BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>005660
MESTPVNWEALDALILEFAKSENLIEDSIVSSPPSSPSSSSTSSVSLSSSSYHSRLIIRQ
IRRSLEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINCLRT
ALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRAHLH
AYDPVFAMTLRYLIRLLLEERDPPATPQESLYEAPPFDEVDIQALAHAVKITRQGAVDSL
RFARGDLFQAFQNELCQMRLDVSMLDELVREYCVYRGIVDSGLSTPSGTQTISIPIKVDK
PESGCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGSPENNTDVISIQGADVELRFTGGP
TGSNEDCSTSGSHQPESSRVLRSRSHGSGERNKRKRWRERQDDFCYNPEISLGGCNKREL
NSSTLIPSTIMSREQQENYEIVLGMKELAGKGMAAEAVEEINAMDADFFVQNPMLLFQLK
QVEFLKLVSCGDHSGALRVACAHLGPLAASHPALLKPLKETLLALLQPNEDVLVKGFPLH
TLATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQMCKDRFESLLRIDLLKEVYTP
FLATVAMSKSHADSTQGSSQITISSNARVSEDGSSPNQVSSADFVCDENAILKVMEFLAL
PRADAIHLLAQYNGNAETVIQQIFA

High Scoring Gene Products

Symbol, full name Information P value
AT5G66810 protein from Arabidopsis thaliana 4.5e-146
DDB_G0279265
UPF0559 protein
gene from Dictyostelium discoideum 0.00047

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  005660
        (685 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2175014 - symbol:AT5G66810 "AT5G66810" species...  1427  4.5e-146  1
DICTYBASE|DDB_G0279265 - symbol:DDB_G0279265 "UPF0559 pro...   115  0.00047   1


>TAIR|locus:2175014 [details] [associations]
            symbol:AT5G66810 "AT5G66810" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0006486 "protein glycosylation" evidence=RCA]
            [GO:0006623 "protein targeting to vacuole" evidence=RCA]
            [GO:0016192 "vesicle-mediated transport" evidence=RCA]
            EMBL:CP002688 InterPro:IPR024964 Pfam:PF10607 PROSITE:PS50897
            InterPro:IPR006595 SMART:SM00668 IPI:IPI00522103 RefSeq:NP_201482.2
            UniGene:At.28848 PRIDE:F4K250 EnsemblPlants:AT5G66810.1
            GeneID:836814 KEGG:ath:AT5G66810 OMA:DAYPEAY ArrayExpress:F4K250
            Uniprot:F4K250
        Length = 750

 Score = 1427 (507.4 bits), Expect = 4.5e-146, P = 4.5e-146
 Identities = 337/710 (47%), Positives = 422/710 (59%)

Query:     1 MESTPVNWEALDALILEFAKSENLIEDXXXXXXXX---XXXXXXXXXXXXXXXXYHXXXX 57
             M+STPVNWEALDALI++F  SENL+ED                           YH    
Sbjct:    57 MDSTPVNWEALDALIIDFVSSENLVEDAAAAVNSPPSPLSSPSSSSSPSISSSSYHSRLI 116

Query:    58 XXXXXXXXEYGDIDAAIDLLRAHAPFILDDHRLLFRLQKQKFIELLRRGTTEDRKSAINC 117
                     E GDI+ AID+LR+HAPF+LDDHR+LFRLQKQKFIELLR+GT E   +AI+C
Sbjct:   117 IRRIRSSIESGDIETAIDILRSHAPFVLDDHRILFRLQKQKFIELLRKGTHE---AAIDC 173

Query:   118 LRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAGLMSSVLRA 177
             LRT +APCALDAYPEAYEEFKHVLL  IYDKDD TSPVA EWAE+RR+E+AGLMSSVLRA
Sbjct:   174 LRTCVAPCALDAYPEAYEEFKHVLLALIYDKDDQTSPVANEWAEKRRYEMAGLMSSVLRA 233

Query:   178 HLHAYDPVFAMTXXXXXXXXX--------XXXDPPATPQESLYE--AP--PFDEVDIQAL 225
              L AYDPVF+MT                        T +  L E  AP  P + +     
Sbjct:   234 SLQAYDPVFSMTLRYLISIHKGFCFHQGISSAVSDLTHRLLLEERDAPATPIESMYEVPP 293

Query:   226 AHAVKITRQG-AVDSLRFARGDLFQAFQNELCQM---RLDVSMLDELVREYCVYRGIVDS 281
                V I     AV+  R    D  +  + +L Q     L    LD  V +  V    +  
Sbjct:   294 FDEVDIQALAHAVELTRQGAVDSMKFAKGDLFQAFQNELCRMRLDVSVLDELVKEYCIYR 353

Query:   282 GLSTPSGTQTISIPIKVDKPESGCCSSRNCSLEMDCSISKNSDGETSVSNTIMDGSPENN 341
             G+   S  Q I+IP K ++ E G   SR+CS E+D + S++SD E   + +++DGS   +
Sbjct:   354 GI-VDSEMQMITIPAKRNQSEVGRSLSRDCSSEIDLNTSQHSDIENYSNKSMLDGSLTYD 412

Query:   342 TDVISIQGADVELRFTGGPTGSNEDCSTSGSHQPESSR-VLRSRSHGSGERNKRKRWRER 400
             T++   +G DV  R+   PT   EDCSTS S+Q E++R +LR RSH + E NKRKRW  R
Sbjct:   413 TEMSCEEGGDVGTRYGSEPTSVCEDCSTSWSNQCENTRALLRIRSHMNSEGNKRKRWCGR 472

Query:   401 QDDFCYNPEISLGGCNKRELNSSTLIPSTIMSREQQENYEIVLGMKELAGKGMAAEAVEE 460
               +    P IS          S T   + I     ++ YEI L +KEL  +GMAAEA  E
Sbjct:   473 TAEMDCLPRISFANSE-----SGT---NPI-----EDKYEIALALKELVSRGMAAEAFSE 519

Query:   461 INAMDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGPLAASHXXXXXXXXX 520
             I+ MD DFF QNP LLF LKQVEFLKLVS GDH+GAL+VAC HLGPLAA+          
Sbjct:   520 ISTMDPDFFTQNPGLLFHLKQVEFLKLVSAGDHNGALKVACFHLGPLAANDQSLLKTLKE 579

Query:   521 XXXXXXQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKILRATLHTHNEWFKLQM 580
                   QP+     K  PL+ LA +LQV++G RLGIEEP+LMKI++ATLHTH EWFKLQM
Sbjct:   580 TLLVLLQPDGTAPGKDLPLNDLANTLQVSVGNRLGIEEPKLMKIIKATLHTHTEWFKLQM 639

Query:   581 CKDRFESLLRIDLLKEVYTPFLATV-AMSKSHADXXXXXXXXXXXXNARVSEDGSSPN-- 637
             CKDRF +LL+ID LKEV T  +  + + SK  ++            +   SEDG S +  
Sbjct:   640 CKDRFNNLLKIDSLKEVNTDLIGAIKSKSKKDSNTNLSSQVTTTSSSTMTSEDGGSSSLM 699

Query:   638 ---QVSSADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684
                Q    + + +E+AILKVMEFLA+PR+DAI LL+QYNG+AE VIQQ+F
Sbjct:   700 MMTQTLPREALWEESAILKVMEFLAMPRSDAIQLLSQYNGDAEAVIQQLF 749


>DICTYBASE|DDB_G0279265 [details] [associations]
            symbol:DDB_G0279265 "UPF0559 protein" species:44689
            "Dictyostelium discoideum" [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR006594 PROSITE:PS50896 SMART:SM00667
            dictyBase:DDB_G0279265 GO:GO:0005634 InterPro:IPR013720
            Pfam:PF08513 EMBL:AAFI02000030 InterPro:IPR024964 Pfam:PF10607
            PROSITE:PS50897 InterPro:IPR013144 InterPro:IPR006595 SMART:SM00757
            SMART:SM00668 eggNOG:NOG246577 OMA:LVNQLHP RefSeq:XP_641761.2
            EnsemblProtists:DDB0305011 GeneID:8621959 KEGG:ddi:DDB_G0279265
            ProtClustDB:CLSZ2497227 Uniprot:Q54X16
        Length = 228

 Score = 115 (45.5 bits), Expect = 0.00047, P = 0.00047
 Identities = 36/119 (30%), Positives = 63/119 (52%)

Query:    68 GDIDAAIDLLRAHAPFILDDH-RLLFRLQKQKFIELLRRGTTEDRKSAINCLRTALAPCA 126
             GD++  I+++    P ILD + +L F LQ+QK IEL+R+G T +   A+   +  LAP  
Sbjct:    81 GDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAE---ALKFAQDELAPQG 137

Query:   127 LDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWAERRRFEIAG-LMSSVLRAHLHAYDP 184
              +   +  EE +  +   +++ D   SP++      +R + AG L S++L +     DP
Sbjct:   138 -EENNKFLEELEKTISLLVFE-DTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQDKDP 194


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      685       610   0.00087  120 3  11 22  0.39    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  332 KB (2168 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  49.28u 0.10s 49.38t   Elapsed:  00:00:02
  Total cpu time:  49.28u 0.10s 49.38t   Elapsed:  00:00:02
  Start:  Thu May  9 18:05:36 2013   End:  Thu May  9 18:05:38 2013

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