Query 005659
Match_columns 685
No_of_seqs 201 out of 322
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hye_C Cullin-4A, CUL-4A; beta 99.9 1.9E-22 6.5E-27 234.0 27.7 282 363-679 258-566 (759)
2 3dpl_C Cullin-5; ubiquitin, NE 99.8 3.9E-21 1.3E-25 207.2 8.5 128 544-680 36-173 (382)
3 1ldj_A Cullin homolog 1, CUL-1 99.8 1.3E-19 4.3E-24 210.5 11.7 126 544-680 430-563 (760)
4 2d2s_A Exocyst complex compone 20.2 1.4E+02 0.0048 29.8 5.9 37 250-286 93-129 (235)
5 1u84_A Hypothetical protein; s 15.4 2.6E+02 0.0089 24.3 5.7 54 20-82 11-64 (90)
6 4eoz_B Cullin-3, CUL-3; E3 ubi 12.5 3E+02 0.01 28.6 6.4 64 24-87 12-75 (364)
7 2jo7_A Glycosylphosphatidylino 12.5 2.3E+02 0.0078 28.0 4.9 72 388-468 3-77 (224)
8 4ap2_B Cullin-3, CUL-3; ubiqui 12.5 3.4E+02 0.011 29.0 6.9 64 24-87 29-92 (410)
9 2oez_A UPF0289 protein VP2528; 8.7 9E+02 0.031 24.4 8.1 49 387-436 46-97 (247)
10 4a64_A Cullin-4B, CUL4B, CUL-4 8.4 5.1E+02 0.017 26.8 6.3 59 26-85 11-70 (354)
No 1
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=99.90 E-value=1.9e-22 Score=234.02 Aligned_cols=282 Identities=18% Similarity=0.225 Sum_probs=183.8
Q ss_pred HHHHHHHHHHhhhhhhhcccCCchhHHHHHHHHHhhcChhhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhC
Q 005659 363 AYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTID 442 (685)
Q Consensus 363 ~y~~l~~lRI~ElFdIIvdyPdS~pAI~DLr~cL~~t~~r~~Lv~sf~~~l~~RLLhpGa~T~dIL~~YIstIkaL~iLD 442 (685)
-|-..+..|+.|-++.+..|+++ .+...|..|+++.-...++..-+.+.|.. ||. +-.+.|+-..|.-..|.
T Consensus 258 ~Yl~~~e~rl~eE~~r~~~yL~~-~t~~~l~~~~~~~Li~~~~~~ll~~~~~~-lL~-~~~~~dL~~mY~L~~rv----- 329 (759)
T 2hye_C 258 EYLNHVSKRLEEEGDRVITYLDH-STQKPLIACVEKQLLGEHLTAILQKGLDH-LLD-ENRVPDLAQMYQLFSRV----- 329 (759)
T ss_dssp HHHHHHHHHHHHTHHHHTTTSCT-TTHHHHHHHHHHHHTTTCSHHHHHTTHHH-HHT-TTCHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHh-cCCHHHHHHHHHHHccC-----
Confidence 36778899999999999999998 78999999988764433222111123433 554 45788888888665552
Q ss_pred CCccchhhhchhhHHhhccCCchHHHHHHHhcCCCCCCCCCCCCCcccHHHHhccCccc---ccccCCCCCCCc--chhh
Q 005659 443 PTGVFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGTGGNPNGSGNAGDSLLEELNRDEEN---QENIGVDDGFNI--DDKQ 517 (685)
Q Consensus 443 PsGVlL~~V~~PIr~YLR~R~DTVr~IV~~Ltd~~~~~~~~~~~~~~~L~eEL~~~~~~---~~~~~~ddd~~~--d~~~ 517 (685)
| .-|+.++.+++.|++++...+- .+..+ .....+.|-.-... .-......+... --+.
T Consensus 330 ~--~~l~~l~~~~~~~I~~~g~~iv------~~~~~---------~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~ 392 (759)
T 2hye_C 330 R--GGQQALLQHWSEYIKTFGTAIV------INPEK---------DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKE 392 (759)
T ss_dssp T--THHHHHHHHHHHHHHHHHHHHH------SCGGG---------TTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred c--chHHHHHHHHHHHHHHHhHHHh------cCccc---------HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2 3588999999999999876542 11100 01222222110000 000001111000 0001
Q ss_pred hhhcCCCccCC-CCC-------CCCCCCCCCc------cccchHHHHHHHhcChhHHHHHHHHHHHHHhccCCCCChhHH
Q 005659 518 AWINAVCWEPD-PVE-------ADPLKGSRNR------RKVDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSE 583 (685)
Q Consensus 518 ~w~~~~~W~Pd-Pid-------A~p~~~~k~~------k~~DiI~~Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E 583 (685)
.+....|+.+. |.+ ....++.+.. ...|-+-.||+++++||+|+++|+++||+|||..++++.+.|
T Consensus 393 af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E 472 (759)
T 2hye_C 393 SFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAE 472 (759)
T ss_dssp HHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHH
Confidence 11112343221 111 1001111110 123456678889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCcccccchHHHHhhHHHHHHHHHHHHHHHhhhhccCCccccCCCCCCcceEEEccCCCCCCCCCCcccc
Q 005659 584 IRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLF 663 (685)
Q Consensus 584 ~~~LelLK~RFGe~~l~~CEVMLKDI~dSKrin~~ik~~~~~~~~~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~ 663 (685)
.++|++||.+||++++++|++||+||..|+++|.+|++..... ......++++.|||++|||.++.. ...
T Consensus 473 ~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~---------~~~~~~~~~v~VLs~~~WP~~~~~-~~~ 542 (759)
T 2hye_C 473 KSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQ---------SDSGPIDLTVNILTMGYWPTYTPM-EVH 542 (759)
T ss_dssp HHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CCCCCCEEEEEEEETTTSCCCCCC-CCC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------cCCCCCceEEEEeCCCCCCCCCCC-CCc
Confidence 9999999999999999999999999999999999999875310 111236899999999999999764 556
Q ss_pred Ccch--------hhhhhhccCCce
Q 005659 664 LIMI--------SIIYSKDRHKIT 679 (685)
Q Consensus 664 L~p~--------E~~Y~k~y~~~~ 679 (685)
+|+. +.+|.++|++=|
T Consensus 543 lP~~l~~~~~~F~~fY~~~~~gRk 566 (759)
T 2hye_C 543 LTPEMIKLQEVFKAFYLGKHSGRK 566 (759)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCSEE
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCE
Confidence 6666 588888887644
No 2
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=99.83 E-value=3.9e-21 Score=207.25 Aligned_cols=128 Identities=14% Similarity=0.180 Sum_probs=106.3
Q ss_pred cchHHHHHHHhcChhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhhCc--ccccchHHHHhhHHHHHHHHHHHHH
Q 005659 544 VDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGE--SSMQRCEIMLNDLIDSKRTNANIKA 621 (685)
Q Consensus 544 ~DiI~~Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~LelLK~RFGe--~~l~~CEVMLKDI~dSKrin~~ik~ 621 (685)
-|-+-.||+++++||+|+++|+++||+|||+.++++.+.|+++|++|| +||. +++++||+||+||..|+++|.+|++
T Consensus 36 L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kLK-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~ 114 (382)
T 3dpl_C 36 LKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR-EVGMPADYVNKLARMFQDIKVSEDLNQAFKE 114 (382)
T ss_dssp HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999999999999999999999999999999999 9997 9999999999999999999999997
Q ss_pred HHhhhhccCCccccCCCCCCcceEEEccCCCCCCCCCCccccCcch--------hhhhhhccCCcee
Q 005659 622 TIEKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMI--------SIIYSKDRHKITI 680 (685)
Q Consensus 622 ~~~~~~~~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~L~p~--------E~~Y~k~y~~~~~ 680 (685)
.... . .......++++.|||++|||..+...+..+|+. +.+|.++|++=|.
T Consensus 115 ~~~~---~-----~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL 173 (382)
T 3dpl_C 115 MHKN---N-----KLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKL 173 (382)
T ss_dssp HTCC---C-------CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHHHHHHTTSSSEEE
T ss_pred HHhh---c-----CCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhcCCCCEE
Confidence 6521 0 001123689999999999999864446666665 5889888876543
No 3
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=99.79 E-value=1.3e-19 Score=210.47 Aligned_cols=126 Identities=21% Similarity=0.241 Sum_probs=108.1
Q ss_pred cchHHHHHHHhcChhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhhCcccccchHHHHhhHHHHHHHHHHHHHHH
Q 005659 544 VDILGMIVGIIGSKDQLVNEYRVMLADKLLNKSDYEIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNANIKATI 623 (685)
Q Consensus 544 ~DiI~~Lisi~~SKd~Fv~EY~~lLA~RLL~~~~y~~d~E~~~LelLK~RFGe~~l~~CEVMLKDI~dSKrin~~ik~~~ 623 (685)
-|-+.+||+++++||+|+++|+++||+|||..++++.+.|+++|++||.+||++++++|++||+||..|+++|.+|++..
T Consensus 430 L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~ 509 (760)
T 1ldj_A 430 LNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHL 509 (760)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577899999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred hhhhccCCccccCCCCCCcceEEEccCCCCCCCCCCccccCcch--------hhhhhhccCCcee
Q 005659 624 EKQSLAGSELGEEGVSLGLLDATIISSNFWPPMQVWSTLFLIMI--------SIIYSKDRHKITI 680 (685)
Q Consensus 624 ~~~~~~~~~~~~~~~s~~~l~a~ILS~~FWP~~~~~~~~~L~p~--------E~~Y~k~y~~~~~ 680 (685)
.. ......++++.|||++|||.++.. ...+||. +.+|.++|++=|.
T Consensus 510 ~~----------~~~~~~~~~v~VLs~~~WP~~~~~-~~~lP~~l~~~~~~F~~fY~~~~~~RkL 563 (760)
T 1ldj_A 510 TN----------SEPLDLDFSIQVLSSGSWPFQQSC-TFALPSELERSYQRFTAFYASRHSGRKL 563 (760)
T ss_dssp TT----------TCCCSSEEEEEEEETTTSCCCCCS-CCCCCGGGHHHHHHHHHHTTTTCTTCCE
T ss_pred hc----------ccCCCCCeeEEecCCCCCCCCCCC-CCcCCHHHHHHHHHHHHHHHHhCCCCeE
Confidence 31 011237899999999999999653 6667766 5888887776443
No 4
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=20.17 E-value=1.4e+02 Score=29.78 Aligned_cols=37 Identities=8% Similarity=0.240 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHH
Q 005659 250 HIGKVVHDLRTLGFTSMTENAYASAIFSLLKAKVHNL 286 (685)
Q Consensus 250 ~~~~~~~~L~~lgl~~~~e~~~~svl~~~I~~~v~~~ 286 (685)
.+...+..|.+||.++.|-++|=..-...|+..+...
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l 129 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQI 129 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHh
Confidence 3456678889999998899999888888899888765
No 5
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=15.36 E-value=2.6e+02 Score=24.31 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=41.5
Q ss_pred hhHHHHHHHhhhhhhhhccccCCCCCccchhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 005659 20 ESVQEIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFER 82 (685)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~le~~l~~ 82 (685)
..+.++...||-| +.|....+.|....++.+....-.+.|.+-+-...+..|..
T Consensus 11 ~~~~~iI~~WDPf---------~~g~D~Y~~Ei~~Iv~av~~~d~~~~LA~~Iq~If~~SFee 64 (90)
T 1u84_A 11 RLLLEWIGAWDPF---------GLGKDAYDVEAASVLQAVYETEDARTLAARIQSIYEFAFDE 64 (90)
T ss_dssp HHHHHHHHHHCTT---------SSCGGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCC---------cCCCccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Confidence 5678999999988 44677799999999999988887666666655555555544
No 6
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=12.50 E-value=3e+02 Score=28.63 Aligned_cols=64 Identities=5% Similarity=-0.042 Sum_probs=48.2
Q ss_pred HHHHHhhhhhhhhccccCCCCCccchhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcchhh
Q 005659 24 EIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSK 87 (685)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~le~~l~~~~~p~ 87 (685)
.+-+.|+.+-++-.+...+...--.=+++=..++.+|.++.++.+++.+-+.+++.+..++.|.
T Consensus 12 ~~~~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~ 75 (364)
T 4eoz_B 12 YVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVRED 75 (364)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888776665666554332122356777889999999999999999999999999888776
No 7
>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens}
Probab=12.48 E-value=2.3e+02 Score=28.01 Aligned_cols=72 Identities=19% Similarity=0.358 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhhCCCccchhhhchhhHHhhcc---CCc
Q 005659 388 AIEDLKQCLEYTGQHSKLVESFISALKYRLLTAGASTNDILHQYVSTIKALRTIDPTGVFLEAVGEPIRDYLRG---RKD 464 (685)
Q Consensus 388 AI~DLr~cL~~t~~r~~Lv~sf~~~l~~RLLhpGa~T~dIL~~YIstIkaL~iLDPsGVlL~~V~~PIr~YLR~---R~D 464 (685)
++++||.-|. ++|..+..++.. .-|..|.-=|.-|...|-.=..|--......+.+..|+.||.. +.|
T Consensus 3 tLe~lR~Elk--~qRE~~Ls~Ii~-------sdGp~tIlQLid~LRiidtDlLlkVD~~~V~kAG~kVK~YLesiGI~G~ 73 (224)
T 2jo7_A 3 TLDVLRGELR--GQREAFLSEIIK-------SDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIRGD 73 (224)
T ss_dssp CHHHHHHHHH--HHHHHHHHHHHH-------CCSCCCTTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cHHHHHHHHH--HHHHHHHHHHHc-------cCCCeeHHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6788888776 567666665544 3599999889999999998888878888899999999999986 667
Q ss_pred hHHH
Q 005659 465 TIKC 468 (685)
Q Consensus 465 TVr~ 468 (685)
-|..
T Consensus 74 sVEe 77 (224)
T 2jo7_A 74 SVEA 77 (224)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 7753
No 8
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=12.47 E-value=3.4e+02 Score=28.97 Aligned_cols=64 Identities=5% Similarity=-0.042 Sum_probs=48.8
Q ss_pred HHHHHhhhhhhhhccccCCCCCccchhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcchhh
Q 005659 24 EIIESYNGFCATTNSLLNGGRDIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFVSK 87 (685)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~le~~l~~~~~p~ 87 (685)
.+-+.|+.+-++-.....+...-..=+++=..++.+|.++.++.+++.+-+.+++.+...+.|.
T Consensus 29 ~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~ 92 (410)
T 4ap2_B 29 YVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVRED 92 (410)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558899886666666654332222356777889999999999999999999999999888777
No 9
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=8.72 E-value=9e+02 Score=24.44 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhhcChhhHHHHHH---HHHHHHhhccCCCChHHHHHHHHHHHH
Q 005659 387 PAIEDLKQCLEYTGQHSKLVESF---ISALKYRLLTAGASTNDILHQYVSTIK 436 (685)
Q Consensus 387 pAI~DLr~cL~~t~~r~~Lv~sf---~~~l~~RLLhpGa~T~dIL~~YIstIk 436 (685)
-+|-||=.++++.+.|+.|++.+ +..++.=.-+|||++..+ ..++.-|+
T Consensus 46 ~~Lfelldv~~R~dlK~eLlKeLERq~~~L~~~~~~P~Vd~~~l-~~~l~~l~ 97 (247)
T 2oez_A 46 RALFDMVEIFEQIQLKSELAKDLEKQRLSYRHWLNVEGVDQEAL-NSLLNEID 97 (247)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTCTTSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHH-HHHHHHHH
Confidence 46778888999999999999988 445666667999998654 44444433
No 10
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=8.44 E-value=5.1e+02 Score=26.80 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=42.9
Q ss_pred HHHhhhhhhhhccccCCCC-CccchhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcch
Q 005659 26 IESYNGFCATTNSLLNGGR-DIAVGKEFVTHVRSLCKHGLQSLAHGHFLRSLEETFERTFV 85 (685)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~le~~l~~~~~ 85 (685)
-+.|+.+-++-.++..+.. ..| -+++=..++.+|.++.++.+.+.+-+.++..++..+.
T Consensus 11 ~~~W~~L~~ai~~I~~~~~~~~s-~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~ 70 (354)
T 4a64_A 11 DETWQKLKEAVEAIQNSTSIKYN-LEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIH 70 (354)
T ss_dssp THHHHHHHHHHHHHHTTCCCCSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4567766555555554322 233 3567778899999999999999999999999988664
Done!