Query 005659
Match_columns 685
No_of_seqs 201 out of 322
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 11:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2165 Anaphase-promoting com 100.0 1E-107 2E-112 904.1 43.4 541 48-681 28-573 (765)
2 smart00182 CULLIN Cullin. 99.9 1.2E-22 2.6E-27 191.7 11.6 117 554-679 2-126 (142)
3 PF00888 Cullin: Cullin family 99.8 2.6E-18 5.7E-23 193.3 17.9 269 358-679 207-493 (588)
4 COG5647 Cullin, a subunit of E 99.6 1.9E-15 4.2E-20 171.2 7.7 123 547-680 449-579 (773)
5 KOG2167 Cullins [Cell cycle co 99.5 1.4E-14 2.9E-19 161.4 10.1 126 544-679 338-471 (661)
6 KOG2166 Cullins [Cell cycle co 99.5 3.6E-14 7.8E-19 164.8 7.7 122 547-679 410-539 (725)
7 KOG2284 E3 ubiquitin ligase, C 98.4 2.7E-07 5.9E-12 100.5 4.4 71 551-623 439-509 (728)
8 KOG2285 E3 ubiquitin ligase, C 98.2 5.8E-06 1.3E-10 91.1 9.0 122 550-679 436-566 (777)
9 KOG2796 Uncharacterized conser 42.5 1.4E+02 0.003 32.8 8.9 120 350-475 167-315 (366)
10 KOG2753 Uncharacterized conser 31.4 2.9E+02 0.0064 31.0 9.5 67 411-477 148-219 (378)
11 PF15469 Sec5: Exocyst complex 31.3 1.1E+02 0.0024 30.2 5.9 49 403-462 134-182 (182)
12 PF08361 TetR_C_2: MAATS-type 23.1 6E+02 0.013 23.4 10.6 93 359-453 10-109 (121)
No 1
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-107 Score=904.11 Aligned_cols=541 Identities=39% Similarity=0.568 Sum_probs=449.7
Q ss_pred chhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcchhhhhcccccccchhhhhcCCccccchhHHHHHHHHHHHHHHH
Q 005659 48 VGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSKFWRHFDVYSKVAVLEKNKPLIYDDEVHEVLCKALEEICME 127 (685)
Q Consensus 48 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~le~~l~~~~~p~FW~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 127 (685)
+++++ +..++.+|+.++..++|++++|..++.++. ||+||.++...+...++. ...++.+--.
T Consensus 28 ~e~~~---~~~~~~~~~~s~s~~~~~~vl~~~~~~~~~--fw~~i~~~~~~~~~~~~i--------~~l~d~~~ll---- 90 (765)
T KOG2165|consen 28 MEDND---FKSLSQLGLPSLSIENFIKVLQFNNQKTIP--FWSAINQSLAKSIVAKNI--------ENLLDKTGLL---- 90 (765)
T ss_pred CchHH---HHHHHhcccchhhHHHHHHHHHHHHhhcch--HHHHHHHHHHhcchhhhH--------HHHHhHHhHH----
Confidence 66666 888999999999999999999999999986 999998665442211111 1111111111
Q ss_pred HHHHHHHHHHHHHhhhCCcccccCCCCCCchhhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHhhhHhhhhhhhcccccC
Q 005659 128 IQYQEKCLFMLVHAIESPRDCSLEGKPILDSEVHLFAKYQLMVSSVLMASLPPHFPEMLYWYFKGRLEELSTIMDGELED 207 (685)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~l~~~~p~~f~~il~~fy~~~~~~~~~~~~~~~~~ 207 (685)
.++...++ +.++++++.. .+-..++++|+|..+++++|++|.+++..||+..|.+++.+|+...+.
T Consensus 91 ~~~~~~yi--~~~~l~~~l~------------~g~~~~i~~~~r~~~~~~lP~~f~~vl~~~~~~~l~~~~~~~~~~~~~ 156 (765)
T KOG2165|consen 91 SSFKDFYI--FQVRLRFFLL------------FGNGDRIKDCLRWELYYELPLRFIEVLDVYFNEHLLELNKAMHLLLTR 156 (765)
T ss_pred HHHHHHHH--HHHHHHHHHH------------hCcccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 11111221 1122221111 111123999999999999999999999999999999999999754432
Q ss_pred CCCCCCCCcccccccccccCCCCCccccccccchhhhHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh
Q 005659 208 GNDSQDKDDMDLDEKGKQRTGEMDIDQSNNHGKFSEKSKLVKHIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNLA 287 (685)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~e~~~~svl~~~I~~~v~~~c 287 (685)
.+ .|+|.+ ..+|+.....|+|...+++|+++++.|+++||.+++.++++++++..|+++++++|
T Consensus 157 ~d-----~~~dl~-----------~~gc~t~~~k~~cd~~~~~f~~l~~~Lk~~~l~~~~~ea~~s~l~l~l~~~l~d~~ 220 (765)
T KOG2165|consen 157 ND-----HDIDLD-----------LQGCSTRKDKLICDQLVDLFNQLVQKLKSLNLSSVSTEAIVSVLYLKLKAFLEDRC 220 (765)
T ss_pred CC-----cccCcc-----------ccccCchHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 113332 24566666666667799999999999999999889999999999999999999999
Q ss_pred hccccccchhHHHHHHHHhhhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 005659 288 GEDYRSSVLEPIKAWIQAVPLQFLNALLAYLGESESYDSPTAGLKSPLASRPLCCPGTHNPSEGLVRWRLRLEYFAYETL 367 (685)
Q Consensus 288 ~~~~~~s~L~~l~~Wi~~V~~~~l~~vl~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~L~~~~y~~l 367 (685)
+|.|++++++++.+||++|+.+|+..|... ++..+|+.++++++|++|
T Consensus 221 ~~~~~~s~l~s~~~wI~~~~~~wl~~V~~~--------------------------------e~~~~~~~~l~~~~~~~f 268 (765)
T KOG2165|consen 221 SGVWDRSVLESFNKWINTVWGQWLKLVFSQ--------------------------------ESDHAFKLTLDYFFYEIF 268 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------------------------ccccceeeeeHHHHHHHH
Confidence 999999999999999999999999998432 234569999999999999
Q ss_pred HHHHHhhhhhhhcccCCchhHHHHHHHHHhhcChhhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhCCCccc
Q 005659 368 QDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVF 447 (685)
Q Consensus 368 ~~lRI~ElFdIIvdyPdS~pAI~DLr~cL~~t~~r~~Lv~sf~~~l~~RLLhpGa~T~dIL~~YIstIkaL~iLDPsGVl 447 (685)
+++||+++|+||+|||+|.|||+|||+||.++++|.+|+++|++++++|||||||+|.|||++||+||||||+|||+||+
T Consensus 269 a~lr~~~~f~Iv~dyPdS~~aiedLK~cle~t~qr~~ltesfi~~l~~riL~asv~T~DIL~~YVstIkalr~lDptgV~ 348 (765)
T KOG2165|consen 269 ARLRINEIFDIVLDYPDSKPAIEDLKYCLERTDQRVYLTESFISDLKTRILTASVDTVDILLRYVSTIKALRVLDPTGVI 348 (765)
T ss_pred HHHHHhhHHHHHHhCCccchhHHHHHHHHHHhcchHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHHhhCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhHHhhccCCchHHHHHHHhcCCCCCCCCCCCCCcccHHHHhccC-cccccccCCCCCCCcchhhhhhcCCCcc
Q 005659 448 LEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNRD-EENQENIGVDDGFNIDDKQAWINAVCWE 526 (685)
Q Consensus 448 L~~V~~PIr~YLR~R~DTVr~IV~~Ltd~~~~~~~~~~~~~~~L~eEL~~~-~~~~~~~~~ddd~~~d~~~~w~~~~~W~ 526 (685)
|++||.|||+|||+|+|||+|||++|||..+.+. + .+++.||+.. +..+++.+.++|...|..+.|. ..||+
T Consensus 349 Le~v~~pIR~YLr~R~DtVk~iVs~lt~~~k~~~-----~-~Dl~~els~~d~~~~e~i~~n~D~~td~~~~~e-~~~W~ 421 (765)
T KOG2165|consen 349 LEKVTEPIRDYLRERKDTVKQIVSGLTDLPKSEG-----E-KDLSAELSKVDTLHDEDIGENDDSPTDDFMNYE-ILNWM 421 (765)
T ss_pred hHHhhHhHHHHHhhCccHHHHHHHHHhcCCccCC-----c-ccHHHHHhccCccchhhcccCcCCCcchhhhhh-hhhcc
Confidence 9999999999999999999999999998743221 2 3677787764 4556677888888788888884 67999
Q ss_pred CCCCCCCCCCCCCCccccchHHHHHHHhcChhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhhCcccccchHHHH
Q 005659 527 PDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIML 606 (685)
Q Consensus 527 PdPidA~p~~~~k~~k~~DiI~~Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~LelLK~RFGe~~l~~CEVML 606 (685)
|||+||+|+++++++++.||++|||+||||||.||+|||+|||+|||++.+|+.++|+|+||+||.||||+.||.|||||
T Consensus 422 PdPiDA~pg~~s~k~r~~Di~~mLVsIygSKElfv~EyRnLLAdRLl~~~dy~~E~E~R~leLLKlrFgEt~lq~CevML 501 (765)
T KOG2165|consen 422 PDPIDADPGKGSSKYRKVDIFGMLVSIYGSKELFVKEYRNLLADRLLTLTDYDPEKEIRNLELLKLRFGETSLQGCEVML 501 (765)
T ss_pred CCCccCCCCCCCcccccccHHHHHHHHHcchHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccCCccccCCCCCCcceEEEccCCCCCCCCCCccccCcch---h-hhhhhccCCceee
Q 005659 607 NDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMI---S-IIYSKDRHKITIV 681 (685)
Q Consensus 607 KDI~dSKrin~~ik~~~~~~~~~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~L~p~---E-~~Y~k~y~~~~~~ 681 (685)
+||.+|+|||++|++.... ..+....+.+.++++|||++|||++.+. ...||-+ | +.|++.|+++|+-
T Consensus 502 ~Dv~dS~~id~~i~~~~~~------~r~~e~~~~~~i~~~IlS~~fWP~~~~~-~~~lP~pl~~el~~Y~~~Y~~~K~~ 573 (765)
T KOG2165|consen 502 NDVIDSRRIDQSIHNESEL------SRGAEEVPDFGISATILSSLFWPPLCDE-AFHLPGPLEAELDKYAEIYEQLKRG 573 (765)
T ss_pred Hhhhhhhhhhhhhhhhhhh------hcccccCCCCchhhhhhhhhcCCccccc-cccCChhHHHHHHHHHHHHHHhccC
Confidence 9999999999999986421 0122334467899999999999999973 4444433 2 9999999999974
No 2
>smart00182 CULLIN Cullin.
Probab=99.88 E-value=1.2e-22 Score=191.70 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=98.9
Q ss_pred hcChhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhhCcccccchHHHHhhHHHHHHHHHHHHHHHhhhhccCCcc
Q 005659 554 IGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSEL 633 (685)
Q Consensus 554 ~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~LelLK~RFGe~~l~~CEVMLKDI~dSKrin~~ik~~~~~~~~~~~~~ 633 (685)
+++||+|+++|+++||+|||..++++.+.|.++|++||.+||.+++++||+||+||..|+++++.|++.....
T Consensus 2 ~~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kle~Ml~Di~~S~~l~~~f~~~~~~~------- 74 (142)
T smart00182 2 IQDKDVFEKYYKKHLAKRLILNRSASDDAEENMITKLKQECGYEFTSKLERMFRDISLSKDLNQSFKDMLENN------- 74 (142)
T ss_pred CCchHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 5899999999999999999999999999999999999999999999999999999999999999999775310
Q ss_pred ccCCCCCCcceEEEccCCCCCCCCCCccccCcch--------hhhhhhccCCce
Q 005659 634 GEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMI--------SIIYSKDRHKIT 679 (685)
Q Consensus 634 ~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~L~p~--------E~~Y~k~y~~~~ 679 (685)
......++++.|||++|||....+....+|+. +.+|.++|.+=|
T Consensus 75 --~~~~~~~~~~~VLs~~~WP~~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~Rk 126 (142)
T smart00182 75 --SNKPIIDLNVRVLTSGYWPTSSTEVEINLPQELEDALEEFEEFYLAKHSGRK 126 (142)
T ss_pred --cCCCCCceEEEECCCCCCCCCCCCCceECCHHHHHHHHHHHHHHHhCCCCCe
Confidence 01123679999999999999987446666666 467777665543
No 3
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3). Cullins are found throughout eukaryotes. Humans express seven cullins (Cul1, 2, 3, 4A, 4B, 5 and 7), each forming part of a multi-subunit ubiquitin complex. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [, , ]. This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an alpha+beta domain, and a winged helix-like domain.; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 2WZK_A 3DQV_D 3DPL_C 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_A 1U6G_A 4A0K_A ....
Probab=99.78 E-value=2.6e-18 Score=193.29 Aligned_cols=269 Identities=18% Similarity=0.245 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHhhh----hhhhcccCCchhHHHHHHHHHhhcChhhHHHHHHHHHHHHhhccCCCChHHHH-----
Q 005659 358 RLEYFAYETLQDLRIAKL----FEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDIL----- 428 (685)
Q Consensus 358 ~L~~~~y~~l~~lRI~El----FdIIvdyPdS~pAI~DLr~cL~~t~~r~~Lv~sf~~~l~~RLLhpGa~T~dIL----- 428 (685)
++...+.+.++.-.++.| .+++.+ .-.+||+.+.........-+..+...++.++.+.|..+.+..
T Consensus 207 ki~~~l~~~LI~~~~~~l~~~~~~ll~~-----~~~~~L~~ly~l~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~ 281 (588)
T PF00888_consen 207 KIIKTLEEVLISDHLDELSSGFRDLLEE-----DDKEDLKRLYRLFSRVPNGLESLRDAFKEYIKKEGQNIIDSFEKSSD 281 (588)
T ss_dssp HHHHHHHHHHTGGGHHHHHTCHHHHHHT-----T-HHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Confidence 344444454444444333 333333 245567666665555445667788888888888888777764
Q ss_pred -HHHHHHHHHHHhhCCCccchhhhchhhHHhhccCCchHHHHHHHhcCCCCCCCCCCCCCcccHHHHhccCcccccccCC
Q 005659 429 -HQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNRDEENQENIGV 507 (685)
Q Consensus 429 -~~YIstIkaL~iLDPsGVlL~~V~~PIr~YLR~R~DTVr~IV~~Ltd~~~~~~~~~~~~~~~L~eEL~~~~~~~~~~~~ 507 (685)
..||..+-.+ .++....++..+....+...++-.++.+--+.+ ....++.|++--...-..+.
T Consensus 282 ~~~~i~~ll~l---------~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~-------~~~~~e~La~y~d~~l~~~~ 345 (588)
T PF00888_consen 282 PKEFIEDLLEL---------YDKYEKLIQECFDNDSEFKKALDEAFEEFLNKN-------NNKIPELLAKYCDSLLRKSN 345 (588)
T ss_dssp CHHHHHHHHHH---------HHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHCS-------TSHHHHHHHHHHHHHHBSSC
T ss_pred hHHHHHHHHHH---------HHHHHHHHHHhccccHHHHHHHHHhHHHHHHcC-------CcchHHHHHHHhhHhhhhcc
Confidence 1333332222 233344566666666665555544443210000 01233333331100000000
Q ss_pred CCCCCcchhhhhhcCCCccCCCCCCCCCCCCCCccccchHHHHHHHhcChhHHHHHHHHHHHHHhccCCCCChhHHHHHH
Q 005659 508 DDGFNIDDKQAWINAVCWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTL 587 (685)
Q Consensus 508 ddd~~~d~~~~w~~~~~W~PdPidA~p~~~~k~~k~~DiI~~Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~L 587 (685)
... . + .......|.+..|++++++||+|++.|+++||+|||..++++.+.|..++
T Consensus 346 -~~~-~---------------------~--~~~~~~~~~i~~l~~~l~~Kd~F~~~Y~~~L~~RLl~~~~~~~~~E~~~i 400 (588)
T PF00888_consen 346 -KKL-S---------------------E--EEIEQKLDDIVKLFSYLSDKDVFEKYYKKLLAKRLLSNKSFSEDAEKSMI 400 (588)
T ss_dssp -CCS-----------------------H--CCHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHTT-BS-HHHHHHHH
T ss_pred -ccc-c---------------------h--HHHHHHhhhhEEEeeecchhHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 000 0 0 01234578899999999999999999999999999999999999999999
Q ss_pred HHHHHhhCcccccchHHHHhhHHHHHHHHHHHHHHHhhhhccCCccccCCCCCCcceEEEccCCCCCCCCCCccccCcch
Q 005659 588 ELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMI 667 (685)
Q Consensus 588 elLK~RFGe~~l~~CEVMLKDI~dSKrin~~ik~~~~~~~~~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~L~p~ 667 (685)
++||.+||.+++++|++|++||..|++++..|++..... .....+..++++.|||+++||.....+...+|+.
T Consensus 401 ~~Lk~~~g~~~~~kl~~M~~D~~~S~~~~~~f~~~~~~~-------~~~~~~~~~~~~~vls~~~Wp~~~~~~~~~lP~~ 473 (588)
T PF00888_consen 401 EKLKKECGSSYTSKLEVMLKDIKNSKELNEEFKQKQSQN-------NIQLIPPFDFNVKVLSKGYWPKYPSENNIKLPPE 473 (588)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------T-SS--CCEEEEEEEETTTS-S-S-SS-----HH
T ss_pred HHHhcccCchhHHHHHHHHHHHhhcHHHHHHHHHHhhhc-------cccccCCCceEEEEecCCCCCCCCCCccccCCHH
Confidence 999999999999999999999999999999999876410 0011114789999999999999987644677777
Q ss_pred --------hhhhhhccCCce
Q 005659 668 --------SIIYSKDRHKIT 679 (685)
Q Consensus 668 --------E~~Y~k~y~~~~ 679 (685)
+.+|.++|++-|
T Consensus 474 l~~~~~~f~~~Y~~~~~~R~ 493 (588)
T PF00888_consen 474 LQQALDSFEKFYKEKHKGRK 493 (588)
T ss_dssp HHHHHHHHHHHHHTTSTTEE
T ss_pred HHHHHHHHHHHHHhcCCCcE
Confidence 599999998843
No 4
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.9e-15 Score=171.16 Aligned_cols=123 Identities=18% Similarity=0.232 Sum_probs=105.1
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhhCcccccchHHHHhhHHHHHHHHHHHHHHHhhh
Q 005659 547 LGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQ 626 (685)
Q Consensus 547 I~~Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~LelLK~RFGe~~l~~CEVMLKDI~dSKrin~~ik~~~~~~ 626 (685)
|..|+.+..+||+|.+.|+++||+|||++++.+.+.|..+|.+||..+|..+|+++|+|++||.-|+++...|+....
T Consensus 449 iitLfryv~~KDvFe~~Yk~~laKRLL~g~S~s~~~E~~mis~LKk~~g~~fT~Kle~Mf~DIsLS~e~~~af~~s~~-- 526 (773)
T COG5647 449 IITLFRYVEEKDVFEKYYKKLLAKRLLNGRSASAQAELKMISMLKKVCGQEFTSKLEGMFRDISLSSEFTEAFQHSPQ-- 526 (773)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchhHHHHHHHhhCch--
Confidence 446677779999999999999999999999999999999999999999999999999999999999999999986541
Q ss_pred hccCCccccCCCCCCcceEEEccCCCCCCCCCCccccCcch--------hhhhhhccCCcee
Q 005659 627 SLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMI--------SIIYSKDRHKITI 680 (685)
Q Consensus 627 ~~~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~L~p~--------E~~Y~k~y~~~~~ 680 (685)
......++.|.||++.|||.-+.+....||+. +.+|+-||++=|.
T Consensus 527 ---------s~~~~~Dl~v~VLt~a~WP~sp~~~~~~lP~~l~p~le~f~~~Y~sKhngRkL 579 (773)
T COG5647 527 ---------SYNKYLDLFVWVLTQAYWPLSPEEVSIRLPKELVPILEGFKKFYSSKHNGRKL 579 (773)
T ss_pred ---------hhccccchhHHHHHHhcCCCCccccccCCChHHHHHHHHHHHHHHHhccCceE
Confidence 11234789999999999996666556667644 6999999988654
No 5
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.4e-14 Score=161.39 Aligned_cols=126 Identities=22% Similarity=0.294 Sum_probs=106.2
Q ss_pred cchHHHHHHHhcChhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhhCcccccchHHHHhhHHHHHHHHHHHHHHH
Q 005659 544 VDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATI 623 (685)
Q Consensus 544 ~DiI~~Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~LelLK~RFGe~~l~~CEVMLKDI~dSKrin~~ik~~~ 623 (685)
.|-+-.||.++.+||+|...|++-||+|||-.++.++|+|.++|..||..||.++|+++|+|+|||.-||+|+..|+...
T Consensus 338 ~d~i~~lfr~i~gkdvfeA~ykkdLakrLLl~kSAsvdae~~ml~~lk~ecgs~ft~kLegMfkdme~sk~i~~~f~~~~ 417 (661)
T KOG2167|consen 338 LDKILVLFRFIHGKDVFEAFYKKDLAKRLLLGKSASVDAEKSMLSKLKLECGSAFTYKLEGMFKDMELSKEINRAFKQSK 417 (661)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccchhhcchhHHHHHhhhhcchHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred hhhhccCCccccCCCCCCcceEEEccCCCCCCCCCCccccCcch--------hhhhhhccCCce
Q 005659 624 EKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMI--------SIIYSKDRHKIT 679 (685)
Q Consensus 624 ~~~~~~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~L~p~--------E~~Y~k~y~~~~ 679 (685)
... .+... .-+.+.||+.+|||++.+. .+.|||+ +.||--+|++=|
T Consensus 418 ~~~--------~~~~~-~l~~v~vlt~~yWpty~~~-ev~Lp~em~~~~e~F~~fyl~k~sgrk 471 (661)
T KOG2167|consen 418 GAN--------NRLEG-NLLTVNVLTMGYWPTYPPM-EVLLPKEMRDCQEIFKKFYLGKHSGRK 471 (661)
T ss_pred Hhh--------ccCcC-CceEEEeecccccCCCCch-hccCCHHHHHHHHHHHHhccccccCcc
Confidence 210 11111 2289999999999999873 4455555 478888887544
No 6
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3.6e-14 Score=164.80 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=102.0
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhhCcccccchHHHHhhHHHHHHHHHHHHHHHhhh
Q 005659 547 LGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQ 626 (685)
Q Consensus 547 I~~Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~LelLK~RFGe~~l~~CEVMLKDI~dSKrin~~ik~~~~~~ 626 (685)
+.+|+..+.+||+|.+.|+++||+||++.++.+.+.|.++|.+||..+|.++++++++|++||..||.++..|+.....
T Consensus 410 v~~l~~yisdKdvF~~~Ykk~lakRLl~~~S~sdd~E~~mIsklk~~~g~~~T~kL~~Mf~D~~~s~~l~~~F~~~~~~- 488 (725)
T KOG2166|consen 410 VVKLLKYISDKDVFAEFYKKVLARRLLFDRSASDDHEKSLITKLKNLCGEQFTSKLEGMFTDLTLSRELQTAFADYANY- 488 (725)
T ss_pred ceeeeeeccHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhHHHHHHHhhcccHHHHHHHHHHHHhhhch-
Confidence 4467788899999999999999999999999889999999999999999999999999999999999999999865110
Q ss_pred hccCCccccCCCCCCcceEEEccCCCCCCCCCCccccCcch--------hhhhhhccCCce
Q 005659 627 SLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMI--------SIIYSKDRHKIT 679 (685)
Q Consensus 627 ~~~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~L~p~--------E~~Y~k~y~~~~ 679 (685)
.....+++.+.||+++|||.++.. ...||+. ..+|.-+|++=+
T Consensus 489 ---------~~~~~~df~v~VLt~g~WP~~~~~-~~~LP~el~~~~e~F~~~Y~~kh~gR~ 539 (725)
T KOG2166|consen 489 ---------SANLGIDFTVTVLTTGFWPSYKST-DINLPSEMSDCVEMFKGFYATKHNGRR 539 (725)
T ss_pred ---------hccCCCceeEEEeecCCcCCccCC-CCCCChhHHHHHHHHHHHHhhccCCCe
Confidence 111237899999999999997763 3344444 288988887643
No 7
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.7e-07 Score=100.46 Aligned_cols=71 Identities=25% Similarity=0.269 Sum_probs=66.6
Q ss_pred HHHhcChhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhhCcccccchHHHHhhHHHHHHHHHHHHHHH
Q 005659 551 VGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATI 623 (685)
Q Consensus 551 isi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~LelLK~RFGe~~l~~CEVMLKDI~dSKrin~~ik~~~ 623 (685)
|.++++||+|.++|.+|||+||+...+.+.|.|.-|+.+||..||..++++.- +.|++.|-.+|.+|.+.+
T Consensus 439 f~yi~dkdifqkfys~mla~rli~~~s~smd~ee~minklkqacgyefts~~~--~td~~~s~~lnn~f~~~i 509 (728)
T KOG2284|consen 439 FRYIEDKDIFQKFYSKMLANRLIASTSISMDAEELMINKLKQACGYEFTSSWP--LTDPQLSTNLNNQFAQDI 509 (728)
T ss_pred eeecccHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHhCceecccCC--CCChhhccccchhHHHHH
Confidence 44469999999999999999999999999999999999999999999999998 999999999999998766
No 8
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.8e-06 Score=91.14 Aligned_cols=122 Identities=14% Similarity=0.199 Sum_probs=98.3
Q ss_pred HHHHhcChhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHh-hCcccccchHHHHhhHHHHHHHHHHHHHHHhhhhc
Q 005659 550 IVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIH-FGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSL 628 (685)
Q Consensus 550 Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~LelLK~R-FGe~~l~~CEVMLKDI~dSKrin~~ik~~~~~~~~ 628 (685)
.+.+-..||+|....+..|+.||+-..+.|-++|..+++.|+.- +..++.+++..|++||..|+++|++|+.....
T Consensus 436 VLKYV~NKDVFMRyHkaHLtRRLIL~~SADsEkEE~mVewLREvGMPaDyVNkLaRMfQDIkvseDlN~~Fk~~~~~--- 512 (777)
T KOG2285|consen 436 VLKYVENKDVFMRYHKAHLTRRLILEMSADSEKEEMMVEWLREVGMPADYVNKLARMFQDIKVSEDLNSSFKKALTG--- 512 (777)
T ss_pred HhHhhcccHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccHHHHHHHHHHHhC---
Confidence 34666899999999999999999999999999999999999743 34789999999999999999999999987631
Q ss_pred cCCccccCCCCCCcceEEEccCCCCCCCCC--------CccccCcchhhhhhhccCCce
Q 005659 629 AGSELGEEGVSLGLLDATIISSNFWPPMQV--------WSTLFLIMISIIYSKDRHKIT 679 (685)
Q Consensus 629 ~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~--------~~~~~L~p~E~~Y~k~y~~~~ 679 (685)
+ .+......++.+||..+-|-.-.+ +-....|.-|-||.|+|++-|
T Consensus 513 ~-----~~~~~aDsiNiKiLNaGAW~R~SErv~vSLP~ELED~iPdveEfykk~hsgrk 566 (777)
T KOG2285|consen 513 T-----NNNSIADSINIKILNAGAWGRGSERVRVSLPRELEDFIPDVEEFYKKKHSGRK 566 (777)
T ss_pred C-----CCCCcccceeeeeecccccccccceEEEeCchhHHHhCccHHHHHhcccCccc
Confidence 1 122345679999999999987644 222344555799999999765
No 9
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.46 E-value=1.4e+02 Score=32.84 Aligned_cols=120 Identities=19% Similarity=0.310 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH--------HHHhhhhhhhcccCCchhHHHH--HHHHHhhcC--------h--------hh
Q 005659 350 EGLVRWRLRLEYFAYETLQD--------LRIAKLFEIIVDYPESSPAIED--LKQCLEYTG--------Q--------HS 403 (685)
Q Consensus 350 ~~~~~w~~~L~~~~y~~l~~--------lRI~ElFdIIvdyPdS~pAI~D--Lr~cL~~t~--------~--------r~ 403 (685)
..++-|+.|+.+..|-...= +-..-+=.+|.-||.-.|++.- .|.-|+--+ + -.
T Consensus 167 Ssv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~ 246 (366)
T KOG2796|consen 167 SSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD 246 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence 35889999999988765332 2223344466678888887642 122222111 1 11
Q ss_pred HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH---HhhCCCccchhhhchhhHHhhccCCchHHHHHHHhcC
Q 005659 404 KLVESFISALKYRLLTAGASTNDILHQYVSTIKAL---RTIDPTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTD 475 (685)
Q Consensus 404 ~Lv~sf~~~l~~RLLhpGa~T~dIL~~YIstIkaL---~iLDPsGVlL~~V~~PIr~YLR~R~DTVr~IV~~Ltd 475 (685)
.+.....---..|++|-|++. |+++.+++ -+.||+.-+-.---.-+.-||++=.|.|+.|-+++..
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn------~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNN------FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred ccchhHHHHhhhhhheecccc------hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222333334568999999986 88888887 3468887766655667788999999999999888753
No 10
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=31.42 E-value=2.9e+02 Score=31.03 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=46.2
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHHHhhCCCccchhhhchhhHHhh-----ccCCchHHHHHHHhcCCC
Q 005659 411 SALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYL-----RGRKDTIKCIVTMLTDGT 477 (685)
Q Consensus 411 ~~l~~RLLhpGa~T~dIL~~YIstIkaL~iLDPsGVlL~~V~~PIr~YL-----R~R~DTVr~IV~~Ltd~~ 477 (685)
+++..+|-.-|+++.|==..|+..-|+++.-+...--...++.-+-.|= .-|+|.+||||+.+.|++
T Consensus 148 k~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~dP~ 219 (378)
T KOG2753|consen 148 KQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNASEAREDAMRCVVEAVKDPK 219 (378)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCCc
Confidence 4677788888999999888888888888876642222222222232332 238999999999999864
No 11
>PF15469 Sec5: Exocyst complex component Sec5
Probab=31.33 E-value=1.1e+02 Score=30.23 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhCCCccchhhhchhhHHhhccC
Q 005659 403 SKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRGR 462 (685)
Q Consensus 403 ~~Lv~sf~~~l~~RLLhpGa~T~dIL~~YIstIkaL~iLDPsGVlL~~V~~PIr~YLR~R 462 (685)
...+..++..+..||+-|..+- ..+..+|+-|..|+|.| .||=.||..|
T Consensus 134 e~ii~~~r~~l~~~L~~~~~s~----~~~~~~i~~Ll~L~~~~-------dPi~~~l~~q 182 (182)
T PF15469_consen 134 EKIIEEFREKLWEKLLSPPSSQ----EEFLKLIRKLLELNVEE-------DPIWYWLESQ 182 (182)
T ss_pred HHHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHhCCCCC-------CHHHHHHHcC
Confidence 4678999999999999999776 44788899999999977 8988888765
No 12
>PF08361 TetR_C_2: MAATS-type transcriptional repressor, C-terminal region; InterPro: IPR013572 This entry is named after the various transcriptional regulatory proteins that it contains, including MtrR (Q6RV06 from SWISSPROT), AcrR (P34000 from SWISSPROT), ArpR (Q9KJC4 from SWISSPROT), TtgR (Q9AIU0 from SWISSPROT) and SmeT (Q8KLP4 from SWISSPROT). These are members of the TetR (tetracycline resistance) family of transcriptional repressors, that are involved in the control of expression of multidrug resistance proteins [, , ]. ; GO: 0003677 DNA binding; PDB: 3BCG_B 2QOP_A 2UXP_B 2XDN_C 2UXH_A 2UXI_B 2UXO_A 2UXU_B 2WUI_A 2W53_A ....
Probab=23.15 E-value=6e+02 Score=23.42 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhc---ccCCchhHHHHH-HHHHhhcChhhHHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Q 005659 359 LEYFAYETLQDLRIAKLFEIIV---DYPESSPAIEDL-KQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVST 434 (685)
Q Consensus 359 L~~~~y~~l~~lRI~ElFdIIv---dyPdS~pAI~DL-r~cL~~t~~r~~Lv~sf~~~l~~RLLhpGa~T~dIL~~YIst 434 (685)
+.+.+-..-.+-|...+|+|+- +|-+...++.+- +.+.. ..+..+...|..+.++..|+|+++....-...-+.
T Consensus 10 ~~~~l~~l~~d~~~Rrv~~I~~~kcE~~~e~~~~~~r~~~~~~--~~~~~i~~~l~~A~~~g~L~~~ld~~~AA~~l~a~ 87 (121)
T PF08361_consen 10 LIEALRRLAEDERQRRVFEILFHKCEYVEEMAPVRERRREAQR--EALARIERLLRRAQARGQLPADLDPRLAAIMLHAL 87 (121)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHS--SSTTTHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTSS-TTB-HHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHhcccCCcccHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Confidence 3344444456678889999887 787766666554 44433 23567889999999999999999988776666666
Q ss_pred HHHHHh---hCCCccchhhhch
Q 005659 435 IKALRT---IDPTGVFLEAVGE 453 (685)
Q Consensus 435 IkaL~i---LDPsGVlL~~V~~ 453 (685)
+..+-. ++|..-=|...+.
T Consensus 88 ~~Gl~~~WL~~p~~fdL~~~a~ 109 (121)
T PF08361_consen 88 LSGLIQNWLLDPESFDLAEQAE 109 (121)
T ss_dssp HHHHHHHHHHSTTTS-HHHHHH
T ss_pred HHHHHHHHHcCCccCCHHHHHH
Confidence 655543 5766554544443
Done!