~~~~~v----------~~v~~spdg~~Lat~~~ 396 (685)
...++++++.|+. ...|.+||..+.+-. ........ .+.+..++|++++.|+.
T Consensus 604 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 604 YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp EEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred EeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 3333777777774 345999999877543 22211111 23444456677777653
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.06 E-value=0.75 Score=50.86 Aligned_cols=109 Identities=11% Similarity=0.148 Sum_probs=56.6
Q ss_pred cCCCCEEEEEeCC----CcEEEEeCCCCeeeEEe-e-----cccccCeeEEEEeC-CCcEEEEecCCC------cEEEEE
Q 005656 12 SDGQPLLASGASS----GVISIWNLEKRRLQSVI-R-----EAHDNAIISLHFFA-NEPVLMSASADN------SIKMWI 74 (685)
Q Consensus 12 pdg~~~latg~~d----g~I~vwd~~~~~~~~~~-~-----~~h~~~V~~l~~sp-~~~~l~s~s~D~------~v~iWd 74 (685)
.++. +++.|+.+ ..+.+||..+++-...- . ......-.+++..+ ++.+++.||.++ .+.+||
T Consensus 396 ~~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 3455 77777743 46889998877543332 1 01111123344444 777888887543 455665
Q ss_pred ecCCCCCCceeEecccCCCCCeEEEEecCCCEEEEEeCCC--ceEEEEeecC
Q 005656 75 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--AFRLFSVIQD 124 (685)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~dg--~i~vwd~~~~ 124 (685)
..+. .+..+........ -.+++...+++.++.||.++ .+.+||+.++
T Consensus 475 ~~t~--~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 475 MKTR--EWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp TTTT--EEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred CCCC--cEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence 5443 2222222111111 12233324777888887654 5777776554
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.61 E-value=4.9 Score=41.60 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=59.7
Q ss_pred EEEEEEccCCC-CEEEEEeCCCcEEEEeCCCCe---eeEEee----c----ccccCeeEEEEeCC----CcEEEEecC--
Q 005656 5 VTALAFSSDGQ-PLLASGASSGVISIWNLEKRR---LQSVIR----E----AHDNAIISLHFFAN----EPVLMSASA-- 66 (685)
Q Consensus 5 V~~l~fspdg~-~~latg~~dg~I~vwd~~~~~---~~~~~~----~----~h~~~V~~l~~sp~----~~~l~s~s~-- 66 (685)
-+.|+|.|||. .+++ +...|.|++++..... .+..+. . +.......|+|+|+ +.+.++-+.
T Consensus 16 P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp EEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred ceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 36899999984 2554 4678999999754321 122211 0 11457889999996 443333221
Q ss_pred C----------CcEEEEEecCCCC------CCceeEecc--cCCCCCeEEEEecCCCEEEEEeCCC
Q 005656 67 D----------NSIKMWIFDTTDG------DPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDR 114 (685)
Q Consensus 67 D----------~~v~iWd~~~~~~------~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s~dg 114 (685)
+ ..|.-|.+..... ..+.+.... ........|.|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1344455543211 112222211 1223357899999998777766544
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.23 E-value=4 Score=39.06 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=79.3
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 283 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (685)
.|..++... .+.++-+ +|.|+.|-....-...... .....|..++...... ++ -. ||.|+.|-...
T Consensus 103 ~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~--------~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 103 GVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPA--------EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNY 168 (282)
T ss_dssp SEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCG--------GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCT
T ss_pred CeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCc--------cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCC
Confidence 344444433 3344445 8888888665422221110 2234577777654332 22 33 79999997654
Q ss_pred -CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005656 284 -RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 362 (685)
Q Consensus 284 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~spdg~~l~s~s~Dg~I~iw 362 (685)
+++-........|..++.... ..++. .||.|+.|-....-.+..-......|..++...+...+++ ||.|+.|
T Consensus 169 ~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~w 242 (282)
T 3qhy_B 169 FGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAW 242 (282)
T ss_dssp TSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEE
T ss_pred CCCCCCceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEe
Confidence 222111111245666655432 23333 5899999965432111100111235777776544333333 8999999
Q ss_pred EcCCCceeeEEeeccceEEEEEcC
Q 005656 363 DVILARQIDAIHVDVSITALSLSP 386 (685)
Q Consensus 363 d~~~~~~i~~~~~~~~v~~v~~sp 386 (685)
-......+.. ...|.+++-..
T Consensus 243 G~n~~gq~~v---~~~v~~iaaG~ 263 (282)
T 3qhy_B 243 GSSRTAPSSV---QSGVSSIEAGP 263 (282)
T ss_dssp STTCCCCGGG---SSCEEEEEECS
T ss_pred cCCCCccccC---CCCcEEEEECc
Confidence 7665433221 23455555444
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.07 E-value=12 Score=38.55 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=32.6
Q ss_pred cCeeEEEEeCCCc-EEEEecCCCcEEEEEecCCCCCCceeEecc---------cCCCCCeEEEEecC
Q 005656 47 NAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRS---------GHSAPPLCIRFYAN 103 (685)
Q Consensus 47 ~~V~~l~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~~---------~h~~~v~~i~~~~~ 103 (685)
..-..|+|.|++. .|+.+...|.|++++.+.. .....+..+. +.......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~-~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGE-IFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSC-BCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCC-eeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3457999999996 3444456788888853321 1111111111 11356788999996
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=91.45 E-value=19 Score=39.48 Aligned_cols=98 Identities=8% Similarity=0.032 Sum_probs=54.4
Q ss_pred cCCcEEEEECCCCccc----cccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCe--EEEEECCCCc-eEEE-eecC
Q 005656 222 AGGWIERFNLQSGISR----GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD--IKVWDFKGRD-LKSR-WEVG 293 (685)
Q Consensus 222 ~dg~i~~~d~~~~~~~----~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~--i~iwd~~~~~-~~~~-~~~~ 293 (685)
..|.|...++.++..- ..... .........+.++.+..+ ..+++...++. +.++|+.++. .... +..+
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp 393 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKI---LFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLP 393 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEE---EECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCC
T ss_pred CCCeEEEEECCcccccccccccceE---EECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCC
Confidence 4677888888764210 00000 001133456788888865 56677767764 6777776664 1222 3332
Q ss_pred --CceeEEEEeecCC-EEEEEeC---CCeEEEEEcC
Q 005656 294 --CSLVKIVYHRVNG-LLATVAD---DLVIRLFDVV 323 (685)
Q Consensus 294 --~~i~~~~~~~~~~-~l~~~~~---dg~I~i~d~~ 323 (685)
+.+......+++. ++++.+. -+.+..+|+.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 394 YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 4555556666665 4444332 3578888876
No 353
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=91.37 E-value=10 Score=36.09 Aligned_cols=155 Identities=13% Similarity=0.043 Sum_probs=97.4
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEEC---CCCccccccccccccccCCCCcCEEEEEEcC-CCCEEEEEECCCeEE
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNL---QSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIK 277 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~---~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~ 277 (685)
...+..+.......+++.-++.|.++.... ..+.... + ......|..+.... +..+++..+.+|.++
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--------l~~~e~i~~v~~~~~~~~~~v~~T~~G~iK 93 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--------KSREEKIVGAFIREKFGNRLLLATKKGYVK 93 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--------SSTTCCEEEEEEGGGSCSEEEEEETTSEEE
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--------CCCCCEEEEEECCcCCCCEEEEEeCCCEEE
Confidence 445666555556677888888898776543 2221111 1 13455676665421 467899999999999
Q ss_pred EEECCCCc------eEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC---------CeeEEEEecCCCCeEEEE
Q 005656 278 VWDFKGRD------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---------LRMVRKFEGHTDRITDFC 342 (685)
Q Consensus 278 iwd~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~ 342 (685)
...+..-. ....+..+..+..+........++..+..|.+..+.... |.....+. ....|..+.
T Consensus 94 r~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~ 172 (276)
T 3no0_A 94 KIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLR 172 (276)
T ss_dssp EEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEE
T ss_pred EEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEE
Confidence 98865421 122233345566666665666888899999988887643 11111222 235577666
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 343 FSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 343 ~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
..+++.+++..+..|.++...+..
T Consensus 173 ~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 173 IWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EESSCSEEEEEETTSCEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCcEEEeEHHH
Confidence 666677899999999999988753
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.12 E-value=13 Score=35.37 Aligned_cols=88 Identities=11% Similarity=-0.027 Sum_probs=45.7
Q ss_pred CCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceEEEeecCCceeEEEE
Q 005656 223 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVY 301 (685)
Q Consensus 223 dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~ 301 (685)
+|.|+.|-........... .-...|..++...... ++. .||.|+.|-.... ++-........|..++.
T Consensus 158 ~G~v~~wG~n~~gqlg~p~--------~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~ 226 (282)
T 3qhy_B 158 NGGVIAWGDNYFGQTTVPA--------EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIAS 226 (282)
T ss_dssp TTEEEEEECCTTSTTSCCG--------GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEE
T ss_pred CCEEEEecCCCCCCCCCce--------ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEc
Confidence 6888888655432221100 1234677777654433 333 4899999976532 22111111245666655
Q ss_pred eecCCEEEEEeCCCeEEEEEcCC
Q 005656 302 HRVNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 302 ~~~~~~l~~~~~dg~I~i~d~~~ 324 (685)
.... .++.. ||.|+.|-...
T Consensus 227 G~~h-~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 227 GEWY-SLALK--NGKVIAWGSSR 246 (282)
T ss_dssp CSSC-EEEEE--TTEEEEESTTC
T ss_pred CCCE-EEEEE--CCEEEEecCCC
Confidence 4332 33333 88888886544
No 355
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=89.92 E-value=15 Score=35.80 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=96.8
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEC---CCC------ccccccccccccccCCCCcCEEEEEEcC---CCCEEEEEE
Q 005656 204 AVKACTISACGNFAVLGTAGGWIERFNL---QSG------ISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAG 271 (685)
Q Consensus 204 ~v~~~~~s~~g~~l~~g~~dg~i~~~d~---~~~------~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~s 271 (685)
.+..+........+++-+..|.++.... ... .+...+. .......|.++..-+ +..+++..+
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l------~l~~~e~i~~~~~~~~~~~e~~~v~~T 116 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLL------AFQPEERIAQVIQIRGYTDAPYLVLAT 116 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHT------TCCTTCCEEEEEEESSTTSSSEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHcc------CCCCCCEEEEEEEeccCCCCCEEEEEc
Confidence 4555555556677777888887776653 322 1111111 112345566654433 467899999
Q ss_pred CCCeEEEEECCCC-------ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcC--CCee-------EE--EEec
Q 005656 272 YHGDIKVWDFKGR-------DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV--ALRM-------VR--KFEG 333 (685)
Q Consensus 272 ~dg~i~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~--~~~~-------~~--~~~~ 333 (685)
.+|.++.-.+..- .....+..+..+..+........++..+..|.+..+... .-.. ++ .+.
T Consensus 117 ~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~- 195 (327)
T 3uc1_A 117 RNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN- 195 (327)
T ss_dssp TTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-
T ss_pred CCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-
Confidence 9999999886532 111223334556666666666788888999998888776 2111 11 122
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 334 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 334 h~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
....|.++...+++.+|+.++..|.++.-.+..
T Consensus 196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 345577777766677899999999999887653
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.93 E-value=32 Score=39.32 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656 337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 374 (685)
Q Consensus 337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~ 374 (685)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888888999999999999999999999988764
No 357
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=86.59 E-value=25 Score=34.23 Aligned_cols=159 Identities=11% Similarity=0.017 Sum_probs=94.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCC---C------ccccccccccccccCCCCcCEEEEEEcC---CCCEEEE
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQS---G------ISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMIS 269 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---~------~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s 269 (685)
...+..+........++..+..|.++.+.... . .++..+. .......|.++..-+ ++.+++.
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i------~L~~~e~Iv~~~~~~~~~~~~~ll~ 111 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANII------PIDRDEEIIKAIPINDFELNGYFLF 111 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTS------CCCTTCCEEEEEEESCTTSSCEEEE
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhcc------CCCCCCEEEEEEEecccCCCceEEE
Confidence 34455555566677888889999888776532 1 1111111 112334566554333 2567899
Q ss_pred EECCCeEEEEECCC--------CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe-------eEEEEe-c
Q 005656 270 AGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-------MVRKFE-G 333 (685)
Q Consensus 270 ~s~dg~i~iwd~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-------~~~~~~-~ 333 (685)
++.+|.++...+.. +.....+.....+..+........++..+.+|.+..+....-. -++-+. .
T Consensus 112 ~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~ 191 (323)
T 1wp5_A 112 VTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK 191 (323)
T ss_dssp EETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC
T ss_pred EeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC
Confidence 99999999988742 1111123333556565555556678888999998888775321 122221 1
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC
Q 005656 334 HTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 334 h~~~I~~l~~spdg~-~l~s~s~Dg~I~iwd~~~ 366 (685)
....|.++...+++. .|++.+..|..+..++..
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 234566665544455 788888899888877754
No 358
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=86.52 E-value=27 Score=34.66 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=93.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCC---C------ccccccccccccccCCCCcCEEEEEEcC---CCCEEEE
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQS---G------ISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMIS 269 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---~------~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s 269 (685)
...+..+........++..+..|.++.+.... . .....+. .......|.++..-. .+.+++.
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll------~L~~~e~Iv~~~~~~~~~~~~~ll~ 118 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWI------PLESGERVQAVLPVREYADNRYVFM 118 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSC------CCCTTCCEEEEEEESCCCTTCEEEE
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhcc------CCCCCCEEEEEEEeccCCCCcEEEE
Confidence 44555666666667888889999888776432 1 1111111 112345566655432 4568999
Q ss_pred EECCCeEEEEECCCC-------ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCee-------EEEEe-cC
Q 005656 270 AGYHGDIKVWDFKGR-------DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-------VRKFE-GH 334 (685)
Q Consensus 270 ~s~dg~i~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-------~~~~~-~h 334 (685)
++..|.++...+..- .....+.....+..+........++..+.+|.+..++...-.. ++-+. ..
T Consensus 119 ~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~ 198 (370)
T 3l6v_A 119 ATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAK 198 (370)
T ss_dssp EETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT
T ss_pred EeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCC
Confidence 999999999886421 1112233345555555555566788888889888887643211 11111 12
Q ss_pred CCCeEEEEEcC-----------------------------------CCCEEEEEeCCCcEEEEEcCC
Q 005656 335 TDRITDFCFSE-----------------------------------DGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 335 ~~~I~~l~~sp-----------------------------------dg~~l~s~s~Dg~I~iwd~~~ 366 (685)
...|.++...+ ++.++++.+..|..+...+..
T Consensus 199 ~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 199 GEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp TCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHH
Confidence 34455554443 456899999999998888753
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.26 E-value=32 Score=34.27 Aligned_cols=136 Identities=10% Similarity=0.044 Sum_probs=87.9
Q ss_pred eEEEEECCCC--ceEEEeecC-------CceeEEEEe---ec----CCEEEEEe-CCCeEEEEEcCCCeeEEEEecC---
Q 005656 275 DIKVWDFKGR--DLKSRWEVG-------CSLVKIVYH---RV----NGLLATVA-DDLVIRLFDVVALRMVRKFEGH--- 334 (685)
Q Consensus 275 ~i~iwd~~~~--~~~~~~~~~-------~~i~~~~~~---~~----~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h--- 334 (685)
.|.+||+.+. ++++.+..+ +.+..+++. |. +.+++++. ..+.|.|||+.+++..+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778999998 888877654 457788887 22 34555554 4678999999998876655210
Q ss_pred ---------------CCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCC--------ceeeEEeec---cceEEEEE
Q 005656 335 ---------------TDRITDFCFSED----GKWLLSSGMDGSLRIWDVILA--------RQIDAIHVD---VSITALSL 384 (685)
Q Consensus 335 ---------------~~~I~~l~~spd----g~~l~s~s~Dg~I~iwd~~~~--------~~i~~~~~~---~~v~~v~~ 384 (685)
...|..|++||+ +++|.-....+ -++|.+++. ..+..+... +.-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 136888999998 78888777655 355655432 222223222 22445677
Q ss_pred c-CCCCeEEEEEeCCCeEEEEEcCC-CcCC
Q 005656 385 S-PNMDVLATAHVDQNGVYLWVNRC-MFSG 412 (685)
Q Consensus 385 s-pdg~~Lat~~~d~~~I~lW~~~~-~~~~ 412 (685)
. .+| .|..+-.+.+.|..|+... .|.+
T Consensus 283 D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~ 311 (381)
T 3q6k_A 283 DPKTK-VIFFAEANTKQVSCWNTQKMPLRM 311 (381)
T ss_dssp CTTTC-EEEEEESSSSEEEEEETTSCSBCG
T ss_pred eCCCC-eEEEEeccCCeEEEEeCCCCcccc
Confidence 6 455 4555555666999999776 6643
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=84.66 E-value=27 Score=33.01 Aligned_cols=122 Identities=12% Similarity=0.032 Sum_probs=66.9
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005656 202 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 281 (685)
Q Consensus 202 ~~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 281 (685)
...+..+........++..+..|.++.++...-.....-..............|.++...+++..++..+..|.++...+
T Consensus 115 gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~ 194 (276)
T 3no0_A 115 GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISH 194 (276)
T ss_dssp TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEH
Confidence 34555555566667899999999999987643221110000000011123456777666566778888899999988876
Q ss_pred CCC-------ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEE--EEcC
Q 005656 282 KGR-------DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL--FDVV 323 (685)
Q Consensus 282 ~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i--~d~~ 323 (685)
..- +-...+.....+..+....+...++..+.+|.+.. ++..
T Consensus 195 ~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 195 EEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp GGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred HHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 421 11222222334444333333345555666666665 6554
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.16 E-value=36 Score=33.16 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=91.0
Q ss_pred CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC--CC------
Q 005656 213 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK--GR------ 284 (685)
Q Consensus 213 ~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~--~~------ 284 (685)
+..++++.+.+|.++...+..-..... ........ .....+..+........++..+..|.+..+... .-
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G~~~i~l-ke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~ 185 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRS-GGIVAVNL-RDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA 185 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCS-SCEESCBC-CTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhcccc-CceEEEEE-CCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Confidence 578999999999999988754322111 00000011 224556666555556678888889998888766 21
Q ss_pred ---ceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-------eeEEEEe--cCCCCeEEEEEcCCCCEEEE
Q 005656 285 ---DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-------RMVRKFE--GHTDRITDFCFSEDGKWLLS 352 (685)
Q Consensus 285 ---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-------~~~~~~~--~h~~~I~~l~~spdg~~l~s 352 (685)
...-.+..+..|..+...+++..++..+..|.++.-.+..- +-+..+. .-.+.+..+....+...++.
T Consensus 186 a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 186 TSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp SBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred CCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence 11112333466777777666778999999999988876432 2222222 21344555544444556666
Q ss_pred EeCCCcEEEEEcC
Q 005656 353 SGMDGSLRIWDVI 365 (685)
Q Consensus 353 ~s~Dg~I~iwd~~ 365 (685)
.+.+|.+.-++..
T Consensus 266 ~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 266 VTSGGGVIRTAAR 278 (327)
T ss_dssp EEGGGCEEEEEGG
T ss_pred EcCCCeEEEEehh
Confidence 7777877777654
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.98 E-value=70 Score=36.44 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=34.5
Q ss_pred cCEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec
Q 005656 253 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 292 (685)
Q Consensus 253 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (685)
..+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3577788888888999999999999999999998887654
No 363
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=82.08 E-value=37 Score=32.65 Aligned_cols=156 Identities=10% Similarity=0.098 Sum_probs=94.8
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCC---C------ccccccccccccccCCCCcCEEEEEEc---CCCCEEEEE
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQS---G------ISRGSYLDMSERSNYAHNGEVVGVACD---STNTLMISA 270 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---~------~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~~l~s~ 270 (685)
..+..+........++..+..|.++.+.... . .+...+. .......|.++..- .++.+++..
T Consensus 42 D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l------~l~~~e~i~~~~~~~~~~~~~~ll~~ 115 (307)
T 1zi0_A 42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLL------PLEQDERITAILPVTEFEEGVKVFMA 115 (307)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTS------CCCTTCCEEEEEEESCCCTTCEEEEE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhcc------CCCCCCEEEEEEEeccCCCCcEEEEE
Confidence 4455555555667888889999888776532 1 1111111 11334456666442 345678899
Q ss_pred ECCCeEEEEECCC-------CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCe-------eEE--EEecC
Q 005656 271 GYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-------MVR--KFEGH 334 (685)
Q Consensus 271 s~dg~i~iwd~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-------~~~--~~~~h 334 (685)
+..|.++...+.. +.....+..+..+..+........++..+.+|.+..++...-. -++ .+. .
T Consensus 116 T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~ 194 (307)
T 1zi0_A 116 TANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-E 194 (307)
T ss_dssp ETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-T
T ss_pred eCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-C
Confidence 9999999987642 1111122233556666555556678888889988888764321 111 122 2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005656 335 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 365 (685)
Q Consensus 335 ~~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~ 365 (685)
...|.++...+++..|++.+..|.++-.++.
T Consensus 195 ~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 195 GDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 3457776655566778888999999888774
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.44 E-value=43 Score=32.30 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=67.5
Q ss_pred CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-------c
Q 005656 213 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------D 285 (685)
Q Consensus 213 ~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------~ 285 (685)
++.+++..+..|.++...+..-....... ... ......+.+.++.....+..++..+.+|.+..+....- +
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G-~~~-i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~ 190 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRG-VIV-IKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQ 190 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----C-EEC-BCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBC
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCc-EEE-EecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCC
Confidence 46788999999999988774322111000 000 01123456666666555667888889999988886531 1
Q ss_pred eEE--EeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656 286 LKS--RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 286 ~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 324 (685)
-+. .+..+..+..+....++..+++.+..|..+..++..
T Consensus 191 Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 191 GVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 112 222345566665555667788889999998888754
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=78.38 E-value=50 Score=31.84 Aligned_cols=158 Identities=8% Similarity=0.070 Sum_probs=97.8
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCC---------CccccccccccccccCCCCcCEEEEEEcC---CCCEEEEE
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQS---------GISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISA 270 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---------~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~ 270 (685)
..+..+........+++.+..|.++.+.... |....... .......|.++...+ .+.+++..
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l------~l~~~e~i~~~~~~~~~~~~~~ll~~ 120 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELI------NLGDQEEILTIKNSKDLTDDAYLLLT 120 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTS------CCCTTCCEEEEEEESCCCTTCEEEEE
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhcc------CCCCCCEEEEEEEeccCCCCCEEEEE
Confidence 4455555555667888889999988886542 11111111 112334555554433 46678888
Q ss_pred ECCCeEEEEECCC-------CceEEEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-------eeEEEEec-CC
Q 005656 271 GYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-------RMVRKFEG-HT 335 (685)
Q Consensus 271 s~dg~i~iwd~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-------~~~~~~~~-h~ 335 (685)
+..|.++...+.. |.....+..+..+..+.....+..++..+.+|.+..+....- +-++.+.- ..
T Consensus 121 T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~ 200 (312)
T 1suu_A 121 TASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG 200 (312)
T ss_dssp ETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT
T ss_pred eCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC
Confidence 9999999888742 222222333456666666655678888999999998887541 11222211 23
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005656 336 DRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 336 ~~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
..|..+..-.++..|++.+..|..+...+..
T Consensus 201 d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 201 DLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4566666655667788889999999988753
No 366
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.79 E-value=59 Score=32.37 Aligned_cols=135 Identities=7% Similarity=-0.114 Sum_probs=63.6
Q ss_pred CeEEEEEccC-CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCC-CCEEEEEEC---------
Q 005656 204 AVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGY--------- 272 (685)
Q Consensus 204 ~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~--------- 272 (685)
.+.++++.|. ...+++++..| |+..+-. +..-..+.. . ........+.++.++|. ...++.+..
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~-G~tW~~~~~-~--l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~ 307 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMDRR-EGVWKRIGD-A--MPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRV 307 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEETT-TTEEECGGG-G--SCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCC
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeCCC-CCcceECCC-C--CCCCCccceEEEEECCCCCCEEEEEeccCCccceee
Confidence 4788888885 46777776555 5554432 221111110 0 00000134567888763 334444431
Q ss_pred --CCeEEEEECCC-CceEEEeec--CC--c-----eeEEEEeecC-CEEEEEeCCCeEEEEEcCCCeeEEEEecCCCCeE
Q 005656 273 --HGDIKVWDFKG-RDLKSRWEV--GC--S-----LVKIVYHRVN-GLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT 339 (685)
Q Consensus 273 --dg~i~iwd~~~-~~~~~~~~~--~~--~-----i~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~ 339 (685)
++...+|.... ++.-..+.. +. . ...++++|.. ..|++++.++.|..- .+.++.-..+..+-..+.
T Consensus 308 ~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp~~~ 386 (394)
T 3b7f_A 308 SPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHLPHIY 386 (394)
T ss_dssp BCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSCSCEE
T ss_pred cCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCCCCee
Confidence 23344554443 332222211 11 0 1357777753 456666666655432 233444444444445577
Q ss_pred EEEEc
Q 005656 340 DFCFS 344 (685)
Q Consensus 340 ~l~~s 344 (685)
++.|.
T Consensus 387 ~v~~~ 391 (394)
T 3b7f_A 387 AVQSA 391 (394)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77663
No 367
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=75.21 E-value=62 Score=31.34 Aligned_cols=110 Identities=10% Similarity=0.072 Sum_probs=64.7
Q ss_pred CCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCCc-------e
Q 005656 214 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-------L 286 (685)
Q Consensus 214 g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-------~ 286 (685)
+.+++..+.+|.++...+..-.....-..... ......+.+..+........++..+.+|.+..++...-. -
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~a-i~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~G 184 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTG-INLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG 184 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEEC-SCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCceEE-EEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcC
Confidence 66899999999999988753222110000000 001222556665555555678888889998888764211 1
Q ss_pred EE--EeecCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCC
Q 005656 287 KS--RWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVA 324 (685)
Q Consensus 287 ~~--~~~~~~~i~~~~~~~~~~-~l~~~~~dg~I~i~d~~~ 324 (685)
+. .+..+..+..+...+++. .+++.+..|..+..++..
T Consensus 185 V~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 185 VKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 11 222335566665545555 788888888888877754
No 368
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=74.28 E-value=1.1e+02 Score=33.57 Aligned_cols=148 Identities=13% Similarity=0.104 Sum_probs=79.0
Q ss_pred EEEEEcCCCC-----EEEEEECC---CeEEEEECCC--CceEEEeecCCceeEEEEeecCCEEEEE----------eCCC
Q 005656 256 VGVACDSTNT-----LMISAGYH---GDIKVWDFKG--RDLKSRWEVGCSLVKIVYHRVNGLLATV----------ADDL 315 (685)
Q Consensus 256 ~~l~~~~~~~-----~l~s~s~d---g~i~iwd~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~----------~~dg 315 (685)
.+...+.+++ .+++.+.+ ..+.+.+... ++. ..+..+... .+..+.++.+++.. ...+
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (711)
T 4hvt_A 243 VSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA-TLQGSFKEYVFWLLRSDWKFKSHNIKAG 320 (711)
T ss_dssp EEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC-EEEEEETTEEEEECSSCEEETTEEECTT
T ss_pred EEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc-eEeeeECCEEEEEECcccccccccCCCC
Confidence 3455566665 24444422 3466666553 332 223322222 12344555555532 2467
Q ss_pred eEEEEEcCCCe-------eEEE-Ee-cCCCCeEEEEEcCCCCEEEEEeCCCc--EEEEEcCCCc-eeeE-Eeec--cceE
Q 005656 316 VIRLFDVVALR-------MVRK-FE-GHTDRITDFCFSEDGKWLLSSGMDGS--LRIWDVILAR-QIDA-IHVD--VSIT 380 (685)
Q Consensus 316 ~I~i~d~~~~~-------~~~~-~~-~h~~~I~~l~~spdg~~l~s~s~Dg~--I~iwd~~~~~-~i~~-~~~~--~~v~ 380 (685)
.|.+.|+.++. ..+. +. .....+..+.|..+ .++++...++. |.++++.++. .+.. +..+ ..+.
T Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~ 399 (711)
T 4hvt_A 321 SLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIF 399 (711)
T ss_dssp CEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEE
T ss_pred eEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEE
Confidence 89999987642 2233 32 22345778888875 56777777764 6777776664 2333 4333 3477
Q ss_pred EEEEcCCCCeEEEEEeC---CCeEEEEEc
Q 005656 381 ALSLSPNMDVLATAHVD---QNGVYLWVN 406 (685)
Q Consensus 381 ~v~~spdg~~Lat~~~d---~~~I~lW~~ 406 (685)
.+.+++++..++....+ -..++.++.
T Consensus 400 ~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 400 GMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 77777877655444322 135666654
No 369
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=72.23 E-value=81 Score=31.33 Aligned_cols=179 Identities=9% Similarity=-0.023 Sum_probs=82.7
Q ss_pred CCeEEEEEccC-CCEEEEEecCCcEEEEECCCCccccccccccccc-cC----CCCcCEEEEEEcCC-CCEEEEEECCCe
Q 005656 203 TAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS-NY----AHNGEVVGVACDST-NTLMISAGYHGD 275 (685)
Q Consensus 203 ~~v~~~~~s~~-g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~----~h~~~v~~l~~~~~-~~~l~s~s~dg~ 275 (685)
..+.++.+.|. .+.+++++..+.|+..+-. |..-..+....... .. .....+.++.++|. ...++.+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 45778888873 4566666665555544322 22111111000000 00 00135889999986 35566665444
Q ss_pred EEEEECCCCceEEEeec--C----CceeEEEEeec-CCEEEEEeC-----------CCeEEEEEcCC-CeeEEEEe-cCC
Q 005656 276 IKVWDFKGRDLKSRWEV--G----CSLVKIVYHRV-NGLLATVAD-----------DLVIRLFDVVA-LRMVRKFE-GHT 335 (685)
Q Consensus 276 i~iwd~~~~~~~~~~~~--~----~~i~~~~~~~~-~~~l~~~~~-----------dg~I~i~d~~~-~~~~~~~~-~h~ 335 (685)
|...+- .++.-..+.. . ..+..+.++|. ...+.++.. ++...+|...+ ++.-..+. +-.
T Consensus 255 l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 255 IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 544432 2222222221 1 23456777763 334444431 23345555443 33333322 111
Q ss_pred C-------CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeEEeeccc-eEEEEEc
Q 005656 336 D-------RITDFCFSED-GKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLS 385 (685)
Q Consensus 336 ~-------~I~~l~~spd-g~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~v~~s 385 (685)
. ....++++|. ...|+.++.++.|..- ...|+.-..+..+-+ +.+|.|.
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSCSCEEEEEEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCCCCeeEEEEe
Confidence 1 1135788874 3456666656655432 234544444443333 6666653
No 370
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=72.00 E-value=83 Score=31.32 Aligned_cols=149 Identities=13% Similarity=0.155 Sum_probs=76.2
Q ss_pred CCEEEEEecCCcEEEEECCCCcccccc----ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-c---
Q 005656 214 GNFAVLGTAGGWIERFNLQSGISRGSY----LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-D--- 285 (685)
Q Consensus 214 g~~l~~g~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~--- 285 (685)
..+.++-+.+|.|+.|-....-....- ...+..........|..++........+....||.|+.|-.... +
T Consensus 168 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~ 247 (389)
T 3kci_A 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGR 247 (389)
T ss_dssp SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSS
T ss_pred cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCC
Confidence 456666677888888865431110000 00000000112345777776543456666678999999975421 1
Q ss_pred -------eEEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-----------eeEEEEec-CCCCeEEEEEc
Q 005656 286 -------LKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----------RMVRKFEG-HTDRITDFCFS 344 (685)
Q Consensus 286 -------~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-----------~~~~~~~~-h~~~I~~l~~s 344 (685)
....+.. ...+..++.. ....++-..+|.|+.|-.... .....+.. ....|..++..
T Consensus 248 g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G 325 (389)
T 3kci_A 248 GGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG 325 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC
T ss_pred CCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec
Confidence 1111111 1234444443 344555577899999965321 11111221 12346666653
Q ss_pred CCCCEEEEEeCCCcEEEEEcCC
Q 005656 345 EDGKWLLSSGMDGSLRIWDVIL 366 (685)
Q Consensus 345 pdg~~l~s~s~Dg~I~iwd~~~ 366 (685)
....+....||.|+.|-...
T Consensus 326 --~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 326 --SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp --SSEEEEEETTCCEEEEECCT
T ss_pred --cCeEEEECCCCCEEEeeCCC
Confidence 34555567899999997653
No 371
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=71.80 E-value=1.2e+02 Score=33.24 Aligned_cols=108 Identities=12% Similarity=0.078 Sum_probs=58.4
Q ss_pred CcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeec--c----cccCeeEEEEeCCC--cEEEEecC-C-----C
Q 005656 3 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE--A----HDNAIISLHFFANE--PVLMSASA-D-----N 68 (685)
Q Consensus 3 ~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~--~----h~~~V~~l~~sp~~--~~l~s~s~-D-----~ 68 (685)
+.|.+|+|+|.....+.++...|.|..++-....-. .+.. + ....|.+|++.|.. .+++..+. . +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~-~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWI-PLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEE-ECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEE-ECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 379999999985445666776676766653333222 2221 1 12469999999843 34443321 1 1
Q ss_pred cEEEEEecCCCCCCceeEecc---cC---CCCCeEEEEecC-CCEEEEEe
Q 005656 69 SIKMWIFDTTDGDPRLLRFRS---GH---SAPPLCIRFYAN-GRHILSAG 111 (685)
Q Consensus 69 ~v~iWd~~~~~~~~~~~~~~~---~h---~~~v~~i~~~~~-~~~l~s~s 111 (685)
...||.-..+...++.+.... ++ ...+..++++|. ...++.+.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 356675554444444433210 00 112467899885 34555555
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=70.34 E-value=1.4e+02 Score=33.18 Aligned_cols=109 Identities=9% Similarity=0.035 Sum_probs=57.3
Q ss_pred CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeeeEEeecc------cccCeeEEEEeCCC-cEEEEecCCCc----E
Q 005656 2 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA------HDNAIISLHFFANE-PVLMSASADNS----I 70 (685)
Q Consensus 2 ~~~V~~l~fspdg~~~latg~~dg~I~vwd~~~~~~~~~~~~~------h~~~V~~l~~sp~~-~~l~s~s~D~~----v 70 (685)
.+.|.+|+++|.....+.+++..|.|...+ +.++.-..+... ....|.++++.|.. ..++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 367999999997544677777777776655 233322223211 23479999999853 33433332211 4
Q ss_pred EEEEecCCCCCCceeEeccc------CCCCCeEEEEecC-CCEEEEEe
Q 005656 71 KMWIFDTTDGDPRLLRFRSG------HSAPPLCIRFYAN-GRHILSAG 111 (685)
Q Consensus 71 ~iWd~~~~~~~~~~~~~~~~------h~~~v~~i~~~~~-~~~l~s~s 111 (685)
.||.-..+...++.+..-.. ....+..++++|. ...++.+.
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~ 140 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT 140 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe
Confidence 45544433333333321100 0113567888875 34455554
No 373
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=68.08 E-value=98 Score=30.61 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=62.8
Q ss_pred CCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC--------
Q 005656 213 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------- 284 (685)
Q Consensus 213 ~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------- 284 (685)
.+.+++..+..|.++...+..-.....- ....... .-.+.+..+........++..+.+|.+..++...-
T Consensus 112 ~~~~ll~~T~~G~vKrt~l~e~~~~~~~-G~~ai~L-~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~ 189 (370)
T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLAR-GKIAINL-DEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTAT 189 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCTT-CEESSCC-CTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred CCcEEEEEeCCCeEEEeEHHHhhcccCC-ceEEEEe-CCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCC
Confidence 4569999999999999886533221100 0000011 22445555555555567888888898888875421
Q ss_pred -ceEEEeecCCceeEEEEee-----------------------------------cCCEEEEEeCCCeEEEEEcCC
Q 005656 285 -DLKSRWEVGCSLVKIVYHR-----------------------------------VNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 285 -~~~~~~~~~~~i~~~~~~~-----------------------------------~~~~l~~~~~dg~I~i~d~~~ 324 (685)
...-.+.....+..+...+ ++..+++.+..|..+...+..
T Consensus 190 GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 190 GVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp CEECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGG
T ss_pred CeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHH
Confidence 1111222234555555444 345788888888888777653
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=68.02 E-value=87 Score=30.01 Aligned_cols=122 Identities=13% Similarity=0.021 Sum_probs=64.7
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 282 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 282 (685)
..+..+........++..+.+|.+..++...-....................|.++....++..+++.+..|.++-.++.
T Consensus 146 d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 146 DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 44555555555667889999999999887542221110000000111334567777665556678888889999888763
Q ss_pred CC-------ceEEE--eec-CCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 005656 283 GR-------DLKSR--WEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 283 ~~-------~~~~~--~~~-~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~ 324 (685)
.- +-... +.. ...+..+....+...++..+.+|.+.-+++..
T Consensus 226 e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 226 EYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp GSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred HhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 21 11111 111 13444433333344455555566555555443
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.02 E-value=17 Score=38.60 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CcEEEEEcCCCceeeEEeecc--ceEEEEEcCCCCeEEEEEe
Q 005656 338 ITDFCFSEDGKWLLSSGMD------------GSLRIWDVILARQIDAIHVDV--SITALSLSPNMDVLATAHV 396 (685)
Q Consensus 338 I~~l~~spdg~~l~s~s~D------------g~I~iwd~~~~~~i~~~~~~~--~v~~v~~spdg~~Lat~~~ 396 (685)
.-.|+|+|+|++++.-..+ ..+.+.+..+++..+.+..+. .++.++|+||++.|++.-.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence 4578999999966654432 235556667787776666544 4999999999998877643
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=65.25 E-value=26 Score=36.85 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=45.0
Q ss_pred CCeEEEEEcCCCCEEEEEeC------------CCcEEEEEcCCCceeeEEeec--cceEEEEEcCCCCeEEEEEeCC
Q 005656 336 DRITDFCFSEDGKWLLSSGM------------DGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQ 398 (685)
Q Consensus 336 ~~I~~l~~spdg~~l~s~s~------------Dg~I~iwd~~~~~~i~~~~~~--~~v~~v~~spdg~~Lat~~~d~ 398 (685)
.....|+|.++|.+.++... ...|..++..++++...+..+ ..++.++||||++.|+++-..-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQHP 552 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHP 552 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEEST
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeCC
Confidence 34678999999987664322 125666676678776666543 3489999999999998886553
No 377
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.92 E-value=2.1e+02 Score=33.31 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEe
Q 005656 337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 374 (685)
Q Consensus 337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~ 374 (685)
.+.+++..++..++++-+.|+++|||++.++.++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 35566777888999999999999999999999988764
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.25 E-value=1.3e+02 Score=34.97 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=32.4
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec
Q 005656 254 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 292 (685)
Q Consensus 254 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (685)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 445556667788999999999999999999999887654
No 379
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.18 E-value=20 Score=38.16 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=41.9
Q ss_pred EEEEEccCCCCEEEEEeCC------------CcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEe
Q 005656 6 TALAFSSDGQPLLASGASS------------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64 (685)
Q Consensus 6 ~~l~fspdg~~~latg~~d------------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~ 64 (685)
--|+|+|+|. +++.-..+ ..+.+.+..+++....+...-...++.++|+||++.|+..
T Consensus 479 DNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4578999998 55543211 2466667778888777774556789999999999877764
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=61.33 E-value=1.3e+02 Score=29.77 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=96.9
Q ss_pred CCCEEEEEecCCcEEEEECCCCcccccc----ccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECCCC-c--
Q 005656 213 CGNFAVLGTAGGWIERFNLQSGISRGSY----LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-D-- 285 (685)
Q Consensus 213 ~g~~l~~g~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~-- 285 (685)
...+.++-+.+|.|+.|-....-....- ...+..........+..++++......+.-..||.|+.|-.... +
T Consensus 61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG 140 (389)
T 3kci_A 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCC
Confidence 3456666678888888864432111000 00000000012234555666666667777788999999965421 0
Q ss_pred --------eEEEeec--CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-e----------eEEEEec-CCCCeEEEEE
Q 005656 286 --------LKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-R----------MVRKFEG-HTDRITDFCF 343 (685)
Q Consensus 286 --------~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~----------~~~~~~~-h~~~I~~l~~ 343 (685)
....+.. ...|..++. .....++...+|.|+.|-.... + ....+.. ....|..++.
T Consensus 141 ~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~ 218 (389)
T 3kci_A 141 HGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIAC 218 (389)
T ss_dssp SSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred CCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEE
Confidence 0111111 123444443 3455666677899999965321 0 1111111 2335777776
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC-ce--------ee--EEee--ccceEEEEEcCCCCeEEEEEeCCCeEEEEEcC
Q 005656 344 SEDGKWLLSSGMDGSLRIWDVILA-RQ--------ID--AIHV--DVSITALSLSPNMDVLATAHVDQNGVYLWVNR 407 (685)
Q Consensus 344 spdg~~l~s~s~Dg~I~iwd~~~~-~~--------i~--~~~~--~~~v~~v~~spdg~~Lat~~~d~~~I~lW~~~ 407 (685)
.....+.+.-..||.|+.|-.... ++ .. .+.. ...|..++... .+.++-..++ .|+.|-..
T Consensus 219 G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G-~v~~wG~n 292 (389)
T 3kci_A 219 GSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSG-AVYTWGKG 292 (389)
T ss_dssp CCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTS-CEEEEECC
T ss_pred cCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCC-eEEEEeCC
Confidence 543456667778999999975431 10 01 1111 11266665543 3333334565 89999754
No 381
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=56.55 E-value=1.6e+02 Score=29.19 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=43.7
Q ss_pred CCeEEEEEccC----CCEEEEEecCC-cEEEEE---CCCCccccccccccccccCCCCcCEEEEEEc-CCCCEEEEEECC
Q 005656 203 TAVKACTISAC----GNFAVLGTAGG-WIERFN---LQSGISRGSYLDMSERSNYAHNGEVVGVACD-STNTLMISAGYH 273 (685)
Q Consensus 203 ~~v~~~~~s~~----g~~l~~g~~dg-~i~~~d---~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~s~d 273 (685)
..+..++++|+ ++.|+...-.+ .++... ++.......+... ...+....-..++++ .+|..+++--..
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~---G~kg~~s~~~~~~~D~~~G~ly~~~~~~ 296 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL---GNRGKYNDAIALAYDPKTKVIFFAEANT 296 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE---EECCTTCCEEEEEECTTTCEEEEEESSS
T ss_pred cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe---eecCCCCCcceEEEeCCCCeEEEEeccC
Confidence 45778888887 77777776655 344433 2222211111100 011212344566776 567666666678
Q ss_pred CeEEEEECCC
Q 005656 274 GDIKVWDFKG 283 (685)
Q Consensus 274 g~i~iwd~~~ 283 (685)
..|..|+..+
T Consensus 297 ~aI~~w~~~~ 306 (381)
T 3q6k_A 297 KQVSCWNTQK 306 (381)
T ss_dssp SEEEEEETTS
T ss_pred CeEEEEeCCC
Confidence 8999999875
No 382
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=55.73 E-value=44 Score=35.16 Aligned_cols=59 Identities=10% Similarity=0.213 Sum_probs=41.3
Q ss_pred EEEEEEccCCCCEEE-EEeC-----------CCcEEEEeCCCCeeeEEeecccccCeeEEEEeCCCcEEEEe
Q 005656 5 VTALAFSSDGQPLLA-SGAS-----------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 64 (685)
Q Consensus 5 V~~l~fspdg~~~la-tg~~-----------dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~ 64 (685)
...|.|+++|. +.+ |=.. ...|..++..++++...+.......++.++|+||++.|+.+
T Consensus 478 PDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45789999998 554 3211 12577777778887766652234679999999999977765
No 383
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=49.22 E-value=19 Score=30.14 Aligned_cols=58 Identities=14% Similarity=0.278 Sum_probs=46.2
Q ss_pred hHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcccc
Q 005656 565 FSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETV 642 (685)
Q Consensus 565 ~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~~~l 642 (685)
...++++|.+...+.|+..+.+|++ +..-.+|++|-..|....+-. ..++|..|-..+
T Consensus 76 ~~~Vl~VL~siK~sdI~~~v~~L~~---------------e~~D~LMKYiYkGm~~~~~~~-----~~~LL~WHEKl~ 133 (151)
T 1k8k_G 76 GSIVLKVLISFKANDIEKAVQSLDK---------------NGVDLLMKYIYKGFESPSDNS-----SAVLLQWHEKAL 133 (151)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHTSCH---------------HHHHHHHHHHHHHHTSCCTTH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHhCh---------------hhhhHHHHHHHHhhcCcCCCc-----chHHHHHHHHHH
Confidence 5788999999999999999999975 556779999999999886554 456777775544
No 384
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=43.90 E-value=32 Score=37.30 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeEEee
Q 005656 337 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 375 (685)
Q Consensus 337 ~I~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~ 375 (685)
.|.++.+ +..++++-+.|+++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555555 578999999999999999999998887754
No 385
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.06 E-value=3.9e+02 Score=28.95 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=30.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeec
Q 005656 254 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 292 (685)
Q Consensus 254 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (685)
.|.++.+. ..++++-+.|.++|+|++.+++++.+...
T Consensus 223 ~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45555553 67999999999999999999998887766
No 386
>2qf9_A Putative secreted protein; structural genomics, DUF305, Q8CK01, PSI-2, protein structure initiative; HET: MSE; 1.69A {Streptomyces coelicolor A3}
Probab=36.53 E-value=72 Score=27.76 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHhhcccc---------ccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005656 621 RNNFEFIQAVIRLFLKIHGETV---------RCHTKLQDKARKLLEVQSAVWQKIDKMFQSA 673 (685)
Q Consensus 621 ~~~~e~~~~~l~~~l~~h~~~l---------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 673 (685)
..+|| ..||...+..|-+.| ..+|+++....+....|+.+...++.++...
T Consensus 109 G~~fD--~~fl~~MI~HH~~AI~ma~~~~~~g~dp~lk~lA~~ii~~Q~~EI~~m~~ll~~~ 168 (179)
T 2qf9_A 109 GKQAE--VYYLQLMTEHHRGGVHMAKGCVERCTVGVEKRLARGMVESQESEIRLMADLLAER 168 (179)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666 579999999999887 3589999999999999999999999987643
No 387
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=34.27 E-value=70 Score=24.55 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=35.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccccccch----HHHHHHHHHH---HHHHHHHHHHHHhhhccc
Q 005656 615 IHEISCRNNFEFIQAVIRLFLKIHGETVRCHT----KLQDKARKLL---EVQSAVWQKIDKMFQSAR 674 (685)
Q Consensus 615 ~~~l~~~~~~e~~~~~l~~~l~~h~~~l~~~~----~l~~~~~~l~---~~~~~~~~~~~~~~~~~~ 674 (685)
.+.|+++|. ..+..|=-.||..|.+-. +++..|.++. +.-..+|..++.+|++++
T Consensus 37 ~eKl~KKrs-----S~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~l~gf~i 98 (101)
T 3teq_A 37 AEKIKKKRN-----TLFGTFHVAHSSSLDDVDHKILTAKQALSEATAALRERLHRWQQIEILTGFQI 98 (101)
T ss_dssp HHHHHHHHH-----HHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHhhh-----chheeeehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 345555442 566777788999985422 2344444433 334469999999999875
No 388
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=33.35 E-value=2.9e+02 Score=25.43 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=68.4
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCC---CccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005656 203 TAVKACTISACGNFAVLGTAGGWIERFNLQS---GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 279 (685)
Q Consensus 203 ~~v~~~~~s~~g~~l~~g~~dg~i~~~d~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 279 (685)
..+..+........++..+..|.++.+.... +........ ..........|.++....++.+++.++..|.++..
T Consensus 33 D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~--~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~ 110 (256)
T 1zvt_A 33 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLT--GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVC 110 (256)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGG--GTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEee--eeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEe
Confidence 3444444444556788888899887775432 221111000 00111334567777554456778889999999998
Q ss_pred ECCC-------CceEEEeecCCceeEEEEe-ecCCEEEEEeCCCeEEEEEcCC
Q 005656 280 DFKG-------RDLKSRWEVGCSLVKIVYH-RVNGLLATVADDLVIRLFDVVA 324 (685)
Q Consensus 280 d~~~-------~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~I~i~d~~~ 324 (685)
.+.. +.....+.....+..+... .++..++..+.+|.+..++...
T Consensus 111 ~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 111 TFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp EGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred EHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 8742 2222223333444444444 3455777888888887777654
No 389
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=26.82 E-value=6.3e+02 Score=27.26 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=20.7
Q ss_pred eEEEEEc-cCCCEEEEEecCCcEEEEECCC
Q 005656 205 VKACTIS-ACGNFAVLGTAGGWIERFNLQS 233 (685)
Q Consensus 205 v~~~~~s-~~g~~l~~g~~dg~i~~~d~~~ 233 (685)
+..+... ..+..++..+.+|.+..|+...
T Consensus 604 lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~ 633 (716)
T 1zvu_A 604 VMPPVVIEDASDMLLAITQAGRMLMFPVSD 633 (716)
T ss_dssp BCCCEECCCTTCEEEEEETTSEEEEEESTT
T ss_pred EEEEEEecCCCCEEEEEeCCCeEEEEEHHH
Confidence 3333344 3456889999999999998864
No 390
>3bt5_A Uncharacterized protein DUF305; structural genomics, unknown function, PSI-2, protein structure initiative; 1.35A {Deinococcus radiodurans R1}
Probab=25.53 E-value=1.5e+02 Score=25.71 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHhhcccc---------ccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005656 621 RNNFEFIQAVIRLFLKIHGETV---------RCHTKLQDKARKLLEVQSAVWQKIDKMFQS 672 (685)
Q Consensus 621 ~~~~e~~~~~l~~~l~~h~~~l---------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 672 (685)
..+|| ..|+...+..|-..| ..+|+++....++...|+.+...++.++..
T Consensus 100 g~~~D--~~fl~~Mi~HH~~Ai~ma~~~~~~~~dp~vk~lA~~ii~~Q~~EI~~m~~~L~~ 158 (177)
T 3bt5_A 100 VEQAE--RQFLRLMIRHHQGAVAMTLPMLDAAARPEVERLARQIVVTQRGEIRTMEGVLGR 158 (177)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHGGGGCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666 579999999998887 357999999999999999999999998754
No 391
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.54 E-value=1.7e+02 Score=28.48 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccccccc--hHHHHHHHHHHHHHHHHHHHHHHh
Q 005656 603 EYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCH--TKLQDKARKLLEVQSAVWQKIDKM 669 (685)
Q Consensus 603 ~~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~~~l~~~--~~l~~~~~~l~~~~~~~~~~~~~~ 669 (685)
.+.++..+.+++...++...+.|.+-.-+.-=|+-|-.+|... ..+. .|..|+..+++-...+++|
T Consensus 86 ~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 86 SNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999955444455677777777331 1222 4444555544444444333
No 392
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=24.13 E-value=6.4e+02 Score=26.39 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=37.4
Q ss_pred CeEEEEECCCCceEEEeecC------CceeEEEE-eecC----CEEEEEeCCCeEEEEEcCCCe
Q 005656 274 GDIKVWDFKGRDLKSRWEVG------CSLVKIVY-HRVN----GLLATVADDLVIRLFDVVALR 326 (685)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~------~~i~~~~~-~~~~----~~l~~~~~dg~I~i~d~~~~~ 326 (685)
..|++.|+.++.++..+... ..+..+.. ..++ ..++.|...|.|.-+|+....
T Consensus 223 ~~Lyv~d~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 223 AALLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp EEEEEEETTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred cEEEEEECCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 47999999999999887643 12333332 2332 378999999999999987643
No 393
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=23.94 E-value=4.2e+02 Score=24.28 Aligned_cols=142 Identities=8% Similarity=0.039 Sum_probs=80.3
Q ss_pred EEEEEecCCcEEEEECCCCccccccccccccccCCCCcCEEEEEEcCCCCEEEEEECCCeEEEEECC---C----CceE-
Q 005656 216 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK---G----RDLK- 287 (685)
Q Consensus 216 ~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~---~----~~~~- 287 (685)
..++.+.+|.|+.-....-... .+ .. .-...+..+........++..+..|.++-+... . |..+
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~-~~------~l-ke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~ 75 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAP-GL------NY-KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLT 75 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCST-TS------CC-CTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGG
T ss_pred EEEEEeCCCEEEEeeCCcCCce-ec------cC-CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEee
Confidence 4566778888876664332110 00 01 223444444444444456667778886665432 2 2211
Q ss_pred --EEeecCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC-------CeeEEEEecCCCCeEEEEEc-CCCCEEEEEeCCC
Q 005656 288 --SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFS-EDGKWLLSSGMDG 357 (685)
Q Consensus 288 --~~~~~~~~i~~~~~~~~~~~l~~~~~dg~I~i~d~~~-------~~~~~~~~~h~~~I~~l~~s-pdg~~l~s~s~Dg 357 (685)
-.+..+..|..+....++.+++.++..|.++...+.. +..+..+.. ...+..+... .++..|+..+.+|
T Consensus 76 ~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G 154 (256)
T 1zvt_A 76 GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAG 154 (256)
T ss_dssp GTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTS
T ss_pred eeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCC
Confidence 1123345666664444566788899999999988743 233333432 2445555555 3456788888899
Q ss_pred cEEEEEcCC
Q 005656 358 SLRIWDVIL 366 (685)
Q Consensus 358 ~I~iwd~~~ 366 (685)
.+..+.+..
T Consensus 155 ~~lrf~~~e 163 (256)
T 1zvt_A 155 RMLMFPVSD 163 (256)
T ss_dssp EEEEEEGGG
T ss_pred eEEEEEHHH
Confidence 988888743
No 394
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.20 E-value=2.6e+02 Score=29.23 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=45.1
Q ss_pred CceeEEEEeecCC--EEEEEeCCCeEEEEEcCCC----eeEEEEe--cCCCCeE-EEEEcCCCCEEEEEeCCCcEEE
Q 005656 294 CSLVKIVYHRVNG--LLATVADDLVIRLFDVVAL----RMVRKFE--GHTDRIT-DFCFSEDGKWLLSSGMDGSLRI 361 (685)
Q Consensus 294 ~~i~~~~~~~~~~--~l~~~~~dg~I~i~d~~~~----~~~~~~~--~h~~~I~-~l~~spdg~~l~s~s~Dg~I~i 361 (685)
...++++....+. .+..|+.+|.|.-..+... ..+..+. ....+|. .|.+++++.+|+.++.++.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3466666665444 7788999998765555422 2333333 2246785 8999999999999987765554
No 395
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=21.04 E-value=1.6e+02 Score=22.20 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHH
Q 005656 608 ELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQ 664 (685)
Q Consensus 608 ~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~~~l~~~~~l~~~~~~l~~~~~~~~~ 664 (685)
+.+|+++.+.-..+..||-+|.=|. .-.+.+.+|..|+...+....
T Consensus 48 ~~Ll~~i~~~ee~R~~yE~LQDkL~-----------qi~eAR~ALdaLR~eH~~Klr 93 (98)
T 3f1i_H 48 PQLLELLNQLDERRLYYEGLQDKLA-----------QIRDARGALSALREEHREKLR 93 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777888887776654 345677788888776655443
No 396
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.01 E-value=3.3e+02 Score=28.09 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=43.8
Q ss_pred ceeEEEEeec----CC--EEEEEeCCCeEEEEEcC-CCe-------eEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCc
Q 005656 295 SLVKIVYHRV----NG--LLATVADDLVIRLFDVV-ALR-------MVRKFEG--HTDRITDFCFSEDGKWLLSSGMDGS 358 (685)
Q Consensus 295 ~i~~~~~~~~----~~--~l~~~~~dg~I~i~d~~-~~~-------~~~~~~~--h~~~I~~l~~spdg~~l~s~s~Dg~ 358 (685)
..++++...- ++ .+..|+.+|.|.-.-+. .+. .+..+.- ...+|..|.++++..+|..++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4566666543 43 67889999977544332 211 2223332 3578999999999999999998886
Q ss_pred EEE
Q 005656 359 LRI 361 (685)
Q Consensus 359 I~i 361 (685)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 397
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=20.15 E-value=69 Score=26.82 Aligned_cols=58 Identities=12% Similarity=0.322 Sum_probs=41.2
Q ss_pred hHHHHHHHhcCCcchhhhhhccCCCCCCCCcccccCcccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcccc
Q 005656 565 FSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETV 642 (685)
Q Consensus 565 ~~~~~~~l~~~~~s~id~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~e~~~~~l~~~l~~h~~~l 642 (685)
...++++|.+...+.|+..+.+|++ +..-.+|++|-..|....+. --.++|..|-..+
T Consensus 77 ~~~Vl~vL~siK~sdI~~~v~~L~~---------------~~~D~LMKYiYkGm~~~~~~-----~~~~LL~WHEKl~ 134 (152)
T 3dwl_G 77 LNAFVDVLSNIRAADIPAFVKECST---------------EEIDNIVNFIYRGLANPQAY-----NSSVLLNWHEKVV 134 (152)
T ss_dssp HHHHHHHHHTSCGGGHHHHHHHSCH---------------HHHHHHHHHHHHHTTC---------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHhCH---------------HHHHHHHHHHHHhccCcccc-----ccHHHHHHHHHHH
Confidence 5788999999999999999999975 45667888888888866311 1255666665443
Done!