BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005659
(685 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1U5|APC2_ARATH Anaphase-promoting complex subunit 2 OS=Arabidopsis thaliana
GN=APC2 PE=1 SV=1
Length = 865
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/663 (69%), Positives = 533/663 (80%), Gaps = 23/663 (3%)
Query: 1 MEESTSMYCNLGILEKLNDESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLC 60
ME S CNL ILE L+D+++QEI ESY+GF T SL+ G D V EFV+HV LC
Sbjct: 1 MEALGSSDCNLEILETLSDDAIQEITESYDGFFTTVESLIAGTGDSLVEDEFVSHVYCLC 60
Query: 61 KHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKA 120
K+GL SL HFLRSLE+ FE+ S FW+HFD YS+ K Y +E+ VLCKA
Sbjct: 61 KYGLDSLVRDHFLRSLEQAFEKGGASSFWQHFDAYSE------KKHHNYGEEIQIVLCKA 114
Query: 121 LEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSE-VHLFAKYQLMVSSVLMASLP 179
LEEI +E QY EKCL ++VHA++S ++ S + + D+E VHLF+++Q M+SS LM +LP
Sbjct: 115 LEEISIEKQYHEKCLSIVVHALQSFKEQSSDDRQNSDTERVHLFSRFQSMLSSTLMTTLP 174
Query: 180 PHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHG 239
HFPE+L+WYFK RLEELS IMDG DG + Q+ D MDLDEK + + GEMD+D+ + G
Sbjct: 175 QHFPEILHWYFKERLEELSAIMDG---DGIEEQEDDCMDLDEKLRYKNGEMDVDEGCSQG 231
Query: 240 KFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPI 299
K KLVK+IGKVV DLR++GFTSM ENAYASAIF LLKAKVH+LAG+DYR+SVLE I
Sbjct: 232 KRLGHDKLVKNIGKVVRDLRSIGFTSMAENAYASAIFLLLKAKVHDLAGDDYRTSVLESI 291
Query: 300 KAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTH-----NPSEGLVR 354
K WIQ VPLQFLNALL+YLG+S SY + ++GL SPLA CCP PSEG+VR
Sbjct: 292 KEWIQTVPLQFLNALLSYLGDSVSYGTTSSGLTSPLA----CCPSPSFSRVVTPSEGIVR 347
Query: 355 WRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALK 414
W+LRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFIS+LK
Sbjct: 348 WKLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISSLK 407
Query: 415 YRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLT 474
YRLLTAGASTNDILHQYVSTIKALR IDP GVFLEAVGEPIRDYLRGRKDTIKCIVTMLT
Sbjct: 408 YRLLTAGASTNDILHQYVSTIKALRAIDPAGVFLEAVGEPIRDYLRGRKDTIKCIVTMLT 467
Query: 475 DGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADP 534
DG+GGN NGSGN GDSLLEEL RDEE+QEN+G DD F+ DDKQAWINA WEPDPVEADP
Sbjct: 468 DGSGGNANGSGNPGDSLLEELMRDEESQENVGFDDDFHTDDKQAWINASRWEPDPVEADP 527
Query: 535 LKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHF 594
LKGS ++RKVDILGM+V IIGSK+QLVNEYRVMLA+KLLNK+DY+ID+EIRT+ELLKIHF
Sbjct: 528 LKGSLSQRKVDILGMLVDIIGSKEQLVNEYRVMLAEKLLNKTDYDIDTEIRTVELLKIHF 587
Query: 595 GESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWP 654
GE+SMQRCEIMLNDLIDSKR N NIK K S G+EL E +S+ L +TI+S+NFWP
Sbjct: 588 GEASMQRCEIMLNDLIDSKRVNTNIK----KASQTGAELRENELSVDTLTSTILSTNFWP 643
Query: 655 PMQ 657
P+Q
Sbjct: 644 PIQ 646
>sp|Q8BZQ7|ANC2_MOUSE Anaphase-promoting complex subunit 2 OS=Mus musculus GN=Anapc2 PE=1
SV=2
Length = 837
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 194/612 (31%), Positives = 293/612 (47%), Gaps = 63/612 (10%)
Query: 50 KEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIY 109
+E V L HGL S+ F+ L+ + ++FW N +
Sbjct: 68 EELRAAVEVLRGHGLHSVLEEWFVEVLQNDLQGNIATEFW--------------NAIALR 113
Query: 110 DDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLM 169
++ V E C L + E L +H++E + G + L K M
Sbjct: 114 ENSVDEPQCLGL--LLDAFGLLESRLDPYLHSLELLEKWTRLGLLMGAGAQGLREKVHTM 171
Query: 170 VSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDKDDMDLDEKGKQRTGE 229
+ VL S P F EM+ + GR + + E G D + + ++D ++
Sbjct: 172 LRGVLFFSTPRTFQEMVQRLY-GRFLRVYMQSKRKGEGGTDPELEGELDSRYARRRYYRL 230
Query: 230 MDIDQSNNHGKFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLL----KAKVHN 285
+ G ++ + + + + L S+ E A A+ + L + ++ +
Sbjct: 231 LQSPLCAGCGSDKQQCWCRQALEQFNQLSQVLHRLSLLERVCAEAVTTTLHQVTRERMED 290
Query: 286 LAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGT 345
+Y S L WI+ V + +LG+ D+PT P +
Sbjct: 291 RCRGEYERSFLREFHKWIERV--------VGWLGKVFLQDNPTR-------------PTS 329
Query: 346 HNPSEGLVRWRLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKL 405
L RWR ++ F Y LRI +LF II D+P+S PAIEDLK CLE T Q +L
Sbjct: 330 PEAGNTLRRWRCHVQRFFYRIYATLRIEELFSIIRDFPDSRPAIEDLKYCLERTDQRQQL 389
Query: 406 VESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDT 465
+ S AL+ RLL G +T DI+ Y+S IKALR +DP+ V LE EPIR YLR R+DT
Sbjct: 390 LVSLKVALETRLLHPGVNTCDIITLYISAIKALRVLDPSMVILEVACEPIRRYLRTREDT 449
Query: 466 IKCIVTMLTDGTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCW 525
++ IV LT G+ +G+G+ L EL++ + G D + + + W+
Sbjct: 450 VRQIVAGLT----GDSDGTGD----LAVELSKTDPACLETGQDSEDDSGEPEDWV----- 496
Query: 526 EPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIR 585
PDPV+ADP+K S RR DI+ ++V I GSKD +NEYR +LAD+LL++ + + EIR
Sbjct: 497 -PDPVDADPVKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIR 555
Query: 586 TLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDA 645
+ELLK+ FGE+ M CE+ML D+ DS+R NANI+ EK+ + EE G+ A
Sbjct: 556 NVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPV------EEQPPFGVY-A 608
Query: 646 TIISSNFWPPMQ 657
I+SS FWPP +
Sbjct: 609 VILSSEFWPPFK 620
>sp|Q9UJX6|ANC2_HUMAN Anaphase-promoting complex subunit 2 OS=Homo sapiens GN=ANAPC2 PE=1
SV=1
Length = 822
Score = 249 bits (637), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 222/408 (54%), Gaps = 44/408 (10%)
Query: 250 HIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQ 309
+ +V+H L L ++ A + + + + ++ + +Y S L WI+ V
Sbjct: 242 QLSQVLHRLSLL--ERVSAEAVTTTLHQVTRERMEDRCRGEYERSFLREFHKWIERV--- 296
Query: 310 FLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQD 369
+ +LG+ D P P + L RWR ++ F Y
Sbjct: 297 -----VGWLGKVFLQDGPAR-------------PASPEAGNTLRRWRCHVQRFFYRIYAS 338
Query: 370 LRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILH 429
LRI +LF I+ D+P+S PAIEDLK CLE T Q +L+ S +AL+ RLL G +T DI+
Sbjct: 339 LRIEELFSIVRDFPDSRPAIEDLKYCLERTDQRQQLLVSLKAALETRLLHPGVNTCDIIT 398
Query: 430 QYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGD 489
Y+S IKALR +DP+ V LE EPIR YLR R+DT++ IV LT G+ +G+G+
Sbjct: 399 LYISAIKALRVLDPSMVILEVACEPIRRYLRTREDTVRQIVAGLT----GDSDGTGD--- 451
Query: 490 SLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADPLKGSRNRRKVDILGM 549
L EL++ + G D + + + W+ PDPV+ADP K S RR DI+ +
Sbjct: 452 -LAVELSKTDPASLETGQDSEDDSGEPEDWV------PDPVDADPGKSSSKRRSSDIISL 504
Query: 550 IVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDL 609
+V I GSKD +NEYR +LAD+LL++ + + EIR +ELLK+ FGE+ M CE+ML D+
Sbjct: 505 LVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDM 564
Query: 610 IDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQ 657
DS+R NANI+ EK+ EE G+ A I+SS FWPP +
Sbjct: 565 ADSRRINANIREEDEKRP------AEEQPPFGVY-AVILSSEFWPPFK 605
>sp|Q551S9|APC2_DICDI Anaphase-promoting complex subunit 2 OS=Dictyostelium discoideum
GN=anapc2 PE=3 SV=1
Length = 907
Score = 196 bits (497), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 130/426 (30%), Positives = 211/426 (49%), Gaps = 39/426 (9%)
Query: 258 LRTLGFTSMTENAYASAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALL-- 315
L+ L F ++E + +F + + + S L+ I W V ++L +L
Sbjct: 259 LQDLNFIVISEEIFTQILFKKVFEYIETRCKGVFEKSFLKSILEWADQVIFKWLAMILLS 318
Query: 316 AYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETLQDLRIAKL 375
+ + + N + +W+ RLE+ YE RI++L
Sbjct: 319 STTTTKINNYNDIINNNDDDNDDDDDDENKENSLKIFNQWKKRLEFSIYENYSQQRISEL 378
Query: 376 FEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTI 435
F++IV YP+S P++EDL C + ++ + L RLL GA+T+DI+ QY+STI
Sbjct: 379 FDMIVQYPDSLPSLEDLSICFQKIPIEKTMITNLKRVLHNRLLHPGANTSDIITQYISTI 438
Query: 436 KALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGG------NPNGSGNAGD 489
A+ IDP+G+ +E VG+PIR+YL R+DTI+CI++ T+ + N + N GD
Sbjct: 439 HAMDIIDPSGMVMEKVGKPIREYLSQREDTIRCIISSFTEESNEIYQELCNYDPQDNGGD 498
Query: 490 -----SLLEELNRDEENQENIGVDDGFN---IDDKQAWINAVCWEPDPVEADPLKGS--- 538
SLL N D + VD+G N IDD + WI P+ ++ S
Sbjct: 499 DDSNNSLLAFGNCD------LYVDEGDNFSSIDDFKFWI------PNKIDGSSTTISIGN 546
Query: 539 -------RNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLK 591
+ ++K D + +V I D +NEYR ML+D+LL+ D+++D EI+ +ELLK
Sbjct: 547 AKANNNNKKKKKKDTISHLVNIYDGIDLFINEYRSMLSDRLLSVVDFDLDKEIKNIELLK 606
Query: 592 IHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSN 651
+ FG+S + CEIM+ D++DSKR N IK + + + + L + I+S
Sbjct: 607 LRFGDSVLFNCEIMIKDMVDSKRLNLQIKNS-QGVNNNNNNNNNNNNELKEFETLILSQL 665
Query: 652 FWPPMQ 657
FWP ++
Sbjct: 666 FWPTLK 671
>sp|Q874R3|APC2_SCHPO Anaphase-promoting complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=apc2 PE=1 SV=1
Length = 681
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 40/304 (13%)
Query: 357 LRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYR 416
++L++ + L LR + +I++ YP S AIEDL+ Q L E+F+
Sbjct: 208 VQLDHLVSQILAHLRSDNILDIVLHYPNSLGAIEDLRLVARQKQQRQYLTETFVKDCTSS 267
Query: 417 LLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTML-TD 475
+LTA + ++ IL YVSTI+ +DP GV L+ +PIR +L R+D KC+V++L D
Sbjct: 268 ILTASSDSSYILLFYVSTIRCFVALDPPGVLLDKAAKPIRSFLNEREDAYKCLVSLLFVD 327
Query: 476 GTGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADP- 534
G G L EL++ NID + W PDP++A P
Sbjct: 328 GEKG-----------LRSELSQIPTE----------NIDSTTDRFDNYHWMPDPIDAAPD 366
Query: 535 LKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHF 594
K +R D++G ++ I SK+ LV E +++LAD+LL +DY + E + +E LK F
Sbjct: 367 FKKPTDR---DVVGSLISIFKSKEPLVKELQLLLADRLLQLTDYHYEVEAKNIEFLKYRF 423
Query: 595 GESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWP 654
GE+ +Q C +MLND+ +S+ + +I E VS G L TI+S FWP
Sbjct: 424 GETVLQMCSVMLNDIENSRFIDQSIHM-------------ENYVSKG-LHVTILSRLFWP 469
Query: 655 PMQV 658
+ V
Sbjct: 470 TLSV 473
>sp|P34514|APC2_CAEEL Anaphase-promoting complex subunit 2 OS=Caenorhabditis elegans
GN=apc-2 PE=1 SV=3
Length = 731
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 146/288 (50%), Gaps = 15/288 (5%)
Query: 378 IIVDYPESSPAIEDLKQCLEYTGQHSKL--VESFISALKYRLLTAGASTNDILHQYVSTI 435
I VD+P ++ +K CL T H ++ I + +LL A T DIL Y + +
Sbjct: 234 IAVDFPVKFRSLITMKYCLLRTNNHGRVDFTNYLIDQVNTKLLVASVDTKDILKAYAACV 293
Query: 436 KALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEEL 495
++LR +D + V + V IR+YL+ R DT++ I++ +T + +
Sbjct: 294 ESLREMDNSCVVMHKVCGVIREYLKRRPDTVQQIISYITSNKKNELEKDMSLQSKTVRSA 353
Query: 496 NRDEENQENIGVDDGFNIDDKQ--AWINAVCWEPDPVEADPLKGSRNRRKVDILGMIVGI 553
DEE E GV+D F ++ + W N W P+P +A G+ + VD+ M+V +
Sbjct: 354 MMDEE--ELKGVNDDFLPENMETLGWEN---WMPNPTDATVGDGAPGHQGVDVFNMLVSV 408
Query: 554 IGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSK 613
GSK+ V EYR +LA++L + + + + E R L+LLK+ F S +Q CE+ML D+I S
Sbjct: 409 YGSKELFVKEYRNLLAERLSSSDNKDPEFEKRYLDLLKLRFQYSELQHCEVMLRDVIHSL 468
Query: 614 RTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWST 661
+ + E+ + G V + + A IISS++WP ++ T
Sbjct: 469 DIDKKFEDMSERSA------GNYDVPIIPISACIISSHYWPKLETEKT 510
>sp|Q12440|APC2_YEAST Anaphase-promoting complex subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=APC2 PE=1 SV=1
Length = 853
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 124/267 (46%), Gaps = 39/267 (14%)
Query: 370 LRIAKLFEI-IVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDIL 428
+R ++F+I ++ YP+S + +L++ ++ ++ +V +F+S K +L +T D L
Sbjct: 282 IRTNEIFDICVLAYPDSKVTLLELRKIMKDFKDYTNIVTTFLSDFKKYILNPSVTTVDAL 341
Query: 429 HQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTD------GTGGNPN 482
+YV TIKA +DPTG L ++ ++ Y + RK + ++ + D N N
Sbjct: 342 LRYVKTIKAFLVLDPTGRCLHSITTFVKPYFQERKHLVNVLLYAMLDLPEEELKEKINFN 401
Query: 483 GSGNAGDSLLEELNRDEENQE-NIGVDDGFNIDDKQAW---------INA---------- 522
A SL++ L+ + NQ+ NI D N W +N
Sbjct: 402 VDMKALLSLVDTLHDSDINQDTNITKRDK-NKKSPFLWNLKVKGKRELNKDLPIRHAMLY 460
Query: 523 -------VCWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNK 575
+ W P+P + P + K ++ +++ + S++ ++E+R +L D+L
Sbjct: 461 EHILNYYIAWVPEPNDMIPGNIKSSYIKTNLFEVLLDLFESREFFISEFRNLLTDRLFTL 520
Query: 576 SDYEIDSE-IRTLELLK---IHFGESS 598
Y +D + R L+L++ + F E+S
Sbjct: 521 KFYTLDEKWTRCLKLIREKIVKFTETS 547
>sp|Q09760|CUL3_SCHPO Cullin-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cul3 PE=1 SV=2
Length = 785
Score = 39.7 bits (91), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 553 IIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDS 612
I KD Y+ LA +LLN D+E+ + LK G Q+ E M ND+
Sbjct: 458 FISEKDVFEKYYKTHLAKRLLNNRSISSDAELGMISRLKQEAGNVFTQKLEGMFNDM--- 514
Query: 613 KRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWP 654
N+ + ++ S L +L L+ +I++S FWP
Sbjct: 515 -----NLSQELLQEYKHNSALQSAKPALD-LNVSILASTFWP 550
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3
Length = 759
Score = 37.0 bits (84), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Query: 542 RKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQR 601
R +D + ++ I KD Y+ LA +LL +D+E L LK G + +
Sbjct: 431 RTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSK 490
Query: 602 CEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDAT--IISSNFWP---PM 656
E M D+ SK + K ++ QS +G +D T I++ +WP PM
Sbjct: 491 LEGMFKDMELSKDIMVHFKQHMQNQSDSGP-----------IDLTVNILTMGYWPTYTPM 539
Query: 657 QVWSTLFLIMISIIY 671
+V T +I + ++
Sbjct: 540 EVHLTPEMIKLQEVF 554
>sp|Q1XDD8|CH60_PORYE 60 kDa chaperonin, chloroplastic OS=Porphyra yezoensis GN=groL PE=3
SV=2
Length = 528
Score = 36.6 bits (83), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 40 LNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEET-----FERTFVSKFWRHFDV 94
L+ G DI VGK + + + G+ SL G ++ E FE+ F+S ++
Sbjct: 149 LSSGNDIEVGKMIANAIEKVGREGVISLEEGKSTNTILEITEGMQFEKGFISPYF--VTD 206
Query: 95 YSKVAVLEKNKPLIYDDEVHEVLCKALEEICMEIQYQEKCLFMLVHAIESPRDCSLEGKP 154
++ VL++N +++ D+ ++ + L + +I + L ++ IE ++
Sbjct: 207 TERMEVLQENPFILFTDKKITLVQQELVPLLEQIAKTSRPLLIIAEDIEKEALATI---- 262
Query: 155 ILDSEVHLFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDGELEDGNDSQDK 214
+ K + +++ V A P F + K LE++S + +G++ +
Sbjct: 263 -------VVNKLRGILNVV--AVRAPGFGD----RRKSLLEDMSILTNGQVITEDAGLSL 309
Query: 215 DDMDLDEKGKQR 226
D + LD GK R
Sbjct: 310 DTVQLDMLGKAR 321
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1
Length = 759
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 16/122 (13%)
Query: 542 RKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQR 601
R +D + ++ I KD Y+ LA +LL +D+E L LK G + +
Sbjct: 431 RILDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSK 490
Query: 602 CEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDAT--IISSNFWP---PM 656
E M D+ SK + K ++ QS G +D T I++ +WP PM
Sbjct: 491 LEGMFKDMELSKDIMVHFKQHMQNQSAPGP-----------IDLTVNILTMGYWPTYTPM 539
Query: 657 QV 658
+V
Sbjct: 540 EV 541
>sp|P94427|GABT_BACSU Probable 4-aminobutyrate aminotransferase OS=Bacillus subtilis
(strain 168) GN=gabT PE=3 SV=1
Length = 436
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 17 LNDESVQE-IIESYNGF-----------CATTNSLLNGGRDIAVGKEFVTHVRSLCK-HG 63
++DES + +I+++N F C + G I K FV HV S CK HG
Sbjct: 187 MSDESYDDMVIQAFNDFFIASVAPETVACVVMEPVQGEGGFIIPSKRFVQHVASFCKEHG 246
Query: 64 LQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKN 104
+ +A ++ F RT HFDV + + K+
Sbjct: 247 IVFVAD-----EIQTGFARTGTYFAIEHFDVVPDLITVSKS 282
>sp|A1SY74|GCSP_PSYIN Glycine dehydrogenase [decarboxylating] OS=Psychromonas ingrahamii
(strain 37) GN=gcvP PE=3 SV=1
Length = 966
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 356 RLRLEYFAYE----TLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFIS 411
R R E+F YE +++DL LF ++ YP ++ I+DL +E LV
Sbjct: 189 RTRAEFFGYEIISGSMEDLDNHDLFGALLQYPSTTGNIQDLTAIIEKAHAKKTLVSVASD 248
Query: 412 ALKYRLLTA 420
L LL A
Sbjct: 249 LLALTLLKA 257
>sp|P18257|ACHN3_CARAU Neuronal acetylcholine receptor subunit non-alpha-3 OS=Carassius
auratus PE=2 SV=1
Length = 466
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 273 SAIFSLLKAKVHNLAGEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLK 332
S I +L VH+ + Y P+ W++++ LQ L LL G ++ Y P L+
Sbjct: 313 SIIVTLFVINVHHRSSATY-----HPMAPWVKSLFLQRLPRLLCMRGHTDRYQYPDIELR 367
Query: 333 SPLASR 338
SP R
Sbjct: 368 SPELKR 373
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4
Length = 913
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 544 VDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCE 603
+D + +I I KD Y+ LA +LL +D+E L LK G + + E
Sbjct: 587 LDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLE 646
Query: 604 IMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWP---PMQV 658
M D+ SK K ++ Q++ G+ L I++ +WP PM+V
Sbjct: 647 GMFKDMELSKDIMIQFKQYMQNQNVPGN---------IELTVNILTMGYWPTYVPMEV 695
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1
Length = 970
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 544 VDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCE 603
+D + +I I KD Y+ LA +LL +D+E L LK G + + E
Sbjct: 644 LDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLE 703
Query: 604 IMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWP---PMQV 658
M D+ SK K ++ Q++ G+ L I++ +WP PM+V
Sbjct: 704 GMFKDMELSKDIMIQFKQYMQNQNVPGN---------IELTVNILTMGYWPTYVPMEV 752
>sp|Q9QXW2|FBXW5_MOUSE F-box/WD repeat-containing protein 5 OS=Mus musculus GN=Fbxw5 PE=1
SV=1
Length = 573
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 477 TGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADPLK 536
T G G G D+ + L+ + +I + G + D++ ++N+ W P V ADP++
Sbjct: 380 TAGPVLGEGRGSDAFFDALDHVIDVHGHI-IGMGLSPDNRYLYVNSRAWPPGSVVADPMQ 438
Query: 537 GSRNRRKVDIL 547
++D+L
Sbjct: 439 PPPIAEEIDLL 449
>sp|Q4KLI9|FBXW5_RAT F-box/WD repeat-containing protein 5 OS=Rattus norvegicus GN=Fbxw5
PE=2 SV=1
Length = 569
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 477 TGGNPNGSGNAGDSLLEELNRDEENQENIGVDDGFNIDDKQAWINAVCWEPDPVEADPLK 536
T G G G D+ + L+ + +I + G + D++ ++N+ W P V ADP++
Sbjct: 380 TAGPVLGEGRGSDAFFDALDHVIDVHGHI-IGMGLSPDNRYLYVNSRAWPPGSVVADPMQ 438
Query: 537 GSRNRRKVDIL 547
++D+L
Sbjct: 439 PPPIAEEIDLL 449
>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1
Length = 768
Score = 32.7 bits (73), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 544 VDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCE 603
+D ++ + KD Y+ LA +LL DSE + LK G + E
Sbjct: 412 LDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLE 471
Query: 604 IMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDAT--IISSNFWP 654
M D+ S T + L GVSLG +D T ++++ +WP
Sbjct: 472 GMFRDMSISNTTMDEFR----------QHLQATGVSLGGVDLTVRVLTTGYWP 514
>sp|A4IHP4|CUL3_XENTR Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1
Length = 768
Score = 32.7 bits (73), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 544 VDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCE 603
+D ++ + KD Y+ LA +LL DSE + LK G + E
Sbjct: 412 LDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLE 471
Query: 604 IMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDAT--IISSNFWP 654
M D+ S T + L GVSLG +D T ++++ +WP
Sbjct: 472 GMFRDMSISNTTMDEFR----------QHLQTTGVSLGGVDLTVRVLTTGYWP 514
>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2
Length = 768
Score = 32.7 bits (73), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 544 VDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCE 603
+D ++ + KD Y+ LA +LL DSE + LK G + E
Sbjct: 412 LDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLE 471
Query: 604 IMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDAT--IISSNFWP 654
M D+ S T + L GVSLG +D T ++++ +WP
Sbjct: 472 GMFRDMSISNTTMDEFR----------QHLQATGVSLGGVDLTVRVLTTGYWP 514
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1
Length = 768
Score = 32.7 bits (73), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 544 VDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCE 603
+D ++ + KD Y+ LA +LL DSE + LK G + E
Sbjct: 412 LDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLE 471
Query: 604 IMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDAT--IISSNFWP 654
M D+ S T + L GVSLG +D T ++++ +WP
Sbjct: 472 GMFRDMSISNTTMDEFR----------QHLQTTGVSLGGVDLTVRVLTTGYWP 514
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 259,078,340
Number of Sequences: 539616
Number of extensions: 11437770
Number of successful extensions: 33175
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 33117
Number of HSP's gapped (non-prelim): 62
length of query: 685
length of database: 191,569,459
effective HSP length: 124
effective length of query: 561
effective length of database: 124,657,075
effective search space: 69932619075
effective search space used: 69932619075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)