Query 005661
Match_columns 685
No_of_seqs 658 out of 4021
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 11:49:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 5E-129 1E-133 1039.8 47.0 600 36-636 117-746 (752)
2 COG0465 HflB ATP-dependent Zn 100.0 5.1E-99 1E-103 843.1 41.2 438 188-626 144-592 (596)
3 KOG0731 AAA+-type ATPase conta 100.0 1.4E-93 3E-98 810.4 44.0 441 186-629 303-753 (774)
4 CHL00176 ftsH cell division pr 100.0 3.3E-86 7.1E-91 759.2 49.2 478 147-626 127-627 (638)
5 PRK10733 hflB ATP-dependent me 100.0 3.9E-85 8.5E-90 756.9 49.2 439 188-626 146-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 6.2E-81 1.3E-85 704.9 49.5 434 188-623 49-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 2.9E-64 6.3E-69 524.0 24.6 299 123-435 86-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.1E-54 2.3E-59 520.3 27.6 308 219-551 1622-1984(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 4.8E-51 1E-55 451.6 22.7 245 188-432 428-675 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 2.8E-51 6E-56 447.0 17.6 395 188-605 184-618 (802)
11 KOG0651 26S proteasome regulat 100.0 2.7E-51 5.9E-56 418.9 11.6 348 69-432 6-374 (388)
12 KOG0727 26S proteasome regulat 100.0 3.8E-49 8.2E-54 392.7 23.7 306 122-433 89-398 (408)
13 KOG0726 26S proteasome regulat 100.0 5.6E-50 1.2E-54 405.3 16.5 321 109-435 97-430 (440)
14 KOG0733 Nuclear AAA ATPase (VC 100.0 1.2E-48 2.6E-53 426.4 23.1 246 188-433 505-771 (802)
15 KOG0729 26S proteasome regulat 100.0 8.1E-49 1.7E-53 392.8 19.1 261 177-437 153-424 (435)
16 KOG0728 26S proteasome regulat 100.0 2.1E-47 4.5E-52 379.9 21.2 246 188-433 141-390 (404)
17 KOG0652 26S proteasome regulat 100.0 7.3E-46 1.6E-50 370.6 19.7 246 188-433 165-414 (424)
18 PTZ00454 26S protease regulato 100.0 1.9E-44 4.1E-49 395.2 25.8 306 122-434 79-389 (398)
19 PF01434 Peptidase_M41: Peptid 100.0 1.7E-44 3.6E-49 365.4 17.5 202 420-621 1-213 (213)
20 COG1223 Predicted ATPase (AAA+ 100.0 9.7E-44 2.1E-48 355.7 18.7 240 187-431 114-355 (368)
21 KOG0738 AAA+-type ATPase [Post 100.0 7.9E-43 1.7E-47 365.4 21.5 243 188-433 206-471 (491)
22 KOG0736 Peroxisome assembly fa 100.0 1.4E-42 3.1E-47 387.0 22.8 245 188-433 666-934 (953)
23 PTZ00361 26 proteosome regulat 100.0 2.2E-42 4.7E-47 381.5 23.1 307 122-434 117-427 (438)
24 PRK03992 proteasome-activating 100.0 9.2E-41 2E-45 366.7 25.8 250 188-437 125-378 (389)
25 COG0464 SpoVK ATPases of the A 100.0 1.5E-39 3.3E-44 368.0 24.3 246 187-432 235-484 (494)
26 KOG0735 AAA+-type ATPase [Post 100.0 3.7E-39 8.1E-44 356.7 21.4 228 187-414 660-888 (952)
27 KOG0737 AAA+-type ATPase [Post 100.0 3.5E-39 7.7E-44 338.4 19.9 225 188-414 86-314 (386)
28 TIGR01243 CDC48 AAA family ATP 100.0 8.1E-39 1.8E-43 377.4 24.9 245 189-433 448-712 (733)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 1.7E-38 3.7E-43 355.3 24.8 241 188-433 222-465 (489)
30 TIGR01242 26Sp45 26S proteasom 100.0 6.6E-38 1.4E-42 341.7 25.3 244 188-431 116-363 (364)
31 KOG0739 AAA+-type ATPase [Post 100.0 2.7E-39 5.9E-44 328.7 12.6 223 188-413 127-352 (439)
32 KOG0730 AAA+-type ATPase [Post 100.0 2E-38 4.4E-43 351.5 16.5 355 189-606 180-542 (693)
33 TIGR03689 pup_AAA proteasome A 100.0 2E-35 4.3E-40 330.5 24.2 250 188-437 176-484 (512)
34 TIGR01243 CDC48 AAA family ATP 100.0 1.3E-35 2.8E-40 350.3 22.9 246 188-433 172-437 (733)
35 KOG0741 AAA+-type ATPase [Post 100.0 1.9E-33 4.1E-38 303.3 15.2 248 187-434 212-493 (744)
36 KOG0732 AAA+-type ATPase conta 100.0 4.1E-33 8.9E-38 324.7 18.9 253 185-437 256-531 (1080)
37 PLN00020 ribulose bisphosphate 100.0 2.5E-32 5.4E-37 289.6 22.4 261 189-462 110-394 (413)
38 KOG0740 AAA+-type ATPase [Post 100.0 7E-32 1.5E-36 292.5 15.0 243 188-433 147-406 (428)
39 KOG0736 Peroxisome assembly fa 99.9 1.1E-25 2.3E-30 252.5 17.8 349 195-605 402-778 (953)
40 KOG0735 AAA+-type ATPase [Post 99.9 1.2E-22 2.6E-27 226.3 15.9 349 194-604 408-773 (952)
41 COG0464 SpoVK ATPases of the A 99.9 1.3E-21 2.8E-26 222.0 19.9 338 213-606 4-350 (494)
42 CHL00181 cbbX CbbX; Provisiona 99.9 2.7E-21 5.9E-26 204.4 20.1 223 193-424 22-271 (287)
43 KOG0742 AAA+-type ATPase [Post 99.9 5.4E-21 1.2E-25 202.1 19.7 228 189-427 350-608 (630)
44 PF00004 AAA: ATPase family as 99.9 1E-21 2.2E-26 181.4 12.3 130 230-360 1-132 (132)
45 TIGR02881 spore_V_K stage V sp 99.9 1.4E-20 3E-25 196.5 20.2 212 192-413 4-240 (261)
46 TIGR02880 cbbX_cfxQ probable R 99.9 1.2E-20 2.7E-25 199.3 19.7 211 194-413 22-255 (284)
47 KOG0743 AAA+-type ATPase [Post 99.9 5.1E-21 1.1E-25 206.8 15.3 205 189-403 196-412 (457)
48 KOG0744 AAA+-type ATPase [Post 99.8 2.9E-19 6.3E-24 184.9 14.7 229 193-429 141-412 (423)
49 PRK00080 ruvB Holliday junctio 99.8 7.3E-18 1.6E-22 181.7 20.7 214 189-431 20-250 (328)
50 PF05496 RuvB_N: Holliday junc 99.8 5.9E-18 1.3E-22 170.2 18.2 189 190-407 20-225 (233)
51 TIGR00635 ruvB Holliday juncti 99.8 9.4E-18 2E-22 178.5 20.4 210 192-430 2-228 (305)
52 TIGR02639 ClpA ATP-dependent C 99.8 1E-17 2.2E-22 198.2 19.2 220 191-432 179-430 (731)
53 TIGR00763 lon ATP-dependent pr 99.8 2.2E-17 4.8E-22 196.4 21.0 165 194-375 320-506 (775)
54 PRK11034 clpA ATP-dependent Cl 99.7 4.7E-17 1E-21 191.3 20.1 221 191-433 183-435 (758)
55 COG2255 RuvB Holliday junction 99.7 4.3E-16 9.4E-21 159.6 19.1 216 189-433 21-253 (332)
56 TIGR02902 spore_lonB ATP-depen 99.7 2.1E-16 4.6E-21 180.4 17.3 212 188-430 59-331 (531)
57 TIGR02928 orc1/cdc6 family rep 99.7 1.7E-15 3.7E-20 165.0 22.8 223 190-431 11-274 (365)
58 PRK12323 DNA polymerase III su 99.7 3.8E-16 8.3E-21 177.5 17.6 202 188-427 10-245 (700)
59 PRK14962 DNA polymerase III su 99.7 1.1E-15 2.4E-20 171.7 20.7 203 189-429 9-240 (472)
60 COG2256 MGS1 ATPase related to 99.7 5.5E-16 1.2E-20 165.6 16.4 203 190-433 20-240 (436)
61 PRK14956 DNA polymerase III su 99.7 1.2E-15 2.7E-20 169.6 19.8 203 188-428 12-243 (484)
62 PRK07003 DNA polymerase III su 99.7 9.9E-16 2.1E-20 176.1 19.1 202 188-427 10-240 (830)
63 TIGR03345 VI_ClpV1 type VI sec 99.7 1.5E-15 3.2E-20 181.6 20.8 217 190-428 183-428 (852)
64 PRK04195 replication factor C 99.7 2.1E-15 4.6E-20 170.7 19.8 207 188-428 8-222 (482)
65 PRK14961 DNA polymerase III su 99.7 5.1E-15 1.1E-19 161.9 20.5 209 189-429 11-242 (363)
66 PRK07994 DNA polymerase III su 99.6 4.9E-15 1.1E-19 170.7 20.0 202 189-428 11-241 (647)
67 PRK00411 cdc6 cell division co 99.6 1.4E-14 3.1E-19 159.5 22.9 224 190-431 26-282 (394)
68 PRK14960 DNA polymerase III su 99.6 4.8E-15 1E-19 169.0 19.4 202 189-428 10-240 (702)
69 PRK13342 recombination factor 99.6 1.2E-14 2.7E-19 161.5 22.1 200 190-432 8-220 (413)
70 PRK14958 DNA polymerase III su 99.6 5.5E-15 1.2E-19 167.6 18.2 203 188-428 10-241 (509)
71 PRK06645 DNA polymerase III su 99.6 9.7E-15 2.1E-19 164.9 20.1 212 188-428 15-253 (507)
72 PRK00149 dnaA chromosomal repl 99.6 1.8E-14 3.9E-19 161.9 20.8 220 188-432 116-350 (450)
73 PRK08691 DNA polymerase III su 99.6 1.1E-14 2.3E-19 167.5 19.2 210 188-429 10-242 (709)
74 TIGR00362 DnaA chromosomal rep 99.6 2.8E-14 6.2E-19 158.2 21.7 220 188-432 104-338 (405)
75 PRK10865 protein disaggregatio 99.6 4.2E-15 9E-20 178.2 16.0 167 190-378 174-358 (857)
76 PRK14949 DNA polymerase III su 99.6 1.5E-14 3.2E-19 169.3 20.0 208 189-428 11-241 (944)
77 PHA02544 44 clamp loader, smal 99.6 1.4E-14 3.1E-19 154.9 17.9 203 188-426 15-226 (316)
78 PRK12402 replication factor C 99.6 3.7E-14 7.9E-19 152.5 20.2 208 188-429 9-247 (337)
79 PRK14088 dnaA chromosomal repl 99.6 2.9E-14 6.2E-19 159.5 20.0 222 188-432 99-333 (440)
80 PTZ00112 origin recognition co 99.6 4.3E-14 9.4E-19 163.1 21.7 213 194-432 755-1007(1164)
81 TIGR03346 chaperone_ClpB ATP-d 99.6 1.4E-14 3.1E-19 174.0 18.2 202 191-414 170-399 (852)
82 CHL00095 clpC Clp protease ATP 99.6 1.9E-14 4.2E-19 172.4 19.2 201 191-413 176-403 (821)
83 PRK14964 DNA polymerase III su 99.6 2.1E-14 4.5E-19 161.2 18.2 202 189-428 8-238 (491)
84 PRK14963 DNA polymerase III su 99.6 2.6E-14 5.7E-19 161.9 19.0 202 188-428 8-237 (504)
85 PLN03025 replication factor C 99.6 3.6E-14 7.8E-19 152.5 19.0 200 188-427 7-219 (319)
86 PRK14951 DNA polymerase III su 99.6 3.7E-14 8.1E-19 163.1 19.6 203 188-428 10-246 (618)
87 PRK05563 DNA polymerase III su 99.6 4.5E-14 9.7E-19 162.1 20.2 202 189-428 11-241 (559)
88 PRK14959 DNA polymerase III su 99.6 3.6E-14 7.8E-19 162.4 19.1 203 188-428 10-241 (624)
89 TIGR02397 dnaX_nterm DNA polym 99.6 5.5E-14 1.2E-18 152.5 19.2 203 189-429 9-240 (355)
90 PRK14969 DNA polymerase III su 99.6 3.2E-14 7E-19 162.2 18.0 203 189-429 11-242 (527)
91 TIGR03420 DnaA_homol_Hda DnaA 99.6 5.9E-14 1.3E-18 142.5 18.1 205 189-428 10-225 (226)
92 PRK07764 DNA polymerase III su 99.6 5.4E-14 1.2E-18 166.7 19.3 204 188-428 9-243 (824)
93 PRK14957 DNA polymerase III su 99.6 8.1E-14 1.7E-18 158.5 19.7 203 189-429 11-242 (546)
94 PRK07940 DNA polymerase III su 99.6 3.6E-14 7.7E-19 156.2 16.0 184 192-402 3-213 (394)
95 PRK14952 DNA polymerase III su 99.6 7.7E-14 1.7E-18 159.9 19.2 202 189-427 8-240 (584)
96 TIGR02903 spore_lon_C ATP-depe 99.6 1.9E-13 4.2E-18 158.6 22.0 314 190-542 150-540 (615)
97 PRK05896 DNA polymerase III su 99.6 1.3E-13 2.7E-18 157.2 19.3 203 188-428 10-241 (605)
98 PRK14965 DNA polymerase III su 99.5 1.4E-13 3E-18 158.7 19.2 202 188-427 10-240 (576)
99 PRK06893 DNA replication initi 99.5 3.4E-13 7.4E-18 138.3 20.0 210 188-428 10-227 (229)
100 PRK08903 DnaA regulatory inact 99.5 2.3E-13 4.9E-18 139.0 18.5 202 188-429 12-224 (227)
101 PRK14970 DNA polymerase III su 99.5 2E-13 4.3E-18 149.4 19.2 210 188-429 11-231 (367)
102 PRK13341 recombination factor 99.5 2.1E-13 4.6E-18 160.0 20.6 208 189-431 23-247 (725)
103 PRK06305 DNA polymerase III su 99.5 2.5E-13 5.4E-18 152.3 20.1 202 189-428 12-243 (451)
104 PRK05342 clpX ATP-dependent pr 99.5 1.8E-13 3.9E-18 151.4 18.2 178 193-372 69-323 (412)
105 TIGR02640 gas_vesic_GvpN gas v 99.5 2.8E-13 6.1E-18 141.7 18.7 192 228-433 22-259 (262)
106 PRK10787 DNA-binding ATP-depen 99.5 1.3E-13 2.7E-18 163.5 17.3 217 194-428 322-579 (784)
107 PRK09111 DNA polymerase III su 99.5 3.3E-13 7.1E-18 155.5 19.9 209 188-428 18-254 (598)
108 PRK14955 DNA polymerase III su 99.5 2.4E-13 5.2E-18 150.4 18.0 213 188-428 10-254 (397)
109 COG1474 CDC6 Cdc6-related prot 99.5 1E-12 2.2E-17 143.4 22.3 216 195-431 18-265 (366)
110 PRK14953 DNA polymerase III su 99.5 3.8E-13 8.1E-18 152.0 19.2 208 189-428 11-241 (486)
111 TIGR00390 hslU ATP-dependent p 99.5 2.8E-13 6E-18 147.9 17.3 174 195-370 13-342 (441)
112 PRK07133 DNA polymerase III su 99.5 3.9E-13 8.4E-18 156.0 19.5 209 188-428 12-240 (725)
113 PRK14086 dnaA chromosomal repl 99.5 6.2E-13 1.3E-17 151.8 20.1 221 188-433 282-517 (617)
114 PRK12422 chromosomal replicati 99.5 8.5E-13 1.8E-17 147.7 20.8 226 188-433 105-345 (445)
115 PRK06647 DNA polymerase III su 99.5 4.9E-13 1.1E-17 153.3 18.9 208 189-428 11-241 (563)
116 PRK08084 DNA replication initi 99.5 1.2E-12 2.6E-17 134.9 19.9 206 188-428 16-233 (235)
117 KOG2004 Mitochondrial ATP-depe 99.5 1.8E-13 4E-18 154.0 14.7 167 194-376 411-598 (906)
118 COG0466 Lon ATP-dependent Lon 99.5 2E-13 4.3E-18 154.6 14.7 164 194-374 323-508 (782)
119 KOG2028 ATPase related to the 99.5 2.9E-13 6.3E-18 142.4 14.5 202 191-430 135-367 (554)
120 KOG0989 Replication factor C, 99.5 4.7E-13 1E-17 138.9 15.7 184 188-406 30-230 (346)
121 PRK08451 DNA polymerase III su 99.5 7.2E-13 1.6E-17 150.1 18.7 202 188-427 8-238 (535)
122 PRK13407 bchI magnesium chelat 99.5 2.1E-13 4.5E-18 146.9 13.0 218 190-433 4-308 (334)
123 PRK00440 rfc replication facto 99.5 8.6E-13 1.9E-17 140.7 17.7 203 187-429 10-224 (319)
124 PRK08727 hypothetical protein; 99.5 2.3E-12 5.1E-17 132.5 20.1 206 188-429 13-229 (233)
125 PRK05201 hslU ATP-dependent pr 99.5 2E-13 4.4E-18 149.0 12.6 176 194-371 15-345 (443)
126 PRK14087 dnaA chromosomal repl 99.5 2.3E-12 5.1E-17 144.5 21.1 190 228-431 142-348 (450)
127 PRK14950 DNA polymerase III su 99.5 1.7E-12 3.6E-17 150.3 19.5 210 188-429 10-243 (585)
128 PRK14948 DNA polymerase III su 99.5 1.9E-12 4.2E-17 150.0 19.8 205 189-426 11-240 (620)
129 PRK14954 DNA polymerase III su 99.5 2E-12 4.2E-17 149.4 19.7 214 188-429 10-255 (620)
130 TIGR00382 clpX endopeptidase C 99.5 1.5E-12 3.2E-17 143.6 17.5 177 195-373 78-330 (413)
131 CHL00081 chlI Mg-protoporyphyr 99.5 8.1E-13 1.7E-17 142.8 15.0 220 189-434 12-325 (350)
132 PRK11034 clpA ATP-dependent Cl 99.4 7.7E-13 1.7E-17 155.9 14.7 166 195-377 459-669 (758)
133 COG2812 DnaX DNA polymerase II 99.4 2.1E-12 4.5E-17 145.0 15.7 208 188-427 10-240 (515)
134 PF05673 DUF815: Protein of un 99.4 4.6E-12 9.9E-17 129.4 16.8 164 189-379 22-212 (249)
135 PRK05642 DNA replication initi 99.4 8.6E-12 1.9E-16 128.4 18.9 211 188-428 13-232 (234)
136 TIGR02639 ClpA ATP-dependent C 99.4 4.1E-12 8.9E-17 150.7 18.1 163 194-376 454-664 (731)
137 PRK14971 DNA polymerase III su 99.4 8E-12 1.7E-16 144.9 19.6 202 189-428 12-243 (614)
138 PF00308 Bac_DnaA: Bacterial d 99.4 4.2E-12 9.1E-17 129.5 14.7 200 188-411 2-216 (219)
139 cd00009 AAA The AAA+ (ATPases 99.4 6.9E-12 1.5E-16 115.8 14.4 120 227-359 19-150 (151)
140 TIGR02030 BchI-ChlI magnesium 99.4 4.3E-12 9.3E-17 137.0 14.8 218 192-434 2-312 (337)
141 COG1224 TIP49 DNA helicase TIP 99.4 1.9E-11 4.2E-16 128.9 18.8 99 330-431 321-432 (450)
142 PRK06620 hypothetical protein; 99.4 1.9E-11 4.2E-16 124.2 17.2 195 188-428 10-213 (214)
143 TIGR02442 Cob-chelat-sub cobal 99.4 4.7E-12 1E-16 147.8 14.5 215 192-434 2-307 (633)
144 TIGR01650 PD_CobS cobaltochela 99.4 2.1E-12 4.5E-17 137.8 10.6 138 227-375 64-234 (327)
145 COG2204 AtoC Response regulato 99.4 8.4E-12 1.8E-16 138.3 14.7 212 190-426 137-386 (464)
146 PRK15424 propionate catabolism 99.3 5.8E-12 1.3E-16 143.5 13.1 209 190-425 215-479 (538)
147 COG3829 RocR Transcriptional r 99.3 3.6E-12 7.9E-17 141.3 10.7 212 188-428 239-495 (560)
148 COG0593 DnaA ATPase involved i 99.3 5.9E-11 1.3E-15 129.9 18.9 228 187-436 80-318 (408)
149 COG3604 FhlA Transcriptional r 99.3 9E-12 2E-16 136.6 12.4 200 188-411 217-456 (550)
150 PRK11608 pspF phage shock prot 99.3 1.5E-11 3.3E-16 132.7 13.5 204 192-423 4-249 (326)
151 TIGR02974 phageshock_pspF psp 99.3 2.6E-11 5.7E-16 131.0 14.9 198 196-423 1-242 (329)
152 TIGR02329 propionate_PrpR prop 99.3 1.8E-11 3.8E-16 139.5 13.6 215 190-426 208-465 (526)
153 TIGR00368 Mg chelatase-related 99.3 3.6E-11 7.8E-16 136.1 15.9 212 191-429 189-497 (499)
154 TIGR01817 nifA Nif-specific re 99.3 1.4E-11 2.9E-16 141.6 12.2 208 189-426 191-440 (534)
155 PRK09112 DNA polymerase III su 99.3 7.3E-11 1.6E-15 128.4 17.2 188 189-405 18-242 (351)
156 TIGR03345 VI_ClpV1 type VI sec 99.3 6.1E-11 1.3E-15 142.3 17.7 164 194-377 566-783 (852)
157 COG0542 clpA ATP-binding subun 99.3 1.5E-10 3.2E-15 134.8 19.7 203 190-414 166-396 (786)
158 PRK07471 DNA polymerase III su 99.3 1E-10 2.2E-15 127.8 17.4 186 188-404 13-239 (365)
159 PRK10865 protein disaggregatio 99.3 1.2E-10 2.6E-15 140.0 19.0 168 193-377 567-782 (857)
160 PF01078 Mg_chelatase: Magnesi 99.3 8.7E-12 1.9E-16 124.8 7.2 119 192-338 1-158 (206)
161 PHA02244 ATPase-like protein 99.3 1.5E-10 3.4E-15 124.9 17.2 131 228-371 120-270 (383)
162 PRK09087 hypothetical protein; 99.2 1.1E-10 2.3E-15 119.7 15.0 171 229-431 46-222 (226)
163 PRK10820 DNA-binding transcrip 99.2 5.1E-11 1.1E-15 136.3 13.9 208 189-424 199-447 (520)
164 TIGR00764 lon_rel lon-related 99.2 1.5E-10 3.2E-15 134.3 17.2 101 329-431 268-391 (608)
165 PRK13531 regulatory ATPase Rav 99.2 1.9E-10 4.2E-15 128.1 17.3 213 194-434 20-286 (498)
166 PRK11388 DNA-binding transcrip 99.2 9.5E-11 2.1E-15 137.4 15.7 209 190-428 321-568 (638)
167 TIGR03346 chaperone_ClpB ATP-d 99.2 1.3E-10 2.9E-15 140.0 17.2 199 194-408 565-822 (852)
168 smart00350 MCM minichromosome 99.2 1.2E-10 2.6E-15 132.9 15.8 220 194-431 203-504 (509)
169 PRK05022 anaerobic nitric oxid 99.2 7.3E-11 1.6E-15 134.8 14.0 194 192-412 185-421 (509)
170 PRK05564 DNA polymerase III su 99.2 1.7E-10 3.6E-15 123.9 15.3 153 192-375 2-166 (313)
171 CHL00095 clpC Clp protease ATP 99.2 2.9E-10 6.3E-15 136.6 18.8 167 194-377 509-735 (821)
172 COG0714 MoxR-like ATPases [Gen 99.2 1.3E-10 2.8E-15 125.6 14.0 133 229-374 45-203 (329)
173 KOG1969 DNA replication checkp 99.2 4.2E-10 9.1E-15 127.7 18.0 212 188-415 265-519 (877)
174 smart00382 AAA ATPases associa 99.2 5E-11 1.1E-15 108.8 8.9 126 227-361 2-147 (148)
175 COG1219 ClpX ATP-dependent pro 99.2 5.6E-11 1.2E-15 123.8 9.0 125 195-324 62-203 (408)
176 TIGR03015 pepcterm_ATPase puta 99.2 1.7E-09 3.7E-14 112.8 20.1 189 229-431 45-266 (269)
177 COG1221 PspF Transcriptional r 99.2 5.1E-11 1.1E-15 130.1 8.9 196 189-412 73-310 (403)
178 COG0606 Predicted ATPase with 99.2 4E-11 8.7E-16 131.6 7.9 210 190-429 175-483 (490)
179 PRK15429 formate hydrogenlyase 99.2 3.1E-10 6.7E-15 134.1 15.0 197 190-411 372-609 (686)
180 COG0542 clpA ATP-binding subun 99.1 2.3E-10 5.1E-15 133.1 13.1 164 194-377 491-708 (786)
181 PRK09862 putative ATP-dependen 99.1 7.5E-10 1.6E-14 125.1 16.7 209 191-429 188-490 (506)
182 TIGR02031 BchD-ChlD magnesium 99.1 6.3E-10 1.4E-14 128.9 16.4 190 229-433 18-260 (589)
183 TIGR00678 holB DNA polymerase 99.1 4.9E-10 1.1E-14 111.2 13.4 129 224-373 11-167 (188)
184 PTZ00111 DNA replication licen 99.1 2.1E-09 4.5E-14 127.0 20.3 354 228-626 493-896 (915)
185 PRK07399 DNA polymerase III su 99.1 6E-10 1.3E-14 119.6 14.5 183 192-405 2-223 (314)
186 PRK11331 5-methylcytosine-spec 99.1 5.1E-10 1.1E-14 123.8 13.8 141 193-360 174-357 (459)
187 COG0470 HolB ATPase involved i 99.1 1.1E-09 2.3E-14 117.0 15.9 177 194-412 1-205 (325)
188 TIGR00602 rad24 checkpoint pro 99.1 1.3E-09 2.8E-14 126.1 17.2 252 188-462 78-389 (637)
189 PF07728 AAA_5: AAA domain (dy 99.1 1.8E-10 3.9E-15 108.4 8.1 113 229-352 1-139 (139)
190 COG1220 HslU ATP-dependent pro 99.1 4.9E-10 1.1E-14 117.7 11.1 133 288-432 252-404 (444)
191 COG2607 Predicted ATPase (AAA+ 99.1 6.1E-09 1.3E-13 105.3 17.5 165 189-380 55-245 (287)
192 PF05621 TniB: Bacterial TniB 99.1 8.3E-09 1.8E-13 108.7 19.4 218 194-427 34-285 (302)
193 TIGR02915 PEP_resp_reg putativ 99.0 8.2E-10 1.8E-14 123.8 11.6 205 192-424 137-382 (445)
194 KOG1942 DNA helicase, TBP-inte 99.0 7.2E-09 1.6E-13 107.0 17.2 129 286-431 296-438 (456)
195 PF06068 TIP49: TIP49 C-termin 99.0 3.6E-09 7.8E-14 113.6 15.2 78 175-263 9-88 (398)
196 PF00158 Sigma54_activat: Sigm 99.0 9.1E-10 2E-14 107.9 9.4 134 196-354 1-156 (168)
197 PRK08058 DNA polymerase III su 99.0 2.1E-09 4.6E-14 116.2 12.2 149 192-372 3-180 (329)
198 PRK10923 glnG nitrogen regulat 99.0 2.3E-09 5E-14 121.0 12.9 203 192-427 136-384 (469)
199 PF07724 AAA_2: AAA domain (Cd 99.0 1.3E-09 2.8E-14 107.1 9.2 111 229-341 5-132 (171)
200 KOG0741 AAA+-type ATPase [Post 99.0 5.9E-09 1.3E-13 114.7 15.1 161 202-371 519-683 (744)
201 PRK04132 replication factor C 99.0 5.6E-09 1.2E-13 123.9 16.1 170 230-427 567-750 (846)
202 PRK11361 acetoacetate metaboli 99.0 4.1E-09 8.8E-14 118.5 14.3 206 192-427 141-389 (457)
203 PRK05707 DNA polymerase III su 99.0 4.4E-09 9.5E-14 113.6 13.9 132 224-374 19-178 (328)
204 PRK08116 hypothetical protein; 99.0 3.6E-09 7.7E-14 111.3 11.3 123 227-363 114-251 (268)
205 KOG0991 Replication factor C, 98.9 7E-09 1.5E-13 104.3 12.4 205 188-429 21-235 (333)
206 COG1239 ChlI Mg-chelatase subu 98.9 9.2E-09 2E-13 111.8 13.9 216 189-433 12-324 (423)
207 KOG1514 Origin recognition com 98.9 2.7E-08 5.8E-13 113.2 17.1 195 229-433 424-657 (767)
208 smart00763 AAA_PrkA PrkA AAA d 98.9 1.2E-08 2.6E-13 110.3 13.3 80 193-279 49-141 (361)
209 PRK15115 response regulator Gl 98.9 1.2E-08 2.7E-13 114.2 13.9 200 195-427 135-380 (444)
210 PRK12377 putative replication 98.9 2E-08 4.3E-13 104.4 12.9 100 228-339 102-206 (248)
211 TIGR01818 ntrC nitrogen regula 98.9 1.5E-08 3.2E-13 114.1 12.8 206 193-428 133-381 (463)
212 KOG0745 Putative ATP-dependent 98.9 8.5E-09 1.8E-13 111.4 9.8 95 229-323 228-331 (564)
213 PF13177 DNA_pol3_delta2: DNA 98.9 2E-08 4.3E-13 97.8 11.6 133 198-360 1-160 (162)
214 PRK06964 DNA polymerase III su 98.8 1.6E-08 3.4E-13 109.6 11.6 135 223-373 17-203 (342)
215 PRK07952 DNA replication prote 98.8 3.6E-08 7.9E-13 102.1 12.5 132 189-339 67-205 (244)
216 KOG2227 Pre-initiation complex 98.8 1.9E-07 4.2E-12 102.2 17.6 220 194-432 150-416 (529)
217 PRK13765 ATP-dependent proteas 98.8 4.8E-08 1E-12 113.6 13.2 100 329-430 277-399 (637)
218 PRK10365 transcriptional regul 98.8 2.8E-08 6E-13 111.1 10.9 200 195-427 140-385 (441)
219 PF14532 Sigma54_activ_2: Sigm 98.7 1E-08 2.2E-13 96.8 5.6 106 197-338 1-109 (138)
220 PF07726 AAA_3: ATPase family 98.7 2.7E-09 5.8E-14 99.1 1.5 109 229-352 1-129 (131)
221 KOG2680 DNA helicase TIP49, TB 98.7 4.3E-07 9.2E-12 94.4 17.3 99 331-432 319-430 (454)
222 PRK06871 DNA polymerase III su 98.7 1.2E-07 2.6E-12 102.1 14.0 131 223-373 20-178 (325)
223 PRK08769 DNA polymerase III su 98.7 1.3E-07 2.8E-12 101.7 14.1 134 223-372 22-183 (319)
224 PRK08181 transposase; Validate 98.7 9.1E-08 2E-12 100.6 12.2 100 227-339 106-209 (269)
225 PRK07993 DNA polymerase III su 98.7 2.4E-07 5.3E-12 100.4 15.6 131 223-372 20-178 (334)
226 PRK08939 primosomal protein Dn 98.7 6.3E-08 1.4E-12 103.7 10.3 102 226-339 155-261 (306)
227 PRK13406 bchD magnesium chelat 98.7 8.3E-08 1.8E-12 110.7 11.3 189 228-433 26-252 (584)
228 PF12775 AAA_7: P-loop contain 98.7 1.2E-07 2.6E-12 99.9 10.9 167 189-377 5-196 (272)
229 PRK06090 DNA polymerase III su 98.6 3.4E-07 7.4E-12 98.4 14.2 131 223-372 21-178 (319)
230 PRK06526 transposase; Provisio 98.6 9E-08 2E-12 99.9 9.5 101 226-339 97-201 (254)
231 COG3283 TyrR Transcriptional r 98.6 1.2E-07 2.7E-12 100.5 10.4 210 189-425 199-443 (511)
232 KOG0990 Replication factor C, 98.6 2.9E-07 6.3E-12 96.8 12.6 188 188-411 35-237 (360)
233 COG1241 MCM2 Predicted ATPase 98.6 8.3E-07 1.8E-11 103.0 16.5 313 228-626 320-666 (682)
234 COG3284 AcoR Transcriptional a 98.6 1.1E-07 2.5E-12 107.6 8.3 183 229-428 338-554 (606)
235 PRK06835 DNA replication prote 98.6 3.5E-07 7.6E-12 98.9 11.7 100 228-339 184-289 (329)
236 PRK08699 DNA polymerase III su 98.5 4.4E-07 9.6E-12 98.0 11.7 133 224-372 18-183 (325)
237 PF01637 Arch_ATPase: Archaeal 98.5 6.2E-07 1.3E-11 90.3 11.9 159 227-394 20-226 (234)
238 PF03215 Rad17: Rad17 cell cyc 98.5 1.5E-06 3.3E-11 99.1 15.8 205 188-412 13-269 (519)
239 PF13173 AAA_14: AAA domain 98.5 6.2E-07 1.3E-11 83.5 10.5 120 228-365 3-126 (128)
240 COG1484 DnaC DNA replication p 98.5 6.7E-07 1.5E-11 93.4 11.6 71 226-298 104-179 (254)
241 PF01695 IstB_IS21: IstB-like 98.5 1.6E-07 3.5E-12 92.9 6.4 101 226-339 46-150 (178)
242 PRK06921 hypothetical protein; 98.5 1.5E-06 3.4E-11 91.3 13.8 104 227-339 117-225 (266)
243 PRK09183 transposase/IS protei 98.5 4.1E-07 8.8E-12 95.3 9.3 101 227-339 102-206 (259)
244 KOG0478 DNA replication licens 98.5 6.3E-05 1.4E-09 85.9 25.8 136 228-376 463-628 (804)
245 KOG1051 Chaperone HSP104 and r 98.4 1.1E-06 2.4E-11 104.3 12.2 128 194-339 562-711 (898)
246 PF00493 MCM: MCM2/3/5 family 98.4 2.5E-07 5.4E-12 100.3 6.1 219 195-431 25-326 (331)
247 TIGR02237 recomb_radB DNA repa 98.4 2.1E-06 4.6E-11 86.4 11.4 115 223-337 6-148 (209)
248 KOG2035 Replication factor C, 98.3 8E-06 1.7E-10 84.5 14.2 182 189-402 8-224 (351)
249 PF05729 NACHT: NACHT domain 98.3 5.9E-06 1.3E-10 78.8 11.8 140 229-376 2-165 (166)
250 PF03969 AFG1_ATPase: AFG1-lik 98.3 3.6E-06 7.8E-11 92.2 11.3 141 224-388 59-207 (362)
251 PF13401 AAA_22: AAA domain; P 98.3 2.8E-06 6.1E-11 78.4 8.5 72 228-299 5-100 (131)
252 cd01120 RecA-like_NTPases RecA 98.3 5.7E-06 1.2E-10 78.3 10.7 108 230-341 2-139 (165)
253 KOG1970 Checkpoint RAD17-RFC c 98.3 2.7E-05 5.8E-10 87.1 16.7 171 229-412 112-321 (634)
254 KOG0482 DNA replication licens 98.2 4.1E-06 8.8E-11 92.4 9.4 232 195-433 343-640 (721)
255 KOG0480 DNA replication licens 98.2 3.1E-06 6.8E-11 95.6 8.6 221 193-431 344-643 (764)
256 PF12774 AAA_6: Hydrolytic ATP 98.2 1.9E-05 4.2E-10 81.3 12.5 126 227-370 32-176 (231)
257 PRK05917 DNA polymerase III su 98.1 1.7E-05 3.6E-10 84.2 11.7 123 223-361 15-154 (290)
258 COG3267 ExeA Type II secretory 98.1 7.9E-05 1.7E-09 76.7 15.6 183 230-425 54-267 (269)
259 COG1485 Predicted ATPase [Gene 98.1 1.8E-05 3.9E-10 84.8 10.6 169 193-386 24-208 (367)
260 cd01124 KaiC KaiC is a circadi 98.1 3.9E-05 8.4E-10 75.3 12.4 103 230-340 2-141 (187)
261 PRK07276 DNA polymerase III su 98.1 7.3E-05 1.6E-09 79.4 14.9 130 223-371 20-172 (290)
262 KOG2383 Predicted ATPase [Gene 98.0 5.9E-05 1.3E-09 81.7 13.6 158 224-408 111-297 (467)
263 PLN03210 Resistant to P. syrin 98.0 2.3E-05 5E-10 98.2 12.0 157 190-376 180-366 (1153)
264 PF00931 NB-ARC: NB-ARC domain 98.0 6.1E-05 1.3E-09 79.1 13.2 171 205-403 4-202 (287)
265 KOG1051 Chaperone HSP104 and r 97.9 0.00011 2.4E-09 87.6 15.0 199 193-413 185-412 (898)
266 PRK09361 radB DNA repair and r 97.9 6.5E-05 1.4E-09 76.6 11.2 113 224-337 20-160 (225)
267 TIGR02688 conserved hypothetic 97.9 0.00021 4.5E-09 79.1 15.4 61 227-299 209-273 (449)
268 PRK07132 DNA polymerase III su 97.9 0.00014 3E-09 77.9 12.9 126 224-372 15-160 (299)
269 PRK05818 DNA polymerase III su 97.9 8.3E-05 1.8E-09 77.5 10.6 121 225-361 5-147 (261)
270 KOG0477 DNA replication licens 97.9 5.8E-05 1.3E-09 85.3 9.9 194 229-432 484-758 (854)
271 PF00910 RNA_helicase: RNA hel 97.9 1.4E-05 3E-10 72.3 4.2 23 230-252 1-23 (107)
272 TIGR01618 phage_P_loop phage n 97.8 6.7E-05 1.5E-09 76.7 9.0 73 226-300 11-95 (220)
273 PRK11823 DNA repair protein Ra 97.8 9.6E-05 2.1E-09 83.4 10.6 77 225-301 78-171 (446)
274 cd01121 Sms Sms (bacterial rad 97.8 0.0001 2.2E-09 81.2 10.4 77 225-301 80-173 (372)
275 PHA00729 NTP-binding motif con 97.8 5.3E-05 1.2E-09 77.5 7.1 24 229-252 19-42 (226)
276 KOG0481 DNA replication licens 97.7 0.00022 4.8E-09 79.2 11.7 125 229-360 366-513 (729)
277 PRK08533 flagellar accessory p 97.7 0.00027 5.9E-09 72.8 11.6 73 227-299 24-130 (230)
278 cd01394 radB RadB. The archaea 97.7 0.00027 5.8E-09 71.6 11.4 111 228-339 20-158 (218)
279 COG1116 TauB ABC-type nitrate/ 97.7 4.2E-05 9.2E-10 78.7 5.3 28 224-251 24-53 (248)
280 TIGR02012 tigrfam_recA protein 97.7 0.00019 4E-09 77.4 10.1 109 229-337 57-190 (321)
281 KOG2228 Origin recognition com 97.6 0.00037 8.1E-09 74.2 11.5 161 194-374 24-219 (408)
282 cd00983 recA RecA is a bacter 97.6 0.00028 6.1E-09 76.1 10.7 114 224-337 50-190 (325)
283 KOG1968 Replication factor C, 97.6 5E-05 1.1E-09 91.0 5.4 162 230-410 360-535 (871)
284 PF13191 AAA_16: AAA ATPase do 97.6 0.00014 2.9E-09 71.0 7.5 59 196-263 2-63 (185)
285 PRK06067 flagellar accessory p 97.6 0.00052 1.1E-08 70.5 12.0 40 223-262 21-63 (234)
286 TIGR02858 spore_III_AA stage I 97.6 0.00011 2.3E-09 77.6 6.9 95 228-340 112-230 (270)
287 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.0003 6.4E-09 72.0 9.7 114 224-337 16-168 (235)
288 PF13207 AAA_17: AAA domain; P 97.6 5.3E-05 1.1E-09 69.1 3.8 30 230-259 2-31 (121)
289 KOG2170 ATPase of the AAA+ sup 97.6 0.003 6.4E-08 66.7 17.0 127 195-339 83-225 (344)
290 cd03283 ABC_MutS-like MutS-lik 97.6 0.0004 8.6E-09 70.0 10.3 105 228-342 26-151 (199)
291 cd01393 recA_like RecA is a b 97.6 0.00038 8.2E-09 70.8 10.3 115 223-337 15-167 (226)
292 PRK08118 topology modulation p 97.6 0.00013 2.8E-09 71.4 6.3 33 229-261 3-35 (167)
293 COG5271 MDN1 AAA ATPase contai 97.6 0.00015 3.2E-09 88.6 7.7 138 227-376 1543-1705(4600)
294 COG4650 RtcR Sigma54-dependent 97.5 0.0003 6.6E-09 73.4 8.9 80 222-301 203-297 (531)
295 PF07693 KAP_NTPase: KAP famil 97.5 0.0016 3.5E-08 69.7 14.8 81 285-377 171-266 (325)
296 PRK15455 PrkA family serine pr 97.5 0.00014 3.1E-09 82.9 6.6 63 192-260 74-137 (644)
297 COG1618 Predicted nucleotide k 97.5 0.00049 1.1E-08 66.5 9.2 26 226-251 4-29 (179)
298 PHA02624 large T antigen; Prov 97.5 0.00024 5.2E-09 81.5 7.8 118 225-359 429-560 (647)
299 KOG2543 Origin recognition com 97.5 0.0021 4.6E-08 69.7 14.3 162 194-375 6-194 (438)
300 PRK07261 topology modulation p 97.5 0.00023 4.9E-09 69.9 6.6 35 229-263 2-36 (171)
301 COG1373 Predicted ATPase (AAA+ 97.5 0.00085 1.8E-08 74.7 11.8 123 229-368 39-161 (398)
302 PF05707 Zot: Zonular occluden 97.5 8.5E-05 1.8E-09 74.3 3.5 123 230-361 3-146 (193)
303 PRK00131 aroK shikimate kinase 97.5 0.00013 2.8E-09 70.6 4.6 34 226-259 3-36 (175)
304 PRK14722 flhF flagellar biosyn 97.5 0.00045 9.7E-09 76.0 9.3 111 225-347 135-267 (374)
305 PRK05973 replicative DNA helic 97.5 0.0032 7E-08 65.2 15.1 34 229-262 66-102 (237)
306 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0045 9.7E-08 70.6 17.3 123 286-427 81-204 (489)
307 TIGR00416 sms DNA repair prote 97.4 0.00074 1.6E-08 76.4 10.7 74 227-300 94-184 (454)
308 PRK00771 signal recognition pa 97.4 0.0027 5.9E-08 71.4 14.7 39 225-263 93-134 (437)
309 PRK05800 cobU adenosylcobinami 97.4 0.0015 3.2E-08 64.3 10.9 93 229-322 3-113 (170)
310 PF13671 AAA_33: AAA domain; P 97.4 0.00048 1E-08 64.5 7.2 34 230-265 2-35 (143)
311 PF06745 KaiC: KaiC; InterPro 97.4 0.0016 3.4E-08 66.5 11.6 108 223-337 15-159 (226)
312 cd00984 DnaB_C DnaB helicase C 97.3 0.0017 3.6E-08 66.7 11.1 39 223-261 9-51 (242)
313 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.0018 3.8E-08 66.0 11.0 113 227-346 29-161 (213)
314 PF13604 AAA_30: AAA domain; P 97.3 0.00063 1.4E-08 68.3 7.6 97 229-338 20-132 (196)
315 PRK09354 recA recombinase A; P 97.3 0.0012 2.7E-08 71.8 10.2 112 224-335 55-193 (349)
316 PF06309 Torsin: Torsin; Inte 97.3 0.0015 3.2E-08 60.9 9.3 52 194-251 25-77 (127)
317 cd01131 PilT Pilus retraction 97.3 0.00099 2.1E-08 67.0 8.6 67 230-296 4-84 (198)
318 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0021 4.5E-08 66.4 11.1 40 223-262 17-59 (237)
319 cd00046 DEXDc DEAD-like helica 97.3 0.0022 4.9E-08 58.0 10.2 24 228-251 1-24 (144)
320 PRK04296 thymidine kinase; Pro 97.2 0.001 2.2E-08 66.5 8.2 70 229-298 4-90 (190)
321 cd01122 GP4d_helicase GP4d_hel 97.2 0.0022 4.8E-08 67.1 11.2 39 223-261 26-68 (271)
322 PRK10536 hypothetical protein; 97.2 0.0015 3.3E-08 68.2 9.5 46 191-250 52-97 (262)
323 PRK13947 shikimate kinase; Pro 97.2 0.00034 7.3E-09 68.0 4.3 31 229-259 3-33 (171)
324 PRK12723 flagellar biosynthesi 97.2 0.0016 3.6E-08 72.0 10.1 139 195-346 143-306 (388)
325 COG3854 SpoIIIAA ncharacterize 97.2 0.0022 4.8E-08 65.3 10.0 70 229-298 139-230 (308)
326 cd01128 rho_factor Transcripti 97.2 0.0038 8.3E-08 65.1 12.2 25 229-253 18-42 (249)
327 PHA02774 E1; Provisional 97.2 0.0011 2.3E-08 76.0 8.6 53 228-295 435-488 (613)
328 PRK06762 hypothetical protein; 97.2 0.0011 2.4E-08 64.2 7.6 39 227-265 2-40 (166)
329 PRK13948 shikimate kinase; Pro 97.2 0.0014 3E-08 65.2 8.4 34 226-259 9-42 (182)
330 PF00437 T2SE: Type II/IV secr 97.2 0.00078 1.7E-08 70.7 6.9 99 189-297 99-208 (270)
331 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0053 1.2E-07 62.5 12.8 106 226-337 15-152 (224)
332 PRK03839 putative kinase; Prov 97.1 0.00035 7.7E-09 68.7 3.9 31 229-259 2-32 (180)
333 PRK04301 radA DNA repair and r 97.1 0.0022 4.7E-08 69.2 10.3 114 224-337 99-251 (317)
334 PF03266 NTPase_1: NTPase; In 97.1 0.00059 1.3E-08 67.0 5.2 27 229-255 1-30 (168)
335 cd00544 CobU Adenosylcobinamid 97.1 0.004 8.6E-08 61.2 11.0 103 230-338 2-125 (169)
336 PLN03187 meiotic recombination 97.1 0.0026 5.7E-08 69.3 10.6 109 228-336 127-273 (344)
337 PF14516 AAA_35: AAA-like doma 97.1 0.036 7.7E-07 60.3 19.3 157 229-394 33-231 (331)
338 PRK00625 shikimate kinase; Pro 97.1 0.00046 1E-08 68.1 4.3 31 229-259 2-32 (173)
339 COG0703 AroK Shikimate kinase 97.1 0.0013 2.8E-08 64.5 7.3 32 228-259 3-34 (172)
340 PRK14974 cell division protein 97.1 0.0034 7.3E-08 68.3 11.2 73 226-298 139-234 (336)
341 cd03216 ABC_Carb_Monos_I This 97.1 0.0016 3.4E-08 63.4 7.8 107 225-342 24-145 (163)
342 cd00464 SK Shikimate kinase (S 97.1 0.00047 1E-08 65.4 4.1 31 229-259 1-31 (154)
343 TIGR02236 recomb_radA DNA repa 97.1 0.003 6.6E-08 67.8 10.5 114 224-337 92-245 (310)
344 PRK13946 shikimate kinase; Pro 97.1 0.0015 3.2E-08 64.8 7.5 34 226-259 9-42 (184)
345 TIGR02238 recomb_DMC1 meiotic 97.0 0.0036 7.9E-08 67.5 10.6 110 227-336 96-243 (313)
346 smart00534 MUTSac ATPase domai 97.0 0.0051 1.1E-07 61.0 11.0 102 230-340 2-123 (185)
347 PRK13949 shikimate kinase; Pro 97.0 0.00057 1.2E-08 67.0 4.1 31 229-259 3-33 (169)
348 PF05272 VirE: Virulence-assoc 97.0 0.0019 4E-08 65.2 7.7 124 203-359 34-168 (198)
349 COG4619 ABC-type uncharacteriz 97.0 0.0046 9.9E-08 60.4 9.9 25 227-251 29-53 (223)
350 PTZ00202 tuzin; Provisional 97.0 0.027 5.8E-07 62.9 17.0 62 192-262 260-321 (550)
351 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0047 1E-07 64.8 11.0 36 226-261 35-73 (259)
352 PRK09376 rho transcription ter 97.0 0.0024 5.2E-08 70.3 8.9 23 230-252 172-194 (416)
353 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00062 1.3E-08 66.9 4.1 34 230-265 2-35 (183)
354 PLN02200 adenylate kinase fami 97.0 0.00089 1.9E-08 69.2 5.3 41 223-265 39-79 (234)
355 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0021 4.6E-08 63.6 7.8 103 228-341 26-134 (177)
356 PRK14532 adenylate kinase; Pro 97.0 0.00069 1.5E-08 67.0 4.1 36 229-266 2-37 (188)
357 PTZ00035 Rad51 protein; Provis 97.0 0.006 1.3E-07 66.5 11.6 111 225-335 116-264 (337)
358 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.002 4.3E-08 61.9 7.1 106 227-343 25-144 (157)
359 cd00227 CPT Chloramphenicol (C 97.0 0.00078 1.7E-08 66.1 4.3 37 228-264 3-39 (175)
360 cd03243 ABC_MutS_homologs The 97.0 0.0038 8.2E-08 62.7 9.3 22 228-249 30-51 (202)
361 COG4088 Predicted nucleotide k 96.9 0.0037 8.1E-08 62.7 8.9 22 230-251 4-25 (261)
362 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0049 1.1E-07 64.0 10.2 35 230-264 2-39 (249)
363 PRK06217 hypothetical protein; 96.9 0.00082 1.8E-08 66.5 4.2 31 229-259 3-33 (183)
364 PF04665 Pox_A32: Poxvirus A32 96.9 0.0067 1.5E-07 62.9 10.8 133 225-373 11-169 (241)
365 PRK04328 hypothetical protein; 96.9 0.012 2.7E-07 61.2 13.0 38 224-261 20-60 (249)
366 KOG3347 Predicted nucleotide k 96.9 0.00075 1.6E-08 64.3 3.5 31 229-259 9-39 (176)
367 cd02020 CMPK Cytidine monophos 96.9 0.00082 1.8E-08 63.0 3.9 30 230-259 2-31 (147)
368 PRK14531 adenylate kinase; Pro 96.9 0.00095 2.1E-08 66.1 4.4 30 228-257 3-32 (183)
369 PRK04841 transcriptional regul 96.9 0.0095 2.1E-07 72.7 13.9 150 228-395 33-218 (903)
370 PRK12339 2-phosphoglycerate ki 96.9 0.0088 1.9E-07 60.3 11.3 29 227-255 3-31 (197)
371 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0049 1.1E-07 58.7 9.0 101 226-342 25-130 (144)
372 cd01130 VirB11-like_ATPase Typ 96.9 0.00093 2E-08 66.4 4.1 70 227-296 25-110 (186)
373 cd02027 APSK Adenosine 5'-phos 96.9 0.0033 7.2E-08 60.2 7.7 35 230-264 2-39 (149)
374 TIGR01420 pilT_fam pilus retra 96.9 0.0022 4.8E-08 70.0 7.4 68 229-296 124-205 (343)
375 cd01428 ADK Adenylate kinase ( 96.9 0.00093 2E-08 66.0 4.0 33 230-264 2-34 (194)
376 PTZ00088 adenylate kinase 1; P 96.9 0.0012 2.6E-08 68.1 4.8 34 226-259 5-38 (229)
377 PF09848 DUF2075: Uncharacteri 96.8 0.0042 9E-08 68.0 9.3 23 229-251 3-25 (352)
378 cd02021 GntK Gluconate kinase 96.8 0.00098 2.1E-08 63.3 3.9 33 230-264 2-34 (150)
379 TIGR02782 TrbB_P P-type conjug 96.8 0.00086 1.9E-08 71.8 3.8 69 228-296 133-214 (299)
380 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0085 1.9E-07 61.1 11.0 38 223-260 16-56 (229)
381 cd03238 ABC_UvrA The excision 96.8 0.0048 1E-07 61.1 8.7 104 227-341 21-151 (176)
382 TIGR02655 circ_KaiC circadian 96.8 0.006 1.3E-07 69.7 10.7 78 223-300 257-367 (484)
383 PRK09519 recA DNA recombinatio 96.8 0.0059 1.3E-07 72.8 10.7 110 227-336 60-194 (790)
384 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0062 1.3E-07 65.8 10.1 113 224-336 93-243 (316)
385 PRK12724 flagellar biosynthesi 96.8 0.017 3.6E-07 64.5 13.5 36 227-262 223-262 (432)
386 PLN03186 DNA repair protein RA 96.8 0.0058 1.3E-07 66.7 9.8 111 227-337 123-271 (342)
387 PRK13900 type IV secretion sys 96.8 0.0025 5.5E-08 69.2 7.0 70 227-296 160-245 (332)
388 TIGR01313 therm_gnt_kin carboh 96.8 0.001 2.2E-08 64.2 3.6 32 230-263 1-32 (163)
389 PRK14530 adenylate kinase; Pro 96.8 0.0012 2.7E-08 66.9 4.3 30 229-258 5-34 (215)
390 PRK13695 putative NTPase; Prov 96.8 0.0095 2.1E-07 58.3 10.4 23 229-251 2-24 (174)
391 COG2874 FlaH Predicted ATPases 96.8 0.01 2.2E-07 60.1 10.5 126 214-348 13-176 (235)
392 COG0563 Adk Adenylate kinase a 96.8 0.0015 3.3E-08 64.7 4.6 33 229-263 2-34 (178)
393 PRK05057 aroK shikimate kinase 96.8 0.0015 3.2E-08 64.2 4.5 34 227-260 4-37 (172)
394 PRK08233 hypothetical protein; 96.8 0.004 8.7E-08 60.7 7.6 33 228-260 4-37 (182)
395 PF00448 SRP54: SRP54-type pro 96.8 0.003 6.4E-08 63.6 6.7 108 227-343 1-131 (196)
396 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.01 2.2E-07 59.6 10.6 20 229-248 30-49 (200)
397 cd03282 ABC_MSH4_euk MutS4 hom 96.8 0.0082 1.8E-07 60.8 9.9 103 228-343 30-155 (204)
398 COG5245 DYN1 Dynein, heavy cha 96.7 0.0078 1.7E-07 74.1 10.9 179 224-411 1491-1716(3164)
399 PRK06581 DNA polymerase III su 96.7 0.014 3E-07 60.4 11.3 139 226-380 14-167 (263)
400 cd03115 SRP The signal recogni 96.7 0.018 3.9E-07 56.1 11.9 34 230-263 3-39 (173)
401 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0042 9E-08 60.8 7.4 103 228-341 27-157 (173)
402 PRK11889 flhF flagellar biosyn 96.7 0.02 4.3E-07 63.3 13.3 94 200-297 217-331 (436)
403 PRK08154 anaerobic benzoate ca 96.7 0.0041 8.9E-08 66.9 7.9 36 224-259 130-165 (309)
404 PF13481 AAA_25: AAA domain; P 96.7 0.0057 1.2E-07 60.4 8.4 72 230-301 35-156 (193)
405 PRK03731 aroL shikimate kinase 96.7 0.0016 3.6E-08 63.3 4.4 31 229-259 4-34 (171)
406 PRK06547 hypothetical protein; 96.7 0.0017 3.7E-08 64.0 4.5 35 225-259 13-47 (172)
407 PF08298 AAA_PrkA: PrkA AAA do 96.7 0.004 8.7E-08 67.5 7.5 82 193-281 59-143 (358)
408 cd01125 repA Hexameric Replica 96.7 0.019 4.1E-07 59.2 12.2 21 230-250 4-24 (239)
409 cd03247 ABCC_cytochrome_bd The 96.7 0.0074 1.6E-07 59.3 8.8 105 226-342 27-160 (178)
410 COG1102 Cmk Cytidylate kinase 96.7 0.0015 3.2E-08 63.2 3.6 28 230-257 3-30 (179)
411 PRK14528 adenylate kinase; Pro 96.6 0.0018 4E-08 64.4 4.2 30 229-258 3-32 (186)
412 COG2805 PilT Tfp pilus assembl 96.6 0.0075 1.6E-07 63.8 8.8 72 226-297 123-209 (353)
413 TIGR02655 circ_KaiC circadian 96.6 0.017 3.8E-07 66.0 12.7 40 223-262 17-60 (484)
414 cd03246 ABCC_Protease_Secretio 96.6 0.0036 7.9E-08 61.2 6.2 103 228-341 29-158 (173)
415 COG1120 FepC ABC-type cobalami 96.6 0.0068 1.5E-07 63.4 8.3 29 223-251 22-52 (258)
416 cd03227 ABC_Class2 ABC-type Cl 96.6 0.011 2.5E-07 57.2 9.5 22 227-248 21-42 (162)
417 COG5271 MDN1 AAA ATPase contai 96.6 0.007 1.5E-07 75.0 9.3 134 229-374 890-1047(4600)
418 PRK13764 ATPase; Provisional 96.6 0.0029 6.2E-08 73.6 6.1 69 227-296 257-334 (602)
419 PRK10416 signal recognition pa 96.6 0.025 5.5E-07 61.2 12.9 62 200-261 86-151 (318)
420 cd03228 ABCC_MRP_Like The MRP 96.6 0.0042 9E-08 60.7 6.3 105 226-342 27-158 (171)
421 TIGR02788 VirB11 P-type DNA tr 96.6 0.0029 6.3E-08 68.0 5.6 73 224-296 141-228 (308)
422 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0019 4.1E-08 63.4 3.8 30 229-258 5-34 (188)
423 cd03287 ABC_MSH3_euk MutS3 hom 96.6 0.016 3.4E-07 59.6 10.6 104 228-342 32-157 (222)
424 PRK14527 adenylate kinase; Pro 96.6 0.002 4.3E-08 64.1 4.0 32 226-257 5-36 (191)
425 cd03223 ABCD_peroxisomal_ALDP 96.6 0.0095 2.1E-07 58.0 8.6 101 226-340 26-149 (166)
426 cd03214 ABC_Iron-Siderophores_ 96.6 0.0075 1.6E-07 59.4 7.9 106 227-342 25-161 (180)
427 COG4178 ABC-type uncharacteriz 96.6 0.0048 1E-07 71.3 7.4 54 275-340 522-575 (604)
428 PRK10867 signal recognition pa 96.6 0.028 6.1E-07 63.2 13.4 75 224-298 97-195 (433)
429 PRK02496 adk adenylate kinase; 96.6 0.002 4.4E-08 63.5 3.8 30 229-258 3-32 (184)
430 PF12780 AAA_8: P-loop contain 96.5 0.016 3.6E-07 61.1 10.8 91 194-296 8-99 (268)
431 TIGR01351 adk adenylate kinase 96.5 0.0021 4.5E-08 65.1 3.9 29 230-258 2-30 (210)
432 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0059 1.3E-07 64.3 7.4 92 191-296 57-159 (264)
433 COG1127 Ttg2A ABC-type transpo 96.5 0.0038 8.2E-08 64.1 5.7 33 219-251 24-58 (263)
434 PRK06696 uridine kinase; Valid 96.5 0.0052 1.1E-07 62.8 6.8 40 226-265 21-63 (223)
435 COG3842 PotA ABC-type spermidi 96.5 0.0047 1E-07 67.3 6.7 28 223-250 25-54 (352)
436 PRK13851 type IV secretion sys 96.5 0.0026 5.6E-08 69.4 4.8 71 226-296 161-246 (344)
437 PF01745 IPT: Isopentenyl tran 96.5 0.0037 8.1E-08 63.2 5.4 138 229-380 3-145 (233)
438 PRK04040 adenylate kinase; Pro 96.5 0.0025 5.4E-08 63.7 4.2 30 227-256 2-33 (188)
439 smart00487 DEXDc DEAD-like hel 96.5 0.016 3.4E-07 55.8 9.7 33 228-260 25-62 (201)
440 TIGR01526 nadR_NMN_Atrans nico 96.5 0.0065 1.4E-07 65.9 7.6 39 227-265 162-200 (325)
441 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0073 1.6E-07 60.6 7.5 42 225-266 13-55 (199)
442 PF13245 AAA_19: Part of AAA d 96.5 0.004 8.6E-08 53.0 4.7 32 229-260 12-50 (76)
443 TIGR03499 FlhF flagellar biosy 96.5 0.01 2.2E-07 63.1 8.9 37 226-262 193-234 (282)
444 PRK00279 adk adenylate kinase; 96.5 0.0026 5.5E-08 64.6 4.1 29 230-258 3-31 (215)
445 PRK05541 adenylylsulfate kinas 96.5 0.0069 1.5E-07 59.3 7.0 39 225-263 5-46 (176)
446 PHA02530 pseT polynucleotide k 96.4 0.0073 1.6E-07 64.2 7.5 38 227-265 2-39 (300)
447 COG2884 FtsE Predicted ATPase 96.4 0.017 3.7E-07 57.5 9.3 32 220-251 19-52 (223)
448 PF10236 DAP3: Mitochondrial r 96.4 0.086 1.9E-06 56.8 15.6 95 286-380 156-283 (309)
449 TIGR00064 ftsY signal recognit 96.4 0.027 5.9E-07 59.6 11.6 39 224-262 69-110 (272)
450 TIGR00152 dephospho-CoA kinase 96.4 0.023 5E-07 56.4 10.4 35 230-266 2-36 (188)
451 PF08423 Rad51: Rad51; InterP 96.4 0.012 2.5E-07 61.8 8.7 108 230-337 41-186 (256)
452 cd03229 ABC_Class3 This class 96.4 0.0095 2.1E-07 58.6 7.6 24 228-251 27-50 (178)
453 COG2804 PulE Type II secretory 96.4 0.0057 1.2E-07 68.9 6.6 95 189-297 233-338 (500)
454 COG1126 GlnQ ABC-type polar am 96.4 0.005 1.1E-07 62.4 5.5 21 229-249 30-50 (240)
455 PRK13808 adenylate kinase; Pro 96.4 0.0098 2.1E-07 64.5 8.1 29 230-258 3-31 (333)
456 PF13238 AAA_18: AAA domain; P 96.4 0.0025 5.3E-08 58.1 3.1 22 230-251 1-22 (129)
457 TIGR01448 recD_rel helicase, p 96.4 0.015 3.2E-07 69.6 10.4 100 229-342 340-458 (720)
458 PRK13833 conjugal transfer pro 96.4 0.0057 1.2E-07 66.2 6.3 70 227-296 144-225 (323)
459 PRK01184 hypothetical protein; 96.4 0.003 6.5E-08 62.2 3.8 29 229-258 3-31 (184)
460 TIGR00767 rho transcription te 96.4 0.0093 2E-07 66.0 8.0 24 229-252 170-193 (415)
461 PRK14730 coaE dephospho-CoA ki 96.3 0.0094 2E-07 59.9 7.3 36 229-266 3-38 (195)
462 PRK09302 circadian clock prote 96.3 0.04 8.6E-07 63.4 13.4 111 224-340 28-178 (509)
463 PRK00889 adenylylsulfate kinas 96.3 0.015 3.2E-07 56.9 8.4 38 227-264 4-44 (175)
464 COG1936 Predicted nucleotide k 96.3 0.0029 6.3E-08 61.9 3.2 30 229-259 2-31 (180)
465 TIGR02525 plasmid_TraJ plasmid 96.3 0.006 1.3E-07 67.3 6.1 68 229-296 151-235 (372)
466 cd03213 ABCG_EPDR ABCG transpo 96.3 0.013 2.8E-07 58.5 8.1 27 225-251 33-59 (194)
467 PF00406 ADK: Adenylate kinase 96.3 0.0028 6.1E-08 60.5 3.1 33 232-266 1-33 (151)
468 PRK04182 cytidylate kinase; Pr 96.3 0.0037 8.1E-08 60.8 3.9 29 229-257 2-30 (180)
469 PHA00012 I assembly protein 96.3 0.012 2.5E-07 63.3 7.7 111 230-347 4-136 (361)
470 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.019 4E-07 59.9 9.0 55 276-341 147-201 (254)
471 COG1066 Sms Predicted ATP-depe 96.2 0.028 6E-07 61.9 10.6 74 229-302 95-184 (456)
472 TIGR02533 type_II_gspE general 96.2 0.013 2.9E-07 66.9 8.6 93 190-296 218-321 (486)
473 COG1118 CysA ABC-type sulfate/ 96.2 0.016 3.5E-07 61.6 8.4 23 229-251 30-52 (345)
474 COG4586 ABC-type uncharacteriz 96.2 0.019 4.2E-07 60.1 8.9 32 220-251 41-74 (325)
475 cd02022 DPCK Dephospho-coenzym 96.2 0.022 4.8E-07 56.2 9.0 34 230-266 2-35 (179)
476 PLN02674 adenylate kinase 96.2 0.0055 1.2E-07 63.7 4.9 39 225-265 29-67 (244)
477 PRK09302 circadian clock prote 96.2 0.028 6.2E-07 64.6 11.3 107 224-337 270-407 (509)
478 TIGR01425 SRP54_euk signal rec 96.2 0.038 8.2E-07 62.0 11.8 73 225-297 98-193 (429)
479 PF05970 PIF1: PIF1-like helic 96.2 0.021 4.6E-07 62.8 9.8 44 200-252 4-47 (364)
480 PF02562 PhoH: PhoH-like prote 96.2 0.013 2.7E-07 59.5 7.3 23 229-251 21-43 (205)
481 PLN02199 shikimate kinase 96.2 0.0093 2E-07 63.5 6.4 32 228-259 103-134 (303)
482 TIGR00959 ffh signal recogniti 96.2 0.059 1.3E-06 60.6 13.1 74 225-298 97-194 (428)
483 PF00488 MutS_V: MutS domain V 96.2 0.051 1.1E-06 56.2 11.8 105 227-342 43-169 (235)
484 cd03215 ABC_Carb_Monos_II This 96.2 0.014 3E-07 57.6 7.3 25 227-251 26-50 (182)
485 TIGR02173 cyt_kin_arch cytidyl 96.2 0.0048 1E-07 59.6 3.9 29 230-258 3-31 (171)
486 PRK08099 bifunctional DNA-bind 96.2 0.011 2.5E-07 65.8 7.3 36 225-260 217-252 (399)
487 PF01926 MMR_HSR1: 50S ribosom 96.1 0.027 5.9E-07 50.9 8.6 21 230-250 2-22 (116)
488 cd02019 NK Nucleoside/nucleoti 96.1 0.0058 1.3E-07 50.8 3.7 29 230-258 2-31 (69)
489 PF13479 AAA_24: AAA domain 96.1 0.0086 1.9E-07 60.9 5.7 68 227-298 3-80 (213)
490 PRK13894 conjugal transfer ATP 96.1 0.0096 2.1E-07 64.4 6.3 70 227-296 148-229 (319)
491 PF13521 AAA_28: AAA domain; P 96.1 0.0038 8.2E-08 60.3 2.9 30 230-260 2-31 (163)
492 COG1136 SalX ABC-type antimicr 96.1 0.038 8.3E-07 56.7 10.2 22 229-250 33-54 (226)
493 PF01583 APS_kinase: Adenylyls 96.1 0.016 3.5E-07 56.2 7.1 40 227-266 2-44 (156)
494 COG4608 AppF ABC-type oligopep 96.0 0.016 3.4E-07 60.7 7.1 73 227-299 39-140 (268)
495 cd03232 ABC_PDR_domain2 The pl 96.0 0.034 7.4E-07 55.4 9.4 24 227-250 33-56 (192)
496 COG4525 TauB ABC-type taurine 96.0 0.012 2.6E-07 58.8 5.9 29 223-251 27-55 (259)
497 PRK14526 adenylate kinase; Pro 96.0 0.0062 1.3E-07 62.0 4.0 29 229-257 2-30 (211)
498 TIGR02524 dot_icm_DotB Dot/Icm 96.0 0.025 5.4E-07 62.2 9.0 68 229-296 136-222 (358)
499 PRK12727 flagellar biosynthesi 96.0 0.051 1.1E-06 62.3 11.5 26 226-251 349-374 (559)
500 COG0468 RecA RecA/RadA recombi 96.0 0.058 1.3E-06 57.2 11.2 116 222-337 53-194 (279)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-129 Score=1039.79 Aligned_cols=600 Identities=58% Similarity=0.884 Sum_probs=531.0
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHhhcCCC-----CCCCHHHHHHHHHHHHHhccc--chhHHHHHHhhcccccccchhh
Q 005661 36 EASEVAHLRELYRR-NDPEAVIRLFESQPS-----LHSNQSALSEYVKALVKVDRL--DDSELLKTLQKGIANSARDEES 107 (685)
Q Consensus 36 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~y~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 107 (685)
..++.+||+..+.+ +.+..++.+|+..+. .++.++++..|.+++...+-. ...........+..+..+...+
T Consensus 117 ~~s~~~~~k~al~~~e~s~~~~~~~~~~~~~~~~l~a~s~~~~~~~~q~~~~~g~~~~~~~~~~~~~~~~~a~~l~~~l~ 196 (752)
T KOG0734|consen 117 HDSAQSFYKNALQNLEWSLRVVSSFELQGAHVRALPASSSALLPFYIQALQRRGFKTLKSREGVGRRTRSTAERLNESLA 196 (752)
T ss_pred HHHHHHHHHHHHhhceeeeeeecccccCcchhhccccCChhhHHHHHHHHHhcccchhhhhhhhcccccccHHHHhHHHh
Confidence 55778999999988 789999999985532 157778999999999765432 2111110111111111111000
Q ss_pred cccccccc---ccCCCc----c------CCccCCCCCCeEEEecc-----CcccHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005661 108 IGGISAFK---NVGKPT----K------DGVLGTASAPIHMVAAE-----GGHFKEQLWRTIRTIALGFLLISGVGALIE 169 (685)
Q Consensus 108 ~~~~~~~~---~~~~~~----~------~~~~~~~~~p~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (685)
.+. ..++ .++... . ..+-.+.+.|.|++..+ ...+...+|+++++.++++++++|+..+++
T Consensus 197 ~~~-~~~~~~~~~~~ps~~e~~~~~~g~~n~~es~k~p~~~~~~e~~~s~~~~~~~~~~k~i~~~i~~~~~~~G~~~~~~ 275 (752)
T KOG0734|consen 197 NSP-SSLKGDLQVGAPSLVELLDKLEGTKNIPESHKDPFHVGFVEGFLSNRTTKAGRLVKTIRTTIVGYLLLLGIYALLE 275 (752)
T ss_pred cCc-hhcCCCccCCCchhHHHhhhhhccCCcchhccCceeeeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 1111 111110 1 12334778999998764 445667899999988889999999999988
Q ss_pred ccccc----cccCCccccCCCCCCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHH
Q 005661 170 DRGIS----KGLGLHEEVQPSLESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 170 ~~~~~----~~~~~~~~~~~~~~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAr 245 (685)
+.+.. ...++..+++|....+++|+||.|+|++|++|+|+|+||++|++|.++|+++||||||+||||||||+|||
T Consensus 276 ~~~l~~i~~~~~gl~~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLAR 355 (752)
T KOG0734|consen 276 NTGLSGIFRSTTGLDSEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLAR 355 (752)
T ss_pred ccccccccccccccccccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHH
Confidence 87542 34567789999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 005661 246 AIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK 325 (685)
Q Consensus 246 alA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~ 325 (685)
|+|+|+++|||+.++++|.++|+|++++++|++|..|++++||||||||||+++++|.+.+..+..+++||||.+||||.
T Consensus 356 AvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~ 435 (752)
T KOG0734|consen 356 AVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK 435 (752)
T ss_pred HhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred cCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHH
Q 005661 326 QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 405 (685)
Q Consensus 326 ~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~ 405 (685)
++.+||||++||+|+.||+||.||||||++|.+|.||.++|.+||+.|+.++..+.++|+..||+.|+||+|+||+|+||
T Consensus 436 qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 436 QNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred cCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHhcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCccceE
Q 005661 406 IAALKAAMDGAKAVTMADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMV 485 (685)
Q Consensus 406 ~A~~~A~~~~~~~It~edl~~A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~G~~ 485 (685)
+|++.|+.++...|+|.||++|.++++||++|++..++++.++++||||+|||||++++.++.|+||+||+|||.+||+|
T Consensus 516 qAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t 595 (752)
T KOG0734|consen 516 QAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHT 595 (752)
T ss_pred HHHHHHHhcCcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcccccHHHHHHHHHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCCCCC
Q 005661 486 AQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDNGKS 565 (685)
Q Consensus 486 ~~~p~~~~~~~t~~~l~~~i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~~~~ 565 (685)
.++|++|++..||.||+++++||||||+||||+||.+.+||||++||++||++|++||++||||+++|++++...+++.+
T Consensus 596 ~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~~s 675 (752)
T KOG0734|consen 596 SQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSSS 675 (752)
T ss_pred eecCccchhhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCHHHHHHHHHhhhhhhhHhHHHH
Q 005661 566 MSTETRLLIEKEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQVNSQQQQQHQQI 636 (685)
Q Consensus 566 ~s~~~~~~id~eV~~ll~~a~~~a~~iL~~~~~~L~~lA~~Lle~etL~~~ei~~il~~~~~~~~~~~~~~ 636 (685)
++++++..||+||+++|+++|+||+.||+.|.++|+.||++||+||||+++||+.+|++.....+.....+
T Consensus 676 ~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~~~~~k~~~~~~ 746 (752)
T KOG0734|consen 676 LSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGKSDELKTNQESV 746 (752)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccchhhhcccchh
Confidence 99999999999999999999999999999999999999999999999999999999988744443333333
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-99 Score=843.13 Aligned_cols=438 Identities=58% Similarity=0.899 Sum_probs=424.6
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
...++|.||.|+|++|++|.|+|++|++|.+|..+|++.|+|+||+||||||||+|||++|+++++||+++++|+|+++|
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcc
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 344 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 344 (685)
+|.++.++|++|.+|++++||||||||||+++..|.. ..+++.++++|+||.+||||..+.+|+||++||+|+.||+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ 303 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchH
Confidence 9999999999999999999999999999999998853 4678899999999999999999999999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 424 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 424 (685)
||+||||||++|.++.||..+|.+|++.|+++.....++|+..+|+.|+||+|+|+.|++|+|++.|+++++..|++.||
T Consensus 304 ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i 383 (596)
T COG0465 304 ALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDI 383 (596)
T ss_pred hhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCccceEEecCCCCcccccHHHHHHH
Q 005661 425 EYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLAR 504 (685)
Q Consensus 425 ~~A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~~ 504 (685)
++|++++++|+++++..+++++++.+||||+|||++++++++++++||+||+|||+++|||.++|++|++++||.+++++
T Consensus 384 ~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~ 463 (596)
T COG0465 384 EEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDR 463 (596)
T ss_pred HHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCC--------CCCCCHHHHHHHHH
Q 005661 505 LDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDN--------GKSMSTETRLLIEK 576 (685)
Q Consensus 505 i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~--------~~~~s~~~~~~id~ 576 (685)
|+++||||+|||++||. ++|||+++||++||.+|+.||++||||+++|++.+..... .+.+|+++...||.
T Consensus 464 i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~ 542 (596)
T COG0465 464 IDVLLGGRAAEELIFGY-EITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDR 542 (596)
T ss_pred HHHHhCCcHhhhhhhcc-cccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHH
Confidence 99999999999999998 7999999999999999999999999999999999875432 13699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCHHHHHHHHHhhh
Q 005661 577 EVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQVN 626 (685)
Q Consensus 577 eV~~ll~~a~~~a~~iL~~~~~~L~~lA~~Lle~etL~~~ei~~il~~~~ 626 (685)
||+++++++|++++.||.+|++.++.+++.|+++|||++++|.+|+...+
T Consensus 543 evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 543 EVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999998754
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-93 Score=810.35 Aligned_cols=441 Identities=52% Similarity=0.823 Sum_probs=421.5
Q ss_pred CCCCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh
Q 005661 186 SLESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 265 (685)
Q Consensus 186 ~~~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~ 265 (685)
..+..++|+||+|+|++|++|+|+|+||+||++|.++|+++|+|+||+||||||||+||||+|+|+|+||+.+++++|.+
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCC----CCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc
Q 005661 266 MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRN----PKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 341 (685)
Q Consensus 266 ~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~----~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 341 (685)
+++|.++.++|++|..|+.++||||||||||+++.+|. ...+++..+++||||.+||||....+|+|+++||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999884 24567889999999999999999999999999999999
Q ss_pred CcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccC
Q 005661 342 LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVT 420 (685)
Q Consensus 342 LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It 420 (685)
||++|+||||||++|.+++||..+|.+|++.|+++.... +++|+..+|.+|+||+|+||.|+||+|++.|++++.+.|+
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999998774 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCccceEEecCCCCcccccHHH
Q 005661 421 MADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQ 500 (685)
Q Consensus 421 ~edl~~A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~ 500 (685)
..||.+|+++++.|.++++..++.++++.+||||||||+++|++++.+|+.||||+| |+++||++++|.++ +++|+++
T Consensus 543 ~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~q 620 (774)
T KOG0731|consen 543 TKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQ 620 (774)
T ss_pred hhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc-ccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999 77999999999977 9999999
Q ss_pred HHHHHHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCC-----CCCCCHHHHHHHH
Q 005661 501 MLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDN-----GKSMSTETRLLIE 575 (685)
Q Consensus 501 l~~~i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~-----~~~~s~~~~~~id 575 (685)
|+++|++.||||||||++|| +++|||+.+||++||++|+.||++|||++++|++++..... ..++|..+.+.||
T Consensus 621 l~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id 699 (774)
T KOG0731|consen 621 LFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLID 699 (774)
T ss_pred HHHHHHHHhCcchhhheecC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHH
Confidence 99999999999999999999 68999999999999999999999999999999999854332 2578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCHHHHHHHHHhhhhhh
Q 005661 576 KEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQVNSQQ 629 (685)
Q Consensus 576 ~eV~~ll~~a~~~a~~iL~~~~~~L~~lA~~Lle~etL~~~ei~~il~~~~~~~ 629 (685)
.||+++++.||++|.++|.+|++.|+.||+.||++|+|+++|+.+++..++...
T Consensus 700 ~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~ 753 (774)
T KOG0731|consen 700 TEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGM 753 (774)
T ss_pred HHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcc
Confidence 999999999999999999999999999999999999999999999998876554
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=3.3e-86 Score=759.22 Aligned_cols=478 Identities=46% Similarity=0.744 Sum_probs=428.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccc-----cccc---cCCc-cccCCCCCCCCCCCcCCCcHHHHHHHHHHHHHhcCch
Q 005661 147 LWRTIRTIALGFLLISGVGALIEDRG-----ISKG---LGLH-EEVQPSLESNTKFSDVKGVDEAKQELEEIVHYLRDPK 217 (685)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~-~~~~~~~~~~~~f~dV~G~de~k~~L~e~v~~l~~~~ 217 (685)
+|..+..++++++++.++++++.... ..+. ++.. ..........++|+||+|++++++++.+++.++++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~ 206 (638)
T CHL00176 127 IVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFLKKPE 206 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHHhCHH
Confidence 44444445556666666665543321 0111 1111 1222333567899999999999999999999999999
Q ss_pred hhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchh
Q 005661 218 RFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDA 297 (685)
Q Consensus 218 ~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~ 297 (685)
.|..+|...|+|+||+||||||||++|+++|+++++||+.+++++|.+.+.|.+...++.+|..++...||||||||||.
T Consensus 207 ~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 207 RFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred HHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 005661 298 IGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM 374 (685)
Q Consensus 298 l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l 374 (685)
++.+|.. ..+.+..+++++||.+||++..+.+++||++||+++.+|++++||||||++|.+++|+.++|.+||+.|+
T Consensus 287 l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 287 VGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHA 366 (638)
T ss_pred hhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHH
Confidence 9876643 3456678899999999999998899999999999999999999999999999999999999999999999
Q ss_pred hhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcccccccccccchhhhhhhHHH
Q 005661 375 SKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGSERKSAVISDESRKLTAFHE 454 (685)
Q Consensus 375 ~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g~~~~~~~~s~~~~~~~A~hE 454 (685)
++.....++++..++..|+||+|+||+++|++|++.|.+++...|+++||+.|+++++.|.++++ ..++++++++||||
T Consensus 367 ~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hE 445 (638)
T CHL00176 367 RNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHE 445 (638)
T ss_pred hhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHh
Confidence 98777788899999999999999999999999999999999999999999999999999988764 56788899999999
Q ss_pred hhhHHHhhhcCCCCccceEEEeeCCCccceEEecCCCCcccccHHHHHHHHHHhhchHhhhhhhcCCCCccCCchHHHHH
Q 005661 455 GGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQ 534 (685)
Q Consensus 455 aGhA~va~~~~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~v~lgGraAEel~~G~~~~tsGa~~Dl~~ 534 (685)
+||||+++++++.++|+||||+|||+++||+++.|+++.+.+||.+|+++|++||||||||+++||+.++|+|+++||++
T Consensus 446 aGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~ 525 (638)
T CHL00176 446 VGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQ 525 (638)
T ss_pred hhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987899999999999
Q ss_pred HHHHHHHHHHHcCCCCCccceeeccCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005661 535 ATKLARAMVTKYGMSKEVGVVTHNYDDN-----------GKSMSTETRLLIEKEVRNFLDRAYNNAKTILTMHSKELHAL 603 (685)
Q Consensus 535 AT~lA~~mv~~~Gms~~~G~~~~~~~~~-----------~~~~s~~~~~~id~eV~~ll~~a~~~a~~iL~~~~~~L~~l 603 (685)
||++|+.||++|||| ++|++.+..... ...+|+++...||.||+++|++||++|++||.+|++.|++|
T Consensus 526 AT~iA~~mv~~~Gm~-~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~l 604 (638)
T CHL00176 526 VTNLARQMVTRFGMS-SIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLL 604 (638)
T ss_pred HHHHHHHHHHHhCCC-cCCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999 599998753322 13579999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCHHHHHHHHHhhh
Q 005661 604 ANALLEHETLSGSQIKALLAQVN 626 (685)
Q Consensus 604 A~~Lle~etL~~~ei~~il~~~~ 626 (685)
|++||++|||+++||++|++.+.
T Consensus 605 a~~Lle~Etl~~~ei~~il~~~~ 627 (638)
T CHL00176 605 VELLLQKETIDGDEFREIVNSYT 627 (638)
T ss_pred HHHHHHhCccCHHHHHHHHhhcC
Confidence 99999999999999999998653
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.9e-85 Score=756.93 Aligned_cols=439 Identities=55% Similarity=0.885 Sum_probs=416.5
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
....+|+|+.|.+.+++++.+++++++++..|..++...|+|+||+||||||||++++++++++++||+.++++++.+.+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcc
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 344 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 344 (685)
.|.+...++.+|..++...||||||||+|.++.+|.. ....+..++++++|.+||++..+.+++||+|||+|+.||+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 9999999999999999999999999999999987754 3445677899999999999999999999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 424 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 424 (685)
+++||||||++|.|++||.++|.+||+.|+++.....++|+..+++.|.||||+||.++|++|+..|.+.++..|+++||
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~ 385 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEF 385 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCccceEEecCCCCcccccHHHHHHH
Q 005661 425 EYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLAR 504 (685)
Q Consensus 425 ~~A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~~ 504 (685)
+.|++++.+|.++++..+++++++++||||+|||+++++++...+++||||+|||.++||++++|+++.+..||.+|+++
T Consensus 386 ~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l~~~ 465 (644)
T PRK10733 386 EKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQ 465 (644)
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHHHHH
Confidence 99999999998887778889999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCC----------CCCCCHHHHHHH
Q 005661 505 LDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDN----------GKSMSTETRLLI 574 (685)
Q Consensus 505 i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~----------~~~~s~~~~~~i 574 (685)
|+++|||||||+++||++++|||+++||++||+||+.||++||||+++|++.+...+. .+.+|+++...|
T Consensus 466 i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~~~i 545 (644)
T PRK10733 466 ISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARII 545 (644)
T ss_pred HHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHHHHH
Confidence 9999999999999999888999999999999999999999999999999998753221 246899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCHHHHHHHHHhhh
Q 005661 575 EKEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQVN 626 (685)
Q Consensus 575 d~eV~~ll~~a~~~a~~iL~~~~~~L~~lA~~Lle~etL~~~ei~~il~~~~ 626 (685)
|+||+++|++||++|++||++|++.|++||++|+|+|||+++||++|+++..
T Consensus 546 d~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~ 597 (644)
T PRK10733 546 DQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRD 597 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999998764
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=6.2e-81 Score=704.89 Aligned_cols=434 Identities=57% Similarity=0.896 Sum_probs=410.0
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
.++++|+||+|++++|+++++++.++++++.|...|..+|+|+||+||||||||++|+++|+++++||+.++++++.+.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcc
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 344 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 344 (685)
.|.+...++.+|..++..+||||||||||.++.++.. ....+..+++++||.+||++....+++||+|||+|+.||+
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~ 208 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDP 208 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCH
Confidence 9999999999999999999999999999999987754 2345677899999999999998899999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 424 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 424 (685)
+++||||||++|++++|+.++|.+||+.++++.....++++..++..+.||||+||+++|++|+..|.+++...|+.+||
T Consensus 209 al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l 288 (495)
T TIGR01241 209 ALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDI 288 (495)
T ss_pred HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 99999999999999999999999999999998777778899999999999999999999999999999999899999999
Q ss_pred HHHHHHHhcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCccceEEecCCCCcccccHHHHHHH
Q 005661 425 EYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLAR 504 (685)
Q Consensus 425 ~~A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~~ 504 (685)
..|++++..|.+++...+++++++++||||+|||+++++++...+++++||.|||.++||+++.|.++....|+.+++++
T Consensus 289 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~l~~~ 368 (495)
T TIGR01241 289 EEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDKYLYTKSQLLAQ 368 (495)
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCccccccCCHHHHHHH
Confidence 99999999998877777899999999999999999999998889999999999999999999999888889999999999
Q ss_pred HHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCC----------CCCCCCHHHHHHH
Q 005661 505 LDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDD----------NGKSMSTETRLLI 574 (685)
Q Consensus 505 i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~----------~~~~~s~~~~~~i 574 (685)
|+|||||||||+++||+ +|+|+++||++||++|+.||.+|||++++|++.+.... ....+|+.++..+
T Consensus 369 i~v~LaGraAE~~~~G~--~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~i 446 (495)
T TIGR01241 369 IAVLLGGRAAEEIIFGE--VTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREI 446 (495)
T ss_pred HHHHhhHHHHHHHHhcC--CCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHHHHHH
Confidence 99999999999999994 89999999999999999999999999999999886422 1246899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCHHHHHHHHH
Q 005661 575 EKEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLA 623 (685)
Q Consensus 575 d~eV~~ll~~a~~~a~~iL~~~~~~L~~lA~~Lle~etL~~~ei~~il~ 623 (685)
|.||+++|+++|++|++||++|++.|++||++|+++|+|+++||++|+.
T Consensus 447 d~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 447 DEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999973
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-64 Score=524.01 Aligned_cols=299 Identities=41% Similarity=0.636 Sum_probs=271.1
Q ss_pred CCccCCCCCCeEEEeccCcccHHHHHHHHHHHH-HHHHHHHhhhhhhhccccccccCCccccCCC-------CCCCCCCC
Q 005661 123 DGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIA-LGFLLISGVGALIEDRGISKGLGLHEEVQPS-------LESNTKFS 194 (685)
Q Consensus 123 ~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~f~ 194 (685)
.++++++.+|.|||.+.+......+-.++++.+ ...+.+.. -++.+.+|. ..|+++|+
T Consensus 86 ~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~--------------vLp~~~Dp~V~~M~v~e~PdvtY~ 151 (406)
T COG1222 86 RAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVR--------------VLPPEVDPRVSVMEVEEKPDVTYE 151 (406)
T ss_pred eEEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeee--------------eCCCccCchhheeeeccCCCCChh
Confidence 378999999999999988877777766655311 01111111 122233322 25789999
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhH
Q 005661 195 DVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGAR 273 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~ 273 (685)
||+|+++++++++|.|+. |++|+.|.++|+++|+|||||||||||||+||||+|++.++.|+.+.+|+|+.+|+|++++
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaR 231 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGAR 231 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCC
Q 005661 274 RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPG 350 (685)
Q Consensus 274 ~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpg 350 (685)
.+|++|..|+.++||||||||||+++.+|.. +...+.++++.+||++||||...++|.||+|||+++.|||||+|||
T Consensus 232 lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPG 311 (406)
T COG1222 232 LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPG 311 (406)
T ss_pred HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCC
Confidence 9999999999999999999999999998854 4567899999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 005661 351 RFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDK 430 (685)
Q Consensus 351 RFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~ 430 (685)
||||.|+||+||.++|.+||+.|.+++.+..++|++.|++.|+|+|||||+++|.+|.++|.|+.+..||++||.+|.++
T Consensus 312 R~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 312 RFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred cccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccc
Q 005661 431 IMMGS 435 (685)
Q Consensus 431 v~~g~ 435 (685)
++...
T Consensus 392 V~~~~ 396 (406)
T COG1222 392 VVKKK 396 (406)
T ss_pred HHhcc
Confidence 98754
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.1e-54 Score=520.33 Aligned_cols=308 Identities=22% Similarity=0.252 Sum_probs=267.4
Q ss_pred hhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH-------------------------------
Q 005661 219 FTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF------------------------------- 267 (685)
Q Consensus 219 ~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~------------------------------- 267 (685)
+.++|..+|+||||+||||||||+||||+|+++++||+.+++++|.+.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 4678999999999999999999999999999999999999999988543
Q ss_pred ----------h--hhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---cCCCEEE
Q 005661 268 ----------V--GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---QNEGIIV 332 (685)
Q Consensus 268 ----------~--g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~---~~~~ViV 332 (685)
. +++..+++.+|+.|++.+||||||||||+++.+. ....++++|+.+|+++. ...+|+|
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d------s~~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE------SNYLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc------cceehHHHHHHHhccccccCCCCCEEE
Confidence 1 2233458999999999999999999999998652 12235899999999864 4568999
Q ss_pred EEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHh--hhhcccC-cccHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005661 333 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM--SKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAAL 409 (685)
Q Consensus 333 IaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l--~~~~~~~-~vdl~~la~~t~G~sgadI~~lv~~A~~ 409 (685)
|||||+|+.|||||+||||||++|+|+.|+..+|.+++..++ ++..... .+|+..+|+.|+|||||||.+|||+|+.
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988653 3443433 3689999999999999999999999999
Q ss_pred HHHHcCCCccCHHHHHHHHHHHhcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeC------CCccc
Q 005661 410 KAAMDGAKAVTMADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPR------GMSLG 483 (685)
Q Consensus 410 ~A~~~~~~~It~edl~~A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~pr------g~~~G 483 (685)
.|+++++..|+.++++.|++++++|.+.+. .+..+++ +++||+||||++..+.+..|+++|||+|+ |.++|
T Consensus 1856 iAirq~ks~Id~~~I~~Al~Rq~~g~~~~~--~~~~~~~-ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~yl 1932 (2281)
T CHL00206 1856 ISITQKKSIIDTNTIRSALHRQTWDLRSQV--RSVQDHG-ILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYL 1932 (2281)
T ss_pred HHHHcCCCccCHHHHHHHHHHHHhhhhhcc--cCcchhh-hhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcccce
Confidence 999999999999999999999999987543 3333333 69999999999999999999999999642 45779
Q ss_pred eEEecCCCCcccccHHHHHHHHHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCC
Q 005661 484 MVAQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKE 551 (685)
Q Consensus 484 ~~~~~p~~~~~~~t~~~l~~~i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~ 551 (685)
|++++|.+ +.+++.+++.+|.+||||||||+++|++.. .++.||+.|||.+.
T Consensus 1933 ~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~n~It~yg~vEn 1984 (2281)
T CHL00206 1933 YKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEKNGITSYGLVEN 1984 (2281)
T ss_pred eEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhhcCcccccchhh
Confidence 99999876 799999999999999999999999998632 57899999999988
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-51 Score=451.59 Aligned_cols=245 Identities=43% Similarity=0.731 Sum_probs=236.9
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++|++|++.|.+ +++|+.|.++|..+|+|||||||||||||++||++|++++.+|+.+.+.++.++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 4789999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
|+|++++.++++|++|+..+|||||+||||++...|+........+++++||++|||+....+|+||++||+|+.||+||
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~AL 587 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPAL 587 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHH
Confidence 99999999999999999999999999999999999987666778999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC--CCccCHHHH
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG--AKAVTMADL 424 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~--~~~It~edl 424 (685)
+||||||+.|+||+||.+.|.+||+.++++....+++|+..||..|+||||+||.++|++|+..|.+++ ...|+.+||
T Consensus 588 lRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf 667 (693)
T KOG0730|consen 588 LRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHF 667 (693)
T ss_pred cCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999886 567999999
Q ss_pred HHHHHHHh
Q 005661 425 EYAKDKIM 432 (685)
Q Consensus 425 ~~A~~~v~ 432 (685)
++|+..+.
T Consensus 668 ~~al~~~r 675 (693)
T KOG0730|consen 668 EEALKAVR 675 (693)
T ss_pred HHHHHhhc
Confidence 99998763
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-51 Score=447.02 Aligned_cols=395 Identities=34% Similarity=0.493 Sum_probs=299.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
.++++|+||+|.|....+|.+++..+++|+.|..+|.++|+|||||||||||||+||+|+|+++++||+.+++.++++.+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC----CCEEEEEecCCcCcCc
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN----EGIIVIAATNFPESLD 343 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~----~~ViVIaaTN~p~~LD 343 (685)
.|++++++|++|+.|+..+|||+||||||+|+++|.....+--++++.+||..||++... .+|+||+|||+||.||
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999998866666778999999999998654 6799999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC------
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAK------ 417 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~------ 417 (685)
|+|+|+||||+.|.+..|+..+|.+||+..+++..++.++|+..||+.|+||.|+||..||.+|+..|.++--+
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875211
Q ss_pred --ccCHHH-----HHH--H-------------HHHHhc-ccccccccccchhh--hhhhHHHhhhHHHhh----hcCCCC
Q 005661 418 --AVTMAD-----LEY--A-------------KDKIMM-GSERKSAVISDESR--KLTAFHEGGHALVAV----HTDGAL 468 (685)
Q Consensus 418 --~It~ed-----l~~--A-------------~~~v~~-g~~~~~~~~s~~~~--~~~A~hEaGhA~va~----~~~~~~ 468 (685)
....+| +.. . +++++. +..+....+|.+.. -.+.+.+.-.|+-.. .-++..
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 000111 100 0 000000 00000111121111 111222222222110 011222
Q ss_pred ccceEEEeeCCCccceE-EecCCCCcccccHHHHHHHHHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcC
Q 005661 469 PVHKATIVPRGMSLGMV-AQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYG 547 (685)
Q Consensus 469 ~v~kvti~prg~~~G~~-~~~p~~~~~~~t~~~l~~~i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~G 547 (685)
.|..||+..-|. +-.+ -++...-.+...+.+++.++-+-. ....|+||+ ++-|. |.||++..-+-|
T Consensus 504 tVPdVtW~dIGa-L~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GP--PGCGK-------TLlAKAVANEag 570 (802)
T KOG0733|consen 504 TVPDVTWDDIGA-LEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGP--PGCGK-------TLLAKAVANEAG 570 (802)
T ss_pred ecCCCChhhccc-HHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCC--CCccH-------HHHHHHHhhhcc
Confidence 233333322221 0000 000000113345667777765543 345789998 34444 999999999999
Q ss_pred CCCCccceeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005661 548 MSKEVGVVTHNYDDNGKSMSTETRLLIEKEVRNFLDRAYNNAKTILTMHSKELHALAN 605 (685)
Q Consensus 548 ms~~~G~~~~~~~~~~~~~s~~~~~~id~eV~~ll~~a~~~a~~iL~~~~~~L~~lA~ 605 (685)
++ ++++. |.++-.++..+.|+.||.++++|...|.|++. .+++|+|+-
T Consensus 571 ~N----FisVK----GPELlNkYVGESErAVR~vFqRAR~saPCVIF--FDEiDaL~p 618 (802)
T KOG0733|consen 571 AN----FISVK----GPELLNKYVGESERAVRQVFQRARASAPCVIF--FDEIDALVP 618 (802)
T ss_pred Cc----eEeec----CHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEE--ecchhhcCc
Confidence 97 67664 56677778888899999999999999999997 888887654
No 11
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-51 Score=418.86 Aligned_cols=348 Identities=35% Similarity=0.533 Sum_probs=310.8
Q ss_pred HHHHHHHHHHHHHhcccchhHHHHHHhhccccccc-chhhccccccccccCCCc---------cCCccCCCCCCeEEEec
Q 005661 69 QSALSEYVKALVKVDRLDDSELLKTLQKGIANSAR-DEESIGGISAFKNVGKPT---------KDGVLGTASAPIHMVAA 138 (685)
Q Consensus 69 ~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~p~~~v~~ 138 (685)
..++..|.+.|..++..+. .++..+.......+ ..++++++++++++|+.+ ..+|++++++|+|+|.|
T Consensus 6 ~~al~~~r~~L~~~~~~~~--~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryvvg~ 83 (388)
T KOG0651|consen 6 NKALAEYRKPLLSHRSISS--ALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYVVGC 83 (388)
T ss_pred HHHHHHhhhhhhhccchhh--HHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcEEEEc
Confidence 4688999999999998886 56666655554333 478889999999999964 34899999999999999
Q ss_pred cCcccHHHHHHHHHHHH-HHHHHHHhhhhhhhccccccccCCccccC------CCCCCCCCCCcCCCcHHHHHHHHHHHH
Q 005661 139 EGGHFKEQLWRTIRTIA-LGFLLISGVGALIEDRGISKGLGLHEEVQ------PSLESNTKFSDVKGVDEAKQELEEIVH 211 (685)
Q Consensus 139 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~f~dV~G~de~k~~L~e~v~ 211 (685)
.....+.++..+.++.. ++.+.++.. ++.+++ .....+++|++|.|.-++..++++.++
T Consensus 84 ~~~~D~~~i~~G~rv~ldittltIm~~--------------lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ie 149 (388)
T KOG0651|consen 84 RRSVDKEKIARGTRVVLDITTLTIMRG--------------LPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIE 149 (388)
T ss_pred ccccchhhhccCceeeeeeeeeehhcc--------------cchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheE
Confidence 99999999999888643 555555431 122211 222457899999999999999999999
Q ss_pred H-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEE
Q 005661 212 Y-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCII 290 (685)
Q Consensus 212 ~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~IL 290 (685)
. +.+|+.|.++|+++|+|++||||||||||++|+++|..+|++|+.++.+.+.++|.|++++.+|+.|..|+.+.||||
T Consensus 150 lpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pcii 229 (388)
T KOG0651|consen 150 LPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCII 229 (388)
T ss_pred eeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEE
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHH
Q 005661 291 FIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRR 367 (685)
Q Consensus 291 fIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~ 367 (685)
||||||++++++.+. .+.+.++++.+|+++|++|.....|.+|+|||+|+.|||+|+||||+|+.+++|+|+...|.
T Consensus 230 fmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~ 309 (388)
T KOG0651|consen 230 FMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARL 309 (388)
T ss_pred eehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhce
Confidence 999999999988543 45778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005661 368 QIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 368 ~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~ 432 (685)
.|++.|...+.....+|.+.+.+..+||+|+|+++.|++|.++|.++.+..+-++|+..++.++-
T Consensus 310 ~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 310 GILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred eeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999999999999999988763
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-49 Score=392.67 Aligned_cols=306 Identities=35% Similarity=0.517 Sum_probs=267.2
Q ss_pred cCCccCCCCCCeEEEeccCcccHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccccCCCCCCCCCCCcCCCcHH
Q 005661 122 KDGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGLHEEVQPSLESNTKFSDVKGVDE 201 (685)
Q Consensus 122 ~~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dV~G~de 201 (685)
+.+|+|+..+..|||-.-+....+.+. .-.++++.-..-..+..+......+ ..-+.|...|++++.||+|+|-
T Consensus 89 nt~ivgsttgsny~vrilstidrellk-ps~svalhrhsnalvdvlppeadss-----i~ml~~~ekpdvsy~diggld~ 162 (408)
T KOG0727|consen 89 NTAIVGSTTGSNYYVRILSTIDRELLK-PSASVALHRHSNALVDVLPPEADSS-----ISMLGPDEKPDVSYADIGGLDV 162 (408)
T ss_pred cCceeecccCCceEEeehhhhhHHHcC-CccchhhhhcccceeeccCCccccc-----ccccCCCCCCCccccccccchh
Confidence 458999999999999887765555433 3333433222222222222111111 1123344568999999999999
Q ss_pred HHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHH
Q 005661 202 AKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFS 280 (685)
Q Consensus 202 ~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~ 280 (685)
+|+++++.++. |.+.+.|++.|+++|+|||||||||||||+||+|+|+.....|+.+.+++|..+|.|++.+.+|++|.
T Consensus 163 qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfr 242 (408)
T KOG0727|consen 163 QKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFR 242 (408)
T ss_pred hHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccc
Q 005661 281 AAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIV 357 (685)
Q Consensus 281 ~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~ 357 (685)
.|+.++|+||||||||++..+|.. +...+.++++.+||++||||.+..+|.||++||+.+.|||+|+||||+|+.|+
T Consensus 243 lakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkie 322 (408)
T KOG0727|consen 243 LAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 322 (408)
T ss_pred HHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCcccccccc
Confidence 999999999999999999988754 45677999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 005661 358 VPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 358 i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~ 433 (685)
||+||.++++-++.....++.+.+++|++.+..+.+..||+||..+|++|.+.|.+.++-.|...||++|....+-
T Consensus 323 fplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 323 FPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred CCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987753
No 13
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-50 Score=405.30 Aligned_cols=321 Identities=33% Similarity=0.516 Sum_probs=277.2
Q ss_pred cccccccccCCCc---------cCCccCCCCCCeEEEeccCcccHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCC
Q 005661 109 GGISAFKNVGKPT---------KDGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGL 179 (685)
Q Consensus 109 ~~~~~~~~~~~~~---------~~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (685)
..+..++..++++ ...|+.++.+|.|||..-+...+..+-.+|.+++ ..-....+|.+.++... +
T Consensus 97 ~~vd~lRGtPmsvg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll-~~k~~avvGvL~d~~dp-----m 170 (440)
T KOG0726|consen 97 SKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLL-NHKVHAVVGVLQDDTDP-----M 170 (440)
T ss_pred hHHHhhcCCccccccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeee-ccccceEEEEeccCCCc-----c
Confidence 3455666555442 4578999999999999988777776666654332 22222223333322110 1
Q ss_pred ccccCCCCCCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 180 HEEVQPSLESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 180 ~~~~~~~~~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
..-++-...|.-+|.||+|++.+++++++.|+. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+
T Consensus 171 v~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRv 250 (440)
T KOG0726|consen 171 VSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRV 250 (440)
T ss_pred ceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhh
Confidence 111122234677899999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred eccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCC---CCchHHHHHHHHHHHHHhhccccCCCEEEEEe
Q 005661 259 SGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRN---PKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA 335 (685)
Q Consensus 259 s~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~---~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 335 (685)
.++++..+|.|.+.+.+|++|+.|..++|+|+||||||+++.+|- ++...++++++.+||+++|||...+.|.||++
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimA 330 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 330 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEe
Confidence 999999999999999999999999999999999999999999884 45567899999999999999999999999999
Q ss_pred cCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005661 336 TNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 415 (685)
Q Consensus 336 TN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 415 (685)
||+.+.|||+|.||||+|+.|+||.||...++.||..|..++.+..+++++.+....+.+||+||..+|.+|.++|.|+.
T Consensus 331 Tnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer 410 (440)
T KOG0726|consen 331 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER 410 (440)
T ss_pred cccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHhccc
Q 005661 416 AKAVTMADLEYAKDKIMMGS 435 (685)
Q Consensus 416 ~~~It~edl~~A~~~v~~g~ 435 (685)
+..++++||..|.++++...
T Consensus 411 Rm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 411 RMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred HhhccHHHHHHHHHHHHHhc
Confidence 99999999999999998643
No 14
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-48 Score=426.38 Aligned_cols=246 Identities=41% Similarity=0.652 Sum_probs=233.1
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.|+++|+||+|+++++.+|...|.+ +++|+.|+++|+..|.|||||||||||||+||||+|++.|.+|+.|.+.++.++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 3799999999999999999988877 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
|+|++++.+|.+|+.|+..+|||||+||||+|.++|+........+++|+||++|||...+.+|.||++||+||.+|||+
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAi 664 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAI 664 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhh
Confidence 99999999999999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhh--hhcccCcccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHcC-------
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMS--KVLKADDVDLMIIARGTP--GFSGADLANLVNIAALKAAMDG------- 415 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~--~~~~~~~vdl~~la~~t~--G~sgadI~~lv~~A~~~A~~~~------- 415 (685)
+||||||+.+++++|+.++|.+||+.+.+ +..++.++|++.|++.+. ||||+||..||++|.+.|.++.
T Consensus 665 LRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~ 744 (802)
T KOG0733|consen 665 LRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSS 744 (802)
T ss_pred cCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999 677889999999999876 9999999999999999998741
Q ss_pred ---------CCccCHHHHHHHHHHHhc
Q 005661 416 ---------AKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 416 ---------~~~It~edl~~A~~~v~~ 433 (685)
...++..||++|+.++.+
T Consensus 745 ~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 745 EDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred CcccceeeeeeeecHHHHHHHHHhcCC
Confidence 113678899999998855
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-49 Score=392.80 Aligned_cols=261 Identities=41% Similarity=0.665 Sum_probs=246.8
Q ss_pred cCCccccCCCC-------CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHH
Q 005661 177 LGLHEEVQPSL-------ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIA 248 (685)
Q Consensus 177 ~~~~~~~~~~~-------~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA 248 (685)
+.++..++|++ .++++++||+|+.++++.|+++|+. +.+|++|-.+|+++|+|||||||||||||++|||+|
T Consensus 153 lplppkidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~arava 232 (435)
T KOG0729|consen 153 LPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVA 232 (435)
T ss_pred ccCCCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHh
Confidence 34555555554 4889999999999999999999999 999999999999999999999999999999999999
Q ss_pred HhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccc
Q 005661 249 GEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFK 325 (685)
Q Consensus 249 ~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~ 325 (685)
+..+..|+.+-+|+++.+|+|++++.+|++|+.|+...-||||+||||++++.|.. ++..+.++++.+|+++||||.
T Consensus 233 nrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfd 312 (435)
T KOG0729|consen 233 NRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD 312 (435)
T ss_pred cccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999998854 356789999999999999999
Q ss_pred cCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHH
Q 005661 326 QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 405 (685)
Q Consensus 326 ~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~ 405 (685)
..+++.|+++||+|+.|||+|+||||+|+.++|.+||.++|..||+.|.+.+....++-++.|+++++..+|++|+.+|.
T Consensus 313 prgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvct 392 (435)
T KOG0729|consen 313 PRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCT 392 (435)
T ss_pred CCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHhccccc
Q 005661 406 IAALKAAMDGAKAVTMADLEYAKDKIMMGSER 437 (685)
Q Consensus 406 ~A~~~A~~~~~~~It~edl~~A~~~v~~g~~~ 437 (685)
+|.++|.+..++..|..||-+|+++++.|-.+
T Consensus 393 eagmfairarrk~atekdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 393 EAGMFAIRARRKVATEKDFLDAVNKVVKGYAK 424 (435)
T ss_pred HhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887654
No 16
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-47 Score=379.92 Aligned_cols=246 Identities=41% Similarity=0.656 Sum_probs=237.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.|+.+++-|+|+|.++++++++++. .++|+.|..+|+..|+|+|||||||||||+||+++|+...+.|+.++++++..+
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 3677899999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
|.|++.+.+|++|-.|+.++|+|||+||||.++..|.. +++.+.++++.+||+++|||....++.||++||+.+.||
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild 300 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 300 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccccc
Confidence 99999999999999999999999999999999988754 356789999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 423 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 423 (685)
|+|+||||+|+.|+||+|+.+.|.+||+.|.++..+...+|+..+|....|.||+++..+|.+|.++|.++.+-.+|++|
T Consensus 301 ~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqed 380 (404)
T KOG0728|consen 301 PALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQED 380 (404)
T ss_pred HhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 005661 424 LEYAKDKIMM 433 (685)
Q Consensus 424 l~~A~~~v~~ 433 (685)
|+-|..+++.
T Consensus 381 femav~kvm~ 390 (404)
T KOG0728|consen 381 FEMAVAKVMQ 390 (404)
T ss_pred HHHHHHHHHh
Confidence 9999999876
No 17
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-46 Score=370.63 Aligned_cols=246 Identities=40% Similarity=0.644 Sum_probs=235.7
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.|+-+++||+|++.++++|.+.+-. +.++++|..+|+++|+|+|+|||||||||++|||.|...+..|+.+-+..++.+
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 4677899999999999999887766 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
|+|.+++.+|+.|..|+..+|+||||||+|+++.+|... +..+.++++.+||+++|||..+..|.||++||+.+.||
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLD 324 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILD 324 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccC
Confidence 999999999999999999999999999999999998654 45678999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 423 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 423 (685)
|+|+|.||+|+.|+||.|+.+.|..|++.|.+++....+++++.+++.|++|+|++...+|-+|.+.|.|++...|+.+|
T Consensus 325 PALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heD 404 (424)
T KOG0652|consen 325 PALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHED 404 (424)
T ss_pred HHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 005661 424 LEYAKDKIMM 433 (685)
Q Consensus 424 l~~A~~~v~~ 433 (685)
|.+++-.+..
T Consensus 405 fmegI~eVqa 414 (424)
T KOG0652|consen 405 FMEGILEVQA 414 (424)
T ss_pred HHHHHHHHHH
Confidence 9999887753
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=395.21 Aligned_cols=306 Identities=34% Similarity=0.496 Sum_probs=258.6
Q ss_pred cCCccCCCCCCeEEEeccCcccHHHHHHHHHHHHH-HHHHHHhhhhhhhccccccccCCccccCCCCCCCCCCCcCCCcH
Q 005661 122 KDGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIAL-GFLLISGVGALIEDRGISKGLGLHEEVQPSLESNTKFSDVKGVD 200 (685)
Q Consensus 122 ~~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dV~G~d 200 (685)
+.+|++++.+|.++|.+.+......+..+.++..- ....+ +..+.... . .....+.....|+++|+||+|++
T Consensus 79 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~----~-~~~~~~~~~~~p~v~~~digGl~ 151 (398)
T PTZ00454 79 NYGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAV--VDILPPEA----D-SSIQLLQMSEKPDVTYSDIGGLD 151 (398)
T ss_pred CEEEEEcCCCCEEEEecccccCHhhCCCCCEEEeeccchhH--HHhccccc----c-chhhhhcccCCCCCCHHHcCCHH
Confidence 35789999999999987776555554444332100 00000 00000000 0 00011112235789999999999
Q ss_pred HHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHH
Q 005661 201 EAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLF 279 (685)
Q Consensus 201 e~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF 279 (685)
.+|+++++.+.+ +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++..+|.|.+...++.+|
T Consensus 152 ~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf 231 (398)
T PTZ00454 152 IQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVF 231 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHH
Confidence 999999999986 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCccccc
Q 005661 280 SAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHI 356 (685)
Q Consensus 280 ~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I 356 (685)
..++..+||||||||+|.++.++.. .......+.+.+++..++++....+++||++||+++.||++++||||||++|
T Consensus 232 ~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I 311 (398)
T PTZ00454 232 RLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKI 311 (398)
T ss_pred HHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEE
Confidence 9999999999999999999877632 2334577889999999999988889999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcc
Q 005661 357 VVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMG 434 (685)
Q Consensus 357 ~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g 434 (685)
+|++|+.++|.+||+.++.+.....++|+..++..|+||||+||.++|++|++.|.++++..|+++||.+|+++++.+
T Consensus 312 ~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 312 EFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred EeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 999999999999999999998888899999999999999999999999999999999999999999999999998654
No 19
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=1.7e-44 Score=365.35 Aligned_cols=202 Identities=49% Similarity=0.740 Sum_probs=179.0
Q ss_pred CHHHHHHHHHHHhcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCccceEEecCCCCcccccHH
Q 005661 420 TMADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRK 499 (685)
Q Consensus 420 t~edl~~A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~ 499 (685)
|++||++|+++++.|.+++...+++++++++||||||||||++++++..+|.+|||+|||.++||+.+.|.++.+..||.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 68999999999999999877788999999999999999999999998899999999999999999999999888889999
Q ss_pred HHHHHHHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCC-----------CCCCCH
Q 005661 500 QMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDN-----------GKSMST 568 (685)
Q Consensus 500 ~l~~~i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~-----------~~~~s~ 568 (685)
+|+++|+|||||||||+++||.+++|+|+++||++||.+|+.||.+||||+++|++++...++ ...+|+
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 160 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSE 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-H
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcch
Confidence 999999999999999999999888999999999999999999999999999999998764333 125889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCHHHHHHH
Q 005661 569 ETRLLIEKEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKAL 621 (685)
Q Consensus 569 ~~~~~id~eV~~ll~~a~~~a~~iL~~~~~~L~~lA~~Lle~etL~~~ei~~i 621 (685)
.++..+++||+++|+++|++|++||.+|++.|++||++|+++++|+++||++|
T Consensus 161 ~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 161 ETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999986
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=9.7e-44 Score=355.66 Aligned_cols=240 Identities=42% Similarity=0.629 Sum_probs=225.2
Q ss_pred CCCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 187 LESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 187 ~~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
..++++|+||+|++++|+.++-++++|.||++|..+ -|++||||||||||||++||++|+++++||+.+...++...
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 357899999999999999999999999999998654 58899999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC-chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCccc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK-DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA 345 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a 345 (685)
++|.++++++++|+.|++.+|||+||||+|+|+-+|... .......++|.||++|||...+.+|+.|++||+|+.||++
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~a 270 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPA 270 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHH
Confidence 999999999999999999999999999999998766432 2344678899999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHH-HHHHHHHHHHHHcCCCccCHHHH
Q 005661 346 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLA-NLVNIAALKAAMDGAKAVTMADL 424 (685)
Q Consensus 346 LlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~-~lv~~A~~~A~~~~~~~It~edl 424 (685)
+++ ||...|+|.+|+.++|.+|++.++++..+.-+.++..++..|.|+||+||. .++..|...|..+++..|+.+|+
T Consensus 271 iRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edi 348 (368)
T COG1223 271 IRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDI 348 (368)
T ss_pred HHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHH
Confidence 998 999999999999999999999999999998899999999999999999998 78889999999999999999999
Q ss_pred HHHHHHH
Q 005661 425 EYAKDKI 431 (685)
Q Consensus 425 ~~A~~~v 431 (685)
++|+.+.
T Consensus 349 e~al~k~ 355 (368)
T COG1223 349 EKALKKE 355 (368)
T ss_pred HHHHHhh
Confidence 9999974
No 21
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-43 Score=365.40 Aligned_cols=243 Identities=38% Similarity=0.587 Sum_probs=223.2
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||.|+.++|+-|+|.|-. +.-|+.|+. ..++-||||++||||||||+||||+|.|++..||.|+.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 5789999999999999999998877 888887763 45667899999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC-CchHHHHHHHHHHHHHhhccccC-CC---EEEEEecCCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP-KDQQYMKMTLNQLLVELDGFKQN-EG---IIVIAATNFPES 341 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~-~~~~~~~~~l~~LL~~ld~~~~~-~~---ViVIaaTN~p~~ 341 (685)
|.|++++.+|-+|+.|+.++|++|||||||+|+.+|.. .+++...++.++||.+|||.... .+ |+|+++||.|+.
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWd 364 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWD 364 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcc
Confidence 99999999999999999999999999999999998865 56777889999999999997553 33 899999999999
Q ss_pred CcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC------
Q 005661 342 LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG------ 415 (685)
Q Consensus 342 LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~------ 415 (685)
||+||+| ||.+.|+||+||.++|..+|+..++.....++++++.|+..++||||+||.++|++|.+++.|+.
T Consensus 365 iDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 365 IDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred hHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999998841
Q ss_pred -----------CCccCHHHHHHHHHHHhc
Q 005661 416 -----------AKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 416 -----------~~~It~edl~~A~~~v~~ 433 (685)
...|+++||+.|+.++-+
T Consensus 443 ~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 443 REIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 134889999999998754
No 22
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-42 Score=386.98 Aligned_cols=245 Identities=38% Similarity=0.654 Sum_probs=224.3
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
-|+++|+||+|.+++|.++.+.+.. |++|+.|.. |.+...|||||||||||||++|||+|.++...|+.|.+.++.++
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 4799999999999999999999998 999998874 77778899999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc--hHHHHHHHHHHHHHhhccc--cCCCEEEEEecCCcCcC
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD--QQYMKMTLNQLLVELDGFK--QNEGIIVIAATNFPESL 342 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~--~~~~~~~l~~LL~~ld~~~--~~~~ViVIaaTN~p~~L 342 (685)
|+|+++.++|++|++||..+|||||+||+|.+.++|...+ ..-+.+++.|||.+|||.. ...+|+||+|||+||.|
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL 824 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL 824 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcccc
Confidence 9999999999999999999999999999999999886543 3578999999999999998 46789999999999999
Q ss_pred cccccCCCCcccccccCCC-CHHHHHHHHHHHhhhhcccCcccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHcC-----
Q 005661 343 DKALVRPGRFDRHIVVPNP-DVEGRRQIMESHMSKVLKADDVDLMIIARGTP-GFSGADLANLVNIAALKAAMDG----- 415 (685)
Q Consensus 343 D~aLlRpgRFd~~I~i~~P-d~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~-G~sgadI~~lv~~A~~~A~~~~----- 415 (685)
||+|+||||||+.+++.++ |.+.+..||+...++..++.++|+..||+.++ .|||||+..+|..|.+.|.++.
T Consensus 825 DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie 904 (953)
T KOG0736|consen 825 DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIE 904 (953)
T ss_pred ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999776 56777889999999999999999999998864 7999999999999999998641
Q ss_pred ------------CCccCHHHHHHHHHHHhc
Q 005661 416 ------------AKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 416 ------------~~~It~edl~~A~~~v~~ 433 (685)
.-.|+++||-++.++..+
T Consensus 905 ~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 905 SGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred hccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 115899999999998755
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=381.51 Aligned_cols=307 Identities=38% Similarity=0.560 Sum_probs=258.9
Q ss_pred cCCccCCCCCCeEEEeccCcccHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccccCCCCCCCCCCCcCCCcHH
Q 005661 122 KDGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGLHEEVQPSLESNTKFSDVKGVDE 201 (685)
Q Consensus 122 ~~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dV~G~de 201 (685)
+..|+.++.+|.|+|.+.+......+-.+..+.+-. -....++.+..... .+...+.....+.++|+||+|+++
T Consensus 117 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~-~~~~~~~~~~~~~d-----~~~~~~~~~~~p~~~~~DIgGl~~ 190 (438)
T PTZ00361 117 NHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHN-KTHSVVGILLDEVD-----PLVSVMKVDKAPLESYADIGGLEQ 190 (438)
T ss_pred CeEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcC-CCCceEecCccccc-----hhhhhcccccCCCCCHHHhcCHHH
Confidence 347888999999999887766665555443321100 00000111100000 000111122346789999999999
Q ss_pred HHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHH
Q 005661 202 AKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFS 280 (685)
Q Consensus 202 ~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~ 280 (685)
+++++++.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...|.|.+...++.+|.
T Consensus 191 qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~ 270 (438)
T PTZ00361 191 QIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFR 270 (438)
T ss_pred HHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHH
Confidence 99999999987 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccc
Q 005661 281 AAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIV 357 (685)
Q Consensus 281 ~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~ 357 (685)
.|+.+.||||||||||.++.++.. .......+++.++|..++++....++.||++||+++.||++++||||||++|+
T Consensus 271 ~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~ 350 (438)
T PTZ00361 271 VAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIE 350 (438)
T ss_pred HHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEE
Confidence 999999999999999999987643 23455678889999999999888899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcc
Q 005661 358 VPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMG 434 (685)
Q Consensus 358 i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g 434 (685)
|++||.++|.+||+.|+.+.....++|+..++..+.||||+||.++|++|++.|.++++..|+.+||..|+++++..
T Consensus 351 ~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 351 FPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred eCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999998653
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=9.2e-41 Score=366.73 Aligned_cols=250 Identities=46% Similarity=0.705 Sum_probs=234.3
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++++++++.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 4688999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
|.|.+...++.+|..++...||||||||+|.++.++... ......+.+.+++.+++++....+++||+|||+++.+|
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld 284 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILD 284 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCC
Confidence 999999999999999999999999999999998776532 23456788999999999998888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 423 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 423 (685)
++++||||||+.|+||+|+.++|.+||+.++++.....++++..++..|.||+|+||+++|++|++.|.++++..|+.+|
T Consensus 285 ~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d 364 (389)
T PRK03992 285 PAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMED 364 (389)
T ss_pred HHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccc
Q 005661 424 LEYAKDKIMMGSER 437 (685)
Q Consensus 424 l~~A~~~v~~g~~~ 437 (685)
|.+|++++..+...
T Consensus 365 ~~~A~~~~~~~~~~ 378 (389)
T PRK03992 365 FLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHHHHHhccccc
Confidence 99999999765443
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=368.05 Aligned_cols=246 Identities=47% Similarity=0.744 Sum_probs=233.2
Q ss_pred CCCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh
Q 005661 187 LESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 265 (685)
Q Consensus 187 ~~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~ 265 (685)
..+.++|+|++|.+++|+++++.+.+ ++.++.|...+..+|+|+|||||||||||++|+++|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 35789999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCccc
Q 005661 266 MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA 345 (685)
Q Consensus 266 ~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a 345 (685)
+|+|+++++++.+|..|+..+||||||||+|++...|.........++++++|.+|++.....+|+||++||+|+.+|++
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a 394 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHh
Confidence 99999999999999999999999999999999999998777666689999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhc--ccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC-CCccCHH
Q 005661 346 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL--KADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG-AKAVTMA 422 (685)
Q Consensus 346 LlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~--~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~-~~~It~e 422 (685)
++||||||+.++||+||.++|.+||+.|+++.. ...++|+..+++.|+||+|+||..+|++|.+.+.++. ...|+++
T Consensus 395 ~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~ 474 (494)
T COG0464 395 LLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLD 474 (494)
T ss_pred hcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHH
Confidence 999999999999999999999999999998543 3578999999999999999999999999999999988 7889999
Q ss_pred HHHHHHHHHh
Q 005661 423 DLEYAKDKIM 432 (685)
Q Consensus 423 dl~~A~~~v~ 432 (685)
||..|+.++.
T Consensus 475 ~~~~a~~~~~ 484 (494)
T COG0464 475 DFLDALKKIK 484 (494)
T ss_pred HHHHHHHhcC
Confidence 9999998843
No 26
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-39 Score=356.67 Aligned_cols=228 Identities=39% Similarity=0.671 Sum_probs=218.4
Q ss_pred CCCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh
Q 005661 187 LESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 265 (685)
Q Consensus 187 ~~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~ 265 (685)
...+++|+||+|+.++|+.|++++++ -+.|..|...+.+.+.|||||||||||||+||.++|..++..|+.+.+.++..
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 34568999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCccc
Q 005661 266 MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA 345 (685)
Q Consensus 266 ~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a 345 (685)
+|.|.++.++|++|..|+..+|||||+||+|.+.++|.-....-..+++|+||++|||...-.+|.|+++|.+|+.||||
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpA 819 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPA 819 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHh
Confidence 99999999999999999999999999999999999998776677889999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005661 346 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 414 (685)
Q Consensus 346 LlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 414 (685)
|+||||+|+.++-|.|+..+|.+|++........+.++|++.+|..|+||||+||..++..|.+.|..+
T Consensus 820 LLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 820 LLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888999999999999999999999999999999888653
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-39 Score=338.38 Aligned_cols=225 Identities=42% Similarity=0.665 Sum_probs=213.1
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhC-CCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLG-GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 265 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g-~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~ 265 (685)
+..++|+||+|++++++.|++.|-. ++.|+.|...+ ..+|+||||+||||||||++|+++|+++|.+|+.++.+.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 5688999999999999999999988 99999996332 357899999999999999999999999999999999999999
Q ss_pred hHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCC--EEEEEecCCcCcCc
Q 005661 266 MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEG--IIVIAATNFPESLD 343 (685)
Q Consensus 266 ~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~--ViVIaaTN~p~~LD 343 (685)
+|.|++.+.++.+|..|.+.+||||||||+|.+.+.|.+.+++.....-++++...||+..+.+ |+|++|||+|..||
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlD 245 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLD 245 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHH
Confidence 9999999999999999999999999999999999999888999999999999999999988766 99999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 414 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 414 (685)
.|++| |+.+.++|+.|+.++|.+||+..+++...++++|+..+|..|.||||.||.++|+.|+....++
T Consensus 246 eAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 246 EAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred HHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999 9999999999999999999999999999999999999999999999999999999999887653
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.1e-39 Score=377.43 Aligned_cols=245 Identities=43% Similarity=0.715 Sum_probs=228.6
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
++++|+||+|++.+|++|++.+.+ +++++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++..+|
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 578999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc-hHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD-QQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~-~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
+|++++.++.+|..|+...||||||||||.++..|.... .....+.+++||.+||++....+++||+|||+|+.||+++
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~al 607 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPAL 607 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhh
Confidence 999999999999999999999999999999998776442 3446788999999999998889999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC-----------
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG----------- 415 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~----------- 415 (685)
+||||||++|++|+||.++|.+||+.++++.....++|+..+|..|.||||+||.++|++|++.|.++.
T Consensus 608 lRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~ 687 (733)
T TIGR01243 608 LRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV 687 (733)
T ss_pred cCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc
Confidence 999999999999999999999999999999888889999999999999999999999999999988742
Q ss_pred -------CCccCHHHHHHHHHHHhc
Q 005661 416 -------AKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 416 -------~~~It~edl~~A~~~v~~ 433 (685)
...|+++||..|+.++.+
T Consensus 688 ~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 688 GEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred ccccccccCcccHHHHHHHHHHcCC
Confidence 126999999999988643
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.7e-38 Score=355.33 Aligned_cols=241 Identities=28% Similarity=0.425 Sum_probs=216.1
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
.++++|+||+|++.+|+++++....+ +..+...|...|+|+|||||||||||++|+++|++++.||+.++++.+..+|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 46789999999999999999866543 2345677999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC-CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP-KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~-~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
+|+++.+++.+|..++..+||||||||||.++..+.. .+.....++++.++..|+. ...+|+||+|||+++.||+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999875433 3455677889999998884 456899999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhccc--CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA--DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 424 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~--~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 424 (685)
+|+||||++++|++|+.++|.+||+.|+++.... .+.|+..++..|.||||+||+++|++|...|..++ +.++.+||
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl 456 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDI 456 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHH
Confidence 9999999999999999999999999999886433 47889999999999999999999999999998766 56899999
Q ss_pred HHHHHHHhc
Q 005661 425 EYAKDKIMM 433 (685)
Q Consensus 425 ~~A~~~v~~ 433 (685)
..|+.++.+
T Consensus 457 ~~a~~~~~P 465 (489)
T CHL00195 457 LLALKQFIP 465 (489)
T ss_pred HHHHHhcCC
Confidence 999998865
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=6.6e-38 Score=341.69 Aligned_cols=244 Identities=48% Similarity=0.731 Sum_probs=228.5
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++++++++.+.. +.+++.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++...
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 4788999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
|.|.+...++.+|..++...|+||||||+|.++.++... .....++.+.+++.+++++...+++.||+|||+++.+|
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld 275 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILD 275 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCC
Confidence 999999999999999999999999999999998766432 23456778899999999988888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 423 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 423 (685)
++++||||||+.|+|+.|+.++|.+||+.++.+.....++++..++..+.||+|+||.++|++|++.|.++++..|+.+|
T Consensus 276 ~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d 355 (364)
T TIGR01242 276 PALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDD 355 (364)
T ss_pred hhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Confidence 99999999999999999999999999999998887777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 005661 424 LEYAKDKI 431 (685)
Q Consensus 424 l~~A~~~v 431 (685)
|..|++++
T Consensus 356 ~~~a~~~~ 363 (364)
T TIGR01242 356 FIKAVEKV 363 (364)
T ss_pred HHHHHHHh
Confidence 99999876
No 31
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-39 Score=328.72 Aligned_cols=223 Identities=38% Similarity=0.661 Sum_probs=206.3
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.|+++|+||.|++.+|+.|+|.|-. ++.|+.|.. +.++-+|+||||||||||+.||+|+|.+++..||.++.+++.++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 5789999999999999999998887 888888763 44566899999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCCEEEEEecCCcCcCccc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDKA 345 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~-~~~~ViVIaaTN~p~~LD~a 345 (685)
|.|++++.++.+|+.|+.+.|+||||||||.+++.|+.+..+..+++..+||.+|.|.- .+++|+|+++||-|+.||.+
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999974 45789999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005661 346 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAM 413 (685)
Q Consensus 346 LlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~ 413 (685)
++| ||++.|+||+|+...|..+++.|+.+.... .+-|+..|++.|+||||+||.-+|+.|.+.-.|
T Consensus 286 IRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvR 352 (439)
T KOG0739|consen 286 IRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVR 352 (439)
T ss_pred HHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHH
Confidence 999 999999999999999999999999876432 456899999999999999999999988876655
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-38 Score=351.46 Aligned_cols=355 Identities=35% Similarity=0.498 Sum_probs=290.3
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
+.+. .+++|+..+...+++++.+ +.++..|...|.++|+|+|+|||||||||.+++++|++.++.++.+++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4566 7999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCC-CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 268 VGVGARRVRDLFSAAKKRS-PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
.|+++.++|..|+.+.+++ |+||||||||+++++|..... ...++..+|+..||+.....+++||++||+|+.||+++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~al 337 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPAL 337 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhh
Confidence 9999999999999999999 999999999999998866555 56788999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEY 426 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~ 426 (685)
+| ||||+.+++..|+..+|.+|++.+.+++...+++++..++..|.||.|+||..+|++|.+.+.++ ++++|..
T Consensus 338 RR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~ 411 (693)
T KOG0730|consen 338 RR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQE 411 (693)
T ss_pred hc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHH
Confidence 99 99999999999999999999999999998888899999999999999999999999999999887 8999999
Q ss_pred HHHHHhcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCc------cceEEecCCCCcccccHHH
Q 005661 427 AKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMS------LGMVAQLPDKDETSISRKQ 500 (685)
Q Consensus 427 A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~------~G~~~~~p~~~~~~~t~~~ 500 (685)
|...+.+...+... .++.+|++..-|+- +-.+-..| ..-.+
T Consensus 412 A~~~i~psa~Re~~---------------------------ve~p~v~W~dIGGlE~lK~elq~~V~~p------~~~pe 458 (693)
T KOG0730|consen 412 ALMGIRPSALREIL---------------------------VEMPNVSWDDIGGLEELKRELQQAVEWP------LKHPE 458 (693)
T ss_pred HHhcCCchhhhhee---------------------------ccCCCCChhhccCHHHHHHHHHHHHhhh------hhchH
Confidence 98777654433211 11111222111100 00000000 01112
Q ss_pred HHHHHHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCHHHHHHHHHHHHH
Q 005661 501 MLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDNGKSMSTETRLLIEKEVRN 580 (685)
Q Consensus 501 l~~~i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~~~~~s~~~~~~id~eV~~ 580 (685)
-+.++-+- +....|+||+ ++.|. |.+|++..++.||+ +++.. |..+-.++-..-|+.+++
T Consensus 459 ~F~r~Gi~---ppkGVLlyGP--PGC~K-------T~lAkalAne~~~n----Flsvk----gpEL~sk~vGeSEr~ir~ 518 (693)
T KOG0730|consen 459 KFARFGIS---PPKGVLLYGP--PGCGK-------TLLAKALANEAGMN----FLSVK----GPELFSKYVGESERAIRE 518 (693)
T ss_pred HHHHhcCC---CCceEEEECC--CCcch-------HHHHHHHhhhhcCC----eeecc----CHHHHHHhcCchHHHHHH
Confidence 22222211 3344688998 34444 99999999999997 55553 333434445566899999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005661 581 FLDRAYNNAKTILTMHSKELHALANA 606 (685)
Q Consensus 581 ll~~a~~~a~~iL~~~~~~L~~lA~~ 606 (685)
++++|.+-|.+||. .+++|.++..
T Consensus 519 iF~kAR~~aP~IiF--fDEiDsi~~~ 542 (693)
T KOG0730|consen 519 VFRKARQVAPCIIF--FDEIDALAGS 542 (693)
T ss_pred HHHHHhhcCCeEEe--hhhHHhHhhc
Confidence 99999999999998 8999988865
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2e-35 Score=330.47 Aligned_cols=250 Identities=31% Similarity=0.496 Sum_probs=211.4
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC----------EE
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP----------FF 256 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~----------fi 256 (685)
.++++|+||+|++++++++++.+.. +.+++.|...|..+|+|+|||||||||||++|+++|++++.+ |+
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 4689999999999999999999887 899999999999999999999999999999999999998654 66
Q ss_pred EeeccchhhhHhhhhhHHHHHHHHHHHhC----CCeEEEEcCchhhcCCCCCCc-hHHHHHHHHHHHHHhhccccCCCEE
Q 005661 257 SCSGSEFEEMFVGVGARRVRDLFSAAKKR----SPCIIFIDEIDAIGGSRNPKD-QQYMKMTLNQLLVELDGFKQNEGII 331 (685)
Q Consensus 257 ~vs~s~l~~~~~g~~~~~ir~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~-~~~~~~~l~~LL~~ld~~~~~~~Vi 331 (685)
.++++++..+|+|++++.++.+|+.++.. .||||||||+|.++.+|.... .+....++++||..||++...++++
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~Vi 335 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVI 335 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceE
Confidence 77788888899999999999999998764 699999999999998776532 3334567899999999999888999
Q ss_pred EEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhh-ccc---------CcccHHHHH------------
Q 005661 332 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV-LKA---------DDVDLMIIA------------ 389 (685)
Q Consensus 332 VIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~-~~~---------~~vdl~~la------------ 389 (685)
||+|||+++.||++++||||||++|+|++|+.++|.+||+.|+... ... ...++..++
T Consensus 336 VI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~ 415 (512)
T TIGR03689 336 VIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSE 415 (512)
T ss_pred EEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999998753 110 011111111
Q ss_pred -----------------hcCCCCCHHHHHHHHHHHHHHHHHc----CCCccCHHHHHHHHHHHhccccc
Q 005661 390 -----------------RGTPGFSGADLANLVNIAALKAAMD----GAKAVTMADLEYAKDKIMMGSER 437 (685)
Q Consensus 390 -----------------~~t~G~sgadI~~lv~~A~~~A~~~----~~~~It~edl~~A~~~v~~g~~~ 437 (685)
..++.+||++|.++|.+|...|..+ +...|+.+|+..|+..-+.-.+.
T Consensus 416 ~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~ 484 (512)
T TIGR03689 416 ENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESED 484 (512)
T ss_pred ccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhccccc
Confidence 1256789999999999999888865 35689999999999876654433
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.3e-35 Score=350.28 Aligned_cols=246 Identities=44% Similarity=0.669 Sum_probs=222.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++++.+++++.. +++|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+++.++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3678999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
|.|.....++.+|+.+....|+||||||||.+..++.........+++++|+..|+++.....++||++||+++.+|+++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al 331 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPAL 331 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHH
Confidence 99999999999999999999999999999999988765544445678899999999998888999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC-----------
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG----------- 415 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~----------- 415 (685)
+|+|||++.+.++.|+.++|.+||+.+.+......++++..++..+.||+++||..+|++|+..+.++.
T Consensus 332 ~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~ 411 (733)
T TIGR01243 332 RRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAE 411 (733)
T ss_pred hCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 999999999999999999999999999988877788999999999999999999999999998876541
Q ss_pred --------CCccCHHHHHHHHHHHhc
Q 005661 416 --------AKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 416 --------~~~It~edl~~A~~~v~~ 433 (685)
...++.+||..|+..+.+
T Consensus 412 ~i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 412 EIPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred cccchhcccccccHHHHHHHHhhccc
Confidence 124667777777765543
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=303.29 Aligned_cols=248 Identities=34% Similarity=0.492 Sum_probs=213.2
Q ss_pred CCCCCCCCc--CCCcHHHHHHH--HHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC-CCEEEeecc
Q 005661 187 LESNTKFSD--VKGVDEAKQEL--EEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-VPFFSCSGS 261 (685)
Q Consensus 187 ~~~~~~f~d--V~G~de~k~~L--~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~-~~fi~vs~s 261 (685)
..|+-.|++ |+|++.--..+ +.+...+--|+...++|++.-||+|||||||||||++||-|.+-++ .+--.+++.
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 356777887 57887665555 2344446778888999999999999999999999999999999886 456778999
Q ss_pred chhhhHhhhhhHHHHHHHHHHHhC--------CCeEEEEcCchhhcCCCCCCc--hHHHHHHHHHHHHHhhccccCCCEE
Q 005661 262 EFEEMFVGVGARRVRDLFSAAKKR--------SPCIIFIDEIDAIGGSRNPKD--QQYMKMTLNQLLVELDGFKQNEGII 331 (685)
Q Consensus 262 ~l~~~~~g~~~~~ir~lF~~A~~~--------~P~ILfIDEID~l~~~r~~~~--~~~~~~~l~~LL~~ld~~~~~~~Vi 331 (685)
++.++|+|+++.++|.+|..|... .-.||++||||+++.+|.+.. ......++||||..|||..+-++|+
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEE
Confidence 999999999999999999988431 225999999999999887642 3456788999999999999999999
Q ss_pred EEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhh----cccCcccHHHHHhcCCCCCHHHHHHHHHHH
Q 005661 332 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV----LKADDVDLMIIARGTPGFSGADLANLVNIA 407 (685)
Q Consensus 332 VIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~----~~~~~vdl~~la~~t~G~sgadI~~lv~~A 407 (685)
||+-||+.|.||+||+|||||..++++.+||+.+|.+|++.|.+++ .+..++|+..||.+|..|||++|+.+|+.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999765 456899999999999999999999999999
Q ss_pred HHHHHHcC---------------CCccCHHHHHHHHHHHhcc
Q 005661 408 ALKAAMDG---------------AKAVTMADLEYAKDKIMMG 434 (685)
Q Consensus 408 ~~~A~~~~---------------~~~It~edl~~A~~~v~~g 434 (685)
.-.|..+. .-.|+++||..|++.+.+.
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 88886541 1258999999999977553
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-33 Score=324.68 Aligned_cols=253 Identities=38% Similarity=0.589 Sum_probs=228.1
Q ss_pred CCCCCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEe
Q 005661 185 PSLESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSC 258 (685)
Q Consensus 185 ~~~~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~v 258 (685)
+.....+.|++|+|++.++..|+|+|-+ |..|+.|..+++.+|+||||+||||||||+.|+++|..+ .+.|+.-
T Consensus 256 ~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmr 335 (1080)
T KOG0732|consen 256 LSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMR 335 (1080)
T ss_pred hhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhh
Confidence 3346789999999999999999999998 999999999999999999999999999999999999887 4678888
Q ss_pred eccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 259 SGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 259 s~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
.+.+..++|+|+.++.++.+|+.|+...|+|||+||||-+.+.|+....+....++..||..|||....+.|+||+|||+
T Consensus 336 kgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 336 KGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred cCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 89999999999999999999999999999999999999999999887777778889999999999999999999999999
Q ss_pred cCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC-
Q 005661 339 PESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGADLANLVNIAALKAAMDGA- 416 (685)
Q Consensus 339 p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~- 416 (685)
|+.+||+|+||||||+.++||+|+.+.|.+|+..|-.+...... .-+..++..|.||.|+||+.+|.+|++.+.++.-
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 99999999999999999999999999999999999987653222 2256799999999999999999999999987531
Q ss_pred ---------------CccCHHHHHHHHHHHhccccc
Q 005661 417 ---------------KAVTMADLEYAKDKIMMGSER 437 (685)
Q Consensus 417 ---------------~~It~edl~~A~~~v~~g~~~ 437 (685)
..|...||-.|..++.+...+
T Consensus 496 q~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 496 QIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred eeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 247788888888888776555
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=2.5e-32 Score=289.62 Aligned_cols=261 Identities=18% Similarity=0.219 Sum_probs=195.8
Q ss_pred CCCCCCcC-CCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 189 SNTKFSDV-KGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 189 ~~~~f~dV-~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
...+|+++ .|+--.+..+..++-. -++- ....+.++|++++||||||||||++|+++|+++|++|+.+++.++.++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34578888 6666666666555432 1221 123678999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHh-----CCCeEEEEcCchhhcCCCCCCchHHHHHHH-HHHHHHhhcc------------ccCC
Q 005661 267 FVGVGARRVRDLFSAAKK-----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTL-NQLLVELDGF------------KQNE 328 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l-~~LL~~ld~~------------~~~~ 328 (685)
|+|++++++|++|..|+. .+||||||||||++++++.........+.+ .+||+.||+. ....
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 999999999999999975 469999999999999988644333334444 7888888753 3456
Q ss_pred CEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCC----CCHHHHHHHH
Q 005661 329 GIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPG----FSGADLANLV 404 (685)
Q Consensus 329 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G----~sgadI~~lv 404 (685)
+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++..+. ..|+..|+..++| |+|+--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 7999999999999999999999999864 5899999999999999987554 5788889998877 5666555566
Q ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHhcccccccccccchhhhhhhHHHhhhHHHhh
Q 005661 405 NIAALKAAMDGAKAVTMADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAV 462 (685)
Q Consensus 405 ~~A~~~A~~~~~~~It~edl~~A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~ 462 (685)
.++...-..+ --++..-++++...+ ....+.+...-.-.+-|+||.++..
T Consensus 345 d~~v~~~i~~-------~g~~~~~~~l~~~~~-~~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 345 DDEVRKWIAE-------VGVENLGKKLVNSKK-GPPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHHH-------hhHHHHHHHHhcCCC-CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 5554433221 112222233333222 2344555555566788999998763
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7e-32 Score=292.52 Aligned_cols=243 Identities=36% Similarity=0.584 Sum_probs=214.1
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
..++.|+|+.|++.+|+.+.+.+-+ +..+..|..+. .+++|+||.||||||||+|++|||.|.+..|+.++.+.+..+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3578999999999999999999998 67788887543 456799999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc--CCCEEEEEecCCcCcCcc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ--NEGIIVIAATNFPESLDK 344 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~--~~~ViVIaaTN~p~~LD~ 344 (685)
|+|++++.++.+|.-|+..+|+|+||||+|.++.+|.++.++...+...++|.++++... .+.|+||+|||+|+.+|.
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~De 305 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDE 305 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHH
Confidence 999999999999999999999999999999999999888888888999999999988644 457999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhh-cccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC--------
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV-LKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG-------- 415 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~-~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~-------- 415 (685)
+++| ||.+.++||+||.+.|..+|+..+.+. ....+.|+..+++.|+||||.||.++|.+|++--.+..
T Consensus 306 a~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~ 383 (428)
T KOG0740|consen 306 AARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEF 383 (428)
T ss_pred HHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhh
Confidence 9999 999999999999999999999999877 22345778999999999999999999999976543322
Q ss_pred -----CCccCHHHHHHHHHHHhc
Q 005661 416 -----AKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 416 -----~~~It~edl~~A~~~v~~ 433 (685)
.+.|+..||..+++.+.+
T Consensus 384 ~~~~~~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 384 IDADKIRPITYPDFKNAFKNIKP 406 (428)
T ss_pred cchhccCCCCcchHHHHHHhhcc
Confidence 234666777777776643
No 39
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-25 Score=252.47 Aligned_cols=349 Identities=27% Similarity=0.345 Sum_probs=262.5
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHH
Q 005661 195 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR 274 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ 274 (685)
...+++.... +++..+.-+..-...+.+..-.+||+|+||||||++++++|.++|.+++.++|.++.....+..+..
T Consensus 402 ~~~~~~~~~~---~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etk 478 (953)
T KOG0736|consen 402 SPPGLEAKVL---ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETK 478 (953)
T ss_pred CCccchHHHH---HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHH
Confidence 3445555544 3333333332223334555557999999999999999999999999999999999998888888999
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCCEEEEEecCCcCcCcccccCCCCcc
Q 005661 275 VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDKALVRPGRFD 353 (685)
Q Consensus 275 ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~-~~~~ViVIaaTN~p~~LD~aLlRpgRFd 353 (685)
+..+|..|+...|+||||-++|-++.+...+..-.....++.++. +|.+. ...+++||++|+..+.+++.+++ -|-
T Consensus 479 l~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~ 555 (953)
T KOG0736|consen 479 LQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFL 555 (953)
T ss_pred HHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhh
Confidence 999999999999999999999999866655555555566666655 34444 55789999999999999999998 666
Q ss_pred cccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH---HcC---------------
Q 005661 354 RHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAA---MDG--------------- 415 (685)
Q Consensus 354 ~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~---~~~--------------- 415 (685)
..|.++.|+.++|.+||+.++.......++.+..++.+|.||+.+|+..++..+-..+. ...
T Consensus 556 ~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~ 635 (953)
T KOG0736|consen 556 HEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELC 635 (953)
T ss_pred hhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccc
Confidence 68999999999999999999999988889999999999999999999988866522221 111
Q ss_pred --CCccCHHHHHHHHHHHhcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCcc------ceEEe
Q 005661 416 --AKAVTMADLEYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSL------GMVAQ 487 (685)
Q Consensus 416 --~~~It~edl~~A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~------G~~~~ 487 (685)
...++++||.+|++++... -..+ -|+.+|.+|++..-|+-- =-|.+
T Consensus 636 ~~~~~l~~edf~kals~~~~~--------------------fs~a------iGAPKIPnV~WdDVGGLeevK~eIldTIq 689 (953)
T KOG0736|consen 636 AAGFLLTEEDFDKALSRLQKE--------------------FSDA------IGAPKIPNVSWDDVGGLEEVKTEILDTIQ 689 (953)
T ss_pred cccceecHHHHHHHHHHHHHh--------------------hhhh------cCCCCCCccchhcccCHHHHHHHHHHHhc
Confidence 1467888888888765210 0111 156777788876665311 01233
Q ss_pred cCCCCcccccHHHHHHHHHHhhchH-hhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCC
Q 005661 488 LPDKDETSISRKQMLARLDVCMGGR-VAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDNGKSM 566 (685)
Q Consensus 488 ~p~~~~~~~t~~~l~~~i~v~lgGr-aAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~~~~~ 566 (685)
+|-++..+++. |=| -...++||+ ++||. |.+|.+..|+|-++ ++++. |.++
T Consensus 690 lPL~hpeLfss-----------glrkRSGILLYGP--PGTGK-------TLlAKAVATEcsL~----FlSVK----GPEL 741 (953)
T KOG0736|consen 690 LPLKHPELFSS-----------GLRKRSGILLYGP--PGTGK-------TLLAKAVATECSLN----FLSVK----GPEL 741 (953)
T ss_pred CcccChhhhhc-----------cccccceeEEECC--CCCch-------HHHHHHHHhhceee----EEeec----CHHH
Confidence 44433333221 223 456899998 78999 99999999999886 66664 5667
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005661 567 STETRLLIEKEVRNFLDRAYNNAKTILTMHSKELHALAN 605 (685)
Q Consensus 567 s~~~~~~id~eV~~ll~~a~~~a~~iL~~~~~~L~~lA~ 605 (685)
-..+....|+.||+++++|.+.+.|+|. .++||.||-
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIF--FDELDSlAP 778 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIF--FDELDSLAP 778 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEE--eccccccCc
Confidence 7777778899999999999999999997 777776653
No 40
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.2e-22 Score=226.27 Aligned_cols=349 Identities=24% Similarity=0.292 Sum_probs=247.5
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC----CCEEEeeccchhhhHhh
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG----VPFFSCSGSEFEEMFVG 269 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~----~~fi~vs~s~l~~~~~g 269 (685)
.|++-...+|++.-+ +...| +-.+.+|||+||+|+|||.|+++++.++. +.+..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 455555566655543 21122 33455799999999999999999999884 56788999998877666
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCC-CCc-hHHHHHHHHHHHHHh-hcc-ccCCCEEEEEecCCcCcCccc
Q 005661 270 VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRN-PKD-QQYMKMTLNQLLVEL-DGF-KQNEGIIVIAATNFPESLDKA 345 (685)
Q Consensus 270 ~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~-~~~-~~~~~~~l~~LL~~l-d~~-~~~~~ViVIaaTN~p~~LD~a 345 (685)
...+.++.+|..+.+++|+||+||++|.|.+... .+. .......++.+++++ ..| ..+..+.+|++.+....|+|.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 6677889999999999999999999999987222 221 122233334444332 222 344557999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc----CCCccC
Q 005661 346 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMD----GAKAVT 420 (685)
Q Consensus 346 LlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~----~~~~It 420 (685)
|..|++|+.++.+|.|+..+|.+||++.+++..... .-|++.++..|+||...|+..++.+|...|.++ +.+.+|
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kllt 637 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLT 637 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccch
Confidence 999999999999999999999999999998875321 223445999999999999999999998887732 234789
Q ss_pred HHHHHHHHHHHhcccccccccccch----hhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCccceEEecCCCCcccc
Q 005661 421 MADLEYAKDKIMMGSERKSAVISDE----SRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSI 496 (685)
Q Consensus 421 ~edl~~A~~~v~~g~~~~~~~~s~~----~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~ 496 (685)
.++|.++++...+-.-|.- .++.. .-..-.+||+-.++...+-- |.+.
T Consensus 638 ke~f~ksL~~F~P~aLR~i-k~~k~tgi~w~digg~~~~k~~l~~~i~~-----------------------P~ky---- 689 (952)
T KOG0735|consen 638 KELFEKSLKDFVPLALRGI-KLVKSTGIRWEDIGGLFEAKKVLEEVIEW-----------------------PSKY---- 689 (952)
T ss_pred HHHHHHHHHhcChHHhhhc-cccccCCCCceecccHHHHHHHHHHHHhc-----------------------cccc----
Confidence 9999999998776443321 11111 11334567776666543321 1111
Q ss_pred cHHHHHHHHHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCHHHHHHHHH
Q 005661 497 SRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDNGKSMSTETRLLIEK 576 (685)
Q Consensus 497 t~~~l~~~i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~~~~~s~~~~~~id~ 576 (685)
.++++..-+- --+..++||+ +++|. |-||-+..++|+|. ++++. |.++..++....|+
T Consensus 690 --p~if~~~plr---~~~giLLyGp--pGcGK-------T~la~a~a~~~~~~----fisvK----GPElL~KyIGaSEq 747 (952)
T KOG0735|consen 690 --PQIFANCPLR---LRTGILLYGP--PGCGK-------TLLASAIASNSNLR----FISVK----GPELLSKYIGASEQ 747 (952)
T ss_pred --hHHHhhCCcc---cccceEEECC--CCCcH-------HHHHHHHHhhCCee----EEEec----CHHHHHHHhcccHH
Confidence 1222221111 1134688998 57777 99999999999997 66664 55666777778899
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005661 577 EVRNFLDRAYNNAKTILTMHSKELHALA 604 (685)
Q Consensus 577 eV~~ll~~a~~~a~~iL~~~~~~L~~lA 604 (685)
.||.++.+|...+.|||. .+++|.||
T Consensus 748 ~vR~lF~rA~~a~PCiLF--FDEfdSiA 773 (952)
T KOG0735|consen 748 NVRDLFERAQSAKPCILF--FDEFDSIA 773 (952)
T ss_pred HHHHHHHHhhccCCeEEE--eccccccC
Confidence 999999999999999997 66665443
No 41
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.3e-21 Score=221.96 Aligned_cols=338 Identities=35% Similarity=0.488 Sum_probs=262.2
Q ss_pred hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEE
Q 005661 213 LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFI 292 (685)
Q Consensus 213 l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfI 292 (685)
+..++.|..++..+|++++++||||||||+++++++.+ +..++.+++.....++.|......+.+|..++...|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677788999999999999999999999999999999 77668889999999999999999999999999999999999
Q ss_pred cCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHH
Q 005661 293 DEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMES 372 (685)
Q Consensus 293 DEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~ 372 (685)
||+|.+...+...........+.+++..++++.... +++++.||++..+|+++.+||||++.+.++.|+...+.+|+..
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~ 161 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQI 161 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHH
Confidence 999999998877555566788899999999988444 9999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC------CCccCHHHHHHHHHHHhcc--ccccccccc-
Q 005661 373 HMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG------AKAVTMADLEYAKDKIMMG--SERKSAVIS- 443 (685)
Q Consensus 373 ~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~------~~~It~edl~~A~~~v~~g--~~~~~~~~s- 443 (685)
+........+.+...++..+.|++++++..++..+...+.++. ...++.+++.++++++... ........+
T Consensus 162 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~ 241 (494)
T COG0464 162 HTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDEDVTL 241 (494)
T ss_pred HHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcccccccCCCCcce
Confidence 9988877778899999999999999999999999998888774 3458899999999987652 100000000
Q ss_pred chhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCccceEEecCCCCcccccHHHHHHHHHHhhchHhhhhhhcCCCC
Q 005661 444 DESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGENE 523 (685)
Q Consensus 444 ~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~v~lgGraAEel~~G~~~ 523 (685)
.+..-..-..+..+-.+.+.+....-..+..+. ..--.|+||+
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~-----------------------------------~~~giLl~Gp-- 284 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLR-----------------------------------PPKGVLLYGP-- 284 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCC-----------------------------------CCCeeEEECC--
Confidence 000111123333444444433322110000000 0002478998
Q ss_pred ccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005661 524 VTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDNGKSMSTETRLLIEKEVRNFLDRAYNNAKTILTMHSKELHAL 603 (685)
Q Consensus 524 ~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~~~~~s~~~~~~id~eV~~ll~~a~~~a~~iL~~~~~~L~~l 603 (685)
+++|. |-+|.++-.++|.. ++++.. .++..+.-...++.|++++..|+..+.++|. .+++|.+
T Consensus 285 PGtGK-------T~lAkava~~~~~~----fi~v~~----~~l~sk~vGesek~ir~~F~~A~~~~p~iiF--iDEiDs~ 347 (494)
T COG0464 285 PGTGK-------TLLAKAVALESRSR----FISVKG----SELLSKWVGESEKNIRELFEKARKLAPSIIF--IDEIDSL 347 (494)
T ss_pred CCCCH-------HHHHHHHHhhCCCe----EEEeeC----HHHhccccchHHHHHHHHHHHHHcCCCcEEE--EEchhhh
Confidence 68888 88999999877764 444431 2455555667789999999999988889887 7777776
Q ss_pred HHH
Q 005661 604 ANA 606 (685)
Q Consensus 604 A~~ 606 (685)
+..
T Consensus 348 ~~~ 350 (494)
T COG0464 348 ASG 350 (494)
T ss_pred hcc
Confidence 654
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=2.7e-21 Score=204.36 Aligned_cols=223 Identities=22% Similarity=0.293 Sum_probs=164.7
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCC---eEEEEcCCCCChHHHHHHHHHhc-------CCCEEEeeccc
Q 005661 193 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK---GVLLVGPPGTGKTMLARAIAGEA-------GVPFFSCSGSE 262 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pk---gvLL~GPPGTGKT~LAralA~e~-------~~~fi~vs~s~ 262 (685)
+++++|++++|+++++++.++..++.+...|...|. ++||+||||||||++|+++|+.+ ..+|+.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 358999999999999999887777777777876653 48999999999999999999875 23799999999
Q ss_pred hhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC--
Q 005661 263 FEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE-- 340 (685)
Q Consensus 263 l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~-- 340 (685)
+...|+|..+...+.+|+.+. ++||||||+|.+...+.. .......+..|+..|+.. ..+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc--cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHH
Confidence 999999988888888888763 469999999999654322 223455677777777743 35678888876432
Q ss_pred ---cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-HHH----HHhc--CCCCC-HHHHHHHHHHHHH
Q 005661 341 ---SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMI----IARG--TPGFS-GADLANLVNIAAL 409 (685)
Q Consensus 341 ---~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~----la~~--t~G~s-gadI~~lv~~A~~ 409 (685)
.++|+|.+ ||+.+|+|++|+.+++.+|++.++++....-+.+ ... +.+. .+.|. ++++++++..+..
T Consensus 175 ~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 175 KFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 24588988 9999999999999999999999998653221111 122 2221 23444 8999999998876
Q ss_pred HHHHc----CCCccCHHHH
Q 005661 410 KAAMD----GAKAVTMADL 424 (685)
Q Consensus 410 ~A~~~----~~~~It~edl 424 (685)
.-+.+ +...++.+|+
T Consensus 253 ~~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 253 RQANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHHcCCCCCCCHHHH
Confidence 65432 2334455544
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.4e-21 Score=202.12 Aligned_cols=228 Identities=29% Similarity=0.424 Sum_probs=173.1
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~ 268 (685)
.+..|++|+-....+..++++...-.|.+. .-.+-++||||||||||||++||-||...|..+-.+.+.+.... -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 445599999999999999988876555543 22344689999999999999999999999999999988876532 2
Q ss_pred hhhhHHHHHHHHHHHhCC-CeEEEEcCchhhcCCCCCC-chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 269 GVGARRVRDLFSAAKKRS-PCIIFIDEIDAIGGSRNPK-DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 269 g~~~~~ir~lF~~A~~~~-P~ILfIDEID~l~~~r~~~-~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
..+...+..+|+-+++.. .-+|||||.|+++-.|+.. ..+.....+|.||-.-- .....++++.+||+|..+|.++
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV 502 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAV 502 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHH
Confidence 234567899999997654 4588999999998877653 45556778888874322 3456799999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-----------------------ccc----HHHHHhcCCCCCHHH
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-----------------------DVD----LMIIARGTPGFSGAD 399 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-----------------------~vd----l~~la~~t~G~sgad 399 (685)
.. |||..|+||+|..++|..||..|+.++...+ ..+ +...|+.|.||||++
T Consensus 503 ~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 503 ND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred Hh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 87 9999999999999999999999998753211 111 345788999999999
Q ss_pred HHHHHHHHHHHHHHcCC--CccCHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGA--KAVTMADLEYA 427 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~--~~It~edl~~A 427 (685)
|..|+- ...|..-++ -.++...|++.
T Consensus 581 iakLva--~vQAavYgsedcvLd~~lf~e~ 608 (630)
T KOG0742|consen 581 IAKLVA--SVQAAVYGSEDCVLDEALFDER 608 (630)
T ss_pred HHHHHH--HHHHHHhcccchhhHHHHHHHH
Confidence 999973 344433332 23444444443
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=1e-21 Score=181.42 Aligned_cols=130 Identities=47% Similarity=0.774 Sum_probs=117.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCC-CeEEEEcCchhhcCCCCCCchH
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRS-PCIIFIDEIDAIGGSRNPKDQQ 308 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~ 308 (685)
|||+||||||||++|+.+|+.++.+++.+++.++...+.+.....++.+|..++... ||||||||+|.+..+.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998888999999999999999887 9999999999998776444556
Q ss_pred HHHHHHHHHHHHhhccccC-CCEEEEEecCCcCcCcccccCCCCcccccccCC
Q 005661 309 YMKMTLNQLLVELDGFKQN-EGIIVIAATNFPESLDKALVRPGRFDRHIVVPN 360 (685)
Q Consensus 309 ~~~~~l~~LL~~ld~~~~~-~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~ 360 (685)
.....++.|+..++..... .+++||++||.++.+++.++| +||+..|++|+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 6778889999999987665 569999999999999999998 89999999874
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1.4e-20 Score=196.45 Aligned_cols=212 Identities=21% Similarity=0.293 Sum_probs=156.6
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCC---CeEEEEcCCCCChHHHHHHHHHhc-------CCCEEEeecc
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLP---KGVLLVGPPGTGKTMLARAIAGEA-------GVPFFSCSGS 261 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~p---kgvLL~GPPGTGKT~LAralA~e~-------~~~fi~vs~s 261 (685)
.+++++|++++|+.+++++.+..........|.+.+ .++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 367899999999999999998655555555666543 368999999999999999999864 3478999999
Q ss_pred chhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC-
Q 005661 262 EFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE- 340 (685)
Q Consensus 262 ~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~- 340 (685)
++...|+|.....++++|..+. ++||||||+|.|.... ........++.|+..|+.. ..++++|++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchh
Confidence 9999999999899999998774 4699999999996321 1223345677888888754 34566666654322
Q ss_pred ----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHh---------cCCCCCHHHHHHHHHH
Q 005661 341 ----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIAR---------GTPGFSGADLANLVNI 406 (685)
Q Consensus 341 ----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~---------~t~G~sgadI~~lv~~ 406 (685)
.++|+|.+ ||+..|.||.++.+++.+|++.++......-+.+ +..++. ....-+++.++|++..
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 36789988 9998999999999999999999997643221111 222211 1122467889999998
Q ss_pred HHHHHHH
Q 005661 407 AALKAAM 413 (685)
Q Consensus 407 A~~~A~~ 413 (685)
|....+.
T Consensus 234 a~~~~~~ 240 (261)
T TIGR02881 234 AIRRQAV 240 (261)
T ss_pred HHHHHHH
Confidence 8766543
No 46
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.2e-20 Score=199.25 Aligned_cols=211 Identities=20% Similarity=0.241 Sum_probs=161.4
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCC---CCeEEEEcCCCCChHHHHHHHHHhcC-------CCEEEeeccch
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKL---PKGVLLVGPPGTGKTMLARAIAGEAG-------VPFFSCSGSEF 263 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~---pkgvLL~GPPGTGKT~LAralA~e~~-------~~fi~vs~s~l 263 (685)
++++|++++|+++.+++.++..++.+.+.|... ..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 369999999999999999988888888888765 23799999999999999999988762 37999999999
Q ss_pred hhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc--C-
Q 005661 264 EEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP--E- 340 (685)
Q Consensus 264 ~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p--~- 340 (685)
...|.|.....++.+|+.+. +++|||||++.+...+.. .......++.|+..|+. ...+++||++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc--cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHH
Confidence 88888988888888888774 479999999998644322 22344566777777774 34678888887643 3
Q ss_pred --cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhc-------CCCCCHHHHHHHHHHHHHH
Q 005661 341 --SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARG-------TPGFSGADLANLVNIAALK 410 (685)
Q Consensus 341 --~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~-------t~G~sgadI~~lv~~A~~~ 410 (685)
.++|+|.+ ||+..|+||+++.+++.+|+++++++....-+.+ ...+... ..--++++++|++..+...
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 24799998 9999999999999999999999998753221111 2223222 1223579999999988776
Q ss_pred HHH
Q 005661 411 AAM 413 (685)
Q Consensus 411 A~~ 413 (685)
.+.
T Consensus 253 ~~~ 255 (284)
T TIGR02880 253 QAN 255 (284)
T ss_pred HHH
Confidence 554
No 47
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.1e-21 Score=206.82 Aligned_cols=205 Identities=25% Similarity=0.386 Sum_probs=161.4
Q ss_pred CCCCCCcCCCcHHHHHHHH-HHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 189 SNTKFSDVKGVDEAKQELE-EIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~-e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
-+-+|+-|+=..+.|+++. .+.+|++..+-|++.|....+|.|||||||||||+++-|+|++++..++.++.++....
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 3478999999999999986 56667999999999999999999999999999999999999999999999987765432
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC--C---chH--HHHHHHHHHHHHhhccccCC--CEEEEEecCC
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP--K---DQQ--YMKMTLNQLLVELDGFKQNE--GIIVIAATNF 338 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~--~---~~~--~~~~~l~~LL~~ld~~~~~~--~ViVIaaTN~ 338 (685)
.. ++.++..... .+||+|++||+-+.-+.. . ..+ ...-++..||+.+||..... .-|||.|||.
T Consensus 275 ----~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ----SD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ----HH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 22 6777666543 469999999987542211 1 111 23357899999999987765 6899999999
Q ss_pred cCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcc--cHHHHHhcCCCCCHHHHHHH
Q 005661 339 PESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV--DLMIIARGTPGFSGADLANL 403 (685)
Q Consensus 339 p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~v--dl~~la~~t~G~sgadI~~l 403 (685)
++.|||||+||||.|.+|+++..+..+-+.+++.|+.-.. ...+ ++..+...+. .||||+...
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h~L~~eie~l~~~~~-~tPA~V~e~ 412 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DHRLFDEIERLIEETE-VTPAQVAEE 412 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-CcchhHHHHHHhhcCc-cCHHHHHHH
Confidence 9999999999999999999999999999999999986532 1111 1233333333 699998744
No 48
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.9e-19 Score=184.88 Aligned_cols=229 Identities=23% Similarity=0.340 Sum_probs=174.4
Q ss_pred CCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCC-----CCCeEEEEcCCCCChHHHHHHHHHhcC---------CCEEE
Q 005661 193 FSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGK-----LPKGVLLVGPPGTGKTMLARAIAGEAG---------VPFFS 257 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~-----~pkgvLL~GPPGTGKT~LAralA~e~~---------~~fi~ 257 (685)
|+.++=-.+.|++|..++-. +. |.+.+.. ..+-+||+||||||||+|+|++|..+. ..++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~----fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALL----FSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHH----HHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 56666667788888776654 32 2222222 234599999999999999999999873 46799
Q ss_pred eeccchhhhHhhhhhHHHHHHHHHHHhC---C--CeEEEEcCchhhcCCCCC----CchHHHHHHHHHHHHHhhccccCC
Q 005661 258 CSGSEFEEMFVGVGARRVRDLFSAAKKR---S--PCIIFIDEIDAIGGSRNP----KDQQYMKMTLNQLLVELDGFKQNE 328 (685)
Q Consensus 258 vs~s~l~~~~~g~~~~~ir~lF~~A~~~---~--P~ILfIDEID~l~~~r~~----~~~~~~~~~l~~LL~~ld~~~~~~ 328 (685)
+++..+.++|.+++.+.+..+|++.... . -..++|||+++++..|.+ .+....-+++|.+|++||.++..+
T Consensus 217 inshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~ 296 (423)
T KOG0744|consen 217 INSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP 296 (423)
T ss_pred EehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999987542 2 246679999999876632 344556789999999999999999
Q ss_pred CEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-------------ccc-----HHHHHh
Q 005661 329 GIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-------------DVD-----LMIIAR 390 (685)
Q Consensus 329 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-------------~vd-----l~~la~ 390 (685)
+|++++|+|-.+.||.|+.. |-|.+.++.+|+...|.+|++.++....... .++ ...+..
T Consensus 297 NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~ 374 (423)
T KOG0744|consen 297 NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIE 374 (423)
T ss_pred CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHH
Confidence 99999999999999999997 9999999999999999999999987642211 111 112222
Q ss_pred c-CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005661 391 G-TPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKD 429 (685)
Q Consensus 391 ~-t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~ 429 (685)
. +.|+||+-|+.|=-.| +|..-....|+.++|..|+-
T Consensus 375 ~~~~gLSGRtlrkLP~La--ha~y~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 375 LSTVGLSGRTLRKLPLLA--HAEYFRTFTVDLSNFLLALL 412 (423)
T ss_pred HhhcCCccchHhhhhHHH--HHhccCCCccChHHHHHHHH
Confidence 2 5899999999875433 23333345889988877653
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=7.3e-18 Score=181.66 Aligned_cols=214 Identities=24% Similarity=0.300 Sum_probs=158.6
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~ 268 (685)
.+.+|+|++|+++.++.+..++...+.+ ...+.++||+||||||||++|+++|++++..+..+++..+..
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 3458999999999999999888653322 345678999999999999999999999999988877654332
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCEEE
Q 005661 269 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGIIV 332 (685)
Q Consensus 269 g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~----------------~~~~ViV 332 (685)
...+..++... ..++||||||||.+... ....+..+ |+.+. ...++.+
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~~~--------~~e~l~~~---~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPV--------VEEILYPA---MEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcchH--------HHHHHHHH---HHhcceeeeeccCccccceeecCCCceE
Confidence 12233444333 35689999999988421 12222222 22211 1134788
Q ss_pred EEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcc-cHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005661 333 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV-DLMIIARGTPGFSGADLANLVNIAALKA 411 (685)
Q Consensus 333 IaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~v-dl~~la~~t~G~sgadI~~lv~~A~~~A 411 (685)
|++||++..++++|++ ||...+.+++|+.+++.+|++..+......-+- -+..|+..+.| +++.+.++++.+...+
T Consensus 154 i~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a 230 (328)
T PRK00080 154 IGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFA 230 (328)
T ss_pred EeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHH
Confidence 9999999999999987 998889999999999999999988765332221 25678888876 5688889998888777
Q ss_pred HHcCCCccCHHHHHHHHHHH
Q 005661 412 AMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 412 ~~~~~~~It~edl~~A~~~v 431 (685)
...+...|+.+++..+++.+
T Consensus 231 ~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 231 QVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHcCCCCCCHHHHHHHHHHh
Confidence 77667789999999998764
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.78 E-value=5.9e-18 Score=170.18 Aligned_cols=189 Identities=26% Similarity=0.320 Sum_probs=123.8
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhh
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVG 269 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g 269 (685)
+.+|+|++|+++++..++-+++..+.. .+...++|||||||+||||||+.||++++++|..+++..+...
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~--- 89 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA--- 89 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC---
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH---
Confidence 458999999999999998877754321 2234489999999999999999999999999999988654321
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc----------------CCCEEEE
Q 005661 270 VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ----------------NEGIIVI 333 (685)
Q Consensus 270 ~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~----------------~~~ViVI 333 (685)
..+..++.... ...|||||||+.+. ...+ .-|+..|+.+.- -.++.+|
T Consensus 90 ---~dl~~il~~l~--~~~ILFIDEIHRln--------k~~q---e~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 90 ---GDLAAILTNLK--EGDILFIDEIHRLN--------KAQQ---EILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ---HHHHHHHHT----TT-EEEECTCCC----------HHHH---HHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred ---HHHHHHHHhcC--CCcEEEEechhhcc--------HHHH---HHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 22333333333 35699999999883 2223 344445554321 1358999
Q ss_pred EecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhcCCCCCHHHHHHHHHHH
Q 005661 334 AATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNIA 407 (685)
Q Consensus 334 aaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~t~G~sgadI~~lv~~A 407 (685)
+||++...|.+.|+. ||.....+..++.++..+|++.........-+-+ ...||+++.| +++-..++++.+
T Consensus 154 gATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 154 GATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp EEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred eeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 999999999999997 9998889999999999999998876654332222 4568998886 777766777654
No 51
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.78 E-value=9.4e-18 Score=178.50 Aligned_cols=210 Identities=22% Similarity=0.275 Sum_probs=152.5
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhh
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVG 271 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~ 271 (685)
+|+|++|++++++.|..++...+.. ...+.+++|+||||||||++|+++|++++.++..+++......
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~----- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP----- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc-----
Confidence 6999999999999999887643221 2345689999999999999999999999998877765433211
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCEEEEEe
Q 005661 272 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGIIVIAA 335 (685)
Q Consensus 272 ~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~----------------~~~~ViVIaa 335 (685)
..+...+... ..+.+|||||+|.+... .... |+..|+.+. ...++.+|++
T Consensus 70 -~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------~~e~---l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 70 -GDLAAILTNL--EEGDVLFIDEIHRLSPA--------VEEL---LYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred -hhHHHHHHhc--ccCCEEEEehHhhhCHH--------HHHH---hhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 1122222222 34679999999988421 1122 222222211 1234889999
Q ss_pred cCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005661 336 TNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGADLANLVNIAALKAAMD 414 (685)
Q Consensus 336 TN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 414 (685)
||++..+++++++ ||...+.+++|+.+++.+|++..+......-+ -.+..+++.+.| .++.+.++++.+...|...
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~ 212 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQVR 212 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHc
Confidence 9999999999988 99888899999999999999988875433211 224568888877 5577888998887777666
Q ss_pred CCCccCHHHHHHHHHH
Q 005661 415 GAKAVTMADLEYAKDK 430 (685)
Q Consensus 415 ~~~~It~edl~~A~~~ 430 (685)
+...|+.+++..+++.
T Consensus 213 ~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 213 GQKIINRDIALKALEM 228 (305)
T ss_pred CCCCcCHHHHHHHHHH
Confidence 6678999999999877
No 52
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=1e-17 Score=198.17 Aligned_cols=220 Identities=22% Similarity=0.311 Sum_probs=161.1
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEeec
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSG 260 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs~ 260 (685)
-++++++|+++..+.+.+++. . ....++||+||||||||++|+++|..+ +..++.+++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~---~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLC---R---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 468999999998776554442 1 224489999999999999999999987 677999998
Q ss_pred cchh--hhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCch-HHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 261 SEFE--EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ-QYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 261 s~l~--~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~-~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
+.+. .+|.|+.+.+++.+|+.++.+.|+||||||||.|.+.+...+. ...... |...| .++.+.+|++||
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~---L~~~l----~~g~i~~IgaTt 319 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNL---LKPAL----SSGKLRCIGSTT 319 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHH---HHHHH----hCCCeEEEEecC
Confidence 8887 4688999999999999998888999999999999876532221 112222 22223 246799999999
Q ss_pred CcC-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc--c---cHHHHHhcCCCCC-----HHHHHH
Q 005661 338 FPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD--V---DLMIIARGTPGFS-----GADLAN 402 (685)
Q Consensus 338 ~p~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~--v---dl~~la~~t~G~s-----gadI~~ 402 (685)
..+ .+|++|.| ||. .|.|+.|+.+++.+||+........... + .+..++..+..|- +.--..
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 743 47999999 997 7999999999999999987765422111 2 2444555544432 344456
Q ss_pred HHHHHHHHHHHc----CCCccCHHHHHHHHHHHh
Q 005661 403 LVNIAALKAAMD----GAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 403 lv~~A~~~A~~~----~~~~It~edl~~A~~~v~ 432 (685)
++++|+...... ....|+.+|+..++..+.
T Consensus 397 lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 397 VIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 777776544332 234699999999998864
No 53
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.76 E-value=2.2e-17 Score=196.37 Aligned_cols=165 Identities=28% Similarity=0.391 Sum_probs=124.5
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchh---------
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE--------- 264 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~--------- 264 (685)
+|+.|++++|+.+.+++...... +...+..+||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 46899999999999876642211 111223799999999999999999999999999999876542
Q ss_pred hhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc-----cc--------cCCCEE
Q 005661 265 EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG-----FK--------QNEGII 331 (685)
Q Consensus 265 ~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~-----~~--------~~~~Vi 331 (685)
..|+|.....+.+.|..+....| ||||||||.+....+.. . .+.|+..||. |. ..++++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~----~---~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD----P---ASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC----H---HHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 23666666777888888766655 89999999998543221 1 2334443431 21 125799
Q ss_pred EEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhh
Q 005661 332 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMS 375 (685)
Q Consensus 332 VIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~ 375 (685)
+|+|||.++.++++|++ ||+ .|+|+.|+.+++.+|++.++.
T Consensus 466 ~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 466 FIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred EEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 99999999999999998 996 789999999999999998873
No 54
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.74 E-value=4.7e-17 Score=191.26 Aligned_cols=221 Identities=24% Similarity=0.330 Sum_probs=163.1
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEeec
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSG 260 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs~ 260 (685)
-+++.++|.++..+.+.+++.. ..+.++||+||||||||++|++++... +..++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 3578899999887777665542 123478999999999999999999864 445555555
Q ss_pred cchh--hhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC-CchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 261 SEFE--EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP-KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 261 s~l~--~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~-~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
+.+. ..|.|..+.+++.+|..+....++||||||||.|.+.+.. ........++..++ ..+.+.+|++||
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-------~~g~i~vIgATt 323 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-------SSGKIRVIGSTT 323 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-------hCCCeEEEecCC
Confidence 5544 3578888999999999998888999999999999876643 22333333343333 357799999999
Q ss_pred CcC-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHH-----HHhc-----CCCCCHHHHHH
Q 005661 338 FPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMI-----IARG-----TPGFSGADLAN 402 (685)
Q Consensus 338 ~p~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~-----la~~-----t~G~sgadI~~ 402 (685)
.++ ..|++|.| ||+ .|.|+.|+.+++.+||+.+..++....++++.. ++.. +..+-+.....
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 875 47999999 996 799999999999999999887776655555432 2221 33455678889
Q ss_pred HHHHHHHHHHH----cCCCccCHHHHHHHHHHHhc
Q 005661 403 LVNIAALKAAM----DGAKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 403 lv~~A~~~A~~----~~~~~It~edl~~A~~~v~~ 433 (685)
++++|+..... .....|+.+|+...+.+...
T Consensus 401 lldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 401 VIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred HHHHHHHhhccCcccccccccChhhHHHHHHHHhC
Confidence 99998865422 23456899999999887653
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=4.3e-16 Score=159.64 Aligned_cols=216 Identities=24% Similarity=0.303 Sum_probs=165.3
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~ 268 (685)
.+.+|+|.+|++++|+.|+-++..-+. ......++||+||||.||||||..+|+++|+++...++..+...
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~-------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~-- 91 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKK-------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP-- 91 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHh-------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh--
Confidence 356799999999999999988876333 23456689999999999999999999999999999988766532
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCEEE
Q 005661 269 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGIIV 332 (685)
Q Consensus 269 g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~----------------~~~~ViV 332 (685)
| -+-.++.... ..+|||||||+++... ...++..- |+.|. .-.++.+
T Consensus 92 g----DlaaiLt~Le--~~DVLFIDEIHrl~~~--------vEE~LYpa---MEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 92 G----DLAAILTNLE--EGDVLFIDEIHRLSPA--------VEEVLYPA---MEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred h----hHHHHHhcCC--cCCeEEEehhhhcChh--------HHHHhhhh---hhheeEEEEEccCCccceEeccCCCeeE
Confidence 2 2223333332 3469999999998532 33344333 33331 1246899
Q ss_pred EEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcc-cHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005661 333 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV-DLMIIARGTPGFSGADLANLVNIAALKA 411 (685)
Q Consensus 333 IaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~v-dl~~la~~t~G~sgadI~~lv~~A~~~A 411 (685)
|+||.+...|...|+. ||.....+..++.++..+|++.........-+- ....+|+++.| +++--..|+++..-+|
T Consensus 155 IGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa 231 (332)
T COG2255 155 IGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFA 231 (332)
T ss_pred eeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHH
Confidence 9999999999999987 999999999999999999999988665443222 24568888876 7777778899898999
Q ss_pred HHcCCCccCHHHHHHHHHHHhc
Q 005661 412 AMDGAKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 412 ~~~~~~~It~edl~~A~~~v~~ 433 (685)
.-.+...|+.+-..+|+..+..
T Consensus 232 ~V~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 232 QVKGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred HHhcCCcccHHHHHHHHHHhCc
Confidence 8888899999888888887644
No 56
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.70 E-value=2.1e-16 Score=180.38 Aligned_cols=212 Identities=25% Similarity=0.365 Sum_probs=146.0
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEE
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFS 257 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~ 257 (685)
..+.+|+|++|+++.++.++..+. ...|.++||+||||||||++|+++++.+ +.+|+.
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 356789999999999888874321 1235689999999999999999998642 468999
Q ss_pred eeccch--h-----hhHhhhhhH----------------HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHH
Q 005661 258 CSGSEF--E-----EMFVGVGAR----------------RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTL 314 (685)
Q Consensus 258 vs~s~l--~-----~~~~g~~~~----------------~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l 314 (685)
++|+.. . +...+.... .....+. ....++|||||||.+. ....
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~-----------~~~q 192 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELH-----------PVQM 192 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCC-----------HHHH
Confidence 998642 1 111111000 0011121 2234699999999883 2233
Q ss_pred HHHHHHhhcc---------c-----------------cCCC-EEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHH
Q 005661 315 NQLLVELDGF---------K-----------------QNEG-IIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRR 367 (685)
Q Consensus 315 ~~LL~~ld~~---------~-----------------~~~~-ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~ 367 (685)
+.|+..|+.. . ...+ .+|++|||.|+.+++++++ |+. .+.+++++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHH
Confidence 4444443210 0 0122 3445666789999999998 875 7889999999999
Q ss_pred HHHHHHhhhhcccC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 005661 368 QIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDK 430 (685)
Q Consensus 368 ~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~ 430 (685)
+|++..+++....- +-.++.++..+ .+++++.++++.|+..|..+++..|+.+|+++++..
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 99999998764321 12244566655 379999999999999998888889999999999753
No 57
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.69 E-value=1.7e-15 Score=164.97 Aligned_cols=223 Identities=25% Similarity=0.324 Sum_probs=152.0
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC---------CCEEEeec
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG---------VPFFSCSG 260 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~---------~~fi~vs~ 260 (685)
+...++++|.++.++.|...+..... ...|.+++|+||||||||++++++++++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 34456899999998888877764211 23456799999999999999999987652 57888898
Q ss_pred cchhhh----------Hh--hh--------hhHHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 261 SEFEEM----------FV--GV--------GARRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 261 s~l~~~----------~~--g~--------~~~~ir~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
...... .. |. .......++.... ...+.||+|||+|.+.... ...+..|+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~ 154 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSR 154 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhc
Confidence 654321 10 10 0122344555443 3457899999999996221 124555554
Q ss_pred Hhhc-cccCCCEEEEEecCCcC---cCcccccCCCCcc-cccccCCCCHHHHHHHHHHHhhhhcccCccc---HHH---H
Q 005661 320 ELDG-FKQNEGIIVIAATNFPE---SLDKALVRPGRFD-RHIVVPNPDVEGRRQIMESHMSKVLKADDVD---LMI---I 388 (685)
Q Consensus 320 ~ld~-~~~~~~ViVIaaTN~p~---~LD~aLlRpgRFd-~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd---l~~---l 388 (685)
..+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++........++ +.. +
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 4221 12236789999999886 46777776 675 5789999999999999999986322211122 222 3
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 389 ARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 389 a~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
+..+.| ..+.+.++|+.|...|..++...|+.+|+..|++.+
T Consensus 233 ~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 233 AAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 334444 455666788899998988888899999999999876
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=3.8e-16 Score=177.51 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=147.1
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 254 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------- 254 (685)
+.+.+|+||+|++.+++.|++.+.. .+++..+||+||+|+|||++|+.+|+.+++.
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 3456899999999999999887762 3456789999999999999999999998761
Q ss_pred ----------------EEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHH
Q 005661 255 ----------------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTL 314 (685)
Q Consensus 255 ----------------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l 314 (685)
++.++.+. ..+...+|++.+.+. .....|+||||+|.|. ....
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~Aa 141 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NHAF 141 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HHHH
Confidence 12222111 122345666665543 2345799999999883 3457
Q ss_pred HHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCC
Q 005661 315 NQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTP 393 (685)
Q Consensus 315 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~ 393 (685)
|.||+.|+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+.+.....+ ..+..|++...
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 888888884 55678999999999999999998 77 58899999999999999888865433222 22556777776
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 394 GFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 394 G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
| +.++..+++.++... +...|+.+++...
T Consensus 217 G-s~RdALsLLdQaia~----~~~~It~~~V~~~ 245 (700)
T PRK12323 217 G-SMRDALSLTDQAIAY----SAGNVSEEAVRGM 245 (700)
T ss_pred C-CHHHHHHHHHHHHHh----ccCCcCHHHHHHH
Confidence 5 778888888766532 2345777776654
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.1e-15 Score=171.74 Aligned_cols=203 Identities=21% Similarity=0.263 Sum_probs=140.5
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC---------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV--------------- 253 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~--------------- 253 (685)
.+.+|+||+|++.+++.|+..+. ..+.|.++||+||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 45689999999999888877655 2346778999999999999999999998865
Q ss_pred ---------CEEEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 254 ---------PFFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 254 ---------~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+. ...++.|+..
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk~ 140 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALLKT 140 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHHHH
Confidence 244444321 1122345555555432 234699999999883 2345677777
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgad 399 (685)
++. ..+.+++|++|+.+..+++++.+ |+. .+.+.+|+.++...+++..+...... .+-.+..|+..+.| +.++
T Consensus 141 LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~ 214 (472)
T PRK14962 141 LEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRD 214 (472)
T ss_pred HHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHH
Confidence 774 34567888888888899999998 774 78999999999999999888654321 12225567776654 4444
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAKD 429 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~~ 429 (685)
+.+.+..+.. ..+ ..||.+|+..++.
T Consensus 215 aln~Le~l~~---~~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 215 ALTMLEQVWK---FSE-GKITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHH---hcC-CCCCHHHHHHHHc
Confidence 4444443332 222 3499999998864
No 60
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.68 E-value=5.5e-16 Score=165.58 Aligned_cols=203 Identities=28% Similarity=0.385 Sum_probs=138.5
Q ss_pred CCCCCcCCCcHHHHHH---HHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 190 NTKFSDVKGVDEAKQE---LEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~---L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
+.+|+|++|++....+ |+.+++ .....+++||||||||||+||+.||+..+.+|..+|....
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--- 84 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--- 84 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc---
Confidence 4579999999987643 333333 1223379999999999999999999999999999987543
Q ss_pred HhhhhhHHHHHHHHHHHhC----CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEec--CCcC
Q 005661 267 FVGVGARRVRDLFSAAKKR----SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT--NFPE 340 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT--N~p~ 340 (685)
+.+.+|.+|+.++.. ...|||||||+.+-.. ....||-.++ ++.|++|++| |..-
T Consensus 85 ----gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-----------QQD~lLp~vE----~G~iilIGATTENPsF 145 (436)
T COG2256 85 ----GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-----------QQDALLPHVE----NGTIILIGATTENPSF 145 (436)
T ss_pred ----cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-----------hhhhhhhhhc----CCeEEEEeccCCCCCe
Confidence 456789999998543 2589999999988321 1233444333 5667888776 3445
Q ss_pred cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-----cc---HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005661 341 SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-----VD---LMIIARGTPGFSGADLANLVNIAALKAA 412 (685)
Q Consensus 341 ~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-----vd---l~~la~~t~G~sgadI~~lv~~A~~~A~ 412 (685)
.|.++|++ |. +++++.+.+.++..++++.-+......-+ ++ +..++..+.| |.+.++|...+.+.
T Consensus 146 ~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~~ 218 (436)
T COG2256 146 ELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLELAAL 218 (436)
T ss_pred eecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHHH
Confidence 79999998 66 47899999999999999985533211111 22 3446666655 78877775544443
Q ss_pred HcC-CCccCHHHHHHHHHHHhc
Q 005661 413 MDG-AKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 413 ~~~-~~~It~edl~~A~~~v~~ 433 (685)
... ...++.+++++.+.+...
T Consensus 219 ~~~~~~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 219 SAEPDEVLILELLEEILQRRSA 240 (436)
T ss_pred hcCCCcccCHHHHHHHHhhhhh
Confidence 322 224458888877766433
No 61
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.2e-15 Score=169.55 Aligned_cols=203 Identities=21% Similarity=0.268 Sum_probs=145.9
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 254 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------- 254 (685)
..+.+|+||+|++.+...|+..+. ..+.|..+||+||||||||++|+.+|+.+++.
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~-----------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALK-----------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 345689999999999998887765 23456679999999999999999999998763
Q ss_pred -----------EEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 255 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 255 -----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
|+.++.. ...+...+|++.+.+. .....|+||||+|.+. ....+.||.
T Consensus 81 C~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NALLK 143 (484)
T PRK14956 81 CLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNALLK 143 (484)
T ss_pred HHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHHHH
Confidence 2222211 0112344566555443 2345699999999883 345788888
Q ss_pred HhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHH
Q 005661 320 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 398 (685)
Q Consensus 320 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sga 398 (685)
.|+. ...++++|.+|+.++.|.+.+++ |+. ++.|.+++.++..+.++..+.+.... .+-.+..|++...| +.+
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~R 217 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVR 217 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHH
Confidence 8873 55788999999999999999998 874 67899999988888888888764332 22235667887776 566
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 399 DLANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 399 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
+..+++.++... ....|+.+++.+.+
T Consensus 218 dAL~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 218 DMLSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 777777665432 22368888887654
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=9.9e-16 Score=176.08 Aligned_cols=202 Identities=21% Similarity=0.278 Sum_probs=145.5
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 254 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------- 254 (685)
+.+.+|+||+|++.+++.|++.+. +.+++..+||+||+|||||++++.+|+.+++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 345689999999999999888765 34567789999999999999999999988652
Q ss_pred -----------EEEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 255 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 255 -----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
++.++.++ ..+...++++++.+.. ....|+||||+|.|. ....|.||+
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----------~~A~NALLK 141 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----------NHAFNAMLK 141 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----------HHHHHHHHH
Confidence 22222211 1223456666665532 234799999999883 234677888
Q ss_pred HhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHH
Q 005661 320 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 398 (685)
Q Consensus 320 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sga 398 (685)
.|+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..++|+..+.+.... .+-.+..|++...| +.+
T Consensus 142 tLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smR 215 (830)
T PRK07003 142 TLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMR 215 (830)
T ss_pred HHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8773 45678999999999999999988 87 488999999999999999888764332 22235667888776 567
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 399 DLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 399 dI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
+..+++.++..+ +...|+.+++...
T Consensus 216 dALsLLdQAia~----~~~~It~~~V~~~ 240 (830)
T PRK07003 216 DALSLTDQAIAY----SANEVTETAVSGM 240 (830)
T ss_pred HHHHHHHHHHHh----ccCCcCHHHHHHH
Confidence 777777666543 2345776666543
No 63
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.67 E-value=1.5e-15 Score=181.64 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=151.6
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEee
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 259 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs 259 (685)
+-++++++|+++..+ .++..|... ...+++|+||||||||++|+.+|..+ +..++.++
T Consensus 183 ~~~ld~~iGr~~ei~---~~i~~l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDEIR---QMIDILLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHHHH---HHHHHHhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 346899999998744 444433222 12379999999999999999999876 24577777
Q ss_pred ccchhh--hHhhhhhHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 260 GSEFEE--MFVGVGARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 260 ~s~l~~--~~~g~~~~~ir~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
.+.+.. .|.|+.+.+++.+|+.++. ..++|||||||+.+.+.+......... +-|+..+ .++.+.+|+||
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~---n~Lkp~l----~~G~l~~IgaT 323 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA---NLLKPAL----ARGELRTIAAT 323 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH---HHhhHHh----hCCCeEEEEec
Confidence 777653 5888899999999999865 468999999999998765433322222 2222222 35789999999
Q ss_pred CCcC-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-----cccHHHHHhcCCCCC-----HHHHH
Q 005661 337 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-----DVDLMIIARGTPGFS-----GADLA 401 (685)
Q Consensus 337 N~p~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-----~vdl~~la~~t~G~s-----gadI~ 401 (685)
+..+ .+|++|.| ||. .|.|+.|+.+++.+||+.+.+...... +..+..++..+.+|- +.--.
T Consensus 324 T~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAI 400 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAV 400 (852)
T ss_pred CHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHH
Confidence 9754 48999999 996 899999999999999877665543222 223455666665543 45566
Q ss_pred HHHHHHHHHHHHc-CCCccCHHHHHHHH
Q 005661 402 NLVNIAALKAAMD-GAKAVTMADLEYAK 428 (685)
Q Consensus 402 ~lv~~A~~~A~~~-~~~~It~edl~~A~ 428 (685)
.|+.+|+.....+ ....+..++++..+
T Consensus 401 dlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 401 SLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 7888887766543 33444555555443
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=99.67 E-value=2.1e-15 Score=170.73 Aligned_cols=207 Identities=25% Similarity=0.292 Sum_probs=145.5
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
..+.+|+||+|++++++.|++++..+.+ +.+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~- 78 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA- 78 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-
Confidence 4567899999999999999998875432 2347799999999999999999999999999999999875432
Q ss_pred hhhhhHHHHHHHHHHHh------CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc
Q 005661 268 VGVGARRVRDLFSAAKK------RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 341 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~------~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 341 (685)
..++.+...+.. ..+.||+|||+|.+.... ....++.|+..++ ..+..+|+++|.+..
T Consensus 79 -----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~----~~~~~iIli~n~~~~ 142 (482)
T PRK04195 79 -----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIK----KAKQPIILTANDPYD 142 (482)
T ss_pred -----HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHH----cCCCCEEEeccCccc
Confidence 122332222211 256799999999986421 1122344444444 233456677888887
Q ss_pred Ccc-cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q 005661 342 LDK-ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAV 419 (685)
Q Consensus 342 LD~-aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~I 419 (685)
+++ .|++ |+ ..|.|++|+.+++..+|+..+.+.... ++-.+..|+..+. +|++.+++.....+ .+...|
T Consensus 143 ~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~~a--~~~~~i 213 (482)
T PRK04195 143 PSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQAIA--EGYGKL 213 (482)
T ss_pred cchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHh--cCCCCC
Confidence 776 5554 44 579999999999999999988764332 1223556777654 48998888766533 355678
Q ss_pred CHHHHHHHH
Q 005661 420 TMADLEYAK 428 (685)
Q Consensus 420 t~edl~~A~ 428 (685)
+.+++....
T Consensus 214 t~~~v~~~~ 222 (482)
T PRK04195 214 TLEDVKTLG 222 (482)
T ss_pred cHHHHHHhh
Confidence 888886543
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.1e-15 Score=161.87 Aligned_cols=209 Identities=21% Similarity=0.222 Sum_probs=143.5
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe--------ec
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC--------SG 260 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v--------s~ 260 (685)
.+.+|+||+|++.+++.|+..+. ..+.|..+||+||||+|||++|+++|+.+.+..-.. +|
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~-----------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLS-----------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHH-----------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45689999999999998887765 234677899999999999999999999886421100 11
Q ss_pred cch--------hh--hHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 005661 261 SEF--------EE--MFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ 326 (685)
Q Consensus 261 s~l--------~~--~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~ 326 (685)
.++ .. .........++.+.+.+.. ....|++|||+|.+. ....+.||..++. .
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLLk~lEe--~ 146 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALLKTLEE--P 146 (363)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHHHHHhc--C
Confidence 111 00 0000123445666655432 234699999999873 2345677777774 3
Q ss_pred CCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHH
Q 005661 327 NEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVN 405 (685)
Q Consensus 327 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~ 405 (685)
...+.+|.+|+.++.+.+.+.+ |+ ..+.+++|+.++..++++..+++.... ++..+..++..+.| +.+++.++++
T Consensus 147 ~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~ 222 (363)
T PRK14961 147 PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLE 222 (363)
T ss_pred CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 4567777788888889888886 77 478999999999999999988765322 22235557777765 6777777776
Q ss_pred HHHHHHHHcCCCccCHHHHHHHHH
Q 005661 406 IAALKAAMDGAKAVTMADLEYAKD 429 (685)
Q Consensus 406 ~A~~~A~~~~~~~It~edl~~A~~ 429 (685)
.+... +...|+.+++.+++.
T Consensus 223 ~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 223 HAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHh----cCCCCCHHHHHHHHC
Confidence 65432 456799998887753
No 66
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=4.9e-15 Score=170.68 Aligned_cols=202 Identities=24% Similarity=0.333 Sum_probs=146.8
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC--------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 254 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------------- 254 (685)
.+.+|+||+|++.+++.|++.+.. .+.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 456899999999999988877762 3466679999999999999999999998763
Q ss_pred ----------EEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 255 ----------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 255 ----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
|+.++.+. ..+...+|++.+.+. .....|+||||+|.|. ....|.||..
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----------~~a~NALLKt 142 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----------HHHHHHHHHH
Confidence 22222221 012334565555443 2345699999999883 3467888888
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgad 399 (685)
|+. ....+++|.+|+.+..|.+.+++ |+ ..+.|.+++.++..+.|+..+....... +..+..|+..+.| +.++
T Consensus 143 LEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~ 216 (647)
T PRK07994 143 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRD 216 (647)
T ss_pred HHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 883 55678888889889999999888 76 6889999999999999998886543322 2335567777765 7777
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
..+++.++... +...|+.+++...+
T Consensus 217 Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 217 ALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 77888765432 33568888887654
No 67
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.64 E-value=1.4e-14 Score=159.50 Aligned_cols=224 Identities=22% Similarity=0.230 Sum_probs=151.9
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEeeccchh
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEFE 264 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs~s~l~ 264 (685)
....+.++|.++..++|...+..... ...|.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34457899999998888877753211 2335579999999999999999999876 5789999986543
Q ss_pred hh----------Hhh-------hh-hHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 005661 265 EM----------FVG-------VG-ARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK 325 (685)
Q Consensus 265 ~~----------~~g-------~~-~~~ir~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~ 325 (685)
.. +.+ .. ...+..+++.... ..+.||+|||+|.+.... ....+..|+..++...
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GNDVLYSLLRAHEEYP 170 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------CchHHHHHHHhhhccC
Confidence 21 111 01 1222333333332 456899999999986211 1234666666555433
Q ss_pred cCCCEEEEEecCCcC---cCcccccCCCCcc-cccccCCCCHHHHHHHHHHHhhhhcccCccc---HHHHHhcCCCC--C
Q 005661 326 QNEGIIVIAATNFPE---SLDKALVRPGRFD-RHIVVPNPDVEGRRQIMESHMSKVLKADDVD---LMIIARGTPGF--S 396 (685)
Q Consensus 326 ~~~~ViVIaaTN~p~---~LD~aLlRpgRFd-~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd---l~~la~~t~G~--s 396 (685)
..++.+|+++|..+ .+++.+.+ ||. ..|.|++++.++..+|++.++........++ ++.+++.+.+. .
T Consensus 171 -~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 -GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred -CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 23788899988764 46666655 553 4689999999999999999986432111222 44556655332 2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 397 GADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 397 gadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
.+.+.++|..|...|..++...|+.+|+..|++.+
T Consensus 248 ~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 248 ARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 34555888889889988888999999999999887
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.8e-15 Score=169.00 Aligned_cols=202 Identities=21% Similarity=0.292 Sum_probs=145.8
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC--------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 254 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------------- 254 (685)
.+.+|+||+|++.+++.|...+. ..+.+..+||+||||+|||++|+++|+.+++.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 45689999999999999988776 34567789999999999999999999998752
Q ss_pred ----------EEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 255 ----------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 255 ----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
++.+++++- .+...+|++...+. .....|+||||+|.|. ....+.|+..
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----------~~A~NALLKt 141 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----------THSFNALLKT 141 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHH
Confidence 233332211 12344666665542 2345799999999883 2346777777
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgad 399 (685)
|+. ...++.+|++|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+.+..... +..+..|++.+.| +.++
T Consensus 142 LEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRd 215 (702)
T PRK14960 142 LEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRD 215 (702)
T ss_pred Hhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 774 44667888888888888888876 77 4789999999999999999887654332 2235667777765 6777
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
+.+++..+... +...|+.+++...+
T Consensus 216 ALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 216 ALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 77777665432 45678988887653
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.64 E-value=1.2e-14 Score=161.46 Aligned_cols=200 Identities=28% Similarity=0.391 Sum_probs=139.4
Q ss_pred CCCCCcCCCcHHHHHH---HHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 190 NTKFSDVKGVDEAKQE---LEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~---L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
+.+|+|++|++..... |.+++.. ..+.++||+||||||||++|+++++..+.+|+.+++....
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~-- 73 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG-- 73 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc--
Confidence 4579999999999766 6665531 1233799999999999999999999999999999876432
Q ss_pred HhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC--CcC
Q 005661 267 FVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN--FPE 340 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN--~p~ 340 (685)
...++.+++.+. .....||||||+|.+. ....+.|+..++ ...+++|++|+ ...
T Consensus 74 -----~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le----~~~iilI~att~n~~~ 133 (413)
T PRK13342 74 -----VKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVE----DGTITLIGATTENPSF 133 (413)
T ss_pred -----HHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhh----cCcEEEEEeCCCChhh
Confidence 234555555553 2356899999999873 112344555444 24567776653 345
Q ss_pred cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-ccc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 005661 341 SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVD---LMIIARGTPGFSGADLANLVNIAALKAAMDGA 416 (685)
Q Consensus 341 ~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vd---l~~la~~t~G~sgadI~~lv~~A~~~A~~~~~ 416 (685)
.+++++++ |+ ..+.+++|+.++...+++..+....... .++ +..+++.+.| ..+.+.+++..+... .
T Consensus 134 ~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~-----~ 204 (413)
T PRK13342 134 EVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG-----V 204 (413)
T ss_pred hccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-----c
Confidence 78899998 88 5789999999999999998876532111 222 4456776644 555555666554432 4
Q ss_pred CccCHHHHHHHHHHHh
Q 005661 417 KAVTMADLEYAKDKIM 432 (685)
Q Consensus 417 ~~It~edl~~A~~~v~ 432 (685)
..|+.+++..++....
T Consensus 205 ~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 205 DSITLELLEEALQKRA 220 (413)
T ss_pred CCCCHHHHHHHHhhhh
Confidence 6799999999887643
No 70
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.5e-15 Score=167.62 Aligned_cols=203 Identities=19% Similarity=0.219 Sum_probs=146.7
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 254 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------- 254 (685)
+.+.+|+||+|++.+++.|+..+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 3456899999999999999887752 3566789999999999999999999988653
Q ss_pred -----------EEEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 255 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 255 -----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
++.++.+. ..+...+|++.+.+.. ....|+||||+|.+. ....|.||.
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----------~~a~naLLk 141 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----------GHSFNALLK 141 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----------HHHHHHHHH
Confidence 33333221 1233446666655432 234699999999883 234677888
Q ss_pred HhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHH
Q 005661 320 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGA 398 (685)
Q Consensus 320 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sga 398 (685)
.|+. ....+++|.+|+.+..+.+.+++ |+ ..++|.+++.++..+.++..+++....- +..+..+++.+.| +.+
T Consensus 142 ~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 8874 44568888888888888888887 77 4778999999998888888887654332 2235567777754 778
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 399 DLANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 399 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
++.+++..+..+ +...|+.+++...+
T Consensus 216 ~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 216 DALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 888888766433 34578888887653
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=9.7e-15 Score=164.90 Aligned_cols=212 Identities=22% Similarity=0.268 Sum_probs=151.4
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEE-----------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFF----------- 256 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi----------- 256 (685)
..+.+|+|++|++.+.+.|+..+. ..+.|.++||+||||||||++|+++|+.+++.--
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 456689999999999998887654 2456779999999999999999999999865211
Q ss_pred E-eeccchhhh----------HhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHh
Q 005661 257 S-CSGSEFEEM----------FVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVEL 321 (685)
Q Consensus 257 ~-vs~s~l~~~----------~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~l 321 (685)
. -+|..+.+. -...+...++.+++.+.. ....|++|||+|.+. ...++.|+..|
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----------~~a~naLLk~L 152 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----------KGAFNALLKTL 152 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------HHHHHHHHHHH
Confidence 0 011111110 001234567777777643 234699999999873 24467777777
Q ss_pred hccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCCHHHH
Q 005661 322 DGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGADL 400 (685)
Q Consensus 322 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~sgadI 400 (685)
+. ....+++|.+|+.++.+.+.+.+ |+ ..+.+.+++.++...+++..+++....-+ -.+..|+..+.| +.+++
T Consensus 153 Ee--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~a 226 (507)
T PRK06645 153 EE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDA 226 (507)
T ss_pred hh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 73 45678888888888899999887 77 46889999999999999999986543322 235668887765 88888
Q ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 401 ANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 401 ~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
.++++.+..++... ...||.+++...+
T Consensus 227 l~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 227 VSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 88888877665322 2468888887654
No 72
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.62 E-value=1.8e-14 Score=161.89 Aligned_cols=220 Identities=20% Similarity=0.324 Sum_probs=146.3
Q ss_pred CCCCCCCcC-CCcHH--HHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEee
Q 005661 188 ESNTKFSDV-KGVDE--AKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS 259 (685)
Q Consensus 188 ~~~~~f~dV-~G~de--~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs 259 (685)
.++.+|++. +|..+ +...++++.+ ++ .....+++||||||+|||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~---~~-------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAE---NP-------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHh---Cc-------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 456789994 45433 3333444332 22 1223469999999999999999999987 56789999
Q ss_pred ccchhhhHhhhhhHH-HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 260 GSEFEEMFVGVGARR-VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 260 ~s~l~~~~~g~~~~~-ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
+.+|...+....... ...+.+..+ .+.+|+|||+|.+.++. ..+. +++..++.....+..+||+++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~------~~~~---~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKE------RTQE---EFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCH------HHHH---HHHHHHHHHHHCCCcEEEECCCC
Confidence 988876654433221 222222222 46799999999885432 1122 22222232223344466666556
Q ss_pred cCc---CcccccCCCCccc--ccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005661 339 PES---LDKALVRPGRFDR--HIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAA 412 (685)
Q Consensus 339 p~~---LD~aLlRpgRFd~--~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~ 412 (685)
|.. +++.|.+ ||.. .+.+.+||.++|.+||+..+...... ++--++.|+....| +.++|..+++.....+.
T Consensus 255 p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 255 PKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYAS 331 (450)
T ss_pred HHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHH
Confidence 554 6688887 8864 78999999999999999999764322 12225667777764 78899999998877776
Q ss_pred HcCCCccCHHHHHHHHHHHh
Q 005661 413 MDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 413 ~~~~~~It~edl~~A~~~v~ 432 (685)
..+ ..||.+.+.+++..+.
T Consensus 332 ~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 332 LTG-KPITLELAKEALKDLL 350 (450)
T ss_pred hhC-CCCCHHHHHHHHHHhh
Confidence 655 5699999999998764
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.1e-14 Score=167.49 Aligned_cols=210 Identities=22% Similarity=0.294 Sum_probs=148.0
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEE--eecc----
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS--CSGS---- 261 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~--vs~s---- 261 (685)
+.+.+|+||+|++.+++.|+..+.. .++|.++||+||+|+|||++|+++|+.++++-.. ..|.
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 3566899999999999999887662 4567789999999999999999999988653110 0011
Q ss_pred --c--------hhhh--HhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 005661 262 --E--------FEEM--FVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK 325 (685)
Q Consensus 262 --~--------l~~~--~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~ 325 (685)
. +.+. -...+...+++++..+.. ....|+||||+|.+. ....+.||..|+.
T Consensus 79 Cr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLKtLEE-- 145 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLKTLEE-- 145 (709)
T ss_pred HHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHHHHHh--
Confidence 0 0000 011233457777765432 334799999999772 2346778888874
Q ss_pred cCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHHHHHHH
Q 005661 326 QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLV 404 (685)
Q Consensus 326 ~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgadI~~lv 404 (685)
....+.+|.+||.+..+.+.+++ |+ ..+.|+.++.++...+|+..+.+....- +-.+..|++.+.| +.+++.+++
T Consensus 146 Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLL 221 (709)
T PRK08691 146 PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLL 221 (709)
T ss_pred CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHH
Confidence 44667888888889888888875 77 4788899999999999999887654322 2225667777754 778888888
Q ss_pred HHHHHHHHHcCCCccCHHHHHHHHH
Q 005661 405 NIAALKAAMDGAKAVTMADLEYAKD 429 (685)
Q Consensus 405 ~~A~~~A~~~~~~~It~edl~~A~~ 429 (685)
..+..+ +...|+.+++...+.
T Consensus 222 Dqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 222 DQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHh----cCCCcCHHHHHHHHc
Confidence 776654 345688888876643
No 74
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.62 E-value=2.8e-14 Score=158.16 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=144.8
Q ss_pred CCCCCCCc-CCCcHHH--HHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEee
Q 005661 188 ESNTKFSD-VKGVDEA--KQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS 259 (685)
Q Consensus 188 ~~~~~f~d-V~G~de~--k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs 259 (685)
.++.+|++ ++|.++. ...++++. .++ .....+++||||||||||+|++++++++ +..+++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~---~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVA---ENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHH---hCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 45678999 5675543 22223322 222 1234579999999999999999999887 67899999
Q ss_pred ccchhhhHhhhhhH-HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 260 GSEFEEMFVGVGAR-RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 260 ~s~l~~~~~g~~~~-~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
+.+|...+...... .+..+....+ .+.+|+|||+|.+.++. ..+..+..++ +.....+..+||.++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~------~~~~~l~~~~---n~~~~~~~~iiits~~~ 242 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE------RTQEEFFHTF---NALHENGKQIVLTSDRP 242 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH------HHHHHHHHHH---HHHHHCCCCEEEecCCC
Confidence 98877654432211 1222222222 35799999999886432 1122222333 22222344566666555
Q ss_pred cCc---CcccccCCCCccc--ccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005661 339 PES---LDKALVRPGRFDR--HIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAA 412 (685)
Q Consensus 339 p~~---LD~aLlRpgRFd~--~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~ 412 (685)
|.. +++.+.+ ||.. .+.+++||.++|.+|++..+...... ++-.+..|+....+ +.++|..+++.....|.
T Consensus 243 p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 243 PKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYAS 319 (405)
T ss_pred HHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 654 5577776 8864 68999999999999999999765332 22225567877654 78999999998877776
Q ss_pred HcCCCccCHHHHHHHHHHHh
Q 005661 413 MDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 413 ~~~~~~It~edl~~A~~~v~ 432 (685)
..+ ..||.+.+.+++...+
T Consensus 320 ~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 320 LTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HhC-CCCCHHHHHHHHHHhc
Confidence 544 6699999999987654
No 75
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.62 E-value=4.2e-15 Score=178.17 Aligned_cols=167 Identities=22% Similarity=0.354 Sum_probs=128.1
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEee
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 259 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs 259 (685)
+-++++|+|.+...+.+.+++. .. ...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~---r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQ---RR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHh---cC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3468999999986444444432 22 12379999999999999999999987 77889988
Q ss_pred ccchh--hhHhhhhhHHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 260 GSEFE--EMFVGVGARRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 260 ~s~l~--~~~~g~~~~~ir~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
.+.+. .+|.|..+.+++.+|..+. ...|+||||||+|.|.+.+...+.......+... -.++.+.+|++|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~-------l~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA-------LARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcch-------hhcCCCeEEEcC
Confidence 88776 4588889999999998864 3578999999999998765433322222333222 245789999999
Q ss_pred CCcC-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhc
Q 005661 337 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL 378 (685)
Q Consensus 337 N~p~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~ 378 (685)
+..+ .+|+++.| ||+ .|.++.|+.+++..||+.+...+.
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 9887 38999999 997 688999999999999988776543
No 76
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.5e-14 Score=169.28 Aligned_cols=208 Identities=20% Similarity=0.259 Sum_probs=143.9
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCE-------EEe-ec
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF-------FSC-SG 260 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~f-------i~v-s~ 260 (685)
.+.+|+||+|++.+++.|++.+. ..++|..+||+||||||||++|+++|+.+++.- ..+ +|
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~-----------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALT-----------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 45689999999999999887765 235577789999999999999999999987641 111 01
Q ss_pred cchhhh-------Hh---hhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 005661 261 SEFEEM-------FV---GVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ 326 (685)
Q Consensus 261 s~l~~~-------~~---g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~ 326 (685)
-.+... +- ..+...+|++.+.+. .....|+||||+|.|. ...++.||..|+. .
T Consensus 80 ~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLEE--P 146 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLEE--P 146 (944)
T ss_pred HHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHhc--c
Confidence 111100 00 012234555555443 2334699999999883 4567888888884 4
Q ss_pred CCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHHHHHHHH
Q 005661 327 NEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVN 405 (685)
Q Consensus 327 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgadI~~lv~ 405 (685)
..++++|++|+.+..|.+.+++ |+ .++.|.+++.++..+.|++.+....... +-.+..|++.+.| +.+++.+++.
T Consensus 147 P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLd 222 (944)
T PRK14949 147 PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTD 222 (944)
T ss_pred CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 5677888888888889888887 76 4789999999999999998887643221 1225567777765 6778888887
Q ss_pred HHHHHHHHcCCCccCHHHHHHHH
Q 005661 406 IAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 406 ~A~~~A~~~~~~~It~edl~~A~ 428 (685)
++... +...++.+++...+
T Consensus 223 Qala~----~~~~It~~~V~~ll 241 (944)
T PRK14949 223 QAIAF----GGGQVMLTQVQTML 241 (944)
T ss_pred HHHHh----cCCcccHHHHHHHh
Confidence 76632 33457777665543
No 77
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.61 E-value=1.4e-14 Score=154.89 Aligned_cols=203 Identities=21% Similarity=0.287 Sum_probs=134.3
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
..+.+|+|++|++++++.++.++. ....|..+||+||||+|||++|++++++.+.+++.+++++ ..
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~-- 80 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR-- 80 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc--
Confidence 456789999999999998888775 2345667888999999999999999999999999999887 21
Q ss_pred hhhhhHHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 268 VGVGARRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
.......+........ ...+.+|+|||+|.+.. ......+..+ ++. ...++.+|++||.++.+++++
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~---le~--~~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSF---MEA--YSKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHH---HHh--cCCCceEEEEcCChhhchHHH
Confidence 1111111222111111 13578999999998731 1122333333 343 235678888999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhc---c--cCccc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL---K--ADDVD---LMIIARGTPGFSGADLANLVNIAALKAAMDGAKA 418 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~---~--~~~vd---l~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~ 418 (685)
++ ||. .+.++.|+.+++.++++.++.... . ...++ +..++.... .|++.+++.....+. ...
T Consensus 149 ~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~----~d~r~~l~~l~~~~~---~~~ 218 (316)
T PHA02544 149 RS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF----PDFRRTINELQRYAS---TGK 218 (316)
T ss_pred Hh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC----CCHHHHHHHHHHHHc---cCC
Confidence 98 885 789999999999988877654321 1 11222 244454433 356666655544432 245
Q ss_pred cCHHHHHH
Q 005661 419 VTMADLEY 426 (685)
Q Consensus 419 It~edl~~ 426 (685)
++.+++..
T Consensus 219 i~~~~l~~ 226 (316)
T PHA02544 219 IDAGILSE 226 (316)
T ss_pred CCHHHHHH
Confidence 67666544
No 78
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.60 E-value=3.7e-14 Score=152.53 Aligned_cols=208 Identities=23% Similarity=0.242 Sum_probs=134.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC-----CCEEEeeccc
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCSGSE 262 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~-----~~fi~vs~s~ 262 (685)
..+.+|++++|++++++.|..++.. ... .++||+||||||||++|+++++++. .+++.+++++
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDS-----------PNL-PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhC-----------CCC-ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 3456799999999999988877651 112 2699999999999999999999873 4578888877
Q ss_pred hhhhH-------------hhh-------hhHHHHHHHHHHHh-----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHH
Q 005661 263 FEEMF-------------VGV-------GARRVRDLFSAAKK-----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQL 317 (685)
Q Consensus 263 l~~~~-------------~g~-------~~~~ir~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~L 317 (685)
+.... .+. ....++.+...... ..+.+|+|||+|.+.. .. .+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------~~---~~~L 145 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------DA---QQAL 145 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------HH---HHHH
Confidence 54221 011 11223333333222 2346999999998731 12 2334
Q ss_pred HHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCC
Q 005661 318 LVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFS 396 (685)
Q Consensus 318 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~s 396 (685)
...++... ....+|.+++.+..+.+.|.+ |+ ..+.+++|+.++..++++..+.+.... .+-.+..++..+.
T Consensus 146 ~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~--- 217 (337)
T PRK12402 146 RRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG--- 217 (337)
T ss_pred HHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---
Confidence 44444332 234455566666677777776 65 478999999999999999988765432 2223556676663
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005661 397 GADLANLVNIAALKAAMDGAKAVTMADLEYAKD 429 (685)
Q Consensus 397 gadI~~lv~~A~~~A~~~~~~~It~edl~~A~~ 429 (685)
+|++.+++.....+ . ....||.+|+.+++.
T Consensus 218 -gdlr~l~~~l~~~~-~-~~~~It~~~v~~~~~ 247 (337)
T PRK12402 218 -GDLRKAILTLQTAA-L-AAGEITMEAAYEALG 247 (337)
T ss_pred -CCHHHHHHHHHHHH-H-cCCCCCHHHHHHHhC
Confidence 46666666555444 2 234799999987653
No 79
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=2.9e-14 Score=159.52 Aligned_cols=222 Identities=16% Similarity=0.265 Sum_probs=143.4
Q ss_pred CCCCCCCcCC-CcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEeecc
Q 005661 188 ESNTKFSDVK-GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGS 261 (685)
Q Consensus 188 ~~~~~f~dV~-G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs~s 261 (685)
.+..+|++.+ |..+. ...........++. . ..+++||||||+|||+|++++++++ +..++++++.
T Consensus 99 ~~~~tFdnFv~g~~n~-~a~~~~~~~~~~~~-------~-~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 99 NPDYTFENFVVGPGNS-FAYHAALEVAKNPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCCCcccccccCCchH-HHHHHHHHHHhCcC-------C-CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 4678899976 64433 22222323222321 1 3469999999999999999999976 4678899998
Q ss_pred chhhhHhhhhh-HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 262 EFEEMFVGVGA-RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 262 ~l~~~~~g~~~-~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
+|...+..... ..+.. |.......+.+|+|||++.+.++. ..+ .+++..++.+......+||++.+.|.
T Consensus 170 ~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~------~~q---~elf~~~n~l~~~~k~iIitsd~~p~ 239 (440)
T PRK14088 170 KFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT------GVQ---TELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_pred HHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH------HHH---HHHHHHHHHHHHcCCeEEEECCCCHH
Confidence 87766543221 12222 332223457899999999885431 111 12222222222334456666656666
Q ss_pred c---CcccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005661 341 S---LDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 414 (685)
Q Consensus 341 ~---LD~aLlRpgRFd--~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 414 (685)
. +++.+.+ ||. ..+.+.+||.+.|.+|++..+...... ++--+..|+....| +.++|..+++.....+...
T Consensus 240 ~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~ 316 (440)
T PRK14088 240 KLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT 316 (440)
T ss_pred HHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh
Confidence 5 4566776 774 466899999999999999998753222 11125567777764 7889999998876666655
Q ss_pred CCCccCHHHHHHHHHHHh
Q 005661 415 GAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 415 ~~~~It~edl~~A~~~v~ 432 (685)
+ ..||.+...+++..++
T Consensus 317 ~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 317 G-EEVDLKEAILLLKDFI 333 (440)
T ss_pred C-CCCCHHHHHHHHHHHh
Confidence 5 6699999999988764
No 80
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.60 E-value=4.3e-14 Score=163.12 Aligned_cols=213 Identities=19% Similarity=0.229 Sum_probs=143.8
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCe-EEEEcCCCCChHHHHHHHHHhc----------CCCEEEeeccc
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKG-VLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSGSE 262 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkg-vLL~GPPGTGKT~LAralA~e~----------~~~fi~vs~s~ 262 (685)
+.|+|.++.+++|..++..... + ..|.+ ++|+|+||||||++++.+.+++ .+.+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 6799999999988887775211 1 22334 5699999999999999998765 25678999965
Q ss_pred hhhhH---h-------------h-hhhHHHHHHHHHHH--hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc
Q 005661 263 FEEMF---V-------------G-VGARRVRDLFSAAK--KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG 323 (685)
Q Consensus 263 l~~~~---~-------------g-~~~~~ir~lF~~A~--~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~ 323 (685)
+...+ . | .....+..+|.... .....||+|||||.|..+ .+.+|..|+....
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--------~QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--------TQKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--------HHHHHHHHHHHhh-
Confidence 43321 0 1 11234556666542 234579999999999643 2355666666543
Q ss_pred cccCCCEEEEEecCC---cCcCcccccCCCCccc-ccccCCCCHHHHHHHHHHHhhhhcccCccc---HHHHHhcCCCCC
Q 005661 324 FKQNEGIIVIAATNF---PESLDKALVRPGRFDR-HIVVPNPDVEGRRQIMESHMSKVLKADDVD---LMIIARGTPGFS 396 (685)
Q Consensus 324 ~~~~~~ViVIaaTN~---p~~LD~aLlRpgRFd~-~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd---l~~la~~t~G~s 396 (685)
.....++||+++|. ++.|++.+.+ ||.. .|.|++++.+++.+||+..+.... ..++ +..+|+... ..
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~--gVLdDdAIELIArkVA-q~ 971 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCK--EIIDHTAIQLCARKVA-NV 971 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHhhh-hc
Confidence 23467999999996 4567788876 6543 478899999999999999987631 1222 444555433 22
Q ss_pred HHHHH---HHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005661 397 GADLA---NLVNIAALKAAMDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 397 gadI~---~lv~~A~~~A~~~~~~~It~edl~~A~~~v~ 432 (685)
.+|++ ++|+.|+.. .+...|+.+|+.+|..++.
T Consensus 972 SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 972 SGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred CCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 34666 555555543 3456899999999998774
No 81
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.60 E-value=1.4e-14 Score=174.04 Aligned_cols=202 Identities=22% Similarity=0.323 Sum_probs=145.9
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEeec
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSG 260 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs~ 260 (685)
-+++.++|.++..+.+.+++. . +...+++|+||||||||++++++|..+ +.+++.++.
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLS---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 468899999986554444432 2 123478999999999999999999876 678888887
Q ss_pred cchh--hhHhhhhhHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 261 SEFE--EMFVGVGARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 261 s~l~--~~~~g~~~~~ir~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
+.+. ..|.|..+.+++.+|..+.. ..|+||||||||.|.+.+...+... ..+-|.. +-..+.+.+|++|+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d---~~~~Lk~----~l~~g~i~~IgaTt 310 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD---AGNMLKP----ALARGELHCIGATT 310 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH---HHHHhch----hhhcCceEEEEeCc
Confidence 7765 45888889999999998865 4689999999999986543332221 1222222 22456799999999
Q ss_pred CcC-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcc-----cHHHHHhcCCCC-----CHHHHHH
Q 005661 338 FPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV-----DLMIIARGTPGF-----SGADLAN 402 (685)
Q Consensus 338 ~p~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~v-----dl~~la~~t~G~-----sgadI~~ 402 (685)
..+ .+|+++.| ||. .|.++.|+.+++..||+.+..++.....+ .+..++..+.+| -|.--..
T Consensus 311 ~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAid 387 (852)
T TIGR03346 311 LDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAID 387 (852)
T ss_pred HHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHH
Confidence 774 47999999 996 58999999999999999887776544333 233445554443 3455668
Q ss_pred HHHHHHHHHHHc
Q 005661 403 LVNIAALKAAMD 414 (685)
Q Consensus 403 lv~~A~~~A~~~ 414 (685)
|+++|+..+...
T Consensus 388 lld~a~a~~~~~ 399 (852)
T TIGR03346 388 LIDEAAARIRME 399 (852)
T ss_pred HHHHHHHHHHhh
Confidence 888888766543
No 82
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.60 E-value=1.9e-14 Score=172.36 Aligned_cols=201 Identities=22% Similarity=0.308 Sum_probs=146.6
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEeec
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSG 260 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs~ 260 (685)
-.|++|+|.++.++.+.+++. .+.+.+++|+||||||||++|+.+|..+ +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 458899999999887776653 2234589999999999999999999976 478999998
Q ss_pred cchh--hhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 261 SEFE--EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 261 s~l~--~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
+.+. .+|.|+.+.+++.+|+.++...++||||||||.+.+.+...........+... + .++.+.+|++|+.
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~---l----~rg~l~~IgaTt~ 316 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPA---L----ARGELQCIGATTL 316 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHH---H----hCCCcEEEEeCCH
Confidence 8776 45889899999999999988889999999999998765433222222222222 2 3567999999997
Q ss_pred cC-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc----c-CcccHHHHHhcCCCCC-----HHHHHHH
Q 005661 339 PE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK----A-DDVDLMIIARGTPGFS-----GADLANL 403 (685)
Q Consensus 339 p~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~----~-~~vdl~~la~~t~G~s-----gadI~~l 403 (685)
.+ ..|++|.+ ||. .|.++.|+.++...|++........ . .+-.+..++..+.+|. |.-.-.+
T Consensus 317 ~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidl 393 (821)
T CHL00095 317 DEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDL 393 (821)
T ss_pred HHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHH
Confidence 64 47899999 997 5799999999999999876543211 1 1112444555555443 4455577
Q ss_pred HHHHHHHHHH
Q 005661 404 VNIAALKAAM 413 (685)
Q Consensus 404 v~~A~~~A~~ 413 (685)
+.+|+.....
T Consensus 394 ld~a~a~~~~ 403 (821)
T CHL00095 394 LDEAGSRVRL 403 (821)
T ss_pred HHHHHHHHHh
Confidence 7777766544
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.1e-14 Score=161.20 Aligned_cols=202 Identities=19% Similarity=0.240 Sum_probs=148.9
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC---------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV--------------- 253 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~--------------- 253 (685)
.+.+|+||+|++.+++.|++.+. ..+.|.++||+||||+|||++|+.+|+.+++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 45689999999999998886655 2466889999999999999999999987643
Q ss_pred ---------CEEEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 254 ---------PFFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 254 ---------~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
.++.+++++- .+...+|++.+.+.. ....|++|||+|.+. ...+|.|+..
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-----------~~A~NaLLK~ 139 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-----------NSAFNALLKT 139 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-----------HHHHHHHHHH
Confidence 2344444321 233457777666542 234699999999873 3456788888
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgad 399 (685)
|+. +.+.+++|.+|+.++.+.+.+++ |+. .+.|.+++.++..+.++..+.+.... ++-.+..|++.+.| +.++
T Consensus 140 LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~ 213 (491)
T PRK14964 140 LEE--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRN 213 (491)
T ss_pred HhC--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 884 45678888888888889998887 774 68999999999999999888765432 22335667777765 7788
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
+.+++..+..+. ...||.+++...+
T Consensus 214 alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 214 ALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred HHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 888888766543 2479999987654
No 84
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.6e-14 Score=161.85 Aligned_cols=202 Identities=24% Similarity=0.303 Sum_probs=142.1
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 254 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------- 254 (685)
..+.+|+||+|++.+++.|+..+.. .+.|..+||+||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 3456899999999999999888763 3456678999999999999999999988541
Q ss_pred ----------EEEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 255 ----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 255 ----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
++.++.+. ..+...+|++...+.. ..+.||+|||+|.+. ...++.|+..
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLLk~ 139 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALLKT 139 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHHHH
Confidence 33333321 1123445665444432 346799999999762 3456778887
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgad 399 (685)
|+. ....+++|.+||.+..+.+.+.+ |+. .+.|++|+.++..+.++..+.+....- +-.+..|+..+.| +.++
T Consensus 140 LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~ 213 (504)
T PRK14963 140 LEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRD 213 (504)
T ss_pred HHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 774 34567888888989999999887 764 789999999999999999887654322 2235567777654 4455
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
+.++++.+.. . ...||.+++...+
T Consensus 214 aln~Lekl~~---~--~~~It~~~V~~~l 237 (504)
T PRK14963 214 AESLLERLLA---L--GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHHh---c--CCCCCHHHHHHHH
Confidence 5555554422 2 3479999887765
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=99.59 E-value=3.6e-14 Score=152.50 Aligned_cols=200 Identities=20% Similarity=0.200 Sum_probs=132.9
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC-----CCEEEeeccc
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCSGSE 262 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~-----~~fi~vs~s~ 262 (685)
..+.+|+||+|++++++.|+.++.. ...| ++||+||||||||++|+++|+++. ..++.++.++
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARD-----------GNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 4567899999999999988876552 2233 599999999999999999999973 2356666655
Q ss_pred hhhhHhhhhhHHHHHHHHHH-H------hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEe
Q 005661 263 FEEMFVGVGARRVRDLFSAA-K------KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA 335 (685)
Q Consensus 263 l~~~~~g~~~~~ir~lF~~A-~------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 335 (685)
... ...+++..... . ...+.|++|||+|.+.. ...+.|+..|+.+. ....+|.+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----------~aq~aL~~~lE~~~--~~t~~il~ 135 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----------GAQQALRRTMEIYS--NTTRFALA 135 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------HHHHHHHHHHhccc--CCceEEEE
Confidence 321 11233332221 1 12357999999998841 12344555555332 34557778
Q ss_pred cCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005661 336 TNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 414 (685)
Q Consensus 336 TN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 414 (685)
||.+..+.++|++ |+ ..+.|++|+.++...+++..+++.... .+-.+..++....| |++.+++.-...+ .
T Consensus 136 ~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq~~~--~ 206 (319)
T PLN03025 136 CNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQATH--S 206 (319)
T ss_pred eCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHH--h
Confidence 8888888888987 76 478999999999999999888764332 22235556665543 6776666544222 2
Q ss_pred CCCccCHHHHHHH
Q 005661 415 GAKAVTMADLEYA 427 (685)
Q Consensus 415 ~~~~It~edl~~A 427 (685)
+...|+.+++...
T Consensus 207 ~~~~i~~~~v~~~ 219 (319)
T PLN03025 207 GFGFVNQENVFKV 219 (319)
T ss_pred cCCCCCHHHHHHH
Confidence 3456888887643
No 86
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.7e-14 Score=163.10 Aligned_cols=203 Identities=20% Similarity=0.266 Sum_probs=145.6
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 254 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------- 254 (685)
+.+.+|+||+|++.+++.|++.+. ..+.|..+||+||+|+|||++|+++|+.+++.
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~-----------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALT-----------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 345689999999999998888776 23556789999999999999999999988651
Q ss_pred ----------------EEEeeccchhhhHhhhhhHHHHHHHHHHHhC----CCeEEEEcCchhhcCCCCCCchHHHHHHH
Q 005661 255 ----------------FFSCSGSEFEEMFVGVGARRVRDLFSAAKKR----SPCIIFIDEIDAIGGSRNPKDQQYMKMTL 314 (685)
Q Consensus 255 ----------------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~l 314 (685)
++.++.+. ..+...+|++.+.+... ...|++|||+|.|. ....
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-----------~~a~ 141 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-----------NTAF 141 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-----------HHHH
Confidence 12222111 11234567776665322 23699999999883 3346
Q ss_pred HHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCC
Q 005661 315 NQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTP 393 (685)
Q Consensus 315 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~ 393 (685)
|.||..|+. ....+++|.+|+.+..+.+.+++ |+ .++.|..++.++..+.|+..+.+.....+ -.+..|++.+.
T Consensus 142 NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778887773 45677888888888888888887 76 57899999999999999988876543322 23566777776
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 394 GFSGADLANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 394 G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
| +.+++.+++.++..+ +...|+.+++...+
T Consensus 217 G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 217 G-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 5 777777777665543 34578888887654
No 87
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=4.5e-14 Score=162.13 Aligned_cols=202 Identities=23% Similarity=0.305 Sum_probs=146.9
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC--------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 254 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------------- 254 (685)
.+.+|+||+|++.+++.|++.+.. .+.+..+||+||+|||||++|+.+|+.++++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 456899999999999999887763 3456689999999999999999999987542
Q ss_pred ----------EEEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 255 ----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 255 ----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
++.++++. +.+...+|++...+.. ....|++|||+|.|. ....+.|+..
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----------~~a~naLLKt 142 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----------TGAFNALLKT 142 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHHH
Confidence 22232211 1234557777776542 234699999999883 3357788888
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~sgad 399 (685)
|+. +...+++|.+|+.++.+.+.+++ |+. .+.|++|+.++...+++..+++....-+ -.+..++....| +.++
T Consensus 143 LEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~ 216 (559)
T PRK05563 143 LEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRD 216 (559)
T ss_pred hcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 874 45677888888889999999887 775 6789999999999999998876543222 235567777765 7777
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
+.+++..+..+. ...|+.+|+...+
T Consensus 217 al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 217 ALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 778877665542 3568888876653
No 88
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.6e-14 Score=162.40 Aligned_cols=203 Identities=21% Similarity=0.277 Sum_probs=140.4
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 254 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------- 254 (685)
..+.+|+||+|++.+++.|++.+.. .+.+..+||+||||||||++|+.+|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 3456899999999999999887762 3445689999999999999999999998653
Q ss_pred -----------EEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 255 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 255 -----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
++.+++.. ..+...++.+.+.+. .....||||||+|.|. ....+.|+.
T Consensus 79 C~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLLk 141 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALLK 141 (624)
T ss_pred HHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHHH
Confidence 33333211 011223343332221 2345799999999883 334677888
Q ss_pred HhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHH
Q 005661 320 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 398 (685)
Q Consensus 320 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sga 398 (685)
.|+. ....+++|++||.++.+.+.+++ |+. +|.|++++.++..++|+..+.+.... .+-.+..|+..+.| +.+
T Consensus 142 ~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR 215 (624)
T PRK14959 142 TLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVR 215 (624)
T ss_pred Hhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 7774 34578888889888888888887 774 78999999999999998887654332 22225556776654 445
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 399 DLANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 399 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
++.+++.++ + ..+...|+.+++..++
T Consensus 216 ~Al~lLeql---l-~~g~~~It~d~V~~~l 241 (624)
T PRK14959 216 DSMSLLGQV---L-ALGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHH---H-HhcCCCcCHHHHHHHh
Confidence 555555543 2 2355689999998776
No 89
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.58 E-value=5.5e-14 Score=152.45 Aligned_cols=203 Identities=24% Similarity=0.333 Sum_probs=143.2
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC--------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 254 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------------- 254 (685)
.+.+|+||+|++++++.|.+.+.. .+.|..+||+||||+|||++|+++++.+.++
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 457899999999999998877652 3456789999999999999999999987532
Q ss_pred ----------EEEeeccchhhhHhhhhhHHHHHHHHHHHhC----CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 255 ----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKKR----SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 255 ----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
++.+++.. ..+...++.+++.+... ...|++|||+|.+. ....+.|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll~~ 140 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALLKT 140 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHHHH
Confidence 22222211 11233467777766432 33699999999873 2346777777
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgad 399 (685)
++. ....+++|.+||.++.+.+.+.+ |+. .+++++|+.++..++++.++++....- +-.+..++..+.| +.+.
T Consensus 141 le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~ 214 (355)
T TIGR02397 141 LEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRD 214 (355)
T ss_pred HhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHH
Confidence 764 34567778888888888888887 774 789999999999999999987654321 1224456666654 6666
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAKD 429 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~~ 429 (685)
+.+.++.+.... + ..|+.+|+.+++.
T Consensus 215 a~~~lekl~~~~---~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 215 ALSLLDQLISFG---N-GNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHhhc---C-CCCCHHHHHHHhC
Confidence 666666555432 2 4599999987653
No 90
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.2e-14 Score=162.25 Aligned_cols=203 Identities=20% Similarity=0.268 Sum_probs=145.4
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCE-------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF------------- 255 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~f------------- 255 (685)
.+.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+.+|+.+++..
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 456899999999999988877762 34566899999999999999999999986521
Q ss_pred -----------EEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 256 -----------FSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 256 -----------i~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
+.++++. ..+...+|++...+.. ....|+||||+|.+. ....|.||..
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHHHH
Confidence 1111110 1223456777766532 234699999999883 3456788888
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgad 399 (685)
|+. ....+++|.+|+.++.+.+.+++ |+ ..+.|+.++.++..+.++..+.+..... +..+..+++.+.| +.++
T Consensus 143 LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~ 216 (527)
T PRK14969 143 LEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRD 216 (527)
T ss_pred HhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 874 45677888888888888877776 76 5889999999999998888886543322 2224556777654 6777
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAKD 429 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~~ 429 (685)
+.+++..+..+ +...|+.+++...+.
T Consensus 217 al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 217 ALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 77888776543 456788888876543
No 91
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.58 E-value=5.9e-14 Score=142.50 Aligned_cols=205 Identities=18% Similarity=0.214 Sum_probs=132.6
Q ss_pred CCCCCCcCC--CcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccch
Q 005661 189 SNTKFSDVK--GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEF 263 (685)
Q Consensus 189 ~~~~f~dV~--G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l 263 (685)
...+|++.+ +.+.+.+.+++++. ...+.+++|+||||||||++|+++++++ +.++++++|+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 346788876 35556666665543 1335689999999999999999999876 578999999887
Q ss_pred hhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 264 EEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 264 ~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
.... ..++.... .+.+|+|||+|.+... ......+..++..+. .....+|+.++..+..++
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~------~~~~~~L~~~l~~~~---~~~~~iIits~~~~~~~~ 138 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQ------PEWQEALFHLYNRVR---EAGGRLLIAGRAAPAQLP 138 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCC------hHHHHHHHHHHHHHH---HcCCeEEEECCCChHHCC
Confidence 6432 23333322 2459999999988432 111233444443322 222334444443443332
Q ss_pred ---ccccCCCCc--ccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 005661 344 ---KALVRPGRF--DRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGADLANLVNIAALKAAMDGAK 417 (685)
Q Consensus 344 ---~aLlRpgRF--d~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~ 417 (685)
+.|.+ || ...+.+|+|+.+++..+++.++.+....-+ --+..|+.. .+-+.+++.++++++...+...+ .
T Consensus 139 ~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~-~ 214 (226)
T TIGR03420 139 LRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAAK-R 214 (226)
T ss_pred cccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-C
Confidence 56665 55 468899999999999999988765432211 124556775 44588999999998876555544 5
Q ss_pred ccCHHHHHHHH
Q 005661 418 AVTMADLEYAK 428 (685)
Q Consensus 418 ~It~edl~~A~ 428 (685)
.|+.+.+.+.+
T Consensus 215 ~i~~~~~~~~~ 225 (226)
T TIGR03420 215 KITIPFVKEVL 225 (226)
T ss_pred CCCHHHHHHHh
Confidence 78888777654
No 92
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=5.4e-14 Score=166.74 Aligned_cols=204 Identities=22% Similarity=0.225 Sum_probs=142.0
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 254 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------- 254 (685)
+.+.+|+||+|++.+++.|+..+. ..+++..+||+||+|||||++|+.||+.+.+.
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~-----------~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 345689999999999999888765 24566689999999999999999999998652
Q ss_pred -------------EEEeeccchhhhHhhhhhHHHHHHHHHH----HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHH
Q 005661 255 -------------FFSCSGSEFEEMFVGVGARRVRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQL 317 (685)
Q Consensus 255 -------------fi~vs~s~l~~~~~g~~~~~ir~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~L 317 (685)
|+.++.... .+...+|++-+.+ ......|+||||+|.|. ....|.|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----------~~a~NaL 140 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----------PQGFNAL 140 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----------HHHHHHH
Confidence 122221110 1223344443332 22345799999999983 3456788
Q ss_pred HHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCC
Q 005661 318 LVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFS 396 (685)
Q Consensus 318 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~s 396 (685)
|+.|+. ....+++|++|+.++.|-+.|++ |+ .++.|..++.++..++|+..+++.....+ ..+..|++...| +
T Consensus 141 LK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 141 LKIVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHHHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 888874 44677888888888888888887 76 47899999999999999888866543222 224456666654 6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 397 GADLANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 397 gadI~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
.+++.++++.... ..+...|+.+++...+
T Consensus 215 lR~Al~eLEKLia---~~~~~~IT~e~V~all 243 (824)
T PRK07764 215 VRDSLSVLDQLLA---GAGPEGVTYERAVALL 243 (824)
T ss_pred HHHHHHHHHHHHh---hcCCCCCCHHHHHHHh
Confidence 6777777766442 2245568888887543
No 93
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=8.1e-14 Score=158.47 Aligned_cols=203 Identities=20% Similarity=0.259 Sum_probs=140.7
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC---------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV--------------- 253 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~--------------- 253 (685)
.+.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+.+|+.+.+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 456899999999999988877652 345667999999999999999999998764
Q ss_pred ---------CEEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 254 ---------PFFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 254 ---------~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
.++.++... ..+...++.+.+.+. .....|+||||+|.+. ....+.||..
T Consensus 80 ~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----------~~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----------KQSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------HHHHHHHHHH
Confidence 122222211 112234455555443 2345699999999883 3456788888
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgad 399 (685)
|+. ..+.+++|++|+.+..+.+.+++ |+ ..++|.+++.++....++..+.+..... +-.+..++..+.| +.++
T Consensus 143 LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~ 216 (546)
T PRK14957 143 LEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRD 216 (546)
T ss_pred Hhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 874 44667777777778888878877 77 5889999999999998888887643322 2234556766653 6666
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAKD 429 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~~ 429 (685)
+.+++..+.... + ..|+.+++.+++.
T Consensus 217 alnlLek~i~~~---~-~~It~~~V~~~l~ 242 (546)
T PRK14957 217 ALSLLDQAISFC---G-GELKQAQIKQMLG 242 (546)
T ss_pred HHHHHHHHHHhc---c-CCCCHHHHHHHHc
Confidence 666666555332 2 5688888887543
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=3.6e-14 Score=156.20 Aligned_cols=184 Identities=22% Similarity=0.327 Sum_probs=128.2
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCE----------------
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF---------------- 255 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~f---------------- 255 (685)
.|++|+|++.+++.|++.+..-++ .+...+.+.|.++||+||||+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999999885332 24445667889999999999999999999999775431
Q ss_pred -------EEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc
Q 005661 256 -------FSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF 324 (685)
Q Consensus 256 -------i~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~ 324 (685)
..+.... ...+...+|++++.+.. ....|+||||+|.+. ....|.||..|+.
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~LEe- 143 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAVEE- 143 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHhhc-
Confidence 1111110 01223457888877753 234699999999983 2335778888874
Q ss_pred ccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHH
Q 005661 325 KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLAN 402 (685)
Q Consensus 325 ~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~ 402 (685)
+..++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..++|.... .. .......++..+.|..+..+.-
T Consensus 144 -p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 -PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred -CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 34455666666668999999998 77 589999999999887776322 11 1223446777888766655443
No 95
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=7.7e-14 Score=159.90 Aligned_cols=202 Identities=20% Similarity=0.220 Sum_probs=141.8
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC--------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 254 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------------- 254 (685)
.+.+|+||+|++.+++.|+..+. ..+.|..+||+||+|||||++|+++|+.+++.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~-----------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALD-----------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 45689999999999999888775 24567779999999999999999999988642
Q ss_pred ------------EEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHH
Q 005661 255 ------------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLL 318 (685)
Q Consensus 255 ------------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL 318 (685)
++.++++.. .+...+|++.+.+. .....|++|||+|.+. ....|.||
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----------~~A~NALL 139 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----------TAGFNALL 139 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------HHHHHHHH
Confidence 222222110 12334555544432 2334699999999883 23677888
Q ss_pred HHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCCH
Q 005661 319 VELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSG 397 (685)
Q Consensus 319 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~sg 397 (685)
..|+. ....+++|.+|+.++.|.+.+++ |. .++.|..++.++..+.++.++++....-+ ..+..+++... -+.
T Consensus 140 K~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-Gdl 213 (584)
T PRK14952 140 KIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-GSP 213 (584)
T ss_pred HHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Confidence 88883 55678888888888999999987 75 47899999999999999888876543222 22444566554 467
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 398 ADLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 398 adI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
+++.++++..... .+...|+.+++...
T Consensus 214 R~aln~Ldql~~~---~~~~~It~~~v~~l 240 (584)
T PRK14952 214 RDTLSVLDQLLAG---AADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHHHhc---cCCCCcCHHHHHHH
Confidence 7777777765433 23457888777655
No 96
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.56 E-value=1.9e-13 Score=158.56 Aligned_cols=314 Identities=22% Similarity=0.243 Sum_probs=171.7
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEee
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 259 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs 259 (685)
+.+|++++|++...+.+...+. . ..|..++|+||||||||++|+++++.. +.+|+.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 4579999999999887654331 1 235579999999999999999998655 46899999
Q ss_pred ccchhh-------hHhhhhhH----HHHHHHHH----------HHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHH
Q 005661 260 GSEFEE-------MFVGVGAR----RVRDLFSA----------AKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLL 318 (685)
Q Consensus 260 ~s~l~~-------~~~g~~~~----~ir~lF~~----------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL 318 (685)
|..+.. .+.+.... ..+..+.. ......++|||||++.|- ...+..+..++
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld--------~~~Q~~Ll~~L 289 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD--------PLLQNKLLKVL 289 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC--------HHHHHHHHHHH
Confidence 876521 11111000 01111110 012234699999999873 22222333333
Q ss_pred HHhh------cc-----------------ccCCCEEEEEe-cCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 005661 319 VELD------GF-----------------KQNEGIIVIAA-TNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM 374 (685)
Q Consensus 319 ~~ld------~~-----------------~~~~~ViVIaa-TN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l 374 (685)
..-. .+ .....+++|++ |+.++.++++|++ ||. .+.+++++.+++.+|++.++
T Consensus 290 e~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 290 EDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAA 366 (615)
T ss_pred hhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHH
Confidence 2200 00 01223566654 5668889999987 887 67889999999999999998
Q ss_pred hhhcccC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc--------CCCccCHHHHHHHHHHHhcccccccccccc-
Q 005661 375 SKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMD--------GAKAVTMADLEYAKDKIMMGSERKSAVISD- 444 (685)
Q Consensus 375 ~~~~~~~-~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~--------~~~~It~edl~~A~~~v~~g~~~~~~~~s~- 444 (685)
.+....- +--+..|+..+. .++...+++..+...+..+ ....|+.+|+++++..-. +++
T Consensus 367 ~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r---------~~~~ 435 (615)
T TIGR02903 367 EKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR---------LSPY 435 (615)
T ss_pred HHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc---------Cccc
Confidence 7643211 112344566553 4555556665554443211 223799999999875321 111
Q ss_pred hhhhhhhHHHhhhHHHhhhcCCCCccceEEEe--eCC-CccceEEecCCCCcccccHHHHHHHHHHhhchHhhhhhhcCC
Q 005661 445 ESRKLTAFHEGGHALVAVHTDGALPVHKATIV--PRG-MSLGMVAQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGE 521 (685)
Q Consensus 445 ~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~--prg-~~~G~~~~~p~~~~~~~t~~~l~~~i~v~lgGraAEel~~G~ 521 (685)
...+..--.+.||+....+......+..|... ++| ...|.+ .+|+ .....+|+.+.+-+.++ +..-.+-|..
T Consensus 436 ~~~~~~~~~~~g~v~~~~~~g~~g~~v~vE~~~~~~g~pg~~~v-gl~~-~~~~e~kerv~~A~~~l---~~~~g~~~~~ 510 (615)
T TIGR02903 436 EKRKASPTYEVGHVFGLGVSGFVGSVLEIEAVAFEAKEPGKGTV-RFND-TAGSMAKDSVFNAASVI---RKITGKDLSN 510 (615)
T ss_pred hhhhccCCCCcEEEEEEEEeCCCcEEEEEEEEEecCCCCCCceE-eeCC-cchHHHHHHHHHHHHHH---HHhCCCCCCC
Confidence 11111222344555544333322333344333 333 223333 2333 22345566665555433 1111122322
Q ss_pred CC---------ccCCchHHHHHHHHHHHHH
Q 005661 522 NE---------VTSGASSDLQQATKLARAM 542 (685)
Q Consensus 522 ~~---------~tsGa~~Dl~~AT~lA~~m 542 (685)
.. .-.|.+-||.-|..++.++
T Consensus 511 ~di~vnl~~~~~k~gpsadLaia~ailSa~ 540 (615)
T TIGR02903 511 YDIHVNVIGGGRIDGPSAGAAITLCMISAI 540 (615)
T ss_pred eeEEEEcCCCCCCCCchHHHHHHHHHHHhc
Confidence 11 1246789999777776654
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.3e-13 Score=157.23 Aligned_cols=203 Identities=18% Similarity=0.245 Sum_probs=141.7
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC--------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------------- 253 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~-------------- 253 (685)
..+.+|+||+|++.+++.|.+.+. ..+.|.++||+||||+|||++|+++|+.+.+
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 345689999999999988887664 2456778999999999999999999998753
Q ss_pred ----------CEEEeeccchhhhHhhhhhHHHHHHHHHHHhC----CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 254 ----------PFFSCSGSEFEEMFVGVGARRVRDLFSAAKKR----SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 254 ----------~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
.++.++++. ..+...+|.+...+... ...|++|||+|.+. ....+.|+.
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaLLK 141 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNALLK 141 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHHHH
Confidence 122222211 11234466666655432 23699999999873 224567777
Q ss_pred HhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHH
Q 005661 320 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 398 (685)
Q Consensus 320 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sga 398 (685)
.|+. +...+++|.+|+.+..|.+.+++ |+. .+.|++|+..+....++..+.+.... ++-.+..++..+.| +.+
T Consensus 142 tLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR 215 (605)
T PRK05896 142 TLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLR 215 (605)
T ss_pred HHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 7773 45578888888889999999887 775 78999999999999999888664321 12224556766654 566
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 399 DLANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 399 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
++.++++.... ..+ ..|+.+++...+
T Consensus 216 ~AlnlLekL~~---y~~-~~It~e~V~ell 241 (605)
T PRK05896 216 DGLSILDQLST---FKN-SEIDIEDINKTF 241 (605)
T ss_pred HHHHHHHHHHh---hcC-CCCCHHHHHHHh
Confidence 66666665433 333 238888887753
No 98
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.4e-13 Score=158.75 Aligned_cols=202 Identities=22% Similarity=0.303 Sum_probs=144.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------- 254 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------- 254 (685)
+.+.+|+||+|++.+++.|.+.+. ..+.|..+||+||+|+|||++|+++|+.+++.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAID-----------TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 345689999999999999988775 24567789999999999999999999988642
Q ss_pred -----------EEEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 255 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 255 -----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
++.+++.. ..+...++++...+.. ....|++|||+|.+. ....|.|+.
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----------~~a~naLLk 141 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----------TNAFNALLK 141 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----------HHHHHHHHH
Confidence 22222211 1223456776666542 223699999999883 345678888
Q ss_pred HhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHH
Q 005661 320 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 398 (685)
Q Consensus 320 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sga 398 (685)
.|+. ..+.+++|.+|+.++.|.+.+++ |+. .+.|..++.++....++..+++.... .+-.+..+++.+.| +.+
T Consensus 142 ~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 8873 55678888888999999999987 764 78999999999988888888765432 22235567777765 566
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 399 DLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 399 dI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
++.+++..+..+. + ..|+.+|+...
T Consensus 216 ~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 216 DSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 6667666554432 2 45888888765
No 99
>PRK06893 DNA replication initiation factor; Validated
Probab=99.54 E-value=3.4e-13 Score=138.34 Aligned_cols=210 Identities=10% Similarity=0.121 Sum_probs=129.1
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 264 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~ 264 (685)
.+..+|++.+|.++.. .+..+... +.. .....++||||||||||+|++++|+++ +....+++.....
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~------~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKN------FID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHH------hhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4567899999766432 12222111 111 112258999999999999999999886 3455555543221
Q ss_pred hhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCC-EEEEEecCCcCcCc
Q 005661 265 EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEG-IIVIAATNFPESLD 343 (685)
Q Consensus 265 ~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~-ViVIaaTN~p~~LD 343 (685)
.. ...+++.. ....+|+|||++.+.++. ..+..+..+++.+ ...++ ++|+.++..|..++
T Consensus 80 ~~--------~~~~~~~~--~~~dlLilDDi~~~~~~~------~~~~~l~~l~n~~---~~~~~~illits~~~p~~l~ 140 (229)
T PRK06893 80 YF--------SPAVLENL--EQQDLVCLDDLQAVIGNE------EWELAIFDLFNRI---KEQGKTLLLISADCSPHALS 140 (229)
T ss_pred hh--------hHHHHhhc--ccCCEEEEeChhhhcCCh------HHHHHHHHHHHHH---HHcCCcEEEEeCCCChHHcc
Confidence 11 11223333 245699999999885432 1233344444433 23333 44555556676654
Q ss_pred ---ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcc-cHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q 005661 344 ---KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV-DLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAV 419 (685)
Q Consensus 344 ---~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~v-dl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~I 419 (685)
+.|.+..++...+.++.||.++|.+|++.++......-+- -+..|++...| +.+.+.++++.... +.....+.|
T Consensus 141 ~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~-~~~~~~~~i 218 (229)
T PRK06893 141 IKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDK-ASLQAQRKL 218 (229)
T ss_pred ccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH-HHHhcCCCC
Confidence 7888855566788999999999999999888654332222 24557777764 77888888876543 333333579
Q ss_pred CHHHHHHHH
Q 005661 420 TMADLEYAK 428 (685)
Q Consensus 420 t~edl~~A~ 428 (685)
|...+++++
T Consensus 219 t~~~v~~~L 227 (229)
T PRK06893 219 TIPFVKEIL 227 (229)
T ss_pred CHHHHHHHh
Confidence 988887765
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.54 E-value=2.3e-13 Score=138.96 Aligned_cols=202 Identities=13% Similarity=0.089 Sum_probs=129.7
Q ss_pred CCCCCCCcCC--CcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccc
Q 005661 188 ESNTKFSDVK--GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 262 (685)
Q Consensus 188 ~~~~~f~dV~--G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~ 262 (685)
..+.+|++++ +...+...++++.. +...+.+++|+||||||||+||+++++++ +.+++++++..
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 3457899976 33555555555443 22335589999999999999999999875 67889998877
Q ss_pred hhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC--
Q 005661 263 FEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE-- 340 (685)
Q Consensus 263 l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~-- 340 (685)
+.... .. .....+|+|||+|.+.. ..+..+..++.. .......++|.+++.+.
T Consensus 81 ~~~~~------------~~--~~~~~~liiDdi~~l~~--------~~~~~L~~~~~~---~~~~~~~~vl~~~~~~~~~ 135 (227)
T PRK08903 81 PLLAF------------DF--DPEAELYAVDDVERLDD--------AQQIALFNLFNR---VRAHGQGALLVAGPAAPLA 135 (227)
T ss_pred hHHHH------------hh--cccCCEEEEeChhhcCc--------hHHHHHHHHHHH---HHHcCCcEEEEeCCCCHHh
Confidence 54321 11 22356999999998732 122333334333 23344444444544332
Q ss_pred -cCcccccCCCCc--ccccccCCCCHHHHHHHHHHHhhhhcccCcc-cHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 005661 341 -SLDKALVRPGRF--DRHIVVPNPDVEGRRQIMESHMSKVLKADDV-DLMIIARGTPGFSGADLANLVNIAALKAAMDGA 416 (685)
Q Consensus 341 -~LD~aLlRpgRF--d~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~v-dl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~ 416 (685)
.+.+.|.+ || ...+.+++|+.+++..+++.+.......-+- -+..|+...+ -+.+++.++++.-...|... .
T Consensus 136 ~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~~~~-~ 211 (227)
T PRK08903 136 LPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYSLEQ-K 211 (227)
T ss_pred CCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHh-C
Confidence 24466665 66 4688999999999999998876554322221 2455677554 47888888988755545444 4
Q ss_pred CccCHHHHHHHHH
Q 005661 417 KAVTMADLEYAKD 429 (685)
Q Consensus 417 ~~It~edl~~A~~ 429 (685)
+.||...+.+++.
T Consensus 212 ~~i~~~~~~~~l~ 224 (227)
T PRK08903 212 RPVTLPLLREMLA 224 (227)
T ss_pred CCCCHHHHHHHHh
Confidence 7899988887753
No 101
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2e-13 Score=149.40 Aligned_cols=210 Identities=20% Similarity=0.267 Sum_probs=138.3
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccch----
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF---- 263 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l---- 263 (685)
..+.+|+||+|++.+++.+.+.+.. .+.|.++|||||||+|||++|+++++.+..+.....+..+
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 3457899999999998888877652 3567789999999999999999999987653211111100
Q ss_pred --hhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 264 --EEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 264 --~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
.+.....+...++.+++.+.. ..+.||+|||+|.+. ...++.|+..++. .....++|.+|+
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~--~~~~~~~Il~~~ 146 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEE--PPAHAIFILATT 146 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhC--CCCceEEEEEeC
Confidence 000011123456777766542 235799999999773 2235667666664 334566677777
Q ss_pred CcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 005661 338 FPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA 416 (685)
Q Consensus 338 ~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~ 416 (685)
.+..+.+++.+ |+. .+.+++|+.++...++...+.+.... ++-.+..++..+.| +.+.+.+.++....++ +.
T Consensus 147 ~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~---~~ 219 (367)
T PRK14970 147 EKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC---GK 219 (367)
T ss_pred CcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc---CC
Confidence 78888888887 663 68999999999999998888765432 22235556666543 4555555555444332 33
Q ss_pred CccCHHHHHHHHH
Q 005661 417 KAVTMADLEYAKD 429 (685)
Q Consensus 417 ~~It~edl~~A~~ 429 (685)
. |+.++++..+.
T Consensus 220 ~-it~~~v~~~~~ 231 (367)
T PRK14970 220 N-ITRQAVTENLN 231 (367)
T ss_pred C-CCHHHHHHHhC
Confidence 3 88888876643
No 102
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.54 E-value=2.1e-13 Score=159.97 Aligned_cols=208 Identities=24% Similarity=0.283 Sum_probs=134.3
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~ 268 (685)
.+.+|+|++|++........+...+.. .. ..++||+||||||||++|+++++..+.+|+.+++....
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~--------~~-~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~---- 89 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA--------DR-VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG---- 89 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc--------CC-CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh----
Confidence 356899999999988543333232222 12 23799999999999999999999999999998875321
Q ss_pred hhhhHHHHHHHHHHH-----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC--cCc
Q 005661 269 GVGARRVRDLFSAAK-----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF--PES 341 (685)
Q Consensus 269 g~~~~~ir~lF~~A~-----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~--p~~ 341 (685)
...++..+..+. .....+|||||+|.+.. ...+.|+..++ ...+++|++|+. ...
T Consensus 90 ---i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-----------~qQdaLL~~lE----~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 90 ---VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-----------AQQDALLPWVE----NGTITLIGATTENPYFE 151 (725)
T ss_pred ---hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-----------HHHHHHHHHhc----CceEEEEEecCCChHhh
Confidence 122333333331 13457999999998731 11234444444 245677776643 346
Q ss_pred CcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhc-----ccCccc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005661 342 LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL-----KADDVD---LMIIARGTPGFSGADLANLVNIAALKAAM 413 (685)
Q Consensus 342 LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~-----~~~~vd---l~~la~~t~G~sgadI~~lv~~A~~~A~~ 413 (685)
+++++++ |. ..+.+++++.+++..|++..+.... ..-.++ +..|++...| +.+++.++++.+...+..
T Consensus 152 l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~~~~ 227 (725)
T PRK13341 152 VNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVESTPP 227 (725)
T ss_pred hhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccc
Confidence 8899987 64 4689999999999999999887321 111222 4557776654 556666666665533322
Q ss_pred cC--CCccCHHHHHHHHHHH
Q 005661 414 DG--AKAVTMADLEYAKDKI 431 (685)
Q Consensus 414 ~~--~~~It~edl~~A~~~v 431 (685)
.. ...|+.+++++++.+.
T Consensus 228 ~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 228 DEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred CCCCceeccHHHHHHHHHHh
Confidence 22 2248888888887663
No 103
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.5e-13 Score=152.34 Aligned_cols=202 Identities=21% Similarity=0.258 Sum_probs=137.2
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC--------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 254 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------------- 254 (685)
.+.+|+||+|++.+++.|+..+.. .+.|..+||+||||+|||++|+++|+.+.+.
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 456899999999999988877752 3567789999999999999999999987542
Q ss_pred -----------EEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 255 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 255 -----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
++.+++... .+...++.+-+... .....|++|||+|.+. ....+.|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHHHH
Confidence 222222110 11223443333221 2456799999999883 234577888
Q ss_pred HhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHH
Q 005661 320 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGA 398 (685)
Q Consensus 320 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sga 398 (685)
.|+. ..+.+++|++||.+..|.+.+.+ |+. .++|+.++.++....++..+++.... ++..+..|+..+.| +.+
T Consensus 144 ~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr 217 (451)
T PRK06305 144 TLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLR 217 (451)
T ss_pred Hhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8875 34577788888888889999887 774 78999999999999888887764332 22235567776654 444
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 399 DLANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 399 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
++.++++.. +...+ ..|+.+++.+++
T Consensus 218 ~a~~~Lekl---~~~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 218 DAESLYDYV---VGLFP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHH---HHhcc-CCcCHHHHHHHH
Confidence 444444433 22223 458999887765
No 104
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.53 E-value=1.8e-13 Score=151.42 Aligned_cols=178 Identities=26% Similarity=0.354 Sum_probs=116.0
Q ss_pred CC-cCCCcHHHHHHHHHHHHH-hcCchhhhh--hCCC-CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh-h
Q 005661 193 FS-DVKGVDEAKQELEEIVHY-LRDPKRFTR--LGGK-LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-M 266 (685)
Q Consensus 193 f~-dV~G~de~k~~L~e~v~~-l~~~~~~~~--~g~~-~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~-~ 266 (685)
++ .|+|++++|+.|...+.. ++....... -... ...++||+||||||||++|+++|..+++||+.++++.+.+ .
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 44 389999999999765532 111100000 0112 2357999999999999999999999999999999998764 4
Q ss_pred HhhhhhHH-HHHHHHHH----HhCCCeEEEEcCchhhcCCCCCCc--h-HHHHHHHHHHHHHhhccc-----------cC
Q 005661 267 FVGVGARR-VRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKD--Q-QYMKMTLNQLLVELDGFK-----------QN 327 (685)
Q Consensus 267 ~~g~~~~~-ir~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~--~-~~~~~~l~~LL~~ld~~~-----------~~ 327 (685)
|+|..... +..++..+ ....++||||||||.+..++.... . -.-..+.+.||..|++-. ..
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~ 228 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQ 228 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCC
Confidence 77765433 44444432 245679999999999986532110 1 111235566777776521 11
Q ss_pred CCEEEEEecCCcC----------------------------------------------------cCcccccCCCCcccc
Q 005661 328 EGIIVIAATNFPE----------------------------------------------------SLDKALVRPGRFDRH 355 (685)
Q Consensus 328 ~~ViVIaaTN~p~----------------------------------------------------~LD~aLlRpgRFd~~ 355 (685)
.+.++|.|+|-.. .+.|.|+ ||+|.+
T Consensus 229 ~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~i 306 (412)
T PRK05342 229 QEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVV 306 (412)
T ss_pred CCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCee
Confidence 2356666666410 0123333 499999
Q ss_pred cccCCCCHHHHHHHHHH
Q 005661 356 IVVPNPDVEGRRQIMES 372 (685)
Q Consensus 356 I~i~~Pd~~eR~~ILk~ 372 (685)
+.|.+.+.++..+|+..
T Consensus 307 v~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 307 ATLEELDEEALVRILTE 323 (412)
T ss_pred eecCCCCHHHHHHHHHH
Confidence 99999999999999974
No 105
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.53 E-value=2.8e-13 Score=141.73 Aligned_cols=192 Identities=24% Similarity=0.229 Sum_probs=118.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh--hHhhh----hhHHH-H--------------------HHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE--MFVGV----GARRV-R--------------------DLFS 280 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~--~~~g~----~~~~i-r--------------------~lF~ 280 (685)
..+||+||||||||++|+++|..+|.+|+.++|+.-.. ..+|. ....+ . .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 37999999999999999999999999999998864221 12221 11111 0 1121
Q ss_pred HHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh----c-------cccCCCEEEEEecCCcC-----cCcc
Q 005661 281 AAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD----G-------FKQNEGIIVIAATNFPE-----SLDK 344 (685)
Q Consensus 281 ~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld----~-------~~~~~~ViVIaaTN~p~-----~LD~ 344 (685)
|.. .+.+|+|||||.+. ...+..+..+|.+-. + +..+.++.||+|+|... .+++
T Consensus 102 -A~~-~g~~lllDEi~r~~--------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 102 -AVR-EGFTLVYDEFTRSK--------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred -HHH-cCCEEEEcchhhCC--------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 212 34699999999762 223334444443210 0 01224678999999763 5688
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhh--cccCcccHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV--LKADDVDLMIIAR-GTPGFSGADLANLVNIAALKAAMDGAKAVTM 421 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~--~~~~~vdl~~la~-~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ 421 (685)
+|++ || ..+.++.|+.++..+|++.+..-. ....-+++-.-.+ ...-...+ ++.++.-+...+....+..++.
T Consensus 172 aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~~~~~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~~~~~~~~~ 247 (262)
T TIGR02640 172 ALLD--RL-ITIFMDYPDIDTETAILRAKTDVAEDSAATIVRLVREFRASGDEITSG-LRASLMIAEVATQQDIPVDVDD 247 (262)
T ss_pred HHHh--hc-EEEECCCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHcCCCCCCCc
Confidence 8988 88 478999999999999999876210 0000011111111 11111222 5666665555566666788999
Q ss_pred HHHHHHHHHHhc
Q 005661 422 ADLEYAKDKIMM 433 (685)
Q Consensus 422 edl~~A~~~v~~ 433 (685)
+||.+.+..++.
T Consensus 248 ~~~~~~~~~~~~ 259 (262)
T TIGR02640 248 EDFVDLCIDILA 259 (262)
T ss_pred HHHHHHHHHHhc
Confidence 999998877654
No 106
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53 E-value=1.3e-13 Score=163.54 Aligned_cols=217 Identities=20% Similarity=0.282 Sum_probs=143.4
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh--------
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-------- 265 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~-------- 265 (685)
.|..|++++|+.+.+++....... ......++|+||||+|||++++.+|+.++.+|+.++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 469999999999988877533211 112236999999999999999999999999999998765432
Q ss_pred -hHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc-----cc--------cCCCEE
Q 005661 266 -MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG-----FK--------QNEGII 331 (685)
Q Consensus 266 -~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~-----~~--------~~~~Vi 331 (685)
.|.|.....+...+..+....| ||||||||.+....+.. ....|+..+|. |. .-++|+
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCceE
Confidence 2555555556666655543444 89999999997543211 12344444442 11 237899
Q ss_pred EEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhc-----cc-Cc--cc---HHHHH-hcCCCCCHHH
Q 005661 332 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL-----KA-DD--VD---LMIIA-RGTPGFSGAD 399 (685)
Q Consensus 332 VIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~-----~~-~~--vd---l~~la-~~t~G~sgad 399 (685)
+|+|+|.. .|+++|+. ||. .|.++.++.++..+|++.|+.... .. .. ++ +..++ ..+..+..+.
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 99999987 59999998 996 789999999999999999995211 11 11 22 22333 3344444566
Q ss_pred HHHHHHHHHHHHHH----cCC---CccCHHHHHHHH
Q 005661 400 LANLVNIAALKAAM----DGA---KAVTMADLEYAK 428 (685)
Q Consensus 400 I~~lv~~A~~~A~~----~~~---~~It~edl~~A~ 428 (685)
|+.+++..+..... .+. -.|+.+++.+-+
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHh
Confidence 66555544433332 221 257778776654
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=3.3e-13 Score=155.48 Aligned_cols=209 Identities=21% Similarity=0.237 Sum_probs=147.0
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEee--------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS-------- 259 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs-------- 259 (685)
..+.+|+||+|++.+++.|...+. ..+.|.++||+||+|+|||++|+++|+.+.+.....+
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 345689999999999999988765 2456789999999999999999999998865421111
Q ss_pred -----ccchhh--------hH--hhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 260 -----GSEFEE--------MF--VGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 260 -----~s~l~~--------~~--~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
|..+.+ .. ...+...+|++.+.+.. ....|++|||+|.+. ....+.||..
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----------~~a~naLLKt 155 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----------TAAFNALLKT 155 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------HHHHHHHHHH
Confidence 111110 00 01224557777776643 234799999999883 2346778887
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~sgad 399 (685)
|+. ....+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++...+++..+++....-+ -.+..|+..+.| +.++
T Consensus 156 LEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~ 229 (598)
T PRK09111 156 LEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRD 229 (598)
T ss_pred HHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 774 44567777788888888888877 76 47899999999999999988876543222 224556776654 7778
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
+.++++.+... +...|+.+++...+
T Consensus 230 al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 230 GLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred HHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 88887765543 23579999998754
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.4e-13 Score=150.41 Aligned_cols=213 Identities=18% Similarity=0.238 Sum_probs=140.3
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEE----------E
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFF----------S 257 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi----------~ 257 (685)
..+.+|++|+|++.+++.|+..+. ..+.|..+||+||||+|||++|+++|+.+.+.-. .
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 345689999999999998887765 3456778999999999999999999999866210 0
Q ss_pred eeccc------hhh-------hHhh---hhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHH
Q 005661 258 CSGSE------FEE-------MFVG---VGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQL 317 (685)
Q Consensus 258 vs~s~------l~~-------~~~g---~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~L 317 (685)
..|.. +.. .+.+ .+...++++.+.+.. ....|+||||+|.+. ....+.|
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----------~~~~~~L 147 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----------IAAFNAF 147 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------HHHHHHH
Confidence 11111 000 0011 123455655555421 233699999999883 2245667
Q ss_pred HHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCC
Q 005661 318 LVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFS 396 (685)
Q Consensus 318 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~s 396 (685)
+..++. .....++|.+|+.+..+-+.+.+ |+. .+++++++.++..+.++..+++.... .+-.+..++..+.| +
T Consensus 148 Lk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~ 221 (397)
T PRK14955 148 LKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-S 221 (397)
T ss_pred HHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 777763 34456666677777788888876 664 78999999999988888887654321 12224556666654 5
Q ss_pred HHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHH
Q 005661 397 GADLANLVNIAALKAAM-DGAKAVTMADLEYAK 428 (685)
Q Consensus 397 gadI~~lv~~A~~~A~~-~~~~~It~edl~~A~ 428 (685)
.+.+.+.++.+..++.. .....|+.+++.+.+
T Consensus 222 lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 222 MRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 66666666665555432 234689999988765
No 109
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1e-12 Score=143.44 Aligned_cols=216 Identities=22% Similarity=0.325 Sum_probs=155.4
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-----EEEeeccchhhhHh-
Q 005661 195 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-----FFSCSGSEFEEMFV- 268 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-----fi~vs~s~l~~~~~- 268 (685)
.+.+.++.++.+..++... +....|.++++|||||||||.+++.+++++.-+ ++++||......|.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~--------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 18 ELPHREEEINQLASFLAPA--------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cccccHHHHHHHHHHHHHH--------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 3999999999888776542 233456679999999999999999999988443 89999987654421
Q ss_pred --------------hhh-hHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEE
Q 005661 269 --------------GVG-ARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIV 332 (685)
Q Consensus 269 --------------g~~-~~~ir~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViV 332 (685)
|.. ......+++.... ...-||+|||+|.|..+.. ..+.+|+...+.. ..+|.+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~v 159 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSI 159 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEE
Confidence 111 1223334443333 4567999999999976542 6788888766644 567899
Q ss_pred EEecCCcC---cCcccccCCCCcc-cccccCCCCHHHHHHHHHHHhhhhcccCccc---HHHHH---hcCCCCCHHHHHH
Q 005661 333 IAATNFPE---SLDKALVRPGRFD-RHIVVPNPDVEGRRQIMESHMSKVLKADDVD---LMIIA---RGTPGFSGADLAN 402 (685)
Q Consensus 333 IaaTN~p~---~LD~aLlRpgRFd-~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd---l~~la---~~t~G~sgadI~~ 402 (685)
|+.+|..+ .+|+.+.+ +|. ..|.||+++.++...|++...+.......++ +..++ ....| ..+---.
T Consensus 160 i~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aid 236 (366)
T COG1474 160 IAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAID 236 (366)
T ss_pred EEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHH
Confidence 99999764 57888876 333 3589999999999999999997654444333 22233 23333 3344448
Q ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 403 LVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 403 lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
+|+.|+..|.+++...++.+|+.+|.+.+
T Consensus 237 ilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 237 ILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 99999999999999999999999995544
No 110
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.8e-13 Score=151.97 Aligned_cols=208 Identities=22% Similarity=0.294 Sum_probs=140.8
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC-------CEEE-eec
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------PFFS-CSG 260 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~-------~fi~-vs~ 260 (685)
.+.+|+||+|++.+.+.|+..+.. .+.+..+||+||||+|||++|+.+|+.+++ |+-. .+|
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 456899999999999988877752 345667899999999999999999998864 1111 111
Q ss_pred cchhh-----hH-----hhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 005661 261 SEFEE-----MF-----VGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ 326 (685)
Q Consensus 261 s~l~~-----~~-----~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~ 326 (685)
..+.. .+ ...+...+|.+.+.+.. ..+.|++|||+|.+. ....+.|+..++. .
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~naLLk~LEe--p 146 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAFNALLKTLEE--P 146 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHHHHHHHHHhc--C
Confidence 11100 00 01123345555555432 345799999999873 2345777777774 3
Q ss_pred CCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCCHHHHHHHHH
Q 005661 327 NEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGADLANLVN 405 (685)
Q Consensus 327 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~sgadI~~lv~ 405 (685)
+..+++|.+|+.++.+.+++.+ |+. .+.+++|+.++...+++.+++......+ -.+..++..+.| +.+++.++++
T Consensus 147 p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ld 222 (486)
T PRK14953 147 PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLD 222 (486)
T ss_pred CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 4566777777778888888887 764 6899999999999999998876543322 224556776654 5666777776
Q ss_pred HHHHHHHHcCCCccCHHHHHHHH
Q 005661 406 IAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 406 ~A~~~A~~~~~~~It~edl~~A~ 428 (685)
.+..+ +...||.+++..++
T Consensus 223 kl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 223 QASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHh----cCCCcCHHHHHHHh
Confidence 66543 34568888888754
No 111
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.52 E-value=2.8e-13 Score=147.92 Aligned_cols=174 Identities=31% Similarity=0.437 Sum_probs=123.9
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhhhhh-CCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh-hHhh-h
Q 005661 195 DVKGVDEAKQELEEIVHY-LRDPKRFTRL-GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-MFVG-V 270 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~-l~~~~~~~~~-g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~-~~~g-~ 270 (685)
-|+|++++|+.+...+.. ++.......+ .-..|+++||+||||||||++|+++|+.++.||+.++++.+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999766543 2221111111 1235789999999999999999999999999999999987764 5666 3
Q ss_pred hhHHHHHHHHHH--------------------------------------------------------------------
Q 005661 271 GARRVRDLFSAA-------------------------------------------------------------------- 282 (685)
Q Consensus 271 ~~~~ir~lF~~A-------------------------------------------------------------------- 282 (685)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 455555555544
Q ss_pred -----------------------------------------------------------------------HhCCCeEEE
Q 005661 283 -----------------------------------------------------------------------KKRSPCIIF 291 (685)
Q Consensus 283 -----------------------------------------------------------------------~~~~P~ILf 291 (685)
+....+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012346999
Q ss_pred EcCchhhcCCCCCCc-hHHHHHHHHHHHHHhhcc--------ccCCCEEEEEecC----CcCcCcccccCCCCccccccc
Q 005661 292 IDEIDAIGGSRNPKD-QQYMKMTLNQLLVELDGF--------KQNEGIIVIAATN----FPESLDKALVRPGRFDRHIVV 358 (685)
Q Consensus 292 IDEID~l~~~r~~~~-~~~~~~~l~~LL~~ld~~--------~~~~~ViVIaaTN----~p~~LD~aLlRpgRFd~~I~i 358 (685)
|||||.++.+..+.. +-....+.+.||..++|- -...+|++|++-- .|+.|-|.|. |||..++.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 999999987653222 122344667788777773 2346788887764 3555656666 699999999
Q ss_pred CCCCHHHHHHHH
Q 005661 359 PNPDVEGRRQIM 370 (685)
Q Consensus 359 ~~Pd~~eR~~IL 370 (685)
..++.++...||
T Consensus 331 ~~L~~edL~rIL 342 (441)
T TIGR00390 331 QALTTDDFERIL 342 (441)
T ss_pred CCCCHHHHHHHh
Confidence 999999999988
No 112
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=3.9e-13 Score=156.01 Aligned_cols=209 Identities=23% Similarity=0.297 Sum_probs=146.2
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEE---eeccchh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS---CSGSEFE 264 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~---vs~s~l~ 264 (685)
..+.+|+||+|++.+++.|+..+. ..+.+..+||+||+|+|||++|+++|+.+.++-.. ..|....
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~-----------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIK-----------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 346789999999999999888776 23566789999999999999999999988653110 0111110
Q ss_pred h---h----H-----hhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCC
Q 005661 265 E---M----F-----VGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNE 328 (685)
Q Consensus 265 ~---~----~-----~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~ 328 (685)
. . + ...+...+|.+.+.+.. ....|++|||+|.+. ....+.||..|+. ++.
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLEE--PP~ 147 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLEE--PPK 147 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhhc--CCC
Confidence 0 0 0 00224457777766643 344799999999883 2357788888884 456
Q ss_pred CEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCCHHHHHHHHHHH
Q 005661 329 GIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGADLANLVNIA 407 (685)
Q Consensus 329 ~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~sgadI~~lv~~A 407 (685)
.+++|.+|+.++.|.+.+++ |+. ++.|.+|+.++..++|+..+.+.....+ ..+..++..+.| +.+++.++++.+
T Consensus 148 ~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl 223 (725)
T PRK07133 148 HVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQV 223 (725)
T ss_pred ceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 78888888889999999887 775 7899999999999999988766543222 225567777664 566666766655
Q ss_pred HHHHHHcCCCccCHHHHHHHH
Q 005661 408 ALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 408 ~~~A~~~~~~~It~edl~~A~ 428 (685)
..+. ...|+.+++.+.+
T Consensus 224 ~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 224 SIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHhc----cCCCCHHHHHHHH
Confidence 4332 3348888887654
No 113
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=6.2e-13 Score=151.77 Aligned_cols=221 Identities=20% Similarity=0.259 Sum_probs=143.9
Q ss_pred CCCCCCCcCC-CcHHH--HHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEee
Q 005661 188 ESNTKFSDVK-GVDEA--KQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS 259 (685)
Q Consensus 188 ~~~~~f~dV~-G~de~--k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs 259 (685)
.+..+|++++ |..+. ...+..+++ ++. .....++|||++|+|||+|++++++++ +..+++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae---~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAE---APA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHh---Ccc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3567899876 44332 223333333 211 112359999999999999999999976 56889999
Q ss_pred ccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC-
Q 005661 260 GSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF- 338 (685)
Q Consensus 260 ~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~- 338 (685)
+.+|...+...........|..- -..+.+|+||||+.+.++. ..+..+-.+++.+ ...++-+|| |+|.
T Consensus 352 aeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke------~tqeeLF~l~N~l---~e~gk~III-TSd~~ 420 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE------STQEEFFHTFNTL---HNANKQIVL-SSDRP 420 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH------HHHHHHHHHHHHH---HhcCCCEEE-ecCCC
Confidence 99988776544332222334332 2346899999999886432 1222233333332 222333444 5554
Q ss_pred cC---cCcccccCCCCccc--ccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005661 339 PE---SLDKALVRPGRFDR--HIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNIAALKAA 412 (685)
Q Consensus 339 p~---~LD~aLlRpgRFd~--~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~t~G~sgadI~~lv~~A~~~A~ 412 (685)
|. .+++.|.+ ||.. .+.|..||.+.|.+||+.++....+.-+-+ +..|+.... -+.++|+.+++....++.
T Consensus 421 P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 421 PKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFAS 497 (617)
T ss_pred hHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 33 46788887 8865 558899999999999999987654332222 445677665 378899988888766666
Q ss_pred HcCCCccCHHHHHHHHHHHhc
Q 005661 413 MDGAKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 413 ~~~~~~It~edl~~A~~~v~~ 433 (685)
..+ +.|+.+.++++++.++.
T Consensus 498 ~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 498 LNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred hhC-CCCCHHHHHHHHHHhhc
Confidence 544 66999999998877644
No 114
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=8.5e-13 Score=147.66 Aligned_cols=226 Identities=19% Similarity=0.268 Sum_probs=140.7
Q ss_pred CCCCCCCcCC-CcHHHH--HHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 188 ESNTKFSDVK-GVDEAK--QELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 188 ~~~~~f~dV~-G~de~k--~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
.++.+|++.+ |..+.. ..++++... +. ..+....++++||||||+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~---~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKV---SE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhc---cc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4667899876 654432 333433321 11 0111223579999999999999999999876 6889999988
Q ss_pred chhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC-
Q 005661 262 EFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE- 340 (685)
Q Consensus 262 ~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~- 340 (685)
+|...+.......-...|.... ..+.+|+|||++.+.++. ..++..-.++|.+. ..+..+|+.+++.|.
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~--~~qeelf~l~N~l~-------~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG--ATQEEFFHTFNSLH-------TEGKLIVISSTCAPQD 248 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--hhHHHHHHHHHHHH-------HCCCcEEEecCCCHHH
Confidence 7766544322111112343322 356799999999885432 11222333333332 223445555545554
Q ss_pred --cCcccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhcCCCCCHHHHHHHHHHHHH---HHH
Q 005661 341 --SLDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNIAAL---KAA 412 (685)
Q Consensus 341 --~LD~aLlRpgRFd--~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~t~G~sgadI~~lv~~A~~---~A~ 412 (685)
.+++.|.+ ||. ..+.+++|+.++|..||+..+......-+-+ ++.|+....+ +.++|.+.++..+. .+.
T Consensus 249 l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~ 325 (445)
T PRK12422 249 LKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKK 325 (445)
T ss_pred HhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHH
Confidence 46688887 886 6778999999999999999987754322222 3346665553 67778877776642 222
Q ss_pred HcCCCccCHHHHHHHHHHHhc
Q 005661 413 MDGAKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 413 ~~~~~~It~edl~~A~~~v~~ 433 (685)
.. ...|+.+++.+++..++.
T Consensus 326 ~~-~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 326 LS-HQLLYVDDIKALLHDVLE 345 (445)
T ss_pred hh-CCCCCHHHHHHHHHHhhh
Confidence 22 357999999999987653
No 115
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4.9e-13 Score=153.32 Aligned_cols=208 Identities=21% Similarity=0.255 Sum_probs=143.4
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------EEEe-ec
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------FFSC-SG 260 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------fi~v-s~ 260 (685)
.+.+|+||+|++.+++.|+..+. ..+.|..+||+||||+|||++|+++|+.+.+. +-.+ +|
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIE-----------SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 45689999999999999887775 23467789999999999999999999988652 1111 01
Q ss_pred cchhhh-------Hhh---hhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 005661 261 SEFEEM-------FVG---VGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ 326 (685)
Q Consensus 261 s~l~~~-------~~g---~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~ 326 (685)
..+... +-| .+...++++.+.+. .....|++|||+|.+. ....+.||..++. +
T Consensus 80 ~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK~LEe--p 146 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLKTIEE--P 146 (563)
T ss_pred HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHHhhcc--C
Confidence 110000 001 12234555554432 2345799999999883 3356788888773 5
Q ss_pred CCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHH
Q 005661 327 NEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVN 405 (685)
Q Consensus 327 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~ 405 (685)
...+++|.+|+.++.|.+++++ |+. .+.|.+++.++..++++..+.+.... .+-.+..|+....| +.+++.++++
T Consensus 147 p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLd 222 (563)
T PRK06647 147 PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFD 222 (563)
T ss_pred CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 5678888888888889999887 775 68899999999999998887654332 12224557776655 6777778777
Q ss_pred HHHHHHHHcCCCccCHHHHHHHH
Q 005661 406 IAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 406 ~A~~~A~~~~~~~It~edl~~A~ 428 (685)
.+..++ ...|+.+++...+
T Consensus 223 klis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 223 QVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHhhc----CCCCCHHHHHHHh
Confidence 665442 2468888887764
No 116
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.50 E-value=1.2e-12 Score=134.89 Aligned_cols=206 Identities=14% Similarity=0.147 Sum_probs=127.0
Q ss_pred CCCCCCCcCC-C-cHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccc
Q 005661 188 ESNTKFSDVK-G-VDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 262 (685)
Q Consensus 188 ~~~~~f~dV~-G-~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~ 262 (685)
.++.+|++.+ | ...+...++++.. .+ .+..++|+||||||||+|++++++++ +..+.+++...
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3566888876 4 4445555554432 11 12379999999999999999999876 34455555544
Q ss_pred hhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCC-EEEEEecCCcCc
Q 005661 263 FEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEG-IIVIAATNFPES 341 (685)
Q Consensus 263 l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~-ViVIaaTN~p~~ 341 (685)
.... ..++++.... ..+|+|||++.+.++ ...+..+..+++.+ ...++ .+++.+++.|..
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~------~~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGD------ELWEMAIFDLYNRI---LESGRTRLLITGDRPPRQ 144 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcCC------HHHHHHHHHHHHHH---HHcCCCeEEEeCCCChHH
Confidence 3221 1122222222 259999999988532 11223333333332 12333 355555555555
Q ss_pred ---CcccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005661 342 ---LDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 415 (685)
Q Consensus 342 ---LD~aLlRpgRFd--~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 415 (685)
+.|.|++ |+. .++.+.+|+.+++.++++.+.......- +--++.|++...| +.+.+.++++... .+....
T Consensus 145 l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~-~~~l~~ 220 (235)
T PRK08084 145 LNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD-RASITA 220 (235)
T ss_pred cCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH-HHHHhc
Confidence 5688887 775 5789999999999999998776542221 1124557777764 7888888888753 333334
Q ss_pred CCccCHHHHHHHH
Q 005661 416 AKAVTMADLEYAK 428 (685)
Q Consensus 416 ~~~It~edl~~A~ 428 (685)
.+.||...+++++
T Consensus 221 ~~~it~~~~k~~l 233 (235)
T PRK08084 221 QRKLTIPFVKEIL 233 (235)
T ss_pred CCCCCHHHHHHHH
Confidence 4569988887765
No 117
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.8e-13 Score=153.98 Aligned_cols=167 Identities=27% Similarity=0.449 Sum_probs=128.1
Q ss_pred CcCCCcHHHHHHHHHHHHH--hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh------
Q 005661 194 SDVKGVDEAKQELEEIVHY--LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE------ 265 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~--l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~------ 265 (685)
+|=.|++++|+.+.|++.- |+.. ...+-+.|+||||+|||.++|+||+.+|+.|+.++...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs--------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGS--------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhccc--------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 5778999999999988764 3332 23446889999999999999999999999999998765432
Q ss_pred ---hHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH------hhcc----ccCCCEEE
Q 005661 266 ---MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE------LDGF----KQNEGIIV 332 (685)
Q Consensus 266 ---~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~------ld~~----~~~~~ViV 332 (685)
-|+|....++-+.++..+-..| +++|||||.++.. ..++. ...+.++|.- +|.| -.-+.|++
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g-~qGDP---asALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG-HQGDP---ASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC-CCCCh---HHHHHHhcChhhccchhhhccccccchhheEE
Confidence 3888888888888888877777 8889999999832 22222 1222232211 1111 12357999
Q ss_pred EEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhh
Q 005661 333 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSK 376 (685)
Q Consensus 333 IaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~ 376 (685)
|+|.|..+.|+++|+. |+. .|+++-+..++..+|.+.||-.
T Consensus 558 icTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred EEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 9999999999999997 885 8999999999999999999843
No 118
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2e-13 Score=154.58 Aligned_cols=164 Identities=26% Similarity=0.406 Sum_probs=127.0
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh--------
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-------- 265 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~-------- 265 (685)
.|=.|++++|+.+.|++.-.+.... .+- .-++|+||||+|||+|+++||+.+|+.|+.++.....+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~-----~kG-pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK-----LKG-PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc-----CCC-cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4678999999999887765322211 111 25889999999999999999999999999998765433
Q ss_pred -hHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc-----c--------ccCCCEE
Q 005661 266 -MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG-----F--------KQNEGII 331 (685)
Q Consensus 266 -~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~-----~--------~~~~~Vi 331 (685)
-|+|....++-+-...+....| +++|||||.++.+-...-. ..||..||- | -.-++|+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchhheE
Confidence 3888888888888888888777 8889999999765322211 223333331 1 1235799
Q ss_pred EEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 005661 332 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM 374 (685)
Q Consensus 332 VIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l 374 (685)
+|+|+|..+.++.+|+. |+. +|+++-++.++..+|.+.||
T Consensus 469 FiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 99999999999999997 885 89999999999999999998
No 119
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.49 E-value=2.9e-13 Score=142.43 Aligned_cols=202 Identities=26% Similarity=0.402 Sum_probs=129.4
Q ss_pred CCCCcCCCcHHHHHH---HHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC---EEEeeccchh
Q 005661 191 TKFSDVKGVDEAKQE---LEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---FFSCSGSEFE 264 (685)
Q Consensus 191 ~~f~dV~G~de~k~~---L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~---fi~vs~s~l~ 264 (685)
.+++|.+|++.+..+ |+.+++. ...| .++|+||||||||+||+.|+....-+ |+.++...-
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq-----------~~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a- 201 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ-----------NRIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA- 201 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc-----------CCCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-
Confidence 468899999887554 3333332 2223 69999999999999999999988666 777776432
Q ss_pred hhHhhhhhHHHHHHHHHHHh-----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC--
Q 005661 265 EMFVGVGARRVRDLFSAAKK-----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN-- 337 (685)
Q Consensus 265 ~~~~g~~~~~ir~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN-- 337 (685)
...-+|++|+.++. ....|||||||+.+-... ...||-. ..++.|++|++|.
T Consensus 202 ------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ-----------QD~fLP~----VE~G~I~lIGATTEN 260 (554)
T KOG2028|consen 202 ------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ-----------QDTFLPH----VENGDITLIGATTEN 260 (554)
T ss_pred ------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh-----------hhcccce----eccCceEEEecccCC
Confidence 23558889988864 346899999999873211 1122221 2456788888763
Q ss_pred CcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhc--------ccC-c--cc---HHHHHhcCCCCCHHHHHHH
Q 005661 338 FPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL--------KAD-D--VD---LMIIARGTPGFSGADLANL 403 (685)
Q Consensus 338 ~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~--------~~~-~--vd---l~~la~~t~G~sgadI~~l 403 (685)
..-.|..+|++ |+ +++.+...+.+....||.+-+.-.. +.. . ++ ++.++..++|-..+.|. .
T Consensus 261 PSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN-~ 336 (554)
T KOG2028|consen 261 PSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALN-A 336 (554)
T ss_pred CccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHH-H
Confidence 34468899998 66 4678888889999999988553111 111 1 21 44567777763333222 2
Q ss_pred HHHHH-HHHHHcC---CCccCHHHHHHHHHH
Q 005661 404 VNIAA-LKAAMDG---AKAVTMADLEYAKDK 430 (685)
Q Consensus 404 v~~A~-~~A~~~~---~~~It~edl~~A~~~ 430 (685)
+..+. +...+.+ +..++.+|+.+.+.+
T Consensus 337 Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 337 LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 22222 2223333 346889999888765
No 120
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.49 E-value=4.7e-13 Score=138.86 Aligned_cols=184 Identities=26% Similarity=0.315 Sum_probs=125.5
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC------EEEeecc
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------FFSCSGS 261 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------fi~vs~s 261 (685)
..+.+|+|+.|++.+.+.|+..+.. + ..| .+|||||||||||+.|+++|+++..+ +...+.+
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~-~----------~lp-~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR-R----------ILP-HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh-c----------CCc-eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 4567899999999999999876653 1 222 69999999999999999999998662 2333444
Q ss_pred chhhhHhhhhhHHHHHHHHHHHh---------CCC-eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEE
Q 005661 262 EFEEMFVGVGARRVRDLFSAAKK---------RSP-CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGII 331 (685)
Q Consensus 262 ~l~~~~~g~~~~~ir~lF~~A~~---------~~P-~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~Vi 331 (685)
+....-+ ...++. -|.+... ..| -|++|||.|.+. ....+.|.+.|+.+.. .+.
T Consensus 98 derGisv--vr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----------sdaq~aLrr~mE~~s~--~tr 161 (346)
T KOG0989|consen 98 DERGISV--VREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----------SDAQAALRRTMEDFSR--TTR 161 (346)
T ss_pred ccccccc--hhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh-----------HHHHHHHHHHHhcccc--ceE
Confidence 4332211 111111 1222211 122 699999999883 4556777788886544 567
Q ss_pred EEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhcCCCCCHHHHHHHHHH
Q 005661 332 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNI 406 (685)
Q Consensus 332 VIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~t~G~sgadI~~lv~~ 406 (685)
+|..||+.+.|...+.+ |.. .+.|++.+.+.....|+....+....-+-| +..|+..+.| ||+..+..
T Consensus 162 FiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~Ait~ 230 (346)
T KOG0989|consen 162 FILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRAITT 230 (346)
T ss_pred EEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHHH
Confidence 88889999999988887 775 678888777777888888877655443333 4556776655 77766554
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=7.2e-13 Score=150.14 Aligned_cols=202 Identities=22% Similarity=0.259 Sum_probs=143.4
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC--------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------------- 253 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~-------------- 253 (685)
..+.+|+||+|++.+++.|+..+. ..+.|..+|||||||+|||++|+++++.+.+
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~-----------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 345789999999999999988775 2456778899999999999999999998742
Q ss_pred ----------CEEEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 254 ----------PFFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 254 ----------~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
.++.++.+. ..+...++++...... ....|++|||+|.+. ....+.||.
T Consensus 77 C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NALLK 139 (535)
T PRK08451 77 CQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNALLK 139 (535)
T ss_pred HHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHH
Confidence 122222211 0123456666654332 123699999999883 345678888
Q ss_pred HhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHH
Q 005661 320 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGA 398 (685)
Q Consensus 320 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sga 398 (685)
.|+.. ...+.+|.+|+.+..|.+++++ |. .+++|.+++.++..+.++..+.+....- +-.+..|+....| +.+
T Consensus 140 ~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 88853 4567777778888999999988 75 4889999999999999888887653322 2235567777665 777
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 399 DLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 399 dI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
++.+++..+...+ ...||.+++...
T Consensus 214 ~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 214 DTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 7778877766554 346788777654
No 122
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.48 E-value=2.1e-13 Score=146.93 Aligned_cols=218 Identities=24% Similarity=0.327 Sum_probs=132.5
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-------CCCE--EEeec
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------GVPF--FSCSG 260 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-------~~~f--i~vs~ 260 (685)
...|++|+|++++++.|.-.+- ++ | -.++||+||||||||++||++++-+ ++++ ..+.+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~---~~------~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI---DP------G---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh---cc------C---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 4679999999999888774221 11 1 1269999999999999999999987 3321 11110
Q ss_pred c-ch---------------hhhHhhhhhHHHH------H-------HHHH--HHhCCCeEEEEcCchhhcCCCCCCchHH
Q 005661 261 S-EF---------------EEMFVGVGARRVR------D-------LFSA--AKKRSPCIIFIDEIDAIGGSRNPKDQQY 309 (685)
Q Consensus 261 s-~l---------------~~~~~g~~~~~ir------~-------lF~~--A~~~~P~ILfIDEID~l~~~r~~~~~~~ 309 (685)
. ++ .....+.+...+- . .|.. .......+|||||++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~---------- 141 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE---------- 141 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC----------
Confidence 0 00 0000000000000 0 0110 001123599999999873
Q ss_pred HHHHHHHHHHHhhcc-----------ccCCCEEEEEecCCcC-cCcccccCCCCcccccccCCCCH-HHHHHHHHHHhhh
Q 005661 310 MKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVVPNPDV-EGRRQIMESHMSK 376 (685)
Q Consensus 310 ~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~i~~Pd~-~eR~~ILk~~l~~ 376 (685)
..++..|+..|+.- .....+++|+++|..+ .++++|+. ||...+.+++|.. ++|.+|++.....
T Consensus 142 -~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~~ 218 (334)
T PRK13407 142 -DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDAY 218 (334)
T ss_pred -HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhcc
Confidence 23444555545321 1345789999999655 58888887 9999999988866 8999999875421
Q ss_pred hc----c------c---------------Ccc--c------HHHHHhcCC-CCCHHHHHHHHHHHHHHHHHcCCCccCHH
Q 005661 377 VL----K------A---------------DDV--D------LMIIARGTP-GFSGADLANLVNIAALKAAMDGAKAVTMA 422 (685)
Q Consensus 377 ~~----~------~---------------~~v--d------l~~la~~t~-G~sgadI~~lv~~A~~~A~~~~~~~It~e 422 (685)
.. . . ..+ + +..++..+. .-.-++|. +++.|...|+.++++.|+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~~ 297 (334)
T PRK13407 219 DADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVGRS 297 (334)
T ss_pred cccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeCHH
Confidence 10 0 0 001 0 111222222 12345565 99999999999999999999
Q ss_pred HHHHHHHHHhc
Q 005661 423 DLEYAKDKIMM 433 (685)
Q Consensus 423 dl~~A~~~v~~ 433 (685)
|+..+..-++.
T Consensus 298 Di~~~~~~vl~ 308 (334)
T PRK13407 298 HLRSVATMALS 308 (334)
T ss_pred HHHHHHHHhhh
Confidence 99887755543
No 123
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.48 E-value=8.6e-13 Score=140.71 Aligned_cols=203 Identities=22% Similarity=0.255 Sum_probs=130.6
Q ss_pred CCCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC-----CCEEEeecc
Q 005661 187 LESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCSGS 261 (685)
Q Consensus 187 ~~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~-----~~fi~vs~s 261 (685)
...+.+|+|++|.+++++.+...+.. ...| ++||+||||||||++++++++++. .+++.++++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~ 77 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKE-----------KNMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS 77 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhC-----------CCCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc
Confidence 34567899999999999888877642 1122 589999999999999999999873 345555544
Q ss_pred chhhhHhhhhhHHHHHHHHH-HHh-----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEe
Q 005661 262 EFEEMFVGVGARRVRDLFSA-AKK-----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA 335 (685)
Q Consensus 262 ~l~~~~~g~~~~~ir~lF~~-A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 335 (685)
+-.. ...++..+.. +.. ..+.+|+|||+|.+.. ...+.|+..++.... ...+|.+
T Consensus 78 ~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~le~~~~--~~~lIl~ 138 (319)
T PRK00440 78 DERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTMEMYSQ--NTRFILS 138 (319)
T ss_pred cccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHHhcCCC--CCeEEEE
Confidence 3211 1112222211 211 2356999999998731 112344444554333 3456667
Q ss_pred cCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005661 336 TNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 414 (685)
Q Consensus 336 TN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 414 (685)
+|.+..+.+.+.+ |+. .+++++|+.++...+++.++.+.... .+-.+..++..+.| |++.+++.....+..
T Consensus 139 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g----d~r~~~~~l~~~~~~- 210 (319)
T PRK00440 139 CNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG----DMRKAINALQAAAAT- 210 (319)
T ss_pred eCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHc-
Confidence 7777777777776 665 58999999999999999998765432 12235566666544 555554444333222
Q ss_pred CCCccCHHHHHHHHH
Q 005661 415 GAKAVTMADLEYAKD 429 (685)
Q Consensus 415 ~~~~It~edl~~A~~ 429 (685)
...||.+++..++.
T Consensus 211 -~~~it~~~v~~~~~ 224 (319)
T PRK00440 211 -GKEVTEEAVYKITG 224 (319)
T ss_pred -CCCCCHHHHHHHhC
Confidence 36799999987753
No 124
>PRK08727 hypothetical protein; Validated
Probab=99.48 E-value=2.3e-12 Score=132.53 Aligned_cols=206 Identities=21% Similarity=0.273 Sum_probs=125.5
Q ss_pred CCCCCCCcCCCcH-HHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccch
Q 005661 188 ESNTKFSDVKGVD-EAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEF 263 (685)
Q Consensus 188 ~~~~~f~dV~G~d-e~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l 263 (685)
.+..+|++.++.. +....+..+.. ......++|+||+|||||+|+++++.++ +...++++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~------------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAA------------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHh------------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 3566898876544 33333322211 1123469999999999999999997765 566677775544
Q ss_pred hhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC-CcCcC
Q 005661 264 EEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN-FPESL 342 (685)
Q Consensus 264 ~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN-~p~~L 342 (685)
.. .+...++... ...+|+|||++.+..+. .....+..+++.+ ... +..||+|+| .|..+
T Consensus 81 ~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~------~~~~~lf~l~n~~---~~~-~~~vI~ts~~~p~~l 140 (233)
T PRK08727 81 AG--------RLRDALEALE--GRSLVALDGLESIAGQR------EDEVALFDFHNRA---RAA-GITLLYTARQMPDGL 140 (233)
T ss_pred hh--------hHHHHHHHHh--cCCEEEEeCcccccCCh------HHHHHHHHHHHHH---HHc-CCeEEEECCCChhhh
Confidence 32 2333444433 34699999999885432 1222333444333 222 333444444 56544
Q ss_pred ---cccccCCCCc--ccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 005661 343 ---DKALVRPGRF--DRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA 416 (685)
Q Consensus 343 ---D~aLlRpgRF--d~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~ 416 (685)
++.|.+ || ...+.+++|+.+++.+|++.++...... ++-.+..|+..+.| +.+.+.++++.....+...+
T Consensus 141 ~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~- 216 (233)
T PRK08727 141 ALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK- 216 (233)
T ss_pred hhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-
Confidence 688887 76 4577999999999999999877653222 12224567777664 44555555765544444444
Q ss_pred CccCHHHHHHHHH
Q 005661 417 KAVTMADLEYAKD 429 (685)
Q Consensus 417 ~~It~edl~~A~~ 429 (685)
+.||...+++.+.
T Consensus 217 ~~it~~~~~~~l~ 229 (233)
T PRK08727 217 RRVTVPFLRRVLE 229 (233)
T ss_pred CCCCHHHHHHHHh
Confidence 5789888887764
No 125
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.48 E-value=2e-13 Score=149.03 Aligned_cols=176 Identities=29% Similarity=0.406 Sum_probs=125.7
Q ss_pred CcCCCcHHHHHHHHHHHHH-hcCchhhhhhC-CCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh-hHhh-
Q 005661 194 SDVKGVDEAKQELEEIVHY-LRDPKRFTRLG-GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-MFVG- 269 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g-~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~-~~~g- 269 (685)
..|+|++++|+.+...+.. ++.......+. -..|+++||+||||+|||++|++||+.++.||+.++++.|.+ .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 3499999999999876642 22111111111 123689999999999999999999999999999999998886 4877
Q ss_pred hhhHHHHHHHHHHH------------------------------------------------------------------
Q 005661 270 VGARRVRDLFSAAK------------------------------------------------------------------ 283 (685)
Q Consensus 270 ~~~~~ir~lF~~A~------------------------------------------------------------------ 283 (685)
..+..++.+|..|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 34556666666551
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 005661 284 ------------------------------------------------------------------------KRSPCIIF 291 (685)
Q Consensus 284 ------------------------------------------------------------------------~~~P~ILf 291 (685)
...-+|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01346999
Q ss_pred EcCchhhcCCCCCCc-hHHHHHHHHHHHHHhhcc--------ccCCCEEEEEecC----CcCcCcccccCCCCccccccc
Q 005661 292 IDEIDAIGGSRNPKD-QQYMKMTLNQLLVELDGF--------KQNEGIIVIAATN----FPESLDKALVRPGRFDRHIVV 358 (685)
Q Consensus 292 IDEID~l~~~r~~~~-~~~~~~~l~~LL~~ld~~--------~~~~~ViVIaaTN----~p~~LD~aLlRpgRFd~~I~i 358 (685)
|||||.|..+..+.. +-....+...||..++|- -...+|++|++-- .|+.|-|.|. |||..++.+
T Consensus 255 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 332 (443)
T PRK05201 255 IDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVEL 332 (443)
T ss_pred EEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 999999987643222 122344667788777773 2346788887654 3555667776 599999999
Q ss_pred CCCCHHHHHHHHH
Q 005661 359 PNPDVEGRRQIME 371 (685)
Q Consensus 359 ~~Pd~~eR~~ILk 371 (685)
..++.++..+||.
T Consensus 333 ~~L~~~dL~~ILt 345 (443)
T PRK05201 333 DALTEEDFVRILT 345 (443)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999883
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=2.3e-12 Score=144.50 Aligned_cols=190 Identities=16% Similarity=0.229 Sum_probs=127.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEeeccchhhhHhhhhhH---HHHHHHHHHHhCCCeEEEEcCchhhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEFEEMFVGVGAR---RVRDLFSAAKKRSPCIIFIDEIDAIG 299 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs~s~l~~~~~g~~~~---~ir~lF~~A~~~~P~ILfIDEID~l~ 299 (685)
.+++|||++|+|||+|++++++++ +..++++++.+|...+...... .+....... ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 479999999999999999999854 5788899998888765543221 122222222 346799999999885
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc---CcccccCCCCccc--ccccCCCCHHHHHHHHHHHh
Q 005661 300 GSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES---LDKALVRPGRFDR--HIVVPNPDVEGRRQIMESHM 374 (685)
Q Consensus 300 ~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~---LD~aLlRpgRFd~--~I~i~~Pd~~eR~~ILk~~l 374 (685)
++. ..+..+..+++.+. ..++.+||.+...|.. +++.|.+ ||.. .+.+.+|+.++|.+||+.++
T Consensus 220 ~k~------~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 220 YKE------KTNEIFFTIFNNFI---ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred CCH------HHHHHHHHHHHHHH---HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHH
Confidence 331 22233333333332 2333344444344443 5677777 7754 56789999999999999999
Q ss_pred hhhcccCccc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC-CCccCHHHHHHHHHHH
Q 005661 375 SKVLKADDVD---LMIIARGTPGFSGADLANLVNIAALKAAMDG-AKAVTMADLEYAKDKI 431 (685)
Q Consensus 375 ~~~~~~~~vd---l~~la~~t~G~sgadI~~lv~~A~~~A~~~~-~~~It~edl~~A~~~v 431 (685)
+.......++ +..|+....| +.+.+.++|+.....+.... ...|+.+.+.+++..+
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 7643211232 4457777765 88999999998876665542 3679999999998765
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.7e-12 Score=150.30 Aligned_cols=210 Identities=19% Similarity=0.216 Sum_probs=138.7
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEE---eecc---
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS---CSGS--- 261 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~---vs~s--- 261 (685)
..+.+|+||+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+++.... ..|.
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 3456899999999999998877652 2456678999999999999999999988642210 0010
Q ss_pred ---chhhh----H------hhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc
Q 005661 262 ---EFEEM----F------VGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF 324 (685)
Q Consensus 262 ---~l~~~----~------~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~ 324 (685)
.+... + ...+...++++.+.+.. ....|+||||+|.|. ...++.||..|+..
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~naLLk~LEep 147 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAFNALLKTLEEP 147 (585)
T ss_pred HHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHHHHHHHHHhcC
Confidence 00000 0 01122334555444322 234699999999883 23467788777743
Q ss_pred ccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHHHHHH
Q 005661 325 KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANL 403 (685)
Q Consensus 325 ~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgadI~~l 403 (685)
...+++|.+|+..+.+.+.+.+ |+. .+.|+.++..+...+++..+.+....- +-.+..|+..+.| +.+++.+.
T Consensus 148 --p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~ 221 (585)
T PRK14950 148 --PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENL 221 (585)
T ss_pred --CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 3456777777777778888876 664 688999999999998888876643321 1224567776655 66667666
Q ss_pred HHHHHHHHHHcCCCccCHHHHHHHHH
Q 005661 404 VNIAALKAAMDGAKAVTMADLEYAKD 429 (685)
Q Consensus 404 v~~A~~~A~~~~~~~It~edl~~A~~ 429 (685)
++....+ +...|+.+++...+.
T Consensus 222 LekL~~y----~~~~It~e~V~~ll~ 243 (585)
T PRK14950 222 LQQLATT----YGGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHh----cCCCCCHHHHHHHhc
Confidence 6654332 345799998877653
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.9e-12 Score=149.96 Aligned_cols=205 Identities=19% Similarity=0.248 Sum_probs=137.7
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEE----eecc---
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS----CSGS--- 261 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~----vs~s--- 261 (685)
.+.+|++|+|++.+++.|+..+.. .+.+.++||+||||+|||++|+++|+.+++.... ..|.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 457899999999999999887763 2345589999999999999999999998763110 0111
Q ss_pred -----------chh--hhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc
Q 005661 262 -----------EFE--EMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF 324 (685)
Q Consensus 262 -----------~l~--~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~ 324 (685)
++. +.....+...+|++...+.. ....|+||||+|.|. ....+.||..|+.
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naLLK~LEe- 147 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNALLKTLEE- 147 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHHHHHHhc-
Confidence 000 00112344677888776643 234699999999883 3456788888883
Q ss_pred ccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHH
Q 005661 325 KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANL 403 (685)
Q Consensus 325 ~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~l 403 (685)
....+++|++|+.++.+-+.+++ |+. .+.|+.++.++....++..+.+.... ....+..++..+.| +.+++.++
T Consensus 148 -Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~l 222 (620)
T PRK14948 148 -PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESL 222 (620)
T ss_pred -CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 45668888888888888888887 764 67888898888888777777654322 11225566777655 44555566
Q ss_pred HHHHHHHHHHcCCCccCHHHHHH
Q 005661 404 VNIAALKAAMDGAKAVTMADLEY 426 (685)
Q Consensus 404 v~~A~~~A~~~~~~~It~edl~~ 426 (685)
++..... . ..|+.+++..
T Consensus 223 LeklsL~---~--~~It~e~V~~ 240 (620)
T PRK14948 223 LDQLSLL---P--GPITPEAVWD 240 (620)
T ss_pred HHHHHhc---c--CCCCHHHHHH
Confidence 5543322 1 2466666553
No 129
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2e-12 Score=149.38 Aligned_cols=214 Identities=18% Similarity=0.234 Sum_probs=140.4
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEE----------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS---------- 257 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~---------- 257 (685)
..+.+|+||+|++.+++.|+..+. ..+.|.++||+||||+|||++|+.+|+.+.+.--.
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 345689999999999999887665 34677789999999999999999999998762100
Q ss_pred eeccc------hhh-------hHhh---hhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHH
Q 005661 258 CSGSE------FEE-------MFVG---VGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQL 317 (685)
Q Consensus 258 vs~s~------l~~-------~~~g---~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~L 317 (685)
-.|.. +.. .+.+ .+...++++.+.+. .....|++|||+|.+. ....+.|
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----------~~a~naL 147 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----------TAAFNAF 147 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------HHHHHHH
Confidence 01110 100 0011 12345566555442 2234699999999883 2346778
Q ss_pred HHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCC
Q 005661 318 LVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFS 396 (685)
Q Consensus 318 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~s 396 (685)
+..|+. ....+++|.+|+.+..|-+.+.+ |. ..++|..++.++....++..+.+.... .+-.+..|+..+.| +
T Consensus 148 LK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-d 221 (620)
T PRK14954 148 LKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-S 221 (620)
T ss_pred HHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 877774 33456666677777888888887 66 478999999999888888877654321 22235567776654 5
Q ss_pred HHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHHH
Q 005661 397 GADLANLVNIAALKAAM-DGAKAVTMADLEYAKD 429 (685)
Q Consensus 397 gadI~~lv~~A~~~A~~-~~~~~It~edl~~A~~ 429 (685)
.+++.+.++....++.. .....|+.+++.+.+.
T Consensus 222 lr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 222 MRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred HHHHHHHHHHHHHhccccccCCccCHHHHHHHHc
Confidence 55555555544444311 2256789888877653
No 130
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.45 E-value=1.5e-12 Score=143.59 Aligned_cols=177 Identities=28% Similarity=0.361 Sum_probs=115.2
Q ss_pred cCCCcHHHHHHHHHHHHH----hcCc-hhhhhhCCCC-CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh-hH
Q 005661 195 DVKGVDEAKQELEEIVHY----LRDP-KRFTRLGGKL-PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-MF 267 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~----l~~~-~~~~~~g~~~-pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~-~~ 267 (685)
-|+|++++++.+...+.. +... ......+... +.++||+||||||||++|+++|..++.||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 479999999999766521 1110 0000001111 357999999999999999999999999999999988754 47
Q ss_pred hhhh-hHHHHHHHHHH----HhCCCeEEEEcCchhhcCCCCCCc---hHHHHHHHHHHHHHhhccc-----------cCC
Q 005661 268 VGVG-ARRVRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKD---QQYMKMTLNQLLVELDGFK-----------QNE 328 (685)
Q Consensus 268 ~g~~-~~~ir~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~---~~~~~~~l~~LL~~ld~~~-----------~~~ 328 (685)
+|.. ...+..++..+ ....++||||||||.+..++.... ...-..+.+.||..|+|.. ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7764 33344444322 234678999999999986532211 0011234556666666532 123
Q ss_pred CEEEEEecCCcC--------------------------------------------------cCcccccCCCCccccccc
Q 005661 329 GIIVIAATNFPE--------------------------------------------------SLDKALVRPGRFDRHIVV 358 (685)
Q Consensus 329 ~ViVIaaTN~p~--------------------------------------------------~LD~aLlRpgRFd~~I~i 358 (685)
+.++|.|+|-.. .+.|.|+ ||+|.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 578888888510 0224444 499989999
Q ss_pred CCCCHHHHHHHHHHH
Q 005661 359 PNPDVEGRRQIMESH 373 (685)
Q Consensus 359 ~~Pd~~eR~~ILk~~ 373 (685)
.+.+.++..+|+...
T Consensus 316 ~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 316 EKLDEEALIAILTKP 330 (413)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998764
No 131
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.45 E-value=8.1e-13 Score=142.79 Aligned_cols=220 Identities=24% Similarity=0.267 Sum_probs=138.3
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC-------CCEEEeecc
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-------VPFFSCSGS 261 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~-------~~fi~vs~s 261 (685)
+...|++|+|++++|..|.-.+. +|. ..|+||.||+|||||++||++++.+. .||. ....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~---~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVI---DPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhcc---CCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 34579999999999988874332 221 24899999999999999999987662 2442 1100
Q ss_pred -------chhhh-------------------HhhhhhHH------HHHHHHHHH---------hCCCeEEEEcCchhhcC
Q 005661 262 -------EFEEM-------------------FVGVGARR------VRDLFSAAK---------KRSPCIIFIDEIDAIGG 300 (685)
Q Consensus 262 -------~l~~~-------------------~~g~~~~~------ir~lF~~A~---------~~~P~ILfIDEID~l~~ 300 (685)
.+... ..|.+..+ +...|.... ....++|||||++.+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 00000 01111111 111111110 1223699999999883
Q ss_pred CCCCCchHHHHHHHHHHHHHhhc---------c--ccCCCEEEEEecCCcC-cCcccccCCCCcccccccCCCC-HHHHH
Q 005661 301 SRNPKDQQYMKMTLNQLLVELDG---------F--KQNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVVPNPD-VEGRR 367 (685)
Q Consensus 301 ~r~~~~~~~~~~~l~~LL~~ld~---------~--~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~i~~Pd-~~eR~ 367 (685)
..+...|+..|+. . ....++++|++.|..+ .+.++|+. ||..++.+..|+ .+.+.
T Consensus 158 ----------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 158 ----------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred ----------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 2233444444432 1 1235688888888655 58888888 999999999997 69999
Q ss_pred HHHHHHhhhh--cc-----------------------cCccc--------HHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005661 368 QIMESHMSKV--LK-----------------------ADDVD--------LMIIARGTPGFSGADLANLVNIAALKAAMD 414 (685)
Q Consensus 368 ~ILk~~l~~~--~~-----------------------~~~vd--------l~~la~~t~G~sgadI~~lv~~A~~~A~~~ 414 (685)
+|++...... .. ...+. +..++..+.--+++--..+++.|..+|+.+
T Consensus 226 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 226 KIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred HHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHc
Confidence 9998754210 00 00111 112333333335666667888899999999
Q ss_pred CCCccCHHHHHHHHHHHhcc
Q 005661 415 GAKAVTMADLEYAKDKIMMG 434 (685)
Q Consensus 415 ~~~~It~edl~~A~~~v~~g 434 (685)
+++.|+.+|+..+..-++..
T Consensus 306 GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 306 GRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998877654
No 132
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.44 E-value=7.7e-13 Score=155.94 Aligned_cols=166 Identities=22% Similarity=0.297 Sum_probs=115.5
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCC-eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh-----hHh
Q 005661 195 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK-GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-----MFV 268 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pk-gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~-----~~~ 268 (685)
.|+|++++++.+.+.+...+..- .....|. .+||+||||||||.+|+++|+.++.+|+.++++++.+ .+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl----~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL----GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc----cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 37899999999988876532110 0012344 5999999999999999999999999999999998754 233
Q ss_pred hhhhHH-----HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--c-------cCCCEEEEE
Q 005661 269 GVGARR-----VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--K-------QNEGIIVIA 334 (685)
Q Consensus 269 g~~~~~-----ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~--~-------~~~~ViVIa 334 (685)
|..... -..+....+.+..|||||||||.+. ..+.+.|+..||.- . ...++++|+
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-----------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~ 603 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh-----------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEE
Confidence 321111 1123334455666999999999883 33556666666521 1 124688999
Q ss_pred ecCCc-------------------------CcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhh
Q 005661 335 ATNFP-------------------------ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV 377 (685)
Q Consensus 335 aTN~p-------------------------~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~ 377 (685)
|||.- ..+.|.|+. |+|.+|.|++.+.++..+|+..++.+.
T Consensus 604 TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~ 669 (758)
T PRK11034 604 TTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_pred eCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 99932 124466665 999999999999999999998887643
No 133
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.42 E-value=2.1e-12 Score=144.97 Aligned_cols=208 Identities=24% Similarity=0.341 Sum_probs=154.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------EEEe-e
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------FFSC-S 259 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------fi~v-s 259 (685)
+.+.+|+||+|++.+...|++.+.. .+...+.||+||.|||||++||.+|+.+++. +-.+ +
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 3456899999999999999988874 3445589999999999999999999988653 2111 1
Q ss_pred ccch--------hhh--HhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 005661 260 GSEF--------EEM--FVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK 325 (685)
Q Consensus 260 ~s~l--------~~~--~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~ 325 (685)
|..+ .+. -...+...+|++.+.+.- ...-|.+|||++.+ .....|.||..++ .
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLE--E 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLE--E 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhcccc--c
Confidence 1111 111 111244567777777642 33469999999977 4667899999988 5
Q ss_pred cCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhcCCCCCHHHHHHHH
Q 005661 326 QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLV 404 (685)
Q Consensus 326 ~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~t~G~sgadI~~lv 404 (685)
++.+|++|.+|..++.+++.+++ |+. ++.|..-+.++....|+..+.+.....+.+ +..+++...| |.+|...++
T Consensus 146 PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 77889999999999999999997 664 667888899999998888887765544433 5667888776 889999999
Q ss_pred HHHHHHHHHcCCCccCHHHHHHH
Q 005661 405 NIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 405 ~~A~~~A~~~~~~~It~edl~~A 427 (685)
+++.... ...|+.+++...
T Consensus 222 Dq~i~~~----~~~It~~~v~~~ 240 (515)
T COG2812 222 DQAIAFG----EGEITLESVRDM 240 (515)
T ss_pred HHHHHcc----CCcccHHHHHHH
Confidence 9887654 256777666544
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.42 E-value=4.6e-12 Score=129.42 Aligned_cols=164 Identities=22% Similarity=0.371 Sum_probs=119.1
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 265 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~ 265 (685)
..+.+++|+|++.+|+.|.+-...+- .+.+..++||+|++|||||+++|++..+. |..++.+...++..
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~ 93 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFL--------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD 93 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHH--------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc
Confidence 46889999999999999886554322 34567789999999999999999999866 77888888766643
Q ss_pred hHhhhhhHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCcCcC
Q 005661 266 MFVGVGARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--KQNEGIIVIAATNFPESL 342 (685)
Q Consensus 266 ~~~g~~~~~ir~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~--~~~~~ViVIaaTN~p~~L 342 (685)
+..+++..+. ..+-|||+|++. + ...+.. - ..|-..|||- ..+.+|+|.+|+|+-..+
T Consensus 94 ---------l~~l~~~l~~~~~kFIlf~DDLs-F----e~~d~~--y---k~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 94 ---------LPELLDLLRDRPYKFILFCDDLS-F----EEGDTE--Y---KALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ---------HHHHHHHHhcCCCCEEEEecCCC-C----CCCcHH--H---HHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 4556666553 346799999965 2 112222 2 3333345553 456789999999976544
Q ss_pred cccc----------cCC-----------CCcccccccCCCCHHHHHHHHHHHhhhhcc
Q 005661 343 DKAL----------VRP-----------GRFDRHIVVPNPDVEGRRQIMESHMSKVLK 379 (685)
Q Consensus 343 D~aL----------lRp-----------gRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~ 379 (685)
.+.. +.| .||...|.|.+||.++-.+|+++++.+...
T Consensus 155 ~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~ 212 (249)
T PF05673_consen 155 PESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGL 212 (249)
T ss_pred chhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3221 112 399999999999999999999999976544
No 135
>PRK05642 DNA replication initiation factor; Validated
Probab=99.42 E-value=8.6e-12 Score=128.44 Aligned_cols=211 Identities=17% Similarity=0.175 Sum_probs=130.3
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 264 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~ 264 (685)
.++.+|++.+...+ ....+.+..+.. ..+.....+++|+||+|+|||+|++++++++ +..+++++..++.
T Consensus 13 ~~~~tfdnF~~~~~--~~a~~~~~~~~~-----~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 13 RDDATFANYYPGAN--AAALGYVERLCE-----ADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CCcccccccCcCCh--HHHHHHHHHHhh-----ccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 45678999873222 223333332111 0011123579999999999999999998764 6678888887765
Q ss_pred hhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC--
Q 005661 265 EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL-- 342 (685)
Q Consensus 265 ~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L-- 342 (685)
... ..+.+..+.. .+|+|||++.+.++. ..+..+-.++ +.+...+..+||+++..|..+
T Consensus 86 ~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~------~~~~~Lf~l~---n~~~~~g~~ilits~~~p~~l~~ 146 (234)
T PRK05642 86 DRG--------PELLDNLEQY--ELVCLDDLDVIAGKA------DWEEALFHLF---NRLRDSGRRLLLAASKSPRELPI 146 (234)
T ss_pred hhh--------HHHHHhhhhC--CEEEEechhhhcCCh------HHHHHHHHHH---HHHHhcCCEEEEeCCCCHHHcCc
Confidence 421 2233333332 489999999885432 1222333333 333344566777776666543
Q ss_pred -cccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 005661 343 -DKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKA 418 (685)
Q Consensus 343 -D~aLlRpgRFd--~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~ 418 (685)
.+.|.+ ||. ..+.+.+|+.++|.+|++..+...... ++--++.|++...+ +.+.+.++++.-.. +.....+.
T Consensus 147 ~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~-~~l~~~~~ 222 (234)
T PRK05642 147 KLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQ-ASLQAQRK 222 (234)
T ss_pred cCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH-HHHHcCCc
Confidence 578887 774 466789999999999999766543221 11124456777664 78888888886654 33334466
Q ss_pred cCHHHHHHHH
Q 005661 419 VTMADLEYAK 428 (685)
Q Consensus 419 It~edl~~A~ 428 (685)
||..-+++++
T Consensus 223 it~~~~~~~L 232 (234)
T PRK05642 223 LTIPFLKETL 232 (234)
T ss_pred CCHHHHHHHh
Confidence 8887777664
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.41 E-value=4.1e-12 Score=150.75 Aligned_cols=163 Identities=27% Similarity=0.360 Sum_probs=116.0
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCC---CCCCe-EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh---
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGG---KLPKG-VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--- 266 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~---~~pkg-vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~--- 266 (685)
..|+|++++++.+.+.+... +.|. ..|.+ +||+||||||||++|+++|+.++.+++.++++++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~-------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS-------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH-------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 34788888888887776542 1222 23554 8999999999999999999999999999999987542
Q ss_pred --Hhhhh-----hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCCE
Q 005661 267 --FVGVG-----ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEGI 330 (685)
Q Consensus 267 --~~g~~-----~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~---------~~~~V 330 (685)
+.|.. ......+.+..+.+..+||||||||.+. ....+.|+..||... ...++
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~-----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH-----------PDIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC-----------HHHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 22221 1122334445566677999999999772 234555666565421 12468
Q ss_pred EEEEecCCcC-------------------------cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhh
Q 005661 331 IVIAATNFPE-------------------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSK 376 (685)
Q Consensus 331 iVIaaTN~p~-------------------------~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~ 376 (685)
++|+|||... .+.|.|+. |||.+|.|.+.+.++..+|++..+.+
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 8999998642 13455554 99999999999999999999999865
No 137
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=8e-12 Score=144.87 Aligned_cols=202 Identities=20% Similarity=0.244 Sum_probs=139.2
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC--------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 254 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------------- 254 (685)
.+.+|+||+|++.+++.|...+. ..+.|..+|||||+|+|||++|+.+|+.+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 45789999999999998887765 24567789999999999999999999987542
Q ss_pred -----------EEEeeccchhhhHhhhhhHHHHHHHHHHHhC----CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 255 -----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKKR----SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 255 -----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
++.+++++ ..+...++.+...+... ..-|++|||+|.+. ....+.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----------~~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----------QAAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------HHHHHHHHH
Confidence 22222211 01134466666555322 23599999999883 234677888
Q ss_pred HhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCCHH
Q 005661 320 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGA 398 (685)
Q Consensus 320 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~sga 398 (685)
.|+. ....+++|.+|+.+..|-+.+++ |+. .+.|.+++.++....++..+.+....-+ -.+..|+..+.| +.+
T Consensus 144 ~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr 217 (614)
T PRK14971 144 TLEE--PPSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMR 217 (614)
T ss_pred HHhC--CCCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 7774 34566777777777888889887 764 6899999999999998888876544322 235567776643 555
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 399 DLANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 399 dI~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
++.+++.....++ +.. |+.+++.+.+
T Consensus 218 ~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 218 DALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 5555555443332 333 8887776654
No 138
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.39 E-value=4.2e-12 Score=129.49 Aligned_cols=200 Identities=23% Similarity=0.301 Sum_probs=121.4
Q ss_pred CCCCCCCcCC-Cc--HHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEee
Q 005661 188 ESNTKFSDVK-GV--DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS 259 (685)
Q Consensus 188 ~~~~~f~dV~-G~--de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs 259 (685)
.++.+|++.+ |. ..+...++.+.+. +. ..-..++||||+|+|||+|.+++++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~---~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAEN---PG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHS---TT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhc---CC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3567899985 53 3334444444332 21 122359999999999999999999875 67799999
Q ss_pred ccchhhhHhhhhhH-HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 260 GSEFEEMFVGVGAR-RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 260 ~s~l~~~~~g~~~~-~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
+.+|...+...... .+..+....+ ...+|+||+++.+.++ .. +...|+..++.+...++.+||.+...
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~------~~---~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK------QR---TQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH------HH---HHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc------hH---HHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 99988765543222 2223323332 4469999999998532 22 23334444444445566677766666
Q ss_pred cCc---CcccccCCCCccc--ccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005661 339 PES---LDKALVRPGRFDR--HIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNIAALKA 411 (685)
Q Consensus 339 p~~---LD~aLlRpgRFd~--~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~t~G~sgadI~~lv~~A~~~A 411 (685)
|.. +++.|.+ ||.. .+.+.+|+.+.|.+|++..+......-+-+ ...|+...+ -+.++|..+++.-..++
T Consensus 141 P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 141 PSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred CccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 665 4567776 7765 668899999999999999998765442222 334666655 47788888887665544
No 139
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.39 E-value=6.9e-12 Score=115.84 Aligned_cols=120 Identities=48% Similarity=0.697 Sum_probs=82.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhhhhHH---HHHHHHHHHhCCCeEEEEcCchhhcC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVGARR---VRDLFSAAKKRSPCIIFIDEIDAIGG 300 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~~~~~---ir~lF~~A~~~~P~ILfIDEID~l~~ 300 (685)
.++++|+||||||||++++.+++.+ +.+++.+++..+........... ....+.......+++|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 4579999999999999999999998 89999999887765433222111 1222334445678999999999772
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcccc----CCCEEEEEecCCcC--cCcccccCCCCcccccccC
Q 005661 301 SRNPKDQQYMKMTLNQLLVELDGFKQ----NEGIIVIAATNFPE--SLDKALVRPGRFDRHIVVP 359 (685)
Q Consensus 301 ~r~~~~~~~~~~~l~~LL~~ld~~~~----~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~i~ 359 (685)
... ...++..+..+.. ..++.+|+++|... .+++.+.. ||+.++.++
T Consensus 98 -------~~~---~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 -------RGA---QNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred -------HHH---HHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 111 2233333333222 46789999999877 56777776 898777765
No 140
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.38 E-value=4.3e-12 Score=137.02 Aligned_cols=218 Identities=24% Similarity=0.277 Sum_probs=134.9
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-------CCCEE--------
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------GVPFF-------- 256 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-------~~~fi-------- 256 (685)
.|+.|+|++++|..|.-.+ -+|. ..+++|.|+||+|||++++++++.+ ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4899999999988775221 1221 2379999999999999999999877 33332
Q ss_pred -Eeeccc----------------hhhhHhhhhhHHHHHH--HHHH-------------HhCCCeEEEEcCchhhcCCCCC
Q 005661 257 -SCSGSE----------------FEEMFVGVGARRVRDL--FSAA-------------KKRSPCIIFIDEIDAIGGSRNP 304 (685)
Q Consensus 257 -~vs~s~----------------l~~~~~g~~~~~ir~l--F~~A-------------~~~~P~ILfIDEID~l~~~r~~ 304 (685)
..+|.. |.+...|.....+-.- +..+ ......+|||||++.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~----- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE----- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC-----
Confidence 001110 0111111111111000 0000 11224699999999873
Q ss_pred CchHHHHHHHHHHHHHhhc----c-------ccCCCEEEEEecCCcC-cCcccccCCCCcccccccCCCCH-HHHHHHHH
Q 005661 305 KDQQYMKMTLNQLLVELDG----F-------KQNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVVPNPDV-EGRRQIME 371 (685)
Q Consensus 305 ~~~~~~~~~l~~LL~~ld~----~-------~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~i~~Pd~-~eR~~ILk 371 (685)
..+...|+..|+. + ....++++|+++|..+ .+.++|+. ||..++.++.|+. ++|.+|++
T Consensus 145 ------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~ 216 (337)
T TIGR02030 145 ------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVE 216 (337)
T ss_pred ------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHH
Confidence 2233444444432 1 1234688899988655 58889998 9999999988875 88999998
Q ss_pred HHhhhh----c----c-----------------cCcc--c------HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 005661 372 SHMSKV----L----K-----------------ADDV--D------LMIIARGTPGFSGADLANLVNIAALKAAMDGAKA 418 (685)
Q Consensus 372 ~~l~~~----~----~-----------------~~~v--d------l~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~ 418 (685)
...... . . ..++ + +..++..+..-+.+--..+++-|..+|+.++++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~ 296 (337)
T TIGR02030 217 RRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTE 296 (337)
T ss_pred hhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCC
Confidence 743210 0 0 0111 1 1223333433355666788899999999999999
Q ss_pred cCHHHHHHHHHHHhcc
Q 005661 419 VTMADLEYAKDKIMMG 434 (685)
Q Consensus 419 It~edl~~A~~~v~~g 434 (685)
|+.+|+..+..-++..
T Consensus 297 V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 297 VTVDDIRRVAVLALRH 312 (337)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998877653
No 141
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.38 E-value=1.9e-11 Score=128.85 Aligned_cols=99 Identities=25% Similarity=0.190 Sum_probs=72.2
Q ss_pred EEEEEecCC------------cCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCC
Q 005661 330 IIVIAATNF------------PESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFS 396 (685)
Q Consensus 330 ViVIaaTN~------------p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~s 396 (685)
-+||++||+ |.-++..|+. |+ .+|...+++.++.++|++..++.....- +-.++.|+.....-|
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etS 397 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETS 397 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhh
Confidence 377888884 3445666654 55 3667788999999999999987643322 222555666655555
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 397 GADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 397 gadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
-+--.+|+.-|...|.++++..|..+|+++|.+-.
T Consensus 398 LRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred HHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 56666888899999999999999999999997644
No 142
>PRK06620 hypothetical protein; Validated
Probab=99.36 E-value=1.9e-11 Score=124.23 Aligned_cols=195 Identities=13% Similarity=0.185 Sum_probs=121.0
Q ss_pred CCCCCCCcCCCcH---HHHHHHHHHHHHhcCchhhhhhCCCCC--CeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccc
Q 005661 188 ESNTKFSDVKGVD---EAKQELEEIVHYLRDPKRFTRLGGKLP--KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 262 (685)
Q Consensus 188 ~~~~~f~dV~G~d---e~k~~L~e~v~~l~~~~~~~~~g~~~p--kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~ 262 (685)
.++.+|++++--+ .+...++++.+ .| + ..| ..++||||||+|||+|++++++..+..++. ...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------G-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH---cc------c-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 3566888865433 23344444332 11 1 123 579999999999999999999988764332 111
Q ss_pred hhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 263 FEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 263 l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
.. ...+ ....+|+|||||.+- . ..+-.+++. +...++.++|+++..|..+
T Consensus 78 ~~-----------~~~~-----~~~d~lliDdi~~~~-------~----~~lf~l~N~---~~e~g~~ilits~~~p~~l 127 (214)
T PRK06620 78 FN-----------EEIL-----EKYNAFIIEDIENWQ-------E----PALLHIFNI---INEKQKYLLLTSSDKSRNF 127 (214)
T ss_pred hc-----------hhHH-----hcCCEEEEeccccch-------H----HHHHHHHHH---HHhcCCEEEEEcCCCcccc
Confidence 10 1111 123699999999541 1 122233322 2345567888887766642
Q ss_pred c-ccccCCCCccc--ccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 005661 343 D-KALVRPGRFDR--HIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKA 418 (685)
Q Consensus 343 D-~aLlRpgRFd~--~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~ 418 (685)
. ++|++ |+.. .+.+.+||.+.+..+++.++......- +--++.|+....| +.+.+.++++.....+.. ..+.
T Consensus 128 ~l~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~-~~~~ 203 (214)
T PRK06620 128 TLPDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI-SKRK 203 (214)
T ss_pred chHHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH-cCCC
Confidence 1 77777 7753 578999999999999998887543221 2224557777764 778888888875433433 3467
Q ss_pred cCHHHHHHHH
Q 005661 419 VTMADLEYAK 428 (685)
Q Consensus 419 It~edl~~A~ 428 (685)
||...+.+++
T Consensus 204 it~~~~~~~l 213 (214)
T PRK06620 204 ITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHh
Confidence 8988887764
No 143
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.36 E-value=4.7e-12 Score=147.81 Aligned_cols=215 Identities=25% Similarity=0.316 Sum_probs=138.6
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc--------------------
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------------------- 251 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-------------------- 251 (685)
.|.+|+|++.++..|.-..- ++. ..||||+||||||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 48999999999877753222 221 1369999999999999999999887
Q ss_pred ---------------CCCEEEeeccchhhhHhhhh--hHHH--------HHHHHHHHhCCCeEEEEcCchhhcCCCCCCc
Q 005661 252 ---------------GVPFFSCSGSEFEEMFVGVG--ARRV--------RDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD 306 (685)
Q Consensus 252 ---------------~~~fi~vs~s~l~~~~~g~~--~~~i--------r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 306 (685)
..||+.+.++......+|.. ...+ ..++.. ...+|||||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLD------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCC-------
Confidence 35777776665444444321 0001 111111 123599999999883
Q ss_pred hHHHHHHHHHHHHHhhcc-----------ccCCCEEEEEecCCcC-cCcccccCCCCcccccccCCCC-HHHHHHHHHHH
Q 005661 307 QQYMKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVVPNPD-VEGRRQIMESH 373 (685)
Q Consensus 307 ~~~~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~i~~Pd-~~eR~~ILk~~ 373 (685)
..+++.|+..|+.- ....++++|+++|..+ .+.++|+. ||+.+|.++.|. .+++.+|++..
T Consensus 140 ----~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 140 ----DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ----HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 33455555555421 1234689999999543 57788887 999888887764 67778887754
Q ss_pred hhhh-------------------------cccCcc--c---HHHHHhcC--CCC-CHHHHHHHHHHHHHHHHHcCCCccC
Q 005661 374 MSKV-------------------------LKADDV--D---LMIIARGT--PGF-SGADLANLVNIAALKAAMDGAKAVT 420 (685)
Q Consensus 374 l~~~-------------------------~~~~~v--d---l~~la~~t--~G~-sgadI~~lv~~A~~~A~~~~~~~It 420 (685)
+... .....+ + +..++..+ .|. +.+-...+++-|..+|..++++.|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~ 293 (633)
T TIGR02442 214 LAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVT 293 (633)
T ss_pred HhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCC
Confidence 3200 000111 1 11222211 233 3455567888888999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 005661 421 MADLEYAKDKIMMG 434 (685)
Q Consensus 421 ~edl~~A~~~v~~g 434 (685)
.+|+..|+.-++..
T Consensus 294 ~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 294 AEDVREAAELVLPH 307 (633)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887743
No 144
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.36 E-value=2.1e-12 Score=137.77 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=99.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh--HhhhhhHH----------HHHHHHHHHhCCCeEEEEcC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--FVGVGARR----------VRDLFSAAKKRSPCIIFIDE 294 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~--~~g~~~~~----------ir~lF~~A~~~~P~ILfIDE 294 (685)
.++|||.||||||||++++.+|..++.|++.++++..... ++|..... ....+..|. ..+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 4579999999999999999999999999999998876554 44432211 112233343 3468999999
Q ss_pred chhhcCCCCCCchHHHHHHHHHHHHH-----h----hccccCCCEEEEEecCCcC------------cCcccccCCCCcc
Q 005661 295 IDAIGGSRNPKDQQYMKMTLNQLLVE-----L----DGFKQNEGIIVIAATNFPE------------SLDKALVRPGRFD 353 (685)
Q Consensus 295 ID~l~~~r~~~~~~~~~~~l~~LL~~-----l----d~~~~~~~ViVIaaTN~p~------------~LD~aLlRpgRFd 353 (685)
||..- ......++.+|.. + ..+....++.||+|+|..+ .++++++. ||-
T Consensus 143 in~a~--------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~ 212 (327)
T TIGR01650 143 YDAGR--------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWS 212 (327)
T ss_pred hhccC--------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--hee
Confidence 99762 2244555666552 1 1123445799999999764 36788887 998
Q ss_pred cccccCCCCHHHHHHHHHHHhh
Q 005661 354 RHIVVPNPDVEGRRQIMESHMS 375 (685)
Q Consensus 354 ~~I~i~~Pd~~eR~~ILk~~l~ 375 (685)
.++.++.|+.++-.+|+.....
T Consensus 213 i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 213 IVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eEeeCCCCCHHHHHHHHHhhcc
Confidence 7889999999999999987654
No 145
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.35 E-value=8.4e-12 Score=138.34 Aligned_cols=212 Identities=22% Similarity=0.311 Sum_probs=142.4
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM 266 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~ 266 (685)
...+.+++|.+.+.+++.+.+..+...+. .|||+|++||||.++||+|.... +.||+.+||..+.+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPSDA----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCCCC----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 34688999999999999999988765543 79999999999999999998866 559999999987654
Q ss_pred Hh-----hhh------h-HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc------
Q 005661 267 FV-----GVG------A-RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ------ 326 (685)
Q Consensus 267 ~~-----g~~------~-~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~--~~~------ 326 (685)
.. |.. + .+-...|+.|. .++||||||..+. ......||..+.. |..
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~mp-----------l~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEMP-----------LELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccCC-----------HHHHHHHHHHHHcCeeEecCCCcc
Confidence 22 210 0 11122344443 3599999999873 2334445554432 211
Q ss_pred -CCCEEEEEecCCc--CcCcccccCCC---CcccccccCCCCHHHHHH----HHHHHhhhhc-----ccCcccHHHHHhc
Q 005661 327 -NEGIIVIAATNFP--ESLDKALVRPG---RFDRHIVVPNPDVEGRRQ----IMESHMSKVL-----KADDVDLMIIARG 391 (685)
Q Consensus 327 -~~~ViVIaaTN~p--~~LD~aLlRpg---RFd~~I~i~~Pd~~eR~~----ILk~~l~~~~-----~~~~vdl~~la~~ 391 (685)
.-+|.||++||.. +.+.....|.. |+. ++.+..|..++|.+ ++++++++.. ....++-+.+...
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHhhhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 2358999999964 11222212211 343 67888899999987 6667766542 2345666777777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 005661 392 TPGFSGADLANLVNIAALKAAMDGAKAVTMADLEY 426 (685)
Q Consensus 392 t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~ 426 (685)
+..-+++.++.|-|-+...+.......|+.+|+..
T Consensus 352 ~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~~ 386 (464)
T COG2204 352 LAYDWPGNVRELENVVERAVILSEGPEIEVEDLPL 386 (464)
T ss_pred HhCCCChHHHHHHHHHHHHHhcCCccccchhhccc
Confidence 77777777776666666666666777788887753
No 146
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.34 E-value=5.8e-12 Score=143.46 Aligned_cols=209 Identities=24% Similarity=0.336 Sum_probs=128.2
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHh-----------cCCCEEEe
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE-----------AGVPFFSC 258 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e-----------~~~~fi~v 258 (685)
..+|++++|.+...+.+.+.+..+... +..|||+|++||||+++|++|... .+.||+.+
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 357999999999999988887754332 337999999999999999999876 46799999
Q ss_pred eccchhhhHh-----hh------hh--HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--
Q 005661 259 SGSEFEEMFV-----GV------GA--RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG-- 323 (685)
Q Consensus 259 s~s~l~~~~~-----g~------~~--~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~-- 323 (685)
+|+.+.+... |. ++ ..-..+|+.|. .++||||||+.|. ...+ ..|+..++.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp--------~~~Q---~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMP--------LPLQ---TRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCC--------HHHH---HHHHhhhhcCe
Confidence 9998754321 11 00 01123444443 3599999999883 2233 344444432
Q ss_pred cc-------cCCCEEEEEecCCcCcCcccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhcc--cCcc
Q 005661 324 FK-------QNEGIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVLK--ADDV 383 (685)
Q Consensus 324 ~~-------~~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~i~~Pd~~eR~~----ILk~~l~~~~~--~~~v 383 (685)
+. ...++.+|++||.. +. .+...|+|.. .+.+..|..++|.+ ++++++++... ...+
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 11 12357899999864 21 1222234432 45778888888875 56666665311 1112
Q ss_pred cH----------HHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005661 384 DL----------MIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 425 (685)
Q Consensus 384 dl----------~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 425 (685)
+- ..|..+..--+-++|+|++++++..+.......|+.+++.
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 21 2233333323557888888887776533333567777764
No 147
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.34 E-value=3.6e-12 Score=141.31 Aligned_cols=212 Identities=25% Similarity=0.354 Sum_probs=133.4
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 264 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~ 264 (685)
....+|+||+|.+++..++.+.++.. .+.+..|||.|.+||||.++|++|.+.. +.||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 34678999999999988888777653 3345589999999999999999998866 6799999999887
Q ss_pred hhHhh-h----------hhHH--HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--c-----
Q 005661 265 EMFVG-V----------GARR--VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--F----- 324 (685)
Q Consensus 265 ~~~~g-~----------~~~~--ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~--~----- 324 (685)
+.... + ++.+ -..+|+.|.. +.||||||..+. ..++ ..||+.|+. |
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgemp--------l~LQ---aKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMP--------LPLQ---AKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCC--------HHHH---HHHHHHHhhceEEecCC
Confidence 65321 1 1111 3345555433 499999999873 2233 344444432 1
Q ss_pred --ccCCCEEEEEecCCcCcCcccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhcc-----cCcccHH
Q 005661 325 --KQNEGIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVLK-----ADDVDLM 386 (685)
Q Consensus 325 --~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~i~~Pd~~eR~~----ILk~~l~~~~~-----~~~vdl~ 386 (685)
...-+|.||+|||+. |-.++ ..|+|-. ++.+..|..++|.+ +..+++.+... ...+..+
T Consensus 375 t~~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 112369999999974 22222 2233322 56777899988877 44455554321 1224434
Q ss_pred HHHhcCCCC---CHHHHHHHHHHHHHHHHHcCCCccCHHHHH-HHH
Q 005661 387 IIARGTPGF---SGADLANLVNIAALKAAMDGAKAVTMADLE-YAK 428 (685)
Q Consensus 387 ~la~~t~G~---sgadI~~lv~~A~~~A~~~~~~~It~edl~-~A~ 428 (685)
.++.....- +-++|+|++.++..++ .....|+.+|+. .++
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp~~~l 495 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLPAFAL 495 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcchhhh
Confidence 333332222 4577778887776643 344457877776 443
No 148
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.32 E-value=5.9e-11 Score=129.91 Aligned_cols=228 Identities=21% Similarity=0.255 Sum_probs=152.8
Q ss_pred CCCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEeecc
Q 005661 187 LESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGS 261 (685)
Q Consensus 187 ~~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs~s 261 (685)
..++.+|++.+.-+.-.....-....-..| +..-..++||||+|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~-------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENP-------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhcc-------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 356788998654333222222111211222 1223369999999999999999999877 3458888888
Q ss_pred chhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc
Q 005661 262 EFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 341 (685)
Q Consensus 262 ~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 341 (685)
.|...++......-.+-|+.-. +-.+++||+|+.+.++... +++.-.++|.+. ..++-+|+.+...|..
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~--qeefFh~FN~l~-------~~~kqIvltsdr~P~~ 221 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT--QEEFFHTFNALL-------ENGKQIVLTSDRPPKE 221 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH--HHHHHHHHHHHH-------hcCCEEEEEcCCCchh
Confidence 8887776654444444555544 4469999999999765321 334444555553 3455666666666765
Q ss_pred C---cccccCCCCccc--ccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005661 342 L---DKALVRPGRFDR--HIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNIAALKAAMDG 415 (685)
Q Consensus 342 L---D~aLlRpgRFd~--~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 415 (685)
+ ++.|.+ ||.. .+.+.+||.+.|..||+.........-+-+ ...++.... -+.++|..+++.....+...+
T Consensus 222 l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~ 298 (408)
T COG0593 222 LNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK 298 (408)
T ss_pred hccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC
Confidence 4 478887 8876 558899999999999999776543332222 344666654 478899999988888887766
Q ss_pred CCccCHHHHHHHHHHHhcccc
Q 005661 416 AKAVTMADLEYAKDKIMMGSE 436 (685)
Q Consensus 416 ~~~It~edl~~A~~~v~~g~~ 436 (685)
+ .||.+.+.+++..+....+
T Consensus 299 ~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 299 R-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred c-cCcHHHHHHHHHHhhcccc
Confidence 4 8999999999988765443
No 149
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.32 E-value=9e-12 Score=136.57 Aligned_cols=200 Identities=23% Similarity=0.284 Sum_probs=130.1
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 264 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~ 264 (685)
.....+.+|+|.+.+..++.+.|+.....+ ..|||.|.+||||..+||+|.... +.||+.+||..+.
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~VA~Sd----------~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEVVAKSD----------STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHHHhcCC----------CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 346788999999999999999998765544 389999999999999999998866 5799999999987
Q ss_pred hhHhh-hhhHHHHHHHHHHHhC--------CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-------
Q 005661 265 EMFVG-VGARRVRDLFSAAKKR--------SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ------- 326 (685)
Q Consensus 265 ~~~~g-~~~~~ir~lF~~A~~~--------~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~--~~~------- 326 (685)
+.... +--...+..|.-|... ..+.||+|||..|.- .. ...||..+.. |..
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL--------~l---QaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL--------AL---QAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH--------HH---HHHHHHHHhhcceeecCCCcee
Confidence 65321 1122334444443221 236999999998732 12 2333433321 111
Q ss_pred CCCEEEEEecCCcCcCcccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhccc-----Cccc---HHH
Q 005661 327 NEGIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVLKA-----DDVD---LMI 387 (685)
Q Consensus 327 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~i~~Pd~~eR~~----ILk~~l~~~~~~-----~~vd---l~~ 387 (685)
.-+|.||+|||+. |...+. .|+|-. ++.+..|..++|.+ +.++++++.... -.++ ++.
T Consensus 356 kVDVRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~ 432 (550)
T COG3604 356 KVDVRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALEL 432 (550)
T ss_pred EEEEEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHH
Confidence 1258999999973 333332 344422 45667788888876 445555544222 1223 233
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHH
Q 005661 388 IARGTPGFSGADLANLVNIAALKA 411 (685)
Q Consensus 388 la~~t~G~sgadI~~lv~~A~~~A 411 (685)
|..+..--+.++|+|++++|+..|
T Consensus 433 L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 433 LSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHh
Confidence 444433336689999999999887
No 150
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.31 E-value=1.5e-11 Score=132.68 Aligned_cols=204 Identities=21% Similarity=0.248 Sum_probs=120.3
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhH-
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF- 267 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~- 267 (685)
.|++++|.+...+.+.+.+..+.. .+..|||+|++||||+++|++|.... +.||+.++|..+.+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 478999999998888887776432 23479999999999999999998655 4799999999875321
Q ss_pred ----hhhhh-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-------CCC
Q 005661 268 ----VGVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-------NEG 329 (685)
Q Consensus 268 ----~g~~~-------~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~-------~~~ 329 (685)
.|... ......|..+ ..++|||||||.+. ...+..+..++..- .+.. ..+
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~--------~~~Q~~L~~~l~~~-~~~~~g~~~~~~~~ 141 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP--------MLVQEKLLRVIEYG-ELERVGGSQPLQVN 141 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCC--------HHHHHHHHHHHhcC-cEEeCCCCceeecc
Confidence 11100 0011233333 34699999999883 22333333333221 1111 125
Q ss_pred EEEEEecCCc-------CcCcccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhcc----c--CcccHHHHHhcC
Q 005661 330 IIVIAATNFP-------ESLDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVLK----A--DDVDLMIIARGT 392 (685)
Q Consensus 330 ViVIaaTN~p-------~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~----ILk~~l~~~~~----~--~~vdl~~la~~t 392 (685)
+.||++|+.. ..+.+.|.. ||. .+.|..|+.++|.+ ++.+++..... . ..++-+.+....
T Consensus 142 ~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~ 218 (326)
T PRK11608 142 VRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL 218 (326)
T ss_pred EEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 8888888753 123344443 553 45677777777765 56666644321 1 235544444443
Q ss_pred CCCC---HHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005661 393 PGFS---GADLANLVNIAALKAAMDGAKAVTMAD 423 (685)
Q Consensus 393 ~G~s---gadI~~lv~~A~~~A~~~~~~~It~ed 423 (685)
..-+ -++|+++++.+...+ ....++.++
T Consensus 219 ~y~WPGNvrEL~~vl~~a~~~~---~~~~~~~~~ 249 (326)
T PRK11608 219 NYRWPGNIRELKNVVERSVYRH---GTSEYPLDN 249 (326)
T ss_pred hCCCCcHHHHHHHHHHHHHHhc---CCCCCchhh
Confidence 3333 456666666655432 333444444
No 151
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.30 E-value=2.6e-11 Score=130.96 Aligned_cols=198 Identities=21% Similarity=0.295 Sum_probs=115.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh----
Q 005661 196 VKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV---- 268 (685)
Q Consensus 196 V~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~---- 268 (685)
|+|.+...+.+.+.+..+.. ....|||+|++||||+++|++|.... +.||+.++|..+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 56888888887777765433 23479999999999999999998755 57999999997754321
Q ss_pred -hhhh-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--cc-------cCCCEE
Q 005661 269 -GVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FK-------QNEGII 331 (685)
Q Consensus 269 -g~~~-------~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~--~~-------~~~~Vi 331 (685)
|... .....+|..+ ..++|||||||.+. ...+ ..|+..++. +. ...++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~--------~~~Q---~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATAS--------LLVQ---EKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCC--------HHHH---HHHHHHHHcCcEEecCCCceeccceE
Confidence 1100 0011223333 34699999999883 2233 333433332 11 124588
Q ss_pred EEEecCCcC-------cCcccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhc----cc--CcccHHHHHhcCCC
Q 005661 332 VIAATNFPE-------SLDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVL----KA--DDVDLMIIARGTPG 394 (685)
Q Consensus 332 VIaaTN~p~-------~LD~aLlRpgRFd~~I~i~~Pd~~eR~~----ILk~~l~~~~----~~--~~vdl~~la~~t~G 394 (685)
+|++||..- .+.+.|.. ||. .+.|..|+.++|.+ ++++++.+.. .. ..++.+.+......
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 999998531 23334443 453 45677777777765 5566665432 11 23554444444333
Q ss_pred C---CHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005661 395 F---SGADLANLVNIAALKAAMDGAKAVTMAD 423 (685)
Q Consensus 395 ~---sgadI~~lv~~A~~~A~~~~~~~It~ed 423 (685)
- +-++|+++++.++..+ ....++.+|
T Consensus 214 ~WPGNvrEL~n~i~~~~~~~---~~~~~~~~~ 242 (329)
T TIGR02974 214 HWPGNVRELKNVVERSVYRH---GLEEAPIDE 242 (329)
T ss_pred CCCchHHHHHHHHHHHHHhC---CCCccchhh
Confidence 3 3455556666555443 234555554
No 152
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.30 E-value=1.8e-11 Score=139.54 Aligned_cols=215 Identities=22% Similarity=0.267 Sum_probs=127.7
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM 266 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~ 266 (685)
..+|++++|.++..+.+.+.+..+... +..|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 467999999999999988887654332 3479999999999999999998754 679999999987543
Q ss_pred Hh-----hhh------h--HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc------ccC
Q 005661 267 FV-----GVG------A--RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF------KQN 327 (685)
Q Consensus 267 ~~-----g~~------~--~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~------~~~ 327 (685)
.. |.. + .....+|+.+. .+.||||||+.|. ...+..+..+|.+-.-. ...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp--------~~~Q~~Ll~~L~~~~~~r~g~~~~~~ 346 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMP--------LPLQTRLLRVLEEREVVRVGGTEPVP 346 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCC--------HHHHHHHHHHHhcCcEEecCCCceee
Confidence 21 110 0 01123444442 3599999999883 22333333333321100 011
Q ss_pred CCEEEEEecCCcC--cCcccccCCC---CcccccccCCCCHHHHHH----HHHHHhhhhcccC--cccHHH---------
Q 005661 328 EGIIVIAATNFPE--SLDKALVRPG---RFDRHIVVPNPDVEGRRQ----IMESHMSKVLKAD--DVDLMI--------- 387 (685)
Q Consensus 328 ~~ViVIaaTN~p~--~LD~aLlRpg---RFd~~I~i~~Pd~~eR~~----ILk~~l~~~~~~~--~vdl~~--------- 387 (685)
.++.+|++||..- .+....+|+. |+. .+.+..|+.++|.+ ++.+++.+..... .++.+.
T Consensus 347 ~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~ 425 (526)
T TIGR02329 347 VDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVAD 425 (526)
T ss_pred ecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHH
Confidence 2468899888642 1222222211 232 45677888888765 5666666542211 233222
Q ss_pred -HHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 005661 388 -IARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEY 426 (685)
Q Consensus 388 -la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~ 426 (685)
|.....--+-++|++++.+++..+.......|+.+|+..
T Consensus 426 ~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 426 PLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 333333234567777777776654322345788887654
No 153
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.29 E-value=3.6e-11 Score=136.10 Aligned_cols=212 Identities=25% Similarity=0.301 Sum_probs=130.5
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-------------------
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA------------------- 251 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~------------------- 251 (685)
..|+||.|++.+++.+.-.+ .....++|.||||||||++++.+++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 47999999999977665332 122479999999999999999998632
Q ss_pred ---------CCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh
Q 005661 252 ---------GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD 322 (685)
Q Consensus 252 ---------~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld 322 (685)
..||...+++......+|.+...-...+..| ..++|||||++.+. ......+.+.|..-.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~--------~~~~~~L~~~LE~~~ 323 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK--------RSVLDALREPIEDGS 323 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC--------HHHHHHHHHHHHcCc
Confidence 2355555544433333343221122233333 23699999999873 223333444332110
Q ss_pred --------ccccCCCEEEEEecCCc------C-----------------cCcccccCCCCcccccccCCCCHHHH-----
Q 005661 323 --------GFKQNEGIIVIAATNFP------E-----------------SLDKALVRPGRFDRHIVVPNPDVEGR----- 366 (685)
Q Consensus 323 --------~~~~~~~ViVIaaTN~p------~-----------------~LD~aLlRpgRFd~~I~i~~Pd~~eR----- 366 (685)
......++.+|+++|.. + .+...|+. |||.++.++.++..+.
T Consensus 324 v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~~~ 401 (499)
T TIGR00368 324 ISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLSTGS 401 (499)
T ss_pred EEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhccCC
Confidence 01113578999999953 1 36666776 9999999987654422
Q ss_pred --------HHHHHHHh------hhh---cccCcccHHH----------------HHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005661 367 --------RQIMESHM------SKV---LKADDVDLMI----------------IARGTPGFSGADLANLVNIAALKAAM 413 (685)
Q Consensus 367 --------~~ILk~~l------~~~---~~~~~vdl~~----------------la~~t~G~sgadI~~lv~~A~~~A~~ 413 (685)
..+.+.+- +.. .....+.... -+....++|.+....+++-|..+|..
T Consensus 402 ~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL 481 (499)
T TIGR00368 402 GESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADL 481 (499)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 22222111 110 0111111111 12223468999999999999999999
Q ss_pred cCCCccCHHHHHHHHH
Q 005661 414 DGAKAVTMADLEYAKD 429 (685)
Q Consensus 414 ~~~~~It~edl~~A~~ 429 (685)
++.+.|+.+|+.+|+.
T Consensus 482 ~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 482 KEEKNISREHLAEAIE 497 (499)
T ss_pred cCCCCCCHHHHHHHHh
Confidence 9999999999999974
No 154
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.29 E-value=1.4e-11 Score=141.56 Aligned_cols=208 Identities=22% Similarity=0.282 Sum_probs=125.5
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 265 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~ 265 (685)
...+|++++|.+...+++.+.+..+.. ....|||+|++||||+++|++|+... +.||+.++|..+.+
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 346899999999999888887776443 23479999999999999999999875 57999999998754
Q ss_pred hHhh-----hhh-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-----
Q 005661 266 MFVG-----VGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ----- 326 (685)
Q Consensus 266 ~~~g-----~~~-------~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~--~~~----- 326 (685)
.... ... ......|..+ ..++|||||||.+. ...+ ..|+..++. +..
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~--------~~~Q---~~Ll~~l~~~~~~~~~~~~ 326 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS--------PAFQ---AKLLRVLQEGEFERVGGNR 326 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC--------HHHH---HHHHHHHhcCcEEECCCCc
Confidence 3211 000 0001112222 35699999999883 2233 344444432 111
Q ss_pred --CCCEEEEEecCCcCcCcccccCCCCccc-------ccccCCCCHHHHH----HHHHHHhhhhcc----cCcccHHH--
Q 005661 327 --NEGIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRR----QIMESHMSKVLK----ADDVDLMI-- 387 (685)
Q Consensus 327 --~~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~i~~Pd~~eR~----~ILk~~l~~~~~----~~~vdl~~-- 387 (685)
..++.+|++|+..- .. +...|+|.. .+.+..|+.++|. .|+++++.+... ...++-+.
T Consensus 327 ~~~~~~riI~~s~~~l--~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~ 403 (534)
T TIGR01817 327 TLKVDVRLVAATNRDL--EE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR 403 (534)
T ss_pred eEeecEEEEEeCCCCH--HH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 12478888887541 11 122334422 3455666666554 466777765321 12344343
Q ss_pred -HHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 005661 388 -IARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEY 426 (685)
Q Consensus 388 -la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~ 426 (685)
|..+..--+-++|+++++.|+..+ ....|+.+|+..
T Consensus 404 ~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 404 VLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 444433334566667777666543 456888888753
No 155
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=7.3e-11 Score=128.40 Aligned_cols=188 Identities=20% Similarity=0.209 Sum_probs=123.2
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC-------CEEEe-e-
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------PFFSC-S- 259 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~-------~fi~v-s- 259 (685)
.+..|++|+|++++++.|...+. ..+.|..+||+||+|+|||++|+.+|+.+.+ |.... .
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 46689999999999999988766 3567888999999999999999999998854 11110 1
Q ss_pred --ccc---h--------h---hhH--------hhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHH
Q 005661 260 --GSE---F--------E---EMF--------VGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMK 311 (685)
Q Consensus 260 --~s~---l--------~---~~~--------~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~ 311 (685)
|.. + . ..+ ...+...+|.+-+... .....|++|||+|.+. .
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~-----------~ 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN-----------R 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------H
Confidence 110 0 0 000 0011233444433332 2345799999999882 3
Q ss_pred HHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhc
Q 005661 312 MTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARG 391 (685)
Q Consensus 312 ~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~ 391 (685)
...|.||..|+. +..++++|..|+.++.+.+.+++ |+ ..+.+++|+.++..++|+....... ..+-....++..
T Consensus 156 ~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~ 229 (351)
T PRK09112 156 NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQR 229 (351)
T ss_pred HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHH
Confidence 446778888875 34456666667888888888887 87 5899999999999999987432211 011113445555
Q ss_pred CCCCCHHHHHHHHH
Q 005661 392 TPGFSGADLANLVN 405 (685)
Q Consensus 392 t~G~sgadI~~lv~ 405 (685)
+.| +++...++++
T Consensus 230 s~G-~pr~Al~ll~ 242 (351)
T PRK09112 230 SKG-SVRKALLLLN 242 (351)
T ss_pred cCC-CHHHHHHHHh
Confidence 554 4555445544
No 156
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.28 E-value=6.1e-11 Score=142.26 Aligned_cols=164 Identities=24% Similarity=0.324 Sum_probs=111.9
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCe-EEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh---
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKG-VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM--- 266 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkg-vLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~--- 266 (685)
+.|+|++++.+.+.+.+...+..- .....|.| +||+||||+|||.+|+++|..+ +..|+.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl----~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGL----EDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 568999999888877775421100 01134665 7999999999999999999988 458899999887543
Q ss_pred ---------HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCC
Q 005661 267 ---------FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNE 328 (685)
Q Consensus 267 ---------~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~---------~~~ 328 (685)
|+|.... ..+....+.+..+||+|||||..- ..+.+-|+..+|.-. ...
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~-----------~~v~~~Llq~ld~g~l~d~~Gr~vd~~ 708 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH-----------PDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC-----------HHHHHHHHHHhhcceeecCCCcEEecc
Confidence 2222111 123445566777999999999652 233444555554321 124
Q ss_pred CEEEEEecCCcC-----------------------------cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhh
Q 005661 329 GIIVIAATNFPE-----------------------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV 377 (685)
Q Consensus 329 ~ViVIaaTN~p~-----------------------------~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~ 377 (685)
+.+||+|||... .+.|+|+. |++ +|.|.+.+.++..+|+...+...
T Consensus 709 n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 709 NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 689999999521 13355555 887 88999999999999999888653
No 157
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.5e-10 Score=134.78 Aligned_cols=203 Identities=24% Similarity=0.342 Sum_probs=146.5
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEee
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 259 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs 259 (685)
.-+++-|+|.++.++.+.+++.. +...+-+|+|+||+|||.++.-+|... +..++..+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 45688999999887777666542 223368899999999999999999876 45677777
Q ss_pred ccchhh--hHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCch-HHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 260 GSEFEE--MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ-QYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 260 ~s~l~~--~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~-~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
...+.. +|.|+.+.+++.+.+......+.|||||||+.+.+.....+. ......+...| ..+.+.+|++|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-------ARGeL~~IGAT 306 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-------ARGELRCIGAT 306 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-------hcCCeEEEEec
Confidence 777764 499999999999999999888999999999999877654331 22333333333 34678899999
Q ss_pred CCcC-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-----HHHHHhc-----CCCCCHHHHH
Q 005661 337 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-----LMIIARG-----TPGFSGADLA 401 (685)
Q Consensus 337 N~p~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-----l~~la~~-----t~G~sgadI~ 401 (685)
...+ .-|+||-| ||. .|.+..|+.++-..||+-.-.++.....|. +...+.+ +.-+-|.--.
T Consensus 307 T~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred cHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 7543 35899999 996 889999999999999998877665444432 2222222 2233344444
Q ss_pred HHHHHHHHHHHHc
Q 005661 402 NLVNIAALKAAMD 414 (685)
Q Consensus 402 ~lv~~A~~~A~~~ 414 (685)
.|+.+|+......
T Consensus 384 DLiDeA~a~~~l~ 396 (786)
T COG0542 384 DLLDEAGARVRLE 396 (786)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777666544
No 158
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1e-10 Score=127.83 Aligned_cols=186 Identities=18% Similarity=0.165 Sum_probs=123.6
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCE-------E----
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF-------F---- 256 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~f-------i---- 256 (685)
..+.+|++|+|++.+++.|.+.+. ..+.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 356789999999999999997766 356788999999999999999999999773210 0
Q ss_pred ----Eeeccc-----------hh-------hhH----hhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCc
Q 005661 257 ----SCSGSE-----------FE-------EMF----VGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKD 306 (685)
Q Consensus 257 ----~vs~s~-----------l~-------~~~----~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~ 306 (685)
.-.|.. +. ++- .......+|++-+.+. ...|-|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 000100 00 000 0011234555555442 3467899999999882
Q ss_pred hHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHH
Q 005661 307 QQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLM 386 (685)
Q Consensus 307 ~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~ 386 (685)
....|.||..++. ...++++|.+|+.++.+.+.+++ |+. .+.|++|+.++..++|....... .+..+.
T Consensus 155 ----~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~~---~~~~~~ 222 (365)
T PRK07471 155 ----ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPDL---PDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhcccC---CHHHHH
Confidence 3456788888773 44567888899999988888876 774 88999999999999888764221 111123
Q ss_pred HHHhcCCCCCHHHHHHHH
Q 005661 387 IIARGTPGFSGADLANLV 404 (685)
Q Consensus 387 ~la~~t~G~sgadI~~lv 404 (685)
.++..+.| ++....+++
T Consensus 223 ~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 223 ALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHcCC-CHHHHHHHh
Confidence 45555554 444433333
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.26 E-value=1.2e-10 Score=140.04 Aligned_cols=168 Identities=24% Similarity=0.322 Sum_probs=112.1
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCC-eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhH-
Q 005661 193 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK-GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF- 267 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pk-gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~- 267 (685)
++.|+|++.+++.+.+.+...+..-. ....|. .+||+||||||||++|++||..+ +.+|+.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc----CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 56799999999999888765321000 011233 58999999999999999999877 5689999998875431
Q ss_pred ----hhhh-----hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--c-------cCCC
Q 005661 268 ----VGVG-----ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--K-------QNEG 329 (685)
Q Consensus 268 ----~g~~-----~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~--~-------~~~~ 329 (685)
.|.. ...-..+....+....+||||||++.+- . ...+.|+..++.- . ...+
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~--------~---~v~~~Ll~ile~g~l~d~~gr~vd~rn 711 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH--------P---DVFNILLQVLDDGRLTDGQGRTVDFRN 711 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC--------H---HHHHHHHHHHhhCceecCCceEEeecc
Confidence 1110 0111112233344445899999999762 2 2344444444321 1 1235
Q ss_pred EEEEEecCCcC-------------------------cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhh
Q 005661 330 IIVIAATNFPE-------------------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV 377 (685)
Q Consensus 330 ViVIaaTN~p~-------------------------~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~ 377 (685)
.+||+|||... .+.|+|+. |+|.++.|.+++.+...+|++.++.+.
T Consensus 712 ~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 712 TVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred cEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 68999999731 13356676 999999999999999999999988763
No 160
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.25 E-value=8.7e-12 Score=124.82 Aligned_cols=119 Identities=35% Similarity=0.506 Sum_probs=69.0
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC-------------------
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG------------------- 252 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~------------------- 252 (685)
.|+||+|++.+|+.|.-... |. .++||+||||||||++|+.+..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G~---h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------GG---HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------CC-----EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------CC---CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999999985443 32 4899999999999999999987551
Q ss_pred ---------CCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc
Q 005661 253 ---------VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG 323 (685)
Q Consensus 253 ---------~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~ 323 (685)
.||....-+.-....+|.+....-..+..| ...||||||+..+ ...++..|..-|+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislA---h~GVLflDE~~ef-----------~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLA---HRGVLFLDELNEF-----------DRSVLDALRQPLED 132 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGG---TTSEEEECETTTS------------HHHHHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHh---cCCEEEechhhhc-----------CHHHHHHHHHHHHC
Confidence 233333332222222332221111122222 2359999999866 45566666666643
Q ss_pred c-----------ccCCCEEEEEecCC
Q 005661 324 F-----------KQNEGIIVIAATNF 338 (685)
Q Consensus 324 ~-----------~~~~~ViVIaaTN~ 338 (685)
- .-..++++|+|+|.
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred CeEEEEECCceEEEecccEEEEEecc
Confidence 1 22356899999993
No 161
>PHA02244 ATPase-like protein
Probab=99.25 E-value=1.5e-10 Score=124.93 Aligned_cols=131 Identities=26% Similarity=0.285 Sum_probs=83.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhh---hhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVG---VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP 304 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g---~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~ 304 (685)
..|||+||||||||++|+++|..++.||+.++...-.....| ........-|-.+. ..+++|||||++.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~----- 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASI----- 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCC-----
Confidence 379999999999999999999999999999984311000111 00011111122222 345799999999773
Q ss_pred CchHHHHHHHHHHHHH-----hh-ccccCCCEEEEEecCCc-----------CcCcccccCCCCcccccccCCCCHHHHH
Q 005661 305 KDQQYMKMTLNQLLVE-----LD-GFKQNEGIIVIAATNFP-----------ESLDKALVRPGRFDRHIVVPNPDVEGRR 367 (685)
Q Consensus 305 ~~~~~~~~~l~~LL~~-----ld-~~~~~~~ViVIaaTN~p-----------~~LD~aLlRpgRFd~~I~i~~Pd~~eR~ 367 (685)
......++.++.. .+ .+....++.+|+|+|.+ ..|+++++. ||- .|+++.|+. ...
T Consensus 194 ---p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~-~E~ 266 (383)
T PHA02244 194 ---PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK-IEH 266 (383)
T ss_pred ---HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH-HHH
Confidence 2233344444421 11 12234678999999973 467899998 995 789999983 333
Q ss_pred HHHH
Q 005661 368 QIME 371 (685)
Q Consensus 368 ~ILk 371 (685)
.|..
T Consensus 267 ~i~~ 270 (383)
T PHA02244 267 LISN 270 (383)
T ss_pred HHhh
Confidence 4443
No 162
>PRK09087 hypothetical protein; Validated
Probab=99.25 E-value=1.1e-10 Score=119.72 Aligned_cols=171 Identities=20% Similarity=0.168 Sum_probs=110.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchH
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQ 308 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~ 308 (685)
.++|+||+|+|||+|+++++...++. +++...+...+. ..... .+|+|||+|.+. ....
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~-----~~~~ 104 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGG-----FDET 104 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHH-----------Hhhhc---CeEEEECCCCCC-----CCHH
Confidence 49999999999999999999887655 344333332221 11111 389999999762 1222
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEecCCcCc---CcccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhcccCc-
Q 005661 309 YMKMTLNQLLVELDGFKQNEGIIVIAATNFPES---LDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKADD- 382 (685)
Q Consensus 309 ~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~---LD~aLlRpgRFd--~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~- 382 (685)
..-.++|.+ ...+..+||+++..|.. ..+.|++ ||. ..+++.+|+.+.|.+|++.++......-+
T Consensus 105 ~lf~l~n~~-------~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 105 GLFHLINSV-------RQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred HHHHHHHHH-------HhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 222233332 33455666666655543 3577877 775 57899999999999999999977533222
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 383 VDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 383 vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
--+..|++...+ +.+.+..+++.....+...+ +.||...+++++..+
T Consensus 176 ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 176 HVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 224557777663 55666666666555554444 668999998888754
No 163
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.24 E-value=5.1e-11 Score=136.29 Aligned_cols=208 Identities=21% Similarity=0.256 Sum_probs=123.4
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 265 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~ 265 (685)
...+|++++|.+...+.+.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 456899999999988777766654322 23369999999999999999997654 46999999998764
Q ss_pred hHh-----hhhh-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-------
Q 005661 266 MFV-----GVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ------- 326 (685)
Q Consensus 266 ~~~-----g~~~-------~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~------- 326 (685)
... |... .....+|+.+ ..++|||||||.+. ...+..+..++..- .|..
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~--------~~~Q~~Ll~~l~~~-~~~~~g~~~~~ 336 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMS--------PRMQAKLLRFLNDG-TFRRVGEDHEV 336 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCC--------HHHHHHHHHHHhcC-CcccCCCCcce
Confidence 321 1100 0112334443 24699999999883 22333333343321 1211
Q ss_pred CCCEEEEEecCCcC--c-----CcccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhcc-----cCcccHHHHHh
Q 005661 327 NEGIIVIAATNFPE--S-----LDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVLK-----ADDVDLMIIAR 390 (685)
Q Consensus 327 ~~~ViVIaaTN~p~--~-----LD~aLlRpgRFd~~I~i~~Pd~~eR~~----ILk~~l~~~~~-----~~~vdl~~la~ 390 (685)
..++.||++|+.+- . +.+.|.. |+. .+.+..|+.++|.+ ++.+++.+... ...++.+.+..
T Consensus 337 ~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~ 413 (520)
T PRK10820 337 HVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 413 (520)
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 23578888887641 1 2233332 443 35677788777764 44555543311 12455555555
Q ss_pred cCCCCCHH---HHHHHHHHHHHHHHHcCCCccCHHHH
Q 005661 391 GTPGFSGA---DLANLVNIAALKAAMDGAKAVTMADL 424 (685)
Q Consensus 391 ~t~G~sga---dI~~lv~~A~~~A~~~~~~~It~edl 424 (685)
....-+++ +|++++.+|... .....|+.+|+
T Consensus 414 L~~y~WPGNvreL~nvl~~a~~~---~~~~~i~~~~~ 447 (520)
T PRK10820 414 LTRYGWPGNVRQLKNAIYRALTQ---LEGYELRPQDI 447 (520)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHh---CCCCcccHHHc
Confidence 44443444 555555555443 34567888876
No 164
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.23 E-value=1.5e-10 Score=134.30 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=67.0
Q ss_pred CEEEEEecCCc--CcCcccccCCCCcc---cccccCC--C-CHHHHHHHHHHHhhh---hcccCcccHHHHHhcC-----
Q 005661 329 GIIVIAATNFP--ESLDKALVRPGRFD---RHIVVPN--P-DVEGRRQIMESHMSK---VLKADDVDLMIIARGT----- 392 (685)
Q Consensus 329 ~ViVIaaTN~p--~~LD~aLlRpgRFd---~~I~i~~--P-d~~eR~~ILk~~l~~---~~~~~~vdl~~la~~t----- 392 (685)
++.||+++|.. ..+|+.|+. ||+ ..+.|+. | +.+.|.++++...+. ....+.++-+.+.+..
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 68899999965 468999988 998 5555532 3 455565555543332 2112234432221111
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 393 -------PGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 393 -------~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
-..+.++|.+++++|...|..+++..|+.+|+.+|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 124579999999999888888888999999999997754
No 165
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.23 E-value=1.9e-10 Score=128.14 Aligned_cols=213 Identities=18% Similarity=0.183 Sum_probs=128.5
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC--CEEEeeccc-hhhhHhhh
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSE-FEEMFVGV 270 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs~s~-l~~~~~g~ 270 (685)
+.|+|.+++++.+...+. ...+|||+||||||||++|++++..++. +|....+.- ......|.
T Consensus 20 ~~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 357888888776654432 1237999999999999999999997643 565554431 12223332
Q ss_pred h-hHHH--HHHHHHHHhC---CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh-cc-c------cCCCEEEEEec
Q 005661 271 G-ARRV--RDLFSAAKKR---SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD-GF-K------QNEGIIVIAAT 336 (685)
Q Consensus 271 ~-~~~i--r~lF~~A~~~---~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld-~~-~------~~~~ViVIaaT 336 (685)
. .... ..-|...... ...+||+|||..+. ..+.+.||..|. +. . .-+..++++||
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 1 1111 1223221111 22499999998652 345566666662 21 1 11224555666
Q ss_pred CCcCc---CcccccCCCCcccccccCCCC-HHHHHHHHHHHhhh----hcccCccc-----------------------H
Q 005661 337 NFPES---LDKALVRPGRFDRHIVVPNPD-VEGRRQIMESHMSK----VLKADDVD-----------------------L 385 (685)
Q Consensus 337 N~p~~---LD~aLlRpgRFd~~I~i~~Pd-~~eR~~ILk~~l~~----~~~~~~vd-----------------------l 385 (685)
|.... ..+++.. ||-..+.+|+|+ .++..+||...... ......++ +
T Consensus 155 N~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI 232 (498)
T PRK13531 155 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELI 232 (498)
T ss_pred CCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHH
Confidence 74321 2347776 997788999997 46667888754221 00000011 1
Q ss_pred HHHHh---cC---CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcc
Q 005661 386 MIIAR---GT---PGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMG 434 (685)
Q Consensus 386 ~~la~---~t---~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g 434 (685)
..|.. .+ ...|++--..+++-|...|...|+..|+.+|+. .+..++..
T Consensus 233 ~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 233 FQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 12232 12 347889889999999999999999999999999 66666654
No 166
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.23 E-value=9.5e-11 Score=137.41 Aligned_cols=209 Identities=19% Similarity=0.271 Sum_probs=125.3
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM 266 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~ 266 (685)
..+|++++|.+...+++.+.+..+.. .+..|||+|++||||+++|++|.... +.||+.++|..+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 34699999999998888777665332 23369999999999999999998865 479999999987542
Q ss_pred -----Hhhhh--h--HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-------CC
Q 005661 267 -----FVGVG--A--RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ-------NE 328 (685)
Q Consensus 267 -----~~g~~--~--~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~--~~~-------~~ 328 (685)
+.|.. . ......|+. ...++||||||+.+. ...+ ..|+..++. +.. .-
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~--------~~~Q---~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLS--------PELQ---SALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCC--------HHHH---HHHHHHHhcCcEEeCCCCceEEe
Confidence 11110 0 000012222 235699999999883 2233 333433332 111 12
Q ss_pred CEEEEEecCCcCcCcccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhc----ccCcccHHH---HHh
Q 005661 329 GIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVL----KADDVDLMI---IAR 390 (685)
Q Consensus 329 ~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~i~~Pd~~eR~~----ILk~~l~~~~----~~~~vdl~~---la~ 390 (685)
++.||++||..- ..+...|+|.. .+.+..|..++|.+ ++++++.+.. ....++-+. |..
T Consensus 457 ~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 457 DVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 578999988642 12222234422 45677788888754 5666665432 112344343 444
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 391 GTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 391 ~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
...--+.++|+++++.+...+ ....|+.+|+...+
T Consensus 534 y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 443334566677777665543 44578888876544
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=1.3e-10 Score=140.00 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=125.7
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh----
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM---- 266 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~---- 266 (685)
..|+|++++.+.+.+.+...+..-. -..++...+||+||||||||++|++||..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 5699999999999887765321000 011223358999999999999999999977 568999999887542
Q ss_pred -Hhhhhh-----HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--c-------cCCCEE
Q 005661 267 -FVGVGA-----RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--K-------QNEGII 331 (685)
Q Consensus 267 -~~g~~~-----~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~--~-------~~~~Vi 331 (685)
+.|... .....+....+....+|||||||+.+- ..+.+.|+..|+.- . .-.+.+
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~-----------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH-----------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC-----------HHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 111110 011233444455556899999999762 23345555555321 1 124688
Q ss_pred EEEecCCcCc-------------------------CcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-------
Q 005661 332 VIAATNFPES-------------------------LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK------- 379 (685)
Q Consensus 332 VIaaTN~p~~-------------------------LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~------- 379 (685)
||+|||.... +.|.|+. |+|.++.|.+++.+...+|+...+.....
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~ 788 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKI 788 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999997321 2245554 99999999999999999999988764211
Q ss_pred cCccc---HHHHHhcC--CCCCHHHHHHHHHHHH
Q 005661 380 ADDVD---LMIIARGT--PGFSGADLANLVNIAA 408 (685)
Q Consensus 380 ~~~vd---l~~la~~t--~G~sgadI~~lv~~A~ 408 (685)
...++ ...|+... +.+..+.|+++++...
T Consensus 789 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 789 TLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred eecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 11222 22344432 2345567776666544
No 168
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.23 E-value=1.2e-10 Score=132.92 Aligned_cols=220 Identities=17% Similarity=0.208 Sum_probs=131.0
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhh--hCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe----eccchhhhH
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTR--LGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC----SGSEFEEMF 267 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~--~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v----s~s~l~~~~ 267 (685)
-+|.|.+.+|..+.-.+ +........ .......+|||+|+||||||++|+++++......+.. ++..+....
T Consensus 203 p~i~G~~~~k~~l~l~l--~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~ 280 (509)
T smart00350 203 PSIYGHEDIKKAILLLL--FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAV 280 (509)
T ss_pred ccccCcHHHHHHHHHHH--hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccc
Confidence 35778887766654222 111100000 1112233699999999999999999999875432222 222221110
Q ss_pred hh---hhhHHH-HHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEEE
Q 005661 268 VG---VGARRV-RDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGIIV 332 (685)
Q Consensus 268 ~g---~~~~~i-r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~ViV 332 (685)
.. .+...+ ...+. ....++++|||+|.+. ...+ ..|+..|+.- .-+.++.|
T Consensus 281 ~~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~--------~~~q---~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 281 TRDPETREFTLEGGALV---LADNGVCCIDEFDKMD--------DSDR---TAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred eEccCcceEEecCccEE---ecCCCEEEEechhhCC--------HHHH---HHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 00 000000 00111 1234699999999883 1223 3333334321 12356899
Q ss_pred EEecCCcC-------------cCcccccCCCCcccccc-cCCCCHHHHHHHHHHHhhhhc--------------------
Q 005661 333 IAATNFPE-------------SLDKALVRPGRFDRHIV-VPNPDVEGRRQIMESHMSKVL-------------------- 378 (685)
Q Consensus 333 IaaTN~p~-------------~LD~aLlRpgRFd~~I~-i~~Pd~~eR~~ILk~~l~~~~-------------------- 378 (685)
|+|+|..+ .|++++++ |||..+. .+.|+.+...+|+++.+....
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 424 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLR 424 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHH
Confidence 99999653 58899998 9998654 488999999999888553211
Q ss_pred ---------ccCcccH---HHH------Hhc---------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 379 ---------KADDVDL---MII------ARG---------TPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 379 ---------~~~~vdl---~~l------a~~---------t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
..+.++- ..+ .+. ..+.|.+.+..+++-|..+|..+.++.|+.+|+..|++-+
T Consensus 425 ~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 425 KYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 0011110 001 011 2356889999999999999999999999999999998754
No 169
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.23 E-value=7.3e-11 Score=134.75 Aligned_cols=194 Identities=22% Similarity=0.247 Sum_probs=120.7
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~ 268 (685)
++.+++|.+...+.+.+.+..+.. .+..|||+|++||||+++|++|.... +.||+.++|..+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 688999999999998888876433 24489999999999999999998865 57999999998754321
Q ss_pred -----hhhh-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--cc-------cC
Q 005661 269 -----GVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FK-------QN 327 (685)
Q Consensus 269 -----g~~~-------~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~--~~-------~~ 327 (685)
|... ......|..+ ..++|||||||.+. ...+ ..|+..++. +. ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~--------~~~Q---~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP--------LALQ---AKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC--------HHHH---HHHHHHHhcCCEeeCCCCccee
Confidence 1100 0011234333 34699999999884 2233 344444432 11 12
Q ss_pred CCEEEEEecCCcC-------cCcccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhcc-----cCcccHHH---H
Q 005661 328 EGIIVIAATNFPE-------SLDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVLK-----ADDVDLMI---I 388 (685)
Q Consensus 328 ~~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~i~~Pd~~eR~~----ILk~~l~~~~~-----~~~vdl~~---l 388 (685)
.++.||++||..- .+.+.|.. |+. .+.|..|+.++|.+ ++++++.+... ...++.+. |
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 3688999998642 12222222 332 45677888888765 55666654321 12344433 4
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHH
Q 005661 389 ARGTPGFSGADLANLVNIAALKAA 412 (685)
Q Consensus 389 a~~t~G~sgadI~~lv~~A~~~A~ 412 (685)
..+..--+-++|+++++.|+..+.
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhcC
Confidence 444333356788888888877663
No 170
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=1.7e-10 Score=123.87 Aligned_cols=153 Identities=15% Similarity=0.281 Sum_probs=110.6
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC--------EEEeeccch
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP--------FFSCSGSEF 263 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~--------fi~vs~s~l 263 (685)
+|+||+|++.+++.|...+. ..+.|..+||+||+|+|||++|+++|+.+-+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 69999999999999887764 35677789999999999999999999976331 2222211
Q ss_pred hhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 264 EEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 264 ~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
... ..+...+|++.+.+. .....|++||++|.+. ....|.||..++. +++++++|.+|+.+
T Consensus 69 ~~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEe--pp~~t~~il~~~~~ 133 (313)
T PRK05564 69 NKK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEE--PPKGVFIILLCENL 133 (313)
T ss_pred cCC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcC--CCCCeEEEEEeCCh
Confidence 000 112234666655442 2344699999999872 3456788888884 55677777777888
Q ss_pred CcCcccccCCCCcccccccCCCCHHHHHHHHHHHhh
Q 005661 340 ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMS 375 (685)
Q Consensus 340 ~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~ 375 (685)
+.+-+.+++ |. .++.+++|+.++....++....
T Consensus 134 ~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~ 166 (313)
T PRK05564 134 EQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN 166 (313)
T ss_pred HhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc
Confidence 999999987 76 4889999999988887766543
No 171
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.21 E-value=2.9e-10 Score=136.63 Aligned_cols=167 Identities=23% Similarity=0.311 Sum_probs=113.8
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCe-EEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh---
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKG-VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM--- 266 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkg-vLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~--- 266 (685)
+.|+|++++++.+...+...+..- .....|.+ +||+||||+|||++|++||+.+ +.+++.++++++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl----~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL----KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc----cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 568999999999887775321100 01123444 7999999999999999999987 468999998887432
Q ss_pred --Hhhhh-----hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCCE
Q 005661 267 --FVGVG-----ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEGI 330 (685)
Q Consensus 267 --~~g~~-----~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~---------~~~~V 330 (685)
+.|.. ......+....+.+..+||+|||+|.+- ..+.+.|+..|+.-. ...+.
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~-----------~~v~~~Llq~le~g~~~d~~g~~v~~~~~ 653 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH-----------PDIFNLLLQILDDGRLTDSKGRTIDFKNT 653 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC-----------HHHHHHHHHHhccCceecCCCcEEecCce
Confidence 22211 1112345555666666999999999772 334556666565311 13578
Q ss_pred EEEEecCCcCc-------------------------------------CcccccCCCCcccccccCCCCHHHHHHHHHHH
Q 005661 331 IVIAATNFPES-------------------------------------LDKALVRPGRFDRHIVVPNPDVEGRRQIMESH 373 (685)
Q Consensus 331 iVIaaTN~p~~-------------------------------------LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~ 373 (685)
++|+|||.... +.|.|+. |+|.+|.|.+.+.++..+|++..
T Consensus 654 i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~ 731 (821)
T CHL00095 654 LIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIM 731 (821)
T ss_pred EEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHH
Confidence 99999995321 1134454 89999999999999999999888
Q ss_pred hhhh
Q 005661 374 MSKV 377 (685)
Q Consensus 374 l~~~ 377 (685)
+.+.
T Consensus 732 l~~l 735 (821)
T CHL00095 732 LKNL 735 (821)
T ss_pred HHHH
Confidence 8753
No 172
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.21 E-value=1.3e-10 Score=125.61 Aligned_cols=133 Identities=35% Similarity=0.424 Sum_probs=87.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh--HhhhhhHHHHHH-HHHHH-hCCC------eEEEEcCchhh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--FVGVGARRVRDL-FSAAK-KRSP------CIIFIDEIDAI 298 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~--~~g~~~~~ir~l-F~~A~-~~~P------~ILfIDEID~l 298 (685)
.+||.||||||||++|+.+|..++.+|+.+.|...... ..|...-..... ...-+ ...| +|+|+|||+..
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra 124 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA 124 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccC
Confidence 69999999999999999999999999999999865443 222211111100 00000 0011 49999999966
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhhc----------cccCCCEEEEEecC-----CcCcCcccccCCCCcccccccCCCC-
Q 005661 299 GGSRNPKDQQYMKMTLNQLLVELDG----------FKQNEGIIVIAATN-----FPESLDKALVRPGRFDRHIVVPNPD- 362 (685)
Q Consensus 299 ~~~r~~~~~~~~~~~l~~LL~~ld~----------~~~~~~ViVIaaTN-----~p~~LD~aLlRpgRFd~~I~i~~Pd- 362 (685)
. ..+.+.|+..|+. +.-..+++||+|+| ....|++++++ ||...+.++.|+
T Consensus 125 ~-----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~ 191 (329)
T COG0714 125 P-----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS 191 (329)
T ss_pred C-----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCc
Confidence 2 2334444444443 34457789999999 44568899998 998889999994
Q ss_pred HHHHHHHHHHHh
Q 005661 363 VEGRRQIMESHM 374 (685)
Q Consensus 363 ~~eR~~ILk~~l 374 (685)
..+...++....
T Consensus 192 ~~e~~~i~~~~~ 203 (329)
T COG0714 192 EEEERIILARVG 203 (329)
T ss_pred hHHHHHHHHhCc
Confidence 444444444443
No 173
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.20 E-value=4.2e-10 Score=127.69 Aligned_cols=212 Identities=21% Similarity=0.223 Sum_probs=132.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhh----hh-------------------CCCCCCeEEEEcCCCCChHHHH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFT----RL-------------------GGKLPKGVLLVGPPGTGKTMLA 244 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~----~~-------------------g~~~pkgvLL~GPPGTGKT~LA 244 (685)
+.+..|.|+.|-+.+-+.+..++..+ ++-.|. ++ +....|-+||+||||-||||||
T Consensus 265 y~Pk~FtdLLsDe~tNR~~L~WLK~W-D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 265 YRPKKFTDLLSDEKTNRRMLGWLKQW-DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred cChhHHHHHhcchhHHHHHHHHHHhh-cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 45677999999999888777666542 222222 11 1112245899999999999999
Q ss_pred HHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHH-H---HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 245 RAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSA-A---KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 245 ralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~-A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
+.+|+.+|+.++.+|.|+-... .....++..+... - ....|.+|+|||||.- ......++..++..
T Consensus 344 HViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa--------~~~~Vdvilslv~a 413 (877)
T KOG1969|consen 344 HVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA--------PRAAVDVILSLVKA 413 (877)
T ss_pred HHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC--------cHHHHHHHHHHHHh
Confidence 9999999999999999985432 1111222222211 1 1257999999999932 12233344444431
Q ss_pred ----hhcccc---------C---CCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc
Q 005661 321 ----LDGFKQ---------N---EGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD 384 (685)
Q Consensus 321 ----ld~~~~---------~---~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd 384 (685)
..|-.. . -...||+.+|... -|+|+----|..+|.|++|...-..+-|+..+.+.... +|
T Consensus 414 ~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr--~d 489 (877)
T KOG1969|consen 414 TNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR--AD 489 (877)
T ss_pred hcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC--CC
Confidence 111110 0 0146788888543 46664222477789999999988888888777655443 33
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005661 385 LMIIARGTPGFSGADLANLVNIAALKAAMDG 415 (685)
Q Consensus 385 l~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 415 (685)
...|..+++ ++..||++.+|.-...+.+..
T Consensus 490 ~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 490 SKALNALCE-LTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred HHHHHHHHH-HhcchHHHHHHHHHHHHHhcc
Confidence 334443333 344599999999988887644
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.20 E-value=5e-11 Score=108.77 Aligned_cols=126 Identities=37% Similarity=0.472 Sum_probs=83.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCC---EEEeeccchhhh--------------HhhhhhHHHHHHHHHHHhCCCeE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVP---FFSCSGSEFEEM--------------FVGVGARRVRDLFSAAKKRSPCI 289 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~---fi~vs~s~l~~~--------------~~g~~~~~ir~lF~~A~~~~P~I 289 (685)
+..++|+||||||||++++.++..+..+ ++.++++..... .........+.++..++...|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999775 888888765432 11234556778888888877899
Q ss_pred EEEcCchhhcCCCCCCchHHHHHHHHHH--HHHhhccccCCCEEEEEecCC-cCcCcccccCCCCcccccccCCC
Q 005661 290 IFIDEIDAIGGSRNPKDQQYMKMTLNQL--LVELDGFKQNEGIIVIAATNF-PESLDKALVRPGRFDRHIVVPNP 361 (685)
Q Consensus 290 LfIDEID~l~~~r~~~~~~~~~~~l~~L--L~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRFd~~I~i~~P 361 (685)
|||||++.+...... ...... ...........+..+|+++|. ....+..+.+ |++.++.++.+
T Consensus 82 iiiDei~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE-------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH-------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999988543210 000000 001111233456788888886 2333344443 88888777654
No 175
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.6e-11 Score=123.84 Aligned_cols=125 Identities=33% Similarity=0.488 Sum_probs=85.6
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhhhhhC-------CCCCC-eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 195 DVKGVDEAKQELEEIVHYLRDPKRFTRLG-------GKLPK-GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~l~~~~~~~~~g-------~~~pk-gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
-|+|++.+|+.|.=.|- ..|+++. ..+.| +|||.||.|||||+||+.+|+.+++||-..++..+.+.
T Consensus 62 YVIGQe~AKKvLsVAVY-----NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 62 YVIGQEQAKKVLSVAVY-----NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred heecchhhhceeeeeeh-----hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 47888888877652221 1233332 22322 69999999999999999999999999999999999876
Q ss_pred -HhhhhhHH-HHHHHHHHH----hCCCeEEEEcCchhhcCCCCC-Cc--hHHHHHHHHHHHHHhhcc
Q 005661 267 -FVGVGARR-VRDLFSAAK----KRSPCIIFIDEIDAIGGSRNP-KD--QQYMKMTLNQLLVELDGF 324 (685)
Q Consensus 267 -~~g~~~~~-ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~-~~--~~~~~~~l~~LL~~ld~~ 324 (685)
|+|+...+ +..+++.|. ....+||||||||.+..+... .. +-.-+.+...||..++|-
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 99986554 445555442 234579999999999875532 11 011234556677777763
No 176
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.18 E-value=1.7e-09 Score=112.77 Aligned_cols=189 Identities=17% Similarity=0.221 Sum_probs=115.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCC-CEEE---eec----cchhhh---Hhhhh------h---HHHHHHH-HHHHhCCC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGV-PFFS---CSG----SEFEEM---FVGVG------A---RRVRDLF-SAAKKRSP 287 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~-~fi~---vs~----s~l~~~---~~g~~------~---~~ir~lF-~~A~~~~P 287 (685)
.++|+||+|+|||++++.+++.+.. .++. +++ .++... ..|.. . ..+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 2221 111 111111 11111 0 1122212 22345677
Q ss_pred eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC---cCc----ccccCCCCcccccccCC
Q 005661 288 CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE---SLD----KALVRPGRFDRHIVVPN 360 (685)
Q Consensus 288 ~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~---~LD----~aLlRpgRFd~~I~i~~ 360 (685)
.+|+|||++.+. ......+..+..... .....+.|+.+ ..++ .+. ..+.+ |+...+++++
T Consensus 125 ~vliiDe~~~l~--------~~~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~l~~ 191 (269)
T TIGR03015 125 ALLVVDEAQNLT--------PELLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCHLGP 191 (269)
T ss_pred eEEEEECcccCC--------HHHHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeeeCCC
Confidence 899999999873 112222222221111 11122333333 3332 221 12333 7777889999
Q ss_pred CCHHHHHHHHHHHhhhhccc-----CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 361 PDVEGRRQIMESHMSKVLKA-----DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 361 Pd~~eR~~ILk~~l~~~~~~-----~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
.+.++..+++...+...... .+-.+..|.+.+.|. ++.|..+|+.+...|..++.+.|+.++++.++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 99999999999988754321 122356678888886 56699999999999999999999999999998765
No 177
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.17 E-value=5.1e-11 Score=130.08 Aligned_cols=196 Identities=25% Similarity=0.304 Sum_probs=119.5
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHh----cCCCEEEeeccchh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE----AGVPFFSCSGSEFE 264 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e----~~~~fi~vs~s~l~ 264 (685)
....|.+++|.+...+++++-+..+- .....||++|++||||+++|+.|... .+.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 45678999999999888887776522 22337999999999999999999753 36799999999887
Q ss_pred hhHhhh------------hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--------
Q 005661 265 EMFVGV------------GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF-------- 324 (685)
Q Consensus 265 ~~~~g~------------~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~-------- 324 (685)
+..... ....-..+|+.|.. ++||+|||..+.. .....|+..||.-
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCH-----------hHHHHHHHHHHcCceEecCCC
Confidence 653221 11222345554433 4999999998842 2233444444431
Q ss_pred -ccCCCEEEEEecCCc--CcCcc--cccCCCCcccccccCCCCHHHHHH----HHHHHhhhh----cccCcccH-HH---
Q 005661 325 -KQNEGIIVIAATNFP--ESLDK--ALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKV----LKADDVDL-MI--- 387 (685)
Q Consensus 325 -~~~~~ViVIaaTN~p--~~LD~--aLlRpgRFd~~I~i~~Pd~~eR~~----ILk~~l~~~----~~~~~vdl-~~--- 387 (685)
....+|.+|+|||.. +.+-. .|.+. |+ .+.|..|+.++|.. +++++++.. ......+. +.
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 123468999998842 12222 33320 23 34566777777754 455555433 22222222 22
Q ss_pred HHhc-CCCCCHHHHHHHHHHHHHHHH
Q 005661 388 IARG-TPGFSGADLANLVNIAALKAA 412 (685)
Q Consensus 388 la~~-t~G~sgadI~~lv~~A~~~A~ 412 (685)
+-.. .+| +-++|+|+|..++..+.
T Consensus 286 L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 286 LLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred HHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 2222 233 56788888888777663
No 178
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4e-11 Score=131.58 Aligned_cols=210 Identities=28% Similarity=0.372 Sum_probs=125.7
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC-----------------
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG----------------- 252 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~----------------- 252 (685)
...|.||+|++.+|+.|....- |+ +++|++||||||||++|+.+..-+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------Gg---HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------GG---HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------cC---CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 4589999999999999985443 33 3899999999999999999876441
Q ss_pred ------------CCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 253 ------------VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 253 ------------~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
.||..-..+.-....+|.+...--.-... ...+||||||+-.+ ..++++.|-+-
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsL---AH~GVLFLDElpef-----------~~~iLe~LR~P 306 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISL---AHNGVLFLDELPEF-----------KRSILEALREP 306 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceee---ecCCEEEeeccchh-----------hHHHHHHHhCc
Confidence 12222221111111222220000000001 12369999999765 34677777666
Q ss_pred hhcc-----------ccCCCEEEEEecCCcC-----------------------cCcccccCCCCcccccccCCCCHHHH
Q 005661 321 LDGF-----------KQNEGIIVIAATNFPE-----------------------SLDKALVRPGRFDRHIVVPNPDVEGR 366 (685)
Q Consensus 321 ld~~-----------~~~~~ViVIaaTN~p~-----------------------~LD~aLlRpgRFd~~I~i~~Pd~~eR 366 (685)
|+.- .-..++.+|+++|..- .|...|++ |||..++++.++..++
T Consensus 307 LE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~ 384 (490)
T COG0606 307 LENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGEL 384 (490)
T ss_pred cccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHh
Confidence 6531 1234588899999432 23344454 9999999988774433
Q ss_pred H--------------HHHHHHhhh----hcc--c----------------CcccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005661 367 R--------------QIMESHMSK----VLK--A----------------DDVDLMIIARGTPGFSGADLANLVNIAALK 410 (685)
Q Consensus 367 ~--------------~ILk~~l~~----~~~--~----------------~~vdl~~la~~t~G~sgadI~~lv~~A~~~ 410 (685)
. .+++.+-.. ... . .+.++...+-..-++|.+....+++-|..+
T Consensus 385 ~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTi 464 (490)
T COG0606 385 IRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTI 464 (490)
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhh
Confidence 2 122211110 010 1 111222223334467888888888888888
Q ss_pred HHHcCCCccCHHHHHHHHH
Q 005661 411 AAMDGAKAVTMADLEYAKD 429 (685)
Q Consensus 411 A~~~~~~~It~edl~~A~~ 429 (685)
|-.++.+.|...|+.+|+.
T Consensus 465 ADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 465 ADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hcccCcchhhHHHHHHHHh
Confidence 8888888888888888875
No 179
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.15 E-value=3.1e-10 Score=134.11 Aligned_cols=197 Identities=21% Similarity=0.307 Sum_probs=119.1
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM 266 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~ 266 (685)
+.+|++++|.+...+.+.+.+..+... +..|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQS----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 457999999999999888777764332 3479999999999999999998754 679999999876432
Q ss_pred -----Hhhhh-------hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc------
Q 005661 267 -----FVGVG-------ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ------ 326 (685)
Q Consensus 267 -----~~g~~-------~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~--~~~------ 326 (685)
+.|.. .......|..+ ..++||||||+.+. ...+ ..|+..++. +..
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~--------~~~Q---~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMP--------LELQ---PKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCC--------HHHH---HHHHHHHHhCCEEeCCCCCc
Confidence 11210 01112234333 34699999999883 2233 334433332 111
Q ss_pred -CCCEEEEEecCCcC--cCcccccCCC---CcccccccCCCCHHHHHH----HHHHHhhhhcc----c-CcccHHH---H
Q 005661 327 -NEGIIVIAATNFPE--SLDKALVRPG---RFDRHIVVPNPDVEGRRQ----IMESHMSKVLK----A-DDVDLMI---I 388 (685)
Q Consensus 327 -~~~ViVIaaTN~p~--~LD~aLlRpg---RFd~~I~i~~Pd~~eR~~----ILk~~l~~~~~----~-~~vdl~~---l 388 (685)
..++.+|++|+..- .+....+++. |+. .+.|..|+.++|.+ ++++++.+... . ..++.+. |
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 24688999998642 1221111111 222 45678888888876 56666654321 1 1234333 4
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHH
Q 005661 389 ARGTPGFSGADLANLVNIAALKA 411 (685)
Q Consensus 389 a~~t~G~sgadI~~lv~~A~~~A 411 (685)
.....--+-++|++++++|+..+
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhC
Confidence 34333335567777777776543
No 180
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.3e-10 Score=133.15 Aligned_cols=164 Identities=26% Similarity=0.359 Sum_probs=116.0
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCC---CC-eEEEEcCCCCChHHHHHHHHHhcC---CCEEEeeccchhhh
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKL---PK-GVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSEFEEM 266 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~---pk-gvLL~GPPGTGKT~LAralA~e~~---~~fi~vs~s~l~~~ 266 (685)
.-|+|++++...+...|.. .+.|... |. .+||.||+|+|||-||++||..+. ..++.++.|++.++
T Consensus 491 ~rViGQd~AV~avs~aIrr-------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR-------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHH-------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4589999998888877764 1223322 33 478899999999999999999996 89999999999765
Q ss_pred H-----hhhhhHHH-----HHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc---------C
Q 005661 267 F-----VGVGARRV-----RDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ---------N 327 (685)
Q Consensus 267 ~-----~g~~~~~i-----r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~---------~ 327 (685)
+ .|.....+ ..+-+..+.+..|||++|||+.- ...++|-||+.||.-.- -
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEec
Confidence 2 22222111 23444556666799999999964 35567777777764211 1
Q ss_pred CCEEEEEecCCcC----------------------------cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhh
Q 005661 328 EGIIVIAATNFPE----------------------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV 377 (685)
Q Consensus 328 ~~ViVIaaTN~p~----------------------------~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~ 377 (685)
.+.+||+|||--. ...|.++. |+|.+|.|.+.+.+...+|+..++...
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 3589999999321 12344554 888888888888888888888887653
No 181
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.14 E-value=7.5e-10 Score=125.14 Aligned_cols=209 Identities=28% Similarity=0.307 Sum_probs=127.0
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC------------------
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG------------------ 252 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~------------------ 252 (685)
..|.++.|+..+++.+.-. ......++|+||||+|||++++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 4788999998776654311 12234799999999999999999987542
Q ss_pred ----------CCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh
Q 005661 253 ----------VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD 322 (685)
Q Consensus 253 ----------~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld 322 (685)
.||...+.+.-....+|.+...-...+..|.. .+|||||++.+. ..++..|+..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~-----------~~~~~~L~~~LE 319 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE-----------RRTLDALREPIE 319 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC-----------HHHHHHHHHHHH
Confidence 12222211111112333332222344555543 499999998762 233444444442
Q ss_pred cc-----------ccCCCEEEEEecCCcC---------------------cCcccccCCCCcccccccCCCCHHH-----
Q 005661 323 GF-----------KQNEGIIVIAATNFPE---------------------SLDKALVRPGRFDRHIVVPNPDVEG----- 365 (685)
Q Consensus 323 ~~-----------~~~~~ViVIaaTN~p~---------------------~LD~aLlRpgRFd~~I~i~~Pd~~e----- 365 (685)
.- ....++.+|+|+|... .|..+++. |||.++.++.|+.++
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~ 397 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTV 397 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhccc
Confidence 21 1245689999999753 35567776 999999999885321
Q ss_pred -----HHHHHHHHh-------hh-hcccCcccHH----------------HHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 005661 366 -----RRQIMESHM-------SK-VLKADDVDLM----------------IIARGTPGFSGADLANLVNIAALKAAMDGA 416 (685)
Q Consensus 366 -----R~~ILk~~l-------~~-~~~~~~vdl~----------------~la~~t~G~sgadI~~lv~~A~~~A~~~~~ 416 (685)
..+|-+... .. ......+.-. .-+....|+|.+....+++-|...|..+++
T Consensus 398 ~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~ 477 (506)
T PRK09862 398 VPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQS 477 (506)
T ss_pred CCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 111221111 00 0001111100 011234478999999999999999999999
Q ss_pred CccCHHHHHHHHH
Q 005661 417 KAVTMADLEYAKD 429 (685)
Q Consensus 417 ~~It~edl~~A~~ 429 (685)
+.|+.+|+.+|+.
T Consensus 478 ~~V~~~hv~eAl~ 490 (506)
T PRK09862 478 DIITRQHLQEAVS 490 (506)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999976
No 182
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.14 E-value=6.3e-10 Score=128.88 Aligned_cols=190 Identities=24% Similarity=0.288 Sum_probs=123.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC--CCEEEeeccchhhhHhhhhhHHHHHHHHH---------HHhCCCeEEEEcCchh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSEFEEMFVGVGARRVRDLFSA---------AKKRSPCIIFIDEIDA 297 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~--~~fi~vs~s~l~~~~~g~~~~~ir~lF~~---------A~~~~P~ILfIDEID~ 297 (685)
+|||.|+||||||++|++++..++ .||+.+.++...+..+|.. .+...+.. ......++||||||+.
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 799999999999999999999875 4799888654444344421 01100000 0012235999999998
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEEEEEecCCcC---cCcccccCCCCccccccc-CCCC
Q 005661 298 IGGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPE---SLDKALVRPGRFDRHIVV-PNPD 362 (685)
Q Consensus 298 l~~~r~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p~---~LD~aLlRpgRFd~~I~i-~~Pd 362 (685)
+. ..+.+.|+..|+.- ....++.||+++|..+ .|.++|+. ||+.+|.+ ..|+
T Consensus 96 l~-----------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 96 LD-----------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred CC-----------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 83 33445555555421 1124689999999765 68888887 99988766 4567
Q ss_pred HHHHHHHHHHHhhhhc-------------------ccCcc--c---HHHHHhc--CCCCC-HHHHHHHHHHHHHHHHHcC
Q 005661 363 VEGRRQIMESHMSKVL-------------------KADDV--D---LMIIARG--TPGFS-GADLANLVNIAALKAAMDG 415 (685)
Q Consensus 363 ~~eR~~ILk~~l~~~~-------------------~~~~v--d---l~~la~~--t~G~s-gadI~~lv~~A~~~A~~~~ 415 (685)
.++|.+|++.++.... ....+ + +..++.. ..|.+ .+--..+++-|...|+.++
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~g 242 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHG 242 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhC
Confidence 8889999988652110 00111 1 1112211 12333 4445567888889999999
Q ss_pred CCccCHHHHHHHHHHHhc
Q 005661 416 AKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 416 ~~~It~edl~~A~~~v~~ 433 (685)
++.|+.+|+..|..-++.
T Consensus 243 r~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 243 RTEVTEEDLKLAVELVLL 260 (589)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999987764
No 183
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.14 E-value=4.9e-10 Score=111.19 Aligned_cols=129 Identities=22% Similarity=0.333 Sum_probs=91.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCCC------------------------EEEeeccchhhhHhhhhhHHHHHHH
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------------------FFSCSGSEFEEMFVGVGARRVRDLF 279 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------------------fi~vs~s~l~~~~~g~~~~~ir~lF 279 (685)
.+.|..+||+||+|+|||++|+.+++.+... +..+.... . ..+...++.+.
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~ 85 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELV 85 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHH
Confidence 4567789999999999999999999987432 12211110 0 01234566666
Q ss_pred HHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccc
Q 005661 280 SAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRH 355 (685)
Q Consensus 280 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~ 355 (685)
+.+.. ....|++|||+|.+. ....+.|+..|+. ......+|.+||.++.+.+++.+ |+. .
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~~-~ 149 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RCQ-V 149 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hcE-E
Confidence 55543 345799999999883 2345677777775 33456677777888899999987 774 8
Q ss_pred cccCCCCHHHHHHHHHHH
Q 005661 356 IVVPNPDVEGRRQIMESH 373 (685)
Q Consensus 356 I~i~~Pd~~eR~~ILk~~ 373 (685)
+.+++|+.++..++++.+
T Consensus 150 ~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 150 LPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eeCCCCCHHHHHHHHHHc
Confidence 999999999999888776
No 184
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.13 E-value=2.1e-09 Score=127.04 Aligned_cols=354 Identities=14% Similarity=0.114 Sum_probs=170.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC-------CCEEEeeccchhhhHhh--hhhHHH-HHHHHHHHhCCCeEEEEcCchh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG-------VPFFSCSGSEFEEMFVG--VGARRV-RDLFSAAKKRSPCIIFIDEIDA 297 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~-------~~fi~vs~s~l~~~~~g--~~~~~i-r~lF~~A~~~~P~ILfIDEID~ 297 (685)
.+|||+|+||||||.+|+++++... .++..+.+..+.. +.+ .+...+ ...+. ....+++||||+|.
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidk 568 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDK 568 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhh
Confidence 3699999999999999999998653 3455544443321 000 000000 00111 12246999999998
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhh------cc--ccCCCEEEEEecCCcC-------------cCcccccCCCCccccc
Q 005661 298 IGGSRNPKDQQYMKMTLNQLLVELD------GF--KQNEGIIVIAATNFPE-------------SLDKALVRPGRFDRHI 356 (685)
Q Consensus 298 l~~~r~~~~~~~~~~~l~~LL~~ld------~~--~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRFd~~I 356 (685)
+. ...+..+.+++.+-. |. .-+.++.||+|+|... .|+++|++ |||.++
T Consensus 569 ms--------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf 638 (915)
T PTZ00111 569 CH--------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIY 638 (915)
T ss_pred CC--------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEE
Confidence 83 223333444332210 10 1235789999999742 36788998 999775
Q ss_pred -ccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhccc
Q 005661 357 -VVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGS 435 (685)
Q Consensus 357 -~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g~ 435 (685)
.++.|+.+.-..|.++.++........+-. ....++........-.+. ......-..++.+.|.+ .+.-.
T Consensus 639 ~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~lLrk----YI~YA 709 (915)
T PTZ00111 639 LVLDHIDQDTDQLISLSIAKDFLLPHMTGSG---NDEDTYDRSNTMHVEDES--LRSEKDYNKNDLDMLRM----YIKFS 709 (915)
T ss_pred EecCCCChHHHHHHHHHHHHhhccccccccc---ccccchhccccccccccc--cccccccCCCCHHHHHH----HHHHH
Confidence 458888777777766665432110000000 000000000000000000 00000011233333322 11111
Q ss_pred c-cccccccchhhhhhhHHHhhhHHHhhhcC-CCC--------ccceEEEeeCCCccceEEecCCCCcccccHHHHHHHH
Q 005661 436 E-RKSAVISDESRKLTAFHEGGHALVAVHTD-GAL--------PVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLARL 505 (685)
Q Consensus 436 ~-~~~~~~s~~~~~~~A~hEaGhA~va~~~~-~~~--------~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~~i 505 (685)
. ...+.++++... .|+.+|.. ... .+...- .--+.++++.. ........|-.+|++.|
T Consensus 710 R~~~~P~Ls~eA~~---------~i~~~Yv~mR~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~i~iT~RqLEsLI 777 (915)
T PTZ00111 710 KLHCFPKLSDEAKK---------VITREYVKMRQGNFQTSNLDELEHAQ-EDDDDDLYYQS--SGTRMIYVSSRMISSII 777 (915)
T ss_pred hccCCCCCCHHHHH---------HHHHHHHHHhhhhccccccccccccc-ccccccccccc--ccCCcccccHHHHHHHH
Confidence 1 112345554333 23232221 000 000000 00001111111 01123467888999999
Q ss_pred HHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005661 506 DVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDNGKSMSTETRLLIEKEVRNFLDRA 585 (685)
Q Consensus 506 ~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~~~~~s~~~~~~id~eV~~ll~~a 585 (685)
.++ .|--++-|.+ .|+ ..|.+.|.+|-.....+.++.+..|.++++....|.+.+ .+..+ ..+.+++.+.
T Consensus 778 RLs---EA~AK~rLs~-~Vt---~~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G~s~~--~r~~~-~~~~~~i~~~ 847 (915)
T PTZ00111 778 RIS---VSLARMRLST-VVT---PADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTN--KMQQL-NQMYEQVLSV 847 (915)
T ss_pred HHH---HHHhhhcCcC-ccc---HHHHHHHHHHHHHHHhhhcccccCCcccceeeccCCcHH--HHHHH-HHHHHHHHHH
Confidence 887 6667888876 466 799999999999999999999999999876544343322 22221 1222222222
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH--------HccCCCHHHHHHHHHhhh
Q 005661 586 YNNAKTILTMHSKELHALANALL--------EHETLSGSQIKALLAQVN 626 (685)
Q Consensus 586 ~~~a~~iL~~~~~~L~~lA~~Ll--------e~etL~~~ei~~il~~~~ 626 (685)
.......-....-.++.|.+.+. +++-++.++++++|....
T Consensus 848 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~ 896 (915)
T PTZ00111 848 LTRSSNQDSNKSLDLNEVLSLCHKTFKDNRDHKDGEIYKLISEVLNKMV 896 (915)
T ss_pred HHhhhccccCCceeHHHHHHHHHhhccccchhccCCCHHHHHHHHHHHH
Confidence 11100000000111233332221 556799999999997754
No 185
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=6e-10 Score=119.58 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=123.2
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-----------------
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP----------------- 254 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~----------------- 254 (685)
.|++|+|++++++.|.+.+. ..+.|..+||+||+|+||+++|+++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~-----------~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK-----------QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 58999999999999998876 34567799999999999999999999876321
Q ss_pred -EEEeecc------chhhhH---hh--------hhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHH
Q 005661 255 -FFSCSGS------EFEEMF---VG--------VGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKM 312 (685)
Q Consensus 255 -fi~vs~s------~l~~~~---~g--------~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~ 312 (685)
++.+... .....+ .| .....+|++.+.+. .....|++||++|.+. ..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~~ 139 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------EA 139 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------HH
Confidence 1111110 000000 00 11234566655543 2345799999999882 34
Q ss_pred HHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcC
Q 005661 313 TLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGT 392 (685)
Q Consensus 313 ~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t 392 (685)
..|.||..|+... +.++|..|+.++.|-|.+++ |. ..+.|++|+.++..++|+...... ..+.+...++...
T Consensus 140 aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~--~~~~~~~~l~~~a 211 (314)
T PRK07399 140 AANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE--ILNINFPELLALA 211 (314)
T ss_pred HHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc--cchhHHHHHHHHc
Confidence 5688888888543 44667777889999999998 77 488999999999999888764321 1122245666666
Q ss_pred CCCCHHHHHHHHH
Q 005661 393 PGFSGADLANLVN 405 (685)
Q Consensus 393 ~G~sgadI~~lv~ 405 (685)
.| +++...++++
T Consensus 212 ~G-s~~~al~~l~ 223 (314)
T PRK07399 212 QG-SPGAAIANIE 223 (314)
T ss_pred CC-CHHHHHHHHH
Confidence 65 5555554444
No 186
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.12 E-value=5.1e-10 Score=123.84 Aligned_cols=141 Identities=26% Similarity=0.398 Sum_probs=86.7
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-------EEEeecc----
Q 005661 193 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------FFSCSGS---- 261 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------fi~vs~s---- 261 (685)
++++.+.++..+.+. ..+. ..++++|+||||||||++|+.+|..+... ++.++.+
T Consensus 174 l~d~~i~e~~le~l~---~~L~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETIL---KRLT-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHH---HHHh-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 566777666644443 3222 23589999999999999999999887431 2223221
Q ss_pred chhhhH--hhhhh----HHHHHHHHHHHhC--CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHh------------
Q 005661 262 EFEEMF--VGVGA----RRVRDLFSAAKKR--SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVEL------------ 321 (685)
Q Consensus 262 ~l~~~~--~g~~~----~~ir~lF~~A~~~--~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~l------------ 321 (685)
++...+ .+.+- ..+.++...|+.. .|++||||||+.-.. .+++.+++..|
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v~ 309 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSVP 309 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhcccccccccccee
Confidence 222221 11111 1234445566543 589999999996531 12222222222
Q ss_pred --------hccccCCCEEEEEecCCcC----cCcccccCCCCcccccccCC
Q 005661 322 --------DGFKQNEGIIVIAATNFPE----SLDKALVRPGRFDRHIVVPN 360 (685)
Q Consensus 322 --------d~~~~~~~ViVIaaTN~p~----~LD~aLlRpgRFd~~I~i~~ 360 (685)
+.|.-..++.||+|+|..+ .+|.||+| ||. .|++.+
T Consensus 310 l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 310 LTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 2355677899999999887 79999999 995 455643
No 187
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.12 E-value=1.1e-09 Score=117.00 Aligned_cols=177 Identities=27% Similarity=0.301 Sum_probs=115.4
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC---------------------
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG--------------------- 252 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~--------------------- 252 (685)
++++|.+++...+...+.. ..+.|..+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 3567777777776655542 124565899999999999999999999886
Q ss_pred ---CCEEEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 005661 253 ---VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK 325 (685)
Q Consensus 253 ---~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~ 325 (685)
-.++.++.++....- .....++++-..... ...-|++|||+|.+. ....+.++..++ .
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt-----------~~A~nallk~lE--e 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT-----------EDAANALLKTLE--E 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh-----------HHHHHHHHHHhc--c
Confidence 356666666543321 123345554444322 335799999999883 356778888777 4
Q ss_pred cCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHH
Q 005661 326 QNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVN 405 (685)
Q Consensus 326 ~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~ 405 (685)
+..+..+|.+||.++.+-+.+++ |+. .+.|++|+...+....+ +..+..++.. +.+|++..++
T Consensus 136 p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e----------~~~l~~i~~~----~~gd~r~~i~ 198 (325)
T COG0470 136 PPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE----------DQGLEEIAAV----AEGDARKAIN 198 (325)
T ss_pred CCCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh----------ccchhHHHHH----HHHHHHcCCC
Confidence 56678899999999999888887 664 67787765555444433 2223333333 3446666665
Q ss_pred HHHHHHH
Q 005661 406 IAALKAA 412 (685)
Q Consensus 406 ~A~~~A~ 412 (685)
.....+.
T Consensus 199 ~lq~~~~ 205 (325)
T COG0470 199 PLQALAA 205 (325)
T ss_pred HHHHHHH
Confidence 5444443
No 188
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=1.3e-09 Score=126.14 Aligned_cols=252 Identities=12% Similarity=0.127 Sum_probs=140.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEE-ee---ccch
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS-CS---GSEF 263 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~-vs---~s~l 263 (685)
..+.+++||+|.++..++++.++..... +....+.++|+||||||||++++.+|++++..++. .+ |...
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 4567899999999999988877764322 22233459999999999999999999998865533 11 1100
Q ss_pred hhhH------------hhhhhHHHHHHHHHHHh----------CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH-H
Q 005661 264 EEMF------------VGVGARRVRDLFSAAKK----------RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV-E 320 (685)
Q Consensus 264 ~~~~------------~g~~~~~ir~lF~~A~~----------~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~-~ 320 (685)
...| .......++.++..+.. ....|||||||+.+... ....+..+|. .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~lq~lLr~~ 222 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRALHEILRWK 222 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHHHHHHHHHH
Confidence 0000 01122344555555431 24579999999987532 1223444444 2
Q ss_pred hhccccCCCEEEEEecC-CcC--------------cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc--cCc-
Q 005661 321 LDGFKQNEGIIVIAATN-FPE--------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK--ADD- 382 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN-~p~--------------~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~--~~~- 382 (685)
.. ....+.+|++++ .+. .|.++++...|.. +|.|++.+.....+.|+..+..... ..+
T Consensus 223 ~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~ 298 (637)
T TIGR00602 223 YV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKNGEKI 298 (637)
T ss_pred hh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhcccccc
Confidence 11 223344444333 121 1335666423443 7899999999988888887765311 111
Q ss_pred -----ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-------cCCCccCHHHHHHHHHHHhccccc-c--cccccchhh
Q 005661 383 -----VDLMIIARGTPGFSGADLANLVNIAALKAAM-------DGAKAVTMADLEYAKDKIMMGSER-K--SAVISDESR 447 (685)
Q Consensus 383 -----vdl~~la~~t~G~sgadI~~lv~~A~~~A~~-------~~~~~It~edl~~A~~~v~~g~~~-~--~~~~s~~~~ 447 (685)
-.+..|+.. +.+||+..++.-...+.+ .+...++..|...+..+...-... + -..++..+.
T Consensus 299 ~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~~~rd~ 374 (637)
T TIGR00602 299 KVPKKTSVELLCQG----CSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQALGGKDV 374 (637)
T ss_pred ccCCHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhhccccc
Confidence 134455554 455999888855544332 223456666666655433110000 0 001222233
Q ss_pred hhhhHHHhhhHHHhh
Q 005661 448 KLTAFHEGGHALVAV 462 (685)
Q Consensus 448 ~~~A~hEaGhA~va~ 462 (685)
-...+|-.|..|-.-
T Consensus 375 sl~lfhalgkily~K 389 (637)
T TIGR00602 375 SLFLFRALGKILYCK 389 (637)
T ss_pred hhHHHHHhChhhccc
Confidence 445677777766543
No 189
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.11 E-value=1.8e-10 Score=108.38 Aligned_cols=113 Identities=34% Similarity=0.388 Sum_probs=69.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh--HhhhhhHH------HHHHHHHHHhCCCeEEEEcCchhhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--FVGVGARR------VRDLFSAAKKRSPCIIFIDEIDAIGG 300 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~--~~g~~~~~------ir~lF~~A~~~~P~ILfIDEID~l~~ 300 (685)
+|||+||||||||++|+.+|+.++.+++.++++...+. +.|.-.-. ....+..+. ..++++|||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 58999999999999999999999999999988764332 22210000 000000000 156899999999761
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcc-------c-cCC------CEEEEEecCCcC----cCcccccCCCCc
Q 005661 301 SRNPKDQQYMKMTLNQLLVELDGF-------K-QNE------GIIVIAATNFPE----SLDKALVRPGRF 352 (685)
Q Consensus 301 ~r~~~~~~~~~~~l~~LL~~ld~~-------~-~~~------~ViVIaaTN~p~----~LD~aLlRpgRF 352 (685)
......++.++..-.-. . ... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 -------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 23333444444321100 1 111 489999999988 89999998 87
No 190
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.9e-10 Score=117.66 Aligned_cols=133 Identities=23% Similarity=0.338 Sum_probs=81.1
Q ss_pred eEEEEcCchhhcCCCCCCc-hHHHHHHHHHHHHHhhcc--------ccCCCEEEEEecC----CcCcCcccccCCCCccc
Q 005661 288 CIIFIDEIDAIGGSRNPKD-QQYMKMTLNQLLVELDGF--------KQNEGIIVIAATN----FPESLDKALVRPGRFDR 354 (685)
Q Consensus 288 ~ILfIDEID~l~~~r~~~~-~~~~~~~l~~LL~~ld~~--------~~~~~ViVIaaTN----~p~~LD~aLlRpgRFd~ 354 (685)
+|+||||||.++.+...+. .-..+.+...||-.++|. -..+++++|++-- .|..|-|.|. |||..
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCce
Confidence 5999999999987664332 223445556666666653 2346788888754 5677778776 69999
Q ss_pred ccccCCCCHHHHHHHHHHH----hhhh---cccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 355 HIVVPNPDVEGRRQIMESH----MSKV---LKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 355 ~I~i~~Pd~~eR~~ILk~~----l~~~---~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
.+++...+.++-..||..- ++++ ....++++ -|+-.-|..+..-|... ......|...-+...
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l--------~FtddaI~~iAeiA~~v--N~~~ENIGARRLhTv 399 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVEL--------EFTDDAIKRIAEIAYQV--NEKTENIGARRLHTV 399 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeE--------EecHHHHHHHHHHHHHh--cccccchhHHHHHHH
Confidence 9999999999988887421 1111 11222222 25555666655433221 223345556666666
Q ss_pred HHHHh
Q 005661 428 KDKIM 432 (685)
Q Consensus 428 ~~~v~ 432 (685)
+++++
T Consensus 400 lErlL 404 (444)
T COG1220 400 LERLL 404 (444)
T ss_pred HHHHH
Confidence 66554
No 191
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.07 E-value=6.1e-09 Score=105.28 Aligned_cols=165 Identities=22% Similarity=0.319 Sum_probs=118.4
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 265 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~ 265 (685)
..+.+.+|+|.|.+++.|.+--.. |. .+.+-.+|||+|..|||||+|+||+.++. +..++.|+..++..
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~------F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~ 126 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQ------FA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT 126 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHH------HH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh
Confidence 458899999999999988754443 22 24455689999999999999999998877 67789998877654
Q ss_pred hHhhhhhHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCcCcC
Q 005661 266 MFVGVGARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--KQNEGIIVIAATNFPESL 342 (685)
Q Consensus 266 ~~~g~~~~~ir~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~--~~~~~ViVIaaTN~p~~L 342 (685)
+..+++..+.. ..-|||+|++- + ..+ +..- ..|-..|||- ..+.+|+|.+|+|+-..|
T Consensus 127 ---------Lp~l~~~Lr~~~~kFIlFcDDLS-F-----e~g-d~~y---K~LKs~LeG~ve~rP~NVl~YATSNRRHLl 187 (287)
T COG2607 127 ---------LPDLVELLRARPEKFILFCDDLS-F-----EEG-DDAY---KALKSALEGGVEGRPANVLFYATSNRRHLL 187 (287)
T ss_pred ---------HHHHHHHHhcCCceEEEEecCCC-C-----CCC-chHH---HHHHHHhcCCcccCCCeEEEEEecCCcccc
Confidence 44566666543 35799999974 1 111 1122 2333335553 345789999999987655
Q ss_pred cccc--------------------cCCCCcccccccCCCCHHHHHHHHHHHhhhhccc
Q 005661 343 DKAL--------------------VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA 380 (685)
Q Consensus 343 D~aL--------------------lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~ 380 (685)
+... --..||...+.|++++.++-..|+.++++...++
T Consensus 188 ~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 188 PEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred cHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 4211 1124999999999999999999999999876443
No 192
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.07 E-value=8.3e-09 Score=108.73 Aligned_cols=218 Identities=20% Similarity=0.272 Sum_probs=134.0
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeeccc--
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSE-- 262 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~s~-- 262 (685)
+.-+|+..+++.|..+.+.+..|.. .. +.++||+|++|.|||++++.+.... .+|++.+....
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~-----~R-mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR-----HR-MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc-----cC-CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 3458999999999988888888864 22 3479999999999999999998654 35777775421
Q ss_pred ----hhhhH---hhh-------hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCC
Q 005661 263 ----FEEMF---VGV-------GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNE 328 (685)
Q Consensus 263 ----l~~~~---~g~-------~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~ 328 (685)
|.... .|. ..+.-..+....+..++-+|+|||++.+.... ...++.+..+|..+.+ .-.-
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs-----~~~qr~~Ln~LK~L~N-eL~i 181 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS-----YRKQREFLNALKFLGN-ELQI 181 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc-----HHHHHHHHHHHHHHhh-ccCC
Confidence 11110 010 11222334455567788899999999975322 1112222222332210 1122
Q ss_pred CEEEEEecCCcC--cCcccccCCCCcccccccCCCCH-HHHHHHHHHHhhhhcc--cCcccHH----HHHhcCCCCCHHH
Q 005661 329 GIIVIAATNFPE--SLDKALVRPGRFDRHIVVPNPDV-EGRRQIMESHMSKVLK--ADDVDLM----IIARGTPGFSGAD 399 (685)
Q Consensus 329 ~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~i~~Pd~-~eR~~ILk~~l~~~~~--~~~vdl~----~la~~t~G~sgad 399 (685)
.++.+|+-.-.. .-|+.+.+ ||+ .+.+|.... ++-..++..+-....+ .+.+.-. .|-..+.|. -++
T Consensus 182 piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-iG~ 257 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-IGE 257 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-hHH
Confidence 345555433222 24677777 997 556665433 3444566555443322 2233322 345556664 467
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
|.++++.|+..|.+.|...||.+.++..
T Consensus 258 l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 258 LSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 9999999999999999999999999763
No 193
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.05 E-value=8.2e-10 Score=123.76 Aligned_cols=205 Identities=19% Similarity=0.238 Sum_probs=120.7
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~ 268 (685)
.|.+++|.+...+.+.+.+..+.. ....++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 567889988887777766654322 22379999999999999999998765 57999999998754322
Q ss_pred hhh------------hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-------CCC
Q 005661 269 GVG------------ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-------NEG 329 (685)
Q Consensus 269 g~~------------~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~-------~~~ 329 (685)
... .......|.. ...++||||||+.+. ...+..+..++..- .+.. ..+
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~--------~~~q~~l~~~l~~~-~~~~~~~~~~~~~~ 274 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLP--------LNLQAKLLRFLQER-VIERLGGREEIPVD 274 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCC--------HHHHHHHHHHHhhC-eEEeCCCCceeeec
Confidence 110 0000111222 235699999999883 22333333333321 1111 125
Q ss_pred EEEEEecCCcC-------cCcccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhcc----c-CcccHHH---HHh
Q 005661 330 IIVIAATNFPE-------SLDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVLK----A-DDVDLMI---IAR 390 (685)
Q Consensus 330 ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~i~~Pd~~eR~~----ILk~~l~~~~~----~-~~vdl~~---la~ 390 (685)
+.+|++|+..- .+.+.|.. |+. .+.+..|+.++|.+ ++++++.+... . ..++-+. |..
T Consensus 275 ~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (445)
T TIGR02915 275 VRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEA 351 (445)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHh
Confidence 78888888641 12222222 332 45677888888876 56666654322 1 2344333 444
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005661 391 GTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 424 (685)
Q Consensus 391 ~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 424 (685)
...--+.++|+++++.|+..+ ....|+.+|+
T Consensus 352 ~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 352 HAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 433335567777777766543 4457777765
No 194
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.04 E-value=7.2e-09 Score=107.05 Aligned_cols=129 Identities=23% Similarity=0.218 Sum_probs=80.0
Q ss_pred CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc-------------CcCcccccCCCCc
Q 005661 286 SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP-------------ESLDKALVRPGRF 352 (685)
Q Consensus 286 ~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p-------------~~LD~aLlRpgRF 352 (685)
-|.+|||||++-+ ....+.-|-..++ .+-.-+||.+||+- .-+++.|+. |+
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl 359 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL 359 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he
Confidence 3667777777755 1222333333333 22234667777743 334555554 44
Q ss_pred ccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 353 DRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 353 d~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
.+|..-+++.++.++|+++..+-..+.- +-.+..++.....-|-+-..+|+.-|.+.|...+++.|..+|+++.-+-.
T Consensus 360 -~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 360 -LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELF 438 (456)
T ss_pred -eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHH
Confidence 2455667888899999999886543332 22245566554444555556777888889999999999999999876543
No 195
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.03 E-value=3.6e-09 Score=113.60 Aligned_cols=78 Identities=45% Similarity=0.675 Sum_probs=54.7
Q ss_pred cccCCccccCCCCCCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC--
Q 005661 175 KGLGLHEEVQPSLESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-- 252 (685)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~-- 252 (685)
+++++.+...+ ....+.++|+.++++.+--+++.++..+. -.+++||.||||||||.||-++|+++|
T Consensus 9 ~GLGld~~~~~----~~~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 9 KGLGLDENGEA----RYIADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp -S--B-TTS-B-----SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred ccCCcCCCCCE----eeccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 34555443322 33357899999999999988888766432 346999999999999999999999996
Q ss_pred CCEEEeeccch
Q 005661 253 VPFFSCSGSEF 263 (685)
Q Consensus 253 ~~fi~vs~s~l 263 (685)
+||+.++++++
T Consensus 78 ~PF~~isgSEi 88 (398)
T PF06068_consen 78 VPFVSISGSEI 88 (398)
T ss_dssp S-EEEEEGGGG
T ss_pred CCeeEccccee
Confidence 89999988875
No 196
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.02 E-value=9.1e-10 Score=107.85 Aligned_cols=134 Identities=29% Similarity=0.427 Sum_probs=81.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhH-----
Q 005661 196 VKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----- 267 (685)
Q Consensus 196 V~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~----- 267 (685)
|+|.+...+++.+.+..+.. .|..|||+|++||||+++|++|.+.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 57888888888777765432 34589999999999999999999866 5799999999875432
Q ss_pred hhhhh-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-------CCCEEEE
Q 005661 268 VGVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-------NEGIIVI 333 (685)
Q Consensus 268 ~g~~~-------~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~-------~~~ViVI 333 (685)
.|... .....+|..|... +||||||+.|. ...+..+..+|..- .|.. ..++.||
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~--------~~~Q~~Ll~~l~~~-~~~~~g~~~~~~~~~RiI 138 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLP--------PELQAKLLRVLEEG-KFTRLGSDKPVPVDVRII 138 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS---------HHHHHHHHHHHHHS-EEECCTSSSEEE--EEEE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhH--------HHHHHHHHHHHhhc-hhccccccccccccceEE
Confidence 22210 1123566666444 99999999983 22343444444321 1211 2369999
Q ss_pred EecCCcCcCcccccCCCCccc
Q 005661 334 AATNFPESLDKALVRPGRFDR 354 (685)
Q Consensus 334 aaTN~p~~LD~aLlRpgRFd~ 354 (685)
++|+.+ |... ...|+|..
T Consensus 139 ~st~~~--l~~~-v~~g~fr~ 156 (168)
T PF00158_consen 139 ASTSKD--LEEL-VEQGRFRE 156 (168)
T ss_dssp EEESS---HHHH-HHTTSS-H
T ss_pred eecCcC--HHHH-HHcCCChH
Confidence 999963 3333 33366653
No 197
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=2.1e-09 Score=116.20 Aligned_cols=149 Identities=16% Similarity=0.166 Sum_probs=107.4
Q ss_pred CCCcCCC-cHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC----------------
Q 005661 192 KFSDVKG-VDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---------------- 254 (685)
Q Consensus 192 ~f~dV~G-~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~---------------- 254 (685)
.|+.|.| ++.+++.|+..+. ..+.|..+||+||+|+|||++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 8889888887765 35677889999999999999999999886332
Q ss_pred --------EEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh
Q 005661 255 --------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD 322 (685)
Q Consensus 255 --------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld 322 (685)
+..+... .. ..+...+|++.+.+. ....-|++|||+|.+. ....|.||..|+
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhc
Confidence 1111110 00 012244566555443 2234699999999882 445688888888
Q ss_pred ccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHH
Q 005661 323 GFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMES 372 (685)
Q Consensus 323 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~ 372 (685)
. +++++++|.+|+.+..|-+.+++ |.. .+++++|+.++..++|+.
T Consensus 136 E--Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 E--PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred C--CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 4 56677888888889999999988 774 789999999888777653
No 198
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.00 E-value=2.3e-09 Score=121.00 Aligned_cols=203 Identities=22% Similarity=0.278 Sum_probs=123.5
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~ 268 (685)
.|.+++|.+...+.+.+.+..+... ...+||+|++|||||++|+++.... +.||+.++|+.+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRS----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhcc----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4778999998887777666543322 3379999999999999999998876 57999999998754321
Q ss_pred hhhhHHHHHHHHHH---------------HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--c------
Q 005661 269 GVGARRVRDLFSAA---------------KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--K------ 325 (685)
Q Consensus 269 g~~~~~ir~lF~~A---------------~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~--~------ 325 (685)
...+|... .....+.|||||||.+. ...+ ..|+..++.- .
T Consensus 206 ------~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~--------~~~q---~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 206 ------ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP--------LDVQ---TRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred ------HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC--------HHHH---HHHHHHHhcCcEEeCCCCC
Confidence 11222211 11234689999999883 2233 3444433321 1
Q ss_pred -cCCCEEEEEecCCcC-------cCcccccCCCCcccccccCCCCHHHHHH----HHHHHhhhhccc-----CcccHHH-
Q 005661 326 -QNEGIIVIAATNFPE-------SLDKALVRPGRFDRHIVVPNPDVEGRRQ----IMESHMSKVLKA-----DDVDLMI- 387 (685)
Q Consensus 326 -~~~~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~i~~Pd~~eR~~----ILk~~l~~~~~~-----~~vdl~~- 387 (685)
...++.+|++|+..- .+.+.|.. ||. .+.+..|..++|.+ ++.+++.+.... ..++.+.
T Consensus 269 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 269 PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 123578888887531 23334443 443 45666777776665 666776543221 1233333
Q ss_pred --HHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 388 --IARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 388 --la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
|..+..--+-++|+++++.+...+ ....|+.+|+...
T Consensus 346 ~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~ 384 (469)
T PRK10923 346 AALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGE 384 (469)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHh
Confidence 444433334567777777666544 4567888888543
No 199
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.99 E-value=1.3e-09 Score=107.11 Aligned_cols=111 Identities=31% Similarity=0.366 Sum_probs=75.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCC----CEEEeeccchhhhHhhhhhHHHHHHHHHH----HhCCCeEEEEcCchhhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGV----PFFSCSGSEFEEMFVGVGARRVRDLFSAA----KKRSPCIIFIDEIDAIGG 300 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~----~fi~vs~s~l~~~~~g~~~~~ir~lF~~A----~~~~P~ILfIDEID~l~~ 300 (685)
.+||+||+|+|||.+|+++|..+.. +++.++++++... +.....+..++..+ ......||||||||++..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 5899999999999999999999996 9999999998771 11112222222211 111123999999999976
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcc---------ccCCCEEEEEecCCcCc
Q 005661 301 SRNPKDQQYMKMTLNQLLVELDGF---------KQNEGIIVIAATNFPES 341 (685)
Q Consensus 301 ~r~~~~~~~~~~~l~~LL~~ld~~---------~~~~~ViVIaaTN~p~~ 341 (685)
......+.....+.+.||..+++- -...++++|+|+|.-..
T Consensus 83 ~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 83 SNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred cccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 533344444556677777777642 12357999999997654
No 200
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.9e-09 Score=114.74 Aligned_cols=161 Identities=25% Similarity=0.391 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeec-cchhhhHhhhhhHHHHHHHH
Q 005661 202 AKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG-SEFEEMFVGVGARRVRDLFS 280 (685)
Q Consensus 202 ~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~-s~l~~~~~g~~~~~ir~lF~ 280 (685)
..++-.-++..+++++++ .-..+||+||||+|||.||-.+|...+.||+.+-. .++........-..++..|+
T Consensus 519 il~~G~llv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~ 592 (744)
T KOG0741|consen 519 ILDDGKLLVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFE 592 (744)
T ss_pred HHhhHHHHHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHH
Confidence 333444556666666542 23479999999999999999999999999998744 33333222233456899999
Q ss_pred HHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCC-CEEEEEecCCcCcCc-ccccCCCCccccccc
Q 005661 281 AAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNE-GIIVIAATNFPESLD-KALVRPGRFDRHIVV 358 (685)
Q Consensus 281 ~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~-~ViVIaaTN~p~~LD-~aLlRpgRFd~~I~i 358 (685)
.|.+..-+||++|+|+.|.. -.+-+..+.+.++..|+..+....+.+ +.+|++||.+.+.|. -.++. .|+-.+.+
T Consensus 593 DAYkS~lsiivvDdiErLiD-~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~V 669 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLD-YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHV 669 (744)
T ss_pred HhhcCcceEEEEcchhhhhc-ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeec
Confidence 99998889999999998863 123344566777777877777655544 577777877666554 23333 78888888
Q ss_pred CCCCH-HHHHHHHH
Q 005661 359 PNPDV-EGRRQIME 371 (685)
Q Consensus 359 ~~Pd~-~eR~~ILk 371 (685)
|.-.. ++..+++.
T Consensus 670 pnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLE 683 (744)
T ss_pred CccCchHHHHHHHH
Confidence 87654 55555543
No 201
>PRK04132 replication factor C small subunit; Provisional
Probab=98.99 E-value=5.6e-09 Score=123.93 Aligned_cols=170 Identities=19% Similarity=0.174 Sum_probs=119.9
Q ss_pred EEEEc--CCCCChHHHHHHHHHhc-----CCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhC------CCeEEEEcCch
Q 005661 230 VLLVG--PPGTGKTMLARAIAGEA-----GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKR------SPCIIFIDEID 296 (685)
Q Consensus 230 vLL~G--PPGTGKT~LAralA~e~-----~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~------~P~ILfIDEID 296 (685)
-+..| |++.||||+|+++|+++ +.+++.+|+++... ...+|++...+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45668 99999999999999998 56899999998532 23455555443322 23699999999
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhh
Q 005661 297 AIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSK 376 (685)
Q Consensus 297 ~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~ 376 (685)
.|. ....+.|+..|+. ...++.+|++||.+..+.+++++ |+ ..+.|++|+.++....|+..+.+
T Consensus 641 ~Lt-----------~~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 641 ALT-----------QDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred cCC-----------HHHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHh
Confidence 883 2345677777774 44678899999999999999987 77 48899999999999988888765
Q ss_pred hccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 377 VLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 377 ~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
.... ++-.+..++..+.| |++.+++.....+.. ...|+.+++...
T Consensus 705 Egi~i~~e~L~~Ia~~s~G----DlR~AIn~Lq~~~~~--~~~It~~~V~~~ 750 (846)
T PRK04132 705 EGLELTEEGLQAILYIAEG----DMRRAINILQAAAAL--DDKITDENVFLV 750 (846)
T ss_pred cCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence 4322 23346677877766 555555433332322 245777776554
No 202
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.99 E-value=4.1e-09 Score=118.46 Aligned_cols=206 Identities=23% Similarity=0.315 Sum_probs=122.8
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~ 268 (685)
.+.+++|.+.....+.+.+..+... ...+|++|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALS----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCC----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 4667888888777766655543322 2379999999999999999997754 57999999998754321
Q ss_pred -----hhhhH-------HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-------C
Q 005661 269 -----GVGAR-------RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ-------N 327 (685)
Q Consensus 269 -----g~~~~-------~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~--~~~-------~ 327 (685)
|.... .....|.. ...++|||||||.+. ... ...|+..++. +.. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~--------~~~---q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMP--------LVL---QAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCC--------HHH---HHHHHHHHhcCcEEeCCCCceee
Confidence 10000 00111222 234699999999884 222 3344444432 111 2
Q ss_pred CCEEEEEecCCcCcCcccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhccc-----CcccHHH---H
Q 005661 328 EGIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVLKA-----DDVDLMI---I 388 (685)
Q Consensus 328 ~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~i~~Pd~~eR~~----ILk~~l~~~~~~-----~~vdl~~---l 388 (685)
.++.||++||..- ..+.+.|+|.. .+.+..|+.++|.+ ++.+++.+.... ..++.+. |
T Consensus 277 ~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 353 (457)
T PRK11361 277 VDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLL 353 (457)
T ss_pred eceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 3578999998631 12233344443 45677888888865 555666544221 2344333 4
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 389 ARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 389 a~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
..+..--+-++|+++++.|... .....|+.+|+...
T Consensus 354 ~~~~wpgNv~eL~~~~~~~~~~---~~~~~i~~~~l~~~ 389 (457)
T PRK11361 354 TAWSWPGNIRELSNVIERAVVM---NSGPIIFSEDLPPQ 389 (457)
T ss_pred HcCCCCCcHHHHHHHHHHHHHh---CCCCcccHHHChHh
Confidence 4443333557777777776654 34567888887543
No 203
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=4.4e-09 Score=113.58 Aligned_cols=132 Identities=23% Similarity=0.368 Sum_probs=97.3
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCCC------------------------EEEeeccchhhhHhhhhhHHHHHHH
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------------------FFSCSGSEFEEMFVGVGARRVRDLF 279 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------------------fi~vs~s~l~~~~~g~~~~~ir~lF 279 (685)
.+.|.++||+||+|+|||++|+++|+.+.+. ++.+...+- . ...+...+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHH
Confidence 5678899999999999999999999987541 122211000 0 012335667766
Q ss_pred HHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccc
Q 005661 280 SAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRH 355 (685)
Q Consensus 280 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~ 355 (685)
+.+.. ...-|++||++|.+. ....|.||..|+. +..++++|.+|+.++.|.|.+++ |+. .
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~-----------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~-~ 159 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMN-----------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ-Q 159 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCC-----------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-e
Confidence 55532 345699999999883 4567889988884 55788999999999999999998 885 6
Q ss_pred cccCCCCHHHHHHHHHHHh
Q 005661 356 IVVPNPDVEGRRQIMESHM 374 (685)
Q Consensus 356 I~i~~Pd~~eR~~ILk~~l 374 (685)
+.|++|+.++..+.|....
T Consensus 160 ~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 160 QACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eeCCCcCHHHHHHHHHHhc
Confidence 8999999998888877654
No 204
>PRK08116 hypothetical protein; Validated
Probab=98.95 E-value=3.6e-09 Score=111.28 Aligned_cols=123 Identities=23% Similarity=0.362 Sum_probs=74.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhh----hhHHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV----GARRVRDLFSAAKKRSPCIIFIDEIDAIG 299 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~----~~~~ir~lF~~A~~~~P~ILfIDEID~l~ 299 (685)
+.|++|+|+||||||+||.++++++ +.++++++..++...+... .......+++... ...+|+|||++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 4589999999999999999999986 7899999988876553221 1112223343332 3459999999643
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc-Cc----CcccccCCCCc---ccccccCCCCH
Q 005661 300 GSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP-ES----LDKALVRPGRF---DRHIVVPNPDV 363 (685)
Q Consensus 300 ~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p-~~----LD~aLlRpgRF---d~~I~i~~Pd~ 363 (685)
...++....+..++... . ..+..+|.|||.+ +. ++..+.+ |+ ...|.++.||.
T Consensus 191 -----~~t~~~~~~l~~iin~r---~-~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 -----RDTEWAREKVYNIIDSR---Y-RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred -----CCCHHHHHHHHHHHHHH---H-HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 12234444444454432 1 2344577788865 23 3444444 43 22355556664
No 205
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.95 E-value=7e-09 Score=104.26 Aligned_cols=205 Identities=20% Similarity=0.271 Sum_probs=122.2
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC-----CEEEeeccc
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-----PFFSCSGSE 262 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~-----~fi~vs~s~ 262 (685)
..+..+.||+|.++..+.|+-+... +..| +++|.|||||||||-+.++|+++=. -++.+|.|+
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~-----------gnmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKE-----------GNMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHc-----------CCCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 4556799999999999988876652 3344 6999999999999999999998722 345666665
Q ss_pred hhhhHhhhhhHHHHHHHHHHHhCCC----eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 263 FEEMFVGVGARRVRDLFSAAKKRSP----CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 263 l~~~~~g~~~~~ir~lF~~A~~~~P----~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
-..- .+ .++--..|.+-+-.-| .||++||.|.+.. + .++.+.. .|+-+.. ...+..++|.
T Consensus 89 eRGI--Dv-VRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~----g----AQQAlRR---tMEiyS~--ttRFalaCN~ 152 (333)
T KOG0991|consen 89 ERGI--DV-VRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA----G----AQQALRR---TMEIYSN--TTRFALACNQ 152 (333)
T ss_pred cccc--HH-HHHHHHHHHHhhccCCCCceeEEEeeccchhhh----H----HHHHHHH---HHHHHcc--cchhhhhhcc
Confidence 3321 11 1222345555443222 5999999998842 1 2222222 2332222 3456678888
Q ss_pred cCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 005661 339 PESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAK 417 (685)
Q Consensus 339 p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~ 417 (685)
.+.+-+.+.+ |+. .+.+...+..+...-|....+..... .+--++.+....+| |+++.+|. +.+...+-.
T Consensus 153 s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNn--LQst~~g~g 223 (333)
T KOG0991|consen 153 SEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNN--LQSTVNGFG 223 (333)
T ss_pred hhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHH--HHHHhcccc
Confidence 8887777766 553 34444444444333333333222111 22235556655555 88888875 345556667
Q ss_pred ccCHHHHHHHHH
Q 005661 418 AVTMADLEYAKD 429 (685)
Q Consensus 418 ~It~edl~~A~~ 429 (685)
.|+.+.+-+.++
T Consensus 224 ~Vn~enVfKv~d 235 (333)
T KOG0991|consen 224 LVNQENVFKVCD 235 (333)
T ss_pred ccchhhhhhccC
Confidence 788777766554
No 206
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.94 E-value=9.2e-09 Score=111.82 Aligned_cols=216 Identities=27% Similarity=0.381 Sum_probs=127.5
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-------CCCEEEe---
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------GVPFFSC--- 258 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-------~~~fi~v--- 258 (685)
.+..|.-++|+|..|..|--- .-+|+ -.|+||.|+.|||||+++|+|+.-+ |+||-.=
T Consensus 12 ~~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 12 ENLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred hccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 356799999999998877521 11222 1379999999999999999999977 3322100
Q ss_pred ---eccc-------------------hhhhHhhhhhHHH------HHHHH----------HHHhCCCeEEEEcCchhhcC
Q 005661 259 ---SGSE-------------------FEEMFVGVGARRV------RDLFS----------AAKKRSPCIIFIDEIDAIGG 300 (685)
Q Consensus 259 ---s~s~-------------------l~~~~~g~~~~~i------r~lF~----------~A~~~~P~ILfIDEID~l~~ 300 (685)
.|.. +...-.|.++.++ ....+ .++ ....||++||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL-- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLL-- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEeccccc--
Confidence 0110 1111112222211 11111 011 12369999999977
Q ss_pred CCCCCchHHHHHHHHHHHHHhh---------c--cccCCCEEEEEecCCcC-cCcccccCCCCcccccccCC-CCHHHHH
Q 005661 301 SRNPKDQQYMKMTLNQLLVELD---------G--FKQNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVVPN-PDVEGRR 367 (685)
Q Consensus 301 ~r~~~~~~~~~~~l~~LL~~ld---------~--~~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~i~~-Pd~~eR~ 367 (685)
..++++.||..+. | +.-..++++|+|+|..+ .|-|.|+. ||...|.+.. .+.++|.
T Consensus 157 ---------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv 225 (423)
T COG1239 157 ---------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERV 225 (423)
T ss_pred ---------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHH
Confidence 2344455555443 2 23345699999999754 57788887 9999998854 5789999
Q ss_pred HHHHHHhhhhccc--------------------------Cccc-----HHHHHhc-----CCCCCHHHHHHHHHHHHHHH
Q 005661 368 QIMESHMSKVLKA--------------------------DDVD-----LMIIARG-----TPGFSGADLANLVNIAALKA 411 (685)
Q Consensus 368 ~ILk~~l~~~~~~--------------------------~~vd-----l~~la~~-----t~G~sgadI~~lv~~A~~~A 411 (685)
+|++..+.-. .. +.+. ...++.. ..| .-+|| -+++.|..+|
T Consensus 226 ~Ii~r~~~f~-~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g-~radi-~~~r~a~a~a 302 (423)
T COG1239 226 EIIRRRLAFE-AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDG-HRADI-VVVRAAKALA 302 (423)
T ss_pred HHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCC-Cchhh-HHHHHHHHHH
Confidence 9988766421 10 0110 0111111 111 11222 3455566777
Q ss_pred HHcCCCccCHHHHHHHHHHHhc
Q 005661 412 AMDGAKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 412 ~~~~~~~It~edl~~A~~~v~~ 433 (685)
+..++..++.+|+++|....+.
T Consensus 303 a~~Gr~~v~~~Di~~a~~l~l~ 324 (423)
T COG1239 303 ALRGRTEVEEEDIREAAELALL 324 (423)
T ss_pred HhcCceeeehhhHHHHHhhhhh
Confidence 7888888888999888776544
No 207
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.92 E-value=2.7e-08 Score=113.17 Aligned_cols=195 Identities=19% Similarity=0.269 Sum_probs=129.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc----------CCCEEEeeccchhhh---Hhh-------h------hhHHHHHHHHHH
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSGSEFEEM---FVG-------V------GARRVRDLFSAA 282 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs~s~l~~~---~~g-------~------~~~~ir~lF~~A 282 (685)
.+.+.|-||||||.+++.+-.++ ..+++.+|+-.+.+. |.+ . +...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 58999999999999999998865 357888888766442 221 1 112223333311
Q ss_pred -HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCccccc-C-CCCcc-ccccc
Q 005661 283 -KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALV-R-PGRFD-RHIVV 358 (685)
Q Consensus 283 -~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLl-R-pgRFd-~~I~i 358 (685)
-...+|||+|||+|.|..+ .+.+++.++.+-- .++.+++||+..|..+....-|. | ..|++ +.|.|
T Consensus 504 k~~~~~~VvLiDElD~Lvtr--------~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F 573 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR--------SQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICF 573 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc--------cHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhccceeeec
Confidence 1345799999999999754 3566777765533 35677888888886654333332 1 12544 36789
Q ss_pred CCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHcCC-------CccCHHHHHHHHH
Q 005661 359 PNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSG--ADLANLVNIAALKAAMDGA-------KAVTMADLEYAKD 429 (685)
Q Consensus 359 ~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sg--adI~~lv~~A~~~A~~~~~-------~~It~edl~~A~~ 429 (685)
.+++..+..+|+...+.....-..--.+.+|+.-...|| +..-++|++|...|..+.. ..|++.|+.+|+.
T Consensus 574 ~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~ 653 (767)
T KOG1514|consen 574 QPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAIN 653 (767)
T ss_pred CCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHH
Confidence 999999999999999987622221123334444433443 3344889999988876654 4689999999999
Q ss_pred HHhc
Q 005661 430 KIMM 433 (685)
Q Consensus 430 ~v~~ 433 (685)
.++.
T Consensus 654 em~~ 657 (767)
T KOG1514|consen 654 EMLA 657 (767)
T ss_pred HHhh
Confidence 8765
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.90 E-value=1.2e-08 Score=110.28 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=55.5
Q ss_pred CC-cCCCcHHHHHHHHHHHHHhcCchhhhhhCC-CCCCeEEEEcCCCCChHHHHHHHHHhcCC-------CEEEeec---
Q 005661 193 FS-DVKGVDEAKQELEEIVHYLRDPKRFTRLGG-KLPKGVLLVGPPGTGKTMLARAIAGEAGV-------PFFSCSG--- 260 (685)
Q Consensus 193 f~-dV~G~de~k~~L~e~v~~l~~~~~~~~~g~-~~pkgvLL~GPPGTGKT~LAralA~e~~~-------~fi~vs~--- 260 (685)
|+ |+.|+++++.++-+.+. ... .|. ...+.++|+||||+|||+||++|++.++. |++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~---~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFK---SAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHHHHHH---HHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 66 89999999666655444 332 122 23467899999999999999999999976 8999887
Q ss_pred -cchhhhHhhhhhHHHHHHH
Q 005661 261 -SEFEEMFVGVGARRVRDLF 279 (685)
Q Consensus 261 -s~l~~~~~g~~~~~ir~lF 279 (685)
+.+.+..++......|..|
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred CCCCccCCcccCCHHHHHHH
Confidence 5554444444333333333
No 209
>PRK15115 response regulator GlrR; Provisional
Probab=98.90 E-value=1.2e-08 Score=114.23 Aligned_cols=200 Identities=21% Similarity=0.276 Sum_probs=117.4
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhhh
Q 005661 195 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVG 271 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~~ 271 (685)
.++|.+.....+.+.+..+.. ....++|+|++|||||++|+++.... +.||+.++|..+.+....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~-- 202 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE-- 202 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH--
Confidence 567776665554444433221 22369999999999999999998765 579999999987543221
Q ss_pred hHHHHHHHHHH---------------HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--c-------cC
Q 005661 272 ARRVRDLFSAA---------------KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--K-------QN 327 (685)
Q Consensus 272 ~~~ir~lF~~A---------------~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~--~-------~~ 327 (685)
..+|... .....++|||||||.+. ...+ ..|+..++.- . ..
T Consensus 203 ----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~--------~~~q---~~L~~~l~~~~~~~~g~~~~~~ 267 (444)
T PRK15115 203 ----SELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP--------APLQ---VKLLRVLQERKVRPLGSNRDID 267 (444)
T ss_pred ----HHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC--------HHHH---HHHHHHHhhCCEEeCCCCceee
Confidence 1222211 11234699999999884 2233 3333333321 1 11
Q ss_pred CCEEEEEecCCcCcCcccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhcc-----cCcccHH---HH
Q 005661 328 EGIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVLK-----ADDVDLM---II 388 (685)
Q Consensus 328 ~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~i~~Pd~~eR~~----ILk~~l~~~~~-----~~~vdl~---~l 388 (685)
.++.+|++|+.. ++..+. .|+|.. .+.+..|..++|.+ ++++++.+... ...++-+ .|
T Consensus 268 ~~~rii~~~~~~--l~~~~~-~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (444)
T PRK15115 268 IDVRIISATHRD--LPKAMA-RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRL 344 (444)
T ss_pred eeEEEEEeCCCC--HHHHHH-cCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 267899998853 333333 245532 34667788888865 55666654321 1124433 34
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 389 ARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 389 a~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
..+...-+.++|+++++.|+.. .....|+.+|+...
T Consensus 345 ~~~~WpgNvreL~~~i~~~~~~---~~~~~i~~~~l~~~ 380 (444)
T PRK15115 345 MTASWPGNVRQLVNVIEQCVAL---TSSPVISDALVEQA 380 (444)
T ss_pred HhCCCCChHHHHHHHHHHHHHh---CCCCccChhhhhhh
Confidence 4444333556777777766544 34567888877543
No 210
>PRK12377 putative replication protein; Provisional
Probab=98.87 E-value=2e-08 Score=104.37 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=65.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhhh--hHHHHHHHHHHHhCCCeEEEEcCchhhcCCC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVG--ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSR 302 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~~--~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r 302 (685)
.+++|+||||||||+||.++++++ +..+++++..++.......- ......+++.. ....+|+|||++....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~-- 177 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE-- 177 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC--
Confidence 589999999999999999999987 67788888877766432211 01122333333 3457999999976532
Q ss_pred CCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 303 NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 303 ~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
..+...++.+++.. .......+|.|||..
T Consensus 178 ----s~~~~~~l~~ii~~----R~~~~~ptiitSNl~ 206 (248)
T PRK12377 178 ----TKNEQVVLNQIIDR----RTASMRSVGMLTNLN 206 (248)
T ss_pred ----CHHHHHHHHHHHHH----HHhcCCCEEEEcCCC
Confidence 23345566666543 222334567789964
No 211
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.86 E-value=1.5e-08 Score=114.14 Aligned_cols=206 Identities=20% Similarity=0.271 Sum_probs=120.3
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhh
Q 005661 193 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVG 269 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g 269 (685)
+.+++|.++...++.+.+..+... +..+++.|++||||+++|+++.... +.||+.++|..+.+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRS----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCc----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 456889888877777666543322 3479999999999999999998764 579999999987543221
Q ss_pred hhhHHHHHHHHH---------------HHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc------ccCC
Q 005661 270 VGARRVRDLFSA---------------AKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF------KQNE 328 (685)
Q Consensus 270 ~~~~~ir~lF~~---------------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~------~~~~ 328 (685)
..+|.. ......++|||||||.+. ...+..+..++..-... ....
T Consensus 203 ------~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~--------~~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 203 ------SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP--------LDAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred ------HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC--------HHHHHHHHHHHhcCcEEECCCCceeee
Confidence 111110 112235799999999884 22333344443321100 1122
Q ss_pred CEEEEEecCCcC-------cCcccccCCCCcccccccCCCCHHHH----HHHHHHHhhhhccc-----CcccHHHHHhcC
Q 005661 329 GIIVIAATNFPE-------SLDKALVRPGRFDRHIVVPNPDVEGR----RQIMESHMSKVLKA-----DDVDLMIIARGT 392 (685)
Q Consensus 329 ~ViVIaaTN~p~-------~LD~aLlRpgRFd~~I~i~~Pd~~eR----~~ILk~~l~~~~~~-----~~vdl~~la~~t 392 (685)
++.||++|+..- .+.+.|.. |+. .+.+..|+.++| ..++++++...... ..++.+.+....
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLK 345 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 577888887541 12222222 332 345555655544 44666666544221 234444443333
Q ss_pred CCC---CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 393 PGF---SGADLANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 393 ~G~---sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
..- +-++|+++++.+...+ ....|+.+|+...+
T Consensus 346 ~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 346 QLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 323 3477777777776554 45678888886554
No 212
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.5e-09 Score=111.41 Aligned_cols=95 Identities=33% Similarity=0.547 Sum_probs=70.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh-Hhhhhh-HHHHHHHHHHH----hCCCeEEEEcCchhhcCCC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGA-RRVRDLFSAAK----KRSPCIIFIDEIDAIGGSR 302 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~-~~g~~~-~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r 302 (685)
+|||.||+|+|||+||+.||+-+++||..++|..+... |+|+.. ..+..++..|. +.+..|+||||+|.|..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 59999999999999999999999999999999998765 888754 44566666552 3356799999999998543
Q ss_pred CCCch---HHHHHHHHHHHHHhhc
Q 005661 303 NPKDQ---QYMKMTLNQLLVELDG 323 (685)
Q Consensus 303 ~~~~~---~~~~~~l~~LL~~ld~ 323 (685)
.+... -.-+.+...||..++|
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred ccccccccccchhHHHHHHHHhcc
Confidence 22110 0123345566666665
No 213
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.85 E-value=2e-08 Score=97.78 Aligned_cols=133 Identities=26% Similarity=0.389 Sum_probs=88.7
Q ss_pred CcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC-----------------------C
Q 005661 198 GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-----------------------P 254 (685)
Q Consensus 198 G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~-----------------------~ 254 (685)
|++++.+.|.+.+. ..+.|..+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 67788888877765 3567888999999999999999999987732 1
Q ss_pred EEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCE
Q 005661 255 FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGI 330 (685)
Q Consensus 255 fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~V 330 (685)
++.++...... ......++.+...+. ....-|++|||+|.+ .....|.||..|+ .+..++
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LE--epp~~~ 133 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLE--EPPENT 133 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHH--STTTTE
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhc--CCCCCE
Confidence 22222221100 112345666655542 234579999999988 4567788999998 456789
Q ss_pred EEEEecCCcCcCcccccCCCCcccccccCC
Q 005661 331 IVIAATNFPESLDKALVRPGRFDRHIVVPN 360 (685)
Q Consensus 331 iVIaaTN~p~~LD~aLlRpgRFd~~I~i~~ 360 (685)
++|.+|+.++.|-+.+++ |.- .+.|++
T Consensus 134 ~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 134 YFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp EEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred EEEEEECChHHChHHHHh--hce-EEecCC
Confidence 999999999999999998 763 455544
No 214
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.6e-08 Score=109.58 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=97.7
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCE-------------------------EEeeccchh-------------
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF-------------------------FSCSGSEFE------------- 264 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~f-------------------------i~vs~s~l~------------- 264 (685)
..+.|.++||+||+|+||+++|+++|+.+.+.. ..+......
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 457889999999999999999999998774421 111110000
Q ss_pred ---hh------H-hhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCE
Q 005661 265 ---EM------F-VGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGI 330 (685)
Q Consensus 265 ---~~------~-~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~V 330 (685)
.. + ...+...+|++.+.+.. ...-|++||++|.+ ....-|.||..|+ ++..++
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t 163 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE--EPPPGT 163 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCcCc
Confidence 00 0 01123456666655432 23469999999988 3456789999998 577889
Q ss_pred EEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHH
Q 005661 331 IVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESH 373 (685)
Q Consensus 331 iVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~ 373 (685)
++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 164 ~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 164 VFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 999999999999999998 88 58899999999988888664
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.81 E-value=3.6e-08 Score=102.13 Aligned_cols=132 Identities=20% Similarity=0.284 Sum_probs=82.4
Q ss_pred CCCCCCcCC-CcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchh
Q 005661 189 SNTKFSDVK-GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 264 (685)
Q Consensus 189 ~~~~f~dV~-G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~ 264 (685)
.+.+|++.. +.+.++..+..+..+..+.. ....+++|+|+||||||+|+.+++.++ +..++.++..++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 355787764 33444444444444433211 112489999999999999999999987 7788888888877
Q ss_pred hhHhhhh---hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 265 EMFVGVG---ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 265 ~~~~g~~---~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
..+.... ......+++... ...+|+|||++... ...+....+.+++.. .......+|.+||..
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~------~s~~~~~~l~~Ii~~----Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT------ESRYEKVIINQIVDR----RSSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC------CCHHHHHHHHHHHHH----HHhCCCCEEEeCCCC
Confidence 6543321 112234444433 46799999998753 233445566666643 222345677888864
No 216
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=1.9e-07 Score=102.22 Aligned_cols=220 Identities=20% Similarity=0.223 Sum_probs=141.2
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEeeccchhhh--
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEFEEM-- 266 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs~s~l~~~-- 266 (685)
..+.|.+..+..+++++..- +....+..+.+.|-||||||.+..-+-... ....++++|..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h--------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH--------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhh--------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 56889998888888877642 223445679999999999999988765443 224488888864331
Q ss_pred -Hhh-----------hh-hHHHHHHHHH-HHhC-CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEE
Q 005661 267 -FVG-----------VG-ARRVRDLFSA-AKKR-SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGII 331 (685)
Q Consensus 267 -~~g-----------~~-~~~ir~lF~~-A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~Vi 331 (685)
|.+ .+ .......|.. .... .+-++++||+|.|+.+. +.++..+..+ .. ..+..++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~--------~~vLy~lFew-p~-lp~sr~i 291 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS--------QTVLYTLFEW-PK-LPNSRII 291 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc--------cceeeeehhc-cc-CCcceee
Confidence 111 11 1122233332 2222 36899999999997443 2334444322 21 2456799
Q ss_pred EEEecCCcCcCcccccC----CCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc--HHHHHhcCCCCCHHHHH---H
Q 005661 332 VIAATNFPESLDKALVR----PGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD--LMIIARGTPGFSGADLA---N 402 (685)
Q Consensus 332 VIaaTN~p~~LD~aLlR----pgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd--l~~la~~t~G~sgadI~---~ 402 (685)
+|+..|..|.-|-.|-| .+--...+.|++++.++..+||+..+.........+ +..+|+...|.|| |++ .
T Consensus 292 LiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLd 370 (529)
T KOG2227|consen 292 LIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALD 370 (529)
T ss_pred eeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHH
Confidence 99999988876654432 223345679999999999999999998765544433 5567888877765 555 6
Q ss_pred HHHHHHHHHHHcCCC----------------ccCHHHHHHHHHHHh
Q 005661 403 LVNIAALKAAMDGAK----------------AVTMADLEYAKDKIM 432 (685)
Q Consensus 403 lv~~A~~~A~~~~~~----------------~It~edl~~A~~~v~ 432 (685)
+|+.|..++..+.+. .|..+++..++.++.
T Consensus 371 v~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~ 416 (529)
T KOG2227|consen 371 VCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVD 416 (529)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhc
Confidence 677777777654432 244566666666554
No 217
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.77 E-value=4.8e-08 Score=113.58 Aligned_cols=100 Identities=25% Similarity=0.299 Sum_probs=63.8
Q ss_pred CEEEEEecCCc--CcCcccccCCCCcc---cccccCC--C-CHHHHHHHHHHHhhhhcc---cCcccHHHHHhc------
Q 005661 329 GIIVIAATNFP--ESLDKALVRPGRFD---RHIVVPN--P-DVEGRRQIMESHMSKVLK---ADDVDLMIIARG------ 391 (685)
Q Consensus 329 ~ViVIaaTN~p--~~LD~aLlRpgRFd---~~I~i~~--P-d~~eR~~ILk~~l~~~~~---~~~vdl~~la~~------ 391 (685)
++.||+++|+. ..+||.|.. ||. ..+.++. + +.+.+..+++...+.... ...++-+.++..
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57899999875 457888877 774 3344432 2 345555565544433211 223443322111
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 005661 392 TPG------FSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDK 430 (685)
Q Consensus 392 t~G------~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~ 430 (685)
..| +.-++|.+++++|...|..++++.|+.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 111 346899999999999999999999999999988754
No 218
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.77 E-value=2.8e-08 Score=111.13 Aligned_cols=200 Identities=23% Similarity=0.295 Sum_probs=116.7
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhhh
Q 005661 195 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVG 271 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~~ 271 (685)
.++|.+.....+.+.+.++.. ....++++|.+||||+++|+++.... +.||+.++|..+.......
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~- 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAP----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES- 208 (441)
T ss_pred ceEecCHHHHHHHHHHhhccC----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH-
Confidence 467777766666554443322 23479999999999999999997654 5799999999875432211
Q ss_pred hHHHHHHHHH---------------HHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--cc-------C
Q 005661 272 ARRVRDLFSA---------------AKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--KQ-------N 327 (685)
Q Consensus 272 ~~~ir~lF~~---------------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~--~~-------~ 327 (685)
.+|.. .....+++|||||||.+.. ..+ ..|+..++.- .. .
T Consensus 209 -----~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~--------~~q---~~l~~~l~~~~~~~~~~~~~~~ 272 (441)
T PRK10365 209 -----ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP--------MMQ---VRLLRAIQEREVQRVGSNQTIS 272 (441)
T ss_pred -----HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH--------HHH---HHHHHHHccCcEEeCCCCceee
Confidence 11211 1123467999999998842 222 3344444321 11 1
Q ss_pred CCEEEEEecCCcCcCcccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhccc-----CcccHHH---H
Q 005661 328 EGIIVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVLKA-----DDVDLMI---I 388 (685)
Q Consensus 328 ~~ViVIaaTN~p~~LD~aLlRpgRFd~-------~I~i~~Pd~~eR~~----ILk~~l~~~~~~-----~~vdl~~---l 388 (685)
.++.+|++|+.+- ..+..+|+|.. .+.+..|+.++|.+ ++++++.+.... ..++... |
T Consensus 273 ~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 349 (441)
T PRK10365 273 VDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLL 349 (441)
T ss_pred eceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 2567888887632 12234455543 45677788887765 666666553211 1244333 3
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 389 ARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 389 a~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
.....--+.++|+++++.+... .....|+.+|+...
T Consensus 350 ~~~~wpgN~reL~~~~~~~~~~---~~~~~i~~~~l~~~ 385 (441)
T PRK10365 350 IHYDWPGNIRELENAVERAVVL---LTGEYISERELPLA 385 (441)
T ss_pred HhCCCCCHHHHHHHHHHHHHHh---CCCCccchHhCchh
Confidence 4433222446666666665543 34567888877543
No 219
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.75 E-value=1e-08 Score=96.80 Aligned_cols=106 Identities=26% Similarity=0.426 Sum_probs=68.5
Q ss_pred CCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC---CCEEEeeccchhhhHhhhhhH
Q 005661 197 KGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSEFEEMFVGVGAR 273 (685)
Q Consensus 197 ~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~---~~fi~vs~s~l~~~~~g~~~~ 273 (685)
+|.+...+++++-+..+... ...|||+|+|||||+++|++|....+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 46677777777777665433 23799999999999999999998775 477777777644
Q ss_pred HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 274 RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 274 ~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
.++++.+ .+++|||+|+|.+. ...+..+..+ ++... ..++.+|+++..
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~--------~~~Q~~L~~~---l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLS--------PEAQRRLLDL---LKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS---------HHHHHHHHHH---HHHCT-TTTSEEEEEECC
T ss_pred --HHHHHHc---CCCEEEECChHHCC--------HHHHHHHHHH---HHhcC-CCCeEEEEEeCC
Confidence 3344444 55699999999883 2233333344 43322 445566666654
No 220
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.75 E-value=2.7e-09 Score=99.12 Aligned_cols=109 Identities=30% Similarity=0.408 Sum_probs=57.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeecc-chh-hhHhhhhhHHHH-HHHHHHHhCC---CeEEEEcCchhhcCCC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS-EFE-EMFVGVGARRVR-DLFSAAKKRS---PCIIFIDEIDAIGGSR 302 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s-~l~-~~~~g~~~~~ir-~lF~~A~~~~---P~ILfIDEID~l~~~r 302 (685)
+|||.|+||+|||++|+++|+.++..|..+.++ ++. ....|...-... ..|.. ... ..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNra---- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRA---- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccC----
Confidence 489999999999999999999999999988775 332 222332100000 00000 001 159999999976
Q ss_pred CCCchHHHHHHHHHHHHHhhc---------cccCCCEEEEEecCCcC-----cCcccccCCCCc
Q 005661 303 NPKDQQYMKMTLNQLLVELDG---------FKQNEGIIVIAATNFPE-----SLDKALVRPGRF 352 (685)
Q Consensus 303 ~~~~~~~~~~~l~~LL~~ld~---------~~~~~~ViVIaaTN~p~-----~LD~aLlRpgRF 352 (685)
..++.+.||+.|.. +.-..+++||+|-|..+ .|+++++. ||
T Consensus 75 -------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 -------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp --------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 34455556655532 33456799999999776 57777776 76
No 221
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.74 E-value=4.3e-07 Score=94.45 Aligned_cols=99 Identities=21% Similarity=0.193 Sum_probs=67.4
Q ss_pred EEEEecCC------------cCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhcCCCCCH
Q 005661 331 IVIAATNF------------PESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSG 397 (685)
Q Consensus 331 iVIaaTN~------------p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~t~G~sg 397 (685)
++|++||+ |.-++-.|+. |. .+|...+++.++..+||++.+......-+-| ++.|......-|-
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsL 395 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSL 395 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhH
Confidence 66667774 3345555554 44 2567788999999999999987643221111 2334433333344
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005661 398 ADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 398 adI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~ 432 (685)
+--.+|+..|.+.+.++....+..+|+..+.+-.+
T Consensus 396 RYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 396 RYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFL 430 (454)
T ss_pred HHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHh
Confidence 55568999999999999999999999999987554
No 222
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.2e-07 Score=102.08 Aligned_cols=131 Identities=15% Similarity=0.268 Sum_probs=95.9
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC------------------------EEEeeccchhhhHhhhhhHHHHHH
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------------------FFSCSGSEFEEMFVGVGARRVRDL 278 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------------------fi~vs~s~l~~~~~g~~~~~ir~l 278 (685)
..+.|.++||+||+|+||+++|+++|+.+-+. |+.+...+ .+ ..+...+|++
T Consensus 20 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l 95 (325)
T PRK06871 20 QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREI 95 (325)
T ss_pred cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHH
Confidence 35678899999999999999999999877331 11111100 00 1234556766
Q ss_pred HHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCccc
Q 005661 279 FSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDR 354 (685)
Q Consensus 279 F~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~ 354 (685)
-+.+.. ...-|++||++|.+. ....|.||..|+ +++.++++|.+|+.++.|.|.+++ |..
T Consensus 96 ~~~~~~~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC~- 159 (325)
T PRK06871 96 NEKVSQHAQQGGNKVVYIQGAERLT-----------EAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RCQ- 159 (325)
T ss_pred HHHHhhccccCCceEEEEechhhhC-----------HHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hce-
Confidence 555432 334699999999883 456788999988 477788999999999999999988 774
Q ss_pred ccccCCCCHHHHHHHHHHH
Q 005661 355 HIVVPNPDVEGRRQIMESH 373 (685)
Q Consensus 355 ~I~i~~Pd~~eR~~ILk~~ 373 (685)
.+.|++|+.++..+.|...
T Consensus 160 ~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 7899999998888777654
No 223
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.3e-07 Score=101.70 Aligned_cols=134 Identities=21% Similarity=0.294 Sum_probs=94.0
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC---------------------EEEee--ccchhhh-HhhhhhHHHHHH
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---------------------FFSCS--GSEFEEM-FVGVGARRVRDL 278 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~---------------------fi~vs--~s~l~~~-~~g~~~~~ir~l 278 (685)
..+.|..+||+||+|+||+++|.++|+.+-+. |+.+. ...-..+ ....+...+|++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 45778899999999999999999999876331 11110 0000000 001224456776
Q ss_pred HHHHHhC----CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCccc
Q 005661 279 FSAAKKR----SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDR 354 (685)
Q Consensus 279 F~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~ 354 (685)
.+.+... .--|++||++|.+ .....|.||+.|+ ++..++++|.+|+.++.|-|.+++ |+.
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--RCq- 165 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--RCQ- 165 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--hhe-
Confidence 6655332 2369999999988 3456788998888 456678888889999999999998 875
Q ss_pred ccccCCCCHHHHHHHHHH
Q 005661 355 HIVVPNPDVEGRRQIMES 372 (685)
Q Consensus 355 ~I~i~~Pd~~eR~~ILk~ 372 (685)
.+.|++|+.++..+.|..
T Consensus 166 ~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred EeeCCCcCHHHHHHHHHH
Confidence 788999999887777654
No 224
>PRK08181 transposase; Validated
Probab=98.72 E-value=9.1e-08 Score=100.59 Aligned_cols=100 Identities=19% Similarity=0.269 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhh-hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV-GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSR 302 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~-~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r 302 (685)
..+++|+||||||||+||.+++.++ |..+++++..++...+... ........+... ..+.+|+|||++.+...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC-
Confidence 3489999999999999999998755 7788888888877754321 112233444443 34569999999876422
Q ss_pred CCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 303 NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 303 ~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
......+.+++...- .. --+|.|||.+
T Consensus 183 -----~~~~~~Lf~lin~R~---~~--~s~IiTSN~~ 209 (269)
T PRK08181 183 -----QAETSVLFELISARY---ER--RSILITANQP 209 (269)
T ss_pred -----HHHHHHHHHHHHHHH---hC--CCEEEEcCCC
Confidence 233445555555322 11 2577788865
No 225
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=2.4e-07 Score=100.37 Aligned_cols=131 Identities=16% Similarity=0.217 Sum_probs=95.4
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC------------------------EEEeeccchhhhHhhhhhHHHHHH
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------------------FFSCSGSEFEEMFVGVGARRVRDL 278 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------------------fi~vs~s~l~~~~~g~~~~~ir~l 278 (685)
..+.|..+||+||+|+||+++|+++|..+-+. +..+....- . ...+...+|++
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l 96 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREV 96 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHH
Confidence 45778899999999999999999999877331 111111000 0 01223456666
Q ss_pred HHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCccc
Q 005661 279 FSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDR 354 (685)
Q Consensus 279 F~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~ 354 (685)
-+.+. ....-|++||++|.| ....-|.||+.|+ ++..++++|..|+.++.|.|.+++ |..
T Consensus 97 ~~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 97 TEKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred HHHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-
Confidence 55543 234469999999988 3556789999998 467789999999999999999998 876
Q ss_pred ccccCCCCHHHHHHHHHH
Q 005661 355 HIVVPNPDVEGRRQIMES 372 (685)
Q Consensus 355 ~I~i~~Pd~~eR~~ILk~ 372 (685)
.+.|++|+.++..+.|..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 679999998887777654
No 226
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.69 E-value=6.3e-08 Score=103.69 Aligned_cols=102 Identities=26% Similarity=0.339 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhh-hhHHHHHHHHHHHhCCCeEEEEcCchhhcCC
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV-GARRVRDLFSAAKKRSPCIIFIDEIDAIGGS 301 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~-~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~ 301 (685)
.++|++|+||+|||||+|+.|+|+++ |.++..++..+|...+... ....+...++..+ ...+|+||||..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 45799999999999999999999988 7888888887776553321 1112334444443 45699999997542
Q ss_pred CCCCchHHHH-HHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 302 RNPKDQQYMK-MTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 302 r~~~~~~~~~-~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
...+.. .++..++.. +...+..+|.|||.+
T Consensus 231 ----~s~~~~~~ll~~Il~~----R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 ----MSSWVRDEVLGVILQY----RMQEELPTFFTSNFD 261 (306)
T ss_pred ----ccHHHHHHHHHHHHHH----HHHCCCeEEEECCCC
Confidence 122332 344444432 112455778899964
No 227
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.68 E-value=8.3e-08 Score=110.75 Aligned_cols=189 Identities=18% Similarity=0.190 Sum_probs=126.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC--CCEEEeeccchhhhHhhhhh--HHH--------HHHHHHHHhCCCeEEEEcCc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSEFEEMFVGVGA--RRV--------RDLFSAAKKRSPCIIFIDEI 295 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~--~~fi~vs~s~l~~~~~g~~~--~~i--------r~lF~~A~~~~P~ILfIDEI 295 (685)
.||||.|++|||||+++++++.-+. .||+.+..+.-.+..+|... ..+ ..++..| ...||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 4899999999999999999999875 59988877766665665431 111 1222222 2359999999
Q ss_pred hhhcCCCCCCchHHHHHHHHHHHHHhhc-----------cccCCCEEEEEecCCc---CcCcccccCCCCcccccccCCC
Q 005661 296 DAIGGSRNPKDQQYMKMTLNQLLVELDG-----------FKQNEGIIVIAATNFP---ESLDKALVRPGRFDRHIVVPNP 361 (685)
Q Consensus 296 D~l~~~r~~~~~~~~~~~l~~LL~~ld~-----------~~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd~~I~i~~P 361 (685)
..+ ...++..|+..|+. +....++++|++.|.. ..|.++++. ||+.+|.++.|
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 977 34567777777753 1223568888874432 347888887 99999999988
Q ss_pred CHHHHH-------HHHHHH--hhhhcccCcccHHHHHhc--CCCC-CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 005661 362 DVEGRR-------QIMESH--MSKVLKADDVDLMIIARG--TPGF-SGADLANLVNIAALKAAMDGAKAVTMADLEYAKD 429 (685)
Q Consensus 362 d~~eR~-------~ILk~~--l~~~~~~~~vdl~~la~~--t~G~-sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~ 429 (685)
+..+.. +|.... +.+.... +-.+..++.. ..|. |.+--..+++-|..+|..++++.|+.+|+.+|+.
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 765432 233222 2221111 1112222221 2354 6777778899999999999999999999999988
Q ss_pred HHhc
Q 005661 430 KIMM 433 (685)
Q Consensus 430 ~v~~ 433 (685)
-++.
T Consensus 249 lvL~ 252 (584)
T PRK13406 249 LVLA 252 (584)
T ss_pred HHHH
Confidence 7764
No 228
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.66 E-value=1.2e-07 Score=99.90 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=85.6
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC-C--EEEeeccchhh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-P--FFSCSGSEFEE 265 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~-~--fi~vs~s~l~~ 265 (685)
+++.|.++.=.-.--.....+++.+-.. .+.+||+||+|||||++++.+-..+.- . ...++++....
T Consensus 5 ~~~~~~~~~VpT~dt~r~~~ll~~l~~~----------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt 74 (272)
T PF12775_consen 5 PEMPFNEILVPTVDTVRYSYLLDLLLSN----------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT 74 (272)
T ss_dssp --------T---HHHHHHHHHHHHHHHC----------TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH
T ss_pred cccccceEEeCcHHHHHHHHHHHHHHHc----------CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC
Confidence 3455666655444334445555553221 237999999999999999988766532 2 23344443221
Q ss_pred hHhhhhhHHHHHHHHHH-----------HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc--------c
Q 005661 266 MFVGVGARRVRDLFSAA-----------KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK--------Q 326 (685)
Q Consensus 266 ~~~g~~~~~ir~lF~~A-----------~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~--------~ 326 (685)
...++.+.+.. ...+.+|+||||+..-... ..+.......+.+++.. .|+- .
T Consensus 75 ------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d--~ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~ 145 (272)
T PF12775_consen 75 ------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPD--KYGTQPPIELLRQLIDY-GGFYDRKKLEWKS 145 (272)
T ss_dssp ------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S-----TTS--HHHHHHHHHHHC-SEEECTTTTEEEE
T ss_pred ------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCC--CCCCcCHHHHHHHHHHh-cCcccCCCcEEEE
Confidence 12222222111 1234479999999854322 12222233444444432 2322 2
Q ss_pred CCCEEEEEecCCcC---cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhh
Q 005661 327 NEGIIVIAATNFPE---SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV 377 (685)
Q Consensus 327 ~~~ViVIaaTN~p~---~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~ 377 (685)
-.++.+|+++|.+. .+++.++| .| .++.++.|+.+....|+..++...
T Consensus 146 i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 146 IEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp ECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHHHH
T ss_pred EeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHhhh
Confidence 24688899988543 46777776 55 378999999999999888887654
No 229
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=3.4e-07 Score=98.41 Aligned_cols=131 Identities=19% Similarity=0.279 Sum_probs=94.3
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-----------------------EEEeeccchhhhHhhhhhHHHHHHH
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-----------------------FFSCSGSEFEEMFVGVGARRVRDLF 279 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-----------------------fi~vs~s~l~~~~~g~~~~~ir~lF 279 (685)
..+.|.++||+||.|+||+++|+++|+.+-+. |+.+.... ..+ ..+...+|++-
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~ 97 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCN 97 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHH
Confidence 46778899999999999999999999876321 22221110 000 01234556655
Q ss_pred HHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccc
Q 005661 280 SAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRH 355 (685)
Q Consensus 280 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~ 355 (685)
+.+.. ...-|++||++|.+. ...-|.||+.++ ++..++++|..|+.++.|-|.+++ |.. .
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq-~ 161 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RCQ-Q 161 (319)
T ss_pred HHHhhCcccCCceEEEecchhhhC-----------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cce-e
Confidence 44432 234699999999883 456788999888 466789999999999999999998 875 7
Q ss_pred cccCCCCHHHHHHHHHH
Q 005661 356 IVVPNPDVEGRRQIMES 372 (685)
Q Consensus 356 I~i~~Pd~~eR~~ILk~ 372 (685)
+.|++|+.++..+.|..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 89999999888777654
No 230
>PRK06526 transposase; Provisional
Probab=98.65 E-value=9e-08 Score=99.90 Aligned_cols=101 Identities=23% Similarity=0.298 Sum_probs=63.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhh-hhHHHHHHHHHHHhCCCeEEEEcCchhhcCC
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV-GARRVRDLFSAAKKRSPCIIFIDEIDAIGGS 301 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~-~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~ 301 (685)
.+.+++|+||||||||+||.+|+.++ |..++.++..++....... ........+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 34589999999999999999998875 6777777777766553221 111222223222 3467999999997632
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 302 RNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 302 r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
.......+.+++.... . . + .+|.+||.+
T Consensus 174 -----~~~~~~~L~~li~~r~--~-~-~-s~IitSn~~ 201 (254)
T PRK06526 174 -----EPEAANLFFQLVSSRY--E-R-A-SLIVTSNKP 201 (254)
T ss_pred -----CHHHHHHHHHHHHHHH--h-c-C-CEEEEcCCC
Confidence 1233345555554322 1 1 2 377788865
No 231
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.64 E-value=1.2e-07 Score=100.46 Aligned_cols=210 Identities=22% Similarity=0.293 Sum_probs=124.3
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 265 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~ 265 (685)
....|+.+++.+...+.+.+-...+.- ....+||.|..||||-++||+..... ..||+.+||..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~Am----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAM----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhc----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 445689999988876665544332211 12259999999999999999987655 67999999998876
Q ss_pred hH-----hhhh--hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHh-hc-ccc-------CCC
Q 005661 266 MF-----VGVG--ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVEL-DG-FKQ-------NEG 329 (685)
Q Consensus 266 ~~-----~g~~--~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~l-d~-~~~-------~~~ 329 (685)
.. .|.. ..--..+|+.|... .+|+|||..+. ...+ ..||..+ || |+. .-+
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmS--------p~lQ---aKLLRFL~DGtFRRVGee~Ev~vd 334 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMS--------PRLQ---AKLLRFLNDGTFRRVGEDHEVHVD 334 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcC--------HHHH---HHHHHHhcCCceeecCCcceEEEE
Confidence 42 2211 23345677777544 89999999874 2233 3444444 33 222 125
Q ss_pred EEEEEecCCc--CcCcccccCCCCccc--ccccCCCCHHHHHH----HHHHHhhhhc-----ccCcccHHHHHhcCCCCC
Q 005661 330 IIVIAATNFP--ESLDKALVRPGRFDR--HIVVPNPDVEGRRQ----IMESHMSKVL-----KADDVDLMIIARGTPGFS 396 (685)
Q Consensus 330 ViVIaaTN~p--~~LD~aLlRpgRFd~--~I~i~~Pd~~eR~~----ILk~~l~~~~-----~~~~vdl~~la~~t~G~s 396 (685)
|.||++|..+ +..+....|..-|.| ++.+..|..++|.+ +.++++.+.. ..+.++-+.+...+..-+
T Consensus 335 VRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~W 414 (511)
T COG3283 335 VRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAW 414 (511)
T ss_pred EEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCC
Confidence 9999999764 223333333332222 56778888888765 4445544331 123344333333333334
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005661 397 ---GADLANLVNIAALKAAMDGAKAVTMADLE 425 (685)
Q Consensus 397 ---gadI~~lv~~A~~~A~~~~~~~It~edl~ 425 (685)
.+++.|++-+|+... ....++.+|+.
T Consensus 415 pGNVRqL~N~iyRA~s~~---Eg~~l~i~~i~ 443 (511)
T COG3283 415 PGNVRQLKNAIYRALTLL---EGYELRIEDIL 443 (511)
T ss_pred CccHHHHHHHHHHHHHHh---ccCccchhhcc
Confidence 455556555554433 44567777764
No 232
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.63 E-value=2.9e-07 Score=96.76 Aligned_cols=188 Identities=19% Similarity=0.197 Sum_probs=117.6
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCE------EEeecc
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF------FSCSGS 261 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~f------i~vs~s 261 (685)
..+-.+.||++.++....+.++.+. ...| +.|+|||||||||....+.|..+-.|. ..++.+
T Consensus 35 yrP~~l~dv~~~~ei~st~~~~~~~-----------~~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 35 YRPPFLGIVIKQEPIWSTENRYSGM-----------PGLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CCCchhhhHhcCCchhhHHHHhccC-----------CCCC-cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 4556789999999987777765331 2334 899999999999999999999887651 111222
Q ss_pred chhhhHhhhh-hHHHHHHHHHHHh-------CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEE
Q 005661 262 EFEEMFVGVG-ARRVRDLFSAAKK-------RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVI 333 (685)
Q Consensus 262 ~l~~~~~g~~-~~~ir~lF~~A~~-------~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVI 333 (685)
+- .|.. .+.-...|..++. ..+..+++||.|++. ....|.|-+.++.+.. ++.++
T Consensus 103 d~----rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----------~~AQnALRRviek~t~--n~rF~ 165 (360)
T KOG0990|consen 103 DD----RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----------RDAQNALRRVIEKYTA--NTRFA 165 (360)
T ss_pred Cc----cCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh-----------HHHHHHHHHHHHHhcc--ceEEE
Confidence 11 1111 1122234555542 256799999999984 3334444445554444 45555
Q ss_pred EecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005661 334 AATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTPGFSGADLANLVNIAALKA 411 (685)
Q Consensus 334 aaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~t~G~sgadI~~lv~~A~~~A 411 (685)
..+|.+..+.|++++ ||. .+.+.+-+...-..++.++++.....-..+ ...+++. +-+|++..+|.....+
T Consensus 166 ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s~gDmr~a~n~Lqs~~ 237 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----SVGDMRVALNYLQSIL 237 (360)
T ss_pred EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----hHHHHHHHHHHHHHHH
Confidence 778999999999987 775 456767777777778888876543322211 2234443 4457776666544433
No 233
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.60 E-value=8.3e-07 Score=103.04 Aligned_cols=313 Identities=21% Similarity=0.269 Sum_probs=163.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEee-ccchhhhHhhhhhHHHHHHH-----HHHH---hCCCeEEEEcCchhh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS-GSEFEEMFVGVGARRVRDLF-----SAAK---KRSPCIIFIDEIDAI 298 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs-~s~l~~~~~g~~~~~ir~lF-----~~A~---~~~P~ILfIDEID~l 298 (685)
-+|||.|.||||||.|.+.+++-+...++..- ++.- +|.++..+++-+ -.+- ...++|.+|||+|.+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 36999999999999999999998866544321 1111 122222222211 1111 134679999999987
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEEEEEecCCcC-------------cCcccccCCCCccc
Q 005661 299 GGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPE-------------SLDKALVRPGRFDR 354 (685)
Q Consensus 299 ~~~r~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRFd~ 354 (685)
- .... ..+...|+.. .-+...-|++|+|... .|++.|++ |||.
T Consensus 396 ~--------~~dr---~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDL 462 (682)
T COG1241 396 N--------EEDR---VAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDL 462 (682)
T ss_pred C--------hHHH---HHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCe
Confidence 3 1122 2333333321 1123467888998654 46788998 9997
Q ss_pred cccc-CCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 005661 355 HIVV-PNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 355 ~I~i-~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~ 433 (685)
.+.+ +.||.+.-..|.++.+........-+...... .++....+ .++++.-..+|.+
T Consensus 463 ifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~-~~~~~~~~-~~~lrkYI~YAR~-------------------- 520 (682)
T COG1241 463 IFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDG-VDEVEERD-FELLRKYISYARK-------------------- 520 (682)
T ss_pred eEEecCCCCccchHHHHHHHHHHHhcccccccccccc-ccccccCc-HHHHHHHHHHHhc--------------------
Confidence 7654 67887766777777665543221111100000 00000000 1112222222211
Q ss_pred ccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCccceEEecCCCCcccccHHHHHHHHHHhhchHh
Q 005661 434 GSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLARLDVCMGGRV 513 (685)
Q Consensus 434 g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~v~lgGra 513 (685)
...+.++++.++.+ -+..+.+. ..... .. ....+..|..||++-|... .|
T Consensus 521 ---~v~P~lt~ea~e~l-----~~~Yv~~R---------------k~~~~--~~--~~~~~piT~RqLEsiiRLa---eA 570 (682)
T COG1241 521 ---NVTPVLTEEAREEL-----EDYYVEMR---------------KKSAL--VE--EKRTIPITARQLESIIRLA---EA 570 (682)
T ss_pred ---cCCcccCHHHHHHH-----HHHHHHhh---------------hcccc--cc--ccCcccccHHHHHHHHHHH---HH
Confidence 11234444433322 12222211 11111 00 1123457888999999877 55
Q ss_pred hhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005661 514 AEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDNGKSMSTETRLLIEKEVRNFLDRAYNNAKTIL 593 (685)
Q Consensus 514 AEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~~~~~s~~~~~~id~eV~~ll~~a~~~a~~iL 593 (685)
-.++-+.+ -++ ..|...|-+|......+.++.+.-|-+..+....+.+.+.. .....+..++++ +.
T Consensus 571 ~Ak~rLS~-~V~---~eD~~eAi~lv~~~l~~v~~dp~~g~~d~~~~~~~~~~~~~---~~~~~~~~~i~e-------~~ 636 (682)
T COG1241 571 HAKMRLSD-VVE---EEDVDEAIRLVDFSLKTVAVDPEKGKIDIDIIEPGKSKSKR---DKIEKVLDIIKE-------LV 636 (682)
T ss_pred HHhhhccC-CCC---HHHHHHHHHHHHHHHHHhhcCccCCceehhhhccCCcchhh---hhHHHHHHHHHH-------Hh
Confidence 56666664 344 79999999999999999999988888876543333333321 112222232221 12
Q ss_pred HHhHHHHHHHHHHHHHccCCCHHHHHHHHHhhh
Q 005661 594 TMHSKELHALANALLEHETLSGSQIKALLAQVN 626 (685)
Q Consensus 594 ~~~~~~L~~lA~~Lle~etL~~~ei~~il~~~~ 626 (685)
..+...++ +..-+.+-++..++++++....
T Consensus 637 ~~~~~~~~---~~~~~~~g~~~~~~e~~l~~l~ 666 (682)
T COG1241 637 ERSEDPVE---EIIEEAEGISEKEVEEALEKLK 666 (682)
T ss_pred hcccchHH---HHHHHHcCCCHHHHHHHHHHHH
Confidence 22222222 2222222788888888887654
No 234
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.57 E-value=1.1e-07 Score=107.64 Aligned_cols=183 Identities=27% Similarity=0.357 Sum_probs=108.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc--CCCEEEeeccchhhhHhhh-----hh--------HHHHHHHHHHHhCCCeEEEEc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA--GVPFFSCSGSEFEEMFVGV-----GA--------RRVRDLFSAAKKRSPCIIFID 293 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~--~~~fi~vs~s~l~~~~~g~-----~~--------~~ir~lF~~A~~~~P~ILfID 293 (685)
.+|+.|.|||||-.++|++.... ..||+.+||..+.+...+. .. +-.+..++.|. ...+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccHHH
Confidence 59999999999999999997655 5799999998776543221 11 11222222222 2599999
Q ss_pred CchhhcCCCCCCchHHHHHHHHHHHHH-----hhccccCCCEEEEEecCCcCcCcccccCCCCccccc-------ccCCC
Q 005661 294 EIDAIGGSRNPKDQQYMKMTLNQLLVE-----LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHI-------VVPNP 361 (685)
Q Consensus 294 EID~l~~~r~~~~~~~~~~~l~~LL~~-----ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I-------~i~~P 361 (685)
||..|. -.++..+-..|.+ +.+-...-.|.||+||+++= ..|.+.|||-+-+ .|.+|
T Consensus 415 eIgd~p--------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP 483 (606)
T COG3284 415 EIGDMP--------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVITLP 483 (606)
T ss_pred Hhhhch--------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeeeccC
Confidence 999873 2234334444433 22223333589999999741 4566778886643 55668
Q ss_pred CHHHHHH---HHHHHhhhhcc-cCcccHHHHHhcCCCCCH---HHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 362 DVEGRRQ---IMESHMSKVLK-ADDVDLMIIARGTPGFSG---ADLANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 362 d~~eR~~---ILk~~l~~~~~-~~~vdl~~la~~t~G~sg---adI~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
..++|.+ .|.+++.+... .-.++-+.++.....-++ ++|.|++..++ +..+...|...|+...+
T Consensus 484 ~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~---~l~~~g~~~~~dlp~~l 554 (606)
T COG3284 484 PLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLA---ALSDGGRIRVSDLPPEL 554 (606)
T ss_pred chhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHH---HcCCCCeeEcccCCHHH
Confidence 8887766 44444443322 234444445444443444 45555555444 44454556555554443
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.57 E-value=3.5e-07 Score=98.86 Aligned_cols=100 Identities=22% Similarity=0.332 Sum_probs=63.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhhh---hHHHHHHHHHHHhCCCeEEEEcCchhhcCC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVG---ARRVRDLFSAAKKRSPCIIFIDEIDAIGGS 301 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~~---~~~ir~lF~~A~~~~P~ILfIDEID~l~~~ 301 (685)
.+++|+||||||||+|+.++|+++ |..+++++..++...+.... .......++... ...+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC-
Confidence 689999999999999999999987 77888998888766543211 011112233333 346999999986532
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 302 RNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 302 r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
..+....+..+++..- ..+-.+|.|||.+
T Consensus 261 -----t~~~~~~Lf~iin~R~----~~~k~tIiTSNl~ 289 (329)
T PRK06835 261 -----TEFSKSELFNLINKRL----LRQKKMIISTNLS 289 (329)
T ss_pred -----CHHHHHHHHHHHHHHH----HCCCCEEEECCCC
Confidence 2333444445544321 1223567788853
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=4.4e-07 Score=98.03 Aligned_cols=133 Identities=19% Similarity=0.289 Sum_probs=91.2
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCC-------------------------CEEEeeccch---hhh-HhhhhhHH
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------------------------PFFSCSGSEF---EEM-FVGVGARR 274 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~-------------------------~fi~vs~s~l---~~~-~~g~~~~~ 274 (685)
.+.|.++||+||+|+|||++|+.+|+.+.+ .|+.++...- ..+ ....+...
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 478889999999999999999999997642 1233322110 000 00123456
Q ss_pred HHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCC
Q 005661 275 VRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPG 350 (685)
Q Consensus 275 ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpg 350 (685)
+|++.+.+.. ....|++||+++.+- ....+.++..++... .++.+|.+|+.++.+.+.+.+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S-- 162 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS-- 162 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--
Confidence 7777766643 234699999999882 344566777676543 456777788889999998887
Q ss_pred CcccccccCCCCHHHHHHHHHH
Q 005661 351 RFDRHIVVPNPDVEGRRQIMES 372 (685)
Q Consensus 351 RFd~~I~i~~Pd~~eR~~ILk~ 372 (685)
|+ ..+.|++|+.++..+.|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 66 4789999999887777754
No 237
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.54 E-value=6.2e-07 Score=90.28 Aligned_cols=159 Identities=25% Similarity=0.338 Sum_probs=82.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCC---CEEEeec-cchhh----hH-------------h-----------------
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGV---PFFSCSG-SEFEE----MF-------------V----------------- 268 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~---~fi~vs~-s~l~~----~~-------------~----------------- 268 (685)
...++|+||.|+|||+|++.+.....- ..++++. ..... .+ .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 347999999999999999999998832 2222221 11100 00 0
Q ss_pred hhhhHHHHHHHHHHHhC-CCeEEEEcCchhhc-CCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc---
Q 005661 269 GVGARRVRDLFSAAKKR-SPCIIFIDEIDAIG-GSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD--- 343 (685)
Q Consensus 269 g~~~~~ir~lF~~A~~~-~P~ILfIDEID~l~-~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD--- 343 (685)
......+..+++..... ...||+|||++.+. ... . ....+..|...++......++.+|.+........
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~ 173 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--E----DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFL 173 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--T----THHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--c----hHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhh
Confidence 01223455666665544 34899999999997 211 1 1223334444444433345554444443322111
Q ss_pred ---ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc--cCcccHHHHHhcCCC
Q 005661 344 ---KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK--ADDVDLMIIARGTPG 394 (685)
Q Consensus 344 ---~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~--~~~vdl~~la~~t~G 394 (685)
..+. +|+.. +.+++.+.++..++++..+..... .++.+++.+...+.|
T Consensus 174 ~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 174 DDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGG 226 (234)
T ss_dssp -TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT
T ss_pred cccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCC
Confidence 2222 37776 999999999999999998766511 134456666666655
No 238
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.52 E-value=1.5e-06 Score=99.10 Aligned_cols=205 Identities=16% Similarity=0.201 Sum_probs=114.2
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe-eccchh--
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC-SGSEFE-- 264 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v-s~s~l~-- 264 (685)
..+.+.+||+-...-.++++.+++... .+....+-+||+||||||||++++.||+++|..+..- +...+.
T Consensus 13 y~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 13 YAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred cCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 456778899888777677776665311 1233344688999999999999999999998766553 222210
Q ss_pred ----hhHhhhh---------hHHHHHH-HHHHHh-----------CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 265 ----EMFVGVG---------ARRVRDL-FSAAKK-----------RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 265 ----~~~~g~~---------~~~ir~l-F~~A~~-----------~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
..|.+.. .....++ +..++. ..+.||+|||+-.++... .......+.+++.
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~~f~~~L~~~l~ 161 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TSRFREALRQYLR 161 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh----HHHHHHHHHHHHH
Confidence 0111110 0111111 111111 246799999998765321 1223333333332
Q ss_pred HhhccccCCCEEEEEe-cC------Cc--------CcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhh-------
Q 005661 320 ELDGFKQNEGIIVIAA-TN------FP--------ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV------- 377 (685)
Q Consensus 320 ~ld~~~~~~~ViVIaa-TN------~p--------~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~------- 377 (685)
. ....++++|.+ ++ .. ..+++.++...++. +|.|.+-...-.++-|+..+...
T Consensus 162 ~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~ 236 (519)
T PF03215_consen 162 S----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKRILKKEARSSSGK 236 (519)
T ss_pred c----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHHHhhhhcCC
Confidence 1 12116666666 11 11 13455555433443 67887777766666666665433
Q ss_pred cccCc-cc-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005661 378 LKADD-VD-LMIIARGTPGFSGADLANLVNIAALKAA 412 (685)
Q Consensus 378 ~~~~~-vd-l~~la~~t~G~sgadI~~lv~~A~~~A~ 412 (685)
...++ .+ ++.|+..+. +||+..++.-...+.
T Consensus 237 ~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 237 NKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred ccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 11111 22 556666554 599999997666665
No 239
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=6.2e-07 Score=83.55 Aligned_cols=120 Identities=23% Similarity=0.223 Sum_probs=71.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC--CCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK 305 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~--~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~ 305 (685)
+.++|+||.|+|||++++.+++... ..++++++.+.......... +...+.......+.+|||||++.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4689999999999999999998876 78888888776543111110 2233322222356899999999772
Q ss_pred chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcc--cccCCCCcccccccCCCCHHH
Q 005661 306 DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK--ALVRPGRFDRHIVVPNPDVEG 365 (685)
Q Consensus 306 ~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~--aLlRpgRFd~~I~i~~Pd~~e 365 (685)
.....+..+... ..++.+|.|+.....+.. .-.-+||.. .+++.+.+..|
T Consensus 75 ---~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ---DWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred ---cHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 234444554431 133444444443333321 112236775 67777777655
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.51 E-value=6.7e-07 Score=93.40 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhhhhH-HHHH-HHHHHHhCCCeEEEEcCchhh
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVGAR-RVRD-LFSAAKKRSPCIIFIDEIDAI 298 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~~~~-~ir~-lF~~A~~~~P~ILfIDEID~l 298 (685)
.+.+++|+||||||||+||-||++++ |.+++.++..++.......-.. .... +.... ....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 35689999999999999999999877 7889999988887653322111 1111 12212 33469999999865
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.50 E-value=1.6e-07 Score=92.89 Aligned_cols=101 Identities=25% Similarity=0.346 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhh-hhHHHHHHHHHHHhCCCeEEEEcCchhhcCC
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV-GARRVRDLFSAAKKRSPCIIFIDEIDAIGGS 301 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~-~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~ 301 (685)
.+.|++|+||||||||+||.+++.++ |.++.+++..++...+... ........++.... ..+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee--
Confidence 35699999999999999999999876 8889999988887664321 11223344444443 4599999997431
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 302 RNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 302 r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
...+....+.+++..-- .+ + .+|.|||..
T Consensus 122 ----~~~~~~~~l~~ii~~R~---~~-~-~tIiTSN~~ 150 (178)
T PF01695_consen 122 ----LSEWEAELLFEIIDERY---ER-K-PTIITSNLS 150 (178)
T ss_dssp ------HHHHHCTHHHHHHHH---HT---EEEEEESS-
T ss_pred ----ecccccccchhhhhHhh---cc-c-CeEeeCCCc
Confidence 12333344455544321 22 2 466699964
No 242
>PRK06921 hypothetical protein; Provisional
Probab=98.49 E-value=1.5e-06 Score=91.30 Aligned_cols=104 Identities=20% Similarity=0.288 Sum_probs=60.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchh-hcCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDA-IGGS 301 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~-l~~~ 301 (685)
..+++|+||||||||+|+.++++++ +..+++++..++...+... .......+... ....+|+|||++. +.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEeccccccCCC
Confidence 4589999999999999999999876 5677888776654432211 11122222222 3457999999953 2121
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 302 RNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 302 r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
+...++....+..+++.-- . .+-.+|.|||.+
T Consensus 194 --e~~t~~~~~~lf~iin~R~---~-~~k~tIitsn~~ 225 (266)
T PRK06921 194 --PRATEWQIEQMYSVLNYRY---L-NHKPILISSELT 225 (266)
T ss_pred --ccCCHHHHHHHHHHHHHHH---H-CCCCEEEECCCC
Confidence 1122333344555554321 1 122356688853
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=98.49 E-value=4.1e-07 Score=95.32 Aligned_cols=101 Identities=25% Similarity=0.335 Sum_probs=63.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhh-hhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVG-VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSR 302 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g-~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r 302 (685)
..+++|+||||||||+|+.+++..+ |..+.++++.++...+.. .....+...|... ...+.+++|||++.+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~~- 179 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPFS- 179 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCCC-
Confidence 4579999999999999999997664 777888887777644322 1112244455443 245679999999865322
Q ss_pred CCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 303 NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 303 ~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
......+.+++.... ... .+|.|||.+
T Consensus 180 -----~~~~~~lf~li~~r~---~~~--s~iiTsn~~ 206 (259)
T PRK09183 180 -----QEEANLFFQVIAKRY---EKG--SMILTSNLP 206 (259)
T ss_pred -----hHHHHHHHHHHHHHH---hcC--cEEEecCCC
Confidence 122233444443322 122 367788864
No 244
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.45 E-value=6.3e-05 Score=85.92 Aligned_cols=136 Identities=26% Similarity=0.349 Sum_probs=79.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHH-----HHHHHHHHH---hCCCeEEEEcCchhhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR-----VRDLFSAAK---KRSPCIIFIDEIDAIG 299 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~-----ir~lF~~A~---~~~P~ILfIDEID~l~ 299 (685)
.+|||+|.||||||.+.+.+++-+..-.+ +++..-. -+|.++.. -+++..+.. ....+|-+|||+|++.
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsS--avGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~ 539 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSS--AVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS 539 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccc--hhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhh
Confidence 46999999999999999999998754332 2221100 01111110 111111110 1234688999999984
Q ss_pred CCCCCCchHHHHHHHHHHHHH------hhcc--ccCCCEEEEEecCCcC-------------cCcccccCCCCccccc-c
Q 005661 300 GSRNPKDQQYMKMTLNQLLVE------LDGF--KQNEGIIVIAATNFPE-------------SLDKALVRPGRFDRHI-V 357 (685)
Q Consensus 300 ~~r~~~~~~~~~~~l~~LL~~------ld~~--~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRFd~~I-~ 357 (685)
. ..+.+|.+.+++ .-|. .-+...-||++.|... .|+|.|++ |||.++ -
T Consensus 540 d--------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIyll 609 (804)
T KOG0478|consen 540 D--------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLL 609 (804)
T ss_pred H--------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEE
Confidence 2 223344444332 1111 2244578899999443 47799999 999766 4
Q ss_pred cCCCCHHHHHHHHHHHhhh
Q 005661 358 VPNPDVEGRRQIMESHMSK 376 (685)
Q Consensus 358 i~~Pd~~eR~~ILk~~l~~ 376 (685)
++.||+..-+.|-.|...-
T Consensus 610 lD~~DE~~Dr~La~HivsL 628 (804)
T KOG0478|consen 610 LDKPDERSDRRLADHIVAL 628 (804)
T ss_pred ecCcchhHHHHHHHHHHHh
Confidence 5888887666666665543
No 245
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.1e-06 Score=104.27 Aligned_cols=128 Identities=31% Similarity=0.390 Sum_probs=91.1
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCC-CCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh---
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGG-KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM--- 266 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~-~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~--- 266 (685)
+.|+|++++...+-+.|..-+.. ++- +++-.+||.||.|+|||-||+++|..+ .-.|+.+++++|.+-
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g-----l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG-----LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc-----cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 46899999998888887753321 011 345569999999999999999999987 457899999976541
Q ss_pred ------HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc---------CCCEE
Q 005661 267 ------FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ---------NEGII 331 (685)
Q Consensus 267 ------~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~---------~~~Vi 331 (685)
|+|. .....+.+..+....+||+|||||.- ....++.|+..+|..+- -.++|
T Consensus 637 igsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 637 IGSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred cCCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 3332 23446666777777799999999954 23455666666665422 24699
Q ss_pred EEEecCCc
Q 005661 332 VIAATNFP 339 (685)
Q Consensus 332 VIaaTN~p 339 (685)
||+|+|.-
T Consensus 704 ~IMTsn~~ 711 (898)
T KOG1051|consen 704 FIMTSNVG 711 (898)
T ss_pred EEEecccc
Confidence 99999963
No 246
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.43 E-value=2.5e-07 Score=100.27 Aligned_cols=219 Identities=22% Similarity=0.237 Sum_probs=113.0
Q ss_pred cCCCcHHHHHHHH-HHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccc-----hhhh--
Q 005661 195 DVKGVDEAKQELE-EIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE-----FEEM-- 266 (685)
Q Consensus 195 dV~G~de~k~~L~-e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~-----l~~~-- 266 (685)
.|.|.+.+|..+. .++........ .....+-.-++||+|.||||||.|.+.+++-....+ ++++.. +...
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 5778888877654 11111000000 000012234799999999999999999877665443 333222 1000
Q ss_pred -HhhhhhHHHH-HHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEEEE
Q 005661 267 -FVGVGARRVR-DLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGIIVI 333 (685)
Q Consensus 267 -~~g~~~~~ir-~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~ViVI 333 (685)
....+...+. ..+-.| ..+|++|||+|.+-. .....|+..|+.- .-+...-|+
T Consensus 103 ~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~-----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svl 168 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKE-----------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVL 168 (331)
T ss_dssp CCGGTSSECEEE-HHHHC---TTSEEEECTTTT--C-----------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEE
T ss_pred cccccceeEEeCCchhcc---cCceeeecccccccc-----------hHHHHHHHHHHcCeeccchhhhcccccchhhhH
Confidence 0000000000 122222 346999999998831 1234444555431 113457899
Q ss_pred EecCCcC-------------cCcccccCCCCccccccc-CCCCHHHHHHHHHHHhhhhcccC------------ccc---
Q 005661 334 AATNFPE-------------SLDKALVRPGRFDRHIVV-PNPDVEGRRQIMESHMSKVLKAD------------DVD--- 384 (685)
Q Consensus 334 aaTN~p~-------------~LD~aLlRpgRFd~~I~i-~~Pd~~eR~~ILk~~l~~~~~~~------------~vd--- 384 (685)
+++|... .+++.|++ |||.++.+ +.||.+.-..|.++.+....... .++
T Consensus 169 aa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (331)
T PF00493_consen 169 AAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDL 246 (331)
T ss_dssp EEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCC
T ss_pred HHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHH
Confidence 9999654 36788888 99987655 77887666666665554321110 111
Q ss_pred ---HHHHHh------------------------------cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 385 ---LMIIAR------------------------------GTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 385 ---l~~la~------------------------------~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
+-..++ .....|.+.|+.+++-|..+|..+-++.|+.+|+..|++-+
T Consensus 247 lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 247 LRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp CHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 001111 11234567888999999999999999999999999998643
No 247
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.39 E-value=2.1e-06 Score=86.40 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=67.9
Q ss_pred CCCCCC--eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-Hhhh----------------------hhHH
Q 005661 223 GGKLPK--GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-FVGV----------------------GARR 274 (685)
Q Consensus 223 g~~~pk--gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-~~g~----------------------~~~~ 274 (685)
++-+|+ -++|+||||+|||+++..++... +.+.++++..++... +... ....
T Consensus 6 ~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 6 GGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 334444 48899999999999999887543 667888887653211 1110 0112
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 275 VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 275 ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
+..+...+.+..|++|+||-|.++.............+.+..++..|..+....++.+|.+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 333444455567899999999998642211221122233444444455554556777777654
No 248
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.34 E-value=8e-06 Score=84.52 Aligned_cols=182 Identities=19% Similarity=0.246 Sum_probs=117.8
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-C--CCEEE--------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-G--VPFFS-------- 257 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-~--~~fi~-------- 257 (685)
.+.+|+.+.+..+....|+.+.. ..+.| ++|+|||+|+||-|.+.++-+++ | ++=..
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~-----------~~d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSS-----------TGDFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhcc-----------cCCCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 45568888999988888876554 12333 69999999999999999998877 2 21111
Q ss_pred ----------eeccchhh---hHhhhh-hHHHHHHHHHHHhCCC---------eEEEEcCchhhcCCCCCCchHHHHHHH
Q 005661 258 ----------CSGSEFEE---MFVGVG-ARRVRDLFSAAKKRSP---------CIIFIDEIDAIGGSRNPKDQQYMKMTL 314 (685)
Q Consensus 258 ----------vs~s~l~~---~~~g~~-~~~ir~lF~~A~~~~P---------~ILfIDEID~l~~~r~~~~~~~~~~~l 314 (685)
++.....+ ...|.. .-.+.++.+......| -+++|-|.|.+. ....
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-----------~dAQ 144 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-----------RDAQ 144 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-----------HHHH
Confidence 11111111 111221 1234555555433222 599999999884 2233
Q ss_pred HHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhcCC
Q 005661 315 NQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARGTP 393 (685)
Q Consensus 315 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~t~ 393 (685)
..|=+.|+.+. +++.+|..+|....+-+++++ |. ..|.+|.|+.++...++...+++....-..+ +..+++.+.
T Consensus 145 ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 145 HALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred HHHHHHHHHHh--cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 44445566444 456788888988888899987 65 3689999999999999999998765543333 345666654
Q ss_pred CCCHHHHHH
Q 005661 394 GFSGADLAN 402 (685)
Q Consensus 394 G~sgadI~~ 402 (685)
++++.
T Consensus 220 ----~nLRr 224 (351)
T KOG2035|consen 220 ----RNLRR 224 (351)
T ss_pred ----ccHHH
Confidence 46663
No 249
>PF05729 NACHT: NACHT domain
Probab=98.31 E-value=5.9e-06 Score=78.78 Aligned_cols=140 Identities=19% Similarity=0.288 Sum_probs=76.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC--------CC-EEEeeccchhhh---------Hh---hhhhHHHHH-HHHHHHhCC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG--------VP-FFSCSGSEFEEM---------FV---GVGARRVRD-LFSAAKKRS 286 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~--------~~-fi~vs~s~l~~~---------~~---g~~~~~ir~-lF~~A~~~~ 286 (685)
-++|+|+||+|||++++.++..+. .+ ++.+++.++... .. ......+.. +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987651 11 233333332221 00 011111222 122334566
Q ss_pred CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc--CcccccCCCCcccccccCCCCHH
Q 005661 287 PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES--LDKALVRPGRFDRHIVVPNPDVE 364 (685)
Q Consensus 287 P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~--LD~aLlRpgRFd~~I~i~~Pd~~ 364 (685)
+.+|+||.+|.+...............+.+++.. ....++.+|.++..... +...+.. . ..+.+++.+.+
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~~~ 153 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFSEE 153 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCCHH
Confidence 7899999999996533221111222333344322 12334555555543222 2222222 1 46788999999
Q ss_pred HHHHHHHHHhhh
Q 005661 365 GRRQIMESHMSK 376 (685)
Q Consensus 365 eR~~ILk~~l~~ 376 (685)
++.++++.+++.
T Consensus 154 ~~~~~~~~~f~~ 165 (166)
T PF05729_consen 154 DIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHhhc
Confidence 999999988764
No 250
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.30 E-value=3.6e-06 Score=92.16 Aligned_cols=141 Identities=23% Similarity=0.274 Sum_probs=80.9
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCC-CEEEeeccchhhhHhhh------hhHHHHHHHHHHHhCCCeEEEEcCch
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV-PFFSCSGSEFEEMFVGV------GARRVRDLFSAAKKRSPCIIFIDEID 296 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~-~fi~vs~s~l~~~~~g~------~~~~ir~lF~~A~~~~P~ILfIDEID 296 (685)
...|+|++||||+|+|||+|.-.+...+.. .-..+....|....-.. ...-+..+-+... ....+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 457999999999999999999999888754 22223333332210000 0111222222221 223499999987
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc-CcCcccccCCCCcccccccCCCCHHHHHHHHHHHhh
Q 005661 297 AIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP-ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMS 375 (685)
Q Consensus 297 ~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p-~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~ 375 (685)
-- +-....++..|+..+- ..++++|+|+|++ +.|-+ +.+.+....| -.++|+.++.
T Consensus 138 V~--------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~-----~gl~r~~Flp------~I~~l~~~~~ 194 (362)
T PF03969_consen 138 VT--------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYK-----NGLQRERFLP------FIDLLKRRCD 194 (362)
T ss_pred cc--------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcC-----CcccHHHHHH------HHHHHHhceE
Confidence 32 1112345555655543 3689999999974 33322 2333222222 2557888887
Q ss_pred hhcccCcccHHHH
Q 005661 376 KVLKADDVDLMII 388 (685)
Q Consensus 376 ~~~~~~~vdl~~l 388 (685)
-..++..+|+...
T Consensus 195 vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 195 VVELDGGVDYRRR 207 (362)
T ss_pred EEEecCCCchhhh
Confidence 7777777787553
No 251
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.28 E-value=2.8e-06 Score=78.42 Aligned_cols=72 Identities=25% Similarity=0.379 Sum_probs=47.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc--------CCCEEEeeccchhh--hHh-------h-------hhhHHHHHHHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA--------GVPFFSCSGSEFEE--MFV-------G-------VGARRVRDLFSAAK 283 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~--------~~~fi~vs~s~l~~--~~~-------g-------~~~~~ir~lF~~A~ 283 (685)
+.++++||||+|||++++.++... ..+++.+++..... .+. + ........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 468999999999999999999987 77888887764331 110 0 11222334444445
Q ss_pred hCCCeEEEEcCchhhc
Q 005661 284 KRSPCIIFIDEIDAIG 299 (685)
Q Consensus 284 ~~~P~ILfIDEID~l~ 299 (685)
.....+|+|||+|.+.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999974
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.27 E-value=5.7e-06 Score=78.28 Aligned_cols=108 Identities=23% Similarity=0.279 Sum_probs=63.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh----------------------hh--hhHHHHHHHHHH
Q 005661 230 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV----------------------GV--GARRVRDLFSAA 282 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~----------------------g~--~~~~ir~lF~~A 282 (685)
++|+||||+|||+++..++... +.++++++......... .. .....+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 56677776653322110 00 011112234455
Q ss_pred HhCCCeEEEEcCchhhcCCCC---CCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc
Q 005661 283 KKRSPCIIFIDEIDAIGGSRN---PKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 341 (685)
Q Consensus 283 ~~~~P~ILfIDEID~l~~~r~---~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 341 (685)
....|.+|+|||+..+..... ..........+..++..+ ...++.+|++++.+..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA----RKGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----hcCCceEEEEEecCCc
Confidence 667889999999998864321 111222334444444333 3346677777765543
No 253
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.25 E-value=2.7e-05 Score=87.14 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=88.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee-cc------------chhhhHhhhhhHHHHHHHHHHH------------
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS-GS------------EFEEMFVGVGARRVRDLFSAAK------------ 283 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs-~s------------~l~~~~~g~~~~~ir~lF~~A~------------ 283 (685)
-+||+||+||||||.++.|++++|+.++.-+ .. .+...+..............+.
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~ 191 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDL 191 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccccc
Confidence 5889999999999999999999998776543 11 1111111111111111222221
Q ss_pred hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEe-cCCcCcCcccccCC------CCccccc
Q 005661 284 KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA-TNFPESLDKALVRP------GRFDRHI 356 (685)
Q Consensus 284 ~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa-TN~p~~LD~aLlRp------gRFd~~I 356 (685)
...|.+|+|||+-..+... ....+.++|..+-...... +++|.| ++.++..++..+.+ .|++ +|
T Consensus 192 ~~~~~liLveDLPn~~~~d-------~~~~f~evL~~y~s~g~~P-lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~I 262 (634)
T KOG1970|consen 192 RTDKKLILVEDLPNQFYRD-------DSETFREVLRLYVSIGRCP-LIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NI 262 (634)
T ss_pred ccCceEEEeeccchhhhhh-------hHHHHHHHHHHHHhcCCCc-EEEEEeccccCCCcchhhhchhhhhhccCcc-eE
Confidence 1246699999997765321 2233344444333222222 333333 23333333222211 1443 56
Q ss_pred ccCCCCHHHHHHHHHHHhhhhccc-C------cccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005661 357 VVPNPDVEGRRQIMESHMSKVLKA-D------DVDLMIIARGTPGFSGADLANLVNIAALKAA 412 (685)
Q Consensus 357 ~i~~Pd~~eR~~ILk~~l~~~~~~-~------~vdl~~la~~t~G~sgadI~~lv~~A~~~A~ 412 (685)
.|.+-...-.++.|+..+...... . ...++.++.. +++||+..++.-.+.+.
T Consensus 263 sFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~----s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 263 SFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG----SGGDIRSAINSLQLSSS 321 (634)
T ss_pred eecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh----cCccHHHHHhHhhhhcc
Confidence 776666665666666555432111 1 1123344443 45699999998777753
No 254
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.22 E-value=4.1e-06 Score=92.36 Aligned_cols=232 Identities=19% Similarity=0.212 Sum_probs=128.2
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHH
Q 005661 195 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR 274 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ 274 (685)
+|-|.+++|+.|.-++-.--+...-..+.++-..+|+|.|.||..||-|.+.+.+-+.+-.+..--.. .-+|.++..
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccchhh
Confidence 67899999998875543311111112223333457999999999999999999998866655542211 113333333
Q ss_pred HHHHHHH-------H-HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCcC----
Q 005661 275 VRDLFSA-------A-KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--KQNEGIIVIAATNFPE---- 340 (685)
Q Consensus 275 ir~lF~~-------A-~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~--~~~~~ViVIaaTN~p~---- 340 (685)
+++-... | --...+|-+|||+|.+........++-+++.--.+- --|+ .-+...-|+++.|...
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIa--KAGI~TtLNAR~sILaAANPayGRYn 497 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIA--KAGINTTLNARTSILAAANPAYGRYN 497 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhh--hhccccchhhhHHhhhhcCccccccC
Confidence 3321110 0 001235889999999853221111111111111110 1111 1234577888888543
Q ss_pred ---------cCcccccCCCCccccccc-CCCCHHHHHHHHHHHh----hhhccc---CcccHHH------HHhcCC----
Q 005661 341 ---------SLDKALVRPGRFDRHIVV-PNPDVEGRRQIMESHM----SKVLKA---DDVDLMI------IARGTP---- 393 (685)
Q Consensus 341 ---------~LD~aLlRpgRFd~~I~i-~~Pd~~eR~~ILk~~l----~~~~~~---~~vdl~~------la~~t~---- 393 (685)
.|+.||++ |||..+-+ +.||.+.-..+.+|.. ...... ..+|.+. +++...
T Consensus 498 prrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp 575 (721)
T KOG0482|consen 498 PRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVP 575 (721)
T ss_pred cccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCC
Confidence 47899998 99976654 7788776665555433 221111 1122211 111111
Q ss_pred -------------------------CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 005661 394 -------------------------GFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 394 -------------------------G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~ 433 (685)
.-|++-|-.+++.+...|..+-.+.|..+|+.+|++-+-+
T Consensus 576 ~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~ 640 (721)
T KOG0482|consen 576 EALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEM 640 (721)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHh
Confidence 2356677777777777777777777888888888775544
No 255
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.22 E-value=3.1e-06 Score=95.56 Aligned_cols=221 Identities=19% Similarity=0.226 Sum_probs=128.2
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCchhhhhhC--CCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhh
Q 005661 193 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLG--GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGV 270 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g--~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~ 270 (685)
|-.|.|.+.+|.-+.=. .+-...+...-| .+-.-+|+|+|.|||||+-+.+++++-+.+.++.. +..-.. .|.
T Consensus 344 ~PsIyGhe~VK~GilL~--LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-GkaSSa--AGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLS--LFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKASSA--AGL 418 (764)
T ss_pred CccccchHHHHhhHHHH--HhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec-Cccccc--ccc
Confidence 66788999888876522 222222222211 22233699999999999999999998886654433 221100 111
Q ss_pred hhHHHHH--HHH---HHH---hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEE
Q 005661 271 GARRVRD--LFS---AAK---KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGII 331 (685)
Q Consensus 271 ~~~~ir~--lF~---~A~---~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~Vi 331 (685)
++..+++ -++ .|. -...+|-+|||+|.+..+. + ..++..|+.- .-+.+.-
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~d--------q---vAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKD--------Q---VAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChHh--------H---HHHHHHHHhheehheecceEEeecchhh
Confidence 1111110 000 010 1234688999999984321 1 1222233211 1133456
Q ss_pred EEEecCCcC-------------cCcccccCCCCccccc-ccCCCCHHHHHHHHHHHhhhhccc-----------------
Q 005661 332 VIAATNFPE-------------SLDKALVRPGRFDRHI-VVPNPDVEGRRQIMESHMSKVLKA----------------- 380 (685)
Q Consensus 332 VIaaTN~p~-------------~LD~aLlRpgRFd~~I-~i~~Pd~~eR~~ILk~~l~~~~~~----------------- 380 (685)
||+|+|... .+++++++ |||..+ -++.|++..-..|-++.+.....-
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrk 565 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRK 565 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHH
Confidence 889999653 46788898 999755 558888877777666665432110
Q ss_pred ---------Cccc----------HHHH--------HhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 381 ---------DDVD----------LMII--------ARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 381 ---------~~vd----------l~~l--------a~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
+-+. +..+ .+-+.+.|.++|+.+++-+..+|..+-++.||.+|+++|.+-+
T Consensus 566 Yi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 566 YIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 0000 0000 0112356788999999988888888888899999999987754
No 256
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.16 E-value=1.9e-05 Score=81.35 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD 306 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 306 (685)
..|..++||+|||||.++|.+|+.+|.+++.++|++..+. ..+.++|.-+... .+.+++||++.+-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~------- 97 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLS------- 97 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSS-------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhhh-------
Confidence 3478899999999999999999999999999999986542 3456666554332 4799999999872
Q ss_pred hHHHHHHHHHHHHH----hhc-----------cccCCCEEEEEecCCc----CcCcccccCCCCcccccccCCCCHHHHH
Q 005661 307 QQYMKMTLNQLLVE----LDG-----------FKQNEGIIVIAATNFP----ESLDKALVRPGRFDRHIVVPNPDVEGRR 367 (685)
Q Consensus 307 ~~~~~~~l~~LL~~----ld~-----------~~~~~~ViVIaaTN~p----~~LD~aLlRpgRFd~~I~i~~Pd~~eR~ 367 (685)
...-.++.+.+.. +.. +.-+.++-++.|.|.. ..|++.|+. +-|.+.+..||.....
T Consensus 98 -~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ 173 (231)
T PF12774_consen 98 -EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIA 173 (231)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHH
Confidence 2222222222222 211 0112234555666632 367777764 4578899999988766
Q ss_pred HHH
Q 005661 368 QIM 370 (685)
Q Consensus 368 ~IL 370 (685)
+++
T Consensus 174 ei~ 176 (231)
T PF12774_consen 174 EIL 176 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 257
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=1.7e-05 Score=84.16 Aligned_cols=123 Identities=17% Similarity=0.153 Sum_probs=83.2
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeecc--------chhhhH-hh----hhhHHHHHHHHHHHh----C
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS--------EFEEMF-VG----VGARRVRDLFSAAKK----R 285 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s--------~l~~~~-~g----~~~~~ir~lF~~A~~----~ 285 (685)
..+.|...||+||+|+||+.+|.++|..+-+.--.-+|. ++..-+ .+ .+...+|++-+.+.. .
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 457788999999999999999999998774320000110 000000 01 123455666555432 2
Q ss_pred CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCC
Q 005661 286 SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNP 361 (685)
Q Consensus 286 ~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~P 361 (685)
..-|++||++|.+. ....|.||..|+ .+..++++|..|+.++.|.|.+++ |+. .+.|+++
T Consensus 95 ~~kv~ii~~ad~mt-----------~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRMT-----------LDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CceEEEEechhhcC-----------HHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 33699999999883 456788888888 467788999999999999999987 764 5566654
No 258
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.11 E-value=7.9e-05 Score=76.74 Aligned_cols=183 Identities=21% Similarity=0.276 Sum_probs=113.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCC---CEEEeeccc-----hhhhHhhh------------hhHHHHHHHHHHHh-CCCe
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGV---PFFSCSGSE-----FEEMFVGV------------GARRVRDLFSAAKK-RSPC 288 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~---~fi~vs~s~-----l~~~~~g~------------~~~~ir~lF~~A~~-~~P~ 288 (685)
+.++|+.|||||++.|++....+- -.++++... +.+.++.+ ....-+.+....++ ..|-
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 678999999999999988776642 223443322 22222211 12222334444333 4568
Q ss_pred EEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCC------CCcccccccCCCC
Q 005661 289 IIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP------GRFDRHIVVPNPD 362 (685)
Q Consensus 289 ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRp------gRFd~~I~i~~Pd 362 (685)
++++||.+.+... ....+.-|.+.-+.+...-.|++|+=.. |.+.+++| -|++..|++++.+
T Consensus 134 ~l~vdEah~L~~~--------~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 134 VLMVDEAHDLNDS--------ALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred EEeehhHhhhChh--------HHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEecCCcC
Confidence 9999999988422 1222333332223333444466666432 33322221 1787668999999
Q ss_pred HHHHHHHHHHHhhhhcccCcc----cHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005661 363 VEGRRQIMESHMSKVLKADDV----DLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 425 (685)
Q Consensus 363 ~~eR~~ILk~~l~~~~~~~~v----dl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 425 (685)
.++-...++++++......++ .+..+...+.| .|.-|.++|..|...|...+.+.|+...+.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 999999999999876443322 24456666776 788999999999998888888888876553
No 259
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.08 E-value=1.8e-05 Score=84.77 Aligned_cols=169 Identities=22% Similarity=0.247 Sum_probs=93.3
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCchhh----hhhC---CCCCCeEEEEcCCCCChHHHHHHHHHhcCCCE-EEeeccchh
Q 005661 193 FSDVKGVDEAKQELEEIVHYLRDPKRF----TRLG---GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF-FSCSGSEFE 264 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~l~~~~~~----~~~g---~~~pkgvLL~GPPGTGKT~LAralA~e~~~~f-i~vs~s~l~ 264 (685)
|.+=.-+..+.+.|..+.+.+..+..- ..+. ..+|+|+.|+|+-|.|||+|.-.....+..+- ..+....|.
T Consensus 24 ~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM 103 (367)
T COG1485 24 FQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFM 103 (367)
T ss_pred CCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHH
Confidence 333233455666666666643332211 1122 44789999999999999999999988875533 233322322
Q ss_pred hh-------HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 265 EM-------FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 265 ~~-------~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
.. ..|.. .-+..+-... ...-.||+|||+.-= +-....++..|+.+|- ..+|++++|+|
T Consensus 104 ~~vH~~l~~l~g~~-dpl~~iA~~~-~~~~~vLCfDEF~Vt--------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN 169 (367)
T COG1485 104 ARVHQRLHTLQGQT-DPLPPIADEL-AAETRVLCFDEFEVT--------DIADAMILGRLLEALF----ARGVVLVATSN 169 (367)
T ss_pred HHHHHHHHHHcCCC-CccHHHHHHH-HhcCCEEEeeeeeec--------ChHHHHHHHHHHHHHH----HCCcEEEEeCC
Confidence 11 11111 0111111111 112249999998621 1113445666666654 35899999999
Q ss_pred Cc-CcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHH
Q 005661 338 FP-ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLM 386 (685)
Q Consensus 338 ~p-~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~ 386 (685)
.+ +.|-+.=+...|| +| -.++|+.++.-+..+...|+.
T Consensus 170 ~~P~~LY~dGlqR~~F-----LP------~I~li~~~~~v~~vD~~~DYR 208 (367)
T COG1485 170 TAPDNLYKDGLQRERF-----LP------AIDLIKSHFEVVNVDGPVDYR 208 (367)
T ss_pred CChHHhcccchhHHhh-----HH------HHHHHHHheEEEEecCCcccc
Confidence 63 4443222222344 22 256888888877777777764
No 260
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.08 E-value=3.9e-05 Score=75.34 Aligned_cols=103 Identities=23% Similarity=0.308 Sum_probs=60.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh------hh-----------------------hh-----
Q 005661 230 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------GV-----------------------GA----- 272 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~------g~-----------------------~~----- 272 (685)
+|++||||||||+++..++.+. |.++++++..+-.+.+. |. +.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886644 66777776543222110 00 00
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 273 RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 273 ~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
..+..+...+....|.+|+|||+..+... +.......+..++..+.. .++.+|.+++...
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~----~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~~ 141 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM----EQSTARLEIRRLLFALKR----FGVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc----ChHHHHHHHHHHHHHHHH----CCCEEEEEecccc
Confidence 01233444445678999999999988642 112223334445554432 2455666665443
No 261
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=7.3e-05 Score=79.45 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=85.7
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCE-------EEe-eccc-----hhhh-Hh---h--hhhHHHHHHHHHHH
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF-------FSC-SGSE-----FEEM-FV---G--VGARRVRDLFSAAK 283 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~f-------i~v-s~s~-----l~~~-~~---g--~~~~~ir~lF~~A~ 283 (685)
..+.|...||+|| +||+++|+++|..+-+.- =.+ +|.. +.+- ++ | .....+|++...+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 3567789999996 689999999998663211 000 0110 0000 00 1 12356677666553
Q ss_pred h----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccC
Q 005661 284 K----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVP 359 (685)
Q Consensus 284 ~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~ 359 (685)
. ....|++||++|.+. ...-|.||..++ .+..++++|..|+.++.+-|.+++ |+. +|.|+
T Consensus 98 ~~p~~~~~kV~II~~ad~m~-----------~~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f~ 161 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKMH-----------VNAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RTQ-IFHFP 161 (290)
T ss_pred hCcccCCcEEEEeehhhhcC-----------HHHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cce-eeeCC
Confidence 2 234699999999883 456788999888 466678999999999999999998 774 67776
Q ss_pred CCCHHHHHHHHH
Q 005661 360 NPDVEGRRQIME 371 (685)
Q Consensus 360 ~Pd~~eR~~ILk 371 (685)
. +.+...+++.
T Consensus 162 ~-~~~~~~~~L~ 172 (290)
T PRK07276 162 K-NEAYLIQLLE 172 (290)
T ss_pred C-cHHHHHHHHH
Confidence 5 5555555553
No 262
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.04 E-value=5.9e-05 Score=81.72 Aligned_cols=158 Identities=22% Similarity=0.257 Sum_probs=89.5
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCCCE--EEeeccchhhhHhhhhhHHHHHHHHHH-------------------
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF--FSCSGSEFEEMFVGVGARRVRDLFSAA------------------- 282 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~~f--i~vs~s~l~~~~~g~~~~~ir~lF~~A------------------- 282 (685)
..+|+|++|||..|||||+|.-..-..+.... -.+...+|.. ..-+++.++...-
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~----~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~v 186 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFML----SVHKRMHELKQEQGAEKPGYAKSWEIDPLPVV 186 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHH----HHHHHHHHHHHhccccCccccccccCCccHHH
Confidence 56799999999999999999988875442100 0111112211 0111111111110
Q ss_pred ---HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc-CcCcccccCCCCccccccc
Q 005661 283 ---KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP-ESLDKALVRPGRFDRHIVV 358 (685)
Q Consensus 283 ---~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p-~~LD~aLlRpgRFd~~I~i 358 (685)
-...-++|++||+.-- +-....+|+.|...|- ..+|++++|+|+. +.|-..=+. |...+
T Consensus 187 A~eIa~ea~lLCFDEfQVT--------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQ-----R~~F~ 249 (467)
T KOG2383|consen 187 ADEIAEEAILLCFDEFQVT--------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQ-----RENFI 249 (467)
T ss_pred HHHHhhhceeeeechhhhh--------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchh-----hhhhh
Confidence 1122379999998632 1123345666665543 3589999999974 455433222 23333
Q ss_pred CCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCC---CCCHH-HHHHHHHHHH
Q 005661 359 PNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTP---GFSGA-DLANLVNIAA 408 (685)
Q Consensus 359 ~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~---G~sga-dI~~lv~~A~ 408 (685)
| -..+|+++++-+.+.+.+|+...+.... .|.+. |...++++--
T Consensus 250 P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 250 P------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred h------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 3 2568899998888888999984433211 23333 7777776554
No 263
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.03 E-value=2.3e-05 Score=98.20 Aligned_cols=157 Identities=20% Similarity=0.273 Sum_probs=92.2
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCE---EEeecc-----
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF---FSCSGS----- 261 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~f---i~vs~s----- 261 (685)
...|++++|.+...+++..++.. .....+-+-|+||+|+||||||+++++....+| +.++..
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 45689999999998888876642 223345688999999999999999988774433 111110
Q ss_pred --chhh----hH---hhhhhHHHH-------------HHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 262 --EFEE----MF---VGVGARRVR-------------DLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 262 --~l~~----~~---~g~~~~~ir-------------~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
.+.. .+ .......+. ......-..++.+|+||++|.. ..+..+..
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~L~~ 316 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDALAG 316 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHHHHh
Confidence 0000 00 000000011 1111222356789999998742 12233322
Q ss_pred HhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhh
Q 005661 320 ELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSK 376 (685)
Q Consensus 320 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~ 376 (685)
..+.+ ..+..||.||.+... .+....++.+.++.|+.++-.+++..++-+
T Consensus 317 ~~~~~--~~GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 317 QTQWF--GSGSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred hCccC--CCCcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 22222 234566667775433 332346778899999999999999888743
No 264
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.02 E-value=6.1e-05 Score=79.10 Aligned_cols=171 Identities=22% Similarity=0.219 Sum_probs=88.9
Q ss_pred HHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHh--cCCCE---EEeeccc------hhhhH---hhh
Q 005661 205 ELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE--AGVPF---FSCSGSE------FEEMF---VGV 270 (685)
Q Consensus 205 ~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e--~~~~f---i~vs~s~------l~~~~---~g~ 270 (685)
+++++.+.|.... ...+-|.|+|++|+|||+||+.+++. ....| +.++.+. +.... .+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4555555554421 23446899999999999999999987 33322 2232221 11110 011
Q ss_pred ----------hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 271 ----------GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 271 ----------~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
.......+. ..-...+++|+||+++... .+..+...+.. ...+..||.||....
T Consensus 77 ~~~~~~~~~~~~~~~~~l~-~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~~~kilvTTR~~~ 140 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLR-ELLKDKRCLLVLDDVWDEE-------------DLEELREPLPS--FSSGSKILVTTRDRS 140 (287)
T ss_dssp C-STSSCCSSHHHHHHHHH-HHHCCTSEEEEEEEE-SHH-------------HH-------HC--HHSS-EEEEEESCGG
T ss_pred cccccccccccccccccch-hhhccccceeeeeeecccc-------------ccccccccccc--ccccccccccccccc
Confidence 112223333 3334559999999998541 12222222221 223567777887643
Q ss_pred cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhc---ccC-cccHHHHHhcCCCCCHHHHHHH
Q 005661 341 SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVL---KAD-DVDLMIIARGTPGFSGADLANL 403 (685)
Q Consensus 341 ~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~---~~~-~vdl~~la~~t~G~sgadI~~l 403 (685)
... ... .-+..+.++..+.++-.++|..+..... ... +-....|++.+.| .|--|.-+
T Consensus 141 v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 141 VAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp GGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 221 111 1145789999999999999999876543 111 1224568888865 44445444
No 265
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00011 Score=87.56 Aligned_cols=199 Identities=24% Similarity=0.288 Sum_probs=125.2
Q ss_pred CCcCCCc-HHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEeecc
Q 005661 193 FSDVKGV-DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSGS 261 (685)
Q Consensus 193 f~dV~G~-de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs~s 261 (685)
++-++|. ++- ++.+++-|.. +..++-+|.|.||+|||.++.-+++.. +..++.++..
T Consensus 185 ldPvigr~dee---irRvi~iL~R---------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEE---IRRVIEILSR---------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHH---HHHHHHHHhc---------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5677776 444 3333333222 223578999999999999999999866 3345666655
Q ss_pred chh--hhHhhhhhHHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 262 EFE--EMFVGVGARRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 262 ~l~--~~~~g~~~~~ir~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
.+. .++.|+.+.+++.+...+. .....||||||++-+.+...... .....+ +|..+- ..+++.+|+||..
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~---~~d~~n-lLkp~L---~rg~l~~IGatT~ 325 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG---AIDAAN-LLKPLL---ARGGLWCIGATTL 325 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch---HHHHHH-hhHHHH---hcCCeEEEecccH
Confidence 433 3477888899999999887 45668999999999877654422 111222 222222 2345899998873
Q ss_pred cC-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc--------ccHHHHH--hcCCCCCHHHHHHH
Q 005661 339 PE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD--------VDLMIIA--RGTPGFSGADLANL 403 (685)
Q Consensus 339 p~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~--------vdl~~la--~~t~G~sgadI~~l 403 (685)
.. .=||++-| ||+ .+.++.|+.+.-..||...-.+...... +....++ ..+..+.+.-...+
T Consensus 326 e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl 402 (898)
T KOG1051|consen 326 ETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDL 402 (898)
T ss_pred HHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccH
Confidence 32 34799998 998 6788999988877777766555222111 1111121 22344556666677
Q ss_pred HHHHHHHHHH
Q 005661 404 VNIAALKAAM 413 (685)
Q Consensus 404 v~~A~~~A~~ 413 (685)
+++|+.....
T Consensus 403 ~dEa~a~~~~ 412 (898)
T KOG1051|consen 403 EDEAAALVKS 412 (898)
T ss_pred HHHHHHHHhh
Confidence 7777665543
No 266
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.93 E-value=6.5e-05 Score=76.63 Aligned_cols=113 Identities=20% Similarity=0.277 Sum_probs=64.4
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-Hh---hh-------------------hhHHHHH
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-FV---GV-------------------GARRVRD 277 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-~~---g~-------------------~~~~ir~ 277 (685)
.....-++|+||||+|||+++..++.+. +.+.+++++..+... +. .. ....++.
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK 99 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence 3333458999999999999999998744 678888887632211 10 00 0011122
Q ss_pred HHHHHHhCCCeEEEEcCchhhcCCC--CCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 278 LFSAAKKRSPCIIFIDEIDAIGGSR--NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 278 lF~~A~~~~P~ILfIDEID~l~~~r--~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
+..... ..+.+|+||.+.++.... ...+.....+.+..++..|..+....++.+|.+..
T Consensus 100 ~~~~~~-~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 100 AEKLAK-ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHH-hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 222222 578999999999886432 11222223344455444444444456667776544
No 267
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.92 E-value=0.00021 Score=79.10 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=38.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIG 299 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~ 299 (685)
..++++.||||||||+++.+++... | -.++.+.+... ... ..+.. -....+|+|||+..+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~----L~~---~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYN----IST---RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHH----HHH---HHHhh--hccCCEEEEEcCCCCc
Confidence 4589999999999999999987762 3 22222222211 111 11111 1345699999999864
No 268
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00014 Score=77.86 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=88.4
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCC-----------C--EEEee--ccchhhhHhhhhhHHHHHHHHHHHh----
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV-----------P--FFSCS--GSEFEEMFVGVGARRVRDLFSAAKK---- 284 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~-----------~--fi~vs--~s~l~~~~~g~~~~~ir~lF~~A~~---- 284 (685)
.+.+...||+|+.|.||+.+++.+++.+-+ | ++.++ +.. .+...++++.+....
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~ 87 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFV 87 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCcc
Confidence 455668999999999999999999988722 2 22222 111 112345555554421
Q ss_pred -CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCH
Q 005661 285 -RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDV 363 (685)
Q Consensus 285 -~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~ 363 (685)
...-|++||++|.+. ....|.||..|+. +++.+++|..|+.++.+-+.+++ |.. ++.+++|+.
T Consensus 88 ~~~~KvvII~~~e~m~-----------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~ 151 (299)
T PRK07132 88 QSQKKILIIKNIEKTS-----------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQ 151 (299)
T ss_pred cCCceEEEEecccccC-----------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCH
Confidence 245799999998772 4456788888884 56677888888788888888887 664 789999998
Q ss_pred HHHHHHHHH
Q 005661 364 EGRRQIMES 372 (685)
Q Consensus 364 ~eR~~ILk~ 372 (685)
++..+.|..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 887776654
No 269
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=8.3e-05 Score=77.48 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeecc------chh-----hh---Hh---hhhhHHHHHHHHHHH----
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS------EFE-----EM---FV---GVGARRVRDLFSAAK---- 283 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s------~l~-----~~---~~---g~~~~~ir~lF~~A~---- 283 (685)
.+|..+||+||+|+||..+|.++|..+-+.--.-.|. .+. +- +. ..+...+|++-+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3577899999999999999999998763210000011 000 00 00 112344555544432
Q ss_pred h-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCC
Q 005661 284 K-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNP 361 (685)
Q Consensus 284 ~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~P 361 (685)
. ...-|++||++|.+ .....|.||..++ ++..++++|..|+.++.+.|.+++ |.. .+.++.+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 1 23479999999988 3556789999888 477789999999999999999998 764 4566666
No 270
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.86 E-value=5.8e-05 Score=85.25 Aligned_cols=194 Identities=23% Similarity=0.315 Sum_probs=105.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHH-----HHHHHHHHHh---CCCeEEEEcCchhhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR-----VRDLFSAAKK---RSPCIIFIDEIDAIGG 300 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~-----ir~lF~~A~~---~~P~ILfIDEID~l~~ 300 (685)
+|||+|.|||||+-+.|.+++-..+.++..--.. .-+|.++.. .+++--.+.. ...+|-+|||+|.+-.
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA---SavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd 560 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA---SAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND 560 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCc---cccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcc
Confidence 5999999999999999999998877766542111 011211111 1122111111 1235889999999954
Q ss_pred CCCCCchHHHHHHHHH-----HHHHhhccccCCCEEEEEecCCcC-------------cCcccccCCCCcccccccC---
Q 005661 301 SRNPKDQQYMKMTLNQ-----LLVELDGFKQNEGIIVIAATNFPE-------------SLDKALVRPGRFDRHIVVP--- 359 (685)
Q Consensus 301 ~r~~~~~~~~~~~l~~-----LL~~ld~~~~~~~ViVIaaTN~p~-------------~LD~aLlRpgRFd~~I~i~--- 359 (685)
......++.+++.-.. +...| ...+.||+|+|... .|-..+++ |||..-.+.
T Consensus 561 qDRtSIHEAMEQQSISISKAGIVtsL-----qArctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~v 633 (854)
T KOG0477|consen 561 QDRTSIHEAMEQQSISISKAGIVTSL-----QARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTV 633 (854)
T ss_pred cccchHHHHHHhcchhhhhhhHHHHH-----HhhhhhheecCCCCCccCCccchhhccccccchhh--hcceeeeeeccc
Confidence 3322323333221111 11111 24568899999631 23455565 888532221
Q ss_pred CCCHHHHHH--HHHHHhhhh--------------------------------------cccCcccHHHHHhc-------C
Q 005661 360 NPDVEGRRQ--IMESHMSKV--------------------------------------LKADDVDLMIIARG-------T 392 (685)
Q Consensus 360 ~Pd~~eR~~--ILk~~l~~~--------------------------------------~~~~~vdl~~la~~-------t 392 (685)
.|-.+++.. ++..|.+.. +.-.+.|.+.+++. +
T Consensus 634 d~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES 713 (854)
T KOG0477|consen 634 DPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKES 713 (854)
T ss_pred CchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhc
Confidence 122222222 333333211 11123333333221 1
Q ss_pred --CC---CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005661 393 --PG---FSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 393 --~G---~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~ 432 (685)
.| .+-+.|+.+++.+..+|...-+..|+.+|+..|+.-++
T Consensus 714 ~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~l 758 (854)
T KOG0477|consen 714 MATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVML 758 (854)
T ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHH
Confidence 11 35678888888888888887888899999988887654
No 271
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.85 E-value=1.4e-05 Score=72.30 Aligned_cols=23 Identities=39% Similarity=0.767 Sum_probs=20.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhcC
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~ 252 (685)
|+|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988764
No 272
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.83 E-value=6.7e-05 Score=76.68 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=41.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccch--h--------hhHhhhhhHHHHHHHHHHH--hCCCeEEEEc
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF--E--------EMFVGVGARRVRDLFSAAK--KRSPCIIFID 293 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l--~--------~~~~g~~~~~ir~lF~~A~--~~~P~ILfID 293 (685)
.|.-+||||+||+|||++|+.+++. ..++..+.+.- . ..-....-..+.+.+.... .....+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3567999999999999999999742 22333333210 0 0000001112233333322 2446799999
Q ss_pred CchhhcC
Q 005661 294 EIDAIGG 300 (685)
Q Consensus 294 EID~l~~ 300 (685)
+|+.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9998753
No 273
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.80 E-value=9.6e-05 Score=83.36 Aligned_cols=77 Identities=23% Similarity=0.385 Sum_probs=55.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh------hh--------hhHHHHHHHHHHHhCCC
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------GV--------GARRVRDLFSAAKKRSP 287 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~------g~--------~~~~ir~lF~~A~~~~P 287 (685)
....-+||+||||+|||+|+..++... +.++++++..+..+... |. ....+..+++..+...|
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~ 157 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKP 157 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCC
Confidence 333358899999999999999998765 67888888765443321 10 11234566666777789
Q ss_pred eEEEEcCchhhcCC
Q 005661 288 CIIFIDEIDAIGGS 301 (685)
Q Consensus 288 ~ILfIDEID~l~~~ 301 (685)
.+|+||+|..+...
T Consensus 158 ~lVVIDSIq~l~~~ 171 (446)
T PRK11823 158 DLVVIDSIQTMYSP 171 (446)
T ss_pred CEEEEechhhhccc
Confidence 99999999998653
No 274
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.79 E-value=0.0001 Score=81.21 Aligned_cols=77 Identities=26% Similarity=0.429 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh------hh--------hhHHHHHHHHHHHhCCC
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------GV--------GARRVRDLFSAAKKRSP 287 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~------g~--------~~~~ir~lF~~A~~~~P 287 (685)
....-++|+|+||+|||+|+..++... +.+++++++.+-.+... |. ....+..+++.+....|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 333458999999999999999998754 45788887754332211 10 11234566667777889
Q ss_pred eEEEEcCchhhcCC
Q 005661 288 CIIFIDEIDAIGGS 301 (685)
Q Consensus 288 ~ILfIDEID~l~~~ 301 (685)
.+|+||+|..+...
T Consensus 160 ~lVVIDSIq~l~~~ 173 (372)
T cd01121 160 DLVIIDSIQTVYSS 173 (372)
T ss_pred cEEEEcchHHhhcc
Confidence 99999999998643
No 275
>PHA00729 NTP-binding motif containing protein
Probab=97.76 E-value=5.3e-05 Score=77.50 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=22.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
.++|+|+||||||++|.+|+..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 276
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.74 E-value=0.00022 Score=79.18 Aligned_cols=125 Identities=25% Similarity=0.393 Sum_probs=65.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHH-----HHHHH---HhCCCeEEEEcCchhhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRD-----LFSAA---KKRSPCIIFIDEIDAIGG 300 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~-----lF~~A---~~~~P~ILfIDEID~l~~ 300 (685)
+|||.|.|||.|+-|.|-+-+-..+-++. ++..-. -.|.++..+|+ .+-+- --...+|++|||+|.+-.
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKGSS--AAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre 442 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKGSS--AAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE 442 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEEe-cCCCcc--cccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCc
Confidence 59999999999999999987765444332 221100 01111111111 10000 012346999999999842
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCc-----------CcCc--ccccCCCCcccccccCC
Q 005661 301 SRNPKDQQYMKMTLNQLLVELDGF--KQNEGIIVIAATNFP-----------ESLD--KALVRPGRFDRHIVVPN 360 (685)
Q Consensus 301 ~r~~~~~~~~~~~l~~LL~~ld~~--~~~~~ViVIaaTN~p-----------~~LD--~aLlRpgRFd~~I~i~~ 360 (685)
...-.-++.+++.-..+- --|+ .-++..-|+++.|.+ +.+| +.+++ |||.++-+..
T Consensus 443 ~DRVAIHEAMEQQTISIA--KAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD 513 (729)
T KOG0481|consen 443 DDRVAIHEAMEQQTISIA--KAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKD 513 (729)
T ss_pred hhhhHHHHHHHhhhHHHh--hhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEec
Confidence 211111222222111111 1122 224567888999854 2344 77787 9998776644
No 277
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.72 E-value=0.00027 Score=72.80 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=45.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh------h-------------------------hhh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------G-------------------------VGA 272 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~------g-------------------------~~~ 272 (685)
..-++++||||||||+++..++... |.+.++++..+-...+. | ...
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKR 103 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHH
Confidence 3459999999999999975554433 56677776543211100 0 002
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005661 273 RRVRDLFSAAKKRSPCIIFIDEIDAIG 299 (685)
Q Consensus 273 ~~ir~lF~~A~~~~P~ILfIDEID~l~ 299 (685)
..+..+........|.+++|||+-.+.
T Consensus 104 ~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 104 KFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 233444555555678999999999875
No 278
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.71 E-value=0.00027 Score=71.64 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=62.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhh-hH---hhh-------------------hhHHHHHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE-MF---VGV-------------------GARRVRDLFSA 281 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~-~~---~g~-------------------~~~~ir~lF~~ 281 (685)
.-++++|+||+|||+++..+|.+. +.+.++++...... .+ .+. ....+..+...
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETETF 99 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHHHHHHH
Confidence 348999999999999999998765 56777776542111 10 000 01112223322
Q ss_pred HHhCCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 282 AKKRSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 282 A~~~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
.. ..+++|+||-+..+....... ......+.+..++..|..+....++.||.+....
T Consensus 100 ~~-~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~ 158 (218)
T cd01394 100 AD-EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVY 158 (218)
T ss_pred Hh-cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCE
Confidence 22 348899999999985321111 1112223344444444555455677777776543
No 279
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.71 E-value=4.2e-05 Score=78.65 Aligned_cols=28 Identities=46% Similarity=0.732 Sum_probs=22.9
Q ss_pred CCCCCe--EEEEcCCCCChHHHHHHHHHhc
Q 005661 224 GKLPKG--VLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 224 ~~~pkg--vLL~GPPGTGKT~LAralA~e~ 251 (685)
...++| +-|.||+|||||||.+.||+-.
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444 8899999999999999999844
No 280
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.68 E-value=0.00019 Score=77.42 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=65.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-H---hh------------hhhHHHHHHHHHHHhCCCeE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-F---VG------------VGARRVRDLFSAAKKRSPCI 289 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-~---~g------------~~~~~ir~lF~~A~~~~P~I 289 (685)
.++|+||||||||+|+-.++.+. |.+.+++++....+. + .| ..+..+..+....+...+.+
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~l 136 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcE
Confidence 48899999999999988776544 667777766442221 0 01 11222333333345677899
Q ss_pred EEEcCchhhcCCCC-CC---c--hHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 290 IFIDEIDAIGGSRN-PK---D--QQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 290 LfIDEID~l~~~r~-~~---~--~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
|+||-+.++..+.. .. + .....+.+.+.|..|...-...++.+|.+..
T Consensus 137 IVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 137 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred EEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 99999999875311 10 1 1122244456666666665666777777643
No 281
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.65 E-value=0.00037 Score=74.25 Aligned_cols=161 Identities=21% Similarity=0.310 Sum_probs=97.4
Q ss_pred CcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHH-H--HhcCCCEEEeeccchhh--h-
Q 005661 194 SDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAI-A--GEAGVPFFSCSGSEFEE--M- 266 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAral-A--~e~~~~fi~vs~s~l~~--~- 266 (685)
..+.|..+....+.+++.. .-..+ ...|++.||.|+|||++.... + ++.|-+|+.+....+.. +
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 3566777777788887775 22211 236999999999999976644 3 36777887775543321 1
Q ss_pred ------------------HhhhhhHHHHHHHHHHHhC-----CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc
Q 005661 267 ------------------FVGVGARRVRDLFSAAKKR-----SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG 323 (685)
Q Consensus 267 ------------------~~g~~~~~ir~lF~~A~~~-----~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~ 323 (685)
..|....++..+....+.. .+.|.++||||.+.+. ..+..+..++..-.
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h-------~rQtllYnlfDisq- 166 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH-------SRQTLLYNLFDISQ- 166 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc-------hhhHHHHHHHHHHh-
Confidence 0111223333344333322 2456667899988642 13344455543322
Q ss_pred cccCCCEEEEEecCCcCcCc---ccccCCCCcccc-cccC-CCCHHHHHHHHHHHh
Q 005661 324 FKQNEGIIVIAATNFPESLD---KALVRPGRFDRH-IVVP-NPDVEGRRQIMESHM 374 (685)
Q Consensus 324 ~~~~~~ViVIaaTN~p~~LD---~aLlRpgRFd~~-I~i~-~Pd~~eR~~ILk~~l 374 (685)
....+|.||+.|.+.+.++ ....+ ||... |+++ ..+..+-.+|++..+
T Consensus 167 -s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 167 -SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred -hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 2356899999998887655 55555 99865 5554 445777777877776
No 282
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.64 E-value=0.00028 Score=76.11 Aligned_cols=114 Identities=24% Similarity=0.290 Sum_probs=66.0
Q ss_pred CCCCCe--EEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-Hh---h------------hhhHHHHHHHHHH
Q 005661 224 GKLPKG--VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-FV---G------------VGARRVRDLFSAA 282 (685)
Q Consensus 224 ~~~pkg--vLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-~~---g------------~~~~~ir~lF~~A 282 (685)
+-.|+| ++++||||||||+|+-.++.+. |.+.++++...-.+. +. | ..+..+..+-...
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 334444 7899999999999999887544 677777776432111 10 0 1112222222334
Q ss_pred HhCCCeEEEEcCchhhcCCC-CCC---ch--HHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 283 KKRSPCIIFIDEIDAIGGSR-NPK---DQ--QYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 283 ~~~~P~ILfIDEID~l~~~r-~~~---~~--~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
+...+.+|+||-+.++.++. ... +. ....+.+.+.|..|...-...++.+|.+..
T Consensus 130 ~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred hccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 56778999999999997531 111 10 112234455555555555556677776633
No 283
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.64 E-value=5e-05 Score=90.98 Aligned_cols=162 Identities=23% Similarity=0.261 Sum_probs=102.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhh-------hhHHHHHHHHH---HHh-CCC-eEEEEcCchh
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGV-------GARRVRDLFSA---AKK-RSP-CIIFIDEIDA 297 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~-------~~~~ir~lF~~---A~~-~~P-~ILfIDEID~ 297 (685)
+|++||||+|||+.+..+|.+.|..++..|.++....+... +...+...|.. ... ... .||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 69999999999999999999999999999998766543221 11223333310 000 112 3999999998
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcc-cccCCCCcccccccCCCCHHHHHHHHHHHhhh
Q 005661 298 IGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK-ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSK 376 (685)
Q Consensus 298 l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~-aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~ 376 (685)
+.. . +.. .-..+.+++. ...+-+|+++|..+.... ++. |-+..++|+.|+...+..-+...+..
T Consensus 440 ~~~-~---dRg-~v~~l~~l~~-------ks~~Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-E---DRG-GVSKLSSLCK-------KSSRPLVCTCNDRNLPKSRALS---RACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-h---hhh-hHHHHHHHHH-------hccCCeEEEecCCCCccccchh---hhcceeeecCCcHHHHHhhhhhhhcc
Confidence 864 1 111 1122333332 344578888887665543 333 44456899999999888876666643
Q ss_pred h-cccCcccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005661 377 V-LKADDVDLMIIARGTPGFSGADLANLVNIAALK 410 (685)
Q Consensus 377 ~-~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~ 410 (685)
. ....+-.++.+...+ ++||+++++.-...
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 2 222333355666654 67999888866555
No 284
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.63 E-value=0.00014 Score=70.98 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC---EEEeeccch
Q 005661 196 VKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---FFSCSGSEF 263 (685)
Q Consensus 196 V~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~---fi~vs~s~l 263 (685)
++|.++..+++...+.. .....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~---------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA---------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG---------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH---------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57888887777765531 123446789999999999999999987766433 777777766
No 285
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.62 E-value=0.00052 Score=70.53 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=30.0
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccc
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 262 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~ 262 (685)
|...+..++++||||+|||+++..++.+. |.+.++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 33444459999999999999999996543 66777776543
No 286
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.61 E-value=0.00011 Score=77.55 Aligned_cols=95 Identities=27% Similarity=0.426 Sum_probs=57.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCC----------CEEEee-ccchhhhH-------hhh------hhHHHHHHHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGV----------PFFSCS-GSEFEEMF-------VGV------GARRVRDLFSAAK 283 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~----------~fi~vs-~s~l~~~~-------~g~------~~~~ir~lF~~A~ 283 (685)
++++|.||||+||||+.+++++...- ++..++ ..++...+ ++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999987732 222221 11221111 010 1122345667777
Q ss_pred hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 284 KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 284 ~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
...|.+|++||+.. ...+..++..+. .++.+|++|+.++
T Consensus 192 ~~~P~villDE~~~-------------~e~~~~l~~~~~-----~G~~vI~ttH~~~ 230 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-------------EEDVEALLEALH-----AGVSIIATAHGRD 230 (270)
T ss_pred hCCCCEEEEeCCCc-------------HHHHHHHHHHHh-----CCCEEEEEechhH
Confidence 78999999999631 122334444332 3677888888643
No 287
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.59 E-value=0.0003 Score=71.99 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=66.3
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeeccch-hhh-Hh------------------------
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF-EEM-FV------------------------ 268 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~s~l-~~~-~~------------------------ 268 (685)
.....-+.|+||||+|||+++..++... +...++++..+- ... +.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 3334458899999999999999997543 256677776441 110 00
Q ss_pred -hhhhHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCCCCc--hHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 269 -GVGARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRNPKD--QQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 269 -g~~~~~ir~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~--~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
......+..+-...... .+++|+||-+..+........ .....+.+.+++..|..+....++.||.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 00011112222233445 789999999998853211111 2334455666777676666666777776644
No 288
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=5.3e-05 Score=69.12 Aligned_cols=30 Identities=40% Similarity=0.868 Sum_probs=27.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
|+|.||||+||||+|+.||+.+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877554
No 289
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.59 E-value=0.003 Score=66.67 Aligned_cols=127 Identities=22% Similarity=0.237 Sum_probs=73.9
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC-----CCEEEe--eccch---
Q 005661 195 DVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-----VPFFSC--SGSEF--- 263 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~-----~~fi~v--s~s~l--- 263 (685)
.|.|+.-+++.+-..+.. +.++. .+.|--+-|+|+|||||..+++.||+.+- .|++.. .-..|
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 467888888877766655 44442 34566677899999999999999999762 233211 11111
Q ss_pred --hhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH---hhccccCCCEEEEEecCC
Q 005661 264 --EEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE---LDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 264 --~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~---ld~~~~~~~ViVIaaTN~ 338 (685)
.+.|..+-... +-..+..++.+|+++||.|.|- ...-+.+..+|.. .+|.. ..+-|+|.-+|.
T Consensus 157 ~~ie~Yk~eL~~~---v~~~v~~C~rslFIFDE~DKmp--------~gLld~lkpfLdyyp~v~gv~-frkaIFIfLSN~ 224 (344)
T KOG2170|consen 157 SKIEDYKEELKNR---VRGTVQACQRSLFIFDEVDKLP--------PGLLDVLKPFLDYYPQVSGVD-FRKAIFIFLSNA 224 (344)
T ss_pred HHHHHHHHHHHHH---HHHHHHhcCCceEEechhhhcC--------HhHHHHHhhhhcccccccccc-ccceEEEEEcCC
Confidence 12222222222 3334456777899999999883 2244444555431 12211 234566666664
Q ss_pred c
Q 005661 339 P 339 (685)
Q Consensus 339 p 339 (685)
-
T Consensus 225 g 225 (344)
T KOG2170|consen 225 G 225 (344)
T ss_pred c
Confidence 3
No 290
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.59 E-value=0.0004 Score=70.00 Aligned_cols=105 Identities=24% Similarity=0.329 Sum_probs=59.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc-----CCCEE-----------Eeeccchhhh-----HhhhhhHHHHHHHHHHHhCC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA-----GVPFF-----------SCSGSEFEEM-----FVGVGARRVRDLFSAAKKRS 286 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~-----~~~fi-----------~vs~s~l~~~-----~~g~~~~~ir~lF~~A~~~~ 286 (685)
+.++|+||+|+||||+.|.++... |.++- ..+.+...+. .......++..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 568999999999999999998533 43320 1111100000 01111245667777665558
Q ss_pred CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 287 PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 287 P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
|.++++||.-.-. +..........++..+. . .+..+|.+|+.++.+
T Consensus 106 p~llllDEp~~gl------D~~~~~~l~~~ll~~l~---~-~~~tiiivTH~~~~~ 151 (199)
T cd03283 106 PVLFLLDEIFKGT------NSRERQAASAAVLKFLK---N-KNTIGIISTHDLELA 151 (199)
T ss_pred CeEEEEecccCCC------CHHHHHHHHHHHHHHHH---H-CCCEEEEEcCcHHHH
Confidence 9999999974321 11222223344555443 1 256778888876644
No 291
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.58 E-value=0.00038 Score=70.77 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=66.9
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc---C------CCEEEeeccch-hh-hHhh---------------------h
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---G------VPFFSCSGSEF-EE-MFVG---------------------V 270 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~---~------~~fi~vs~s~l-~~-~~~g---------------------~ 270 (685)
|.....-+.|+||||+|||+++..++... + ...++++...- .. .+.. .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 33444458899999999999999998653 2 56667766532 11 0000 0
Q ss_pred hhHHHHHHHHH----HHhCCCeEEEEcCchhhcCCCCCCc--hHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 271 GARRVRDLFSA----AKKRSPCIIFIDEIDAIGGSRNPKD--QQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 271 ~~~~ir~lF~~----A~~~~P~ILfIDEID~l~~~r~~~~--~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
....+...+.. .....+++|+||-|..+........ .....+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 01111122222 2245788999999998865321111 2233455667777777666666777776654
No 292
>PRK08118 topology modulation protein; Reviewed
Probab=97.56 E-value=0.00013 Score=71.42 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=30.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeecc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS 261 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s 261 (685)
-|+++||||+||||+|+.|++.++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999999888753
No 293
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.56 E-value=0.00015 Score=88.65 Aligned_cols=138 Identities=30% Similarity=0.386 Sum_probs=92.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh--Hhh-----h--hhHHHH-HHHHHHHhCCCeEEEEcCch
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--FVG-----V--GARRVR-DLFSAAKKRSPCIIFIDEID 296 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~--~~g-----~--~~~~ir-~lF~~A~~~~P~ILfIDEID 296 (685)
.+++||.|.||+|||.|..++|+..|-.++.++.++-.+. ..| + ++-+.+ .-|-.|. ....-+++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~am-r~G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAM-RDGGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHh-hcCCEEEeehhh
Confidence 4579999999999999999999999999999998864432 112 1 111111 1232332 233589999997
Q ss_pred hhcCCCCCCchHHHHHHHHHHHH--------Hhh-ccccCCCEEEEEecCCcC------cCcccccCCCCcccccccCCC
Q 005661 297 AIGGSRNPKDQQYMKMTLNQLLV--------ELD-GFKQNEGIIVIAATNFPE------SLDKALVRPGRFDRHIVVPNP 361 (685)
Q Consensus 297 ~l~~~r~~~~~~~~~~~l~~LL~--------~ld-~~~~~~~ViVIaaTN~p~------~LD~aLlRpgRFd~~I~i~~P 361 (685)
--. +..-.-+|..|. ++| .|.-.+++.|++|-|.-+ .|+..++. ||. +|++...
T Consensus 1622 LaS--------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~~d~l 1690 (4600)
T COG5271 1622 LAS--------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVKMDGL 1690 (4600)
T ss_pred hhH--------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEEeccc
Confidence 431 112222333222 222 245567889999988654 58888887 996 7788888
Q ss_pred CHHHHHHHHHHHhhh
Q 005661 362 DVEGRRQIMESHMSK 376 (685)
Q Consensus 362 d~~eR~~ILk~~l~~ 376 (685)
+.++...|.++....
T Consensus 1691 t~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1691 TTDDITHIANKMYPQ 1705 (4600)
T ss_pred ccchHHHHHHhhCCc
Confidence 888888888877654
No 294
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.55 E-value=0.0003 Score=73.40 Aligned_cols=80 Identities=25% Similarity=0.414 Sum_probs=53.6
Q ss_pred hCCCCCCeEEEEcCCCCChHHHHHHHHH------hcCCCEEEeeccchhhhH-hhhhhHHHHHHHHHH--------HhCC
Q 005661 222 LGGKLPKGVLLVGPPGTGKTMLARAIAG------EAGVPFFSCSGSEFEEMF-VGVGARRVRDLFSAA--------KKRS 286 (685)
Q Consensus 222 ~g~~~pkgvLL~GPPGTGKT~LAralA~------e~~~~fi~vs~s~l~~~~-~g~~~~~ir~lF~~A--------~~~~ 286 (685)
..+.....+||.||.|.||++||+.|-. .+..+|+.+||..+...- ....-..++..|.-| +...
T Consensus 203 va~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsad 282 (531)
T COG4650 203 VAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSAD 282 (531)
T ss_pred HHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCC
Confidence 3445555799999999999999999853 457899999999875421 011112233333322 2234
Q ss_pred CeEEEEcCchhhcCC
Q 005661 287 PCIIFIDEIDAIGGS 301 (685)
Q Consensus 287 P~ILfIDEID~l~~~ 301 (685)
...||+|||..++..
T Consensus 283 ggmlfldeigelgad 297 (531)
T COG4650 283 GGMLFLDEIGELGAD 297 (531)
T ss_pred CceEehHhhhhcCcc
Confidence 579999999998743
No 295
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.53 E-value=0.0016 Score=69.75 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=50.3
Q ss_pred CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCC---------C-----
Q 005661 285 RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP---------G----- 350 (685)
Q Consensus 285 ~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRp---------g----- 350 (685)
..+-||||||+|.+.+ + .+.+++..+.-+-...++++|.+.+.. .+..++... |
T Consensus 171 ~~~iViiIDdLDR~~~-------~----~i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~yLe 238 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSP-------E----EIVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGREYLE 238 (325)
T ss_pred CceEEEEEcchhcCCc-------H----HHHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHHHHH
Confidence 3567999999998832 1 233344444444445788888887632 222222110 0
Q ss_pred -CcccccccCCCCHHHHHHHHHHHhhhh
Q 005661 351 -RFDRHIVVPNPDVEGRRQIMESHMSKV 377 (685)
Q Consensus 351 -RFd~~I~i~~Pd~~eR~~ILk~~l~~~ 377 (685)
-|+..+.+|.|+..+...++...+.+.
T Consensus 239 Kiiq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 239 KIIQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred hhcCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 466677899999999888888776543
No 296
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.52 E-value=0.00014 Score=82.93 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=44.5
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-CCCEEEeec
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCSG 260 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-~~~fi~vs~ 260 (685)
-|+|+.|++++++.+-+.+.. . ...++. ..+.++|.||||+|||+||++|++.+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~---A--a~gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRH---A--AQGLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHH---H--HHhcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 489999999998877665522 1 011111 22468899999999999999999877 346666544
No 297
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.51 E-value=0.00049 Score=66.48 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.+.-++++|+||+||||++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34569999999999999999999866
No 298
>PHA02624 large T antigen; Provisional
Probab=97.48 E-value=0.00024 Score=81.50 Aligned_cols=118 Identities=20% Similarity=0.194 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCC-
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRN- 303 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~- 303 (685)
...+.++|+||||||||+++.+|++.++...+.+++..-... -.+.-+... -+++||++-.-.....
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~----------FwL~pl~D~--~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN----------FELGCAIDQ--FMVVFEDVKGQPADNKD 496 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH----------HHhhhhhhc--eEEEeeecccccccccc
Confidence 333479999999999999999999999766777875542221 111112122 3777888753322110
Q ss_pred -CCchHHHHHHHHHHHHHhhcc--------ccCC----CEEEEEecCCcCcCcccccCCCCcccccccC
Q 005661 304 -PKDQQYMKMTLNQLLVELDGF--------KQNE----GIIVIAATNFPESLDKALVRPGRFDRHIVVP 359 (685)
Q Consensus 304 -~~~~~~~~~~l~~LL~~ld~~--------~~~~----~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~ 359 (685)
+.+ .++. .+..|=..|||. ..+. --..|.|||. ..|+..+.- ||.+++.|.
T Consensus 497 Lp~G-~~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 497 LPSG-QGMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred CCcc-cccc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 000 1111 012222334553 0010 0245668884 456666665 898888874
No 299
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.47 E-value=0.0021 Score=69.69 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=92.9
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh-------
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM------- 266 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~------- 266 (685)
..+.+.+.+++.|..++-. .....|..+.|+|-.|||||.+.|.+-+..+.+.+.++|-+....
T Consensus 6 ~~v~~Re~qi~~L~~Llg~---------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN---------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCC---------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 4667778887777765531 123568889999999999999999999999999999988654221
Q ss_pred ---H-----hh----hhhHHHH---HHHHH--HHh--CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC
Q 005661 267 ---F-----VG----VGARRVR---DLFSA--AKK--RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN 327 (685)
Q Consensus 267 ---~-----~g----~~~~~ir---~lF~~--A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~ 327 (685)
. .| ....++. .+|.+ +.. ...-.|++|.+|.+-.. ....++.++..-+ .-+.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~--------~a~ll~~l~~L~e-l~~~ 147 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM--------DAILLQCLFRLYE-LLNE 147 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc--------chHHHHHHHHHHH-HhCC
Confidence 0 01 1112222 22322 111 23568999999998411 1222333332211 1122
Q ss_pred CCEEEEEecCCcCcCcccccCCCCccc-ccccCCCCHHHHHHHHHHHhh
Q 005661 328 EGIIVIAATNFPESLDKALVRPGRFDR-HIVVPNPDVEGRRQIMESHMS 375 (685)
Q Consensus 328 ~~ViVIaaTN~p~~LD~aLlRpgRFd~-~I~i~~Pd~~eR~~ILk~~l~ 375 (685)
..+.+|...-..+ +--+.+-|-++. .++||-|+.++.+.|+.+--.
T Consensus 148 ~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 148 PTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred CceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 2333332222111 111222344442 568999999999999865543
No 300
>PRK07261 topology modulation protein; Provisional
Probab=97.46 E-value=0.00023 Score=69.94 Aligned_cols=35 Identities=26% Similarity=0.518 Sum_probs=30.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccch
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 263 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l 263 (685)
-|+++|+||+||||||+.|+...+.|++..+.-.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 38999999999999999999999999887764433
No 301
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.46 E-value=0.00085 Score=74.73 Aligned_cols=123 Identities=16% Similarity=0.166 Sum_probs=74.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchH
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQ 308 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~ 308 (685)
-++|+||.++||||+++.+.+...-.+++++..+........ ......+..+.....+.||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999999888875556666665554332211 112222222222245799999999772
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHH
Q 005661 309 YMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQ 368 (685)
Q Consensus 309 ~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ 368 (685)
.....+..+. |.... ++++.+++...-....+-.-+||. ..+.+.|.+..+...
T Consensus 108 ~W~~~lk~l~---d~~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 DWERALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred hHHHHHHHHH---ccccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 2455555554 22111 344444443333333333446795 477888888888765
No 302
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.46 E-value=8.5e-05 Score=74.33 Aligned_cols=123 Identities=22% Similarity=0.244 Sum_probs=57.3
Q ss_pred EEEEcCCCCChHHHHHHH-HHh---cCCCEEEeeccchhhh----HhhhhhH-------------HHHHHHHHHHhCCCe
Q 005661 230 VLLVGPPGTGKTMLARAI-AGE---AGVPFFSCSGSEFEEM----FVGVGAR-------------RVRDLFSAAKKRSPC 288 (685)
Q Consensus 230 vLL~GPPGTGKT~LAral-A~e---~~~~fi~vs~s~l~~~----~~g~~~~-------------~ir~lF~~A~~~~P~ 288 (685)
.+++|.||+|||+.|-.. ... .|++++. +...+.-. +.+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988655 332 3666655 54322211 0000000 001111111111468
Q ss_pred EEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCC
Q 005661 289 IIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNP 361 (685)
Q Consensus 289 ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~P 361 (685)
+|+|||++.+.+.+...... ....+ + .+.. ....++-||.+|..+..+|+.+++ ..+.++.+..+
T Consensus 82 liviDEa~~~~~~r~~~~~~-~~~~~-~---~l~~-hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK-VPEII-E---FLAQ-HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T-----HHH-H---GGGG-CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccccc-chHHH-H---HHHH-hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 99999999998877553211 12222 2 2222 334578889999999999998876 66666655433
No 303
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.46 E-value=0.00013 Score=70.60 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
.|..|+|+|+||||||++|+.||+.++.+|+..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999999988543
No 304
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.00045 Score=75.95 Aligned_cols=111 Identities=20% Similarity=0.331 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc----C-CCEEEeeccchh----hh------Hhhhh------hHHHHHHHHHHH
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA----G-VPFFSCSGSEFE----EM------FVGVG------ARRVRDLFSAAK 283 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~----~-~~fi~vs~s~l~----~~------~~g~~------~~~ir~lF~~A~ 283 (685)
.....++|+||+|+||||++..||..+ | ..+..+.+..+. +. ..|.. ...+...+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-- 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-- 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--
Confidence 334579999999999999999999764 3 244444444431 00 11111 1112222222
Q ss_pred hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCCEEEEEecCCcCcCccccc
Q 005661 284 KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-NEGIIVIAATNFPESLDKALV 347 (685)
Q Consensus 284 ~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~p~~LD~aLl 347 (685)
.....+|+||...... ....+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 213 l~~~DlVLIDTaG~~~----------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQ----------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred hcCCCEEEEcCCCCCc----------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 2345799999986331 12234444555544333 345777788887776665443
No 305
>PRK05973 replicative DNA helicase; Provisional
Probab=97.45 E-value=0.0032 Score=65.15 Aligned_cols=34 Identities=38% Similarity=0.326 Sum_probs=27.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 262 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~ 262 (685)
-+||.|+||+|||+++-.++.+. |.+.++++..+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 48999999999999998876644 77777776553
No 306
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.43 E-value=0.0045 Score=70.64 Aligned_cols=123 Identities=14% Similarity=0.184 Sum_probs=81.3
Q ss_pred CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHH
Q 005661 286 SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEG 365 (685)
Q Consensus 286 ~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~e 365 (685)
.|+|++|.+++.+... ....+.+..+...+. ...+.+||.+.+ -.+++.|. ++-..+.+|+|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~------~~~~r~l~~l~~~~~---~~~~~~i~~~~~--~~~p~el~---~~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND------ISISRKLRNLSRILK---TQPKTIIIIASE--LNIPKELK---DLITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc------hHHHHHHHHHHHHHH---hCCCEEEEEcCC--CCCCHHHH---hceeEEeecCcCHHH
Confidence 3789999999998721 223444445444333 344556655543 34566665 344577999999999
Q ss_pred HHHHHHHHhhhhcc-cCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 366 RRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 366 R~~ILk~~l~~~~~-~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
+.++++.+...... ..+-+++.+++.+.|+|-.++++++..+.. ....++.+++...
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~-----~~~~~~~~~~~~i 204 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA-----TYKTIDENSIPLI 204 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HcCCCChhhHHHH
Confidence 99999887754322 234457789999999999999999876432 1235677665443
No 307
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.42 E-value=0.00074 Score=76.42 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=51.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh------hh--------hhHHHHHHHHHHHhCCCeE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------GV--------GARRVRDLFSAAKKRSPCI 289 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~------g~--------~~~~ir~lF~~A~~~~P~I 289 (685)
..-+||+|+||+|||+|+..++... +.+.+++++.+-..... |. ....+..+...+....|.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~ 173 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQA 173 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcE
Confidence 3348999999999999999987755 45788888755433211 10 1123445556667778999
Q ss_pred EEEcCchhhcC
Q 005661 290 IFIDEIDAIGG 300 (685)
Q Consensus 290 LfIDEID~l~~ 300 (685)
|+||.|..+..
T Consensus 174 vVIDSIq~l~~ 184 (454)
T TIGR00416 174 CVIDSIQTLYS 184 (454)
T ss_pred EEEecchhhcc
Confidence 99999999864
No 308
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.39 E-value=0.0027 Score=71.35 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccch
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEF 263 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l 263 (685)
..|..++|+|++|+||||++..+|..+ |..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 457789999999999999999998766 556666666544
No 309
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.37 E-value=0.0015 Score=64.26 Aligned_cols=93 Identities=14% Similarity=0.199 Sum_probs=54.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh-Hhhhh----------------hHHHHHHHHHHHhCCCeEEE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVG----------------ARRVRDLFSAAKKRSPCIIF 291 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~-~~g~~----------------~~~ir~lF~~A~~~~P~ILf 291 (685)
-+|+.||||+|||++|..++...+.+++++......+. ..... ...+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 48999999999999999999998888777765432211 10000 00122333221 23456899
Q ss_pred EcCchhhcCCCCCCch-HHHHHHHHHHHHHhh
Q 005661 292 IDEIDAIGGSRNPKDQ-QYMKMTLNQLLVELD 322 (685)
Q Consensus 292 IDEID~l~~~r~~~~~-~~~~~~l~~LL~~ld 322 (685)
||-+..+.......+. ......+..++..+.
T Consensus 82 ID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~ 113 (170)
T PRK05800 82 VDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ 113 (170)
T ss_pred ehhHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 9999988643321111 223344555665554
No 310
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.36 E-value=0.00048 Score=64.49 Aligned_cols=34 Identities=38% Similarity=0.703 Sum_probs=27.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 265 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~ 265 (685)
|+++||||+||||+|+.+++..+ ...++...+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHH
Confidence 78999999999999999999998 44455444443
No 311
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.36 E-value=0.0016 Score=66.47 Aligned_cols=108 Identities=24% Similarity=0.283 Sum_probs=60.4
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccchhhhHh--------------h---------------
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEMFV--------------G--------------- 269 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~l~~~~~--------------g--------------- 269 (685)
|...+..+|+.||||||||+++..++.+. |-+.++++..+-.+.+. .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 44444569999999999999999775433 77887777543221110 0
Q ss_pred ----hhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 270 ----VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 270 ----~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
........+.+..+...+.+++||-+..+... .........+..+...+. ..++.+|.+.+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~---~~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLY---DDPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS---SSGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc---CCHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 01122333444445567789999999999222 122223444555555442 23445555544
No 312
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.31 E-value=0.0017 Score=66.74 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeecc
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 261 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s 261 (685)
|.....-++|.|+||+|||+++..++... +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 44444568999999999999999886544 7788777754
No 313
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.31 E-value=0.0018 Score=66.03 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHH-----hcCCCEEEe--------------eccchhhhHhhhhhHHHHHHHH-HHHhCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAG-----EAGVPFFSC--------------SGSEFEEMFVGVGARRVRDLFS-AAKKRS 286 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~-----e~~~~fi~v--------------s~s~l~~~~~g~~~~~ir~lF~-~A~~~~ 286 (685)
++.++|+||.|+|||++.|.++. ..|.++... ...+-...........++.+-. ......
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 46799999999999999999983 234332111 1111010111111122222222 123357
Q ss_pred CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 287 PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 287 P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
|.+++|||+..-. +.......+..++..+-. ....+..+|.+|+..+.+....
T Consensus 109 ~slvllDE~~~gt------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKGT------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCCC------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhhh
Confidence 8999999987432 112223333444444321 1123457888898877655443
No 314
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.30 E-value=0.00063 Score=68.34 Aligned_cols=97 Identities=22% Similarity=0.320 Sum_probs=51.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh----HhhhhhHHHHHHHHHHH---------hCCCeEEEE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM----FVGVGARRVRDLFSAAK---------KRSPCIIFI 292 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~----~~g~~~~~ir~lF~~A~---------~~~P~ILfI 292 (685)
.+++.||||||||++++.+...+ +..++.+..+.-... ..+.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 58889999999999999987544 666666655432111 11111122222222111 123479999
Q ss_pred cCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 293 DEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 293 DEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
||+..+. ...+..|+..... ...++++++-.+.
T Consensus 100 DEasmv~-----------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMVD-----------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-B-----------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ecccccC-----------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 9998773 2334555544432 2346777776554
No 315
>PRK09354 recA recombinase A; Provisional
Probab=97.29 E-value=0.0012 Score=71.81 Aligned_cols=112 Identities=24% Similarity=0.286 Sum_probs=63.4
Q ss_pred CCCCCe--EEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-Hh---h------------hhhHHHHHHHHHH
Q 005661 224 GKLPKG--VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-FV---G------------VGARRVRDLFSAA 282 (685)
Q Consensus 224 ~~~pkg--vLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-~~---g------------~~~~~ir~lF~~A 282 (685)
+-.|+| ++|+||||||||+|+-.++.+. |...++++...-.+. +. | ..+..+..+-...
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 344544 8899999999999999876543 677777776542211 10 0 1111222222234
Q ss_pred HhCCCeEEEEcCchhhcCCC-CCC---c--hHHHHHHHHHHHHHhhccccCCCEEEEEe
Q 005661 283 KKRSPCIIFIDEIDAIGGSR-NPK---D--QQYMKMTLNQLLVELDGFKQNEGIIVIAA 335 (685)
Q Consensus 283 ~~~~P~ILfIDEID~l~~~r-~~~---~--~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 335 (685)
+...+.+|+||-+-++.++. ... + .....+.+.+.|..|-.+-...++.+|.+
T Consensus 135 ~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred hcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 55678999999999987521 110 1 11122334444544444445566677665
No 316
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.29 E-value=0.0015 Score=60.92 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=40.5
Q ss_pred CcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 194 SDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..|.|+.-+.+.+...+.. +.++ ..+.|.-+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4689999998888777665 5443 23445556799999999999999999985
No 317
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.27 E-value=0.00099 Score=66.97 Aligned_cols=67 Identities=25% Similarity=0.423 Sum_probs=41.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCC----CEEEee-ccchhh---------hHhhhhhHHHHHHHHHHHhCCCeEEEEcCc
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGV----PFFSCS-GSEFEE---------MFVGVGARRVRDLFSAAKKRSPCIIFIDEI 295 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~----~fi~vs-~s~l~~---------~~~g~~~~~ir~lF~~A~~~~P~ILfIDEI 295 (685)
+++.||+|+||||+++++++.... .++.+. ..++.. .-++.....+.+.+..+....|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 789999999999999999887742 222221 111110 001111223444555666678999999998
Q ss_pred h
Q 005661 296 D 296 (685)
Q Consensus 296 D 296 (685)
.
T Consensus 84 r 84 (198)
T cd01131 84 R 84 (198)
T ss_pred C
Confidence 3
No 318
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.26 E-value=0.0021 Score=66.39 Aligned_cols=40 Identities=33% Similarity=0.404 Sum_probs=29.2
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHh---cCCCEEEeeccc
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGE---AGVPFFSCSGSE 262 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e---~~~~fi~vs~s~ 262 (685)
|......+|++||||+|||+++..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4444456999999999999999876543 366777776544
No 319
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.26 E-value=0.0022 Score=57.98 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
++++++||+|+|||+++-.++...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988887665
No 320
>PRK04296 thymidine kinase; Provisional
Probab=97.24 E-value=0.001 Score=66.50 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=41.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc----chhh---hHhhhh-----hHHHHHHHHHHH--hCCCeEEE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS----EFEE---MFVGVG-----ARRVRDLFSAAK--KRSPCIIF 291 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s----~l~~---~~~g~~-----~~~ir~lF~~A~--~~~P~ILf 291 (685)
-.|++||||+|||+++..++.++ +..++.+..+ .... ...|.. .....+++..++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887765 5555555331 1000 001110 112334444443 34568999
Q ss_pred EcCchhh
Q 005661 292 IDEIDAI 298 (685)
Q Consensus 292 IDEID~l 298 (685)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999754
No 321
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.23 E-value=0.0022 Score=67.10 Aligned_cols=39 Identities=28% Similarity=0.274 Sum_probs=29.3
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeecc
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 261 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s 261 (685)
|.....-++|.||||+|||+++..++..+ |.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 34444468999999999999999887653 6677777653
No 322
>PRK10536 hypothetical protein; Provisional
Probab=97.22 E-value=0.0015 Score=68.15 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=32.5
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHh
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e 250 (685)
..|.-|.+.......+...+. +. .-+++.||+|||||+||.+++.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~---~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIE---SK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHh---cC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 445566666666555554332 21 26999999999999999999884
No 323
>PRK13947 shikimate kinase; Provisional
Probab=97.20 E-value=0.00034 Score=67.97 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=28.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
+|+|.|+||+|||++++.||+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997655
No 324
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0016 Score=72.01 Aligned_cols=139 Identities=14% Similarity=0.235 Sum_probs=71.8
Q ss_pred cCCCcHHHHHHHHHHHH-HhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-------CCCEEEeeccchhhh
Q 005661 195 DVKGVDEAKQELEEIVH-YLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------GVPFFSCSGSEFEEM 266 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~-~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-------~~~fi~vs~s~l~~~ 266 (685)
++...+.+++.+.+.+. .+.....+ .....|+.++|+||+|+||||++..+|..+ +..+..+++..+...
T Consensus 143 ~~~~~~~v~~~l~~~l~~~i~~~~~~--~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a 220 (388)
T PRK12723 143 DLDDYDKVRDSVIIYIAKTIKCSGSI--IDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG 220 (388)
T ss_pred hcCCHHHHHHHHHHHHHHHhhccCcc--ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH
Confidence 33345556666554443 23222111 112346789999999999999999998754 334444444332110
Q ss_pred -------Hh---h------hhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC-CC
Q 005661 267 -------FV---G------VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN-EG 329 (685)
Q Consensus 267 -------~~---g------~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~-~~ 329 (685)
|. | .....+...+... ....+|+||+..... .+.. .+.++...++..... ..
T Consensus 221 a~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~-----~~~~----~l~el~~~l~~~~~~~e~ 289 (388)
T PRK12723 221 AKKQIQTYGDIMGIPVKAIESFKDLKEEITQS--KDFDLVLVDTIGKSP-----KDFM----KLAEMKELLNACGRDAEF 289 (388)
T ss_pred HHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCc-----cCHH----HHHHHHHHHHhcCCCCeE
Confidence 10 1 1112233333332 345799999998552 1111 134444444433323 45
Q ss_pred EEEEEecCCcCcCcccc
Q 005661 330 IIVIAATNFPESLDKAL 346 (685)
Q Consensus 330 ViVIaaTN~p~~LD~aL 346 (685)
++|+.+|.....+...+
T Consensus 290 ~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 290 HLAVSSTTKTSDVKEIF 306 (388)
T ss_pred EEEEcCCCCHHHHHHHH
Confidence 67777777666555443
No 325
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.0022 Score=65.31 Aligned_cols=70 Identities=31% Similarity=0.436 Sum_probs=46.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC--------CCEEEeec-cchhhhHhhh-------------hhHHHHHHHHHHHhCC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG--------VPFFSCSG-SEFEEMFVGV-------------GARRVRDLFSAAKKRS 286 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~--------~~fi~vs~-s~l~~~~~g~-------------~~~~ir~lF~~A~~~~ 286 (685)
+.|+.||||+||||+.|-+|+-+. ..+..++- +++.....|. ..-.-..+....+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 689999999999999999998652 22333332 2222211121 1122345666778899
Q ss_pred CeEEEEcCchhh
Q 005661 287 PCIIFIDEIDAI 298 (685)
Q Consensus 287 P~ILfIDEID~l 298 (685)
|.|+++|||...
T Consensus 219 PEViIvDEIGt~ 230 (308)
T COG3854 219 PEVIIVDEIGTE 230 (308)
T ss_pred CcEEEEeccccH
Confidence 999999999754
No 326
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.18 E-value=0.0038 Score=65.14 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=22.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGV 253 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~ 253 (685)
-++|.||+|+|||+|++.+++....
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 5999999999999999999987754
No 327
>PHA02774 E1; Provisional
Probab=97.18 E-value=0.0011 Score=75.98 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=37.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEE-eeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFS-CSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEI 295 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~-vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEI 295 (685)
.+++|+||||||||++|-+|++.++...+. +|... .| .++.+... .|++|||+
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~F----------wLqpl~d~--ki~vlDD~ 488 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HF----------WLQPLADA--KIALLDDA 488 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---cc----------ccchhccC--CEEEEecC
Confidence 479999999999999999999998654433 55321 11 12233222 49999998
No 328
>PRK06762 hypothetical protein; Provisional
Probab=97.17 E-value=0.0011 Score=64.19 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 265 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~ 265 (685)
|.-++|+|+||+||||+|+.+++.++..++.++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 556899999999999999999999976677777655544
No 329
>PRK13948 shikimate kinase; Provisional
Probab=97.17 E-value=0.0014 Score=65.22 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
.|..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4578999999999999999999999999999665
No 330
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.16 E-value=0.00078 Score=70.69 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=59.4
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC---EEEee-ccchh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---FFSCS-GSEFE 264 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~---fi~vs-~s~l~ 264 (685)
...+++++.-.....+.+.+++...- ....++++.||+|+||||+++++..+..-. ++.+- ..++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 45577888766666566665555421 112379999999999999999999887433 33332 11111
Q ss_pred hh------Hh-hhhhHHHHHHHHHHHhCCCeEEEEcCchh
Q 005661 265 EM------FV-GVGARRVRDLFSAAKKRSPCIIFIDEIDA 297 (685)
Q Consensus 265 ~~------~~-g~~~~~ir~lF~~A~~~~P~ILfIDEID~ 297 (685)
-. +. ........+++..+....|.+|+|+|+..
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 00 00 01233566777788788999999999973
No 331
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.16 E-value=0.0053 Score=62.54 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh--------------hh-----------hhHHHHH
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV--------------GV-----------GARRVRD 277 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~--------------g~-----------~~~~ir~ 277 (685)
...-+++.|+||+|||+++..++.+. |.+.++++..+-.+.+. +. ....+..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 94 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTSLNR 94 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhhHHH
Confidence 33458999999999999999887543 66777776644322110 00 0000111
Q ss_pred ----HHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 278 ----LFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 278 ----lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
+........+..++||-+..+..- ..+.......+..++..+. . .++.++.+++
T Consensus 95 l~~~~~~~i~~~~~~~vVIDsls~l~~~--~~~~~~~r~~l~~l~~~lk---~-~~~tvll~s~ 152 (224)
T TIGR03880 95 IKNELPILIKELGASRVVIDPISLLETL--FDDDAERRTELFRFYSSLR---E-TGVTTILTSE 152 (224)
T ss_pred HHHHHHHHHHHhCCCEEEEcChHHHhhh--cCCHHHHHHHHHHHHHHHH---h-CCCEEEEEEc
Confidence 222234556789999999887211 1222334445566666554 2 3455555554
No 332
>PRK03839 putative kinase; Provisional
Probab=97.15 E-value=0.00035 Score=68.67 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=28.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
-|+|.|+||+||||+++.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999997654
No 333
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.15 E-value=0.0022 Score=69.21 Aligned_cols=114 Identities=13% Similarity=0.060 Sum_probs=65.1
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeeccch-hh-hHh------hhh---------------
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF-EE-MFV------GVG--------------- 271 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~s~l-~~-~~~------g~~--------------- 271 (685)
.....-++|+||||+|||+++-.++... +...++++..+- .. .+. |..
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCCC
Confidence 3444458899999999999999998653 336777776541 10 000 000
Q ss_pred ----hHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 272 ----ARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 272 ----~~~ir~lF~~A~~-~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
...+..+...... ..+.+|+||-|-++....... +....++.+.+++..|..+....++.+|.+..
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 0111222222333 467899999999986432111 22223444566666665555556777777654
No 334
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.13 E-value=0.00059 Score=67.00 Aligned_cols=27 Identities=41% Similarity=0.885 Sum_probs=22.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPF 255 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~f 255 (685)
.++|+|+||+||||+++.+...+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 38999999999999999999887 5553
No 335
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.12 E-value=0.004 Score=61.25 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=58.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh-Hh----------------hhhhHHHHHHHHHHHhCCCeEEEE
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FV----------------GVGARRVRDLFSAAKKRSPCIIFI 292 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~-~~----------------g~~~~~ir~lF~~A~~~~P~ILfI 292 (685)
+|++|+||+|||++|..++...+.+.+++....-.+. +. .+....+.+.+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887777777754432111 10 01112233333222 14679999
Q ss_pred cCchhhcCCCCCCch----HHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 293 DEIDAIGGSRNPKDQ----QYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 293 DEID~l~~~r~~~~~----~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
|-+..+...-..... ......+..|+..+.. .++-+|..+|.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~----~~~~~viVsnE 125 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN----KPGTLILVSNE 125 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc----CCCcEEEEECC
Confidence 999887643322111 2233445556655542 23344445664
No 336
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.11 E-value=0.0026 Score=69.32 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=62.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeeccc-hhhh-H------hhhh-------------------
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSE-FEEM-F------VGVG------------------- 271 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~s~-l~~~-~------~g~~------------------- 271 (685)
.-..|+||||||||.|+..+|-.. +...++++... |... . .|..
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~ 206 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQ 206 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHH
Confidence 347799999999999999886432 24567776543 1110 0 0000
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 272 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 272 ~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
...+..+-.......+.+|+||-|-++....... .....++.+.+++..|..+....++.||.+.
T Consensus 207 ~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 207 YNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 0112222223334568899999999986542211 1223445567777666665555666666653
No 337
>PF14516 AAA_35: AAA-like domain
Probab=97.11 E-value=0.036 Score=60.32 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=83.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-------Hhhh------------------------hhHH
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------FVGV------------------------GARR 274 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-------~~g~------------------------~~~~ 274 (685)
-+.+.||..+|||++...+.+.+ |...+.+++..+... +... ....
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 68999999999999999887655 778888887654221 1000 0112
Q ss_pred HHHHHHHH---HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc----CCCEEEEEec-CCcCcCcccc
Q 005661 275 VRDLFSAA---KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ----NEGIIVIAAT-NFPESLDKAL 346 (685)
Q Consensus 275 ir~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~----~~~ViVIaaT-N~p~~LD~aL 346 (685)
....|+.. ....|-||+|||||.+.... ......+ .+|+..-.-.. ...+.+|++. ..+......-
T Consensus 113 ~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~-~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~ 186 (331)
T PF14516_consen 113 CTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFF-GLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDIN 186 (331)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHH-HHHHHHHHhcccCcccceEEEEEecCcccccccCCC
Confidence 22333321 22468899999999997421 1111111 22222211111 1223333222 2222221112
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCC
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPG 394 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G 394 (685)
.+|-.+...|.++..+.++...+++.|-... ..-.++.|-..|.|
T Consensus 187 ~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~---~~~~~~~l~~~tgG 231 (331)
T PF14516_consen 187 QSPFNIGQPIELPDFTPEEVQELAQRYGLEF---SQEQLEQLMDWTGG 231 (331)
T ss_pred CCCcccccceeCCCCCHHHHHHHHHhhhccC---CHHHHHHHHHHHCC
Confidence 3444455567888889999888887774331 11125566666665
No 338
>PRK00625 shikimate kinase; Provisional
Probab=97.11 E-value=0.00046 Score=68.07 Aligned_cols=31 Identities=35% Similarity=0.653 Sum_probs=29.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
.|+|+|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 339
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0013 Score=64.54 Aligned_cols=32 Identities=31% Similarity=0.635 Sum_probs=29.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
+.++|+|++|+||||+.+++|+.++.+|+.++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998775
No 340
>PRK14974 cell division protein FtsY; Provisional
Probab=97.10 E-value=0.0034 Score=68.30 Aligned_cols=73 Identities=29% Similarity=0.369 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-------Hh---hh----------hhHHHHHHHHHH
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------FV---GV----------GARRVRDLFSAA 282 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-------~~---g~----------~~~~ir~lF~~A 282 (685)
.|.-++|+||||+||||++..+|..+ +..+..+++..+... +. |. ....+.+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46789999999999999888888755 555555655433210 00 10 012223334444
Q ss_pred HhCCCeEEEEcCchhh
Q 005661 283 KKRSPCIIFIDEIDAI 298 (685)
Q Consensus 283 ~~~~P~ILfIDEID~l 298 (685)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 4455568999988654
No 341
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.10 E-value=0.0016 Score=63.35 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcCC--CEEEeeccchhh--------hHhh-----hhhHHHHHHHHHHHhCCCeE
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFEE--------MFVG-----VGARRVRDLFSAAKKRSPCI 289 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs~s~l~~--------~~~g-----~~~~~ir~lF~~A~~~~P~I 289 (685)
.....+.|.||+|+|||+|.+.+++...- --+.+++..+.. ..++ .+..+.+-.+..+-...|.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 33445889999999999999999987521 112232222110 0010 01223444556666788999
Q ss_pred EEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 290 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 290 LfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
+++||-..-. +....+.+.+++.++. . .+..+|.+|+.++.+
T Consensus 104 lllDEP~~~L-------D~~~~~~l~~~l~~~~---~-~~~tiii~sh~~~~~ 145 (163)
T cd03216 104 LILDEPTAAL-------TPAEVERLFKVIRRLR---A-QGVAVIFISHRLDEV 145 (163)
T ss_pred EEEECCCcCC-------CHHHHHHHHHHHHHHH---H-CCCEEEEEeCCHHHH
Confidence 9999975322 2334445555655542 2 245666677765543
No 342
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.10 E-value=0.00047 Score=65.44 Aligned_cols=31 Identities=35% Similarity=0.693 Sum_probs=28.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
+|+|+|+||+|||++++.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988554
No 343
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.08 E-value=0.003 Score=67.78 Aligned_cols=114 Identities=15% Similarity=0.108 Sum_probs=64.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeeccc-hhhh-H------hhhhh--------------
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSE-FEEM-F------VGVGA-------------- 272 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~s~-l~~~-~------~g~~~-------------- 272 (685)
.....-++++||||+|||+++-.+|..+ +...++++..+ |... + .|...
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecCC
Confidence 3444457899999999999999988653 23677777655 2111 0 01000
Q ss_pred -----HHHHHHHHHHHhC--CCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 273 -----RRVRDLFSAAKKR--SPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 273 -----~~ir~lF~~A~~~--~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
..+..+....... .+.+|+||-|-++....... +....++.+++++..|..+....++.||.+..
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0122233333333 36799999998875432111 12223344566666665555556677766643
No 344
>PRK13946 shikimate kinase; Provisional
Probab=97.07 E-value=0.0015 Score=64.82 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
.++.|+|.|+||+|||++++.||+.+|.+|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3568999999999999999999999999998766
No 345
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.03 E-value=0.0036 Score=67.48 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=62.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeeccc-hhhh-Hh------hh----------------h--
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSE-FEEM-FV------GV----------------G-- 271 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~s~-l~~~-~~------g~----------------~-- 271 (685)
..-+.|+||||+|||+|+..++-.. +...++++... |... .. +. .
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~e~ 175 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEH 175 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCHHH
Confidence 3347899999999999998876422 34667776544 1110 00 00 0
Q ss_pred -hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 272 -ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 272 -~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
...+..+-.......+.+|+||-|-++....... .....++.+.+++..|..+....++.||.+.
T Consensus 176 ~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 176 QMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred HHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 0112222222334568899999999887532211 1223334466666666666555666666653
No 346
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.03 E-value=0.0051 Score=61.04 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=52.7
Q ss_pred EEEEcCCCCChHHHHHHHHH-----hcCCCE--------------EEeeccchhhhHhhhhhHHHHHHHHHHH-hCCCeE
Q 005661 230 VLLVGPPGTGKTMLARAIAG-----EAGVPF--------------FSCSGSEFEEMFVGVGARRVRDLFSAAK-KRSPCI 289 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~-----e~~~~f--------------i~vs~s~l~~~~~g~~~~~ir~lF~~A~-~~~P~I 289 (685)
++|+||.|+|||++.|.++- ..|.+. ..+...+......+.....++++-..+. ...|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 234322 1111111111111111222333222222 247899
Q ss_pred EEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 290 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 290 LfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
+++||...-. +..........++..+. ...+..+|.+|+..+
T Consensus 82 lllDEp~~g~------d~~~~~~~~~~~l~~l~---~~~~~~iii~TH~~~ 123 (185)
T smart00534 82 VLLDELGRGT------STYDGVAIAAAVLEYLL---EKIGALTLFATHYHE 123 (185)
T ss_pred EEEecCCCCC------CHHHHHHHHHHHHHHHH---hcCCCeEEEEecHHH
Confidence 9999986432 11222333344444432 222456777888764
No 347
>PRK13949 shikimate kinase; Provisional
Probab=97.03 E-value=0.00057 Score=67.03 Aligned_cols=31 Identities=42% Similarity=0.688 Sum_probs=29.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
.|+|+||||+|||++++.+|+.++.+|+.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6999999999999999999999999998766
No 348
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.02 E-value=0.0019 Score=65.20 Aligned_cols=124 Identities=26% Similarity=0.377 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHH
Q 005661 203 KQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAA 282 (685)
Q Consensus 203 k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A 282 (685)
+..|..+|....+| |.+....++|.|+-|+|||++.+.|+.+ ++.-+...... ...... .
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~------kd~~~~----l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDD------KDFLEQ----L 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCCC------cHHHHH----H
Confidence 45555555554444 5566667889999999999999999665 22111111110 111111 1
Q ss_pred HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH-hhcccc---------CCCEEEEEecCCcCcC-cccccCCCC
Q 005661 283 KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE-LDGFKQ---------NEGIIVIAATNFPESL-DKALVRPGR 351 (685)
Q Consensus 283 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~-ld~~~~---------~~~ViVIaaTN~p~~L-D~aLlRpgR 351 (685)
..+ -|+.|||++.+..+ ....+..++.. .+.++. ....++|+|||..+-| |+.--| |
T Consensus 94 ~~~--~iveldEl~~~~k~--------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--R 161 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK--------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--R 161 (198)
T ss_pred HHh--HheeHHHHhhcchh--------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--E
Confidence 111 39999999987521 12234444432 222221 2347889999998755 444555 7
Q ss_pred cccccccC
Q 005661 352 FDRHIVVP 359 (685)
Q Consensus 352 Fd~~I~i~ 359 (685)
|- .|.+.
T Consensus 162 f~-~v~v~ 168 (198)
T PF05272_consen 162 FW-PVEVS 168 (198)
T ss_pred EE-EEEEc
Confidence 73 44443
No 349
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.02 E-value=0.0046 Score=60.37 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.--++|+||+|+|||+|.|.+|.-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3359999999999999999999754
No 350
>PTZ00202 tuzin; Provisional
Probab=97.01 E-value=0.027 Score=62.94 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=50.3
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccc
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 262 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~ 262 (685)
.-.+.+|.+....+|.+++... ....|+-+.|+||+|+|||++++.+...++.+.+.++...
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 3568999999999998877632 2334567899999999999999999999998878777664
No 351
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.01 E-value=0.0047 Score=64.76 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
....++++||||||||+++-.++.+. |-+.++++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 33458999999999999999876532 5677766654
No 352
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.00 E-value=0.0024 Score=70.31 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhcC
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~ 252 (685)
.+|+||||+|||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 89999999999999999998663
No 353
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.00 E-value=0.00062 Score=66.86 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=27.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 265 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~ 265 (685)
|+++||||+||||+++.||...+.+. ++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 78999999999999999999998654 45555443
No 354
>PLN02200 adenylate kinase family protein
Probab=96.99 E-value=0.00089 Score=69.22 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=32.8
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 265 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~ 265 (685)
+.+.|.-+++.||||+||||+++.|+..+|.+ .++++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34556679999999999999999999999865 466666654
No 355
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.99 E-value=0.0021 Score=63.62 Aligned_cols=103 Identities=19% Similarity=0.175 Sum_probs=56.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCC--EEEeeccch---hhh-HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVP--FFSCSGSEF---EEM-FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGS 301 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~--fi~vs~s~l---~~~-~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~ 301 (685)
.-+.|.||.|+|||||.+.+++..... -+.+++..+ ... ... +..+.+-.+..+-...|.++++||--.-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LS-gGq~qrv~laral~~~p~lllLDEPts~L-- 102 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLS-GGELQRVAIAAALLRNATFYLFDEPSAYL-- 102 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCC-HHHHHHHHHHHHHhcCCCEEEEECCcccC--
Confidence 358899999999999999999865210 112222110 000 011 11233444555566789999999975322
Q ss_pred CCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc
Q 005661 302 RNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 341 (685)
Q Consensus 302 r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 341 (685)
+......+..++.++ ....+..+|.+|+..+.
T Consensus 103 -----D~~~~~~l~~~l~~~---~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 103 -----DIEQRLNAARAIRRL---SEEGKKTALVVEHDLAV 134 (177)
T ss_pred -----CHHHHHHHHHHHHHH---HHcCCCEEEEEECCHHH
Confidence 222333344444433 22232456667776543
No 356
>PRK14532 adenylate kinase; Provisional
Probab=96.98 E-value=0.00069 Score=67.04 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=29.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++|.||||+||||+++.||+..|.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999986665 44454443
No 357
>PTZ00035 Rad51 protein; Provisional
Probab=96.96 E-value=0.006 Score=66.52 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeeccch-hhhHh-------hh-----------------
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF-EEMFV-------GV----------------- 270 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~s~l-~~~~~-------g~----------------- 270 (685)
....-+.|+||||+|||+|+..++... +...++++...- ....+ +.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCCH
Confidence 333347899999999999999987543 234556665431 11000 00
Q ss_pred --hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEEe
Q 005661 271 --GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAA 335 (685)
Q Consensus 271 --~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 335 (685)
....+..+........+.+|+||-|-+++...... .....++.+.+++..|..+....++.||.+
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 00111122222234567899999999986532211 222344556677666666555566666654
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.002 Score=61.87 Aligned_cols=106 Identities=32% Similarity=0.390 Sum_probs=59.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCC--EEEeeccchhh-------hHhh-----hhhHHHHHHHHHHHhCCCeEEEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVP--FFSCSGSEFEE-------MFVG-----VGARRVRDLFSAAKKRSPCIIFI 292 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~--fi~vs~s~l~~-------~~~g-----~~~~~ir~lF~~A~~~~P~ILfI 292 (685)
..-+.|.||+|+|||+|.+++++..... -+.+++..+.. ..++ .+....+-.+..+-...|.++++
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3468999999999999999999876421 12333322111 0001 01122333345555667899999
Q ss_pred cCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 293 DEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 293 DEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
||...=. +......+.+++..+- .. +..+|.+|+..+.+.
T Consensus 105 DEp~~~l-------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 105 DEPTSGL-------DPASRERLLELLRELA---EE-GRTVIIVTHDPELAE 144 (157)
T ss_pred eCCCcCC-------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 9986432 1223334444444432 22 346677777665543
No 359
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.95 E-value=0.00078 Score=66.09 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 264 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~ 264 (685)
+-++|.|+||+||||+|+.++...+.+++.++...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~ 39 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH
Confidence 4689999999999999999999998888776655443
No 360
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.95 E-value=0.0038 Score=62.73 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAIAG 249 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~ 249 (685)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3599999999999999999983
No 361
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.0037 Score=62.73 Aligned_cols=22 Identities=45% Similarity=0.824 Sum_probs=21.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhc
Q 005661 230 VLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~ 251 (685)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999988
No 362
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.93 E-value=0.0049 Score=63.99 Aligned_cols=35 Identities=20% Similarity=0.458 Sum_probs=28.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchh
Q 005661 230 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 264 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~ 264 (685)
|+|+|+||+||||+|+.++..+ +.+++.++...+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 7899999999999999999877 5667777655443
No 363
>PRK06217 hypothetical protein; Validated
Probab=96.92 E-value=0.00082 Score=66.49 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=28.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
.|+|.|+||+||||+++.|++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987665
No 364
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.91 E-value=0.0067 Score=62.86 Aligned_cols=133 Identities=16% Similarity=0.208 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcCCC--EEEeeccchhh---hH-----hhh------hhH---HHHH-HHHHHH-
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAGVP--FFSCSGSEFEE---MF-----VGV------GAR---RVRD-LFSAAK- 283 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~~~--fi~vs~s~l~~---~~-----~g~------~~~---~ir~-lF~~A~- 283 (685)
..|-.+++.|++|||||++++.+....... .+.+-+..... .| +.. ... .... +-+..+
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 345579999999999999999998766332 12221111111 11 000 000 1111 111111
Q ss_pred --h---CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCccccccc
Q 005661 284 --K---RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVV 358 (685)
Q Consensus 284 --~---~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i 358 (685)
. ..+++|+||++.. + ......+.+++.. ...-++.+|..+...-.|++.++. -.+..+.+
T Consensus 91 ~~~~k~~~~~LiIlDD~~~---~------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~ 155 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD---K------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFIIF 155 (241)
T ss_pred hcccCCCCCeEEEEeCCCC---c------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEEEe
Confidence 1 2368999999742 1 1123345555532 234568888888888899998865 56655555
Q ss_pred CCCCHHHHHHHHHHH
Q 005661 359 PNPDVEGRRQIMESH 373 (685)
Q Consensus 359 ~~Pd~~eR~~ILk~~ 373 (685)
+ -+..++.-|++.+
T Consensus 156 ~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 156 N-NSKRDLENIYRNM 169 (241)
T ss_pred c-CcHHHHHHHHHhc
Confidence 4 4555555555544
No 365
>PRK04328 hypothetical protein; Provisional
Probab=96.91 E-value=0.012 Score=61.25 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=27.3
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHh---cCCCEEEeecc
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGE---AGVPFFSCSGS 261 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e---~~~~fi~vs~s 261 (685)
......+|++||||||||+|+..++.+ .|-+.++++..
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 333445899999999999998876543 25666666653
No 366
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.00075 Score=64.30 Aligned_cols=31 Identities=39% Similarity=0.764 Sum_probs=28.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
+||++|-||||||+++..||...+.+++.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 6999999999999999999999999888764
No 367
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.91 E-value=0.00082 Score=63.05 Aligned_cols=30 Identities=30% Similarity=0.760 Sum_probs=28.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
|.+.|+||+|||++|+.|+..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 368
>PRK14531 adenylate kinase; Provisional
Probab=96.90 E-value=0.00095 Score=66.07 Aligned_cols=30 Identities=33% Similarity=0.682 Sum_probs=26.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
+-++++||||+||||+++.||...|.+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 359999999999999999999999877654
No 369
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.89 E-value=0.0095 Score=72.74 Aligned_cols=150 Identities=18% Similarity=0.252 Sum_probs=80.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh---hH----h--------hh---h------------hHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE---MF----V--------GV---G------------ARRVRD 277 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~---~~----~--------g~---~------------~~~ir~ 277 (685)
+-++++||+|.|||+++...+...+ ++..++...-.+ .| . +. . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3599999999999999999887776 665555432110 01 0 00 0 011223
Q ss_pred HHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc-ccccCCCCcccc
Q 005661 278 LFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD-KALVRPGRFDRH 355 (685)
Q Consensus 278 lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD-~aLlRpgRFd~~ 355 (685)
++..... ..|.+|+|||++.+. .......+..|+..+ ..++.+|.++.....+. ..+...+ ..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~-------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~~---~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT-------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVRD---QL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC-------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhcC---cc
Confidence 3333332 678999999999772 122334455555432 34444444554321221 1111111 12
Q ss_pred cccC----CCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCC
Q 005661 356 IVVP----NPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGF 395 (685)
Q Consensus 356 I~i~----~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~ 395 (685)
+.+. ..+.++-.+++...+.... +.-+...+...|.|+
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~~~--~~~~~~~l~~~t~Gw 218 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSSPI--EAAESSRLCDDVEGW 218 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCCCC--CHHHHHHHHHHhCCh
Confidence 3444 5688888888876654321 223345667777764
No 370
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.89 E-value=0.0088 Score=60.26 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPF 255 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~f 255 (685)
|.-+++.|+||+|||++|+.++.+++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45689999999999999999999998765
No 371
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.89 E-value=0.0049 Score=58.70 Aligned_cols=101 Identities=23% Similarity=0.227 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCC--EEEeecc---chhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcC
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVP--FFSCSGS---EFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGG 300 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~--fi~vs~s---~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~ 300 (685)
....+.|.||+|+|||+|++++++..... -+.++.. .+...+. .+ ..-+-.+..+-...|.++++||-..=.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS-~G-~~~rv~laral~~~p~illlDEP~~~L- 101 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS-GG-EKMRLALAKLLLENPNLLLLDEPTNHL- 101 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC-HH-HHHHHHHHHHHhcCCCEEEEeCCccCC-
Confidence 33458899999999999999999876210 0111110 0000011 11 222333455556789999999975322
Q ss_pred CCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 301 SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 301 ~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
+......+.+++..+ +..+|.+|+.++.+
T Consensus 102 ------D~~~~~~l~~~l~~~-------~~til~~th~~~~~ 130 (144)
T cd03221 102 ------DLESIEALEEALKEY-------PGTVILVSHDRYFL 130 (144)
T ss_pred ------CHHHHHHHHHHHHHc-------CCEEEEEECCHHHH
Confidence 222334445555443 13567777765543
No 372
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.87 E-value=0.00093 Score=66.37 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=44.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCC--CEEEeec-cchhh---hH----------hhhhhHHHHHHHHHHHhCCCeEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSG-SEFEE---MF----------VGVGARRVRDLFSAAKKRSPCII 290 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs~-s~l~~---~~----------~g~~~~~ir~lF~~A~~~~P~IL 290 (685)
...++|.||+|+||||+++++++.... ..+.+.. .++.. .+ .+.......+++..+....|.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 447999999999999999999987631 1222211 01100 00 01112345666767777889999
Q ss_pred EEcCch
Q 005661 291 FIDEID 296 (685)
Q Consensus 291 fIDEID 296 (685)
+++|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999995
No 373
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.87 E-value=0.0033 Score=60.25 Aligned_cols=35 Identities=31% Similarity=0.649 Sum_probs=29.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchh
Q 005661 230 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 264 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~ 264 (685)
++|+|+||+|||++|+.++..+ +.+.+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 6899999999999999999988 6677777765544
No 374
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.87 E-value=0.0022 Score=69.98 Aligned_cols=68 Identities=22% Similarity=0.372 Sum_probs=43.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCC----CEEEee-ccchh---------hhHhhhhhHHHHHHHHHHHhCCCeEEEEcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGV----PFFSCS-GSEFE---------EMFVGVGARRVRDLFSAAKKRSPCIIFIDE 294 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~----~fi~vs-~s~l~---------~~~~g~~~~~ir~lF~~A~~~~P~ILfIDE 294 (685)
.+|++||+|+||||+.+++.+.+.- .++.+. ..++. ..-+|.........+..+....|.+|++||
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgE 203 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIGE 203 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEeC
Confidence 5899999999999999999886642 233221 11111 000122122345556666678999999999
Q ss_pred ch
Q 005661 295 ID 296 (685)
Q Consensus 295 ID 296 (685)
+.
T Consensus 204 ir 205 (343)
T TIGR01420 204 MR 205 (343)
T ss_pred CC
Confidence 85
No 375
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.87 E-value=0.00093 Score=66.02 Aligned_cols=33 Identities=39% Similarity=0.757 Sum_probs=27.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchh
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 264 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~ 264 (685)
|+|+||||+|||++++.||...+++++. ..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHH
Confidence 7999999999999999999999877654 44444
No 376
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.86 E-value=0.0012 Score=68.08 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
.|.-++|.||||+||||+|+.||+.++++++.+.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 3456999999999999999999999998777654
No 377
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.85 E-value=0.0042 Score=68.01 Aligned_cols=23 Identities=48% Similarity=0.657 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 378
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.85 E-value=0.00098 Score=63.32 Aligned_cols=33 Identities=30% Similarity=0.791 Sum_probs=27.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchh
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE 264 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~ 264 (685)
++|+|+||+||||+|+.++...+.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887665 444443
No 379
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.85 E-value=0.00086 Score=71.84 Aligned_cols=69 Identities=28% Similarity=0.381 Sum_probs=46.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC-----CCEEEee-ccchh-------hhHhhhhhHHHHHHHHHHHhCCCeEEEEcC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCS-GSEFE-------EMFVGVGARRVRDLFSAAKKRSPCIIFIDE 294 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~-----~~fi~vs-~s~l~-------~~~~g~~~~~ir~lF~~A~~~~P~ILfIDE 294 (685)
+++|++||+|+||||+++++.+... ..++.+- ..++. ............+++..+....|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4899999999999999999998762 2233221 11111 000111222566778888888999999999
Q ss_pred ch
Q 005661 295 ID 296 (685)
Q Consensus 295 ID 296 (685)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 86
No 380
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.84 E-value=0.0085 Score=61.14 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=27.5
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeec
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSG 260 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~ 260 (685)
|......++++||||+|||+++..++.+. +.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34444569999999999999999876432 556666664
No 381
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.83 E-value=0.0048 Score=61.05 Aligned_cols=104 Identities=17% Similarity=0.105 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCC-------------EEEeeccchhhh----------Hhhh--hhHHHHHHHHH
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVP-------------FFSCSGSEFEEM----------FVGV--GARRVRDLFSA 281 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~-------------fi~vs~s~l~~~----------~~g~--~~~~ir~lF~~ 281 (685)
..-+.|.||+|+|||||.+++....|.. +.++.-.++... .... +..+.+-.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lar 100 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLAS 100 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHH
Confidence 3348899999999999999997433221 111110001111 0000 11233444555
Q ss_pred HHhCC--CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc
Q 005661 282 AKKRS--PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 341 (685)
Q Consensus 282 A~~~~--P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 341 (685)
+-... |.++++||--.-. +......+.+++..+ .. .+..||.+|+.++.
T Consensus 101 al~~~~~p~llLlDEPt~~L-------D~~~~~~l~~~l~~~---~~-~g~tvIivSH~~~~ 151 (176)
T cd03238 101 ELFSEPPGTLFILDEPSTGL-------HQQDINQLLEVIKGL---ID-LGNTVILIEHNLDV 151 (176)
T ss_pred HHhhCCCCCEEEEeCCcccC-------CHHHHHHHHHHHHHH---Hh-CCCEEEEEeCCHHH
Confidence 55667 8999999975322 222333444444443 22 34567777776643
No 382
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.82 E-value=0.006 Score=69.74 Aligned_cols=78 Identities=24% Similarity=0.256 Sum_probs=53.6
Q ss_pred CCCCCC--eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhh---------------------------
Q 005661 223 GGKLPK--GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGV--------------------------- 270 (685)
Q Consensus 223 g~~~pk--gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~--------------------------- 270 (685)
|+-.|+ .+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+...
T Consensus 257 gGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 257 GGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred cCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccC
Confidence 344444 49999999999999999887755 6677777765543221110
Q ss_pred -hhHHHHHHHHHHHhCCCeEEEEcCchhhcC
Q 005661 271 -GARRVRDLFSAAKKRSPCIIFIDEIDAIGG 300 (685)
Q Consensus 271 -~~~~ir~lF~~A~~~~P~ILfIDEID~l~~ 300 (685)
....+..+.+......|.+|+||-+..+..
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 023445556666777899999999998853
No 383
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.81 E-value=0.0059 Score=72.76 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=63.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh---cCCCEEEeeccchhh-hH---hh------------hhhHHHHHHHHHHHhCCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE---AGVPFFSCSGSEFEE-MF---VG------------VGARRVRDLFSAAKKRSP 287 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e---~~~~fi~vs~s~l~~-~~---~g------------~~~~~ir~lF~~A~~~~P 287 (685)
...++|+||||||||+|+-.++.. .|...++++..+-.. .+ .| ..+..+..+-...+...+
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~ 139 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGAL 139 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 344889999999999999765443 366677776544211 00 01 011112222222345678
Q ss_pred eEEEEcCchhhcCC-CCC---C-c-hHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 288 CIIFIDEIDAIGGS-RNP---K-D-QQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 288 ~ILfIDEID~l~~~-r~~---~-~-~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
.+|+||-+.++..+ .-. . . .....+.++++|..|..+-...++.+|.|-
T Consensus 140 ~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 140 DIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred eEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99999999999852 111 1 1 112233445666666666566677777663
No 384
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.81 E-value=0.0062 Score=65.83 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc------C---CCEEEeeccch-hhh-H------hhhh---------------
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA------G---VPFFSCSGSEF-EEM-F------VGVG--------------- 271 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~------~---~~fi~vs~s~l-~~~-~------~g~~--------------- 271 (685)
.....-+.++||||+|||+|+..++..+ | ...++++..+. ... . .+..
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCC
Confidence 3334458899999999999999887532 1 25567766541 110 0 0000
Q ss_pred ----hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 272 ----ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 272 ----~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
...+..+........+.+|+||-|-+++...... .....+..+.+++..|..+....++.||.+.
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 0112222222334568899999999986432211 1122334566777777666555666766653
No 385
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.017 Score=64.47 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSE 262 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~ 262 (685)
+.-++|.||+|+||||++..+|... |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 4568899999999999999998754 44455555444
No 386
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.80 E-value=0.0058 Score=66.68 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeeccc-hh-----hhH--hhh-------------------
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSE-FE-----EMF--VGV------------------- 270 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~s~-l~-----~~~--~g~------------------- 270 (685)
..-++++|+||+|||+++..+|-.. +.+.++++... |. +.. .+.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~e~ 202 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDH 202 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCHHH
Confidence 3347899999999999999877432 23577776654 11 100 000
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 271 GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 271 ~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
....+..+........+.+|+||-|-++...... ......+..+.+++..|..+....++.||.+..
T Consensus 203 ~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 203 QSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred HHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 0011222222234557899999999998653211 122234455777777777666666777776643
No 387
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.80 E-value=0.0025 Score=69.24 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=46.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCC--CEEEe-eccchhh-----------hH--hhhhhHHHHHHHHHHHhCCCeEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSC-SGSEFEE-----------MF--VGVGARRVRDLFSAAKKRSPCII 290 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~--~fi~v-s~s~l~~-----------~~--~g~~~~~ir~lF~~A~~~~P~IL 290 (685)
.+++|++||+|+||||+++++.....- .++.+ +..++.- .. .+...-...+++..+....|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 458999999999999999999987742 22222 1111110 00 01112245678888888999999
Q ss_pred EEcCch
Q 005661 291 FIDEID 296 (685)
Q Consensus 291 fIDEID 296 (685)
++.|+.
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999986
No 388
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.79 E-value=0.001 Score=64.20 Aligned_cols=32 Identities=34% Similarity=0.707 Sum_probs=26.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccch
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 263 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l 263 (685)
++|.||||+||||+|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999987665 44444
No 389
>PRK14530 adenylate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=66.93 Aligned_cols=30 Identities=37% Similarity=0.633 Sum_probs=27.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.|+|.||||+||||+++.||+.++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999877654
No 390
>PRK13695 putative NTPase; Provisional
Probab=96.78 E-value=0.0095 Score=58.30 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-++|+|+||+|||+|++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987765
No 391
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.77 E-value=0.01 Score=60.05 Aligned_cols=126 Identities=23% Similarity=0.322 Sum_probs=75.3
Q ss_pred cCchhhhhhCCCCCCe--EEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhH---------------------
Q 005661 214 RDPKRFTRLGGKLPKG--VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF--------------------- 267 (685)
Q Consensus 214 ~~~~~~~~~g~~~pkg--vLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~--------------------- 267 (685)
.+.+.-+++|+-.|.| +++.|+.|||||.|.+.++.-+ +....+++...-...|
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~ 92 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLL 92 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeE
Confidence 3444456677777766 8899999999999999987633 3333333221100000
Q ss_pred ------------hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEe
Q 005661 268 ------------VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA 335 (685)
Q Consensus 268 ------------~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 335 (685)
.......+..+.+..+.....+|+||-++.+.... ....+.+++..+..+...++++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~~~~vl~fm~~~r~l~d~gKvIil-- 163 (235)
T COG2874 93 FFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------SEDAVLNFMTFLRKLSDLGKVIIL-- 163 (235)
T ss_pred EEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------cHHHHHHHHHHHHHHHhCCCEEEE--
Confidence 11122334555555566667899999999885321 233456666666666666655544
Q ss_pred cCCcCcCcccccC
Q 005661 336 TNFPESLDKALVR 348 (685)
Q Consensus 336 TN~p~~LD~aLlR 348 (685)
|-+|+.++++++-
T Consensus 164 Tvhp~~l~e~~~~ 176 (235)
T COG2874 164 TVHPSALDEDVLT 176 (235)
T ss_pred EeChhhcCHHHHH
Confidence 3457777776654
No 392
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.77 E-value=0.0015 Score=64.74 Aligned_cols=33 Identities=33% Similarity=0.705 Sum_probs=26.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccch
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 263 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l 263 (685)
.|+|.||||+||||+|+.|++.++ +..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHH
Confidence 489999999999999999999954 445553333
No 393
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.76 E-value=0.0015 Score=64.22 Aligned_cols=34 Identities=29% Similarity=0.695 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeec
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 260 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~ 260 (685)
++.|+|.||+|+|||++++.+++.++.+|+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3479999999999999999999999999987764
No 394
>PRK08233 hypothetical protein; Provisional
Probab=96.76 E-value=0.004 Score=60.74 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=26.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC-CCEEEeec
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG-VPFFSCSG 260 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~-~~fi~vs~ 260 (685)
.-|.+.|+||+||||+|+.|+..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3578899999999999999999885 44554443
No 395
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.76 E-value=0.003 Score=63.60 Aligned_cols=108 Identities=29% Similarity=0.417 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhh-------hH---hh----------hhhHHHHHHHHHHH
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE-------MF---VG----------VGARRVRDLFSAAK 283 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~-------~~---~g----------~~~~~ir~lF~~A~ 283 (685)
|+-++|+||+|+||||.+-.+|..+ +..+..+++..+.- .| .+ ......++.++..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6779999999999999888887655 44444444333211 01 11 01223445555565
Q ss_pred hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 284 KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 284 ~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
...-.+|+||-.... ..+. .....+..++..+ ....-++|+.++-..+.++
T Consensus 81 ~~~~D~vlIDT~Gr~-----~~d~-~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS-----PRDE-ELLEELKKLLEAL---NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS-----STHH-HHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc-----hhhH-HHHHHHHHHhhhc---CCccceEEEecccChHHHH
Confidence 555579999886522 2222 2222334444433 2333345555555555444
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.75 E-value=0.01 Score=59.56 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 005661 229 GVLLVGPPGTGKTMLARAIA 248 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA 248 (685)
.++|+||.|+|||+|.|.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 397
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.75 E-value=0.0082 Score=60.80 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=54.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHH-----hcCCCE------------E--Eeeccc-h---hhhHhhhhhHHHHHHHHHHHh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAG-----EAGVPF------------F--SCSGSE-F---EEMFVGVGARRVRDLFSAAKK 284 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~-----e~~~~f------------i--~vs~s~-l---~~~~~g~~~~~ir~lF~~A~~ 284 (685)
+-++|+||.|+|||++.+.++. .+|.++ + .+...+ . .+.|..+ -+.+..++.. .
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e-~~~~~~il~~--~ 106 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASE-MSETAYILDY--A 106 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHH-HHHHHHHHHh--c
Confidence 4699999999999999999874 334331 0 011111 0 0112111 1233334333 3
Q ss_pred CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 285 RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 285 ~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
..|.+++|||+..=. +..........++..+.. .+..+|.+|+..+..+
T Consensus 107 ~~~~lvllDE~~~gt------~~~~~~~l~~~il~~l~~----~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 107 DGDSLVLIDELGRGT------SSADGFAISLAILECLIK----KESTVFFATHFRDIAA 155 (204)
T ss_pred CCCcEEEeccccCCC------CHHHHHHHHHHHHHHHHh----cCCEEEEECChHHHHH
Confidence 568899999985311 111222223344444432 1557788898776544
No 398
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.74 E-value=0.0078 Score=74.06 Aligned_cols=179 Identities=21% Similarity=0.208 Sum_probs=98.8
Q ss_pred CCCCCeEEEEcCCCCChHHHH-HHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHH---Hh-----------CCCe
Q 005661 224 GKLPKGVLLVGPPGTGKTMLA-RAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAA---KK-----------RSPC 288 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LA-ralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A---~~-----------~~P~ 288 (685)
....++++++||||+|||+|. -++-.+.-..++.+|.+.-... ...++-+-+.. .. -.--
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T-----~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMT-----PSKLSVLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCC-----HHHHHHHHhhceeeccCCeEEEccCcchhhe
Confidence 344568999999999999964 5777788788888876643211 11111111111 00 0114
Q ss_pred EEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc--------CCCEEEEEecCCcCcCcccccCCCCccc---ccc
Q 005661 289 IIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ--------NEGIIVIAATNFPESLDKALVRPGRFDR---HIV 357 (685)
Q Consensus 289 ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~--------~~~ViVIaaTN~p~~LD~aLlRpgRFd~---~I~ 357 (685)
|||.|||. +...+... .+..--.+.+|+ +-.||.. -.++++.+++|.+...- ..--|.||-+ .++
T Consensus 1566 VLFcDeIn-Lp~~~~y~-~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~g-Rv~~~eRf~r~~v~vf 1641 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYY-PPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEG-RVKYYERFIRKPVFVF 1641 (3164)
T ss_pred EEEeeccC-CccccccC-CCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcc-cCccHHHHhcCceEEE
Confidence 99999999 43222111 111111112222 2244433 25799999999876432 0111223333 457
Q ss_pred cCCCCHHHHHHHHHHHhhhhcccC-c------------ccHH-H-------HHhcCCCCCHHHHHHHHHHHHHHH
Q 005661 358 VPNPDVEGRRQIMESHMSKVLKAD-D------------VDLM-I-------IARGTPGFSGADLANLVNIAALKA 411 (685)
Q Consensus 358 i~~Pd~~eR~~ILk~~l~~~~~~~-~------------vdl~-~-------la~~t~G~sgadI~~lv~~A~~~A 411 (685)
+..|.......|...++.+..+-. + +.+- . .....-||+|+||...++-....|
T Consensus 1642 ~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ya 1716 (3164)
T COG5245 1642 CCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYA 1716 (3164)
T ss_pred ecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHH
Confidence 789999999999988876542211 1 1110 0 111225799999999987444333
No 399
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.014 Score=60.41 Aligned_cols=139 Identities=11% Similarity=0.034 Sum_probs=95.9
Q ss_pred CCCeEEEEcCCC-CChHHHHHHHHHhcCC---------CEEEeeccchhhh-HhhhhhHHHHHHHHHHH----hCCCeEE
Q 005661 226 LPKGVLLVGPPG-TGKTMLARAIAGEAGV---------PFFSCSGSEFEEM-FVGVGARRVRDLFSAAK----KRSPCII 290 (685)
Q Consensus 226 ~pkgvLL~GPPG-TGKT~LAralA~e~~~---------~fi~vs~s~l~~~-~~g~~~~~ir~lF~~A~----~~~P~IL 290 (685)
+-...||.|..+ +||..++..++..+-. .++.+....-... -...+...+|++-+.+. ....-|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 344799999998 9999999888776632 1222221110000 00123455666655543 2344799
Q ss_pred EEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHH
Q 005661 291 FIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIM 370 (685)
Q Consensus 291 fIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~IL 370 (685)
+||++|.+. ....|.||..++ +++.++++|..|+.++.+.|.+++ |+. .+.++.|+...-.++.
T Consensus 94 II~~ae~mt-----------~~AANALLKtLE--EPP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~~e~~ 157 (263)
T PRK06581 94 IIYSAELMN-----------LNAANSCLKILE--DAPKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAYNELY 157 (263)
T ss_pred EEechHHhC-----------HHHHHHHHHhhc--CCCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHHHHHH
Confidence 999999883 456788998888 466788888888889999999988 774 7889999998888888
Q ss_pred HHHhhhhccc
Q 005661 371 ESHMSKVLKA 380 (685)
Q Consensus 371 k~~l~~~~~~ 380 (685)
...+......
T Consensus 158 ~~~~~p~~~~ 167 (263)
T PRK06581 158 SQFIQPIADN 167 (263)
T ss_pred HHhccccccc
Confidence 7777655433
No 400
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.73 E-value=0.018 Score=56.08 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=27.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccch
Q 005661 230 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEF 263 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l 263 (685)
++++||||+|||+++..++..+ +..+..+++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6899999999999999998765 666777776643
No 401
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.0042 Score=60.83 Aligned_cols=103 Identities=24% Similarity=0.333 Sum_probs=56.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCC--CEEEeeccch---------------hh--hHhh---------hhhHHHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEF---------------EE--MFVG---------VGARRVRDLF 279 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs~s~l---------------~~--~~~g---------~~~~~ir~lF 279 (685)
..+.|.||+|+|||+|.+.+++...- --+.+++..+ .+ .+.+ .+..+.|-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~l 106 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLAL 106 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHH
Confidence 35889999999999999999986510 0011111100 00 0011 0112233345
Q ss_pred HHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc
Q 005661 280 SAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 341 (685)
Q Consensus 280 ~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 341 (685)
..+-...|.++++||-..-. +......+.+++..+. .. +..+|.+|+.++.
T Consensus 107 aral~~~p~illlDEPt~~L-------D~~~~~~l~~~l~~~~---~~-g~tiii~th~~~~ 157 (173)
T cd03230 107 AQALLHDPELLILDEPTSGL-------DPESRREFWELLRELK---KE-GKTILLSSHILEE 157 (173)
T ss_pred HHHHHcCCCEEEEeCCccCC-------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHH
Confidence 55666789999999976432 2233444555554442 22 3466677776543
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.02 Score=63.34 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchh----hh---Hh
Q 005661 200 DEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE----EM---FV 268 (685)
Q Consensus 200 de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~----~~---~~ 268 (685)
+++++.+.+.+.. +..+.. ....|+-++|.||+|+||||++..||..+ +..+..+++..+. +. |.
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~----~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENV----FEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhccccc----cccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 4555555554433 332211 12336789999999999999999998766 4455555554332 11 10
Q ss_pred ---------hhhhHHHHHHHHHHHh-CCCeEEEEcCchh
Q 005661 269 ---------GVGARRVRDLFSAAKK-RSPCIIFIDEIDA 297 (685)
Q Consensus 269 ---------g~~~~~ir~lF~~A~~-~~P~ILfIDEID~ 297 (685)
......+......++. ....+||||-...
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccc
Confidence 1122334444544443 2356999997654
No 403
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.72 E-value=0.0041 Score=66.92 Aligned_cols=36 Identities=33% Similarity=0.618 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
..++..|+|+|+||+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 445667999999999999999999999999999544
No 404
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.72 E-value=0.0057 Score=60.37 Aligned_cols=72 Identities=28% Similarity=0.390 Sum_probs=41.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhc-------------CCCEEEeeccchh----hhHh---h----------h---------
Q 005661 230 VLLVGPPGTGKTMLARAIAGEA-------------GVPFFSCSGSEFE----EMFV---G----------V--------- 270 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~-------------~~~fi~vs~s~l~----~~~~---g----------~--------- 270 (685)
++|+||||+|||+++-.++..+ +.++++++...-. ..+. + .
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCIR 114 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccce
Confidence 8899999999999999887644 2366666654321 1000 0 0
Q ss_pred ----------hhHHHHHHHHHHHh-CCCeEEEEcCchhhcCC
Q 005661 271 ----------GARRVRDLFSAAKK-RSPCIIFIDEIDAIGGS 301 (685)
Q Consensus 271 ----------~~~~ir~lF~~A~~-~~P~ILfIDEID~l~~~ 301 (685)
....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 115 LFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp --TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01123445555555 57899999999999765
No 405
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.71 E-value=0.0016 Score=63.25 Aligned_cols=31 Identities=35% Similarity=0.555 Sum_probs=28.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
.++|+|+||+|||++++.+|+.+|.+|+..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5899999999999999999999999998654
No 406
>PRK06547 hypothetical protein; Provisional
Probab=96.71 E-value=0.0017 Score=63.97 Aligned_cols=35 Identities=34% Similarity=0.420 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
..+.-|++.|++|+|||++++.+++.++++++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 44567899999999999999999999998877553
No 407
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.69 E-value=0.004 Score=67.50 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=53.3
Q ss_pred CC-cCCCcHHHHHHHHHHHHHhcCchhhhhhCCC-CCCeEEEEcCCCCChHHHHHHHHHhcC-CCEEEeeccchhhhHhh
Q 005661 193 FS-DVKGVDEAKQELEEIVHYLRDPKRFTRLGGK-LPKGVLLVGPPGTGKTMLARAIAGEAG-VPFFSCSGSEFEEMFVG 269 (685)
Q Consensus 193 f~-dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~-~pkgvLL~GPPGTGKT~LAralA~e~~-~~fi~vs~s~l~~~~~g 269 (685)
|+ ++-|.++.++ ++|++++...+ |.. -.+-++|.||+|+|||+|++.|.+-+. .+++.+..+-..+...+
T Consensus 59 f~~~~~G~~~~i~---~lV~~fk~AA~----g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 59 FEDEFYGMEETIE---RLVNYFKSAAQ----GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred ccccccCcHHHHH---HHHHHHHHHHh----ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 55 8999998855 55555544322 222 334688999999999999999988773 46666655544443334
Q ss_pred hhhHHHHHHHHH
Q 005661 270 VGARRVRDLFSA 281 (685)
Q Consensus 270 ~~~~~ir~lF~~ 281 (685)
.....+|..|..
T Consensus 132 L~P~~~r~~~~~ 143 (358)
T PF08298_consen 132 LFPKELRREFED 143 (358)
T ss_pred hCCHhHHHHHHH
Confidence 445556666544
No 408
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.68 E-value=0.019 Score=59.25 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHHh
Q 005661 230 VLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e 250 (685)
.+|+||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999988753
No 409
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.67 E-value=0.0074 Score=59.28 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCC--CEEEeeccchhh------h---H----------------hhh--hhHHHH
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFEE------M---F----------------VGV--GARRVR 276 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs~s~l~~------~---~----------------~g~--~~~~ir 276 (685)
....+.|.||+|+|||+|++.+++.... --+.+++..+.. . | ... +..+.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHH
Confidence 3445899999999999999999987521 112222221100 0 0 000 012233
Q ss_pred HHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 277 DLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 277 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
-.+..+-...|.++++||-..-. +......+.+++..+. . +..+|.+|+.++.+
T Consensus 107 v~laral~~~p~~lllDEP~~~L-------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 160 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGL-------DPITERQLLSLIFEVL---K--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccC-------CHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 34555556789999999976432 2234445556655542 2 34666677766543
No 410
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0015 Score=63.24 Aligned_cols=28 Identities=39% Similarity=0.713 Sum_probs=26.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
|-+.|||||||||+|+-||+.+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5689999999999999999999999875
No 411
>PRK14528 adenylate kinase; Provisional
Probab=96.64 E-value=0.0018 Score=64.38 Aligned_cols=30 Identities=30% Similarity=0.696 Sum_probs=27.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.+++.||||+|||++++.+++..+++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999887654
No 412
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.64 E-value=0.0075 Score=63.81 Aligned_cols=72 Identities=24% Similarity=0.411 Sum_probs=46.2
Q ss_pred CCCe-EEEEcCCCCChHHHHHHHHHhcCC----CEEEe---------eccchhh-hHhhhhhHHHHHHHHHHHhCCCeEE
Q 005661 226 LPKG-VLLVGPPGTGKTMLARAIAGEAGV----PFFSC---------SGSEFEE-MFVGVGARRVRDLFSAAKKRSPCII 290 (685)
Q Consensus 226 ~pkg-vLL~GPPGTGKT~LAralA~e~~~----~fi~v---------s~s~l~~-~~~g~~~~~ir~lF~~A~~~~P~IL 290 (685)
.|+| ||.+||.|+||||..-++..+.+. +++.+ |-..+.. .-+|..-......++.|-...|+||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 3556 777899999999999999887753 23322 2112211 1233333344455556667789999
Q ss_pred EEcCchh
Q 005661 291 FIDEIDA 297 (685)
Q Consensus 291 fIDEID~ 297 (685)
++-|+-.
T Consensus 203 lvGEmRD 209 (353)
T COG2805 203 LVGEMRD 209 (353)
T ss_pred EEecccc
Confidence 9999864
No 413
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.63 E-value=0.017 Score=65.98 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHh----cCCCEEEeeccc
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGE----AGVPFFSCSGSE 262 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e----~~~~fi~vs~s~ 262 (685)
|......+|++||||||||+||..++.+ .|-+.++++..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3444456999999999999999987432 267877777653
No 414
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.63 E-value=0.0036 Score=61.24 Aligned_cols=103 Identities=28% Similarity=0.405 Sum_probs=57.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCC--CEEEeeccchh----------------hh--Hhh-------hhhHHHHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFE----------------EM--FVG-------VGARRVRDLFS 280 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs~s~l~----------------~~--~~g-------~~~~~ir~lF~ 280 (685)
.-+.|.||+|+|||+|.+.|++.... --+.+++..+. +. +.+ .+..+-|-.+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la 108 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLA 108 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHH
Confidence 34889999999999999999986521 01112211110 00 000 01122344455
Q ss_pred HHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc
Q 005661 281 AAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 341 (685)
Q Consensus 281 ~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 341 (685)
.+-...|.++++||--.-. +......+.+++..+. . .+..+|.+|+..+.
T Consensus 109 ~al~~~p~~lllDEPt~~L-------D~~~~~~l~~~l~~~~---~-~~~tii~~sh~~~~ 158 (173)
T cd03246 109 RALYGNPRILVLDEPNSHL-------DVEGERALNQAIAALK---A-AGATRIVIAHRPET 158 (173)
T ss_pred HHHhcCCCEEEEECCcccc-------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHH
Confidence 6666789999999965332 2233444555555442 2 24566777776543
No 415
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.61 E-value=0.0068 Score=63.37 Aligned_cols=29 Identities=38% Similarity=0.708 Sum_probs=23.4
Q ss_pred CCCCCCe--EEEEcCCCCChHHHHHHHHHhc
Q 005661 223 GGKLPKG--VLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 223 g~~~pkg--vLL~GPPGTGKT~LAralA~e~ 251 (685)
....|+| +-|.||.|+|||||.|++++-+
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3444444 7899999999999999999855
No 416
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.61 E-value=0.011 Score=57.22 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHH
Q 005661 227 PKGVLLVGPPGTGKTMLARAIA 248 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA 248 (685)
|+..+++||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999974
No 417
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.61 E-value=0.007 Score=75.01 Aligned_cols=134 Identities=22% Similarity=0.328 Sum_probs=91.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh--Hhhhhh-------HHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--FVGVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIG 299 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~--~~g~~~-------~~ir~lF~~A~~~~P~ILfIDEID~l~ 299 (685)
.+||-||..+|||.....+|++.|..|+.++-.+..+. |.|.-. .--..++-.|... ..-|++||+.--.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~-GyWIVLDELNLAp 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR-GYWIVLDELNLAP 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-CcEEEeeccccCc
Confidence 59999999999999999999999999999998776543 554311 1112233333222 2488999997432
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhc---------cccCCCEEEEEecCCcC------cCcccccCCCCcccccccCCCCHH
Q 005661 300 GSRNPKDQQYMKMTLNQLLVELDG---------FKQNEGIIVIAATNFPE------SLDKALVRPGRFDRHIVVPNPDVE 364 (685)
Q Consensus 300 ~~r~~~~~~~~~~~l~~LL~~ld~---------~~~~~~ViVIaaTN~p~------~LD~aLlRpgRFd~~I~i~~Pd~~ 364 (685)
...-..+|.||..-.. ..+.+++.+++|-|.|- .|..|++. ||- .++|..-..+
T Consensus 969 --------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFddiped 1037 (4600)
T COG5271 969 --------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFDDIPED 1037 (4600)
T ss_pred --------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcccCcHH
Confidence 2355667777643211 13456788888889775 46778877 884 6777777778
Q ss_pred HHHHHHHHHh
Q 005661 365 GRRQIMESHM 374 (685)
Q Consensus 365 eR~~ILk~~l 374 (685)
+...||+..+
T Consensus 1038 Ele~ILh~rc 1047 (4600)
T COG5271 1038 ELEEILHGRC 1047 (4600)
T ss_pred HHHHHHhccC
Confidence 8888877654
No 418
>PRK13764 ATPase; Provisional
Probab=96.61 E-value=0.0029 Score=73.56 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=41.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC---CCEEEe-eccchh-----hhHhhhhhHHHHHHHHHHHhCCCeEEEEcCch
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSC-SGSEFE-----EMFVGVGARRVRDLFSAAKKRSPCIIFIDEID 296 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~---~~fi~v-s~s~l~-----~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID 296 (685)
.+++|++||||+||||++++++..+. ..+..+ +..++. ..|... ..........+....|.+|++||+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCC
Confidence 45899999999999999999998774 222222 111111 111000 0011222233345679999999986
No 419
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.60 E-value=0.025 Score=61.17 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 200 DEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 200 de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
+.+++.+.+.+.. +......-......|.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 86 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 86 EELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred HHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4455556544443 431111011222346678999999999999999998866 4455555544
No 420
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0042 Score=60.71 Aligned_cols=105 Identities=24% Similarity=0.356 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCC--EEEeeccchhh------------------hHhh------h-hhHHHHHH
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVP--FFSCSGSEFEE------------------MFVG------V-GARRVRDL 278 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~--fi~vs~s~l~~------------------~~~g------~-~~~~ir~l 278 (685)
...-+.|.||+|+|||+|.+.+++..... -+.+++..+.. .+.. . +..+-+-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~ 106 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIA 106 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHH
Confidence 33458999999999999999999875210 11122211100 0000 0 01122233
Q ss_pred HHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 279 FSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 279 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
+..+-...|.+|++||--+-. +......+.+++..+. . +..+|.+|+.++.+
T Consensus 107 la~al~~~p~llllDEP~~gL-------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 107 IARALLRDPPILILDEATSAL-------DPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCC-------CHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 445556789999999965322 2223444555555442 2 35677778876554
No 421
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.58 E-value=0.0029 Score=68.03 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=46.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCC--CEEEee-ccchhh---hH---------hhhhhHHHHHHHHHHHhCCCe
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCS-GSEFEE---MF---------VGVGARRVRDLFSAAKKRSPC 288 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs-~s~l~~---~~---------~g~~~~~ir~lF~~A~~~~P~ 288 (685)
.....++++.||+|+||||+++++.+...- ..+.+. ..++.- .. .+...-.+.+++..+....|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 344558999999999999999999987732 122221 111100 00 011122356677777788999
Q ss_pred EEEEcCch
Q 005661 289 IIFIDEID 296 (685)
Q Consensus 289 ILfIDEID 296 (685)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999987
No 422
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.58 E-value=0.0019 Score=63.41 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=25.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
-+++.||||+||||+++.+++.+|.+.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998665433
No 423
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.58 E-value=0.016 Score=59.60 Aligned_cols=104 Identities=17% Similarity=0.148 Sum_probs=55.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc-----CCCE--------------EEeeccchhhh---HhhhhhHHHHHHHHHHHhC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA-----GVPF--------------FSCSGSEFEEM---FVGVGARRVRDLFSAAKKR 285 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~-----~~~f--------------i~vs~s~l~~~---~~g~~~~~ir~lF~~A~~~ 285 (685)
.-++|.||.|+|||++.+.++.-. |.+. ..+...+-... ....--..+..+++.+ .
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~--~ 109 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNC--T 109 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhC--C
Confidence 458999999999999999998721 3211 11111111110 1111223455555544 3
Q ss_pred CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 286 SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 286 ~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
.+.+++|||+..=. +..........++..+. ...+..+|.+|...+..
T Consensus 110 ~~sLvllDE~~~gT------~~~d~~~i~~~il~~l~---~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 110 SRSLVILDELGRGT------STHDGIAIAYATLHYLL---EEKKCLVLFVTHYPSLG 157 (222)
T ss_pred CCeEEEEccCCCCC------ChhhHHHHHHHHHHHHH---hccCCeEEEEcccHHHH
Confidence 57899999986321 11111122233333332 22456788899987654
No 424
>PRK14527 adenylate kinase; Provisional
Probab=96.57 E-value=0.002 Score=64.12 Aligned_cols=32 Identities=41% Similarity=0.624 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
.|+-++++||||+||||+|+.++...+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 45679999999999999999999999876544
No 425
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.57 E-value=0.0095 Score=58.04 Aligned_cols=101 Identities=32% Similarity=0.412 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCC-----------CEEEeecc------chhhhH----hhh--hhHHHHHHHHHH
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGV-----------PFFSCSGS------EFEEMF----VGV--GARRVRDLFSAA 282 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~-----------~fi~vs~s------~l~~~~----~g~--~~~~ir~lF~~A 282 (685)
...-+.|.||+|+|||+|++.+++.... .+.++.-. ...+.. ... +..+.|-.+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 3445899999999999999999987521 01111100 011110 000 112334445556
Q ss_pred HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 283 KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 283 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
-...|.++++||-..-. +......+.+++..+ +..+|.+|++++
T Consensus 106 l~~~p~~lllDEPt~~L-------D~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 106 LLHKPKFVFLDEATSAL-------DEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHcCCCEEEEECCcccc-------CHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 66789999999976432 222344445555443 245667777654
No 426
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.56 E-value=0.0075 Score=59.42 Aligned_cols=106 Identities=25% Similarity=0.357 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCC--CEEEeeccchh--------hh--Hh-------hh------------hhHHH
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFE--------EM--FV-------GV------------GARRV 275 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs~s~l~--------~~--~~-------g~------------~~~~i 275 (685)
..-+.|.||+|+|||+|.+.+++.... =-+.+++..+. .. |+ |. +..+-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q 104 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ 104 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 345889999999999999999986521 11222222110 00 00 00 01122
Q ss_pred HHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 276 RDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 276 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
+-.+..+-...|.++++||--.=. +......+.+++..+. ...+..+|.+|+.++.+
T Consensus 105 rl~laral~~~p~llllDEP~~~L-------D~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHL-------DIAHQIELLELLRRLA---RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCC-------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 233444556789999999965322 2223444555555442 22245667777766543
No 427
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.56 E-value=0.0048 Score=71.29 Aligned_cols=54 Identities=26% Similarity=0.264 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 275 VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 275 ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
-|-.|...--++|.++||||.-.-. ++..+..+.++++. .-.++.||..+.++.
T Consensus 522 QRlafARilL~kP~~v~LDEATsAL-------De~~e~~l~q~l~~-----~lp~~tvISV~Hr~t 575 (604)
T COG4178 522 QRLAFARLLLHKPKWVFLDEATSAL-------DEETEDRLYQLLKE-----ELPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHHHcCCCEEEEecchhcc-------ChHHHHHHHHHHHh-----hCCCCEEEEeccchh
Confidence 3445666667899999999985432 34455566666643 235678888888764
No 428
>PRK10867 signal recognition particle protein; Provisional
Probab=96.56 E-value=0.028 Score=63.19 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=48.1
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccchhhh----H------hh----------hhhHHHHHHH
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEM----F------VG----------VGARRVRDLF 279 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~l~~~----~------~g----------~~~~~ir~lF 279 (685)
...|.-++++||+|+||||++-.+|..+ |..+..+++..+... + .| ......++..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457789999999999999777777643 666777776644321 0 00 1122334455
Q ss_pred HHHHhCCCeEEEEcCchhh
Q 005661 280 SAAKKRSPCIIFIDEIDAI 298 (685)
Q Consensus 280 ~~A~~~~P~ILfIDEID~l 298 (685)
..++.....+|+||=...+
T Consensus 177 ~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHhcCCCEEEEeCCCCc
Confidence 5566666779999887644
No 429
>PRK02496 adk adenylate kinase; Provisional
Probab=96.55 E-value=0.002 Score=63.53 Aligned_cols=30 Identities=33% Similarity=0.655 Sum_probs=26.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
-+++.||||+|||++++.|+..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998776654
No 430
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.55 E-value=0.016 Score=61.10 Aligned_cols=91 Identities=23% Similarity=0.305 Sum_probs=60.7
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhH
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGAR 273 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~ 273 (685)
=+++-.+++.+.+-.+.+-|+.|.- ++||.|.+|+||++++|..|.-.+..++.+..+.-.. ...-..
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~~~~G----------h~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~ 75 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLSQPRG----------HALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKE 75 (268)
T ss_dssp ------HHHHHHHHHHHHHHCSTTE----------EEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHH
T ss_pred cceeeHHHHHHHHHHHHHHHcCCCC----------CeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHH
Confidence 3677788888888888887776542 6999999999999999999999999999887553211 122234
Q ss_pred HHHHHHHHHH-hCCCeEEEEcCch
Q 005661 274 RVRDLFSAAK-KRSPCIIFIDEID 296 (685)
Q Consensus 274 ~ir~lF~~A~-~~~P~ILfIDEID 296 (685)
.++.++..|. ++.|.+++|+|-+
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHHhccCCCeEEEecCcc
Confidence 5666666664 4568888887743
No 431
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.55 E-value=0.0021 Score=65.05 Aligned_cols=29 Identities=45% Similarity=0.844 Sum_probs=26.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
|+|.||||+||||+|+.||...|++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998776654
No 432
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.54 E-value=0.0059 Score=64.28 Aligned_cols=92 Identities=18% Similarity=0.266 Sum_probs=56.6
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCC-eEEEEcCCCCChHHHHHHHHHhcC---CCEEEee-ccchhh
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK-GVLLVGPPGTGKTMLARAIAGEAG---VPFFSCS-GSEFEE 265 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pk-gvLL~GPPGTGKT~LAralA~e~~---~~fi~vs-~s~l~~ 265 (685)
.+++++.-..+..+.|++++. . ++ .+++.||+|+||||+++++..... ..++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~-----------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---K-----------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---c-----------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 357777666666665655443 1 22 489999999999999999977663 2344331 112110
Q ss_pred h------HhhhhhHHHHHHHHHHHhCCCeEEEEcCch
Q 005661 266 M------FVGVGARRVRDLFSAAKKRSPCIIFIDEID 296 (685)
Q Consensus 266 ~------~~g~~~~~ir~lF~~A~~~~P~ILfIDEID 296 (685)
. ...............+....|.+|+++|+.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 0 000111234566666777889999999996
No 433
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.54 E-value=0.0038 Score=64.13 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=25.8
Q ss_pred hhhhCCCCCCe--EEEEcCCCCChHHHHHHHHHhc
Q 005661 219 FTRLGGKLPKG--VLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 219 ~~~~g~~~pkg--vLL~GPPGTGKT~LAralA~e~ 251 (685)
+..+..+.|+| +-+.||+|||||+|.|.+.+.+
T Consensus 24 ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 34445566666 6689999999999999998755
No 434
>PRK06696 uridine kinase; Validated
Probab=96.53 E-value=0.0052 Score=62.81 Aligned_cols=40 Identities=33% Similarity=0.470 Sum_probs=33.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhh
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 265 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~ 265 (685)
.|.-|.+.|+||+||||+|+.|+..+ |.+++.++..+|..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 45678999999999999999999988 77888877777653
No 435
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.53 E-value=0.0047 Score=67.33 Aligned_cols=28 Identities=54% Similarity=0.770 Sum_probs=22.9
Q ss_pred CCCCCCe--EEEEcCCCCChHHHHHHHHHh
Q 005661 223 GGKLPKG--VLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 223 g~~~pkg--vLL~GPPGTGKT~LAralA~e 250 (685)
..+..+| +-|.||+||||||+.|.||+-
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3445555 669999999999999999983
No 436
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.52 E-value=0.0026 Score=69.45 Aligned_cols=71 Identities=24% Similarity=0.402 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCC--CEEEee-ccchhh---h-----H----hhhhhHHHHHHHHHHHhCCCeEE
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCS-GSEFEE---M-----F----VGVGARRVRDLFSAAKKRSPCII 290 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs-~s~l~~---~-----~----~g~~~~~ir~lF~~A~~~~P~IL 290 (685)
..+++|+.||+|+||||+++++...... .++.+- ..++.- . + .+...-...+++..+....|..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 3458999999999999999999987743 222211 111110 0 0 01122345677888888899999
Q ss_pred EEcCch
Q 005661 291 FIDEID 296 (685)
Q Consensus 291 fIDEID 296 (685)
++.|+-
T Consensus 241 ivGEiR 246 (344)
T PRK13851 241 LLGEMR 246 (344)
T ss_pred EEEeeC
Confidence 999986
No 437
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.51 E-value=0.0037 Score=63.23 Aligned_cols=138 Identities=24% Similarity=0.292 Sum_probs=65.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh-HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCch
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ 307 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~-~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 307 (685)
-++|+||+|||||.+|-++|+..|.|++..+.-..... .+|.+ +....-+ ..-+ =+||||-.--- +.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sg-rp~~~el----~~~~-RiyL~~r~l~~------G~ 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSG-RPTPSEL----KGTR-RIYLDDRPLSD------GI 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SGGG----TT-E-EEES----GGG-------S
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccC-CCCHHHH----cccc-eeeeccccccC------CC
Confidence 37899999999999999999999999999987655443 22322 1111101 1112 37788644221 11
Q ss_pred HHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccC---CCCccc-ccccCCCCHHHHHHHHHHHhhhhccc
Q 005661 308 QYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVR---PGRFDR-HIVVPNPDVEGRRQIMESHMSKVLKA 380 (685)
Q Consensus 308 ~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlR---pgRFd~-~I~i~~Pd~~eR~~ILk~~l~~~~~~ 380 (685)
-........|+..++.+....++|+=+.+.. .|..-... ...|.. +..++.||.+.-..-.+...+++...
T Consensus 71 i~a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p 145 (233)
T PF01745_consen 71 INAEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRP 145 (233)
T ss_dssp --HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS-
T ss_pred cCHHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCC
Confidence 1233345566666777776555555554431 11111111 013333 33668899888777777777666443
No 438
>PRK04040 adenylate kinase; Provisional
Probab=96.51 E-value=0.0025 Score=63.67 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc--CCCEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA--GVPFF 256 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~--~~~fi 256 (685)
|+-++++|+||+||||+++.++..+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5679999999999999999999999 55554
No 439
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.50 E-value=0.016 Score=55.82 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCChHH-HHHHHHHhcC----CCEEEeec
Q 005661 228 KGVLLVGPPGTGKTM-LARAIAGEAG----VPFFSCSG 260 (685)
Q Consensus 228 kgvLL~GPPGTGKT~-LAralA~e~~----~~fi~vs~ 260 (685)
+.+++.||+|||||+ ++..+..... ..++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 479999999999999 5555555442 33555544
No 440
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.49 E-value=0.0065 Score=65.91 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=32.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 265 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~ 265 (685)
.+.+.|.|+||+|||||++.|++..+.+++.-.+.++..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~ 200 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVE 200 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHH
Confidence 347999999999999999999999999987666554443
No 441
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.49 E-value=0.0073 Score=60.56 Aligned_cols=42 Identities=31% Similarity=0.584 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc-CCCEEEeeccchhhh
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCSGSEFEEM 266 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~-~~~fi~vs~s~l~~~ 266 (685)
..|.-+++.|+||+|||+++..+...+ +..++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 567889999999999999999999988 778899998887554
No 442
>PF13245 AAA_19: Part of AAA domain
Probab=96.49 E-value=0.004 Score=53.04 Aligned_cols=32 Identities=41% Similarity=0.525 Sum_probs=21.9
Q ss_pred eEEEEcCCCCChH-HHHHHHHHhc------CCCEEEeec
Q 005661 229 GVLLVGPPGTGKT-MLARAIAGEA------GVPFFSCSG 260 (685)
Q Consensus 229 gvLL~GPPGTGKT-~LAralA~e~------~~~fi~vs~ 260 (685)
-+++.|||||||| ++++.++... +..++.+..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 3566999999999 6666666655 445555543
No 443
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.49 E-value=0.01 Score=63.11 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc----C-CCEEEeeccc
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA----G-VPFFSCSGSE 262 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~----~-~~fi~vs~s~ 262 (685)
.++.++|+||+|+||||++..||..+ | ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 45679999999999999999998755 3 5666666554
No 444
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.48 E-value=0.0026 Score=64.62 Aligned_cols=29 Identities=45% Similarity=0.841 Sum_probs=26.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
|+++||||+|||++++.||..++++.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999998766653
No 445
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.46 E-value=0.0069 Score=59.28 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcC---CCEEEeeccch
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSEF 263 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~---~~fi~vs~s~l 263 (685)
..|.-++|.|+||+||||+++.+++.+. ...+.++...+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 3566799999999999999999999885 23455555444
No 446
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.44 E-value=0.0073 Score=64.21 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 265 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~ 265 (685)
++-++|.|+|||||||+|+.|+..+. .++.++...+..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHH
Confidence 34688999999999999999999983 344555555443
No 447
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.43 E-value=0.017 Score=57.52 Aligned_cols=32 Identities=44% Similarity=0.786 Sum_probs=26.0
Q ss_pred hhhCCCCCCe--EEEEcCCCCChHHHHHHHHHhc
Q 005661 220 TRLGGKLPKG--VLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 220 ~~~g~~~pkg--vLL~GPPGTGKT~LAralA~e~ 251 (685)
..+..+.++| ++|+||+|.||||+.|.|..+.
T Consensus 19 ~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 19 RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3445566666 8899999999999999998765
No 448
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.42 E-value=0.086 Score=56.84 Aligned_cols=95 Identities=25% Similarity=0.352 Sum_probs=52.1
Q ss_pred CCeEEEEcCchhhcCCCCCCc------hHHHHHHHHHHHHHhhcccc-CCCEEE--EEecCC---cC--cCcccccCC-C
Q 005661 286 SPCIIFIDEIDAIGGSRNPKD------QQYMKMTLNQLLVELDGFKQ-NEGIIV--IAATNF---PE--SLDKALVRP-G 350 (685)
Q Consensus 286 ~P~ILfIDEID~l~~~r~~~~------~~~~~~~l~~LL~~ld~~~~-~~~ViV--IaaTN~---p~--~LD~aLlRp-g 350 (685)
.|.++-||++.++...-.-.+ +...-.....|+..+.+-.. ..+.+| +++|.. +. .++.+|... +
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 588999999999987532211 12222333444433332222 334444 555542 22 345454431 1
Q ss_pred -----Ccc-------------cccccCCCCHHHHHHHHHHHhhhhccc
Q 005661 351 -----RFD-------------RHIVVPNPDVEGRRQIMESHMSKVLKA 380 (685)
Q Consensus 351 -----RFd-------------~~I~i~~Pd~~eR~~ILk~~l~~~~~~ 380 (685)
-|. ..|.++..+.+|-..+++.+.......
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~ 283 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLR 283 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccc
Confidence 111 156888899999999999888765443
No 449
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.42 E-value=0.027 Score=59.56 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccc
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 262 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~ 262 (685)
...|+-++|+||+|+||||++..+|..+ |..+..+++..
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3456778999999999999999988765 55555555543
No 450
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.41 E-value=0.023 Score=56.36 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=27.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
|.|+|.+|+|||++++.++...+.+++ ++..+...
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~ 36 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQ 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHH
Confidence 679999999999999999998767765 44555443
No 451
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.41 E-value=0.012 Score=61.78 Aligned_cols=108 Identities=21% Similarity=0.159 Sum_probs=63.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhcC---------CCEEEeeccc-hhhh--------Hhhh------------------hhH
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAG---------VPFFSCSGSE-FEEM--------FVGV------------------GAR 273 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~---------~~fi~vs~s~-l~~~--------~~g~------------------~~~ 273 (685)
.=|+||||+|||.|+-.+|-... ...++++... |... +.-. -..
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 33899999999999998875542 3467776543 2111 0000 001
Q ss_pred HHHHHHHHHHhCCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 274 RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 274 ~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
.+..+-.......-.+|+||-|-+++..... .+.......+..++..|..+....++.||.|..
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNq 186 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQ 186 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeece
Confidence 1222222233456689999999998753211 223445667777777777777777777775544
No 452
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.0095 Score=58.57 Aligned_cols=24 Identities=50% Similarity=0.782 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-+.|.||+|+|||+|++.+++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999764
No 453
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.41 E-value=0.0057 Score=68.88 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=60.0
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCe-EEEEcCCCCChHHHHHHHHHhcCCCEEEe-eccchhhh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKG-VLLVGPPGTGKTMLARAIAGEAGVPFFSC-SGSEFEEM 266 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkg-vLL~GPPGTGKT~LAralA~e~~~~fi~v-s~s~l~~~ 266 (685)
...+|++++........+.+++. .|.| +|++||.|+|||+...++..+++-+...+ +..+=++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 45678888888777776666554 3556 66789999999999999999886554422 22221111
Q ss_pred -Hhhh--------hhHHHHHHHHHHHhCCCeEEEEcCchh
Q 005661 267 -FVGV--------GARRVRDLFSAAKKRSPCIIFIDEIDA 297 (685)
Q Consensus 267 -~~g~--------~~~~ir~lF~~A~~~~P~ILfIDEID~ 297 (685)
..|. ..-.....++..-.+.|+||++.||-.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 0010 001123344445578899999999963
No 454
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.39 E-value=0.005 Score=62.37 Aligned_cols=21 Identities=43% Similarity=0.925 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q 005661 229 GVLLVGPPGTGKTMLARAIAG 249 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~ 249 (685)
-+.|+||+|+|||||.|+|-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 389999999999999999975
No 455
>PRK13808 adenylate kinase; Provisional
Probab=96.39 E-value=0.0098 Score=64.51 Aligned_cols=29 Identities=34% Similarity=0.685 Sum_probs=25.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
|+|+||||+|||++++.|+..++++.+.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 89999999999999999999998755544
No 456
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.38 E-value=0.0025 Score=58.13 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=21.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhc
Q 005661 230 VLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~ 251 (685)
|+|.|+|||||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 457
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.38 E-value=0.015 Score=69.63 Aligned_cols=100 Identities=25% Similarity=0.354 Sum_probs=56.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---C--CCEEEeeccchhhh----HhhhhhHHHHHHHHHH----------HhCCCeE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---G--VPFFSCSGSEFEEM----FVGVGARRVRDLFSAA----------KKRSPCI 289 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~--~~fi~vs~s~l~~~----~~g~~~~~ir~lF~~A----------~~~~P~I 289 (685)
-++|.|+||||||++++++...+ + .+++.+..+.-... ..|..+..+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999986644 4 44444433211111 1122223333333221 0123579
Q ss_pred EEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 290 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 290 LfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
|+|||+..+. ...+..|+..+ .....+++++-.+....+
T Consensus 420 lIvDEaSMvd-----------~~~~~~Ll~~~---~~~~rlilvGD~~QLpsV 458 (720)
T TIGR01448 420 LIVDESSMMD-----------TWLALSLLAAL---PDHARLLLVGDTDQLPSV 458 (720)
T ss_pred EEEeccccCC-----------HHHHHHHHHhC---CCCCEEEEECccccccCC
Confidence 9999998762 22345555433 345567888866654433
No 458
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.38 E-value=0.0057 Score=66.20 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=46.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEee-ccchhhh------HhhhhhHHHHHHHHHHHhCCCeEEEEcC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCS-GSEFEEM------FVGVGARRVRDLFSAAKKRSPCIIFIDE 294 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs-~s~l~~~------~~g~~~~~ir~lF~~A~~~~P~ILfIDE 294 (685)
.+++|++|++|+||||+++++.... +..++.+- ..++.-. +.....-...+++..+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 3489999999999999999999875 22233321 1121100 0011122356777777788999999999
Q ss_pred ch
Q 005661 295 ID 296 (685)
Q Consensus 295 ID 296 (685)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 85
No 459
>PRK01184 hypothetical protein; Provisional
Probab=96.38 E-value=0.003 Score=62.24 Aligned_cols=29 Identities=38% Similarity=0.641 Sum_probs=25.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
-|+|+||||+||||+++ ++++.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788999888655
No 460
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.38 E-value=0.0093 Score=65.99 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=21.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-++|+||||+|||+|++.+++...
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc
Confidence 399999999999999999999754
No 461
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.35 E-value=0.0094 Score=59.88 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=29.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
-+.|+|++|+|||++++.++...|.+++ ++.++...
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~ 38 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYARE 38 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHH
Confidence 4889999999999999999998888877 45555443
No 462
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.35 E-value=0.04 Score=63.40 Aligned_cols=111 Identities=19% Similarity=0.187 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccchhhhHh------hh-----------------------
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEMFV------GV----------------------- 270 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~l~~~~~------g~----------------------- 270 (685)
.....-+||+|+||+|||+|+..++.+. |-+.++++..+-.+.+. |.
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~ 107 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQ 107 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccc
Confidence 3334459999999999999999775432 56777776654322110 00
Q ss_pred -------hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 271 -------GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 271 -------~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
....+..+-+......|..|+||-+..+...- .........+..++..+. ..++.+|.+++...
T Consensus 108 ~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~--d~~~~~r~~l~~L~~~Lk----~~g~TvLlt~~~~~ 178 (509)
T PRK09302 108 EEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGF--SNEAVVRRELRRLFAWLK----QKGVTAVITGERGD 178 (509)
T ss_pred cccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhc--cCHHHHHHHHHHHHHHHH----hCCCEEEEEECCcc
Confidence 01112233334456678899999999874321 111222344555555443 23556666666543
No 463
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.33 E-value=0.015 Score=56.88 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 264 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~ 264 (685)
+.-+.|.|+||+|||++++.++..+ +..+..+++..+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4468999999999999999999887 4456666665543
No 464
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0029 Score=61.90 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=26.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
-++++|.|||||||+++.|+ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 9998887665
No 465
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.32 E-value=0.006 Score=67.27 Aligned_cols=68 Identities=26% Similarity=0.347 Sum_probs=43.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC-----CCEEEee-ccchh-----------hhHhhhhhHHHHHHHHHHHhCCCeEEE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCS-GSEFE-----------EMFVGVGARRVRDLFSAAKKRSPCIIF 291 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~-----~~fi~vs-~s~l~-----------~~~~g~~~~~ir~lF~~A~~~~P~ILf 291 (685)
.+|++||+|+||||+++++..... ..++.+- ..++. ..-+|............+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 489999999999999999987762 2344331 11111 011122222345566667678999999
Q ss_pred EcCch
Q 005661 292 IDEID 296 (685)
Q Consensus 292 IDEID 296 (685)
++|+.
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99996
No 466
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.32 E-value=0.013 Score=58.51 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.....+.|.||+|+|||+|.+.|++..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334469999999999999999999976
No 467
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.31 E-value=0.0028 Score=60.50 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=26.5
Q ss_pred EEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 232 LVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 232 L~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
|.||||+|||++++.||.+.|. ..++..++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHH
Confidence 6899999999999999999975 45565565544
No 468
>PRK04182 cytidylate kinase; Provisional
Probab=96.29 E-value=0.0037 Score=60.77 Aligned_cols=29 Identities=41% Similarity=0.722 Sum_probs=26.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
-|+|.|+||+|||++++.||..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998875
No 469
>PHA00012 I assembly protein
Probab=96.27 E-value=0.012 Score=63.26 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=63.1
Q ss_pred EEEEcCCCCChHHHHHH-HHHhc--CCCEEEeeccchhhhHh--hhhhH-----------HHHHHHHHHHh------CCC
Q 005661 230 VLLVGPPGTGKTMLARA-IAGEA--GVPFFSCSGSEFEEMFV--GVGAR-----------RVRDLFSAAKK------RSP 287 (685)
Q Consensus 230 vLL~GPPGTGKT~LAra-lA~e~--~~~fi~vs~s~l~~~~~--g~~~~-----------~ir~lF~~A~~------~~P 287 (685)
-+++|-||+|||+.|-. |...+ |. .+..|..-..+++. |..++ ..+++....+. ...
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr-~VaTNidL~le~~p~~g~~a~~~~~iripDkP~~~dl~~~G~~n~~ydep~g 82 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGC-IVATNLNLRLHHLPQVGRFAKQPRVMRIPDKPTLEDLEAIGRGNLSYDESKN 82 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCC-EEEeCCccchhhccccCccccCcceEeccCCCcHHHHHhhccccccCCCCCC
Confidence 57899999999987653 22222 43 34444433333331 11110 12333222222 234
Q ss_pred eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCccccc
Q 005661 288 CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALV 347 (685)
Q Consensus 288 ~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLl 347 (685)
++++|||.+.+++.|..+... .....+.+.. ....++-+|.+|..|..+|..++
T Consensus 83 sLlVlDEaq~~fp~R~~~sk~--p~~vie~l~~----hRh~G~DvilITQ~ps~VDs~IR 136 (361)
T PHA00012 83 GLLVLDECGTWFNSRSWNDKE--RQPVIDWFLH----ARKLGWDIIFIIQDISIMDKQAR 136 (361)
T ss_pred cEEEEECcccccCCCCcCcCC--cHHHHHHHHH----hccCCceEEEEcCCHHHHhHHHH
Confidence 799999999999888755321 1111222221 24567888889999999998775
No 470
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.019 Score=59.95 Aligned_cols=55 Identities=25% Similarity=0.243 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc
Q 005661 276 RDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 341 (685)
Q Consensus 276 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 341 (685)
|-++..|-...|.+|+|||--. +-+...+..+.+||.++. .. +..|++.|.+...
T Consensus 147 RV~lARAL~~~p~lllLDEP~~-------gvD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL~~ 201 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFT-------GVDVAGQKEIYDLLKELR---QE-GKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcc-------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCcHH
Confidence 4455566677899999999431 112334556667766654 33 7788888887654
No 471
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.028 Score=61.92 Aligned_cols=74 Identities=23% Similarity=0.401 Sum_probs=56.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc--CCCEEEeeccchhhhHh------h--------hhhHHHHHHHHHHHhCCCeEEEE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA--GVPFFSCSGSEFEEMFV------G--------VGARRVRDLFSAAKKRSPCIIFI 292 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~--~~~fi~vs~s~l~~~~~------g--------~~~~~ir~lF~~A~~~~P~ILfI 292 (685)
-+||-|.||.|||||.--++..+ ..+++++++.+-..... | ..+.++.++.+.+...+|.+++|
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 47888999999999888776655 23899999877544321 1 12345778888888899999999
Q ss_pred cCchhhcCCC
Q 005661 293 DEIDAIGGSR 302 (685)
Q Consensus 293 DEID~l~~~r 302 (685)
|-|..+....
T Consensus 175 DSIQT~~s~~ 184 (456)
T COG1066 175 DSIQTLYSEE 184 (456)
T ss_pred eccceeeccc
Confidence 9999997654
No 472
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.25 E-value=0.013 Score=66.89 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=57.3
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCe-EEEEcCCCCChHHHHHHHHHhcC---CCEEEeec-cchh
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKG-VLLVGPPGTGKTMLARAIAGEAG---VPFFSCSG-SEFE 264 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkg-vLL~GPPGTGKT~LAralA~e~~---~~fi~vs~-s~l~ 264 (685)
..+|+++.-.++..+.++.++. .|.| +|++||+|+||||+..++..++. ..++.+-- -++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 3567787767777666665543 2345 78999999999999998877664 33444321 1111
Q ss_pred hh-----Hhhh-hhHHHHHHHHHHHhCCCeEEEEcCch
Q 005661 265 EM-----FVGV-GARRVRDLFSAAKKRSPCIIFIDEID 296 (685)
Q Consensus 265 ~~-----~~g~-~~~~ir~lF~~A~~~~P~ILfIDEID 296 (685)
-. .+.. ...........+....|.+|++.|+.
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 0000 01123345555667889999999996
No 473
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.016 Score=61.56 Aligned_cols=23 Identities=52% Similarity=0.768 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+-|.||+|+||||+.|.||+-.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcC
Confidence 37899999999999999999844
No 474
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.24 E-value=0.019 Score=60.07 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=27.1
Q ss_pred hhhCCCCCCe--EEEEcCCCCChHHHHHHHHHhc
Q 005661 220 TRLGGKLPKG--VLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 220 ~~~g~~~pkg--vLL~GPPGTGKT~LAralA~e~ 251 (685)
+.+..+.|+| +.+.||.|.||||+.|.+.+.+
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll 74 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL 74 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc
Confidence 3456778887 8899999999999999998755
No 475
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.22 E-value=0.022 Score=56.16 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=27.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
|.|+|+||+||||+++.+++ .|++++. +..+...
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~--~D~~~~~ 35 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID--ADKIAHE 35 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe--cCHHHHh
Confidence 68999999999999999998 7877654 4455443
No 476
>PLN02674 adenylate kinase
Probab=96.22 E-value=0.0055 Score=63.73 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE 265 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~ 265 (685)
+.+..++|.||||+||+|+++.||...+++.+ +..++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHH
Confidence 33457999999999999999999999986554 4444443
No 477
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.22 E-value=0.028 Score=64.60 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh------hh----------------------hh
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV------GV----------------------GA 272 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~------g~----------------------~~ 272 (685)
......++++||||+|||+++..++.+. |.+.++++..+-.+.+. |. ..
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 349 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE 349 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence 3334458899999999999999887644 67777776543222110 00 01
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 273 RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 273 ~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
..+..+........+.+++||-+..+.... ......+.+..|+..+ ...++.+|.+..
T Consensus 350 ~~~~~i~~~i~~~~~~~vVIDslt~l~~~~---~~~~~~~~l~~l~~~~----k~~~~t~l~t~~ 407 (509)
T PRK09302 350 DHLIIIKREIEEFKPSRVAIDPLSALARGG---SLNEFRQFVIRLTDYL----KSEEITGLFTNL 407 (509)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHHhC---CHHHHHHHHHHHHHHH----HhCCCeEEEEec
Confidence 122233334456678899999999885321 1222233334444333 334556665543
No 478
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.22 E-value=0.038 Score=62.00 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=46.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-------H--------hh-----hhhHHHHHHHHH
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------F--------VG-----VGARRVRDLFSA 281 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-------~--------~g-----~~~~~ir~lF~~ 281 (685)
..|.-++|+||+|+||||++..||..+ |..+..+++..+... | .. ......++.+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346779999999999999999998766 666666666543210 0 00 011223445555
Q ss_pred HHhCCCeEEEEcCchh
Q 005661 282 AKKRSPCIIFIDEIDA 297 (685)
Q Consensus 282 A~~~~P~ILfIDEID~ 297 (685)
++.....+||||=...
T Consensus 178 ~~~~~~DvViIDTaGr 193 (429)
T TIGR01425 178 FKKENFDIIIVDTSGR 193 (429)
T ss_pred HHhCCCCEEEEECCCC
Confidence 6555567999887653
No 479
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.21 E-value=0.021 Score=62.84 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 200 DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 200 de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
+++++.+..+++.+.+ ..|..+++.||.|||||++.++|...+.
T Consensus 4 ~eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 4566666666554432 3466899999999999999999987763
No 480
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.21 E-value=0.013 Score=59.48 Aligned_cols=23 Identities=57% Similarity=0.654 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.+.||+|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998655
No 481
>PLN02199 shikimate kinase
Probab=96.18 E-value=0.0093 Score=63.50 Aligned_cols=32 Identities=34% Similarity=0.719 Sum_probs=29.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
++|+|+|.+|+|||++++.+|+.+|++|+..+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 47999999999999999999999999998765
No 482
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.17 E-value=0.059 Score=60.61 Aligned_cols=74 Identities=23% Similarity=0.320 Sum_probs=47.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccchhhh-------H---hh----------hhhHHHHHHHH
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEM-------F---VG----------VGARRVRDLFS 280 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~l~~~-------~---~g----------~~~~~ir~lF~ 280 (685)
..|.-++++||+|+||||++..+|..+ |..+..++|..+... + .+ .......+.+.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 457789999999999999988887653 566777777644321 0 00 01122345555
Q ss_pred HHHhCCCeEEEEcCchhh
Q 005661 281 AAKKRSPCIIFIDEIDAI 298 (685)
Q Consensus 281 ~A~~~~P~ILfIDEID~l 298 (685)
.+......+|+||=...+
T Consensus 177 ~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHhcCCCEEEEeCCCcc
Confidence 565566678998876543
No 483
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.17 E-value=0.051 Score=56.24 Aligned_cols=105 Identities=20% Similarity=0.268 Sum_probs=56.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc-----CCCE--------------EEeeccc-hhh--hHhhhhhHHHHHHHHHHHh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA-----GVPF--------------FSCSGSE-FEE--MFVGVGARRVRDLFSAAKK 284 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~-----~~~f--------------i~vs~s~-l~~--~~~g~~~~~ir~lF~~A~~ 284 (685)
.+.++|+||..+|||++.|.++-.. |.++ ..+...+ +.. .....--..+..++..+.
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~- 121 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNAT- 121 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH---
T ss_pred eeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcc-
Confidence 3579999999999999999987532 3211 1111111 111 012222345666776654
Q ss_pred CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 285 RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 285 ~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
..++|+|||+..= ....+.......++..+. ...+..+|.+|+..+..
T Consensus 122 -~~sLvliDE~g~g------T~~~eg~ai~~aile~l~---~~~~~~~i~~TH~~~l~ 169 (235)
T PF00488_consen 122 -EKSLVLIDELGRG------TNPEEGIAIAIAILEYLL---EKSGCFVIIATHFHELA 169 (235)
T ss_dssp -TTEEEEEESTTTT------SSHHHHHHHHHHHHHHHH---HTTT-EEEEEES-GGGG
T ss_pred -cceeeecccccCC------CChhHHHHHHHHHHHHHH---HhccccEEEEeccchhH
Confidence 4579999998632 222233333444444443 22356788899987643
No 484
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.17 E-value=0.014 Score=57.58 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
...+.|.||+|+|||||.+.|++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999865
No 485
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.16 E-value=0.0048 Score=59.56 Aligned_cols=29 Identities=34% Similarity=0.724 Sum_probs=26.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
|.|+|++|+|||++|+.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887654
No 486
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.15 E-value=0.011 Score=65.79 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeec
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 260 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~ 260 (685)
...+.|.|.|++|||||||+++|+...|.+.+.--+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~ 252 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYG 252 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeecc
Confidence 445679999999999999999999999888655433
No 487
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.15 E-value=0.027 Score=50.94 Aligned_cols=21 Identities=38% Similarity=0.787 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHHHh
Q 005661 230 VLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e 250 (685)
|+|.|+||+|||+|.++|.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 488
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.13 E-value=0.0058 Score=50.76 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=23.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhc-CCCEEEe
Q 005661 230 VLLVGPPGTGKTMLARAIAGEA-GVPFFSC 258 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~-~~~fi~v 258 (685)
+.+.|+||+|||++++.++..+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 6789999999999999999985 2344433
No 489
>PF13479 AAA_24: AAA domain
Probab=96.12 E-value=0.0086 Score=60.88 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=39.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCE-EEeeccc--hhh----h-HhhhhhHHHHHHHHHH--HhCCCeEEEEcCch
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPF-FSCSGSE--FEE----M-FVGVGARRVRDLFSAA--KKRSPCIIFIDEID 296 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~f-i~vs~s~--l~~----~-~~g~~~~~ir~lF~~A--~~~~P~ILfIDEID 296 (685)
|..++||||||+|||++|..+ +.|+ +.+.... +.. . +.-.+-..+.+.+..+ ....-.+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 446999999999999999988 3333 2222221 100 0 0001223344444433 23345799999998
Q ss_pred hh
Q 005661 297 AI 298 (685)
Q Consensus 297 ~l 298 (685)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 76
No 490
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.11 E-value=0.0096 Score=64.43 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=45.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEe-eccchh---hh---HhhhhhHHHHHHHHHHHhCCCeEEEEcC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSC-SGSEFE---EM---FVGVGARRVRDLFSAAKKRSPCIIFIDE 294 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~v-s~s~l~---~~---~~g~~~~~ir~lF~~A~~~~P~ILfIDE 294 (685)
.++++++|++|+|||+++++++... ...++.+ +..++. .. +.........+++..+....|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3589999999999999999999863 1222222 111211 00 1011122467788888889999999999
Q ss_pred ch
Q 005661 295 ID 296 (685)
Q Consensus 295 ID 296 (685)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 86
No 491
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.11 E-value=0.0038 Score=60.33 Aligned_cols=30 Identities=37% Similarity=0.626 Sum_probs=22.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeec
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 260 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~ 260 (685)
|.|+|+||||||||++.|+.. |.+++.-.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~a 31 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYA 31 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TT
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecH
Confidence 789999999999999999998 888774433
No 492
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.10 E-value=0.038 Score=56.73 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
-+-|.||+|||||||...++.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4889999999999999999863
No 493
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.09 E-value=0.016 Score=56.24 Aligned_cols=40 Identities=30% Similarity=0.465 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM 266 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~ 266 (685)
|..|+|+|.||+|||++|++|...+ |.+.+.+++..+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 3468999999999999999999876 889999998876543
No 494
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.03 E-value=0.016 Score=60.72 Aligned_cols=73 Identities=27% Similarity=0.293 Sum_probs=44.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCC--EEEeeccch--------hh-----------------hHhhh--hhHHHHH
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVP--FFSCSGSEF--------EE-----------------MFVGV--GARRVRD 277 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~--fi~vs~s~l--------~~-----------------~~~g~--~~~~ir~ 277 (685)
...+-|.|++||||||++|.+.+-..-. -+.+.+.++ .+ .|..+ +..+-|-
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi 118 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRI 118 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhH
Confidence 3468899999999999999999866311 122222211 11 11111 1233344
Q ss_pred HHHHHHhCCCeEEEEcCchhhc
Q 005661 278 LFSAAKKRSPCIIFIDEIDAIG 299 (685)
Q Consensus 278 lF~~A~~~~P~ILfIDEID~l~ 299 (685)
.+..|....|.+|+.||.-+..
T Consensus 119 ~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 119 GIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred HHHHHHhhCCcEEEecCchhhc
Confidence 4555666789999999988664
No 495
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.034 Score=55.35 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e 250 (685)
..-+.|.||+|+|||||++.+++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999974
No 496
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.012 Score=58.84 Aligned_cols=29 Identities=38% Similarity=0.454 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
++....-+.+.||+|||||||...+|+-.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 33444469999999999999999999855
No 497
>PRK14526 adenylate kinase; Provisional
Probab=96.01 E-value=0.0062 Score=62.04 Aligned_cols=29 Identities=31% Similarity=0.660 Sum_probs=25.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
.++|.||||+||||+++.||+..+.+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 37899999999999999999999866544
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.00 E-value=0.025 Score=62.22 Aligned_cols=68 Identities=24% Similarity=0.263 Sum_probs=40.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC------CCEEEee-ccchhhh------------HhhhhhHHHHHHHHHHHhCCCeE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG------VPFFSCS-GSEFEEM------------FVGVGARRVRDLFSAAKKRSPCI 289 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~------~~fi~vs-~s~l~~~------------~~g~~~~~ir~lF~~A~~~~P~I 289 (685)
.++++||+|+||||+++++++.+. ..++.+. .-++.-. -++............+....|.+
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd~ 215 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPHA 215 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCCE
Confidence 489999999999999999998762 2232221 1111100 00111112344444566678999
Q ss_pred EEEcCch
Q 005661 290 IFIDEID 296 (685)
Q Consensus 290 LfIDEID 296 (685)
+++.|+.
T Consensus 216 i~vGEiR 222 (358)
T TIGR02524 216 ILVGEAR 222 (358)
T ss_pred EeeeeeC
Confidence 9999975
No 499
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.051 Score=62.30 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
....+.|+||+|+||||++..|+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998754
No 500
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.058 Score=57.23 Aligned_cols=116 Identities=21% Similarity=0.266 Sum_probs=68.5
Q ss_pred hCCCCCCeEE--EEcCCCCChHHHHHHHHHhc---CCCEEEeeccc-hhhhHhhhhhHH---------------HHHHHH
Q 005661 222 LGGKLPKGVL--LVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE-FEEMFVGVGARR---------------VRDLFS 280 (685)
Q Consensus 222 ~g~~~pkgvL--L~GPPGTGKT~LAralA~e~---~~~fi~vs~s~-l~~~~~g~~~~~---------------ir~lF~ 280 (685)
+|+-+|+|.+ +|||+|+|||++|-.++..+ +-..++++... |...+....... -..+.+
T Consensus 53 LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~ 132 (279)
T COG0468 53 LGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAE 132 (279)
T ss_pred hcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHH
Confidence 4566777755 79999999999999987766 33445555432 322221111111 111111
Q ss_pred -HHHhC--CCeEEEEcCchhhcCCCCCCc--hHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 281 -AAKKR--SPCIIFIDEIDAIGGSRNPKD--QQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 281 -~A~~~--~P~ILfIDEID~l~~~r~~~~--~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
..+.. ...+|++|-+-++.+.....+ .....+.+++.+..|.+.....++.+|.+-.
T Consensus 133 ~~~~~~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQ 194 (279)
T COG0468 133 KLARSGAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQ 194 (279)
T ss_pred HHHHhccCCCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECc
Confidence 12223 378999999998876543322 2345566677777777766666777776543
Done!