Query 005660
Match_columns 685
No_of_seqs 241 out of 626
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2di0_A Activating signal coint 89.4 0.45 1.6E-05 40.2 5.0 40 645-684 11-51 (71)
2 1veg_A NEDD8 ultimate buster-1 88.6 1.5 5.1E-05 38.0 7.8 46 638-684 20-65 (83)
3 1vg5_A RSGI RUH-014, rhomboid 88.6 1.4 4.7E-05 37.3 7.4 41 644-685 26-66 (73)
4 2g3q_A Protein YBL047C; endocy 86.9 0.69 2.4E-05 34.5 4.2 38 647-685 4-41 (43)
5 2ekk_A UBA domain from E3 ubiq 86.5 1.4 4.8E-05 33.6 5.8 42 642-685 4-45 (47)
6 2dak_A Ubiquitin carboxyl-term 84.5 1.5 5.3E-05 35.5 5.4 38 646-684 8-45 (63)
7 2cpw_A CBL-interacting protein 84.4 2.3 8E-05 34.7 6.5 39 646-685 18-57 (64)
8 1uuj_A Platelet-activating fac 83.1 0.59 2E-05 41.0 2.5 31 8-38 10-40 (88)
9 2d9s_A CBL E3 ubiquitin protei 81.4 1.5 5.1E-05 35.1 4.0 30 648-678 10-39 (53)
10 1z96_A DNA-damage, UBA-domain 81.0 2.1 7.1E-05 31.0 4.5 36 648-684 5-40 (40)
11 2ooa_A E3 ubiquitin-protein li 81.0 1.5 5.2E-05 34.9 3.9 30 648-678 12-41 (52)
12 1tr8_A Conserved protein (MTH1 78.6 2.4 8.2E-05 37.9 4.9 38 215-252 62-99 (102)
13 1vej_A Riken cDNA 4931431F19; 78.4 7 0.00024 33.0 7.5 42 643-685 26-67 (74)
14 1wji_A Tudor domain containing 76.5 4 0.00014 33.3 5.3 38 646-684 8-45 (63)
15 1wj7_A Hypothetical protein (R 75.9 3.5 0.00012 37.1 5.2 38 648-685 40-77 (104)
16 2xtc_A F-box-like/WD repeat-co 73.8 3.3 0.00011 36.4 4.4 35 5-39 2-36 (90)
17 1wiv_A UBP14, ubiquitin-specif 73.7 6.6 0.00023 32.8 6.1 54 198-252 9-62 (73)
18 2dai_A Ubadc1, ubiquitin assoc 72.5 6 0.00021 34.0 5.7 40 644-684 26-65 (83)
19 2dah_A Ubiquilin-3; UBA domain 71.8 8.9 0.0003 30.3 6.1 36 648-684 10-46 (54)
20 1whc_A RSGI RUH-027, UBA/UBX 3 71.6 5 0.00017 32.7 4.7 40 644-684 6-46 (64)
21 2dkl_A Trinucleotide repeat co 69.0 6.7 0.00023 33.9 5.2 41 644-685 18-58 (85)
22 1ify_A HHR23A, UV excision rep 67.9 4.3 0.00015 31.3 3.4 37 647-684 8-44 (49)
23 1vek_A UBP14, ubiquitin-specif 67.6 17 0.00058 31.2 7.5 41 643-684 25-66 (84)
24 2jy5_A Ubiquilin-1; UBA, alter 67.3 13 0.00043 29.1 6.0 38 648-685 13-50 (52)
25 2dag_A Ubiquitin carboxyl-term 67.1 11 0.00036 31.7 5.9 40 644-684 6-46 (74)
26 2dzl_A Protein FAM100B; UBA-li 63.8 15 0.00052 30.2 6.1 41 644-684 10-54 (66)
27 1v92_A NSFL1 cofactor P47; 3-h 60.8 12 0.0004 27.8 4.6 37 648-684 6-42 (46)
28 1wiv_A UBP14, ubiquitin-specif 58.0 15 0.0005 30.7 5.1 38 646-684 28-65 (73)
29 1wr1_B Ubiquitin-like protein 54.6 18 0.00063 29.0 5.0 41 643-684 14-54 (58)
30 2dal_A Protein KIAA0794; FAS a 54.5 16 0.00056 29.4 4.8 37 648-684 16-52 (62)
31 2knz_A Ubiquilin-4; cytoplasm, 52.3 12 0.00042 29.2 3.6 36 648-684 12-48 (53)
32 1vyh_C Platelet-activating fac 50.8 3.2 0.00011 42.8 0.0 32 7-38 7-38 (410)
33 1z96_A DNA-damage, UBA-domain 49.1 17 0.00059 26.0 3.7 33 219-252 5-37 (40)
34 2lbc_A Ubiquitin carboxyl-term 48.7 27 0.00092 31.5 5.8 42 643-685 74-115 (126)
35 2ekk_A UBA domain from E3 ubiq 48.7 30 0.001 26.1 5.2 37 214-252 5-41 (47)
36 2dak_A Ubiquitin carboxyl-term 48.4 22 0.00076 28.5 4.6 37 215-252 6-42 (63)
37 2ooa_A E3 ubiquitin-protein li 47.1 21 0.00071 28.5 4.1 30 220-250 13-42 (52)
38 2bwb_A Ubiquitin-like protein 45.4 31 0.001 26.3 4.7 38 648-685 8-45 (46)
39 1wji_A Tudor domain containing 43.8 27 0.00092 28.3 4.4 36 215-251 6-41 (63)
40 2dag_A Ubiquitin carboxyl-term 43.1 37 0.0013 28.3 5.3 38 214-252 5-43 (74)
41 2vxg_A LD41624, GE-1, CG6181-P 43.0 35 0.0012 31.8 5.7 47 440-489 2-62 (139)
42 2g3q_A Protein YBL047C; endocy 42.4 22 0.00076 26.2 3.5 34 218-252 4-37 (43)
43 1tr8_A Conserved protein (MTH1 42.2 31 0.001 30.8 4.9 37 644-680 62-98 (102)
44 2crn_A Ubash3A protein; compac 41.1 36 0.0012 27.7 4.8 39 645-684 7-46 (64)
45 2d9s_A CBL E3 ubiquitin protei 40.5 32 0.0011 27.5 4.2 31 219-250 10-40 (53)
46 2dam_A ETEA protein; KIAA0887, 40.0 44 0.0015 27.4 5.2 35 650-684 21-56 (67)
47 1dv0_A DNA repair protein HHR2 39.4 9.9 0.00034 29.1 1.1 38 647-685 4-41 (47)
48 2dai_A Ubadc1, ubiquitin assoc 38.9 40 0.0014 28.8 5.0 36 216-252 27-62 (83)
49 2cpw_A CBL-interacting protein 37.2 47 0.0016 26.9 4.9 35 217-252 18-53 (64)
50 1whc_A RSGI RUH-027, UBA/UBX 3 36.4 36 0.0012 27.6 4.1 37 215-252 6-43 (64)
51 1wgn_A UBAP1, ubiquitin associ 35.3 34 0.0012 28.2 3.7 32 218-250 19-50 (63)
52 1vek_A UBP14, ubiquitin-specif 33.4 54 0.0018 28.0 4.9 38 214-252 25-63 (84)
53 3qwp_A SET and MYND domain-con 32.4 2E+02 0.0069 30.7 10.4 125 440-569 289-420 (429)
54 2lni_A Stress-induced-phosphop 31.4 97 0.0033 24.8 6.1 59 438-504 16-77 (133)
55 1etf_B REV peptide; complex (R 30.1 9.1 0.00031 26.5 -0.4 13 390-402 6-18 (26)
56 2xcb_A PCRH, regulatory protei 29.3 71 0.0024 27.2 5.2 51 445-503 25-78 (142)
57 2d68_A FOP, FGFR1OP; alpha hel 29.1 20 0.00068 30.9 1.4 30 9-38 19-48 (82)
58 2nxp_A Transcription initiatio 27.9 49 0.0017 31.0 4.1 65 88-160 50-114 (156)
59 2vgx_A Chaperone SYCD; alterna 27.3 81 0.0028 27.6 5.3 49 446-502 29-80 (148)
60 1veg_A NEDD8 ultimate buster-1 27.3 81 0.0028 27.2 5.0 36 216-252 27-62 (83)
61 2lbc_A Ubiquitin carboxyl-term 26.1 1.7E+02 0.0059 26.1 7.3 39 217-256 77-115 (126)
62 2crn_A Ubash3A protein; compac 25.1 76 0.0026 25.7 4.2 37 215-252 6-43 (64)
63 2x7l_M HIV REV; nuclear export 24.9 13 0.00046 33.8 -0.4 16 389-404 36-51 (115)
64 2cp8_A NEXT to BRCA1 gene 1 pr 24.3 42 0.0014 26.8 2.4 25 660-684 22-46 (54)
65 1wj7_A Hypothetical protein (R 23.2 82 0.0028 28.3 4.4 35 219-253 40-74 (104)
66 1ify_A HHR23A, UV excision rep 23.0 70 0.0024 24.4 3.4 34 218-252 8-41 (49)
67 3n71_A Histone lysine methyltr 22.4 3.8E+02 0.013 29.2 10.5 124 444-573 315-446 (490)
68 3mkr_A Coatomer subunit epsilo 21.9 1.2E+02 0.004 29.9 5.7 22 443-464 4-25 (291)
69 3e46_A Ubiquitin-conjugating e 20.6 88 0.003 31.8 4.6 37 648-685 216-252 (253)
No 1
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=89.39 E-value=0.45 Score=40.15 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=36.0
Q ss_pred ccChhHHHHHHHHh-cCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 645 VCDENAILKVMEFL-ALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 645 ~~~~~~i~~~~e~~-~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
+-=++.|-.|.|++ .|+.+-...+|..||+|+|.||+.+|
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44578899999987 79999999999999999999999987
No 2
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.64 E-value=1.5 Score=37.99 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=38.3
Q ss_pred cccCCccccChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 638 QVSSADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 638 ~~~~~~~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
+.+++...-+|..|.++|+. -.+|..|+..|...+||+|.-+.-+|
T Consensus 20 ~~~~~~~~~~ee~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~ 65 (83)
T 1veg_A 20 ENNSRQASPSQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLA 65 (83)
T ss_dssp SCCSSSCCCCHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhccccCCCCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33343455579999999995 78999999999999999999988887
No 3
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=88.60 E-value=1.4 Score=37.27 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=35.9
Q ss_pred cccChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660 644 FVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 685 (685)
Q Consensus 644 ~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~ 685 (685)
..-.|..|.++|| |-.+|.+|+.-|...+||+|..+.-+|.
T Consensus 26 ~~~~ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 26 VAASEEQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp SCCCHHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CcccHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3456889999999 5799999999999999999999988873
No 4
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=86.94 E-value=0.69 Score=34.53 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660 647 DENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 685 (685)
Q Consensus 647 ~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~ 685 (685)
+|.+|.++|+ +-.||.+|+.-|...+||+|.-+.-+|.
T Consensus 4 ~e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 4 KSLAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 5788999999 6899999999999999999998887763
No 5
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.50 E-value=1.4 Score=33.58 Aligned_cols=42 Identities=12% Similarity=0.285 Sum_probs=36.5
Q ss_pred CccccChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660 642 ADFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 685 (685)
Q Consensus 642 ~~~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~ 685 (685)
+++..++..|..+|+ +-.||..|+.-|... ||+|.-+.-||.
T Consensus 4 ~~~~~~~~~v~~L~~-MGF~~~~a~~AL~~~-~n~e~A~~~L~~ 45 (47)
T 2ekk_A 4 GSSGVNQQQLQQLMD-MGFTREHAMEALLNT-STMEQATEYLLT 45 (47)
T ss_dssp CCCSSCHHHHHHHHH-HHCCHHHHHHHHHHS-CSHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHH-cCCCHHHHHHHHHHc-CCHHHHHHHHHc
Confidence 356779999999999 789999999999998 599998887763
No 6
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.47 E-value=1.5 Score=35.46 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=34.8
Q ss_pred cChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 646 CDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 646 ~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
.++..|.++|+ |-.||..|+.-|...+||+|..+.-||
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~ 45 (63)
T 2dak_A 8 PPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIF 45 (63)
T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57899999999 689999999999999999999988776
No 7
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=84.41 E-value=2.3 Score=34.70 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=35.0
Q ss_pred cChhHHHHHHHHhcCChhhHHHHHHHhcC-CHHHHHHHHhC
Q 005660 646 CDENAILKVMEFLALPRADAIHLLAQYNG-NAETVIQQIFA 685 (685)
Q Consensus 646 ~~~~~i~~~~e~~~l~r~~ai~ll~~~~g-~~e~v~~~~~~ 685 (685)
.+|..|.++|+ |-.||..|+.-|...+| |+|.-+.-||.
T Consensus 18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 57889999999 78999999999999998 99998888773
No 8
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=83.07 E-value=0.59 Score=40.98 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHcCChhhHhhhcCCCCCC
Q 005660 8 WEALDALILEFAKSENLIEDSIVSSPPSSPS 38 (685)
Q Consensus 8 k~~LnrLVldYLvreGY~EtAeaFa~ESgi~ 38 (685)
+++||+-|++||...||.+++.+|.+|.++.
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~ 40 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELD 40 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCC
Confidence 5799999999999999999999999999876
No 9
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=81.42 E-value=1.5 Score=35.07 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=26.9
Q ss_pred hhHHHHHHHHhcCChhhHHHHHHHhcCCHHH
Q 005660 648 ENAILKVMEFLALPRADAIHLLAQYNGNAET 678 (685)
Q Consensus 648 ~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~ 678 (685)
|..|-++|+ +-.+|.+||+.|++.+||+|.
T Consensus 10 e~~I~~L~~-lGF~r~~ai~AL~~a~nnve~ 39 (53)
T 2d9s_A 10 SSEIERLMS-QGYSYQDIQKALVIAHNNIEM 39 (53)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhcCCHHH
Confidence 456999998 578999999999999999986
No 10
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=81.04 E-value=2.1 Score=30.98 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=32.0
Q ss_pred hhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 648 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 648 ~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
+.+|.++|+. -.+|..|+.-|...+||+|.-+.-+|
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 5689999995 99999999999999999998887665
No 11
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=81.00 E-value=1.5 Score=34.89 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhcCChhhHHHHHHHhcCCHHH
Q 005660 648 ENAILKVMEFLALPRADAIHLLAQYNGNAET 678 (685)
Q Consensus 648 ~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~ 678 (685)
|..|-++|+ |-.+|.+||+.|++.+||+|.
T Consensus 12 ~~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~ 41 (52)
T 2ooa_A 12 DAKIAKLMG-EGYAFEEVKRALEIAQNNVEV 41 (52)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCCCHHH
Confidence 379999998 678999999999999999985
No 12
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=78.62 E-value=2.4 Score=37.92 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=35.7
Q ss_pred CCCChHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHHH
Q 005660 215 PPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 252 (685)
Q Consensus 215 p~fdE~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~~ 252 (685)
..+++.||.-++.-+..+|..|..+|+-.+||+..|+-
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~ 99 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIM 99 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHH
Confidence 46899999999999999999999999999999999974
No 13
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=78.43 E-value=7 Score=33.05 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=33.6
Q ss_pred ccccChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660 643 DFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 685 (685)
Q Consensus 643 ~~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~ 685 (685)
+..| +..|.++||.=--.|..+|+-|...+||+|..|.-+|.
T Consensus 26 e~~y-e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRY-QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp TTTS-HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred hHHH-HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3344 66788888864346888899999999999999988873
No 14
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=76.46 E-value=4 Score=33.27 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=34.4
Q ss_pred cChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 646 CDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 646 ~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
.++.+|..+|+ |-.+|.+|+.-|...+||+|.-+.-||
T Consensus 8 ~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~ 45 (63)
T 1wji_A 8 VDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNVLL 45 (63)
T ss_dssp SCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 58899999998 688999999999999999999888776
No 15
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=75.89 E-value=3.5 Score=37.13 Aligned_cols=38 Identities=13% Similarity=0.352 Sum_probs=35.5
Q ss_pred hhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660 648 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 685 (685)
Q Consensus 648 ~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~ 685 (685)
|..|.+|||.--.++.+|+.-|.+.|||.+..|..||.
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 56799999999999999999999999999999999883
No 16
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=73.85 E-value=3.3 Score=36.36 Aligned_cols=35 Identities=9% Similarity=0.176 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHHcCChhhHhhhcCCCCCCC
Q 005660 5 PVNWEALDALILEFAKSENLIEDSIVSSPPSSPSS 39 (685)
Q Consensus 5 ~Vnk~~LnrLVldYLvreGY~EtAeaFa~ESgi~~ 39 (685)
.++.+++|.||--||..-||..+|-+|.+|+++..
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 46789999999999999999999999999998863
No 17
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=73.73 E-value=6.6 Score=32.85 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=39.8
Q ss_pred hhcCCCCCCCccccCCCCCCChHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHHH
Q 005660 198 LEERDPPATPQESLYEAPPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 252 (685)
Q Consensus 198 l~erD~p~~~~e~dL~~p~fdE~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~~ 252 (685)
+++-|.|-+-..+....+..++..|+.++. ...+|.+|..+||.++||+..|..
T Consensus 9 ~~h~dDpd~d~pl~~~~~~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave 62 (73)
T 1wiv_A 9 LSHMDDPDIDAPISHQTSDIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATD 62 (73)
T ss_dssp SSCCSCSCSSCCSCCSSCSSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred HHcCCCCCccCCCCCCCCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHH
Confidence 344454444333333456788999988875 678999999999999999999864
No 18
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.50 E-value=6 Score=33.99 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=36.2
Q ss_pred cccChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 644 FVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 644 ~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
...++..|.++|+ |-.+|..|+.-|...+||+|.-+.-||
T Consensus 26 ~~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~ 65 (83)
T 2dai_A 26 ERVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLI 65 (83)
T ss_dssp SSCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4568999999999 799999999999999999999888776
No 19
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=71.84 E-value=8.9 Score=30.33 Aligned_cols=36 Identities=6% Similarity=0.229 Sum_probs=29.7
Q ss_pred hhHHHHHHHHhcCChh-hHHHHHHHhcCCHHHHHHHHh
Q 005660 648 ENAILKVMEFLALPRA-DAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 648 ~~~i~~~~e~~~l~r~-~ai~ll~~~~g~~e~v~~~~~ 684 (685)
+..|.+++|. -.++. .+|+.|...+||+|..|.-+|
T Consensus 10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~ 46 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLR 46 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6678888887 45554 469999999999999998887
No 20
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=71.57 E-value=5 Score=32.68 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=35.4
Q ss_pred cccChhHHHHHHHHhcCChhhHHHHHHHh-cCCHHHHHHHHh
Q 005660 644 FVCDENAILKVMEFLALPRADAIHLLAQY-NGNAETVIQQIF 684 (685)
Q Consensus 644 ~~~~~~~i~~~~e~~~l~r~~ai~ll~~~-~g~~e~v~~~~~ 684 (685)
...++..|.++|+ |-.||..|+.-|... |||+|.-+.-||
T Consensus 6 ~~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl 46 (64)
T 1whc_A 6 SGAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLM 46 (64)
T ss_dssp CCCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3568899999999 789999999999999 799999888776
No 21
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=68.97 E-value=6.7 Score=33.89 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=35.7
Q ss_pred cccChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660 644 FVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 685 (685)
Q Consensus 644 ~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~ 685 (685)
...++..|.++|+ |-.||..|+..|...+||+|.-+.-||.
T Consensus 18 ~~~n~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 18 AWIMSRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred cccCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456899999999 6899999999999999999999888773
No 22
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.93 E-value=4.3 Score=31.30 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=32.7
Q ss_pred ChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 647 DENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 647 ~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
++..|.++||. -.+|..|+.-|...+||+|..+.-+|
T Consensus 8 ~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~ 44 (49)
T 1ify_A 8 YETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLL 44 (49)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 57788888885 67999999999999999999888776
No 23
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=67.65 E-value=17 Score=31.17 Aligned_cols=41 Identities=7% Similarity=0.212 Sum_probs=36.1
Q ss_pred ccccChhHHHHHHHHhcCChhhHHHHHHHhc-CCHHHHHHHHh
Q 005660 643 DFVCDENAILKVMEFLALPRADAIHLLAQYN-GNAETVIQQIF 684 (685)
Q Consensus 643 ~~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~-g~~e~v~~~~~ 684 (685)
.+..++..|.++|+ |-.+|..|+..|...+ ||+|.-+.-+|
T Consensus 25 ~~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~ 66 (84)
T 1vek_A 25 QPVANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLL 66 (84)
T ss_dssp CCCCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46779999999999 7999999999999885 79999888776
No 24
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=67.26 E-value=13 Score=29.05 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660 648 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 685 (685)
Q Consensus 648 ~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~ 685 (685)
+..|.+++|.=--+|..+|..|...+||+|..+.-+|+
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 67889998853339999999999999999999988874
No 25
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.09 E-value=11 Score=31.66 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=35.6
Q ss_pred cccChhHHHHHHHHhcCChhhHHHHHHHhcC-CHHHHHHHHh
Q 005660 644 FVCDENAILKVMEFLALPRADAIHLLAQYNG-NAETVIQQIF 684 (685)
Q Consensus 644 ~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g-~~e~v~~~~~ 684 (685)
+..++..|.++|+ |-.+|..|+.-|...+| |+|.-+.-||
T Consensus 6 ~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~ 46 (74)
T 2dag_A 6 SGLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVM 46 (74)
T ss_dssp CSSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3568999999999 78999999999999998 7999888776
No 26
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.77 E-value=15 Score=30.15 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=35.6
Q ss_pred cccCh----hHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 644 FVCDE----NAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 644 ~~~~~----~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
+-+++ ..|...|++-....+.|++.|..+++|.|.-|..+|
T Consensus 10 ~~m~~~~~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff 54 (66)
T 2dzl_A 10 VNMDELRHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFF 54 (66)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHhhcCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45656 558888888889999999999999999999999887
No 27
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=60.82 E-value=12 Score=27.83 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 648 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 648 ~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
+..|...+++-..+.+.|+++|...++|.|.-|..+|
T Consensus 6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4568888888888999999999999999999998877
No 28
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=57.98 E-value=15 Score=30.74 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=34.0
Q ss_pred cChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 646 CDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 646 ~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
.++..|.++|+. -.+|..|+.-|...+||+|.-+.-||
T Consensus 28 ~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 28 IDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVF 65 (73)
T ss_dssp SCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 578899999884 78999999999999999999888776
No 29
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=54.58 E-value=18 Score=29.01 Aligned_cols=41 Identities=7% Similarity=0.156 Sum_probs=32.4
Q ss_pred ccccChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 643 DFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 643 ~~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
+..| +..|.+++|.=--.|..+|+-|...+||+|..|.-+|
T Consensus 14 e~~~-~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~ 54 (58)
T 1wr1_B 14 EERY-EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 54 (58)
T ss_dssp HHHT-HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3344 5678888886434577889999999999999998877
No 30
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.49 E-value=16 Score=29.36 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=33.1
Q ss_pred hhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 648 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 648 ~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
++.|...|++-....+.|++.|...++|.|.-|+-+|
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4578888888888899999999999999999998887
No 31
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=52.34 E-value=12 Score=29.17 Aligned_cols=36 Identities=11% Similarity=0.341 Sum_probs=31.1
Q ss_pred hhHHHHHHHHhcC-ChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 648 ENAILKVMEFLAL-PRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 648 ~~~i~~~~e~~~l-~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
+..|.+++|. -. +|..|+..|...+||+|..|.-+|
T Consensus 12 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~ 48 (53)
T 2knz_A 12 QQQLEQLNSM-GFINREANLQALIATGGDINAAIERLL 48 (53)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5678888875 45 999999999999999999998877
No 32
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=50.82 E-value=3.2 Score=42.84 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHcCChhhHhhhcCCCCCC
Q 005660 7 NWEALDALILEFAKSENLIEDSIVSSPPSSPS 38 (685)
Q Consensus 7 nk~~LnrLVldYLvreGY~EtAeaFa~ESgi~ 38 (685)
-+++++++|++||..+||.+++..|.+|.++.
T Consensus 7 q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~ 38 (410)
T 1vyh_C 7 QRDELNRAIADYLRSNGYEEAYSVFKKEAELD 38 (410)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhCCC
Confidence 46899999999999999999999999998775
No 33
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=49.12 E-value=17 Score=25.97 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=27.9
Q ss_pred hHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHHH
Q 005660 219 EVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 252 (685)
Q Consensus 219 E~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~~ 252 (685)
+..|+.++. ...+|.++..+|+.++||+..|+.
T Consensus 5 ~~~i~~L~~-mGf~~~~a~~AL~~~~~n~e~A~~ 37 (40)
T 1z96_A 5 NSKIAQLVS-MGFDPLEAAQALDAANGDLDVAAS 37 (40)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 456777776 488999999999999999999873
No 34
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=48.74 E-value=27 Score=31.52 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=36.6
Q ss_pred ccccChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660 643 DFVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 685 (685)
Q Consensus 643 ~~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~ 685 (685)
+...++..|..+|+ |-.+|..|+..|...+||+|.-+.-+|.
T Consensus 74 ~~~~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 74 DNQPPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp CCCCCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred ccCcCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34468999999999 6899999999999999999998887763
No 35
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.72 E-value=30 Score=26.05 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=31.0
Q ss_pred CCCCChHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHHH
Q 005660 214 APPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 252 (685)
Q Consensus 214 ~p~fdE~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~~ 252 (685)
.|.+++..|+.++. ...+|.++..+|+.+ ||+..|+.
T Consensus 5 ~~~~~~~~v~~L~~-MGF~~~~a~~AL~~~-~n~e~A~~ 41 (47)
T 2ekk_A 5 SSGVNQQQLQQLMD-MGFTREHAMEALLNT-STMEQATE 41 (47)
T ss_dssp CCSSCHHHHHHHHH-HHCCHHHHHHHHHHS-CSHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHHHHHHHHc-CCHHHHHH
Confidence 35678888888887 688999999999998 69998864
No 36
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.40 E-value=22 Score=28.54 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCCChHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHHH
Q 005660 215 PPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 252 (685)
Q Consensus 215 p~fdE~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~~ 252 (685)
+.+++..|+.++. .-.+|.++..+|+.+.|++..|+.
T Consensus 6 ~~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e 42 (63)
T 2dak_A 6 SGPPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD 42 (63)
T ss_dssp CCCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4567888888887 678999999999999999998864
No 37
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=47.09 E-value=21 Score=28.45 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=25.9
Q ss_pred HhHHHHHHHhhcchhHHHHHHHHhcCcHHHH
Q 005660 220 VDIQALAHAVKITRQGAVDSLRFARGDLFQA 250 (685)
Q Consensus 220 ~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a 250 (685)
..|.+|+. ..-+|++++.+|+.++||+..|
T Consensus 13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~A 42 (52)
T 2ooa_A 13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVA 42 (52)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHH
Confidence 56777775 7789999999999999999876
No 38
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=45.37 E-value=31 Score=26.29 Aligned_cols=38 Identities=8% Similarity=0.197 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660 648 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 685 (685)
Q Consensus 648 ~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~ 685 (685)
+..|..+++.=--.|..+|+-|...+||+|..|.-+|+
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 56777777743234677899999999999999988874
No 39
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.79 E-value=27 Score=28.35 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=30.9
Q ss_pred CCCChHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHH
Q 005660 215 PPFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAF 251 (685)
Q Consensus 215 p~fdE~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~ 251 (685)
..+++..|+.|+. ...+|.+|+.+|+.+.||+..|.
T Consensus 6 ~~~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~ 41 (63)
T 1wji_A 6 SGVDEKALKHITE-MGFSKEASRQALMDNGNNLEAAL 41 (63)
T ss_dssp CSSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHH
Confidence 3578888888875 67899999999999999999886
No 40
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.08 E-value=37 Score=28.34 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=32.6
Q ss_pred CCCCChHhHHHHHHHhhcchhHHHHHHHHhcC-cHHHHHH
Q 005660 214 APPFDEVDIQALAHAVKITRQGAVDSLRFARG-DLFQAFQ 252 (685)
Q Consensus 214 ~p~fdE~~i~~~~ha~~i~RQqa~d~Lr~~~G-dv~~a~~ 252 (685)
.+.++|..|+.|+. .-.+|.++..+|+.+.| ++..|+.
T Consensus 5 ~~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~e 43 (74)
T 2dag_A 5 SSGLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMN 43 (74)
T ss_dssp CCSSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHH
Confidence 45678889988887 68899999999999997 7998874
No 41
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=42.95 E-value=35 Score=31.84 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCHHHHHH-------------HHhccCCcc-cccCccchhhhhhhHHHHHHh
Q 005660 440 EIVLGMKELAGKGMAAEAVE-------------EINAMDADF-FVQNPMLLFQLKQVEFLKLVS 489 (685)
Q Consensus 440 e~r~~Ir~ai~~G~i~~Ai~-------------~vN~ldP~i-ld~np~L~F~Lqq~~liELIr 489 (685)
+.+.+|.+++++|++++|+. +...+||.. |-..|. .|.|.-|+-||.
T Consensus 2 ~~~~~I~~Ll~~g~~eeAf~~aL~ssd~~lv~~lc~~~dp~~~~~~~~~---~Lsq~vLLSLiq 62 (139)
T 2vxg_A 2 AMGDSIKQLLMAGQINKAFHQALLANDLGLVEFTLRHTDSNQAFAPEGC---RLEQKVLLSLIQ 62 (139)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHSCHHHHTC-------CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHhCcHHHHHHHHHcCCHHHhcCCCCC---CccHHHHHHHHH
Confidence 45778999999999999987 456778874 544433 567777777775
No 42
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=42.43 E-value=22 Score=26.19 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=28.0
Q ss_pred ChHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHHH
Q 005660 218 DEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 252 (685)
Q Consensus 218 dE~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~~ 252 (685)
+|..|+.++. ...+|.+++.+|+..+||+..|+.
T Consensus 4 ~e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~ 37 (43)
T 2g3q_A 4 KSLAVEELSG-MGFTEEEAHNALEKCNWDLEAATN 37 (43)
T ss_dssp HHHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHH
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHH
Confidence 3566777766 568999999999999999999863
No 43
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=42.22 E-value=31 Score=30.77 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=33.0
Q ss_pred cccChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHH
Q 005660 644 FVCDENAILKVMEFLALPRADAIHLLAQYNGNAETVI 680 (685)
Q Consensus 644 ~~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~ 680 (685)
.-.++.+|-+||+=.-.+|+.|++-|...+||.=+-|
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai 98 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGGDLAEAI 98 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHH
Confidence 4678999999999999999999999999999975443
No 44
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.12 E-value=36 Score=27.69 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=33.3
Q ss_pred ccChhHHHHHHHHhcCChhhHHHHHHHhcC-CHHHHHHHHh
Q 005660 645 VCDENAILKVMEFLALPRADAIHLLAQYNG-NAETVIQQIF 684 (685)
Q Consensus 645 ~~~~~~i~~~~e~~~l~r~~ai~ll~~~~g-~~e~v~~~~~ 684 (685)
..+|..|..+|+ +-.||..|+.-|..-++ |+|.-+.-||
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~ 46 (64)
T 2crn_A 7 GSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLH 46 (64)
T ss_dssp CCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 447889999999 89999999999998876 8998776665
No 45
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.45 E-value=32 Score=27.53 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=26.6
Q ss_pred hHhHHHHHHHhhcchhHHHHHHHHhcCcHHHH
Q 005660 219 EVDIQALAHAVKITRQGAVDSLRFARGDLFQA 250 (685)
Q Consensus 219 E~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a 250 (685)
|..|..|+. ..-+|++++.+|+.++||+..|
T Consensus 10 e~~I~~L~~-lGF~r~~ai~AL~~a~nnve~A 40 (53)
T 2d9s_A 10 SSEIERLMS-QGYSYQDIQKALVIAHNNIEMA 40 (53)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhcCCHHHH
Confidence 456887776 7789999999999999999877
No 46
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.99 E-value=44 Score=27.36 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=27.2
Q ss_pred HHHHHHHHhc-CChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 650 AILKVMEFLA-LPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 650 ~i~~~~e~~~-l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
.|...|++-. -..+.|+++|..+++|.|.-|+.+|
T Consensus 21 ~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 21 KLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444455444 4557899999999999999999887
No 47
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=39.40 E-value=9.9 Score=29.14 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660 647 DENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 685 (685)
Q Consensus 647 ~~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~ 685 (685)
++.+|-.+++. -.||..||+-|...+||+|.-..-+|+
T Consensus 4 e~eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 4 EKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp CHHHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 57788888764 789999999999999999988877773
No 48
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.93 E-value=40 Score=28.83 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=31.8
Q ss_pred CCChHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHHH
Q 005660 216 PFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 252 (685)
Q Consensus 216 ~fdE~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~~ 252 (685)
.+++..|+.++. ...+|.+|..+|+..+|++..|+.
T Consensus 27 ~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~e 62 (83)
T 2dai_A 27 RVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAME 62 (83)
T ss_dssp SCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHH
Confidence 468888888886 789999999999999999999875
No 49
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.17 E-value=47 Score=26.92 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=30.5
Q ss_pred CChHhHHHHHHHhhcchhHHHHHHHHhcC-cHHHHHH
Q 005660 217 FDEVDIQALAHAVKITRQGAVDSLRFARG-DLFQAFQ 252 (685)
Q Consensus 217 fdE~~i~~~~ha~~i~RQqa~d~Lr~~~G-dv~~a~~ 252 (685)
.+|..|+.|+. .-.+|.+|..+|+.+.| |+..|+.
T Consensus 18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~e 53 (64)
T 2cpw_A 18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTACD 53 (64)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 56778888877 78999999999999998 9999975
No 50
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.40 E-value=36 Score=27.58 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=30.8
Q ss_pred CCCChHhHHHHHHHhhcchhHHHHHHHHh-cCcHHHHHH
Q 005660 215 PPFDEVDIQALAHAVKITRQGAVDSLRFA-RGDLFQAFQ 252 (685)
Q Consensus 215 p~fdE~~i~~~~ha~~i~RQqa~d~Lr~~-~Gdv~~a~~ 252 (685)
..+++..|+.++. .-.+|.++..+|+.+ +|++..|+.
T Consensus 6 ~~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~e 43 (64)
T 1whc_A 6 SGAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAMD 43 (64)
T ss_dssp CCCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 3567778888886 788999999999999 699998864
No 51
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.30 E-value=34 Score=28.18 Aligned_cols=32 Identities=3% Similarity=0.109 Sum_probs=0.0
Q ss_pred ChHhHHHHHHHhhcchhHHHHHHHHhcCcHHHH
Q 005660 218 DEVDIQALAHAVKITRQGAVDSLRFARGDLFQA 250 (685)
Q Consensus 218 dE~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a 250 (685)
++..|..+. ....+++||..+||...||++.|
T Consensus 19 e~e~V~~Lv-sMGFs~~qA~kALKat~~NvErA 50 (63)
T 1wgn_A 19 ERQCVETVV-NMGYSYECVLRAMKKKGENIEQI 50 (63)
T ss_dssp HHHHHHHHH-HHHCCHHHHHHHHHHHCSCHHHH
T ss_pred hHHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHH
No 52
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.37 E-value=54 Score=28.03 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=33.0
Q ss_pred CCCCChHhHHHHHHHhhcchhHHHHHHHHhc-CcHHHHHH
Q 005660 214 APPFDEVDIQALAHAVKITRQGAVDSLRFAR-GDLFQAFQ 252 (685)
Q Consensus 214 ~p~fdE~~i~~~~ha~~i~RQqa~d~Lr~~~-Gdv~~a~~ 252 (685)
.+.+++..|+.|+. .-.+|.+|..+|+.++ |++..|+.
T Consensus 25 ~~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~e 63 (84)
T 1vek_A 25 QPVANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMN 63 (84)
T ss_dssp CCCCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 56778999998886 7899999999999997 79999874
No 53
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=32.40 E-value=2e+02 Score=30.66 Aligned_cols=125 Identities=11% Similarity=0.036 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcc---CCcccccCccchhhhhhhHHHHHHhcCChhhHHHHHHhhcCc----ccccCc
Q 005660 440 EIVLGMKELAGKGMAAEAVEEINAM---DADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGP----LAASHP 512 (685)
Q Consensus 440 e~r~~Ir~ai~~G~i~~Ai~~vN~l---dP~ild~np~L~F~Lqq~~liELIr~g~~~~AL~fA~~~L~p----~~~~~p 512 (685)
+....|.++-..|+.++|+++..+. .=.+|..+....-....--..-++..|+.++|+.+.+.-|.. +|+.||
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3445567777899999999876532 334444333333344444444566799999999999988876 588888
Q ss_pred cchhhHHHHHHHhcCCCCCcccCCCChHHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 005660 513 ALLKPLKETLLALLQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKILRATL 569 (685)
Q Consensus 513 ~~L~~Le~tmalLa~p~~~~~~~~l~~~~la~~ln~Ai~~~~~~~epkL~~LlKllL 569 (685)
.....+-. |+.+..-.+.. -....+-....+.+...+|..-|-...++..|-
T Consensus 369 ~~a~~l~n-La~~~~~~g~~----~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 369 VRGVQVMK-VGKLQLHQGMF----PQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420 (429)
T ss_dssp HHHHHHHH-HHHHHHHTTCH----HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHhcCCH----HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 87777766 66555443320 011222223333355555667787777766554
No 54
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=31.42 E-value=97 Score=24.78 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhc---cCCcccccCccchhhhhhhHHHHHHhcCChhhHHHHHHhhc
Q 005660 438 NYEIVLGMKELAGKGMAAEAVEEINA---MDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHL 504 (685)
Q Consensus 438 ~~e~r~~Ir~ai~~G~i~~Ai~~vN~---ldP~ild~np~L~F~Lqq~~liELIr~g~~~~AL~fA~~~L 504 (685)
.......-.-..+.|+.++|++..+. ++|+ ++..++.+=.+ ++..|+.++|+++...-+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~----~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK----DAKLYSNRAAC----YTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----CHHHHHHHHHH----HTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHH----HHHhccHHHHHHHHHHHH
Confidence 33444555667899999999997765 5554 34455544332 466899999988765543
No 55
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=30.07 E-value=9.1 Score=26.50 Aligned_cols=13 Identities=69% Similarity=1.365 Sum_probs=10.4
Q ss_pred cchhhhhhccccc
Q 005660 390 ERNKRKRWRERQD 402 (685)
Q Consensus 390 ~~~~~~r~~~r~~ 402 (685)
.+++|+|||.|+.
T Consensus 6 RRnRRRRWR~Rq~ 18 (26)
T 1etf_B 6 RRNRRRRWRERQR 18 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 3678999999854
No 56
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=29.28 E-value=71 Score=27.24 Aligned_cols=51 Identities=18% Similarity=0.032 Sum_probs=32.4
Q ss_pred HHHHHhcCCHHHHHHHHhc---cCCcccccCccchhhhhhhHHHHHHhcCChhhHHHHHHhh
Q 005660 445 MKELAGKGMAAEAVEEINA---MDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAH 503 (685)
Q Consensus 445 Ir~ai~~G~i~~Ai~~vN~---ldP~ild~np~L~F~Lqq~~liELIr~g~~~~AL~fA~~~ 503 (685)
-....+.|+.++|+..... ++|. |+..+|.|=.+ +.+.|+.++|++.-+.-
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~----~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHY----DARYFLGLGAC----RQSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHH----HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCc----cHHHHHHHHHH----HHHHhhHHHHHHHHHHH
Confidence 3456777888888876554 5663 55666655443 34677788777766553
No 57
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=29.07 E-value=20 Score=30.93 Aligned_cols=30 Identities=27% Similarity=0.210 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCChhhHhhhcCCCCCC
Q 005660 9 EALDALILEFAKSENLIEDSIVSSPPSSPS 38 (685)
Q Consensus 9 ~~LnrLVldYLvreGY~EtAeaFa~ESgi~ 38 (685)
..++.||.+||-..||.=|...|..|+|..
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 358999999999999999999999999986
No 58
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=27.89 E-value=49 Score=31.04 Aligned_cols=65 Identities=8% Similarity=0.086 Sum_probs=48.7
Q ss_pred CccceehhhhHHHHHHhcCCCccHHHHHHHHHHhcccccccCChhHHHHHHHHHhHhcccCCCCCCchHhhhc
Q 005660 88 HRLLFRLQKQKFIELLRRGTTEDRKSAINCLRTALAPCALDAYPEAYEEFKHVLLTFIYDKDDPTSPVAIEWA 160 (685)
Q Consensus 88 s~LeFkL~~QqFIELIR~g~e~~~~EALeyARt~LaP~ald~~pe~l~ELe~~MgLLAY~~dpe~SPya~LLs 160 (685)
..+.|=|-+.-|++||..|. ..+|-.|-.++-.-+. ..+.++++++.++.-- .+..+.+++..+-
T Consensus 50 ~~lLyPlFvh~yL~Lv~~g~---~~~A~~F~~~f~~~~~----~~~~~~i~~L~~i~~~-~~l~~n~~~~~fr 114 (156)
T 2nxp_A 50 SQLFYPLFVHMYLELVYNQH---ENEAKSFFEKFHGDQE----CYYQDDLRVLSSLTKK-EHMKGNETMLDFR 114 (156)
T ss_dssp GGGHHHHHHHHHHHHHHTTC---HHHHHHHHHHHGGGSC----GGGHHHHHHHHTCCSH-HHHTTCGGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHhHHhH----HHHHHHHHHHhcCCCH-HHHhhcHHHHHHH
Confidence 56899999999999999998 8999999886665443 6677788887765443 5555666666553
No 59
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=27.33 E-value=81 Score=27.63 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=25.8
Q ss_pred HHHHhcCCHHHHHHHHhc---cCCcccccCccchhhhhhhHHHHHHhcCChhhHHHHHHh
Q 005660 446 KELAGKGMAAEAVEEINA---MDADFFVQNPMLLFQLKQVEFLKLVSCGDHSGALRVACA 502 (685)
Q Consensus 446 r~ai~~G~i~~Ai~~vN~---ldP~ild~np~L~F~Lqq~~liELIr~g~~~~AL~fA~~ 502 (685)
....+.|+.++|+..... ++|. |+..+|.|=.+ +.+.|+.++|++.-+.
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~----~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDHY----DSRFFLGLGAC----RQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHH----HHHTTCHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcCcc----cHHHHHHHHHH----HHHHhhHHHHHHHHHH
Confidence 345566666666665543 4553 44445444332 2345666666655544
No 60
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.32 E-value=81 Score=27.15 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=30.7
Q ss_pred CCChHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHHH
Q 005660 216 PFDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 252 (685)
Q Consensus 216 ~fdE~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~~ 252 (685)
..+|..|+.|+. .-..|.+|+.+||.++||+..|..
T Consensus 27 ~~~ee~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e 62 (83)
T 1veg_A 27 SPSQESINQLVY-MGFDTVVAEAALRVFGGNVQLAAQ 62 (83)
T ss_dssp CCCHHHHHHHHH-HSCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 446888888876 568999999999999999999865
No 61
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=26.10 E-value=1.7e+02 Score=26.11 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=32.4
Q ss_pred CChHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHHHHhhh
Q 005660 217 FDEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQNELC 256 (685)
Q Consensus 217 fdE~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~~nel~ 256 (685)
.+|..|+.++. ...+|.++..+|+.++||+..|+.-=+.
T Consensus 77 ~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 77 PPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp CCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 57888888877 5788999999999999999999754333
No 62
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.10 E-value=76 Score=25.74 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=30.9
Q ss_pred CCCChHhHHHHHHHhhcchhHHHHHHHHhcC-cHHHHHH
Q 005660 215 PPFDEVDIQALAHAVKITRQGAVDSLRFARG-DLFQAFQ 252 (685)
Q Consensus 215 p~fdE~~i~~~~ha~~i~RQqa~d~Lr~~~G-dv~~a~~ 252 (685)
...+|..|+.|+. .-.+|..+..+|+.+.+ ++..|+.
T Consensus 6 ~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~ 43 (64)
T 2crn_A 6 SGSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEALA 43 (64)
T ss_dssp CCCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHH
Confidence 4557778888887 78999999999999987 8988863
No 63
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=24.87 E-value=13 Score=33.82 Aligned_cols=16 Identities=56% Similarity=1.159 Sum_probs=12.1
Q ss_pred CcchhhhhhcccccCC
Q 005660 389 GERNKRKRWRERQDDF 404 (685)
Q Consensus 389 ~~~~~~~r~~~r~~~~ 404 (685)
-.|++|+|||.|+.-.
T Consensus 36 aRRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 36 ARRNRRRRWRERQRQI 51 (115)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHH
Confidence 3578999999996543
No 64
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.29 E-value=42 Score=26.84 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=22.1
Q ss_pred CChhhHHHHHHHhcCCHHHHHHHHh
Q 005660 660 LPRADAIHLLAQYNGNAETVIQQIF 684 (685)
Q Consensus 660 l~r~~ai~ll~~~~g~~e~v~~~~~ 684 (685)
-.+..-|++|..+|||++.+|..+.
T Consensus 22 ~D~~~N~~aL~~~~gnv~~aI~~Ll 46 (54)
T 2cp8_A 22 CDRQLNLRLLKKHNYNILQVVTELL 46 (54)
T ss_dssp CCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3688899999999999999998764
No 65
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.24 E-value=82 Score=28.29 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=31.9
Q ss_pred hHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHHHH
Q 005660 219 EVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQN 253 (685)
Q Consensus 219 E~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~~n 253 (685)
|.+|+.|++..-.++.+|..+|.-.+||+..|+..
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~ 74 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINV 74 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 56899999998999999999999999999999754
No 66
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.00 E-value=70 Score=24.43 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=27.3
Q ss_pred ChHhHHHHHHHhhcchhHHHHHHHHhcCcHHHHHH
Q 005660 218 DEVDIQALAHAVKITRQGAVDSLRFARGDLFQAFQ 252 (685)
Q Consensus 218 dE~~i~~~~ha~~i~RQqa~d~Lr~~~Gdv~~a~~ 252 (685)
.+..|+.++. ...+|.+++.+||.++||+..|..
T Consensus 8 ~~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~e 41 (49)
T 1ify_A 8 YETMLTEIMS-MGYERERVVAALRASYNNPHRAVE 41 (49)
T ss_dssp HHHHHHHHHH-TTCCHHHHHHHHHTTTSCSHHHHH
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHH
Confidence 3556666665 567999999999999999999864
No 67
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=22.42 E-value=3.8e+02 Score=29.22 Aligned_cols=124 Identities=12% Similarity=-0.002 Sum_probs=73.9
Q ss_pred HHHHHHhcCCHHHHHHHHhc---cCCccc-ccCccchhhhhhhHHHHHHhcCChhhHHHHHHhhcCc----ccccCccch
Q 005660 444 GMKELAGKGMAAEAVEEINA---MDADFF-VQNPMLLFQLKQVEFLKLVSCGDHSGALRVACAHLGP----LAASHPALL 515 (685)
Q Consensus 444 ~Ir~ai~~G~i~~Ai~~vN~---ldP~il-d~np~L~F~Lqq~~liELIr~g~~~~AL~fA~~~L~p----~~~~~p~~L 515 (685)
.+..+-..|+.++|+.+..+ +.-.+| ++||.+.= ...-.-.=+...|+.++|+.+.+.-|.. +|++||+..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~-~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLR-LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34445578999999875432 222333 34444322 2222233345689999999999988877 588999888
Q ss_pred hhHHHHHHHhcCCCCCcccCCCChHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHhhh
Q 005660 516 KPLKETLLALLQPNEDVLVKGFPLHTLATSLQVAIGRRLGIEEPQLMKILRATLHTHN 573 (685)
Q Consensus 516 ~~Le~tmalLa~p~~~~~~~~l~~~~la~~ln~Ai~~~~~~~epkL~~LlKllLwaq~ 573 (685)
..+.. |+.+..-.+.. -....+-....+.....+|..-|-...++.+|--++.
T Consensus 394 ~~l~n-La~~~~~~G~~----~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 446 (490)
T 3n71_A 394 MAVMR-AGLTNWHAGHI----EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEM 446 (490)
T ss_dssp HHHHH-HHHHHHHTTCH----HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHCCCH----HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 88877 66655433220 0122233333334555567677888887776654443
No 68
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.89 E-value=1.2e+02 Score=29.92 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcc
Q 005660 443 LGMKELAGKGMAAEAVEEINAM 464 (685)
Q Consensus 443 ~~Ir~ai~~G~i~~Ai~~vN~l 464 (685)
..||++...|+.++||..++.+
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~ 25 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRV 25 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666666666666665543
No 69
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=20.64 E-value=88 Score=31.79 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=31.7
Q ss_pred hhHHHHHHHHhcCChhhHHHHHHHhcCCHHHHHHHHhC
Q 005660 648 ENAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA 685 (685)
Q Consensus 648 ~~~i~~~~e~~~l~r~~ai~ll~~~~g~~e~v~~~~~~ 685 (685)
++-|.++.| +-.+|++||..|..+|+|.|..++++|+
T Consensus 216 ~~~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCA-AGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 556666666 4889999999999999999999999983
Done!